Query 004269
Match_columns 764
No_of_seqs 590 out of 4130
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 20:30:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.7E-88 1.2E-92 773.3 61.8 658 9-745 123-816 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 5.5E-80 1.2E-84 707.4 65.5 645 48-756 47-729 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-71 2.6E-76 623.2 51.2 531 156-745 85-654 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-68 3.8E-73 597.5 63.8 517 118-684 366-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 6.9E-67 1.5E-71 584.7 64.1 516 84-650 367-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2E-63 4.3E-68 556.9 49.1 468 53-576 88-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5E-32 1.1E-36 319.9 71.0 630 9-713 263-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-31 1.1E-35 311.4 73.8 653 3-729 223-880 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-22 2.9E-27 239.0 68.9 619 2-676 57-738 (1157)
10 PRK11447 cellulose synthase su 99.9 7.1E-21 1.5E-25 224.5 69.0 595 10-678 31-700 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 2.3E-18 5E-23 193.5 62.3 601 17-677 54-705 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.7E-17 3.7E-22 186.6 64.6 553 61-677 53-671 (987)
13 KOG4626 O-linked N-acetylgluco 99.8 1.6E-17 3.4E-22 165.0 36.5 377 122-623 116-499 (966)
14 KOG2002 TPR-containing nuclear 99.8 3E-16 6.4E-21 164.6 47.7 559 65-679 177-799 (1018)
15 KOG4626 O-linked N-acetylgluco 99.8 4.3E-18 9.2E-23 169.0 31.3 321 65-427 95-419 (966)
16 PRK11788 tetratricopeptide rep 99.8 2.7E-18 5.9E-23 180.8 31.1 304 99-444 47-362 (389)
17 PRK11788 tetratricopeptide rep 99.8 1.2E-17 2.7E-22 175.8 33.7 296 59-392 42-347 (389)
18 KOG2002 TPR-containing nuclear 99.8 9.5E-14 2.1E-18 146.2 52.1 550 62-677 138-744 (1018)
19 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-14 2.6E-19 161.2 48.7 86 94-183 134-219 (615)
20 PRK10049 pgaA outer membrane p 99.8 3.3E-15 7.1E-20 168.6 44.5 425 84-615 12-461 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-14 2.8E-19 160.9 48.0 423 161-677 130-570 (615)
22 PRK15174 Vi polysaccharide exp 99.8 8.7E-16 1.9E-20 169.4 38.3 326 57-423 47-380 (656)
23 KOG4422 Uncharacterized conser 99.8 6.4E-14 1.4E-18 133.7 43.2 449 159-713 117-587 (625)
24 KOG4422 Uncharacterized conser 99.8 4.4E-14 9.6E-19 134.8 42.1 436 59-645 122-592 (625)
25 PRK15174 Vi polysaccharide exp 99.8 1.4E-14 3.1E-19 159.8 44.9 355 134-573 17-381 (656)
26 PRK10049 pgaA outer membrane p 99.8 9.3E-14 2E-18 156.9 49.4 189 487-678 247-456 (765)
27 PRK14574 hmsH outer membrane p 99.7 3E-13 6.6E-18 149.4 49.5 439 131-678 43-513 (822)
28 PRK14574 hmsH outer membrane p 99.7 5.3E-13 1.1E-17 147.5 48.4 454 60-615 42-518 (822)
29 KOG4318 Bicoid mRNA stability 99.7 4.9E-14 1.1E-18 146.3 35.9 529 107-676 10-623 (1088)
30 KOG2076 RNA polymerase III tra 99.7 4.9E-11 1.1E-15 125.3 51.8 590 53-677 140-768 (895)
31 KOG0495 HAT repeat protein [RN 99.6 7.6E-10 1.6E-14 112.0 54.1 559 64-695 327-896 (913)
32 KOG2003 TPR repeat-containing 99.6 6.3E-12 1.4E-16 120.9 35.7 479 123-675 202-719 (840)
33 KOG2076 RNA polymerase III tra 99.6 3.3E-10 7.2E-15 119.2 49.8 615 9-677 141-848 (895)
34 KOG4318 Bicoid mRNA stability 99.6 2E-11 4.3E-16 127.4 39.9 472 45-574 20-595 (1088)
35 KOG0495 HAT repeat protein [RN 99.6 1.6E-09 3.4E-14 109.7 49.0 513 65-650 359-885 (913)
36 KOG1915 Cell cycle control pro 99.5 1E-08 2.2E-13 100.0 47.9 458 100-642 86-584 (677)
37 PRK10747 putative protoheme IX 99.5 3.9E-11 8.5E-16 124.9 32.4 284 62-390 94-388 (398)
38 KOG1915 Cell cycle control pro 99.5 1.5E-08 3.2E-13 99.0 43.6 437 196-678 76-536 (677)
39 KOG2003 TPR repeat-containing 99.5 6.4E-10 1.4E-14 107.4 34.1 426 206-678 214-689 (840)
40 PF13429 TPR_15: Tetratricopep 99.5 3.4E-13 7.3E-18 134.1 12.1 264 12-321 13-276 (280)
41 TIGR00540 hemY_coli hemY prote 99.4 4E-10 8.6E-15 118.1 33.1 291 62-389 94-396 (409)
42 PF13429 TPR_15: Tetratricopep 99.4 1.1E-12 2.5E-17 130.3 13.3 259 59-355 15-275 (280)
43 PRK10747 putative protoheme IX 99.4 1.7E-09 3.6E-14 112.8 33.9 285 306-673 97-385 (398)
44 COG2956 Predicted N-acetylgluc 99.4 7.8E-10 1.7E-14 102.7 26.5 275 61-373 44-325 (389)
45 KOG1156 N-terminal acetyltrans 99.4 1.6E-07 3.4E-12 95.9 44.1 261 125-423 11-282 (700)
46 KOG1155 Anaphase-promoting com 99.4 3.5E-08 7.7E-13 96.3 37.5 186 486-674 339-532 (559)
47 TIGR00540 hemY_coli hemY prote 99.4 4.7E-10 1E-14 117.6 27.4 294 17-356 94-398 (409)
48 COG3071 HemY Uncharacterized e 99.3 3E-09 6.5E-14 102.2 29.2 286 64-390 96-388 (400)
49 KOG1126 DNA-binding cell divis 99.3 4.9E-10 1.1E-14 114.3 25.1 283 65-390 332-618 (638)
50 KOG1126 DNA-binding cell divis 99.3 4.2E-10 9.1E-15 114.8 24.5 282 102-423 334-619 (638)
51 COG2956 Predicted N-acetylgluc 99.3 9.6E-09 2.1E-13 95.6 29.7 224 305-573 47-278 (389)
52 PF13041 PPR_2: PPR repeat fam 99.3 6.8E-12 1.5E-16 86.6 6.5 50 507-556 1-50 (50)
53 KOG3785 Uncharacterized conser 99.3 1.6E-07 3.5E-12 88.5 35.8 463 59-652 29-497 (557)
54 KOG1155 Anaphase-promoting com 99.3 1.3E-08 2.7E-13 99.4 29.2 307 62-423 237-552 (559)
55 KOG1156 N-terminal acetyltrans 99.3 1.4E-06 3.1E-11 89.1 44.9 476 55-606 10-509 (700)
56 KOG0985 Vesicle coat protein c 99.3 2.1E-06 4.6E-11 91.7 47.2 588 13-672 487-1189(1666)
57 KOG0547 Translocase of outer m 99.2 5E-08 1.1E-12 95.9 32.3 191 480-675 363-563 (606)
58 KOG2047 mRNA splicing factor [ 99.2 1.6E-06 3.4E-11 88.5 43.5 466 38-594 159-709 (835)
59 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5E-16 83.9 6.5 49 577-625 1-49 (50)
60 COG3071 HemY Uncharacterized e 99.2 7.9E-08 1.7E-12 92.6 32.3 288 305-642 96-389 (400)
61 KOG0547 Translocase of outer m 99.2 2.4E-08 5.2E-13 98.1 28.8 323 59-423 122-490 (606)
62 KOG3785 Uncharacterized conser 99.2 1.4E-06 3E-11 82.3 38.5 201 484-691 292-501 (557)
63 KOG2047 mRNA splicing factor [ 99.2 7.8E-06 1.7E-10 83.6 53.8 296 365-673 389-718 (835)
64 TIGR02521 type_IV_pilW type IV 99.2 6.9E-09 1.5E-13 100.6 23.1 201 52-255 31-231 (234)
65 KOG1173 Anaphase-promoting com 99.2 1.7E-06 3.8E-11 87.1 38.6 333 52-423 16-374 (611)
66 KOG1129 TPR repeat-containing 99.1 4.1E-09 8.9E-14 97.9 18.4 232 123-392 224-458 (478)
67 TIGR02521 type_IV_pilW type IV 99.1 3.6E-08 7.8E-13 95.6 24.4 96 122-220 31-126 (234)
68 KOG2376 Signal recognition par 99.1 1.1E-05 2.4E-10 81.9 41.5 472 129-675 19-517 (652)
69 KOG4162 Predicted calmodulin-b 99.1 3.2E-05 6.9E-10 81.2 46.5 314 65-423 240-575 (799)
70 PRK12370 invasion protein regu 99.1 5E-08 1.1E-12 106.5 27.1 244 137-423 276-534 (553)
71 KOG1173 Anaphase-promoting com 99.1 8.9E-06 1.9E-10 82.2 39.0 467 85-657 14-530 (611)
72 PRK12370 invasion protein regu 99.1 4.6E-08 1E-12 106.7 25.4 244 157-438 255-518 (553)
73 PF12569 NARP1: NMDA receptor- 99.0 1.6E-05 3.4E-10 84.0 41.2 305 94-423 11-333 (517)
74 KOG1129 TPR repeat-containing 99.0 3E-08 6.4E-13 92.3 17.7 226 58-321 229-457 (478)
75 KOG3616 Selective LIM binding 99.0 6.8E-05 1.5E-09 77.8 45.6 135 96-252 741-875 (1636)
76 KOG0985 Vesicle coat protein c 99.0 2.5E-05 5.3E-10 83.9 40.9 138 510-671 1105-1242(1666)
77 PF12569 NARP1: NMDA receptor- 99.0 9.9E-07 2.1E-11 92.8 30.1 293 58-392 10-334 (517)
78 KOG2376 Signal recognition par 99.0 2.5E-05 5.4E-10 79.5 38.2 476 55-640 15-517 (652)
79 KOG3617 WD40 and TPR repeat-co 98.9 7.6E-05 1.6E-09 78.6 41.0 517 53-679 758-1360(1416)
80 KOG1840 Kinesin light chain [C 98.9 6.8E-07 1.5E-11 92.8 26.6 245 365-676 201-477 (508)
81 KOG3616 Selective LIM binding 98.9 5.1E-05 1.1E-09 78.7 38.3 192 302-533 715-906 (1636)
82 KOG1127 TPR repeat-containing 98.9 3.3E-05 7.1E-10 83.2 37.3 185 68-255 474-658 (1238)
83 KOG1840 Kinesin light chain [C 98.9 2.4E-07 5.1E-12 96.2 20.9 249 4-255 196-478 (508)
84 KOG4162 Predicted calmodulin-b 98.9 0.00026 5.6E-09 74.7 46.6 503 99-677 239-782 (799)
85 PRK11189 lipoprotein NlpI; Pro 98.9 9.3E-07 2E-11 88.1 23.7 225 65-323 39-266 (296)
86 PRK11189 lipoprotein NlpI; Pro 98.8 1.3E-06 2.9E-11 87.0 24.7 201 196-435 67-276 (296)
87 COG3063 PilF Tfp pilus assembl 98.8 1.2E-06 2.6E-11 78.3 21.2 203 50-255 33-235 (250)
88 KOG4340 Uncharacterized conser 98.8 5.8E-06 1.3E-10 76.4 25.3 317 57-391 15-338 (459)
89 KOG3617 WD40 and TPR repeat-co 98.8 0.00035 7.5E-09 73.9 40.6 303 11-391 761-1108(1416)
90 KOG1174 Anaphase-promoting com 98.8 4.5E-05 9.8E-10 74.0 30.5 272 118-428 228-503 (564)
91 COG3063 PilF Tfp pilus assembl 98.8 5.6E-06 1.2E-10 74.1 22.4 189 164-385 41-229 (250)
92 KOG1127 TPR repeat-containing 98.7 0.00064 1.4E-08 73.7 41.2 381 8-420 493-909 (1238)
93 cd05804 StaR_like StaR_like; a 98.7 3.7E-05 8.1E-10 79.8 32.4 260 132-423 53-335 (355)
94 cd05804 StaR_like StaR_like; a 98.7 2.4E-05 5.2E-10 81.2 28.6 310 4-357 3-336 (355)
95 PF12854 PPR_1: PPR repeat 98.6 5.1E-08 1.1E-12 60.0 4.1 32 574-605 2-33 (34)
96 PF04733 Coatomer_E: Coatomer 98.6 2.6E-06 5.6E-11 83.5 17.3 253 13-322 7-265 (290)
97 PF04733 Coatomer_E: Coatomer 98.6 3.2E-06 6.9E-11 82.9 17.7 84 306-391 180-264 (290)
98 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3.1E-12 58.0 4.3 32 609-640 2-33 (34)
99 KOG4340 Uncharacterized conser 98.5 0.00057 1.2E-08 63.6 29.2 348 196-606 13-373 (459)
100 KOG0624 dsRNA-activated protei 98.5 0.00012 2.6E-09 69.4 25.0 305 57-423 43-369 (504)
101 KOG1125 TPR repeat-containing 98.5 1.3E-05 2.9E-10 81.3 19.9 222 59-320 292-525 (579)
102 KOG1125 TPR repeat-containing 98.5 2.4E-05 5.3E-10 79.5 21.3 222 96-356 294-526 (579)
103 PRK04841 transcriptional regul 98.5 0.0003 6.5E-09 83.2 33.7 338 59-423 381-759 (903)
104 KOG1174 Anaphase-promoting com 98.5 0.0019 4.1E-08 63.2 36.5 289 306-650 209-505 (564)
105 KOG0548 Molecular co-chaperone 98.4 0.0014 2.9E-08 66.6 31.9 160 484-657 305-467 (539)
106 KOG0548 Molecular co-chaperone 98.4 0.0022 4.7E-08 65.2 32.6 106 516-626 365-471 (539)
107 KOG1914 mRNA cleavage and poly 98.4 0.0032 7E-08 63.9 39.1 162 510-673 367-534 (656)
108 PRK04841 transcriptional regul 98.4 0.0014 3E-08 77.6 36.8 344 54-423 343-719 (903)
109 KOG1070 rRNA processing protei 98.4 0.00015 3.3E-09 81.0 25.1 203 87-325 1458-1666(1710)
110 KOG1070 rRNA processing protei 98.3 0.00031 6.8E-09 78.7 26.6 225 103-362 1441-1668(1710)
111 PLN02789 farnesyltranstransfer 98.3 0.0005 1.1E-08 68.5 26.1 168 173-375 87-267 (320)
112 TIGR03302 OM_YfiO outer membra 98.3 6.7E-05 1.4E-09 72.5 19.5 189 85-322 31-232 (235)
113 PLN02789 farnesyltranstransfer 98.3 0.00066 1.4E-08 67.6 25.5 205 99-340 49-267 (320)
114 KOG2053 Mitochondrial inherita 98.3 0.012 2.6E-07 63.7 46.4 528 59-641 16-606 (932)
115 KOG1128 Uncharacterized conser 98.2 0.00015 3.2E-09 76.0 20.5 233 155-437 395-631 (777)
116 KOG1914 mRNA cleavage and poly 98.2 0.0084 1.8E-07 61.0 43.1 150 525-677 347-500 (656)
117 KOG1128 Uncharacterized conser 98.2 9.6E-05 2.1E-09 77.3 18.9 214 91-356 402-615 (777)
118 PRK14720 transcript cleavage f 98.2 0.00039 8.5E-09 77.3 24.3 146 87-255 31-177 (906)
119 TIGR03302 OM_YfiO outer membra 98.1 0.00037 8.1E-09 67.3 20.2 60 619-678 171-232 (235)
120 KOG2053 Mitochondrial inherita 98.1 0.025 5.4E-07 61.4 47.2 222 134-393 21-256 (932)
121 TIGR00756 PPR pentatricopeptid 98.1 6.2E-06 1.4E-10 51.8 4.5 33 511-543 2-34 (35)
122 KOG3060 Uncharacterized conser 98.1 0.0011 2.5E-08 60.5 19.9 157 101-262 26-187 (289)
123 COG5010 TadD Flp pilus assembl 98.0 0.00034 7.4E-09 64.4 16.4 57 199-255 106-162 (257)
124 PRK10370 formate-dependent nit 98.0 0.001 2.2E-08 61.6 19.7 119 171-322 52-173 (198)
125 COG5010 TadD Flp pilus assembl 98.0 0.0013 2.8E-08 60.7 19.7 156 481-639 70-227 (257)
126 PRK10370 formate-dependent nit 98.0 0.00054 1.2E-08 63.4 17.8 157 59-231 23-182 (198)
127 TIGR00756 PPR pentatricopeptid 98.0 9.5E-06 2.1E-10 50.9 4.4 34 295-328 2-35 (35)
128 PRK15179 Vi polysaccharide bio 98.0 0.0013 2.7E-08 72.7 23.3 219 121-393 27-246 (694)
129 PRK15179 Vi polysaccharide bio 98.0 0.0027 5.8E-08 70.2 25.7 209 95-358 36-246 (694)
130 KOG0624 dsRNA-activated protei 98.0 0.018 3.9E-07 55.2 36.1 201 196-432 41-259 (504)
131 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 2.9E-10 49.8 4.3 33 510-542 2-34 (34)
132 COG4783 Putative Zn-dependent 98.0 0.0057 1.2E-07 61.7 24.5 146 236-431 315-461 (484)
133 PRK14720 transcript cleavage f 98.0 0.0021 4.6E-08 71.6 23.7 234 52-339 31-268 (906)
134 KOG3081 Vesicle coat complex C 97.9 0.0096 2.1E-07 55.1 23.3 185 58-256 47-236 (299)
135 COG4783 Putative Zn-dependent 97.9 0.014 3E-07 59.0 25.9 202 138-393 253-455 (484)
136 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.5E-10 48.9 4.2 33 294-326 2-34 (34)
137 PRK15359 type III secretion sy 97.9 0.00043 9.3E-09 60.4 13.9 103 127-232 29-131 (144)
138 PRK15359 type III secretion sy 97.9 0.00054 1.2E-08 59.8 14.3 101 549-653 29-129 (144)
139 KOG3081 Vesicle coat complex C 97.9 0.0028 6.1E-08 58.5 18.6 170 464-641 95-269 (299)
140 TIGR02552 LcrH_SycD type III s 97.7 0.00071 1.5E-08 58.7 12.9 97 88-187 18-114 (135)
141 TIGR02552 LcrH_SycD type III s 97.7 0.0019 4.1E-08 56.0 15.5 91 550-642 23-113 (135)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00088 1.9E-08 68.1 14.9 124 162-321 173-296 (395)
143 PF08579 RPM2: Mitochondrial r 97.7 0.00075 1.6E-08 53.4 10.8 72 554-625 35-115 (120)
144 PF01535 PPR: PPR repeat; Int 97.7 5E-05 1.1E-09 45.9 3.5 31 510-540 1-31 (31)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.001 2.2E-08 67.7 14.7 127 123-255 170-296 (395)
146 PF08579 RPM2: Mitochondrial r 97.7 0.00068 1.5E-08 53.6 10.0 82 511-592 27-117 (120)
147 PF10037 MRP-S27: Mitochondria 97.7 0.00093 2E-08 68.2 13.8 126 222-376 61-186 (429)
148 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.4E-08 67.6 14.0 113 541-653 63-177 (429)
149 PF04840 Vps16_C: Vps16, C-ter 97.6 0.077 1.7E-06 52.9 26.6 109 511-639 179-287 (319)
150 PF09976 TPR_21: Tetratricopep 97.6 0.0023 5.1E-08 56.0 14.4 127 124-252 14-143 (145)
151 KOG3060 Uncharacterized conser 97.6 0.018 3.9E-07 52.9 19.7 187 65-255 25-219 (289)
152 PF01535 PPR: PPR repeat; Int 97.6 8.5E-05 1.8E-09 44.9 3.6 30 295-324 2-31 (31)
153 PF05843 Suf: Suppressor of fo 97.5 0.0013 2.8E-08 64.8 12.8 131 123-255 2-135 (280)
154 PF09976 TPR_21: Tetratricopep 97.5 0.0046 9.9E-08 54.2 15.0 115 557-673 24-142 (145)
155 PF14938 SNAP: Soluble NSF att 97.5 0.0065 1.4E-07 60.2 17.0 119 200-358 101-226 (282)
156 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0041 8.8E-08 52.4 13.1 105 125-229 5-112 (119)
157 KOG2041 WD40 repeat protein [G 97.4 0.12 2.6E-06 54.5 25.2 108 294-421 797-904 (1189)
158 PF05843 Suf: Suppressor of fo 97.3 0.0033 7.2E-08 61.9 12.9 132 53-187 2-136 (280)
159 KOG2280 Vacuolar assembly/sort 97.2 0.41 8.9E-06 51.4 29.5 158 61-220 398-573 (829)
160 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.3 6.4E-06 49.1 34.8 130 545-677 398-530 (660)
161 PF12895 Apc3: Anaphase-promot 97.2 0.00074 1.6E-08 52.6 5.3 80 592-674 2-83 (84)
162 PF04840 Vps16_C: Vps16, C-ter 97.1 0.33 7.2E-06 48.5 24.7 105 547-671 180-284 (319)
163 cd00189 TPR Tetratricopeptide 97.1 0.0062 1.3E-07 48.5 10.7 88 127-217 5-92 (100)
164 PF06239 ECSIT: Evolutionarily 97.1 0.013 2.8E-07 52.9 12.6 105 541-664 44-153 (228)
165 cd00189 TPR Tetratricopeptide 97.0 0.0074 1.6E-07 48.0 10.4 92 161-253 3-94 (100)
166 PF06239 ECSIT: Evolutionarily 97.0 0.011 2.4E-07 53.3 11.7 106 505-629 43-153 (228)
167 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.016 3.5E-07 48.7 12.0 97 160-256 4-105 (119)
168 PRK15363 pathogenicity island 97.0 0.043 9.4E-07 47.3 14.1 88 167-255 44-131 (157)
169 PRK02603 photosystem I assembl 96.9 0.033 7.1E-07 50.5 14.3 91 122-213 35-126 (172)
170 COG4700 Uncharacterized protei 96.9 0.14 2.9E-06 44.9 16.6 101 120-221 87-188 (251)
171 PRK02603 photosystem I assembl 96.9 0.04 8.7E-07 49.9 14.8 89 510-599 36-126 (172)
172 KOG1538 Uncharacterized conser 96.9 0.18 3.9E-06 52.8 20.4 230 119-429 553-806 (1081)
173 PRK10866 outer membrane biogen 96.9 0.2 4.4E-06 48.0 19.9 176 58-254 38-239 (243)
174 PF13525 YfiO: Outer membrane 96.9 0.078 1.7E-06 49.5 16.7 177 51-247 4-198 (203)
175 KOG2796 Uncharacterized conser 96.8 0.055 1.2E-06 50.0 14.4 122 64-187 189-315 (366)
176 PF12895 Apc3: Anaphase-promot 96.8 0.0031 6.8E-08 49.0 6.0 80 135-217 2-82 (84)
177 CHL00033 ycf3 photosystem I as 96.8 0.028 6E-07 50.8 13.0 65 122-186 35-100 (168)
178 PLN03088 SGT1, suppressor of 96.8 0.031 6.7E-07 57.3 14.6 89 517-607 10-98 (356)
179 PRK15363 pathogenicity island 96.8 0.052 1.1E-06 46.8 13.4 94 197-322 39-132 (157)
180 KOG0553 TPR repeat-containing 96.8 0.048 1E-06 51.8 14.1 102 203-338 91-192 (304)
181 CHL00033 ycf3 photosystem I as 96.8 0.035 7.6E-07 50.1 13.1 61 547-607 38-100 (168)
182 PLN03088 SGT1, suppressor of 96.8 0.02 4.4E-07 58.6 12.8 51 205-255 14-64 (356)
183 PF07079 DUF1347: Protein of u 96.7 0.79 1.7E-05 46.4 40.3 75 347-423 244-326 (549)
184 KOG2796 Uncharacterized conser 96.7 0.17 3.8E-06 46.9 16.5 143 294-437 178-327 (366)
185 PF13432 TPR_16: Tetratricopep 96.7 0.0082 1.8E-07 43.9 7.0 59 201-261 5-63 (65)
186 PRK10153 DNA-binding transcrip 96.7 0.14 3E-06 55.1 18.7 142 505-652 333-489 (517)
187 PRK10866 outer membrane biogen 96.6 0.74 1.6E-05 44.2 21.9 57 298-354 180-238 (243)
188 KOG2280 Vacuolar assembly/sort 96.6 1.5 3.3E-05 47.3 32.2 329 295-672 439-793 (829)
189 COG3898 Uncharacterized membra 96.5 0.97 2.1E-05 44.7 25.5 286 62-393 94-393 (531)
190 PF14559 TPR_19: Tetratricopep 96.5 0.009 1.9E-07 44.2 6.3 63 590-655 2-64 (68)
191 PF12688 TPR_5: Tetratrico pep 96.5 0.14 3.1E-06 42.5 13.6 88 517-606 9-102 (120)
192 PF12688 TPR_5: Tetratrico pep 96.4 0.073 1.6E-06 44.2 11.5 86 586-673 8-99 (120)
193 KOG0553 TPR repeat-containing 96.4 0.046 1E-06 51.9 11.2 99 554-657 91-190 (304)
194 PF14938 SNAP: Soluble NSF att 96.4 0.16 3.4E-06 50.3 15.9 60 90-149 117-182 (282)
195 PF13414 TPR_11: TPR repeat; P 96.3 0.02 4.3E-07 42.4 7.2 64 192-255 2-66 (69)
196 PF14559 TPR_19: Tetratricopep 96.3 0.013 2.9E-07 43.2 6.1 51 205-255 3-53 (68)
197 PF12921 ATP13: Mitochondrial 96.3 0.062 1.3E-06 45.1 10.5 83 122-204 2-99 (126)
198 PF13432 TPR_16: Tetratricopep 96.3 0.023 4.9E-07 41.5 7.2 56 586-642 4-59 (65)
199 PRK10153 DNA-binding transcrip 96.3 0.38 8.3E-06 51.8 19.1 137 83-222 333-482 (517)
200 COG4700 Uncharacterized protei 96.3 0.74 1.6E-05 40.5 18.9 134 540-677 85-221 (251)
201 PF13525 YfiO: Outer membrane 96.1 0.8 1.7E-05 42.7 18.2 177 95-313 13-198 (203)
202 KOG1538 Uncharacterized conser 96.0 0.63 1.4E-05 49.0 17.9 271 326-643 554-846 (1081)
203 KOG2114 Vacuolar assembly/sort 96.0 2.4 5.2E-05 46.5 22.5 78 134-219 380-457 (933)
204 PF03704 BTAD: Bacterial trans 95.9 0.23 5E-06 43.5 13.2 71 124-196 64-139 (146)
205 PF13414 TPR_11: TPR repeat; P 95.9 0.038 8.2E-07 40.9 6.9 60 581-641 5-65 (69)
206 PF09205 DUF1955: Domain of un 95.9 0.81 1.8E-05 37.8 14.5 138 100-259 15-152 (161)
207 PRK10803 tol-pal system protei 95.8 0.13 2.8E-06 49.8 11.9 99 195-322 145-246 (263)
208 PF12921 ATP13: Mitochondrial 95.8 0.085 1.8E-06 44.3 9.2 53 117-169 47-99 (126)
209 PF08631 SPO22: Meiosis protei 95.8 2.3 4.9E-05 42.0 24.8 61 195-255 86-149 (278)
210 KOG2114 Vacuolar assembly/sort 95.8 1.5 3.3E-05 48.0 20.0 75 368-443 710-785 (933)
211 KOG1130 Predicted G-alpha GTPa 95.7 0.07 1.5E-06 52.6 9.5 268 59-354 24-341 (639)
212 COG4235 Cytochrome c biogenesi 95.7 0.63 1.4E-05 44.7 15.6 33 223-255 152-184 (287)
213 COG3898 Uncharacterized membra 95.7 2.6 5.6E-05 41.9 26.1 285 103-436 69-369 (531)
214 KOG2041 WD40 repeat protein [G 95.7 3.8 8.3E-05 43.9 27.1 332 325-674 689-1082(1189)
215 PF13281 DUF4071: Domain of un 95.5 1.1 2.3E-05 45.4 17.3 76 57-132 146-227 (374)
216 KOG3941 Intermediate in Toll s 95.5 0.11 2.3E-06 48.7 9.4 90 506-595 64-174 (406)
217 COG5107 RNA14 Pre-mRNA 3'-end 95.5 3.3 7.2E-05 42.0 36.7 147 508-660 396-546 (660)
218 PF13281 DUF4071: Domain of un 95.5 3.1 6.7E-05 42.2 20.3 97 125-221 144-254 (374)
219 KOG0550 Molecular chaperone (D 95.5 3.2 6.8E-05 41.7 21.5 85 339-423 260-349 (486)
220 PRK10803 tol-pal system protei 95.5 0.21 4.6E-06 48.3 12.0 96 160-255 145-245 (263)
221 PF03704 BTAD: Bacterial trans 95.4 0.094 2E-06 46.0 8.8 68 583-651 66-138 (146)
222 PF07079 DUF1347: Protein of u 95.3 3.9 8.4E-05 41.7 41.3 140 61-205 15-179 (549)
223 PF13371 TPR_9: Tetratricopept 95.3 0.054 1.2E-06 40.6 5.8 52 97-149 5-56 (73)
224 COG4105 ComL DNA uptake lipopr 95.1 3 6.4E-05 39.4 19.9 56 299-355 173-231 (254)
225 KOG0550 Molecular chaperone (D 95.1 4.2 9.1E-05 40.9 20.8 263 10-322 52-350 (486)
226 PF13371 TPR_9: Tetratricopept 95.1 0.081 1.8E-06 39.6 6.3 55 201-255 3-57 (73)
227 KOG1130 Predicted G-alpha GTPa 95.0 0.41 8.8E-06 47.5 12.1 230 95-353 25-300 (639)
228 COG4235 Cytochrome c biogenesi 95.0 1.3 2.7E-05 42.7 15.1 100 155-255 153-255 (287)
229 KOG1585 Protein required for f 95.0 1.3 2.8E-05 41.0 14.3 209 89-351 33-250 (308)
230 PF10300 DUF3808: Protein of u 94.8 1.2 2.6E-05 47.5 16.4 93 161-254 191-294 (468)
231 COG4105 ComL DNA uptake lipopr 94.7 3.7 8E-05 38.7 17.0 179 54-254 36-231 (254)
232 PF13170 DUF4003: Protein of u 94.7 4.1 8.9E-05 40.3 18.4 148 525-675 78-243 (297)
233 PF13424 TPR_12: Tetratricopep 94.6 0.13 2.9E-06 39.1 6.4 61 581-641 7-73 (78)
234 PF10300 DUF3808: Protein of u 94.4 2.2 4.7E-05 45.7 17.1 164 89-255 190-375 (468)
235 KOG3941 Intermediate in Toll s 94.2 0.38 8.2E-06 45.2 9.3 89 541-629 64-173 (406)
236 KOG2610 Uncharacterized conser 94.2 3.9 8.5E-05 39.8 16.2 150 522-674 116-272 (491)
237 PF13424 TPR_12: Tetratricopep 94.2 0.23 5.1E-06 37.7 7.0 68 228-321 6-74 (78)
238 PLN03098 LPA1 LOW PSII ACCUMUL 94.2 0.9 1.9E-05 46.6 12.7 62 122-186 75-140 (453)
239 PF13512 TPR_18: Tetratricopep 94.1 0.49 1.1E-05 40.2 9.2 88 47-134 5-94 (142)
240 PF13512 TPR_18: Tetratricopep 94.0 1.7 3.7E-05 37.0 12.1 54 134-187 22-76 (142)
241 smart00299 CLH Clathrin heavy 94.0 3.7 8E-05 35.5 15.1 82 59-148 14-95 (140)
242 PF09205 DUF1955: Domain of un 93.9 3.1 6.8E-05 34.5 14.0 64 617-681 89-152 (161)
243 PLN03098 LPA1 LOW PSII ACCUMUL 93.7 1.9 4.2E-05 44.3 14.1 11 641-651 404-414 (453)
244 PF07035 Mic1: Colon cancer-as 93.6 4.9 0.00011 35.5 16.1 140 564-720 14-153 (167)
245 PF13170 DUF4003: Protein of u 93.5 8.5 0.00018 38.1 21.2 131 174-336 78-225 (297)
246 COG1747 Uncharacterized N-term 93.4 9.2 0.0002 39.7 17.9 173 57-238 71-250 (711)
247 PF04053 Coatomer_WDAD: Coatom 93.2 4.5 9.7E-05 42.7 16.4 105 124-255 297-401 (443)
248 smart00299 CLH Clathrin heavy 93.1 5.4 0.00012 34.5 15.6 85 513-605 11-95 (140)
249 COG3118 Thioredoxin domain-con 93.0 3.5 7.5E-05 39.7 13.7 51 63-114 145-195 (304)
250 KOG1920 IkappaB kinase complex 93.0 22 0.00048 41.2 22.7 130 11-149 681-819 (1265)
251 PF04053 Coatomer_WDAD: Coatom 92.9 1.8 4E-05 45.5 13.1 152 489-673 273-426 (443)
252 PRK15331 chaperone protein Sic 92.7 3.1 6.8E-05 36.4 11.9 87 132-221 47-133 (165)
253 KOG0543 FKBP-type peptidyl-pro 92.6 5.9 0.00013 39.9 15.2 80 294-375 258-337 (397)
254 COG1729 Uncharacterized protei 92.3 3.9 8.4E-05 39.0 13.0 106 123-231 143-253 (262)
255 PF07035 Mic1: Colon cancer-as 92.2 8 0.00017 34.2 15.1 60 295-358 91-150 (167)
256 COG1729 Uncharacterized protei 92.1 1.7 3.7E-05 41.3 10.3 91 61-151 150-244 (262)
257 PRK15331 chaperone protein Sic 91.9 1 2.3E-05 39.2 8.1 90 59-150 44-133 (165)
258 KOG1941 Acetylcholine receptor 91.7 8.6 0.00019 38.0 14.6 134 229-389 124-272 (518)
259 KOG4555 TPR repeat-containing 91.6 4.5 9.7E-05 33.5 10.7 86 588-674 52-140 (175)
260 KOG0543 FKBP-type peptidyl-pro 91.5 3.8 8.2E-05 41.3 12.5 66 195-262 259-324 (397)
261 COG3118 Thioredoxin domain-con 91.1 15 0.00033 35.5 17.7 127 128-257 140-266 (304)
262 KOG1585 Protein required for f 90.9 14 0.0003 34.6 15.0 87 123-220 32-118 (308)
263 KOG1920 IkappaB kinase complex 90.2 43 0.00093 39.1 30.5 152 491-674 894-1051(1265)
264 PF13428 TPR_14: Tetratricopep 90.2 0.88 1.9E-05 29.8 4.9 36 197-232 5-40 (44)
265 PF08631 SPO22: Meiosis protei 89.9 21 0.00046 35.2 23.8 163 62-227 3-192 (278)
266 PF13428 TPR_14: Tetratricopep 89.8 1.3 2.8E-05 29.0 5.5 26 582-607 4-29 (44)
267 COG3629 DnrI DNA-binding trans 89.8 4.1 9E-05 39.4 10.9 77 580-657 154-235 (280)
268 COG0457 NrfG FOG: TPR repeat [ 89.6 18 0.0004 33.9 24.4 197 477-677 59-264 (291)
269 KOG2610 Uncharacterized conser 89.2 9.8 0.00021 37.2 12.6 119 132-253 113-235 (491)
270 PRK11906 transcriptional regul 89.2 18 0.00039 37.6 15.4 131 159-321 252-400 (458)
271 KOG1941 Acetylcholine receptor 88.8 17 0.00036 36.1 13.9 129 295-423 85-234 (518)
272 PRK11906 transcriptional regul 88.6 19 0.00041 37.5 15.0 123 137-262 273-405 (458)
273 PF10602 RPN7: 26S proteasome 88.5 6.8 0.00015 35.4 10.9 94 580-673 37-137 (177)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 88.3 3.6 7.7E-05 32.0 7.4 45 598-642 26-70 (103)
275 COG4649 Uncharacterized protei 88.0 18 0.00039 31.8 13.4 135 85-221 57-195 (221)
276 PF02284 COX5A: Cytochrome c o 87.3 9.9 0.00022 30.0 9.3 58 598-656 29-86 (108)
277 COG3629 DnrI DNA-binding trans 87.1 5.3 0.00011 38.7 9.7 76 124-201 155-235 (280)
278 PF04184 ST7: ST7 protein; In 87.1 34 0.00074 35.9 15.6 61 363-423 259-323 (539)
279 KOG1550 Extracellular protein 86.6 26 0.00056 38.6 16.1 117 138-257 228-358 (552)
280 KOG4570 Uncharacterized conser 86.3 7.3 0.00016 37.7 9.9 103 117-221 59-163 (418)
281 PF13431 TPR_17: Tetratricopep 86.0 0.78 1.7E-05 28.0 2.4 32 216-247 2-33 (34)
282 KOG4555 TPR repeat-containing 85.9 12 0.00026 31.1 9.5 53 203-255 53-105 (175)
283 PF13176 TPR_7: Tetratricopept 85.9 2 4.3E-05 26.6 4.2 22 618-639 3-24 (36)
284 COG4649 Uncharacterized protei 85.7 25 0.00053 31.1 14.6 140 510-650 60-203 (221)
285 PF10602 RPN7: 26S proteasome 85.5 7.3 0.00016 35.2 9.4 64 229-321 38-101 (177)
286 PF04097 Nic96: Nup93/Nic96; 85.4 68 0.0015 35.9 19.2 86 517-607 266-355 (613)
287 KOG4570 Uncharacterized conser 85.1 5.4 0.00012 38.5 8.4 108 222-359 59-166 (418)
288 PF13176 TPR_7: Tetratricopept 85.0 1.7 3.8E-05 26.9 3.7 27 229-255 1-27 (36)
289 PF09613 HrpB1_HrpK: Bacterial 84.7 27 0.00058 30.6 12.6 17 132-148 54-70 (160)
290 COG4785 NlpI Lipoprotein NlpI, 84.6 33 0.00071 31.6 15.3 160 87-256 99-266 (297)
291 PF13929 mRNA_stabil: mRNA sta 84.5 29 0.00062 33.7 13.0 125 90-217 134-262 (292)
292 COG0457 NrfG FOG: TPR repeat [ 83.9 38 0.00082 31.7 27.2 96 159-254 60-157 (291)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 83.7 8.9 0.00019 29.9 7.5 48 174-221 23-70 (103)
294 PF13431 TPR_17: Tetratricopep 83.5 1.4 3E-05 26.9 2.7 24 119-142 10-33 (34)
295 PF02284 COX5A: Cytochrome c o 83.3 8.2 0.00018 30.5 7.2 45 177-221 29-73 (108)
296 KOG1586 Protein required for f 80.5 51 0.0011 30.8 16.5 25 300-324 161-185 (288)
297 KOG1550 Extracellular protein 79.9 1E+02 0.0022 34.0 17.9 120 520-644 260-394 (552)
298 KOG0276 Vesicle coat complex C 79.5 42 0.00091 36.0 12.9 99 134-253 649-747 (794)
299 KOG2066 Vacuolar assembly/sort 79.0 1.1E+02 0.0025 34.0 26.1 55 201-255 364-420 (846)
300 COG4455 ImpE Protein of avirul 78.9 14 0.00031 33.9 8.3 56 200-255 8-63 (273)
301 PF00515 TPR_1: Tetratricopept 78.7 5.3 0.00012 24.0 4.2 28 228-255 2-29 (34)
302 PF00515 TPR_1: Tetratricopept 77.7 6.6 0.00014 23.6 4.4 25 617-641 4-28 (34)
303 PRK15180 Vi polysaccharide bio 76.9 58 0.0012 33.8 12.7 124 204-360 300-423 (831)
304 PF09613 HrpB1_HrpK: Bacterial 76.9 51 0.0011 28.9 13.6 75 298-376 15-90 (160)
305 KOG0686 COP9 signalosome, subu 76.8 74 0.0016 32.5 13.2 168 7-187 150-333 (466)
306 PF11207 DUF2989: Protein of u 76.6 26 0.00057 32.0 9.4 80 588-669 116-198 (203)
307 PF07719 TPR_2: Tetratricopept 75.6 7.2 0.00016 23.3 4.2 27 229-255 3-29 (34)
308 KOG0890 Protein kinase of the 75.5 2.5E+02 0.0054 36.1 31.8 156 202-401 1392-1552(2382)
309 PF13374 TPR_10: Tetratricopep 75.4 7.5 0.00016 24.6 4.5 25 581-605 4-28 (42)
310 PF07719 TPR_2: Tetratricopept 75.0 8.4 0.00018 23.0 4.4 23 619-641 6-28 (34)
311 TIGR02561 HrpB1_HrpK type III 75.0 55 0.0012 28.3 10.6 103 301-423 18-121 (153)
312 PF04184 ST7: ST7 protein; In 74.5 1.2E+02 0.0026 32.1 20.7 74 582-656 262-338 (539)
313 KOG0276 Vesicle coat complex C 73.8 16 0.00035 38.8 8.3 134 8-185 615-748 (794)
314 PF13374 TPR_10: Tetratricopep 73.6 9.3 0.0002 24.1 4.6 28 615-642 3-30 (42)
315 COG3947 Response regulator con 73.3 94 0.002 30.2 15.1 148 105-255 151-341 (361)
316 PHA02875 ankyrin repeat protei 73.0 61 0.0013 34.2 13.2 7 304-310 143-149 (413)
317 PF00637 Clathrin: Region in C 73.0 1.1 2.3E-05 39.0 -0.1 50 554-603 17-66 (143)
318 PF04097 Nic96: Nup93/Nic96; 71.9 1.7E+02 0.0038 32.7 25.8 42 164-206 117-158 (613)
319 PF11207 DUF2989: Protein of u 71.5 42 0.00092 30.7 9.4 71 562-633 124-197 (203)
320 PF13929 mRNA_stabil: mRNA sta 71.5 1E+02 0.0023 30.0 16.8 116 523-638 142-262 (292)
321 PF00637 Clathrin: Region in C 71.4 2.9 6.2E-05 36.3 2.2 85 92-184 12-96 (143)
322 PF10345 Cohesin_load: Cohesin 71.1 1.8E+02 0.0039 32.6 40.2 165 90-255 62-253 (608)
323 PF13934 ELYS: Nuclear pore co 71.0 61 0.0013 30.7 11.1 22 4-25 23-44 (226)
324 PF02259 FAT: FAT domain; Int 70.3 1.3E+02 0.0029 30.7 23.6 62 295-356 148-212 (352)
325 PRK09687 putative lyase; Provi 69.9 1.2E+02 0.0026 30.0 26.9 115 514-642 147-262 (280)
326 PF06552 TOM20_plant: Plant sp 69.7 69 0.0015 28.7 10.0 44 309-360 96-139 (186)
327 COG4455 ImpE Protein of avirul 69.2 31 0.00067 31.8 8.0 53 129-183 8-60 (273)
328 KOG1258 mRNA processing protei 68.6 1.8E+02 0.0039 31.5 32.5 127 294-423 46-179 (577)
329 PF07163 Pex26: Pex26 protein; 68.3 67 0.0015 31.0 10.3 87 551-637 90-181 (309)
330 KOG2297 Predicted translation 68.2 1.2E+02 0.0027 29.6 13.9 17 398-414 324-340 (412)
331 PF07721 TPR_4: Tetratricopept 66.5 8.3 0.00018 21.7 2.7 20 127-146 6-25 (26)
332 KOG4077 Cytochrome c oxidase, 65.2 44 0.00096 27.7 7.3 42 601-642 71-112 (149)
333 PF13181 TPR_8: Tetratricopept 65.0 14 0.0003 22.1 3.7 27 229-255 3-29 (34)
334 PF13762 MNE1: Mitochondrial s 64.6 94 0.002 26.9 10.7 93 114-206 29-128 (145)
335 COG5159 RPN6 26S proteasome re 63.9 1.5E+02 0.0031 28.8 18.3 164 165-354 10-191 (421)
336 KOG4077 Cytochrome c oxidase, 62.5 45 0.00098 27.6 6.9 48 176-223 67-114 (149)
337 COG4785 NlpI Lipoprotein NlpI, 62.3 1.3E+02 0.0029 27.8 14.6 165 121-322 98-266 (297)
338 TIGR03504 FimV_Cterm FimV C-te 62.3 15 0.00032 24.1 3.5 20 95-114 7-26 (44)
339 KOG4648 Uncharacterized conser 61.4 27 0.00059 34.4 6.6 45 131-178 106-151 (536)
340 PF13181 TPR_8: Tetratricopept 60.0 27 0.00058 20.7 4.4 25 582-606 4-28 (34)
341 cd08819 CARD_MDA5_2 Caspase ac 59.7 73 0.0016 24.6 7.2 65 347-414 21-85 (88)
342 PF13174 TPR_6: Tetratricopept 58.8 20 0.00044 21.0 3.7 16 239-254 12-27 (33)
343 KOG4234 TPR repeat-containing 58.2 39 0.00085 30.7 6.5 91 59-151 102-197 (271)
344 PHA02875 ankyrin repeat protei 58.1 2.5E+02 0.0054 29.6 16.2 145 59-217 6-156 (413)
345 COG3947 Response regulator con 58.0 31 0.00067 33.3 6.2 69 124-194 281-354 (361)
346 PF02259 FAT: FAT domain; Int 57.5 2.3E+02 0.0049 28.9 22.9 69 225-321 144-212 (352)
347 KOG2659 LisH motif-containing 57.1 1.6E+02 0.0036 27.5 10.5 20 621-640 71-90 (228)
348 TIGR03504 FimV_Cterm FimV C-te 57.0 27 0.00058 22.9 4.0 19 623-641 8-26 (44)
349 COG2976 Uncharacterized protei 56.7 1.6E+02 0.0034 26.9 13.0 85 554-643 99-188 (207)
350 KOG4234 TPR repeat-containing 56.7 1.4E+02 0.003 27.4 9.5 53 203-255 144-196 (271)
351 KOG2063 Vacuolar assembly/sort 56.4 3.8E+02 0.0082 31.2 22.2 62 10-81 310-375 (877)
352 TIGR02508 type_III_yscG type I 55.6 1E+02 0.0023 24.5 8.3 50 554-609 49-98 (115)
353 KOG1464 COP9 signalosome, subu 55.4 2E+02 0.0043 27.6 16.3 157 239-423 39-219 (440)
354 COG1747 Uncharacterized N-term 55.4 2.9E+02 0.0062 29.5 20.3 179 160-371 68-247 (711)
355 PRK11619 lytic murein transgly 55.1 3.6E+02 0.0077 30.5 34.1 224 171-430 254-512 (644)
356 KOG2034 Vacuolar sorting prote 53.8 4E+02 0.0086 30.6 26.1 33 562-594 611-643 (911)
357 KOG4648 Uncharacterized conser 53.1 35 0.00075 33.7 5.8 86 61-148 106-191 (536)
358 PF10579 Rapsyn_N: Rapsyn N-te 52.1 41 0.00088 25.3 4.7 46 626-671 18-65 (80)
359 PF07163 Pex26: Pex26 protein; 51.9 1.6E+02 0.0035 28.6 9.8 84 335-418 90-181 (309)
360 KOG0991 Replication factor C, 51.9 2.1E+02 0.0046 27.0 12.1 92 98-192 170-272 (333)
361 PF11848 DUF3368: Domain of un 51.3 62 0.0013 21.6 5.2 28 593-620 16-43 (48)
362 COG2976 Uncharacterized protei 50.9 2E+02 0.0043 26.3 14.0 22 301-322 167-188 (207)
363 PF10579 Rapsyn_N: Rapsyn N-te 50.4 54 0.0012 24.7 5.1 44 523-566 20-65 (80)
364 PF11838 ERAP1_C: ERAP1-like C 49.7 2.9E+02 0.0062 27.8 19.3 176 493-673 56-261 (324)
365 PF14669 Asp_Glu_race_2: Putat 49.0 2.1E+02 0.0045 26.0 15.9 83 295-387 109-205 (233)
366 KOG2908 26S proteasome regulat 48.4 2.2E+02 0.0049 28.4 10.3 75 550-624 81-166 (380)
367 PF07575 Nucleopor_Nup85: Nup8 47.5 84 0.0018 34.8 8.8 238 48-337 294-539 (566)
368 KOG4507 Uncharacterized conser 47.5 2.1E+02 0.0046 30.9 10.7 140 119-262 568-709 (886)
369 PF11848 DUF3368: Domain of un 47.5 76 0.0017 21.2 5.2 34 624-657 12-45 (48)
370 PF11838 ERAP1_C: ERAP1-like C 47.4 3.1E+02 0.0067 27.6 14.8 146 104-254 147-302 (324)
371 KOG0508 Ankyrin repeat protein 45.8 3.8E+02 0.0083 28.2 14.2 47 506-552 333-384 (615)
372 PF14689 SPOB_a: Sensor_kinase 45.8 38 0.00083 24.2 3.8 46 630-677 6-51 (62)
373 PF11846 DUF3366: Domain of un 45.2 1E+02 0.0022 28.3 7.7 32 611-642 141-172 (193)
374 PF11663 Toxin_YhaV: Toxin wit 44.6 23 0.0005 29.7 2.8 26 595-622 111-136 (140)
375 smart00386 HAT HAT (Half-A-TPR 44.5 44 0.00095 19.3 3.6 29 207-235 1-29 (33)
376 PF08424 NRDE-2: NRDE-2, neces 44.3 3.5E+02 0.0077 27.3 16.5 80 175-255 48-130 (321)
377 PRK15180 Vi polysaccharide bio 44.2 4.1E+02 0.0088 28.0 33.6 89 171-261 302-391 (831)
378 KOG0687 26S proteasome regulat 43.9 3.4E+02 0.0075 27.1 13.7 67 582-648 107-178 (393)
379 KOG0403 Neoplastic transformat 43.8 4E+02 0.0087 27.8 21.1 332 37-407 199-586 (645)
380 COG0735 Fur Fe2+/Zn2+ uptake r 43.7 1.3E+02 0.0027 26.2 7.5 65 601-666 8-72 (145)
381 PF14853 Fis1_TPR_C: Fis1 C-te 43.4 95 0.0021 21.3 5.2 27 623-651 10-36 (53)
382 PF11846 DUF3366: Domain of un 43.0 99 0.0022 28.4 7.3 31 156-186 142-172 (193)
383 PF13762 MNE1: Mitochondrial s 42.3 2.3E+02 0.005 24.6 12.3 49 543-591 78-127 (145)
384 PF14853 Fis1_TPR_C: Fis1 C-te 42.1 1.1E+02 0.0024 21.0 6.1 35 401-436 7-41 (53)
385 cd00280 TRFH Telomeric Repeat 42.0 2E+02 0.0043 26.0 8.2 38 620-660 117-154 (200)
386 PF13934 ELYS: Nuclear pore co 41.4 3.2E+02 0.0069 25.9 10.5 46 489-536 90-135 (226)
387 KOG4507 Uncharacterized conser 40.3 2.5E+02 0.0055 30.3 10.0 64 296-360 645-708 (886)
388 KOG2908 26S proteasome regulat 40.2 2.6E+02 0.0056 28.0 9.4 74 513-586 79-163 (380)
389 TIGR02561 HrpB1_HrpK type III 39.9 2.5E+02 0.0055 24.4 14.0 96 340-437 22-120 (153)
390 PRK14956 DNA polymerase III su 39.4 5.2E+02 0.011 27.8 12.9 101 139-262 183-283 (484)
391 PF14689 SPOB_a: Sensor_kinase 38.5 77 0.0017 22.6 4.4 24 618-641 27-50 (62)
392 smart00028 TPR Tetratricopepti 38.4 64 0.0014 17.8 3.7 22 584-605 6-27 (34)
393 PF06552 TOM20_plant: Plant sp 38.2 3.1E+02 0.0066 24.8 11.8 43 243-324 96-138 (186)
394 PF10366 Vps39_1: Vacuolar sor 38.1 2.2E+02 0.0048 23.2 8.9 27 295-321 41-67 (108)
395 PF04762 IKI3: IKI3 family; I 37.9 7.7E+02 0.017 29.4 16.4 133 7-150 694-842 (928)
396 COG2178 Predicted RNA-binding 37.7 3.2E+02 0.007 25.0 9.5 16 626-641 133-148 (204)
397 PRK10564 maltose regulon perip 37.0 57 0.0012 31.9 4.6 44 154-197 252-296 (303)
398 PRK10564 maltose regulon perip 36.6 66 0.0014 31.5 5.0 44 507-550 254-298 (303)
399 PRK12798 chemotaxis protein; R 36.5 5.2E+02 0.011 27.0 19.0 194 64-262 124-330 (421)
400 PF09986 DUF2225: Uncharacteri 36.0 3.7E+02 0.0081 25.2 11.2 62 616-677 120-193 (214)
401 cd00280 TRFH Telomeric Repeat 35.9 2E+02 0.0044 25.9 7.3 20 167-186 120-139 (200)
402 COG5108 RPO41 Mitochondrial DN 35.6 1.7E+02 0.0036 32.1 8.0 43 295-340 67-115 (1117)
403 COG0735 Fur Fe2+/Zn2+ uptake r 35.4 1.3E+02 0.0029 26.1 6.3 45 334-378 26-70 (145)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 35.2 2.2E+02 0.0047 24.0 7.4 43 105-147 81-124 (126)
405 PRK08691 DNA polymerase III su 35.1 6.8E+02 0.015 28.5 12.9 101 138-262 180-280 (709)
406 COG5187 RPN7 26S proteasome re 33.8 4.6E+02 0.01 25.6 12.4 72 578-649 114-190 (412)
407 COG2909 MalT ATP-dependent tra 32.9 8.3E+02 0.018 28.3 27.0 318 69-420 298-684 (894)
408 KOG1464 COP9 signalosome, subu 31.2 4.9E+02 0.011 25.1 18.3 100 229-349 147-252 (440)
409 KOG0890 Protein kinase of the 30.7 1.4E+03 0.03 30.2 35.9 150 59-217 1390-1542(2382)
410 KOG4279 Serine/threonine prote 30.5 6.5E+02 0.014 28.4 11.3 121 458-580 179-321 (1226)
411 KOG2062 26S proteasome regulat 30.3 8.5E+02 0.018 27.6 33.2 87 624-715 511-599 (929)
412 KOG2066 Vacuolar assembly/sort 30.2 8.7E+02 0.019 27.7 27.9 75 123-205 393-467 (846)
413 PRK11639 zinc uptake transcrip 29.8 2.9E+02 0.0064 24.7 7.8 62 605-667 17-78 (169)
414 KOG2034 Vacuolar sorting prote 29.3 9.5E+02 0.021 27.8 30.4 171 200-421 365-556 (911)
415 PF12926 MOZART2: Mitotic-spin 29.2 2.7E+02 0.0059 21.5 6.4 43 108-150 29-71 (88)
416 PF10475 DUF2450: Protein of u 29.1 5.8E+02 0.013 25.3 12.3 109 127-247 103-217 (291)
417 PRK12356 glutaminase; Reviewed 29.0 6.1E+02 0.013 25.5 10.8 157 497-675 86-257 (319)
418 PF12862 Apc5: Anaphase-promot 28.9 2.4E+02 0.0052 22.1 6.4 24 233-256 47-70 (94)
419 PF12862 Apc5: Anaphase-promot 28.8 2.9E+02 0.0062 21.6 7.2 23 620-642 47-69 (94)
420 PRK09462 fur ferric uptake reg 28.7 2.8E+02 0.006 24.1 7.3 62 604-666 7-69 (148)
421 PRK07764 DNA polymerase III su 28.5 7.9E+02 0.017 28.8 12.6 101 138-261 181-281 (824)
422 KOG1498 26S proteasome regulat 28.4 6.7E+02 0.015 25.9 17.5 86 483-572 137-240 (439)
423 PRK09687 putative lyase; Provi 28.4 5.9E+02 0.013 25.1 25.8 17 121-137 67-83 (280)
424 TIGR02508 type_III_yscG type I 28.4 3.1E+02 0.0068 22.0 9.6 52 485-539 47-98 (115)
425 KOG4567 GTPase-activating prot 28.2 4.8E+02 0.01 25.9 9.0 57 529-590 263-319 (370)
426 KOG3807 Predicted membrane pro 28.2 5.6E+02 0.012 25.6 9.5 57 583-641 279-338 (556)
427 KOG3364 Membrane protein invol 28.1 2.7E+02 0.006 23.7 6.5 83 84-166 29-115 (149)
428 PRK10941 hypothetical protein; 27.9 4.5E+02 0.0097 25.8 9.2 79 124-204 183-262 (269)
429 KOG4521 Nuclear pore complex, 27.5 1.2E+03 0.025 28.3 14.2 123 90-215 986-1124(1480)
430 PRK14700 recombination factor 27.4 6.2E+02 0.014 25.1 14.5 157 83-254 63-228 (300)
431 KOG0991 Replication factor C, 27.3 5.5E+02 0.012 24.4 14.8 92 168-262 169-273 (333)
432 KOG4642 Chaperone-dependent E3 27.2 5.6E+02 0.012 24.5 10.7 22 298-319 83-104 (284)
433 cd08819 CARD_MDA5_2 Caspase ac 27.2 3E+02 0.0065 21.4 7.2 66 106-178 21-86 (88)
434 PHA03100 ankyrin repeat protei 26.8 8.2E+02 0.018 26.3 12.8 208 178-428 48-277 (480)
435 PF09477 Type_III_YscG: Bacter 26.7 3.5E+02 0.0076 22.0 8.6 88 524-619 21-108 (116)
436 COG5108 RPO41 Mitochondrial DN 26.7 4E+02 0.0087 29.4 8.9 90 298-390 33-130 (1117)
437 PRK13342 recombination factor 26.7 7.8E+02 0.017 26.0 17.5 35 306-340 243-277 (413)
438 PF06957 COPI_C: Coatomer (COP 26.6 5.8E+02 0.013 26.9 10.1 32 330-361 302-333 (422)
439 PRK09857 putative transposase; 26.5 4.4E+02 0.0096 26.2 9.1 58 590-648 217-274 (292)
440 PRK11639 zinc uptake transcrip 26.4 4E+02 0.0086 23.9 8.0 37 593-629 39-75 (169)
441 PF04762 IKI3: IKI3 family; I 26.0 1.2E+03 0.026 27.9 15.6 28 546-573 814-843 (928)
442 PF11663 Toxin_YhaV: Toxin wit 26.0 76 0.0016 26.8 3.0 21 101-121 109-129 (140)
443 PRK14951 DNA polymerase III su 25.7 9.9E+02 0.021 26.9 13.0 33 229-262 253-285 (618)
444 KOG1258 mRNA processing protei 25.7 9.1E+02 0.02 26.5 40.5 181 476-663 296-489 (577)
445 PF10366 Vps39_1: Vacuolar sor 25.7 3.7E+02 0.008 21.9 7.6 24 125-148 42-65 (108)
446 PF15297 CKAP2_C: Cytoskeleton 25.6 7.2E+02 0.016 25.2 10.1 45 616-660 142-186 (353)
447 PF03745 DUF309: Domain of unk 25.5 1.9E+02 0.0041 20.7 4.6 49 61-109 8-61 (62)
448 PF12926 MOZART2: Mitotic-spin 25.4 3.2E+02 0.007 21.1 7.9 42 565-606 29-70 (88)
449 PRK09462 fur ferric uptake reg 25.4 4.2E+02 0.0091 23.0 7.9 35 595-629 33-67 (148)
450 PRK06645 DNA polymerase III su 25.3 9.1E+02 0.02 26.3 12.2 103 138-262 189-292 (507)
451 COG2178 Predicted RNA-binding 25.0 5.4E+02 0.012 23.6 10.2 14 242-255 84-97 (204)
452 KOG0686 COP9 signalosome, subu 24.4 8.2E+02 0.018 25.5 13.7 173 230-436 153-351 (466)
453 cd07153 Fur_like Ferric uptake 24.3 1.6E+02 0.0035 24.1 4.9 47 93-139 6-52 (116)
454 PF09454 Vps23_core: Vps23 cor 24.0 1.7E+02 0.0038 21.1 4.2 25 548-572 12-36 (65)
455 PF04034 DUF367: Domain of unk 23.9 4.2E+02 0.009 22.3 6.8 59 579-640 66-125 (127)
456 cd07153 Fur_like Ferric uptake 23.8 1.8E+02 0.0038 23.9 5.0 48 620-667 6-53 (116)
457 PF08424 NRDE-2: NRDE-2, neces 23.6 7.7E+02 0.017 24.9 15.4 47 210-256 48-94 (321)
458 COG2812 DnaX DNA polymerase II 23.5 9.8E+02 0.021 26.1 12.2 102 137-262 179-280 (515)
459 COG5159 RPN6 26S proteasome re 23.3 7.1E+02 0.015 24.4 17.0 159 58-216 9-188 (421)
460 PF11817 Foie-gras_1: Foie gra 22.9 3.1E+02 0.0067 26.4 7.2 57 162-218 182-243 (247)
461 PF07064 RIC1: RIC1; InterPro 22.7 7.1E+02 0.015 24.2 15.2 59 299-357 185-249 (258)
462 PRK14958 DNA polymerase III su 22.6 1E+03 0.022 26.0 13.2 100 139-262 181-280 (509)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 22.6 4.7E+02 0.01 22.0 9.5 44 245-318 81-124 (126)
464 KOG4521 Nuclear pore complex, 22.5 1.4E+03 0.031 27.6 16.6 124 546-677 985-1130(1480)
465 PRK09857 putative transposase; 22.3 5.8E+02 0.013 25.4 9.0 66 547-613 209-274 (292)
466 PRK14963 DNA polymerase III su 22.0 1E+03 0.023 25.9 12.7 32 230-262 245-276 (504)
467 PF03745 DUF309: Domain of unk 21.7 2E+02 0.0044 20.5 4.1 47 304-350 10-61 (62)
468 PF09454 Vps23_core: Vps23 cor 21.5 2E+02 0.0043 20.9 4.1 49 577-626 6-54 (65)
469 smart00804 TAP_C C-terminal do 20.8 93 0.002 22.4 2.3 24 135-158 38-61 (63)
470 PF10255 Paf67: RNA polymerase 20.6 3.9E+02 0.0085 27.9 7.5 101 191-320 70-191 (404)
471 PF01475 FUR: Ferric uptake re 20.6 1.8E+02 0.0038 24.1 4.4 49 619-667 12-60 (120)
472 KOG2422 Uncharacterized conser 20.6 1.1E+03 0.025 25.7 12.0 180 4-184 281-492 (665)
473 PF09670 Cas_Cas02710: CRISPR- 20.6 9.7E+02 0.021 24.9 11.5 123 129-255 138-269 (379)
474 PF14669 Asp_Glu_race_2: Putat 20.6 6.7E+02 0.014 23.0 15.0 71 231-318 136-206 (233)
475 KOG4642 Chaperone-dependent E3 20.5 7.6E+02 0.016 23.6 10.6 118 554-675 20-143 (284)
476 PF11123 DNA_Packaging_2: DNA 20.1 3.5E+02 0.0075 20.1 4.9 29 103-132 13-41 (82)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.7e-88 Score=773.29 Aligned_cols=658 Identities=15% Similarity=0.155 Sum_probs=609.6
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh
Q 004269 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (764)
....++..|++.|+.++|. .+|+++ |++...+|+.+|.+|++.|++++|+++|++|...|+.||..
T Consensus 123 ~~n~li~~~~~~g~~~~A~-~~f~~m-------------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~ 188 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAW-YVFGKM-------------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188 (857)
T ss_pred HHHHHHHHHHhCCChHHHH-HHHhcC-------------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 3456888899999999999 666655 33457789999999999999999999999999999999999
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
||+.++++|+..+++..+.+++..|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+ ||..+||+||.+|
T Consensus 189 t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~ 263 (857)
T PLN03077 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGY 263 (857)
T ss_pred HHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999963 6889999999999
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh-cCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+++.+.+++..+.+ +..||..+|++|+.+|+++|++++|.
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 69999999999999999999999999
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 327 (764)
++|++|.+ |+. .+||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 344 ~vf~~m~~----~d~-------------------------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 344 KVFSRMET----KDA-------------------------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHhhCCC----CCe-------------------------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999964 444 6999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Q 004269 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407 (764)
Q Consensus 328 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 407 (764)
..||++++.+|++.|+++.|.++++.|.+.|+.|+..++++|+++|+++|++++|.++|++|.+. |.++||++|.+|++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~ 467 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRL 467 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 004269 408 MDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487 (764)
Q Consensus 408 ~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (764)
.|+.++|+.+|++|..+++||..||+.+|.+|++.|.+ +.+..++..+.+.|+.++..++|+|+++|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l-------------~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL-------------MCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH-------------HHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 99999999999999889999999999999999998765 55667888999999999999999999999
Q ss_pred HhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHH
Q 004269 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567 (764)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 567 (764)
+++|++++|.++|+.+ .+|.++||++|.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|
T Consensus 535 ~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 9999999999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004269 568 SMMV-RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646 (764)
Q Consensus 568 ~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 646 (764)
+.|. +.|+.|+..+|++++++|++.|++++|.+++++| +++||..+|++|+.+|..+|+.+.++...+++.+ +.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~ 687 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LD 687 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hC
Confidence 9999 6799999999999999999999999999999998 4799999999999999999999999999999885 67
Q ss_pred CCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHhhhcccc-CchHhhhHHHHHhhhhccHHH-------------------
Q 004269 647 PDPSTCHF-VFSGYVNCGFHNSAMEALQVLSMRMLCEEV-STLEEKRSDFEDLILAEDSEA------------------- 705 (764)
Q Consensus 647 p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------- 705 (764)
|+...++. |.+.|+..|+|++|.++++.|+.+++++.+ ++|+++.+.++.|..++..+.
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 87655555 556999999999999999999999998775 788777666555554433221
Q ss_pred -------------HHHHHHHhhhcchhhHHHHhhhhhhhhhhcCCccccCccc
Q 004269 706 -------------ESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDR 745 (764)
Q Consensus 706 -------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~g~~~~~~~~~ 745 (764)
+.+..+.+..|+|+||++++|+++ ++|.||+..++-
T Consensus 768 g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~----~~~~~i~i~knl 816 (857)
T PLN03077 768 GLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINT----VPGMPIWVTKNL 816 (857)
T ss_pred CcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcC----CCCCeEEEeCCC
Confidence 112234467799999999999999 999999998764
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-80 Score=707.41 Aligned_cols=645 Identities=15% Similarity=0.149 Sum_probs=542.7
Q ss_pred hhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004269 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
+.++...++.++..+++.|++++|..+|+.|...|++|+..+|..++.+|.+.+.++.+.+++..+.+.+..++...+|.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+|.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|...+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999963 7899999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh-cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 208 NLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 208 ~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
++..+.+++..+.+ +..||..+++.|+.+|+++|+++.|.++|++|.+ |+.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~------------------------ 253 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDC------------------------ 253 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCc------------------------
Confidence 99999999999997 6999999999999999999999999999999964 443
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 366 (764)
++||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|
T Consensus 254 -------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 254 -------ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred -------chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCc
Q 004269 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAP 445 (764)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~ 445 (764)
++|+.+|+++|++++|.++|++|... |.++||++|.+|++.|++++|+++|++|.+ |+.||..||+.++.+|++.|++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 99999999999999999999999987 999999999999999999999999999999 9999999999999999998865
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh
Q 004269 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 525 (764)
+.+..++..+.+.|+.|+..++++|+++|+++|++++|.++|+++ ..+|.++||++|.+|++.|+.
T Consensus 406 -------------~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 406 -------------DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI-PEKDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred -------------HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCeeeHHHHHHHHHHCCCH
Confidence 455677888999999999999999999999999999999999998 468999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC---------------------------
Q 004269 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ--------------------------- 578 (764)
Q Consensus 526 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~--------------------------- 578 (764)
++|+.+|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.+|
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999986 5999999999999999999999999999888888877555
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHH
Q 004269 579 ---TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH-QNKVQPDPSTCHF 654 (764)
Q Consensus 579 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ 654 (764)
..+||+||.+|++.|+.++|.++|++|.+.|++||..||+++|.+|.+.|++++|.++|++|. +.|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 455555555555555555555566666555566666666666666666666666666666665 3455566666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHH-HHHhhhcchhhHHHHhhhhhhhhh
Q 004269 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRI-LQFCEDSNENLAFTAALLQLRWCT 733 (764)
Q Consensus 655 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~ 733 (764)
++.+|++.|++++|.+++++|. ++|+...| ..++..+..+++.+..... -+.+...++..+.+..|.++ +.
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~---~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~--ya 702 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMP---ITPDPAVW---GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL--YA 702 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCC---CCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH--HH
Confidence 6666666666666666555542 33333333 2233333333333322222 22234455555656666655 34
Q ss_pred hcCCcccc----CcccccCccccccCc
Q 004269 734 IVGFPISW----SLDRASGLEDSQTNS 756 (764)
Q Consensus 734 ~~g~~~~~----~~~~~~~~~~~~~~~ 756 (764)
..|.+-.- ..++..|+...|++|
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 44554432 255558888888776
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-71 Score=623.16 Aligned_cols=531 Identities=15% Similarity=0.189 Sum_probs=467.6
Q ss_pred CChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh-cCCCCHhhHHHH
Q 004269 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKF 233 (764)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 233 (764)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|.+.++++.+.+++..+.+ ++.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345567777777777777777777777776543 567777777777777777777777777777765 467777777777
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHH
Q 004269 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 313 (764)
+.+|++.|+++.|.++|++|.+ |+. ++||++|.+|++.|++++|+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~-------------------------------~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNL-------------------------------ASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCe-------------------------------eeHHHHHHHHHHCcCHHHHH
Confidence 8888899999999999999864 454 69999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004269 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 314 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 393 (764)
++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|...
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~- 288 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK- 288 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCC
Q 004269 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472 (764)
Q Consensus 394 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (764)
|+++||+||.+|++.|++++|+++|++|.+ |+.||..||++++.+|++.|.+ +.+..++..|.+.|
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~-------------~~a~~i~~~m~~~g 355 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL-------------EHAKQAHAGLIRTG 355 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch-------------HHHHHHHHHHHHhC
Confidence 999999999999999999999999999999 9999999999999999998865 45567788899999
Q ss_pred CCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004269 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 473 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
+.||..++++|+++|+++|++++|.++|+++ ..||+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRM-PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999998 568999999999999999999999999999999999999999999999
Q ss_pred HHHhhCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004269 553 CCSIIRCFKSASALVSMMVR-DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631 (764)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 631 (764)
+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| +++|+..+|++|+.+|...|+++
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999986 699999999999999999999999999999876 68999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccc-cCchHhhhHHHHHhhhhccHH-----
Q 004269 632 VIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFEDLILAEDSE----- 704 (764)
Q Consensus 632 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----- 704 (764)
.|..+++++. ++.|+ ..+|..|+++|++.|+|++|.++++.|+.+|+++. +++|.++...++.|+.++..+
T Consensus 512 ~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 512 LGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 9999999997 56675 67999999999999999999999999999998644 367766554444443332211
Q ss_pred ----------------------------HHHHHHHHhhhcchhhHHHHhhhhhhhhhhcCCccccCccc
Q 004269 705 ----------------------------AESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDR 745 (764)
Q Consensus 705 ----------------------------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~g~~~~~~~~~ 745 (764)
...+..+.+..|+|+||++++|+++ ++|.||+..++-
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~----~~~~~i~i~knl 654 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT----SEWTPLQITQSH 654 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC----CCCCeEEEecCC
Confidence 0112233467799999999999999 999999998764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-68 Score=597.50 Aligned_cols=517 Identities=16% Similarity=0.231 Sum_probs=473.8
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHH
Q 004269 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 197 (764)
..++...|..++..|++.|++++|.++|++|.+..-++++..+++.++.+|.+.|.+++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356778888999999999999999999999986544567888888999999999999999999998875 8999999
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHh-cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
.+|++|++.|+++.|.++|+.|.+ +..||..+|+.||.+|++.|+++.|.++|++|.+.|+.|+.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv-------------- 507 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV-------------- 507 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH--------------
Confidence 999999999999999999999987 68999999999999999999999999999999999999887
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
.+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus 508 -----------------vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 508 -----------------HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred -----------------HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999976
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHH
Q 004269 357 --NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430 (764)
Q Consensus 357 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~ 430 (764)
.|+.||..+|+++|.+|++.|++++|.++|+.|.+.+ +..+|+++|.+|++.|++++|+++|++|.+ |+.||..
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 6789999999999999999999999999999999875 678999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc---CCCC
Q 004269 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS---KTPL 507 (764)
Q Consensus 431 t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~ 507 (764)
||+.++.+|++.|+. +.+..++..|.+.|+.|+..+|++|+.+|+++|++++|.++|+++ +..|
T Consensus 651 TynsLI~a~~k~G~~-------------eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 651 FFSALVDVAGHAGDL-------------DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHHHHHHhCCCH-------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999988765 445567778999999999999999999999999999999999876 4689
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
|..+||+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 588 ILLD----Y-------------------GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 588 ~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
.|.+ + +..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6432 2 2246899999999999999999999999988888999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcccc
Q 004269 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684 (764)
Q Consensus 645 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 684 (764)
..|+..+|++|+.++.+. .++|..++++|...|+.|..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 999999999999998432 36899999999999998875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-67 Score=584.70 Aligned_cols=516 Identities=16% Similarity=0.215 Sum_probs=479.5
Q ss_pred CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
.++...|..++..|.+.|+++.|.++|++|.+.|+ +++..+++.++..|++.|.+++|..+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 56677899999999999999999999999999985 67888889999999999999999999999863 8999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh-cCCCCHhhHHHHHHHhhccC
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 241 (764)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+ +..||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999986 68999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
++++|.++|+.|.+.|+.|+. .+||.||.+|++.|++++|.++|++|..
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~-------------------------------vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDR-------------------------------VVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCH-------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999986
Q ss_pred --CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCc
Q 004269 322 --LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396 (764)
Q Consensus 322 --~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~ 396 (764)
.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...+ |..
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999876 888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCc
Q 004269 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475 (764)
Q Consensus 397 ~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (764)
+|+++|.+|++.|++++|.++|++|.+ |+.||..+|+++|.+|++.|.++++ ..++..|...|+.|
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA-------------~~lf~eM~~~g~~P 717 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA-------------LELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-------------HHHHHHHHHcCCCC
Confidence 999999999999999999999999999 9999999999999999999876444 45566788889999
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004269 476 SHISMKNLLKALGAEGMIRELIQYFCDS---KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
|..+|++|+.+|++.|++++|.++|++| +..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999876 5689999999999999999999999999999999999999999999997
Q ss_pred HHHh----h-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004269 553 CCSI----I-------------------RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 553 ~~~~----~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
.|.+ . +..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6542 1 1236799999999999999999999999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 610 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
..|+..+|++||+++.+. .++|..++++|...|+.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999998432 468999999999999999986
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-63 Score=556.88 Aligned_cols=468 Identities=15% Similarity=0.138 Sum_probs=415.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccC-CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
.+|..+|..+.+.|++++|+++|+.|...+ ..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|+.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 478899999999999999999999998764 6799999999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|++.|++++|.++|++|.+ ||..+||+++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999963 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
+.+++..+.+ +..+|..+|++|+.+|+++|++++|.++|+.|.+ ++.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~---------------------------- 290 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTT---------------------------- 290 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CCh----------------------------
Confidence 9999999987 6899999999999999999999999999999964 333
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 370 (764)
++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..++++|+
T Consensus 291 ---vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 291 ---VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred ---hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhc
Q 004269 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEG 449 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~ 449 (764)
++|+++|++++|.++|++|... |..+||+||.+|++.|+.++|+++|++|.+ |+.||..||+.+|.+|++.|..+++
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a- 445 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG- 445 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH-
Confidence 9999999999999999999987 999999999999999999999999999999 9999999999999999888765443
Q ss_pred hhhhhhhhHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHH
Q 004269 450 NMFSQVDSAKRINAIEMDMAR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528 (764)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 528 (764)
..++..|.+ .|+.|+..+|+.++++|++.|++++|.++|+++...|+..+|++++.+|..+|+.+.|
T Consensus 446 ------------~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 446 ------------WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred ------------HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 344445543 4777777777777777777777777777777776667777777777777777777777
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC
Q 004269 529 MEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576 (764)
Q Consensus 529 ~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 576 (764)
..+++++.+. .| +..+|..+++.|++.|++++|.++++.|.+.|++
T Consensus 514 ~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 514 RLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 7777766543 34 3456777777777777777777777777766654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5e-32 Score=319.85 Aligned_cols=630 Identities=11% Similarity=-0.017 Sum_probs=488.0
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh
Q 004269 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (764)
........+...|++++|. ..++ ..+...|+... .+......+...|++++|...|+.+.... +.+..
T Consensus 263 ~~~~~~~~~~~~~~~~~A~-~~~~---------~~l~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 330 (899)
T TIGR02917 263 AHYLKALVDFQKKNYEDAR-ETLQ---------DALKSAPEYLP-ALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQ 330 (899)
T ss_pred HHHHHHHHHHHhcCHHHHH-HHHH---------HHHHhCCCchh-HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 3444555667889999999 4443 33444455322 23334556778999999999999988765 44566
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
.+..+...+...|+++.|.+.++.+...+ +.+...+..+...|.+.|++++|.++|+++.+.. +.+...+..+...+
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISK 407 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 67778888889999999999999998765 4567788889999999999999999999886532 33556778888889
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHH
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
...|++++|.+.|+.+.+.... .......++..+...|++++|.++++.+.+..+.+..++..+..+|...|++++|..
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999998876533 334556677788899999999999999998888888999999999999999999999
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 328 (764)
.|+++.+ ..|+. ...+..+...+...|++++|.+.|+++...+ +.+.
T Consensus 487 ~~~~a~~--~~~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 487 AFEKALS--IEPDF------------------------------FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHHHHHh--hCCCc------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 9999887 44543 1477788888999999999999999998764 3356
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHH
Q 004269 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACD 406 (764)
Q Consensus 329 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~ 406 (764)
.++..+...+...|+.++|..+++.+.+.+.. +...+..++..|.+.|++++|..+++.+.... +...|..+..+|.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 67888888888999999999999998877543 56677788899999999999999999987653 5677888999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004269 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486 (764)
Q Consensus 407 ~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (764)
+.|++++|...|+++.+..+.+...+..+...+...|++.++...+ ..+.+. .+.+...+..+...
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------------~~~~~~-~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL-------------KRALEL-KPDNTEAQIGLAQL 678 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH-------------HHHHhc-CCCCHHHHHHHHHH
Confidence 9999999999999988722334556667777777777665544333 223322 23456778888999
Q ss_pred HHhcCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHH
Q 004269 487 LGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564 (764)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 564 (764)
+...|++++|..+++.+. .+.+...+..+...+...|++++|+..|+++...+ |+..++..+..++.+.|++++|.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 999999999999987762 23456678888888899999999999999988864 55677778888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
..++.+.+.. +.+...+..+...|.+.|++++|.++|+++.+.. ++++.+++.+...+...|+ .+|+..++++.+.
T Consensus 757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~- 832 (899)
T TIGR02917 757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL- 832 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-
Confidence 9998888764 4567788888899999999999999999998654 5678888999999999999 7899999998863
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHHHHh
Q 004269 645 VQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFC 713 (764)
Q Consensus 645 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
.|+ ..++..+..++...|++++|.++++++...+.. ...........+...++.+.+...++.+
T Consensus 833 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 833 -APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE----AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 445556667888999999999999987664432 2222344556667777777777666543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.9e-31 Score=311.44 Aligned_cols=653 Identities=11% Similarity=0.001 Sum_probs=516.4
Q ss_pred cccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccC
Q 004269 3 RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH 82 (764)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~ 82 (764)
.|.....+..++..+...|++++|. ..++.+ ....|......+ .....+...|++++|+..|+.+.+.+
T Consensus 223 ~p~~~~~~~~~~~~~~~~g~~~~A~-~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 223 RPNNPAVLLALATILIEAGEFEEAE-KHADAL---------LKKAPNSPLAHY-LKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH---------HHhCCCCchHHH-HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4666677888999999999999999 554443 333444333222 23344667899999999999998765
Q ss_pred CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 83 HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
. .....+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.+.. +.+...++
T Consensus 292 ~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 367 (899)
T TIGR02917 292 P-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALS 367 (899)
T ss_pred C-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 2 223344455667778899999999999998874 4567788888999999999999999999987543 44667899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+.+.|++++|.++|+.+.+..+ .+...+..+...+...|++++|.+.++.+.+..+.+......++..+.+.|+
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 999999999999999999999987643 2566777888889999999999999999988766677788888999999999
Q ss_pred HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
+++|..+++.+.+. .|+. ..+|+.+...+...|++++|.+.|+++.+.
T Consensus 447 ~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 447 FDKALAAAKKLEKK--QPDN------------------------------ASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHHHHHHh--CCCC------------------------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 99999999999873 3332 158999999999999999999999999875
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHH
Q 004269 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSA 400 (764)
Q Consensus 323 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~ 400 (764)
. +.+...+..+...+...|++++|..+++.+.+.+.. +..++..+...+.+.|+.++|...|+++.... +...+..
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 3 234556777888899999999999999999987654 67788899999999999999999999986654 5667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHH
Q 004269 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 401 li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
+...|.+.|++++|..+++.+....+.+..++..+...+...|++.++...+. .+.+.. +.+...+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK-------------KLLALQ-PDSALAL 638 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------------HHHHhC-CCChHHH
Confidence 99999999999999999999988555677888888889988887765554432 333322 3356678
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhc-C-CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 004269 481 KNLLKALGAEGMIRELIQYFCDS-K-TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 558 (764)
..+...|.+.|++++|...|++. . .+.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 88999999999999999999875 2 33457799999999999999999999999999875 457778888889999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004269 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 638 (764)
++++|...|+.+.+.+ |+..++..+..++.+.|+.++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999865 555778889999999999999999999998753 5678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHHHH-hhhcc
Q 004269 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQF-CEDSN 717 (764)
Q Consensus 639 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 717 (764)
++.+.. +++...+..+...+...|+ ++|++++++..... +...... ......+...++.+.+...++. +...+
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAIL--DTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999753 4567788888889999999 88999999775532 2221111 1122223334555555544433 44444
Q ss_pred hhhHHHHhhhhh
Q 004269 718 ENLAFTAALLQL 729 (764)
Q Consensus 718 ~~~a~~~~l~~~ 729 (764)
.+..+...+...
T Consensus 869 ~~~~~~~~l~~~ 880 (899)
T TIGR02917 869 EAAAIRYHLALA 880 (899)
T ss_pred CChHHHHHHHHH
Confidence 444444444433
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.3e-22 Score=239.04 Aligned_cols=619 Identities=11% Similarity=0.008 Sum_probs=430.5
Q ss_pred CcccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhh---------------HHHHHHHHHhhC
Q 004269 2 YRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKA---------------TQMQIVDALCRG 66 (764)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~---------------~~~~i~~~~~~~ 66 (764)
..|.+...+...+..+...|+.++|. ..++ ......|+..... .......+...|
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~-~~l~---------~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQ-KLLD---------RLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHH-HHHH---------HHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 35777778888999999999999999 4443 3455555533321 233345678899
Q ss_pred CcchHHHHHHhccccCCCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
++++|++.|+.+...+ +++... ...........|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..|
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998765 334322 1112222334589999999999999985 557778889999999999999999999
Q ss_pred HHHhhhcCCC---------------C---ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 146 YFLGERYGIY---------------P---ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 146 ~~m~~~~~~~---------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+++.+..... + ....+...+..+-.......|...+..+......|+... ......+...|
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g 283 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSG 283 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCC
Confidence 9985421100 0 001122222222333334556666666554433343322 12344567899
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccc
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
++++|...|++.++..+.+..++..+..+|.+.|++++|...|++..+ ..|+..........+
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~--~~p~~~~~~~~~~ll--------------- 346 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA--LDPHSSNRDKWESLL--------------- 346 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCccchhHHHHHH---------------
Confidence 999999999999998888999999999999999999999999999987 334321000000000
Q ss_pred cchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (764)
.....+........+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+.... +...+.
T Consensus 347 -~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 347 -KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred -HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 00000011223456788999999999999999863 224556777888899999999999999999987544 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-----------CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-HHHHHHH
Q 004269 368 TLSVECSKALELDLAEALLDQISRCT-----------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD-IRTYELL 435 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~-~~t~~~l 435 (764)
.+...|. .++.++|..+++.+.... ....+..+...+...|++++|+..|++..+ ..|+ ...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~-~~P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA-LDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 6777764 467899999887764321 123455667788899999999999999987 3354 4445555
Q ss_pred HHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC---CCh---
Q 004269 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGT--- 509 (764)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~--- 509 (764)
...+...|++.++.. .+..+.+.. +.+...+..+...+...++.++|...++..... ++.
T Consensus 502 A~~~~~~G~~~~A~~-------------~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 502 AQDLRQAGQRSQADA-------------LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred HHHHHHcCCHHHHHH-------------HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 566666666544443 333333322 223334444555667889999999999876321 111
Q ss_pred ------hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 510 ------PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583 (764)
Q Consensus 510 ------~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 583 (764)
..+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|...|+...+.. +.+...+.
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~ 641 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARL 641 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 1123445678889999999999882 24455667778888999999999999999999864 33577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHH
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV--QP---DPSTCHFVFSG 658 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~ll~~ 658 (764)
.+...|...|+.++|++.++...+.. +.+..++..+...+...|++++|.++++++....- .| +...+..+...
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 99999999999999999999887532 23566777788889999999999999999986421 12 12345555678
Q ss_pred HHhcCChHHHHHHHHHHH
Q 004269 659 YVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 659 ~~~~g~~~~a~~~~~~~~ 676 (764)
+...|++++|++.++...
T Consensus 721 ~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 899999999999999864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=7.1e-21 Score=224.48 Aligned_cols=595 Identities=12% Similarity=0.028 Sum_probs=397.1
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhc
Q 004269 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (764)
|...+......++.+.|. ..+.+...+.|+. ...+..++..+...|+.++|.+.++++.+.. |.+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~----------~~l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~ 98 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVR----------QSLYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAY 98 (1157)
T ss_pred HHHHHHHHHhhCChHHHH----------HHHHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHH
Confidence 555666667777777777 4444456666764 4445566777888999999999999988776 222222
Q ss_pred H----------------HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH-HHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004269 90 F----------------FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC-YLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 90 ~----------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~ 152 (764)
. ..+.+.+...|++++|.+.|+.+.+.+ +|+... ...+.......|+.++|++.|+++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~ 177 (1157)
T PRK11447 99 RSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY 177 (1157)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC
Confidence 1 223345677899999999999988764 344321 1111222234688999999999987653
Q ss_pred CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCC--hhhH-----------------HHHHHHHHhhcChhHHH
Q 004269 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--EVTY-----------------TELLKLAVWQKNLSAVH 213 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~-----------------~~ll~~~~~~~~~~~a~ 213 (764)
+.+...+..+...+...|+.++|+..|+++........ ...| ...+..+-.....+.+.
T Consensus 178 --P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 178 --PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 33555777888888889999999999998865321100 0011 11111111111223344
Q ss_pred HHHHHHHhc-CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 214 EIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 214 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
..+....+. ..|.. ........+...|++++|...|++..+ ..|+.
T Consensus 256 ~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~--~~P~~------------------------------ 302 (1157)
T PRK11447 256 SQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVR--ANPKD------------------------------ 302 (1157)
T ss_pred HHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------
Confidence 444333322 11221 122345567788999999999999988 45554
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHH------------HHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYD------------GFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
...+..+...+.+.|++++|+..|++..+.. |+.. .+. .....+.+.|++++|...|+++.+.
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2578889999999999999999999988753 3321 111 1233566889999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCC-C-----
Q 004269 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP-D----- 428 (764)
Q Consensus 358 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p-~----- 428 (764)
... +...+..+...|...|++++|++.|++..... +...+..+...|. .++.++|+.+++.+.. .... .
T Consensus 381 ~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 381 DNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 644 56667788899999999999999999987653 4445666666664 4678999888876543 1100 0
Q ss_pred --HHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CC
Q 004269 429 --IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KT 505 (764)
Q Consensus 429 --~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~ 505 (764)
...+..+-..+...|++ +.+...+....+... .+...+..+...|.+.|++++|...|++. ..
T Consensus 459 l~~~~~~~~a~~~~~~g~~-------------~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKW-------------AQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 00111122222233333 333334444443322 24556777888999999999999999875 22
Q ss_pred CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhhCChhHHHHHHHHHHHCCC
Q 004269 506 PL-GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA---------TYNIMIDCCSIIRCFKSASALVSMMVRDGF 575 (764)
Q Consensus 506 ~~-~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 575 (764)
.| +...+..+...+...++.++|+..++.+......++.. .+......+...|+.++|..+++. .
T Consensus 525 ~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 33 34445455556677899999999998875433222221 123445667888999999999872 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 004269 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-STCHF 654 (764)
Q Consensus 576 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ 654 (764)
+.+...+..+...+.+.|+.++|++.|++..+.. +.+...+..+...+...|+.++|++.++...+ ..|+. .....
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~ 676 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRR 676 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHH
Confidence 4566677889999999999999999999998753 44678999999999999999999999998875 45554 44555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh
Q 004269 655 VFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 655 ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
+..++...|++++|.++++.+...
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 666889999999999999987653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=2.3e-18 Score=193.49 Aligned_cols=601 Identities=10% Similarity=-0.003 Sum_probs=391.8
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHH
Q 004269 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY 96 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 96 (764)
+...|++++|+ ..|.+.+...|+. ......+...|...|+.++|+..+++..+.. |+...|..++..
T Consensus 54 ~~~~Gd~~~A~----------~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~ 120 (987)
T PRK09782 54 AQKNNDEATAI----------REFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAA 120 (987)
T ss_pred HHhCCCHHHHH----------HHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 44459999999 6666678888887 6666788899999999999999999998876 444444444433
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH--------HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH-HHH
Q 004269 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA--------LCKGGYLEEASNLIYFLGERYGIYPILPVYNSF-LGA 167 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-i~~ 167 (764)
+ ++.+.|.++++++.+.. +-+..++..+... |.+. ++|.+.++ .. .....|+..+.... ...
T Consensus 121 i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr-~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DA-TFAASPEGKTLRTDLLQR 191 (987)
T ss_pred h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hh-hhCCCCCcHHHHHHHHHH
Confidence 3 78889999999999985 4456666666655 6665 44444444 22 22233444444544 899
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW-QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
|.+.|++++|++++..+.+.++. +..-...|-.+|.. .++ +.+..++.. ....++..+..+...|.+.|+.+.|
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~---~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ---GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch---hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999998644 34445566667776 366 777777543 3447889999999999999999999
Q ss_pred HHHHHHHHHhhcc-CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004269 247 YETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 325 (764)
.+++.++...-.. |.........+........-..+... +-.+-.....-.++..+.+.++++.+.++.. +.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 9999998763222 22111111111111111000000000 0000001223344677888888886665522 34
Q ss_pred CCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC----ccH
Q 004269 326 PSSHTYDGFIRAIV--SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TNP----KPF 398 (764)
Q Consensus 326 p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~----~~~ 398 (764)
|.... ..++... ..+...++...+..|.+.... +....--+.....+.|+.++|.++|...... ++. ..-
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 44432 2333333 336677777777777776333 5555555566677889999999999888763 222 233
Q ss_pred HHHHHHHHhcCC---HHHHHHH----------------------HHHHhc--cCCCC---HHHHHHHHHHhcCCCCchhh
Q 004269 399 SAFLAACDTMDK---PERAIKI----------------------FAKMRQ--KLRPD---IRTYELLFSLFGNVNAPYEE 448 (764)
Q Consensus 399 ~~li~~~~~~~~---~~~a~~l----------------------~~~m~~--~~~p~---~~t~~~ll~~~~~~~~~~~~ 448 (764)
+-++..|.+.+. ..++..+ +..... +..|+ ...+..+-.++.. +.+.++
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 356677777665 3333333 222222 12122 2222222222221 222221
Q ss_pred chhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChHH
Q 004269 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESHR 527 (764)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 527 (764)
. ..+..... ..|+......+...+...|++++|...|++... +|+...+..+...+.+.|+.++
T Consensus 496 i------------~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 496 L------------YAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred H------------HHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHH
Confidence 1 11111221 124544433455556789999999999987533 3445566677788889999999
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004269 528 AMEIFKQMKTCGIPPNA-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 528 A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (764)
|...|++..+.+ |+. ..+..+...+...|++++|...+++..+. .|+...|..+..++.+.|+.++|+..+++..
T Consensus 561 A~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 561 RDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998864 433 33333334445569999999999999885 4678889999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 607 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
... +.+...+..+...+...|+.++|+..+++..+ ..|+ ...+..+-.++...|++++|+..+++...
T Consensus 637 ~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 637 ELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 653 34667888888899999999999999999986 4565 45666677799999999999999987653
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.7e-17 Score=186.58 Aligned_cols=553 Identities=9% Similarity=-0.037 Sum_probs=367.9
Q ss_pred HHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004269 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
-+...|++++|+..|++..+.. |-+...+..+.++|...|+.++|+..+++..+.+ +-|...+..+ ..+ +++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~k 126 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVK 126 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChh
Confidence 3445699999999999999887 4457788999999999999999999999999884 3344444443 333 99999
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHH--------HhccCCHHHHHHHHHHHhhcCCCCChhhHHHH-HHHHHhhcChhH
Q 004269 141 ASNLIYFLGERYGIYPILPVYNSFLGA--------CAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL-LKLAVWQKNLSA 211 (764)
Q Consensus 141 A~~~~~~m~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~ 211 (764)
|..+++++...++ -+...+..+... |.+. +.|.+.++ .+...+.|+..+.... .+.|...++++.
T Consensus 127 A~~~ye~l~~~~P--~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 127 SVTTVEELLAQQK--ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHHHHHHHhCC--CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 9999999987643 233444444444 5555 56666665 4444445555555555 889999999999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|.+++..+.+..+.+......|..+|.. .++ +.+..+++.. ++.+.
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~---------------------------- 247 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDP---------------------------- 247 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCH----------------------------
Confidence 9999999999888888888888888888 466 7777775531 22222
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCcccHHHH------------------------------HHHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PSSHTYDGF------------------------------IRAIV 339 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l------------------------------l~~~~ 339 (764)
..+..+...|.+.|+.++|..+++++...-.. |+..++--+ +..+.
T Consensus 248 ---~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 248 ---QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLL 324 (987)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 48889999999999999999999998654222 333333222 22222
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhC-C-CCccHHHHHHHHHhcCCHHHHH
Q 004269 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS--KALELDLAEALLDQISRC-T-NPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~ 415 (764)
+.++++.+.++ + ...|.... ..+..+. ..+...++...+..+... + +...-..+..-..+.|+.++|.
T Consensus 325 ~~~~~~~~~~~----~--~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 325 KEGQYDAAQKL----L--ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred hccHHHHHHHH----h--cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 33333333222 1 12222222 1222211 224444555555555444 2 3333334444567889999999
Q ss_pred HHHHHHhc---cCCCCHHHHHHHHHHhcCCCCchhhchhhhh---hhhHHH---H------HHHHHHH-HHCCC-Cc--c
Q 004269 416 KIFAKMRQ---KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ---VDSAKR---I------NAIEMDM-ARNNI-QH--S 476 (764)
Q Consensus 416 ~l~~~m~~---~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~~~~---~------~~~~~~~-~~~~~-~~--~ 476 (764)
++|+.... .-.++.....-++..+...+.+....+...- ++.... . ....... ...+. ++ +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 99998876 2333444444666666666553222222111 110000 0 0011111 11122 23 5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHh-cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004269 477 HISMKNLLKALGAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555 (764)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 555 (764)
...+..+...+.. ++.++|...+.+ ....|+......+...+...|++++|...|+++... .|+...+..+..++.
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all 553 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH
Confidence 6677777777776 788889986654 334566444334445556899999999999998664 455556666777888
Q ss_pred hhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004269 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
..|+.++|...++...+.. +.+...+..+...+.+.|++++|...+++..+. .|+...|..+...+.+.|+.++|+.
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998864 223333334444555669999999999999854 5788899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHH
Q 004269 636 IIEQMHQNKVQPDPSTCH-FVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 636 ~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.+++..+ ..|+...+. .+-.++...|++++|++.++....
T Consensus 631 ~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 631 DLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999996 567665544 444589999999999999986644
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-17 Score=165.01 Aligned_cols=377 Identities=14% Similarity=0.110 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHH-HH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE-LL 200 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll 200 (764)
..+|..+.+.+-..|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+..+. .|+.....+ +-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 3455555555555556666665555554332 112335555555555555555555555555542 343332222 12
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
......|.+++|...|-+.++..+.-..+|+.|...+-..|+...|+..|++..+ ++|+-
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f------------------ 251 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNF------------------ 251 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcc------------------
Confidence 2222345555555555544444444444455555555555555555555555544 33332
Q ss_pred ccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
...|-.|-..|...+.+++|+..|.+.... .|+ ...+..+...|...|.++.|...|++.++...
T Consensus 252 ------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 252 ------------LDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP 317 (966)
T ss_pred ------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC
Confidence 124444555555555555555555444432 233 22333333344444555555555555444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~ 439 (764)
. -...|+.|..++-..|++.+|...|.+... .-|+.
T Consensus 318 ~---------------------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-l~p~h---------- 353 (966)
T KOG4626|consen 318 N---------------------------------FPDAYNNLANALKDKGSVTEAVDCYNKALR-LCPNH---------- 353 (966)
T ss_pred C---------------------------------chHHHhHHHHHHHhccchHHHHHHHHHHHH-hCCcc----------
Confidence 2 233455555555555555555555554443 11110
Q ss_pred cCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CCCCC-hhhHHHHHH
Q 004269 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPLG-TPTYNTVLH 517 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~ 517 (764)
.-..+.|...|...|.+++|..+|... ...|. ...+|.|..
T Consensus 354 -------------------------------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 354 -------------------------------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred -------------------------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 111223344444455555555554432 12232 235677777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 004269 518 SLVEAQESHRAMEIFKQMKTCGIPPNA-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDF 595 (764)
Q Consensus 518 ~~~~~~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~ 595 (764)
.|-++|+.++|+..|++..+ ++|+- ..|+.+-..|-..|+++.|.+.+.+.+.. .|. ...++.|...|-.+|++
T Consensus 397 i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCc
Confidence 78888888888888888776 56664 46777777788888888888888887774 344 34567788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 004269 596 DEALNLLDLVSLEGIPHDV-LLYNTILKK 623 (764)
Q Consensus 596 ~~A~~~~~~m~~~~~~p~~-~~~~~li~~ 623 (764)
.+|+.-++..+ .++||. ..|..++..
T Consensus 473 ~~AI~sY~~aL--klkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 473 PEAIQSYRTAL--KLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHHH--ccCCCCchhhhHHHHH
Confidence 88888888877 456653 345444444
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3e-16 Score=164.63 Aligned_cols=559 Identities=8% Similarity=0.003 Sum_probs=253.2
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc---CCHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG---GYLEEA 141 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A 141 (764)
.+++..|+.+|......+....+.....+..++.+.++.+.|+..|++..+.+ +-++.++-.|...-... ..+..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHH
Confidence 45666666666664443322222222223334445566666666666666653 12222222222211122 233444
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC--CChhhHHHHHHHHHhhcChhHHHHHHHHH
Q 004269 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
..++...-..++ -|+...+.|.+-|.-.|+++.+..+...+...... .-...|-.+.++|-..|++++|...|-+.
T Consensus 256 ~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 256 VQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444433222 23345566666666666666666666555543211 12234555666666666666666666655
Q ss_pred HhcCCCC-HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHH
Q 004269 220 IKHYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 220 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.+..+.+ ...+--|..+|.+.|+.+.+...|+.+.+ ..|+.+ .+.-.
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~------------------------------etm~i 381 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNY------------------------------ETMKI 381 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchH------------------------------HHHHH
Confidence 5543333 34444555666666666666666666665 334431 23333
Q ss_pred HHHHHHccC----CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHHHHHHH
Q 004269 299 VIHACGRTQ----NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM----QQNNLKPQDSTIATLS 370 (764)
Q Consensus 299 li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li 370 (764)
|...|+..+ ..+.|..++.+..+.- ..|...|-.+-..+. .++....+.+|..+ ...+-.+.....|.+.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 333333332 3344555555444432 223334433333332 22333334433322 2233334445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC------CCc------cHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004269 371 VECSKALELDLAEALLDQISRCT------NPK------PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL 438 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~------~~~------~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~ 438 (764)
..+...|+++.|...|+.....- +.. +--.+...+-..++.+.|.+.|..+.. --|.-+.-..-+.+
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk-ehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK-EHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCchhHHHHHHhhH
Confidence 55555555555555555544330 110 011122233334455555555555544 11222211111111
Q ss_pred hcCC-CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHh----cCCCCChhhHH
Q 004269 439 FGNV-NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYN 513 (764)
Q Consensus 439 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~ 513 (764)
.++. +...++.. .+.... .....++.+++-+-..+.+...+..|.+-|.. ....+|+.+.-
T Consensus 539 ma~~k~~~~ea~~-------------~lk~~l-~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 539 MARDKNNLYEASL-------------LLKDAL-NIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred HHHhccCcHHHHH-------------HHHHHH-hcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 1100 00000000 000000 01111222222233344444444444442222 22223333333
Q ss_pred HHHHHHHH------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHH
Q 004269 514 TVLHSLVE------------AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581 (764)
Q Consensus 514 ~li~~~~~------------~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 581 (764)
+|.+.|.+ .+..++|+++|.+..+.. +-|...-+.+--.++..|++..|..+|....+... -...+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCce
Confidence 33332221 223456666666666543 22445555555556666666666666666665532 12334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH--
Q 004269 582 YTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVF-- 656 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll-- 656 (764)
|-.+..+|..+|++-.|+++|+..... .-+.++.+...|.+++.+.|.+.+|.+.+..... ..|. ...|+..+
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVL 760 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHH
Confidence 555666666666666666666665543 2233555666666666666666666666655553 2332 22233221
Q ss_pred ----------------HHHHhcCChHHHHHHHHHHHHhh
Q 004269 657 ----------------SGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 657 ----------------~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
......+..+.|.++|..|...+
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 12333456778888888887544
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=4.3e-18 Score=168.96 Aligned_cols=321 Identities=12% Similarity=0.068 Sum_probs=257.3
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
..+++.....-....+.. +--.++|..+.+.+...|+...|+.+++.+++.. +.....|..+..++...|+.+.|...
T Consensus 95 ~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 95 GSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred ccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHH
Confidence 334444443333333322 4456789999999999999999999999999985 44677999999999999999999999
Q ss_pred HHHHhhhcCCCCChhhhHHHH-HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 145 IYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
|.+..+ +.|+.....+-+ ..+-..|++++|...|.+..+..+ --...|+.|-..+-.+|+...|.+.|++.++-.
T Consensus 173 ~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld 248 (966)
T KOG4626|consen 173 FFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD 248 (966)
T ss_pred HHHHHh---cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC
Confidence 988764 356666544433 334457999999999988877532 245678889889999999999999999999988
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
+.-..+|-.|..+|...+.++.|...+.+... ..|+. ++.|..+...|
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~------------------------------A~a~gNla~iY 296 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNH------------------------------AVAHGNLACIY 296 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcc------------------------------hhhccceEEEE
Confidence 88889999999999999999999999999887 67765 36788888889
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004269 304 GRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382 (764)
Q Consensus 304 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (764)
-..|++|.|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.|......... .....+.|...|...|.++.|
T Consensus 297 yeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred eccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHH
Confidence 9999999999999999974 566 468999999999999999999999999987654 456677888888888888888
Q ss_pred HHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004269 383 EALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP 427 (764)
Q Consensus 383 ~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p 427 (764)
..+|.....-. -...+|.|...|-++|++++|+..|++..+ ++|
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-I~P 419 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-IKP 419 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-cCc
Confidence 88887776542 344577788888888888888888877665 444
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.7e-18 Score=180.76 Aligned_cols=304 Identities=13% Similarity=0.038 Sum_probs=176.0
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC--ChhhhHHHHHHHhccCCHHH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP--ILPVYNSFLGACAKLHSMVH 176 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 176 (764)
..|+++.|.+.|.++.+.+ +.+..++..+...+...|++++|..+++.+.......+ +...+..+...|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344555555555555442 22333444555555555555555555554433111000 01234444555555555555
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC-----HhhHHHHHHHhhccCCHHHHHHHHH
Q 004269 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS-----IFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
|+.+|+.+.+.. .++..++..+...+...|++++|.+.++.+.+..+.+ ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554431 1234445555555555555555555555554432111 1134455556667777777777777
Q ss_pred HHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004269 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 331 (764)
++.+. .|+. ...+..+...+.+.|++++|.++|+++.+.+......++
T Consensus 205 ~al~~--~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 205 KALAA--DPQC------------------------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred HHHhH--CcCC------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 77662 2332 135666777777777777777777777764322223456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccHHHHHHHHHh---
Q 004269 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TNPKPFSAFLAACDT--- 407 (764)
Q Consensus 332 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~--- 407 (764)
..+..++...|++++|...++.+.+.. |+...+..++..+.+.|++++|..+++++... ++...++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 677777777778888877777777653 44455577777777888888888887766554 255567777777664
Q ss_pred cCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCC
Q 004269 408 MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 408 ~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~ 444 (764)
.|+.++++.++++|.+ +++|++. ..|.++|.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~ 362 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGF 362 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC------EECCCCCC
Confidence 5688999999999998 7776665 33655554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.2e-17 Score=175.76 Aligned_cols=296 Identities=10% Similarity=0.014 Sum_probs=247.8
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccc---cHHHHHHHHHHHHcc
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGL---NNKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~ 135 (764)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..+ ....+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334678899999999999999876 4456678889999999999999999999998864222 135678899999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhhcChhH
Q 004269 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~ 211 (764)
|++++|..+|+++.+. -+++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++
T Consensus 121 g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999753 2456778999999999999999999999999887544432 234566677889999999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|...++++.+..+.+...+..+...+.+.|++++|.++|+++.+. .|+..
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~---------------------------- 248 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL---------------------------- 248 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH----------------------------
Confidence 999999999877777888999999999999999999999999873 33220
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
..+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++.
T Consensus 249 -~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 249 -SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 147889999999999999999999999886 577777788899999999999999999999876 578888888888
Q ss_pred HHHh---cCCHHHHHHHHHHHhhC
Q 004269 372 ECSK---ALELDLAEALLDQISRC 392 (764)
Q Consensus 372 ~~~~---~g~~~~a~~~~~~~~~~ 392 (764)
.+.. .|+.+++..+|+.+...
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH
Confidence 7775 56899999999988753
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=9.5e-14 Score=146.16 Aligned_cols=550 Identities=11% Similarity=0.037 Sum_probs=377.8
Q ss_pred HHhhCC--cchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHcc
Q 004269 62 ALCRGE--RSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 62 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~ 135 (764)
|...+. .+.|...|....... |+ .....+.++|. ..+++..|+.+|...+... ..||+.+ .+...+.+.
T Consensus 138 ~l~~~~~~~~~A~a~F~~Vl~~s--p~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl 212 (1018)
T KOG2002|consen 138 LLLEGDKSMDDADAQFHFVLKQS--PD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKL 212 (1018)
T ss_pred hhhcCCccHHHHHHHHHHHHhhC--Cc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhc
Confidence 444444 489999999888765 22 23445666666 4589999999999977643 4566654 333456799
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhcc---CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 136 GYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKL---HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|+.+.|+..|++..+-+ |+ +.++-.|.-.-... ..+..++.++...-... .-+++..+.|-..|.-.|+++.
T Consensus 213 ~~~~~a~~a~~ralqLd---p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLD---PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred cchhhHHHHHHHHHhcC---hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHH
Confidence 99999999999997643 32 22222222222222 44556666665554432 2367788888899999999999
Q ss_pred HHHHHHHHHhcCCC---CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcccc
Q 004269 212 VHEIWEDYIKHYSL---SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 212 a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
+..+...+.+.-.. -...|..+.++|...|++++|...|.+..+ ..++.++
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~------------------------ 342 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFV------------------------ 342 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCcc------------------------
Confidence 99999999875322 334688999999999999999999998877 4444321
Q ss_pred chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCH
Q 004269 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDR----GLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~ 363 (764)
..+--+...+.+.|+++.+...|+...+. .||. .|...|-..|...+ ..+.|..++....+.-+. |.
T Consensus 343 -----l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~ 414 (1018)
T KOG2002|consen 343 -----LPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DS 414 (1018)
T ss_pred -----ccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cH
Confidence 24456788899999999999999999885 4554 46666656666554 457777777777766533 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh----hCC---CCccHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCCHH--
Q 004269 364 STIATLSVECSKALELDLAEALLDQIS----RCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK----LRPDIR-- 430 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~---~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~----~~p~~~-- 430 (764)
..|-.+...|....- ..++.+|.... ..+ .+...|.+..-+...|.+++|...|...... ..+|..
T Consensus 415 ~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 677777666655443 33355554433 222 6667888999999999999999999987652 334442
Q ss_pred ---HHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc-------CcHHHHHHHH
Q 004269 431 ---TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE-------GMIRELIQYF 500 (764)
Q Consensus 431 ---t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~ 500 (764)
|...-+..|. +.+.....+...+..+.+.. ...|++|.+. +...+|...+
T Consensus 494 ~~lt~~YNlarl~------------E~l~~~~~A~e~Yk~Ilkeh--------p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 494 TNLTLKYNLARLL------------EELHDTEVAEEMYKSILKEH--------PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred chhHHHHHHHHHH------------HhhhhhhHHHHHHHHHHHHC--------chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 2222222221 11222222233333333321 1244555444 5667888888
Q ss_pred Hhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhh------------CChhHHHH
Q 004269 501 CDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSII------------RCFKSASA 565 (764)
Q Consensus 501 ~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~------------g~~~~a~~ 565 (764)
... ....+...++-+...+.+...+..|.+-|....+.- ..+|..+...|-+.|... +..++|++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 765 234455677777778888888888888777665432 236777766666655432 34678999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004269 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 566 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
+|....+.. +.|...-|-+.-.++..|++.+|.++|.+..+... .+..+|-.+...|...|++-.|+++|+.....-.
T Consensus 634 ~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999888864 34677778888899999999999999999987642 3556899999999999999999999999876533
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 646 -QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 646 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.-+..+...|-.++.++|.+.+|.+.+..-..
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34566777888899999999999998765443
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.2e-14 Score=161.20 Aligned_cols=86 Identities=16% Similarity=-0.088 Sum_probs=40.2
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004269 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
...+.+.|+++.|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..+|...|+
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCC
Confidence 33444445555555555554443 2344444445555555555555555555443321 1223344444555555555
Q ss_pred HHHHHHHHHH
Q 004269 174 MVHANLCLDL 183 (764)
Q Consensus 174 ~~~A~~~~~~ 183 (764)
+++|+.-|..
T Consensus 210 ~~eA~~~~~~ 219 (615)
T TIGR00990 210 YADALLDLTA 219 (615)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=3.3e-15 Score=168.64 Aligned_cols=425 Identities=9% Similarity=-0.024 Sum_probs=250.8
Q ss_pred CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004269 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 163 (764)
+.++....-.+......|+.+.|+++|....... +.+...+..+...+.+.|++++|..+|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 3444444445555556666666666666665522 3344456666666666666666666666654432 223344555
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+...+...|++++|+..++...+..+. +.. +..+..++...|+.++|...++++.+..|.+...+..+..++...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 666666666666666666666654221 233 555555666666666666666666666666666666666666677777
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH-----HccCCH---HHHHHH
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC-----GRTQNS---GLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~~~~---~~a~~~ 315 (764)
+.|++.++.+.. .|+... .........+++.. ...+++ ++|++.
T Consensus 167 e~Al~~l~~~~~---~p~~~~-------------------------~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 167 APALGAIDDANL---TPAEKR-------------------------DLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHHhCCC---CHHHHH-------------------------HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 777776665442 111000 00000111222222 222334 778889
Q ss_pred HHHHHHC-CCCCCccc-HH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 316 MLQMQSL-GLQPSSHT-YD----GFIRAIVSDRGLRNGMEVLKIMQQNNLK-PQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 316 ~~~m~~~-g~~p~~~~-~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (764)
++.+.+. ...|+... +. ..+.++...|++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9998864 22333321 11 1134556779999999999999987643 332 223357789999999999999999
Q ss_pred HhhCC--C----CccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHH
Q 004269 389 ISRCT--N----PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462 (764)
Q Consensus 389 ~~~~~--~----~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (764)
+.... + ...+..+..++...|++++|..+++.+....++....+..
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~---------------------------- 349 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS---------------------------- 349 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC----------------------------
Confidence 87653 1 1235556678899999999999999888722221111100
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004269 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
....|+ ...+..+...+...|+.++|+++++++....
T Consensus 350 ----------------------------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 350 ----------------------------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred ----------------------------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 001122 1233445556666777777777777776652
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
+-+...+..+...+...|++++|++.+++..+.. |+ ...+..+...+.+.|++++|+.+++++++. .|+..
T Consensus 390 -P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 390 -PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 3344555666666667777777777777776643 43 445555556667777777777777777653 45443
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.3e-14 Score=160.94 Aligned_cols=423 Identities=12% Similarity=-0.036 Sum_probs=251.4
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+......+.+.|++++|+..|+.... +.|+...|..+..+|...|++++|.+.++..++..+.+..++..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 44455666777777777777777665 3456666777777777777777777777777776666677777777777888
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
|++++|...|..+... .+... .....++..+.. ..+........
T Consensus 208 g~~~eA~~~~~~~~~~--~~~~~------------------------------~~~~~~~~~~l~----~~a~~~~~~~l 251 (615)
T TIGR00990 208 GKYADALLDLTASCII--DGFRN------------------------------EQSAQAVERLLK----KFAESKAKEIL 251 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCcc------------------------------HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 8888877777655442 11110 011111111111 11222222222
Q ss_pred HCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC---
Q 004269 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD-STIATLSVE---CSKALELDLAEALLDQISRCT--- 393 (764)
Q Consensus 321 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~--- 393 (764)
+.. .++...+..+ ..+...........-+....+. .+.. ..+..+... ....+++++|...|+.....+
T Consensus 252 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 252 ETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred hcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 221 1122222222 2222111111111111111111 0100 001111000 122356777777777766532
Q ss_pred --CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHC
Q 004269 394 --NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471 (764)
Q Consensus 394 --~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (764)
....|+.+...+...|++++|+..|++..+ ..|+.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-l~P~~------------------------------------------ 364 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIE-LDPRV------------------------------------------ 364 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCc------------------------------------------
Confidence 334566666777778888888888877665 22321
Q ss_pred CCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-C-CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004269 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDS-K-TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549 (764)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 549 (764)
...|..+...+...|++++|...|++. . .+.+...|..+...+...|++++|+..|++..+.. +.+...+..
T Consensus 365 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 365 -----TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 112233445566667777777777653 1 23345678888888888899999999999888763 234566667
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHH
Q 004269 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV-----L-LYNTILKK 623 (764)
Q Consensus 550 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~~~~li~~ 623 (764)
+...+.+.|++++|...|+...+.. +.+...|+.+...+...|++++|.+.|++.....-..+. . .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 7778888899999999998888752 335678888889999999999999999998754211111 1 12222223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 624 ACEKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+...|++++|.+++++.... .|+. ..+..+...+...|++++|++.+++...
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34468999999999998763 4544 4566777799999999999999887543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=8.7e-16 Score=169.39 Aligned_cols=326 Identities=12% Similarity=-0.010 Sum_probs=252.0
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
..+..+.+.|++++|..+++...... +-+...+..++.++...|+++.|.+.++++.+.. +.+...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34777888999999999999988776 3344455555566677899999999999998875 456678888888999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+.+. ..+..+ ..+...|++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999887542 33456788888899999999999999988876543322 233233 3477889999999999
Q ss_pred HHHHhcCC-CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 217 EDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 217 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
+.+.+..+ ++...+..+..++...|++++|...|+.+.+ ..|+. ...
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~------------------------------~~~ 248 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDG------------------------------AAL 248 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC------------------------------HHH
Confidence 98877643 3344455566788899999999999999887 44554 147
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 296 FSDVIHACGRTQNSGL----AEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 296 ~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 370 (764)
+..+...+...|++++ |...|++..+. .|+ ...+..+...+...|++++|...++...+.... +......+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 7888999999999885 78999998875 344 457778888888999999999999999887544 455677788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC-C-CccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 371 VECSKALELDLAEALLDQISRCT-N-PKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
..|.+.|++++|...|+.+.... + ...+..+..++...|++++|...|++..+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999887653 2 22233456678899999999999998876
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.4e-14 Score=133.70 Aligned_cols=449 Identities=12% Similarity=0.107 Sum_probs=297.4
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC--hhHHH-HHHHHHHhcCCCCHhhHHHHHH
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN--LSAVH-EIWEDYIKHYSLSIFSLRKFVW 235 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~-~~~~~~~~~~~~~~~~~~~li~ 235 (764)
.+=|.|+..- ..|.+..+.-+|+.|++.|+..+...-..|+...+-.++ +.-|+ +.|-.|.+....+..+|
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW----- 190 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW----- 190 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-----
Confidence 3556666543 478888999999999999888887777777665433322 22111 12222222122222222
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
+.|++.+ -+|+..++ .+ .+|..+|.++++--+.+.|.++
T Consensus 191 ---K~G~vAd--L~~E~~PK----T~--------------------------------et~s~mI~Gl~K~~~~ERA~~L 229 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETLPK----TD--------------------------------ETVSIMIAGLCKFSSLERAREL 229 (625)
T ss_pred ---ccccHHH--HHHhhcCC----Cc--------------------------------hhHHHHHHHHHHHHhHHHHHHH
Confidence 4455433 33333221 11 4999999999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004269 316 MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP 395 (764)
Q Consensus 316 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 395 (764)
|++-.....+.+..+||.+|.+-.- ....++..+|....+.||..|+|+++.+..+.|+++.|..
T Consensus 230 ~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~----------- 294 (625)
T KOG4422|consen 230 YKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK----------- 294 (625)
T ss_pred HHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH-----------
Confidence 9999988888899999999987643 3348899999999999999999999998888888887754
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004269 396 KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 396 ~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
.|++++.+|++ |+.|...+|..+|..+.+-+++.+ .....+.+|.+.+....++
T Consensus 295 -----------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k--------~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 295 -----------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK--------VASSWINDIQNSLTGKTFK 349 (625)
T ss_pred -----------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh--------hhHHHHHHHHHhhccCccc
Confidence 35677888999 999999999999998888777533 1234556667777666665
Q ss_pred c----cHHHHHHHHHHHHhcCcHHHHHHHHHhc-------CCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004269 475 H----SHISMKNLLKALGAEGMIRELIQYFCDS-------KTPLGT---PTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 475 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
| +...+.+-++.|.+..+.+-|.++..-. ...|+. +-|..+....++....+..+..|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 4 3455666777788888888887774322 112232 2456677778888889999999999998888
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HH
Q 004269 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL---LY 617 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~ 617 (764)
-|+..+...++++....+.++-.-++|..+...|...+...-. +++..|......|+.. -+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHHHHH
Confidence 8999999999999999999999999999998876443322222 2223333222233322 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccc-cCchHhhhHHHHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED 696 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 696 (764)
..+..-|+. .-.+..+..-.+|....+.| ...+...-.+.+.|..++|.+++..+..++-+.. ......+...+..
T Consensus 494 ~~~~ak~aa-d~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCAA-DIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHHH-HHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 333333321 12233334445566544443 3445556667888888888888888865543322 2445444555555
Q ss_pred hhhhccHHHHHHHHHHh
Q 004269 697 LILAEDSEAESRILQFC 713 (764)
Q Consensus 697 ~~~~~~~~~~~~~~~~~ 713 (764)
.....++-.+...++..
T Consensus 571 a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 55555555555555444
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.4e-14 Score=134.77 Aligned_cols=436 Identities=13% Similarity=0.149 Sum_probs=236.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHH-HHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFV-METWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 135 (764)
+.....+|...++.-+|+.|.+.|++.+...-..|++.-+ .+.++.-+ .+-|-.|...| ..+..+| +.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~ 192 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KS 192 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------cc
Confidence 3345567888888888888888887777776666655332 33333322 23333344443 2233333 34
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHH
Q 004269 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
|++.+ -+|+..+ -+..+|.+||.++|+--..+.|.++|++......+.+..+||.+|.+-.-..+
T Consensus 193 G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~------- 257 (625)
T KOG4422|consen 193 GAVAD--LLFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG------- 257 (625)
T ss_pred ccHHH--HHHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-------
Confidence 54443 3444333 24558888888888888888888888888877777788888888765432211
Q ss_pred HHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
.+++.+|....+.||. .|
T Consensus 258 -------------------------------K~Lv~EMisqkm~Pnl-------------------------------~T 275 (625)
T KOG4422|consen 258 -------------------------------KKLVAEMISQKMTPNL-------------------------------FT 275 (625)
T ss_pred -------------------------------HHHHHHHHHhhcCCch-------------------------------Hh
Confidence 4445555555555554 45
Q ss_pred HHHHHHHHHccCCHH----HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHH----CCCCC----C
Q 004269 296 FSDVIHACGRTQNSG----LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQ----NNLKP----Q 362 (764)
Q Consensus 296 ~~~li~~~~~~~~~~----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~ 362 (764)
||+++++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 555555555555443 344555666666666666666666666666555533 2222222221 11211 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----------CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHH
Q 004269 363 DSTIATLSVECSKALELDLAEALLDQISRCT----------NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRT 431 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t 431 (764)
...+...+..|.+..+.+.|.++..-+.... ..+-|..+....++....+..+..|+.|.- -+-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 2334455555666666666666555444331 122345566667777777888888888877 66677777
Q ss_pred HHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhh
Q 004269 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511 (764)
Q Consensus 432 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 511 (764)
...+++|....+.+ +-+..+..+++..|..
T Consensus 436 m~~~lrA~~v~~~~-------------e~ipRiw~D~~~~ght------------------------------------- 465 (625)
T KOG4422|consen 436 MIHLLRALDVANRL-------------EVIPRIWKDSKEYGHT------------------------------------- 465 (625)
T ss_pred HHHHHHHHhhcCcc-------------hhHHHHHHHHHHhhhh-------------------------------------
Confidence 77777765544433 1111222222222211
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhhCChhHHHH-HHHHHHHCCCCCCHHHHHHHHH
Q 004269 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA---TYNIMIDCCSIIRCFKSASA-LVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~-~~~~~~~~g~~p~~~~~~~li~ 587 (764)
-+..--++++..|......|+.. -+.....-|+ -++.++.+ --.++.+. .......+.+.-
T Consensus 466 -----------~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~ 530 (625)
T KOG4422|consen 466 -----------FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAI 530 (625)
T ss_pred -----------hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHH
Confidence 11112223333333333333322 1222221111 11222211 12333333 344455666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGI----PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
.+.+.|+.++|.+++..+..++- .|......-+++...+.++...|...++-|...++
T Consensus 531 Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 531 LLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 77788888888888877754321 22333333555666667777777777777765544
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=1.4e-14 Score=159.80 Aligned_cols=355 Identities=8% Similarity=-0.080 Sum_probs=191.5
Q ss_pred ccCCHHHHHHHHHHHhhhcCCC-CChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIY-PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
++.+|+.-.-+|....++..-. -+..-...++..+.+.|+++.|+.+++......+.+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 4455555544554443321100 111223344555666677777777766666654332 23333344445556666666
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
.+.++.+.+..|.+...+..+...+...|+++.|...++++.+ +.|+.
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~--l~P~~------------------------------ 143 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL--AFSGN------------------------------ 143 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCc------------------------------
Confidence 6666666666666666666666666777777777777776665 34443
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 372 (764)
...|..+...+...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 1356666666777777777777666665432 22222222223355666777777766666655433333334444455
Q ss_pred HHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHH----HHHHHHHHhccCCCCHHHHHHHHHHhcCCCCch
Q 004269 373 CSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPER----AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY 446 (764)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~----a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~ 446 (764)
+.+.|+.++|...++...... +...+..+...+...|++++ |...|++..+ ..|+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-l~P~------------------ 282 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-FNSD------------------ 282 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-hCCC------------------
Confidence 566666666666666655442 44445556666666666654 4555555543 1222
Q ss_pred hhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHHcCC
Q 004269 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPL-GTPTYNTVLHSLVEAQE 524 (764)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~ 524 (764)
+...+..+...+.+.|++++|...+++. ...| +...+..+...+.+.|+
T Consensus 283 -----------------------------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 283 -----------------------------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred -----------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 1122333444555555555555555442 1122 23345555666666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhCChhHHHHHHHHHHHC
Q 004269 525 SHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRD 573 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~ 573 (764)
+++|+..|+++... .|+... +..+..++...|+.++|...|+.+.+.
T Consensus 334 ~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 334 YTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666666666654 243322 222344556666666666666666654
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=9.3e-14 Score=156.92 Aligned_cols=189 Identities=10% Similarity=-0.003 Sum_probs=140.4
Q ss_pred HHhcCcHHHHHHHHHhcCCCC-Chh--hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhhCCh
Q 004269 487 LGAEGMIRELIQYFCDSKTPL-GTP--TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP---NAATYNIMIDCCSIIRCF 560 (764)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~ 560 (764)
+...|++++|...|+.+.... +.. .-..+...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 345688899999998864332 111 11224668889999999999999987653111 124456666778899999
Q ss_pred hHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 561 KSASALVSMMVRDGF-----------YPQ---TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 561 ~~a~~~~~~~~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 999999998887531 123 234556778888999999999999999864 24567788999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 627 KGRIDVIEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
.|+.++|++.+++..+ ..|+.. .+......+...|++++|..+++.+..+
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999986 567754 4445555888999999999999987653
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=3e-13 Score=149.42 Aligned_cols=439 Identities=10% Similarity=0.041 Sum_probs=264.9
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCCh--hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPIL--PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
...+.|+++.|+..|++..+.+ |+. ..+ .++..+...|+.++|+..++...... .........+...+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 4667788888888888776543 332 133 67777777788888888887776210 1111222222345666677
Q ss_pred hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcccc
Q 004269 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
+++|.++++.+.+..+.++..+..++..+...++.++|++.++++.+ ..|+.
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~-------------------------- 169 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTV-------------------------- 169 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcch--------------------------
Confidence 77777777777777666666666777777777777777777777665 33332
Q ss_pred chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (764)
..+-.++..+...++..+|++.++++.+. .|+ ...+..++.++.+.|-...|.++...-... +.+ ....
T Consensus 170 -----~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~--~~~~ 239 (822)
T PRK14574 170 -----QNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA--EHYR 239 (822)
T ss_pred -----HHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH--HHHH
Confidence 23333333333344554577777777765 343 344555666666666666666554432110 111 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC---HHHHHHHHHHHhc--cCCCCHHH-HHHHHHHhcC
Q 004269 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQ--KLRPDIRT-YELLFSLFGN 441 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~l~~~m~~--~~~p~~~t-~~~ll~~~~~ 441 (764)
.| +.+.|.+..+.-... . -....+ .+.|+.-++.+.. +-.|.... |...
T Consensus 240 ~l--------~~~~~a~~vr~a~~~--~---------~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~------ 294 (822)
T PRK14574 240 QL--------ERDAAAEQVRMAVLP--T---------RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA------ 294 (822)
T ss_pred HH--------HHHHHHHHHhhcccc--c---------ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH------
Confidence 10 001111111110000 0 000112 2334444444333 22222111 1100
Q ss_pred CCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCC-Chh--hHHHHHHH
Q 004269 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-GTP--TYNTVLHS 518 (764)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~li~~ 518 (764)
..-.+-++.+.++..++++.++.+...+ .+. +--++.++
T Consensus 295 --------------------------------------~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 295 --------------------------------------RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred --------------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 0113345667788888888888875433 222 44567888
Q ss_pred HHHcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC-----------CCC--H-
Q 004269 519 LVEAQESHRAMEIFKQMKTCG-----IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-----------YPQ--T- 579 (764)
Q Consensus 519 ~~~~~~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----------~p~--~- 579 (764)
|...+++++|+.+|++..... ..++......|.-++...+++++|..+++.+.+... .|+ -
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999986643 122334457788889999999999999999887311 122 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS-TCHFVFSG 658 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~ 658 (764)
..+..++..+.-.|++.+|++.++++.... +-|......+.+.+...|+..+|++.++.... +.|+.. +......+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHH
Confidence 223456777888999999999999997543 55888899999999999999999999977764 567644 44455567
Q ss_pred HHhcCChHHHHHHHHHHHHh
Q 004269 659 YVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 659 ~~~~g~~~~a~~~~~~~~~~ 678 (764)
+...|+|.+|..+.+.+..+
T Consensus 494 al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhh
Confidence 88889999999988877553
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=5.3e-13 Score=147.54 Aligned_cols=454 Identities=10% Similarity=0.015 Sum_probs=302.6
Q ss_pred HHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004269 60 VDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
....++|+++.|+..|++..+....-.+..+ .++..+...|+.+.|+.++++.... ...+......+...|...|+++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 3478999999999999999887622112344 8888888889999999999999822 1223334444466888999999
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHH
Q 004269 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 140 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
+|+++|+++.+.++ .+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|.+.++++
T Consensus 120 ~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 120 QALALWQSSLKKDP--TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhhCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999987653 34556678888999999999999999999885 556556644443444456665699999999
Q ss_pred HhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHH
Q 004269 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299 (764)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (764)
.+..|.+...+..++.+..+.|-...|.++...-+. .+.... .+.+.......+
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~------~f~~~~--------------------~~~l~~~~~a~~ 249 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN------LVSAEH--------------------YRQLERDAAAEQ 249 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc------ccCHHH--------------------HHHHHHHHHHHH
Confidence 999999999999999999999999999877665332 110000 000000000111
Q ss_pred HHHH-----HccCC---HHHHHHHHHHHHHC-CCCCCccc-----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 004269 300 IHAC-----GRTQN---SGLAEQLMLQMQSL-GLQPSSHT-----YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 300 i~~~-----~~~~~---~~~a~~~~~~m~~~-g~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 365 (764)
++.- ....+ .+.|+.-++.+... +-.|.... ..--+-++...++..++.+.|+.+...+.+....+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1110 01122 34566666665542 22233222 22345577789999999999999999887666778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~ 437 (764)
-..+.++|...++.++|..++..+.... +......|..+|...+++++|..+++++.+ ..|-.+. .
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~-~~p~~~~---~-- 403 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE-QTPYQVG---V-- 403 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCcEEe---c--
Confidence 8899999999999999999999986532 122246788999999999999999999986 2231000 0
Q ss_pred HhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChh-hHHHHH
Q 004269 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-TYNTVL 516 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li 516 (764)
+.... ..+.||-. .+..++
T Consensus 404 -~~~~~-----------------------------------------------------------~~pn~d~~~~~~l~a 423 (822)
T PRK14574 404 -YGLPG-----------------------------------------------------------KEPNDDWIEGQTLLV 423 (822)
T ss_pred -cCCCC-----------------------------------------------------------CCCCccHHHHHHHHH
Confidence 00000 00122222 333345
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 596 (764)
..++..|+..+|++.++++.... +-|......+...+...|.+.+|++.++...... +-+..+....+..+...|+++
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHH
Confidence 55667777777777777776653 3456666666677777777777777776655542 223445556666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 004269 597 EALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~~~ 615 (764)
+|..+.+.+.+. .|+..
T Consensus 502 ~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 502 QMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHHHHHHhh--CCCch
Confidence 777777776643 44433
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.72 E-value=4.9e-14 Score=146.30 Aligned_cols=529 Identities=12% Similarity=0.051 Sum_probs=264.0
Q ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 107 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..+|..+...|+.|+..+|..+|..||..|+++.|- +|..|.- ...+.+...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC--------
Confidence 345566666666666666666666666666666666 6666642 344555566666666666666655554
Q ss_pred cCCCCChhhHHHHHHHHHhhcChhH---HHHHHHHHHhcC------CCC-------------HhhHHHHHHHhhccCCHH
Q 004269 187 RMVGKNEVTYTELLKLAVWQKNLSA---VHEIWEDYIKHY------SLS-------------IFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~------~~~-------------~~~~~~li~~~~~~g~~~ 244 (764)
.|...||..|+.+|...||+.. .++.++.+...+ .+. ...-.+.+......|.++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 4566666666666666666543 222111111110 000 001112222233334444
Q ss_pred HHHHHHHHHH------------HhhccCcchhcccc--cccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHH
Q 004269 245 SAYETLQHMV------------ALAMMGKLYINRTS--EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 245 ~A~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 310 (764)
.+++++..++ +.+..++.++.+.+ |...++ .. + ..+|.+++.+-..+|+.+
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~------------~--s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP------------T--SETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC------------C--hHHHHHHHHHHHhcCchh
Confidence 4444443222 22233333332222 222222 11 1 269999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 390 (764)
.|..++.+|.+.|...+.+-|..|+-+ .++...+..+++-|...|+.|+..|+...+..+.++|....+....+.-.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h 298 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH 298 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh
Confidence 999999999999999999988888766 88889999999999999999999999988877777665332222111000
Q ss_pred hCCCCccHHHHHHHHHhcCCHHH-----HHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhh---------
Q 004269 391 RCTNPKPFSAFLAACDTMDKPER-----AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV--------- 455 (764)
Q Consensus 391 ~~~~~~~~~~li~~~~~~~~~~~-----a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--------- 455 (764)
.- ....+.++..+.....+.+. ....+.+..- |+......|....... ..|.-.+...+...+
T Consensus 299 g~-tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 299 GF-TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hh-hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCc
Confidence 00 11112222222111111111 1111111111 2222222222111111 111111111111000
Q ss_pred ---h-hHHHHHHHHHHHHH----------CCCCccHHHH--HHHHHHHHhcCcHHHHHHHHHhc---------CC-----
Q 004269 456 ---D-SAKRINAIEMDMAR----------NNIQHSHISM--KNLLKALGAEGMIRELIQYFCDS---------KT----- 505 (764)
Q Consensus 456 ---~-~~~~~~~~~~~~~~----------~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~---------~~----- 505 (764)
+ .+.....++..... .|+..+..++ -.+.....+. +...+.+-+... ..
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhh
Confidence 0 00000011110000 0110000000 0000000000 111111111000 00
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCCHHHHH
Q 004269 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTMTYT 583 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~ 583 (764)
.+-...-+.++..++..-+..+++..-+.....-+ | ..|..||+-++.....+.|..+.++.... .+..|..-+.
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~ 532 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMT 532 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHH
Confidence 00011233445555555555555543333332211 1 56777777777777778888777776643 3445566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSLEG-IPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 661 (764)
.+.+.+.+.+....+..++.++.+.- ..|+ ..++--++.+....|..+...++++-+...|+.-+ .-++....+
T Consensus 533 ~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLr 608 (1088)
T KOG4318|consen 533 SLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLR 608 (1088)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEee
Confidence 77788888888888888887776521 1222 33455566666777777777777777776665542 234445566
Q ss_pred cCChHHHHHHHHHHH
Q 004269 662 CGFHNSAMEALQVLS 676 (764)
Q Consensus 662 ~g~~~~a~~~~~~~~ 676 (764)
.++...|.++.+...
T Consensus 609 kdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 609 KDDQSAAQEAPEPEE 623 (1088)
T ss_pred ccchhhhhhcchHHH
Confidence 777777777766543
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=4.9e-11 Score=125.33 Aligned_cols=590 Identities=10% Similarity=0.024 Sum_probs=357.2
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|+.++|.+++.+.+... +.....|..|...|-+.|+.+.+...+-...... +.|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444444445699999999999999887 6777889999999999999999988876665553 55778999999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHH----HHHHHHhhcC
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE----LLKLAVWQKN 208 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~ 208 (764)
.+.|.+++|.-.|.+..+.. +++...+--=...|-+.|+...|.+.|.++....+..|..-+.. +++.+...++
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999998654 34544445556678889999999999999998754334333333 3455666777
Q ss_pred hhHHHHHHHHHHh--cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 209 LSAVHEIWEDYIK--HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 209 ~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
.+.|.+.++.... +...+...++.++..|.+...++.|......+..+...+++.-. ....-+.....+.-..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~-----~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW-----DTDERRREEPNALCEV 370 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh-----hhhhhccccccccccC
Confidence 7999998888876 35566677888999999999999999988888774444433110 0000000000000000
Q ss_pred cc---chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004269 287 PV---MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP--SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361 (764)
Q Consensus 287 ~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (764)
+. .++ .. --++-++...+..+....+.....+..+.| +...|.-+..++...|.+.+|..+|..+......-
T Consensus 371 ~~~~s~~l--~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 371 GKELSYDL--RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred CCCCCccc--hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 00 011 01 123334444444445555555555555333 44578888999999999999999999999876655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Q 004269 362 QDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439 (764)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~ 439 (764)
+..+|-.+..+|...|..+.|...|..+.... +...--+|-..+.+.|+.++|++.+..|.. ||..+- .+|
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~---~D~~~~----e~~ 520 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN---PDGRNA----EAC 520 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC---CCccch----hhc
Confidence 67788999999999999999999999998762 344444566778999999999999998753 332210 000
Q ss_pred cCCCCchhhchhhhhhhhHHHHHHHHHHHHHC-CC-CccHHHHHHHHHHHHhcCcH----HHHHHHHHhc-CCCCChhhH
Q 004269 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARN-NI-QHSHISMKNLLKALGAEGMI----RELIQYFCDS-KTPLGTPTY 512 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~-~~~~~~~~~ 512 (764)
+. .. ..++..-...+... |- ..-..+-..|++.+.+...+ ..+...-... ........-
T Consensus 521 a~----~~----------e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~ 586 (895)
T KOG2076|consen 521 AW----EP----------ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELL 586 (895)
T ss_pred cc----cH----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhH
Confidence 00 00 00000000000000 00 00011112233322221111 0111100000 011122233
Q ss_pred HHHHHHHHHcCChHHHH------HHHHHHHhCCCCCCH--HHHHHHHHHHHhhCChhHHHHHHHHHHHCCC--CCCH---
Q 004269 513 NTVLHSLVEAQESHRAM------EIFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGF--YPQT--- 579 (764)
Q Consensus 513 ~~li~~~~~~~~~~~A~------~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~p~~--- 579 (764)
-.++.+-.+.++..... ..+..-...|+.-+. ..+.-++.++++.+++++|+.+...+..... .++.
T Consensus 587 ~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k 666 (895)
T KOG2076|consen 587 KQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRK 666 (895)
T ss_pred HHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 33344444443322211 112222223333232 2456677788899999999999988876532 2222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHD---VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 655 (764)
..-...+.+.+..+++..|.+.++.|... ++..+ ...|+...+...+.++-..-.+.+..+. -..|+...+-.+
T Consensus 667 ~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~--~~~~~~~~~l~~ 744 (895)
T KOG2076|consen 667 ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL--VKNKDDTPPLAL 744 (895)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCccCCcceee
Confidence 22345666777889999999999999864 22222 3356666666666665444444444433 233333222233
Q ss_pred HH--HHHhcCChHHHHHHHHHHHH
Q 004269 656 FS--GYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 656 l~--~~~~~g~~~~a~~~~~~~~~ 677 (764)
+. .+...+.+.-|+..+-....
T Consensus 745 i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 745 IYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred eechhHhhccchHHHHHHHHHHHH
Confidence 32 45677888888886665543
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=7.6e-10 Score=111.98 Aligned_cols=559 Identities=13% Similarity=0.050 Sum_probs=354.7
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
+....+.|..+........ |.++..|. .+---..+...-.+++.+.++. ++.++..|...+ .....+.|+-
T Consensus 327 RLhp~d~aK~vvA~Avr~~-P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~dari 397 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRFL-PTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARI 397 (913)
T ss_pred hcCChHHHHHHHHHHHHhC-CCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHH
Confidence 4455566666666555433 22222222 2221222334445666666665 344555554433 3345555777
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh--
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-- 221 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-- 221 (764)
++.+..+- ++.+. -|.-+|++...++.|.++++..++. ++.+...|.+....=-..|+.+...++.++-+.
T Consensus 398 lL~rAvec--cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L 470 (913)
T KOG0495|consen 398 LLERAVEC--CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSEL 470 (913)
T ss_pred HHHHHHHh--ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 77766542 22222 2444556666777777777777764 455666666666656667777777777666553
Q ss_pred ---cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHH
Q 004269 222 ---HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 222 ---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
|...+...|..=...|-..|..-.+..+.......|+...+. ..+|+.
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~-----------------------------~~tw~~ 521 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR-----------------------------KSTWLD 521 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh-----------------------------HhHHhh
Confidence 355566666666666767777777777777777666655442 137777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004269 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377 (764)
Q Consensus 299 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (764)
-...|.+.+.++-|..+|....+- -|. ...|..+...=-..|..++...++++....-.+ ....+-....-+...|
T Consensus 522 da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAG 598 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcC
Confidence 777777777777777777777653 333 334444444444567777777777777766544 4455555666666777
Q ss_pred CHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhh
Q 004269 378 ELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455 (764)
Q Consensus 378 ~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 455 (764)
++..|+.++...-+.. +...|-+-+..-..+..++.|..+|.+.+. ..|+...|.--++.-- .+
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-~sgTeRv~mKs~~~er-------------~l 664 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-ISGTERVWMKSANLER-------------YL 664 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcchhhHHHhHHHH-------------Hh
Confidence 7777777777766543 555677777777777777777777777766 3344444332221111 11
Q ss_pred hhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHHcCChHHHHHHHH
Q 004269 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPL-GTPTYNTVLHSLVEAQESHRAMEIFK 533 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~l~~ 533 (764)
+..+....+.+...+. ++.-...|-.+-..+.+.++++.|...+... ..-| .+..|-.+...--+.|.+-+|..+++
T Consensus 665 d~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 2222222222222221 1222334555666677788888888887653 2334 45578888777778889999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004269 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613 (764)
Q Consensus 534 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 613 (764)
..+-.+ +-|...|...|+.=.+.|+.+.|..++.+..+. ++-+...|.--|....+.++-..+.+.+++ +..|
T Consensus 744 rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~d 816 (913)
T KOG0495|consen 744 RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHD 816 (913)
T ss_pred HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCC
Confidence 988776 347788888999999999999999999777765 455677888888888887776666666654 3568
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhH
Q 004269 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRS 692 (764)
Q Consensus 614 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 692 (764)
+.....+...+....+++.|.+.|++... ..||.. +|..+...+.+.|.-+.-.+++.......- ..+..|..+..
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP-~hG~~W~avSK 893 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP-THGELWQAVSK 893 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CCCcHHHHHhh
Confidence 88888888889999999999999999985 556654 666677788999988888888885543221 12346655544
Q ss_pred HHH
Q 004269 693 DFE 695 (764)
Q Consensus 693 ~~~ 695 (764)
.+.
T Consensus 894 ~i~ 896 (913)
T KOG0495|consen 894 DIK 896 (913)
T ss_pred hHH
Confidence 443
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=6.3e-12 Score=120.95 Aligned_cols=479 Identities=12% Similarity=0.084 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhh-HHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH-
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY-NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL- 200 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll- 200 (764)
.+...|.+.|.......+|+..++-+. ++...|+.-.. -.+-+.+.+..++.+|++.|+.....-+..+..+-..++
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiiv-knkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIV-KNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhh-cccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 344556677777788889999998775 45666665433 235567888899999999998877753333333433333
Q ss_pred ---HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccccc
Q 004269 201 ---KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 201 ---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
-.+.+.|.++.|...|+.+.+.. |+..+-..|+-++..-|+-++..+.|.+|...-..+++. +.
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~-pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~ddd------------ky 347 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEA-PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDD------------KY 347 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhC-ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcc------------cc
Confidence 35778999999999999998754 455554455556667899999999999998743333320 01
Q ss_pred CCCccCCccccchhhhh-hHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCccc-HHHH-------------------
Q 004269 278 DIPIPLNALPVMKVLRW-SFSDVIHACGRTQN--SGLAEQLMLQMQSLGLQPSSHT-YDGF------------------- 334 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~-~~~l------------------- 334 (764)
..+. ..|..+.... .-|-.++-.-+.+. -++++-.--++..--+.||-.. |.-.
T Consensus 348 i~~~---ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 348 IKEK---DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred cCCc---CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 1000 1111111101 11112222222221 1222222222222112232210 0000
Q ss_pred -HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCccHHHHH-----HHHH
Q 004269 335 -IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK--ALELDLAEALLDQISRCTNPKPFSAFL-----AACD 406 (764)
Q Consensus 335 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~li-----~~~~ 406 (764)
..-+.+.|+++.|.++++-+.+..-+.-....+.|-..+.- -.++..|.+.-+..... .-||.-. ..-.
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~---dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI---DRYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc---cccCHHHhhcCCceee
Confidence 01133455555555555555544332222222222222221 22344444444443321 2222211 1112
Q ss_pred hcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004269 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486 (764)
Q Consensus 407 ~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (764)
.+|++++|.+.|++... ..-......|| +--.
T Consensus 502 ~ngd~dka~~~ykeal~-----------------------------------------------ndasc~ealfn-iglt 533 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALN-----------------------------------------------NDASCTEALFN-IGLT 533 (840)
T ss_pred ecCcHHHHHHHHHHHHc-----------------------------------------------CchHHHHHHHH-hccc
Confidence 34556666666655543 11111111111 1123
Q ss_pred HHhcCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHH
Q 004269 487 LGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564 (764)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 564 (764)
+.+.|++++|+..|-+.. ...+....-.+.+.|-...+..+|++++-+.... ++.|....+.|...|-+.|+-.+|.
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhh
Confidence 566788999999886641 1234445555677788888999999998776553 4557788889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC
Q 004269 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~ 643 (764)
+.+-.--+. ++-+..+..-|..-|....-+++|+.+|++.. -++|+..-|..+|..|. +.|++++|..+++....
T Consensus 613 q~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr- 688 (840)
T KOG2003|consen 613 QCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR- 688 (840)
T ss_pred hhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 887544433 56678888888889999999999999999875 57999999999988775 67999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 644 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
.++-|..+...|++.+...|.. ++.++-+++
T Consensus 689 kfpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 689 KFPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred hCccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 5777888888899888887753 344444444
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=3.3e-10 Score=119.22 Aligned_cols=615 Identities=10% Similarity=-0.023 Sum_probs=368.6
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh
Q 004269 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (764)
.+...+..+...|+.++|. .++.++ ....|.. ...|..+...|-..|+.++++..|-..-..+ +-|..
T Consensus 141 ~ll~eAN~lfarg~~eeA~-~i~~Ev---------Ikqdp~~-~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e 208 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAE-EILMEV---------IKQDPRN-PIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYE 208 (895)
T ss_pred HHHHHHHHHHHhCCHHHHH-HHHHHH---------HHhCccc-hhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChH
Confidence 4445555555569999999 555544 3333432 3334455666888999999998887766554 45667
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH----HH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN----SF 164 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----~l 164 (764)
.|..+.....+.|++..|+-+|.+.++.. +++...+-.-...|-+.|+...|..-|.++.+..+ +.|..-.. ..
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHH
Confidence 78888888888899999999999999986 44554444557788999999999999999876543 22333233 34
Q ss_pred HHHHhccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh----------------------
Q 004269 165 LGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---------------------- 221 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------- 221 (764)
+..+...++.+.|.+.++...+. +-..+...++.+...+.+...++.+.........
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 55566777789999999888763 2234555677777778888888888776655544
Q ss_pred ------cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 222 ------HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 222 ------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
...++..+ -.++-++.+....+....+..-..+.+..|...+ ..
T Consensus 367 ~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~-----------------------------dL 416 (895)
T KOG2076|consen 367 LCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDV-----------------------------DL 416 (895)
T ss_pred cccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhH-----------------------------HH
Confidence 01222222 1233334444555555555555565555554421 47
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 296 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (764)
|.-+..+|...|++.+|+.+|..+...-..-+...|-.+.+.+-..|..+.|.+.|......... +...-.+|...+-+
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQ 495 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHh
Confidence 88889999999999999999999998655556667888888888999999999999999886543 44556678888999
Q ss_pred cCCHHHHHHHHHHHhhCC----CCcc-------HHHHHHHHHhcCCHHHHHHHHHHHhc-c-----CCCCHHH-------
Q 004269 376 ALELDLAEALLDQISRCT----NPKP-------FSAFLAACDTMDKPERAIKIFAKMRQ-K-----LRPDIRT------- 431 (764)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~----~~~~-------~~~li~~~~~~~~~~~a~~l~~~m~~-~-----~~p~~~t------- 431 (764)
.|+.++|.+.+..+...+ .... --.....+.+.|+.++-+..-..|.. . +-|+..-
T Consensus 496 ~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~ 575 (895)
T KOG2076|consen 496 LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIA 575 (895)
T ss_pred cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhc
Confidence 999999999999865433 1111 22344567788888876666555543 1 2121111
Q ss_pred ----------HHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccH--HHHHHHHHHHHhcCcHHHHHHH
Q 004269 432 ----------YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH--ISMKNLLKALGAEGMIRELIQY 499 (764)
Q Consensus 432 ----------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~ 499 (764)
...++.+..+.++.....+ .+.. ..........|+..+. ..+..++..+++.+++++|..+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~---~l~d----~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~v 648 (895)
T KOG2076|consen 576 GTTSKRYSELLKQIIRAREKATDDNVMEK---ALSD----GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSV 648 (895)
T ss_pred cccccccchhHHHHHHHHhccCchHHhhh---cccc----hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1111111111111000000 0000 0111112222332222 2345688899999999999998
Q ss_pred HHhcCC-----CCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHhC-CC--CCCH-HHHHHHHHHHHhhCChhHHHHHH
Q 004269 500 FCDSKT-----PLGT---PTYNTVLHSLVEAQESHRAMEIFKQMKTC-GI--PPNA-ATYNIMIDCCSIIRCFKSASALV 567 (764)
Q Consensus 500 ~~~~~~-----~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g~--~p~~-~t~~~ll~~~~~~g~~~~a~~~~ 567 (764)
...+.. .++. ..-...+.+....+++..|...++.|... +. .|.. ..|+..++...+.++----.+++
T Consensus 649 v~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 649 VFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765421 1121 13345667778889999999999998865 11 1222 23444455555444433333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH----------HcCCHHHHHHH
Q 004269 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK-KAC----------EKGRIDVIEFI 636 (764)
Q Consensus 568 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~----------~~g~~~~a~~~ 636 (764)
..+......-++..+......+..++.+..|+..+-+.... .||....+.++. ++. ++-.+-.+..+
T Consensus 729 ~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 729 MRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred HHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222211111222222223345567777777776665533 455333332221 111 11112345555
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 637 IEQMHQNKVQ-PDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 637 ~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+.+..+.... --...++-+-++|-..|-..-|..++++...
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 5555543211 1234555566788888888888888887643
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=2e-11 Score=127.36 Aligned_cols=472 Identities=14% Similarity=0.049 Sum_probs=253.4
Q ss_pred CCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH
Q 004269 45 GLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC 124 (764)
Q Consensus 45 ~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 124 (764)
|+.|. ..++.++|..|+..|+.+.|- +|.-|.-...+.+...|+.++......++.+.+. .|...+
T Consensus 20 gi~Pn--RvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 20 GILPN--RVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred cCCCc--hhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 34444 366777788888888888777 7777777776777777888888777777777664 577788
Q ss_pred HHHHHHHHHccCCHHH---HHHHHHHHhhh---cCCC-CChh-------------hhHHHHHHHhccCCHHHHHHHHHHH
Q 004269 125 YLLMMQALCKGGYLEE---ASNLIYFLGER---YGIY-PILP-------------VYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~---A~~~~~~m~~~---~~~~-~~~~-------------~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
|+.|..+|...||+.- .++.++.+.+. .|+- |... --...+.-..-.|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888888887543 33322222211 1110 0000 0112222233334444445544444
Q ss_pred hhcC-CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhc-CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 185 DSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 185 ~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+... ..|..+ .++-+.. +..-.+++...+... ..+++.+|..++..-...|+.+.|..++..|.+.|+.-..
T Consensus 166 Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3221 111111 1222221 223444555555443 2699999999999999999999999999999998876655
Q ss_pred hhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004269 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342 (764)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 342 (764)
.-|-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+.+.|
T Consensus 240 -------------------------------HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 240 -------------------------------HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred -------------------------------ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 233344433 7888888999999999999999999987777666644
Q ss_pred ChhHHHH-----------HHHHHH-------------------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004269 343 GLRNGME-----------VLKIMQ-------------------------QNNLKPQDSTIATLSVECSKALELDLAEALL 386 (764)
Q Consensus 343 ~~~~a~~-----------~~~~~~-------------------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 386 (764)
....+.. ++..|. =.|+.....++... .-....|.-+..+++-
T Consensus 286 ~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlv 364 (1088)
T KOG4318|consen 286 QTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLV 364 (1088)
T ss_pred hhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHH
Confidence 3211111 011110 01222122222111 1112245555555555
Q ss_pred HHHhhCC------CCccHHHHHHHHHhcCCHHHHHHH------------------HHHHhccCCCCHHHHH-------HH
Q 004269 387 DQISRCT------NPKPFSAFLAACDTMDKPERAIKI------------------FAKMRQKLRPDIRTYE-------LL 435 (764)
Q Consensus 387 ~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~l------------------~~~m~~~~~p~~~t~~-------~l 435 (764)
..+.... ++..|..++.-|.+.-+..-.... ..+......|+..--. -+
T Consensus 365 g~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 365 GQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred hhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHH
Confidence 5544321 333444444444332111100000 0000001222221110 00
Q ss_pred HHHhcCCCC-c----hhhchhhhhhhhH---HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC-
Q 004269 436 FSLFGNVNA-P----YEEGNMFSQVDSA---KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP- 506 (764)
Q Consensus 436 l~~~~~~~~-~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 506 (764)
.+..-.... . +.+...+-.+-.. .++....+.....-+ ...|..|++-++..+..++|..+.++...+
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d 521 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRD 521 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccc
Confidence 000000000 0 0000000000000 111111111111111 145778899999999999999988776322
Q ss_pred ----CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 004269 507 ----LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPN-AATYNIMIDCCSIIRCFKSASALVSMMVRDG 574 (764)
Q Consensus 507 ----~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 574 (764)
.|..-+..+.+.+.+.+...++..++.+|.+.-. .|+ ..++-.+++..+..|+.+...++++-+...|
T Consensus 522 ~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslg 595 (1088)
T KOG4318|consen 522 ESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLG 595 (1088)
T ss_pred hhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 2445678888999999999999999999987421 222 3455566667777788887777777766654
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=1.6e-09 Score=109.71 Aligned_cols=513 Identities=10% Similarity=0.024 Sum_probs=384.9
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
..+...=.+++++..+.- |+.+- |-++.....+.+.|+-++++..+. ++.+...| .+|++..-++.|.++
T Consensus 359 E~~~~~K~RVlRKALe~i--P~sv~---LWKaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkv 428 (913)
T KOG0495|consen 359 ESDTKNKKRVLRKALEHI--PRSVR---LWKAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKV 428 (913)
T ss_pred hhHHHHHHHHHHHHHHhC--CchHH---HHHHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHH
Confidence 344455566777777653 33332 334444556777799999998886 34444444 466777788999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH----HhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL----MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
++...+ .++-+..+|.+-...--.+|+.+...+++++ +...|+..+...|..=...|-..|..-.+..+....+
T Consensus 429 LNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi 506 (913)
T KOG0495|consen 429 LNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI 506 (913)
T ss_pred HHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH
Confidence 999865 5667777887777777788999999988765 4556888888888888888888888888888888777
Q ss_pred h-c--CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHH
Q 004269 221 K-H--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297 (764)
Q Consensus 221 ~-~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (764)
. + ...-..+|+.-...|.+.+.++-|..+|....+ +.|.. ...|.
T Consensus 507 gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k------------------------------~slWl 554 (913)
T KOG0495|consen 507 GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCK------------------------------KSLWL 554 (913)
T ss_pred hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccch------------------------------hHHHH
Confidence 5 3 233456888888999999999999999999988 66654 25888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
..+..--..|..+....+|++.... .|-.. .|-....-.-..|+...|..++....+.+.. +...+-+-+..-...
T Consensus 555 ra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en 631 (913)
T KOG0495|consen 555 RAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcc
Confidence 8887777889999999999999876 34444 3444445666789999999999999988766 778888889999999
Q ss_pred CCHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhh
Q 004269 377 LELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455 (764)
Q Consensus 377 g~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 455 (764)
.+++.|..+|.+..... +...|.--+..---.++.++|++++++..+ .-|+..-+-.++ |++++++
T Consensus 632 ~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk-~fp~f~Kl~lml------------GQi~e~~ 698 (913)
T KOG0495|consen 632 DELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK-SFPDFHKLWLML------------GQIEEQM 698 (913)
T ss_pred ccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH-hCCchHHHHHHH------------hHHHHHH
Confidence 99999999999988765 777887777777778999999999988776 456665554443 2333333
Q ss_pred hhHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHH
Q 004269 456 DSAKRINAIEMDMARNN---IQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAME 530 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~ 530 (764)
...+.... ....| ++.....|-.|...=-+.|.+..|..+|+.. ..+.+...|-..|..-.+.|+.+.|..
T Consensus 699 ~~ie~aR~----aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 699 ENIEMARE----AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHH----HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 33333222 22233 3445677888888888999999999999874 456678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004269 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610 (764)
Q Consensus 531 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 610 (764)
+..+..+. ++-+...|..-|....+.++-..... .+.+ ..-|+...-++...|-...+++.|.+.|.+....+
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D---ALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d- 847 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID---ALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD- 847 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHH---HHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 99887765 34455677777777666666444333 3333 35677777788888888899999999999998543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+.+-.+|.-+...+.++|.-+.-.+++..... ..|...
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG 885 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHG 885 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCC
Confidence 23446888899999999999998999998874 556544
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1e-08 Score=100.03 Aligned_cols=458 Identities=10% Similarity=0.111 Sum_probs=251.3
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHHHHHhccCCHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 178 (764)
.++...|+.+|++.+.-+ ..+...|-..+.+=.++..+..|..++++.... -|.+ ..|-.-+..--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345556666666666554 334445555555555666666666666655421 1222 23333333333456666666
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004269 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 258 (764)
.+|+.-.+ ..|+...|.+.|+.=.+.+.++.|..+++..+- ..|++..|-.....-.++|....|..+|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 66666555 356666666666666666666666666666554 2366666666666666666666666666665541
Q ss_pred cCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHH
Q 004269 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFI 335 (764)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll 335 (764)
-.++... ...|++...--.++..++.|.-+|.-.... -|... .|....
T Consensus 237 ~~~d~~~---------------------------e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 237 LGDDEEA---------------------------EILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYT 287 (677)
T ss_pred hhhHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHH
Confidence 1111000 123333333333444555555555554443 12211 111111
Q ss_pred HHHHhcCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Q 004269 336 RAIVSDRGLRNGMEV--------LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407 (764)
Q Consensus 336 ~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 407 (764)
..=-+-|+.....+. ++.+.+.+.- |-.+|--.+..-..
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~---------------------------------nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY---------------------------------NYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC---------------------------------CchHHHHHHHHHHh
Confidence 111122222211111 1222222211 22333333333333
Q ss_pred cCCHHHHHHHHHHHhccCCCCHH-------HHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHH
Q 004269 408 MDKPERAIKIFAKMRQKLRPDIR-------TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 408 ~~~~~~a~~l~~~m~~~~~p~~~-------t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
.|+.+...++|+....+++|-.. .|..+=-+|-. + -......+..+++....+ -++....++
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye-----E-----le~ed~ertr~vyq~~l~-lIPHkkFtF 403 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE-----E-----LEAEDVERTRQVYQACLD-LIPHKKFTF 403 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH-----H-----HHhhhHHHHHHHHHHHHh-hcCcccchH
Confidence 44444444444444443333210 01111000000 0 001122233333333333 333444555
Q ss_pred HHHHHHH----HhcCcHHHHHHHHHh-cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004269 481 KNLLKAL----GAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555 (764)
Q Consensus 481 ~~l~~~~----~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 555 (764)
..+--+| .++.++..|.+++.. ++..|-..+|-..|..-.+.++++.+..+|++..+-+ +-|..++......=.
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHH
Confidence 5443333 467888999999865 4667888899999999999999999999999999875 336677777777667
Q ss_pred hhCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HcC-
Q 004269 556 IIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-----EKG- 628 (764)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~g- 628 (764)
..|+.+.|..+|...+... +......|-+.|+.=...|.++.|..+++++++. .+...+|-++..--. +.+
T Consensus 483 ~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~ 560 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDE 560 (677)
T ss_pred HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccccccccc
Confidence 7899999999999998752 3344566777777778899999999999999864 455557766654332 333
Q ss_pred ----------CHHHHHHHHHHHHH
Q 004269 629 ----------RIDVIEFIIEQMHQ 642 (764)
Q Consensus 629 ----------~~~~a~~~~~~m~~ 642 (764)
....|..+|++...
T Consensus 561 ~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 561 DLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred chhhhhcchhHHHHHHHHHHHHHH
Confidence 45678888887654
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=3.9e-11 Score=124.88 Aligned_cols=284 Identities=11% Similarity=0.018 Sum_probs=209.5
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH--HHHHHHHccCCH
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL--LMMQALCKGGYL 138 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~ 138 (764)
....|+++.|.+......... ..+.. |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|++
T Consensus 94 a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 334799999998888765543 22233 333345556889999999999999876 45554333 336678889999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHhhcChhH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE-------VTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~ 211 (764)
+.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+.
T Consensus 170 ~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 170 HAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999997543 445668888999999999999999999999987655322 133444444445556677
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
..++|+.+.+..+.++.....+...+...|+.+.|.+++++..+. .++.
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~----------------------------- 296 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE----------------------------- 296 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH-----------------------------
Confidence 777777776667778888889999999999999999999888762 2221
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 370 (764)
--.++.+.+..++.+++++..+...+. .|+.. .+..+-..|.+.+++++|.+.|+.+.+. .|+..++..+.
T Consensus 297 ----~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 297 ----RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred ----HHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 112345555668889999999888876 45544 4667778888999999999999998875 57778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 004269 371 VECSKALELDLAEALLDQIS 390 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~ 390 (764)
..+.+.|+.++|.+.+++-.
T Consensus 369 ~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888877653
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.5e-08 Score=98.96 Aligned_cols=437 Identities=13% Similarity=0.127 Sum_probs=293.7
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
|.--.+.=..++++..|..+|+..+.....+...|...+.+-.++..+..|..+++.... +-|..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRV------------- 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRV------------- 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchH-------------
Confidence 333333344567777888888888877777777888888888888888888888888776 22221
Q ss_pred ccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
-..|--.+..--..|++..|.++|++-.+. .|+..+|.+.|+.=.+-+.++.|..+++...
T Consensus 141 -----------------dqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 141 -----------------DQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred -----------------HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 025555555555668888888888887764 7888888888888888888888888888876
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-C----CccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--
Q 004269 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-N----PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD-- 428 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~-- 428 (764)
- +.|++.++-.....=.++|.+..|..+|....+.- + ...+.++..-=.++..++.|.-+|+-....++.+
T Consensus 202 ~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra 279 (677)
T KOG1915|consen 202 L--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA 279 (677)
T ss_pred e--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 5 34778888777777788888888888887766532 2 2233343333345666777777777665522222
Q ss_pred HHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCC
Q 004269 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTP 506 (764)
Q Consensus 429 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~ 506 (764)
...|.....-=-+.|+...- +..-.+++-.++...+.+++. |--+|--.++.-...|+.+...++++.. ..+
T Consensus 280 eeL~k~~~~fEKqfGd~~gI----Ed~Iv~KRk~qYE~~v~~np~--nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGI----EDAIVGKRKFQYEKEVSKNPY--NYDSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred HHHHHHHHHHHHHhcchhhh----HHHHhhhhhhHHHHHHHhCCC--CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 22232222111111111000 001112222333333444433 4445555666677789999999999875 333
Q ss_pred CCh--hhHHHHHH--------HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hhCChhHHHHHHHHHHH
Q 004269 507 LGT--PTYNTVLH--------SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS----IIRCFKSASALVSMMVR 572 (764)
Q Consensus 507 ~~~--~~~~~li~--------~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~ 572 (764)
|-. ..|.-.|. .-....+.+.+.++|+...+. ++-...||.-+--.|+ +..++..|.+++...+
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI- 431 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI- 431 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-
Confidence 421 12322222 223468899999999999883 4445577776655555 4578899999998776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 004269 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDPST 651 (764)
Q Consensus 573 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~ 651 (764)
|..|...+|...|..=.+.+.+|...+++++.++-+ +-|..+|......=...|+.+.|..+|+-.++.. +......
T Consensus 432 -G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 432 -GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred -ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 456888999999999999999999999999999754 4478899988888888999999999999998632 2223344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 652 CHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 652 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
|...|..=...|.++.|..+++++..+
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 555555556799999999999988664
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=6.4e-10 Score=107.40 Aligned_cols=426 Identities=10% Similarity=0.013 Sum_probs=244.9
Q ss_pred hcChhHHHHHHHHHHhc--CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccC
Q 004269 206 QKNLSAVHEIWEDYIKH--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
.....+|+..|+.+++. ++.....-..+.+.+.+...+.+|+++++..... .|...
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsin-------------------- 271 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSIN-------------------- 271 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccc--------------------
Confidence 34455666666666653 3333333344555666777777777777766542 22110
Q ss_pred CccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 004269 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (764)
++.-.-..+.+--.+.+.|+++.|+..|+...+. .|+..+--.|+-.+...|+-++..+.|..|+.....||.
T Consensus 272 -----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dd 344 (840)
T KOG2003|consen 272 -----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDD 344 (840)
T ss_pred -----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCc
Confidence 0000023444444566777777777777776664 466655444444555567777777777777654332222
Q ss_pred H------------HHHH-----HHHHHHhcC--CHHHHHHHHHHHhhCC---CC---ccHH------------------H
Q 004269 364 S------------TIAT-----LSVECSKAL--ELDLAEALLDQISRCT---NP---KPFS------------------A 400 (764)
Q Consensus 364 ~------------~~~~-----li~~~~~~g--~~~~a~~~~~~~~~~~---~~---~~~~------------------~ 400 (764)
. ..+. .+.-..+.. +.+++.-.--.+.... +- .-|. .
T Consensus 345 dkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 345 DKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 2 2221 111111111 1111111111111100 00 0010 0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHH
Q 004269 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 401 li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
-...|.++|+++.|+++++-..+ -|..|-+.....++.+ .+...++-|... ..+...... --.-+....
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~---kdnk~~saaa~nl~~l-~flqggk~~~~a------qqyad~aln-~dryn~~a~ 493 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEK---KDNKTASAAANNLCAL-RFLQGGKDFADA------QQYADIALN-IDRYNAAAL 493 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHh---ccchhhHHHhhhhHHH-HHHhcccchhHH------HHHHHHHhc-ccccCHHHh
Confidence 12347899999999999988766 1222222111111100 000111111110 000000000 000111111
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004269 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
+.--..-...|+++.|.+.+.+.. ..|.. .||. .-.+-..|+.++|++.|-++..- +..+..+...+.+-|..
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL 570 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 111122335689999999998762 22322 2332 23456779999999999876542 23466677778888888
Q ss_pred hCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004269 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 636 (764)
..+..+|.+++-+.... ++.|+...+.|.+.|-+.|+-..|.+..-.--. -++-+..+..-|..-|....-+++++..
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998777664 566789999999999999999999987654331 2455777888888888888889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHh
Q 004269 637 IEQMHQNKVQPDPSTCHFVFS-GYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 637 ~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~ 678 (764)
|++.. -+.|+..-|..++. ++.+.|.+.+|.++++.+.++
T Consensus 649 ~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 649 FEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99876 48999999999887 556789999999999988653
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=3.4e-13 Score=134.13 Aligned_cols=264 Identities=13% Similarity=0.011 Sum_probs=114.3
Q ss_pred HHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHH
Q 004269 12 LIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFF 91 (764)
Q Consensus 12 ~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (764)
.++..+...|++++|+ .++.+. .....|......|.....-....++++.|+..++++...+ +-++..+.
T Consensus 13 ~~A~~~~~~~~~~~Al-~~L~~~--------~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~ 82 (280)
T PF13429_consen 13 RLARLLYQRGDYEKAL-EVLKKA--------AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc-cccccc--------cccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 5688899999999999 555332 1222122223334333334456889999999999999876 34666788
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004269 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
.++.. ...++++.|.++++...+.. +++..+..++..+...|+++++..+++.+.+....+++...|..+...+.+.
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 88877 68899999999998877653 5667778888999999999999999999865444566778899999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHH
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
|+.++|++.|+...+..+. |......++..+...|+.+++.++++...+..+.|+..+..+..+|...|+.++|..+|+
T Consensus 160 G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999999986332 577788899999999999999999999988778888889999999999999999999999
Q ss_pred HHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
+..+ ..|+++ .....+..++.+.|+.++|.++..+...
T Consensus 239 ~~~~--~~p~d~------------------------------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALK--LNPDDP------------------------------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHH--HSTT-H------------------------------HHHHHHHHHHT-----------------
T ss_pred cccc--cccccc------------------------------cccccccccccccccccccccccccccc
Confidence 9887 555542 4667888999999999999999887653
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=4e-10 Score=118.12 Aligned_cols=291 Identities=12% Similarity=-0.036 Sum_probs=185.3
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
....|+++.|.+.+.+..+.. |++.. +.....+..+.|+++.|.+.+.+..+..-.+.....-.....+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 445889999999888876654 44333 344456667778999999999888765312222233345777788899999
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH---HhhcChhHHHHHHH
Q 004269 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA---VWQKNLSAVHEIWE 217 (764)
Q Consensus 141 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~ 217 (764)
|...++.+.+.. |-+...+..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999887643 3355577888888899999999999999888876543222211111111 22222222222333
Q ss_pred HHHh----cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 218 DYIK----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 218 ~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
.+.+ ..+.++..+..+...+...|+.+.|.+++++..+ ..|+...
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~----------------------------- 298 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRA----------------------------- 298 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCccc-----------------------------
Confidence 3333 2335777888888888888888888888888877 3343310
Q ss_pred hh-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 294 WS-FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369 (764)
Q Consensus 294 ~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 369 (764)
.. ...........++.+.+.+.++...+. .|+.. ...++-..+.+.|++++|.+.|+........|+...+..+
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 01 111222223346677777777776654 44444 3446667777888888888888854444456677777777
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 004269 370 SVECSKALELDLAEALLDQI 389 (764)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~~ 389 (764)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777664
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=1.1e-12 Score=130.30 Aligned_cols=259 Identities=12% Similarity=0.041 Sum_probs=92.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHH-HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH-ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
...+...|++++|++++........+|+...|-. +...+-..++.+.|.+.++++...+. -++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 5556778888888888865444332234434433 44455566888888888888887753 356667777766 68888
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+++|.++++...++. ++...+..++..+.+.++++++..+++...... ..++...|..+...+.+.|+.++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888887665442 455567777788888888888888888876532 2345666667777777778888888888
Q ss_pred HHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhH
Q 004269 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
++.++..|.|....+.++..+...|+.+++..+++...+.. |+++ ..|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~------------------------------~~~ 217 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDP------------------------------DLW 217 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC------------------------------CHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHH------------------------------HHH
Confidence 88777777777777777777777777777777777766633 2110 356
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 297 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
..+..++...|++++|+..|++..... +.|..+...+..++...|+.++|.++.....
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 677777777777777777777776642 2255566666667777777777777666543
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=1.7e-09 Score=112.76 Aligned_cols=285 Identities=11% Similarity=0.011 Sum_probs=167.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004269 306 TQNSGLAEQLMLQMQSLGLQPSSHT-YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (764)
.|+++.|.+.+....+.. +++.. |.....+....|+++.+...+.++.+....+...........+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888766542 12222 333344557899999999999999875433222222244678899999999999
Q ss_pred HHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHH
Q 004269 385 LLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461 (764)
Q Consensus 385 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (764)
.++.+.+.. ++.....+...|.+.|++++|..++..+.+ +..++. ....+-.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------ 229 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 999988764 666788889999999999999999999988 433211 1111000
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 004269 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541 (764)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~ 541 (764)
. .|..++.......+.+...++++.+.+. .+
T Consensus 230 ----------------~--------------------------------a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~ 260 (398)
T PRK10747 230 ----------------Q--------------------------------AWIGLMDQAMADQGSEGLKRWWKNQSRK-TR 260 (398)
T ss_pred ----------------H--------------------------------HHHHHHHHHHHhcCHHHHHHHHHhCCHH-Hh
Confidence 0 0111111111112223333333333221 12
Q ss_pred CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 542 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
.+......+..++...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...+.. +-|+..+..+.
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lg 335 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLG 335 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34445555555556666666666666555552 2333211 2233334466666666666665431 23444555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004269 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 622 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
..|.+.+++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.++++
T Consensus 336 rl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666664 45666666666666666666666666655
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=7.8e-10 Score=102.66 Aligned_cols=275 Identities=10% Similarity=0.032 Sum_probs=183.1
Q ss_pred HHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC-cccc--HHHHHHHHHHHHccCC
Q 004269 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE-IGLN--NKCYLLMMQALCKGGY 137 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~ 137 (764)
.+.-++++++|+++|-+|.+.+ +-+..+-.+|.+.+.+.|..+.|++++..+.++. .+-+ ......|..-|...|-
T Consensus 44 NfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 44 NFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred HHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 4556788999999999998754 3444556778888888999999999999988763 2222 2344567778888999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh----hHHHHHHHHHhhcChhHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV----TYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~ 213 (764)
+|.|+.+|..+.+.... -......|+..|-...++++|+++-+.+.+.+..+..+ -|..+-..+....+++.|.
T Consensus 123 ~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 123 LDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999988653222 23467789999999999999999999888876555443 3444444555566777777
Q ss_pred HHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
.++.+..+..+.++-+--.+.+.+...|+++.|.+.++.+.+.+..-- .
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl-------------------------------~ 249 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL-------------------------------S 249 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-------------------------------H
Confidence 777777766666666666677777777777777777777766322111 1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
.+...|..+|.+.|+.++....+..+.+.. +....-..+-..-......+.|..++.+-... +|+...+..+|+..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 456667777777777777777777766642 23333333333333334445555555444433 35555555555543
No 45
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=1.6e-07 Score=95.92 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=145.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
+..++..| ..+++...+++.+.+.++.+-.++ +.....-.+...|+.++|......-.+..+. +.+.|..+.-.+.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 33344433 345566666666666554443333 2222222334456666666665555543332 4555655555555
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCC
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
...++++|...|....+-.+.|...+.-+--.-+..++++.....-....+ ..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~---------------------- 142 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQ---------------------- 142 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhh----------------------
Confidence 566667777777666666666666666666666666677666666666655 33333
Q ss_pred ccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHH------HHHhcCChhHHHHHHHHHHHC
Q 004269 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIR------AIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~ 357 (764)
...|..+..++.-.|++..|..++++..+.. -.|+...|.-... ...+.|.++.|.+-+..-...
T Consensus 143 --------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 143 --------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 2477777777777788888887777776643 2355544433222 233556666666655544332
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHH-HHHHHHhcCCHHHHH-HHHHHHhc
Q 004269 358 NLKPQDST-IATLSVECSKALELDLAEALLDQISRCT-NPKPFSA-FLAACDTMDKPERAI-KIFAKMRQ 423 (764)
Q Consensus 358 ~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~-li~~~~~~~~~~~a~-~l~~~m~~ 423 (764)
+. |... -..-...+.+.+++++|..++..+..+. |...|.- +..++.+-.+..+++ .+|....+
T Consensus 215 -i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 215 -IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred -HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11 2222 2345566777788888888888877664 4444443 333343333333343 55555443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.5e-08 Score=96.33 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=145.7
Q ss_pred HHHhcCcHHHHHHHHHhc-C-CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHH
Q 004269 486 ALGAEGMIRELIQYFCDS-K-TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563 (764)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 563 (764)
-|.-.++.+.|...|+.. . .+.....|+-|.+-|....+...|++-++..++-+ +.|-..|-.+-++|...+...-|
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHH
Confidence 344556667777777654 2 23345689999999999999999999999998864 44777888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 004269 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ- 642 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 642 (764)
+-+|++..+.. +-|...|.+|.++|.+.+++++|++.|.+....| ..+...+..|...|-+.++.++|...+++.++
T Consensus 418 LyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 418 LYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999863 4578999999999999999999999999998765 44668899999999999999999999888765
Q ss_pred ---CCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHH
Q 004269 643 ---NKVQPDPST--CHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 643 ---~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
.|..-+... ..-|..-+.+.+++++|..+...
T Consensus 496 ~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 496 SELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 233322221 12234467788999998776653
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.35 E-value=4.7e-10 Score=117.56 Aligned_cols=294 Identities=8% Similarity=-0.091 Sum_probs=209.3
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh--cHHHHH
Q 004269 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD--DFFHIL 94 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll 94 (764)
-..+|+++.|. +......+..|+|..+.+ .........|+++.|.+.+....+.. |+.. .-....
T Consensus 94 a~~~g~~~~A~----------~~l~~~~~~~~~~~~~~l-laA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a 160 (409)
T TIGR00540 94 KLAEGDYAKAE----------KLIAKNADHAAEPVLNLI-KAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART 160 (409)
T ss_pred HHhCCCHHHHH----------HHHHHHhhcCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence 34588999998 333334455566544444 44566778899999999999987654 4443 333346
Q ss_pred HHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH-H---HHHHHhc
Q 004269 95 NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN-S---FLGACAK 170 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-~---li~~~~~ 170 (764)
..+...|+++.|.+.++.+.+.. +-++.++..+...|...|++++|.++++.+.+. +.. +...+. . ...++..
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999986 557788999999999999999999999999754 322 222221 1 1111122
Q ss_pred cCCHHHHHHHHHHHhhcCCC---CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH--hhccCCHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVG---KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS--FTRLRDLKS 245 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~ 245 (764)
.+..++..+.+..+.+..+. .+...+..+...+...|+.++|.+.++...+..+.+......++.. ....++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 33333334455555443221 3778888888999999999999999999998766665322112222 234578888
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 325 (764)
+.+.++...+ ..|+++.. ....++...+.+.|++++|.+.|+........
T Consensus 318 ~~~~~e~~lk--~~p~~~~~----------------------------~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 318 LEKLIEKQAK--NVDDKPKC----------------------------CINRALGQLLMKHGEFIEAADAFKNVAACKEQ 367 (409)
T ss_pred HHHHHHHHHH--hCCCChhH----------------------------HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC
Confidence 9999988887 55655100 25567889999999999999999954444457
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 326 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
||...+..+...+.+.|+.++|.+++++...
T Consensus 368 p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 368 LDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999899999999999999999999998643
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=3e-09 Score=102.15 Aligned_cols=286 Identities=14% Similarity=0.017 Sum_probs=211.6
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
..|+|..|.++..+-.+.+ ......|..-.++.-+.||.+.+-.++.+..+.--.++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4799999999998877665 233345666667777889999999999999887446677777788888899999999998
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh-------hHHHHHHHHHhhcChhHHHHHH
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV-------TYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
-+++..+.. +.+.........+|.+.|++.....++..|.+.|.--++. +|..+++-....++.+.-...|
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 888886533 3355678888999999999999999999999988765554 6777777777777777777778
Q ss_pred HHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhH
Q 004269 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
+........++..-.+++.-+..+|+.++|.++..+..+++.+|..
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---------------------------------- 298 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---------------------------------- 298 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----------------------------------
Confidence 7777777777777788888888888888888888888876655532
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 297 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
...-.+.+-++...-++..++-.+.. .-++-.+.+|-..|.+.+.|.+|...|+...+ ..|+..+|+-+.+.+.+.
T Consensus 299 -~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 299 -CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred -HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 12234455666666666666655432 11335566677777788888888888886655 356777777777777777
Q ss_pred CCHHHHHHHHHHHh
Q 004269 377 LELDLAEALLDQIS 390 (764)
Q Consensus 377 g~~~~a~~~~~~~~ 390 (764)
|+.++|.+++++..
T Consensus 375 g~~~~A~~~r~e~L 388 (400)
T COG3071 375 GEPEEAEQVRREAL 388 (400)
T ss_pred CChHHHHHHHHHHH
Confidence 77777777776643
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=4.9e-10 Score=114.31 Aligned_cols=283 Identities=11% Similarity=-0.045 Sum_probs=132.4
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccCCH-HHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYL-EEA 141 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~-~~A 141 (764)
.-++++|+..|.++... +.-+......+.++|...++++.+..+|+.+.+.. ..-+..+|.+.+--+-+.-.. --|
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 33455566666553332 22333444445555555555666666665555432 111344555444333211000 011
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
..+.+. +. -...+|-++.+.|.-+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|...+
T Consensus 411 q~Li~~----~~--~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 411 QDLIDT----DP--NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHhh----CC--CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 122221 11 12235555555555555666666655555542 23 44444444444455555555555555555
Q ss_pred hcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHH
Q 004269 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
.-.+.+-.+|.-+...|.+.++++.|.-.|++..+ +.|.. .+....+.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~n------------------------------svi~~~~g 530 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSN------------------------------SVILCHIG 530 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccc------------------------------hhHHhhhh
Confidence 54444445555555555555555555555555554 33333 12333344
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
..+-+.|+.|+|+++|++......+ |+.+---....+...++.++|+..++++.+.-+. +..++..+...|-+.|+.+
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccch
Confidence 4455555555555555555543311 2333223333444455555555555555553222 3333444444555555555
Q ss_pred HHHHHHHHHh
Q 004269 381 LAEALLDQIS 390 (764)
Q Consensus 381 ~a~~~~~~~~ 390 (764)
.|..-|.-+.
T Consensus 609 ~Al~~f~~A~ 618 (638)
T KOG1126|consen 609 LALLHFSWAL 618 (638)
T ss_pred HHHHhhHHHh
Confidence 5544444443
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=4.2e-10 Score=114.82 Aligned_cols=282 Identities=8% Similarity=-0.027 Sum_probs=190.7
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHH
Q 004269 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLC 180 (764)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 180 (764)
+.++|...|+..... +.-+.++...+..+|...+++++|+++|+.+.+..+... +..+|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345677777773333 344556777778888888888888888888866544332 344677666544332 22222
Q ss_pred HH-HHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 181 LD-LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 181 ~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
+. .+.+. -+-.+.||.++-.+|.-+++.+.|.+.|++.++-.+....+|+.+.+-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 21 11121 1235678888888888888888888888888777777778888888888888888888888887765 33
Q ss_pred CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004269 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339 (764)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 339 (764)
|..+ .+|--+.-.|.+.++++.|.-.|+...+.+. -+.+....+...+-
T Consensus 486 ~rhY------------------------------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 486 PRHY------------------------------NAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQH 534 (638)
T ss_pred chhh------------------------------HHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHH
Confidence 3321 3566667778888888888888888776542 24455555666677
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
+.|+.++|+++++++...+.+ |+-.--.-+..+...++.++|...+++++... +...+..+...|.+.|+.+.|+.-
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 778888888888888776655 33333334445566778888888888887653 566677778888888888888877
Q ss_pred HHHHhc
Q 004269 418 FAKMRQ 423 (764)
Q Consensus 418 ~~~m~~ 423 (764)
|.-+..
T Consensus 614 f~~A~~ 619 (638)
T KOG1126|consen 614 FSWALD 619 (638)
T ss_pred hHHHhc
Confidence 777766
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=9.6e-09 Score=95.58 Aligned_cols=224 Identities=9% Similarity=0.063 Sum_probs=136.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHH
Q 004269 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS---TIATLSVECSKALELDL 381 (764)
Q Consensus 305 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 381 (764)
-+++.++|.++|-+|.+.. +-+..+--+|-+.|.+.|..+.|.+++..+.++.--+... ....|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4688999999999999742 1123345567788889999999999999998753221211 23467778999999999
Q ss_pred HHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhH
Q 004269 382 AEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458 (764)
Q Consensus 382 a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
|+.+|..+.+.+ -...--.|+..|-...++++|+++-+++.. +-.+. +.-|.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eIA--------------------- 180 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEIA--------------------- 180 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHHH---------------------
Confidence 999999999864 344566789999999999999999888876 32222 11111
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 004269 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPLG-TPTYNTVLHSLVEAQESHRAMEIFKQMK 536 (764)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~l~~~m~ 536 (764)
..|..|...+.-..+++.|...+.+. ...|. +..--.+...+...|+++.|.+.++...
T Consensus 181 -------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 181 -------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred -------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 11223334444444555555555442 11222 2222223344455555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 004269 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573 (764)
Q Consensus 537 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 573 (764)
+.+..--..+...|..+|.+.|+.+++..++..+.+.
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5543333334445555555555555555555555443
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=6.8e-12 Score=86.56 Aligned_cols=50 Identities=36% Similarity=0.574 Sum_probs=41.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004269 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.6e-07 Score=88.46 Aligned_cols=463 Identities=10% Similarity=0.041 Sum_probs=228.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..+..+.++..|+.+++.-...+-.-...+-..+..++...|++++|...+.-+.+.+ .++...+-.|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677788888888887766544322222222333445556788888888888777654 44445555555555556778
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
.+|..+-....+ +...-..|...--+.++-++-...-+.+.+. ..--.+|.+.....-.+++|.+++..
T Consensus 108 ~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888777654431 2223334444445556665555544444331 12222333333444456666666666
Q ss_pred HHhcCCCCHhhHHHHHH-HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHH
Q 004269 219 YIKHYSLSIFSLRKFVW-SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (764)
+... .|.-...|..+. +|.+.+-++-+.++++-..+ -.|+.+ ++-|
T Consensus 177 vL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdSt------------------------------iA~N 223 (557)
T KOG3785|consen 177 VLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDST------------------------------IAKN 223 (557)
T ss_pred HHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcH------------------------------HHHH
Confidence 5542 222222332222 34555555666665555544 233331 1222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004269 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (764)
.......+.=+-..|.+-..++...+-. .| ..+.-+++. ++. --.
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~f~~~l~rH----------------NLV--------------vFr 268 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQ----EY-PFIEYLCRH----------------NLV--------------VFR 268 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhcccc----cc-hhHHHHHHc----------------CeE--------------EEe
Confidence 2222222211112222222232222100 01 011111111 000 001
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhh
Q 004269 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457 (764)
Q Consensus 378 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 457 (764)
.-+.|.+++-.+.+. -+.+--.|+--|.+++++.+|..+.+++.- ..|-.+..-.+..+-
T Consensus 269 ngEgALqVLP~L~~~-IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P-ttP~EyilKgvv~aa------------------ 328 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH-IPEARLNLIIYYLNQNDVQEAISLCKDLDP-TTPYEYILKGVVFAA------------------ 328 (557)
T ss_pred CCccHHHhchHHHhh-ChHhhhhheeeecccccHHHHHHHHhhcCC-CChHHHHHHHHHHHH------------------
Confidence 223344444333322 222223344446666666666666555432 233333222222111
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHH
Q 004269 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP----LGTPTYNTVLHSLVEAQESHRAMEIFK 533 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~l~~ 533 (764)
+-.-......+.-|...|.-.+.. ..+.--.++.+.+.-..++++.+..++
T Consensus 329 -------------------------lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yln 383 (557)
T KOG3785|consen 329 -------------------------LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLN 383 (557)
T ss_pred -------------------------hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 001111112233344444332211 122234455556666667777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004269 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613 (764)
Q Consensus 534 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 613 (764)
.++.--...|...| .+..+.+..|.+.+|.++|-.+....++-+..-.+.|.++|.++++++-|++++-++. -+.+
T Consensus 384 Si~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e 459 (557)
T KOG3785|consen 384 SIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSE 459 (557)
T ss_pred HHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---Cchh
Confidence 77665333333333 4567778888888888888776554444333333566778888888888888876653 1223
Q ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 614 VLL-YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652 (764)
Q Consensus 614 ~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 652 (764)
..+ ...+..-|.+.+.+=-|-+.|+.+.. ..|++..|
T Consensus 460 ~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 460 RFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 333 33445667888887777777877764 55666655
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-08 Score=99.36 Aligned_cols=307 Identities=9% Similarity=-0.063 Sum_probs=217.1
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCH-
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYL- 138 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~- 138 (764)
+-...+.++++.-.+.+...|.+.+...-+....+.-...|++.|..+|+++.+.+. --|..+|+.++-+--.+.++
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 334456677777666666666444443333333333355788888888888887741 12566777766433322221
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
--|..+++ -+..+|. |+-.+.+-|+-.++.++|...|++..+.++. ....|+.+..-|....+-..|.+-++.
T Consensus 317 ~LA~~v~~----idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 317 YLAQNVSN----IDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH----hccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 13333332 2333444 6666777788888999999999998886533 556788888889999999999999999
Q ss_pred HHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHH
Q 004269 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.++-.|.|-.+|-.|..+|.-.+.+.-|+-.|++..+ .+|++ ...|.+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnD------------------------------sRlw~a 437 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPND------------------------------SRLWVA 437 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCc------------------------------hHHHHH
Confidence 9998999999999999999999999999999999888 77776 368999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHH--HHHHHHH
Q 004269 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ----NNLKPQDST--IATLSVE 372 (764)
Q Consensus 299 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~--~~~li~~ 372 (764)
|..+|.+.++.++|++.|......|- .+...+..|.+.+-+.++..+|...|...++ .|...+... ..-|...
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 99999999999999999999888662 2557888899999999999999988887765 233322222 2245566
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
+.+++++++|.........- .-..++|..+++++++
T Consensus 517 f~k~~~~~~As~Ya~~~~~~---------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLVLKG---------------ETECEEAKALLREIRK 552 (559)
T ss_pred HHhhcchHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHH
Confidence 77788888776554433321 3446778888888776
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=1.4e-06 Score=89.11 Aligned_cols=476 Identities=10% Similarity=-0.006 Sum_probs=287.3
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
+...+..+-..+++...+.+.+.+.+.. +-...+.....-.+...|+.++|........+.+ ..+.+.|..+.-.+-.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 3334555667788888888888777632 3344444443334445688999999888888765 4567788888877778
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 214 (764)
..++++|++.|.....-. +.|...|.-+--.-++.|+++.....-....+..+ -....|....-++.-.|+...|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999886422 44666777776666777888887777766666422 244567777777778899999999
Q ss_pred HHHHHHhcC--CCCHhhHHHHHH------HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 215 IWEDYIKHY--SLSIFSLRKFVW------SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 215 ~~~~~~~~~--~~~~~~~~~li~------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
+.+...+.. .|+...+..... ...+.|..+.|.+.+......-++.-
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl------------------------- 219 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL------------------------- 219 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-------------------------
Confidence 999998753 566666554433 34566777777777665543111100
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hcC-ChhHHHHHHHHHHHCCCCCCHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SDR-GLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~ 364 (764)
..-.+-...+.+.+++++|..++..+... .||...|...+..+. +.. .......+|....+.-......
T Consensus 220 -------a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 220 -------AFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred -------HHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 12223455677889999999999999886 578877766665444 233 3333336666554432111100
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCC
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~ 444 (764)
. ..=++...-..-.+..-.++......|-+.++..+.+-|-.-...+ ++++.. ..|...+........
T Consensus 291 ~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~----~le~Lv-------t~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 291 R-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA----FLEKLV-------TSYQHSLSGTGMFNF 358 (700)
T ss_pred h-hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH----HHHHHH-------HHHHhhcccccCCCc
Confidence 0 0000000001111222233334444434445555554443322222 222111 111111111110000
Q ss_pred chhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHH--HHHHHHhcCcHHHHHHHHHhc-CCCCChh-hHHHHHHHHH
Q 004269 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN--LLKALGAEGMIRELIQYFCDS-KTPLGTP-TYNTVLHSLV 520 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~li~~~~ 520 (764)
. +. ...-+|+...|+. ++..|-+.|+++.|...++.. ...|+.+ .|.+-...+.
T Consensus 359 ~----------D~------------~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 359 L----------DD------------GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFK 416 (700)
T ss_pred c----------cc------------cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 0 00 0011455555554 788899999999999999875 4455543 5666667888
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHH--------HHH--HHHHHH
Q 004269 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT--------YTA--LIKILL 590 (764)
Q Consensus 521 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~--------~~~--li~~~~ 590 (764)
..|++++|..++++.++.+ .||...-+--..-..+++..++|..+.....+.|. +... |-. =..+|.
T Consensus 417 H~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~ 493 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYL 493 (700)
T ss_pred hcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHH
Confidence 9999999999999998876 45655544555566678999999999999988875 2222 211 135677
Q ss_pred hcCCHHHHHHHHHHHH
Q 004269 591 DYGDFDEALNLLDLVS 606 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~ 606 (764)
+.|++.+|++=|..+.
T Consensus 494 r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 494 RQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 8888877776665543
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.1e-06 Score=91.71 Aligned_cols=588 Identities=13% Similarity=0.103 Sum_probs=302.2
Q ss_pred HHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH
Q 004269 13 IADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92 (764)
Q Consensus 13 ~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (764)
.+..|...|.++++. . |-...|+.|+ |..++....+ -.++.+.++...|.+.. +....++.
T Consensus 487 Vi~cfAE~Gqf~Kii-l----------Y~kKvGyTPd-----ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~ 547 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKII-L----------YAKKVGYTPD-----YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQ 547 (1666)
T ss_pred HHHHHHHhcchhHHH-H----------HHHHcCCCcc-----HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHH
Confidence 455666677777766 2 2223566555 3344444444 67888888887777644 22222333
Q ss_pred HHHHhhCC----------------CChhH---HHHHHHHHHH-----------cCccccHHHHHHHHHHHHccCCHHHHH
Q 004269 93 ILNYCARS----------------PDPLF---VMETWRMMEE-----------KEIGLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 93 ll~~~~~~----------------~~~~~---a~~~~~~m~~-----------~~~~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
+...+... ..++. -.++++.-.. .++ -+..-+..+.+.|.++|-...|+
T Consensus 548 I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraL 626 (1666)
T KOG0985|consen 548 IVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRAL 626 (1666)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHH
Confidence 33322222 22221 1122222111 111 01122556777888899999998
Q ss_pred HHHHHHhhhcC--CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 143 NLIYFLGERYG--IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 143 ~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
+.+..+..-.. +..+...=..+ -.|.-.-.++.+.+.++.|...++.-+..+...+..-|...=..+...++|+...
T Consensus 627 ehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fk 705 (1666)
T KOG0985|consen 627 EHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFK 705 (1666)
T ss_pred HhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhc
Confidence 87776643110 00000011122 2344456789999999999998888888887777777777666677777777765
Q ss_pred h------------cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcccc
Q 004269 221 K------------HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 221 ~------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
. .+..|+.+.-..|.+.++.|++.+..++-++- +.+.+..+...+.++++....|.-....
T Consensus 706 s~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres-------n~YdpErvKNfLkeAkL~DqlPLiiVCD 778 (1666)
T KOG0985|consen 706 SYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES-------NCYDPERVKNFLKEAKLTDQLPLIIVCD 778 (1666)
T ss_pred cchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc-------ccCCHHHHHHHHHhccccccCceEEEec
Confidence 3 25678888889999999999999988775542 1111122234455555555555432222
Q ss_pred c-----hhhhhhHH----HHHHHHHccCCHHHHHHHHHHHHHCCCC-----------CCcccHHHHHHHHHhcCChhHHH
Q 004269 289 M-----KVLRWSFS----DVIHACGRTQNSGLAEQLMLQMQSLGLQ-----------PSSHTYDGFIRAIVSDRGLRNGM 348 (764)
Q Consensus 289 ~-----~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~-----------p~~~~~~~ll~~~~~~~~~~~a~ 348 (764)
| +...+.|. -.|..|.+.=++...-.+...+..-.+. ...+...-|..-+-+.+++..-.
T Consensus 779 Rf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLl 858 (1666)
T KOG0985|consen 779 RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLL 858 (1666)
T ss_pred ccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHH
Confidence 2 11111111 1123333332222222222111111100 01112233344445556666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHH---------
Q 004269 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA--------- 419 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~--------- 419 (764)
-.++.....|.. |..++++|...|...++-.+- ++. . +..-=+..+.-||...++.-|.-.|+
T Consensus 859 p~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLk----e-N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI 930 (1666)
T KOG0985|consen 859 PWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLK----E-NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELI 930 (1666)
T ss_pred HHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcc----c-CCcchhhHHhhhhcccCCceEEEeecccCCcHHHH
Confidence 667777777766 777788877777665432211 000 0 11111122233443333322221111
Q ss_pred ----------HHhc--cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC--ccHHHHHHHHH
Q 004269 420 ----------KMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ--HSHISMKNLLK 485 (764)
Q Consensus 420 ----------~m~~--~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 485 (764)
...+ --+.|...|..++. . ....-..+...+...+++ .|+...+..+.
T Consensus 931 ~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~----------------e--~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 931 NVCNENSLFKSQARYLVERSDPDLWAKVLN----------------E--ENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred HhcCchhHHHHHHHHHHhccChHHHHHHHh----------------c--cChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 1111 01223333333331 0 001111233344444443 24455566788
Q ss_pred HHHhcCcHHHHHHHHHhcCCCCChhh-----HHHHHHHHHHcCChHHHHHHHHHHHhCC---------------------
Q 004269 486 ALGAEGMIRELIQYFCDSKTPLGTPT-----YNTVLHSLVEAQESHRAMEIFKQMKTCG--------------------- 539 (764)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~A~~l~~~m~~~g--------------------- 539 (764)
++...+...+.+++++++...+++++ -|.+|-...+ -+..+.++..+++-.-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~if 1071 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIF 1071 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHH
Confidence 88888888888888888755554432 2223322222 22233333333332221
Q ss_pred --CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 540 --IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 540 --~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
+..+......+|. ..+.+++|.++-+.. -.+..|+.+..+-.+.|.+.+|.+-|-+ ..|+..|
T Consensus 1072 kkf~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y 1136 (1666)
T KOG0985|consen 1072 KKFDMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNY 1136 (1666)
T ss_pred HHhcccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHH
Confidence 0112222222222 223444444443332 2455677788888888888887776654 2466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
.-+++.+.+.|.+++-.+.+...++..-+|...+ .|+-+|++.++..+..+++
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 8888888888888888877776666555555443 5677777777777766554
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=5e-08 Score=95.93 Aligned_cols=191 Identities=16% Similarity=0.131 Sum_probs=140.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 004269 480 MKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557 (764)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 557 (764)
|-.+..+|....+.++..+.|+.. ..+-|..+|..-...+.-.+++++|..=|++.+... +-+...|..+--+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 334555677777777777777654 223355567766677777789999999999988853 22455666666667788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC--HHHHHHHHHHHHHcCCH
Q 004269 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-----IPHD--VLLYNTILKKACEKGRI 630 (764)
Q Consensus 558 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~--~~~~~~li~~~~~~g~~ 630 (764)
+.++++...|++..+. ++-.+..|+.....+...++++.|.+.|+..++.. +..+ +.+--.++-.-.+ +++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhH
Confidence 9999999999999876 66678899999999999999999999999987531 1112 2222333333233 899
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 631 DVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
..|+.++++..+ +.|. ...|..|-..-.+.|+.++|+++|++-
T Consensus 520 ~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 520 NQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999986 5564 446777778889999999999999853
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=1.6e-06 Score=88.53 Aligned_cols=466 Identities=12% Similarity=0.084 Sum_probs=254.7
Q ss_pred hhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCC------CCChhcHHHHHHHhhCCCChh---HHHH
Q 004269 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH------SLGADDFFHILNYCARSPDPL---FVME 108 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~---~a~~ 108 (764)
|.|.+-+++.|+. ...+ |.-+++.+++++|.+.+.+...... +-+-..|..+-...+++.+.- ....
T Consensus 159 rvyrRYLk~~P~~-~eey---ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda 234 (835)
T KOG2047|consen 159 RVYRRYLKVAPEA-REEY---IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA 234 (835)
T ss_pred HHHHHHHhcCHHH-HHHH---HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH
Confidence 7777778888886 3333 5557889999999999988875431 222334555556656554333 2344
Q ss_pred HHHHHHHcCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC--------------
Q 004269 109 TWRMMEEKEIGLNN--KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH-------------- 172 (764)
Q Consensus 109 ~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-------------- 172 (764)
++..+... -+|. ..|++|..-|.+.|.++.|..+|++.... ..++.-|..+.++|++-.
T Consensus 235 iiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 235 IIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 55554443 3443 48899999999999999999999987643 123334455555554321
Q ss_pred --------CHHHHHHHHHHHhhcCC-----------CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC------H
Q 004269 173 --------SMVHANLCLDLMDSRMV-----------GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS------I 227 (764)
Q Consensus 173 --------~~~~A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~ 227 (764)
+++-.+.-|+.+..... ..++.+|..-++ ...|+..+....+.+.++...|- .
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPG 387 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChh
Confidence 12222333333332211 012222222222 23455666677777777653332 3
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 307 (764)
..|..+...|-..|+++.|..+|++..+-....-... ..+|-.-...=.++.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL----------------------------a~vw~~waemElrh~ 439 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL----------------------------AEVWCAWAEMELRHE 439 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH----------------------------HHHHHHHHHHHHhhh
Confidence 3577888889999999999999998876322211100 246666667777888
Q ss_pred CHHHHHHHHHHHHHCCCCCCc--------------------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 308 NSGLAEQLMLQMQSLGLQPSS--------------------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~g~~p~~--------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (764)
+++.|+.+++.... .|.. ..|...+..--..|-++....+|+.+.+..+. ++.+.-
T Consensus 440 ~~~~Al~lm~~A~~---vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~ 515 (835)
T KOG2047|consen 440 NFEAALKLMRRATH---VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIII 515 (835)
T ss_pred hHHHHHHHHHhhhc---CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 88888888877653 2222 11222233333456666666667766666554 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC----CCccHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Q 004269 368 TLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTM---DKPERAIKIFAKMRQKLRPDIRTYELLFSLFG 440 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~li~~~~~~---~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~ 440 (764)
.....+-.+.-++++.++++.-.... --..|+..+.-+.+. ..++.|..+|++..++++|...-+..++-+
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA-- 593 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYA-- 593 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Confidence 33334444555666666665543322 112456555554432 356666677766666555544333322211
Q ss_pred CCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC--CC--hhhHHHHH
Q 004269 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP--LG--TPTYNTVL 516 (764)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~li 516 (764)
..=-+.|....|.+++++.... +. ...||+.|
T Consensus 594 --------------------------------------------~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 594 --------------------------------------------KLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred --------------------------------------------HHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0011234555566666553221 11 22566666
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhhCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID---CCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~---~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~ 592 (764)
.--+..=.+.....+|++.++. -||...-...|. .=++.|..+.|..++..-.+. ....+...|.+.=..=.+.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 5444444444455566666554 455544333332 234556666666666554443 2333444555555555555
Q ss_pred CC
Q 004269 593 GD 594 (764)
Q Consensus 593 g~ 594 (764)
|+
T Consensus 708 Gn 709 (835)
T KOG2047|consen 708 GN 709 (835)
T ss_pred CC
Confidence 55
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.3e-11 Score=83.93 Aligned_cols=49 Identities=35% Similarity=0.620 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625 (764)
Q Consensus 577 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 625 (764)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=7.9e-08 Score=92.59 Aligned_cols=288 Identities=13% Similarity=0.047 Sum_probs=191.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004269 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384 (764)
Q Consensus 305 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (764)
-.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.+.-+.--.++..++-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3799999999999988776432 345666667788999999999999999887556677777788888999999999999
Q ss_pred HHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHH
Q 004269 385 LLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461 (764)
Q Consensus 385 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (764)
-.+++.... ++..-.....+|.+.|++.+...++.+|.+ ++--|...-..
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 988887654 777888899999999999999999999998 65444322100
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004269 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
...+++.+++-....+..+.-...+++.. .+.+...-.+++.-+.+.|+.++|.++..+..+++
T Consensus 228 --------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 228 --------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred --------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 01122223333333333333223333221 12234444556666677777777777777777766
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004269 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 618 (764)
..|+..+ +-.+.+.++.+.-.+..+.-.+. +- ++-.+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+
T Consensus 294 ~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~ 365 (400)
T COG3071 294 WDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYA 365 (400)
T ss_pred cChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHH
Confidence 6555222 12344556665555555444433 33 335566677777777777777777776553 367777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 619 TILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
-+..++.+.|+..+|.+..++...
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 777777777777777777666554
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.4e-08 Score=98.08 Aligned_cols=323 Identities=11% Similarity=-0.067 Sum_probs=200.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCC-hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLG-ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
...+-++|.+++|++.|.+.++.. |+ +.-|.....+|...|+++.+.+-....++.+ +.-+..+..-.+++-..|+
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhcc
Confidence 445667899999999999998865 77 6678888888889999999999999888874 2234567777788888888
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHh----------
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MVGKNEVTYTELLKLAVW---------- 205 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~---------- 205 (764)
+++|+.=+.-..--.|+. |..+--.+=+.+-+.+. ..+.+ .+... -+-|+.....+.+..+..
T Consensus 199 ~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a~-~ka~e---~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQAM-KKAKE---KLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHHH-HHHHH---hhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 888755332221111111 11110000011111110 11111 12211 122332222222221110
Q ss_pred ---------------hc---ChhHHHHHHHHHHhc--CCCCH-----------hhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 206 ---------------QK---NLSAVHEIWEDYIKH--YSLSI-----------FSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 206 ---------------~~---~~~~a~~~~~~~~~~--~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
.+ .+..+.+.+.+-..+ ..++. .+...-...+.-+|+.-.|..-|+...
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 01 122222222222111 11111 122222223456688888888888887
Q ss_pred HhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004269 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334 (764)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 334 (764)
+....++. .|--+...|...++.++.+..|+.....+.. |+.+|..-
T Consensus 354 ~l~~~~~~--------------------------------lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHR 400 (606)
T KOG0547|consen 354 KLDPAFNS--------------------------------LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHR 400 (606)
T ss_pred hcCcccch--------------------------------HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhH
Confidence 73333322 4666778889999999999999998876532 55566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHH
Q 004269 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPE 412 (764)
Q Consensus 335 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~ 412 (764)
-....-.+++++|..=|++.+..... +...|..+..+.-|.+.+++++..|++...+. .+..|+.....+..+++++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence 66666678899999999988876544 45556666667778889999999999988765 6778999999999999999
Q ss_pred HHHHHHHHHhc
Q 004269 413 RAIKIFAKMRQ 423 (764)
Q Consensus 413 ~a~~l~~~m~~ 423 (764)
.|.+.|+...+
T Consensus 480 ~A~k~YD~ai~ 490 (606)
T KOG0547|consen 480 KAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHh
Confidence 99999988776
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.4e-06 Score=82.29 Aligned_cols=201 Identities=12% Similarity=0.069 Sum_probs=127.3
Q ss_pred HHHHHhcCcHHHHHHHHHhcCC-CCChhhHHHHH-----HHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHh
Q 004269 484 LKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVL-----HSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSI 556 (764)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li-----~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~ 556 (764)
+--|.+.+++.+|..+..+..+ .|-....-.+. .-........-|.+.|+-.-+++..-|... -.++..++.-
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 3456788899999998877622 12221111111 111122234567777766655554433321 2334445555
Q ss_pred hCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHH
Q 004269 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT-ILKKACEKGRIDVIEF 635 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~ 635 (764)
..++++.+-+++.+...-..-|.+.+| +..+++..|...+|+++|-++....++ |..+|.+ |.+.|.+.++.+.|..
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHH
Confidence 667889999998888765555666665 788999999999999999888654444 4455554 5667788889988876
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHhhhccccCchHhhh
Q 004269 636 IIEQMHQNKVQPDPSTCHFVF-SGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691 (764)
Q Consensus 636 ~~~~m~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 691 (764)
++-++ +-..+....--+| +.|.++|.+=-|-+.|+.++.-. |.+..|.-.+
T Consensus 450 ~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWeGKR 501 (557)
T KOG3785|consen 450 MMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWEGKR 501 (557)
T ss_pred HHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccCCcc
Confidence 64443 4444555555555 48889999988889999887643 4444554443
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=7.8e-06 Score=83.60 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCC---------
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRCT--N----PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPD--------- 428 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~--------- 428 (764)
.+..+...|-..|+++.|+.+|+...+-+ . ..+|-.-...=.+..+++.|+++.+.... .-.|.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 35567777888888888888888877653 0 12333333444556677777777666544 11111
Q ss_pred --HHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc---
Q 004269 429 --IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--- 503 (764)
Q Consensus 429 --~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--- 503 (764)
...+.++. ..+.. .++.+.++..+..+.+++.+....+.... +.-...-.+..+..++++.+++++.
T Consensus 469 vQ~rlhrSlk-iWs~y------~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 469 VQARLHRSLK-IWSMY------ADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHhHH-HHHHH------HHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 01111110 00000 01111122223334445555555443222 1122222334455677788877764
Q ss_pred CCCCChh-hHHHHHHHHHHc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhhCChhHHHHHHHHHHHCCCCC
Q 004269 504 KTPLGTP-TYNTVLHSLVEA---QESHRAMEIFKQMKTCGIPPNAATYNIMIDCC--SIIRCFKSASALVSMMVRDGFYP 577 (764)
Q Consensus 504 ~~~~~~~-~~~~li~~~~~~---~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~p 577 (764)
-..|++. .||..+.-+.+. ...+.|..+|++..+ |++|...-+.-|+-+- -..|....|..++++.... +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~ 618 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKE 618 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCH
Confidence 1234443 677766665553 356788888888877 5655443332222211 1236667777888776543 333
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCC--CHH
Q 004269 578 Q--TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL---KKACEKGRIDVIEFIIEQMHQNKVQP--DPS 650 (764)
Q Consensus 578 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~ 650 (764)
. ...||..|.--...=-+.....+|++.++. -||...-...| ..=++.|..++|..++..--+- +.| +..
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~ 695 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTE 695 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChH
Confidence 2 245666665444333344455666666654 45544333322 3335678888888887765432 333 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 004269 651 TCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
.|.+.-..=.+.|+-+...+.++
T Consensus 696 fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 696 FWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 44444444567777554444443
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=6.9e-09 Score=100.64 Aligned_cols=201 Identities=14% Similarity=-0.012 Sum_probs=166.8
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|++.+++..... +.+...+..+...+...|+++.|.+.+++..+.+ +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4555566778889999999999999988765 4456677888889999999999999999999875 4466788888999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
+...|++++|.+.|++.......+.....+..+...+...|++++|...|+...+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998753222233456777888899999999999999998876432 45678888889999999999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
|...++...+..+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999887666778888888999999999999999888765
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.7e-06 Score=87.10 Aligned_cols=333 Identities=7% Similarity=-0.099 Sum_probs=178.0
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+++.+..+.++.-|+-+-++....+ .++..--.+.+++.-.++.+.|..+...-.-. ..|..+.......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 3344555667788888888888888876554 66666667788887788888887777654322 3466666677777
Q ss_pred HHccCCHHHHHHHHHHHhhh-cCC-----------CCChhh----hHHHH-------HHHhccCCHHHHHHHHHHHhhcC
Q 004269 132 LCKGGYLEEASNLIYFLGER-YGI-----------YPILPV----YNSFL-------GACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~-~~~-----------~~~~~~----~~~li-------~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
+.+...+++|..++..-... .++ .+|..- -+.-. ..|....+.++|...|.+....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~- 170 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA- 170 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-
Confidence 88888899998888722100 000 011000 01111 1122223344444444443322
Q ss_pred CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhccc
Q 004269 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR-DLKSAYETLQHMVALAMMGKLYINRT 267 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (764)
|...|..+..... ...-.+.+-|+.+.. .|... -.+ +.+.-..+|+........-...+.
T Consensus 171 ---D~~c~Ea~~~lvs--~~mlt~~Ee~~ll~~---l~~a~---------~~~ed~e~l~~lyel~~~k~~n~~~~~r-- 231 (611)
T KOG1173|consen 171 ---DAKCFEAFEKLVS--AHMLTAQEEFELLES---LDLAM---------LTKEDVERLEILYELKLCKNRNEESLTR-- 231 (611)
T ss_pred ---chhhHHHHHHHHH--HHhcchhHHHHHHhc---ccHHh---------hhhhHHHHHHHHHHhhhhhhcccccccc--
Confidence 3333322221110 001111111111110 00000 001 111111122211100000000000
Q ss_pred ccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 004269 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 347 (764)
.+..+-..-..+. ...-.-..-+...+++.+..++++...+.. ++....+..=|..+...|+..+-
T Consensus 232 -----------~~~~sl~~l~~~~--dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~L 297 (611)
T KOG1173|consen 232 -----------NEDESLIGLAENL--DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKL 297 (611)
T ss_pred -----------CchhhhhhhhhcH--HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchH
Confidence 0000000000111 233445556677888888888888888753 45666666667777788887777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
..+=..+.+.-+. ...+|-++...|.-.|...+|++.|....... -...|-.+...|+-.|..+.|+..+...-+
T Consensus 298 f~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 298 FLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 7777777766444 55667777777777788888888888876653 345688888888888888888877766544
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=4.1e-09 Score=97.87 Aligned_cols=232 Identities=10% Similarity=0.075 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHH-HHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT-ELLK 201 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~ 201 (764)
+--+.+.+.|.+.|.+.+|.+.|+.-.+. .|-+.+|-.|-++|.+-.+.+.|+.+|.+-.+. .|..+||. -+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 33467788888888888888888876654 355568888888888888888888888877664 45556654 3555
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCc
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
.+...++.+.|.++|+...+..+.++.+...+...|.-.++++.|++.+.++.+.|+....
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------------------- 359 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------------------- 359 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-------------------
Confidence 6677888888888888888888888888777778888888888888888888888777654
Q ss_pred cCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH--TYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
.|+.+.-+|.-.+++|.++..|.+....--.|+.. .|-.+-...+..||+..|.+.|+.....+.
T Consensus 360 -------------Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 360 -------------LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred -------------HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 78888888888888888888888877654444432 354555566677888888888888887765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 392 (764)
. ....++.|...-.+.|+++.|..+++.....
T Consensus 427 ~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 427 Q-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred c-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 5 5566777777777888888888887776654
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=3.6e-08 Score=95.57 Aligned_cols=96 Identities=14% Similarity=-0.019 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 4455555566666666666666666554321 223344555555555555555555555555543211 2233333334
Q ss_pred HHHhhcChhHHHHHHHHHH
Q 004269 202 LAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~ 220 (764)
.+...|++++|.+.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 4444444444444444443
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.1e-05 Score=81.94 Aligned_cols=472 Identities=11% Similarity=0.069 Sum_probs=236.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH--Hhh
Q 004269 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA--VWQ 206 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~ 206 (764)
++.+...|++++|.+....+.. +.+.+...+..-+-++.+.+.+++|+++.+.-.. ...+.+-+ +=++| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 5677888999999999998864 3355666777888888899999999865543221 01111111 22333 367
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
+..++|...+..+ .+.|..+...-...+.+.|++++|.++|+.+.+.+.+..+
T Consensus 93 nk~Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d------------------------ 145 (652)
T KOG2376|consen 93 NKLDEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD------------------------ 145 (652)
T ss_pred ccHHHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH------------------------
Confidence 7777777777622 2333445555556677778888888888887764433221
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA---IVSDRGLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (764)
...-..++.+-. +... ..|......| ..+|..+.+. +...|++.+|+++++...+.+.+.
T Consensus 146 ------~~~r~nl~a~~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-- 208 (652)
T KOG2376|consen 146 ------EERRANLLAVAA-------ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-- 208 (652)
T ss_pred ------HHHHHHHHHHHH-------hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh--
Confidence 011111111110 0111 0122222233 3355555542 235677788877777763322110
Q ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH---
Q 004269 364 STIATLSVECSKALEL--DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL--- 438 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~--- 438 (764)
...++. ++-..-++ .+--.|...+...|+-.+|..++....+.-.+|........+.
T Consensus 209 ----------l~~~d~~eEeie~el~--------~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 209 ----------LEDEDTNEEEIEEELN--------PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVA 270 (652)
T ss_pred ----------hcccccchhhHHHHHH--------HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhh
Confidence 000000 00000000 0112233444555666666666666555223333222222221
Q ss_pred hcCCCCchhhchhhhhh-hhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHH
Q 004269 439 FGNVNAPYEEGNMFSQV-DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517 (764)
Q Consensus 439 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~ 517 (764)
+.....+.+. ..+... ............+...........-+.++.+|. +..+.+.++-......-....+.+++.
T Consensus 271 ~~~d~~~~d~-~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~ 347 (652)
T KOG2376|consen 271 LSKDQNYFDG-DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQ 347 (652)
T ss_pred hccccccCch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHH
Confidence 1111111110 000000 000000000000000000011111233444443 334445554444322222334444443
Q ss_pred HHHH--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHH--------HHHHCCCCCCHHHHHHHHH
Q 004269 518 SLVE--AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS--------MMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 518 ~~~~--~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~g~~p~~~~~~~li~ 587 (764)
...+ ......|.+++...-+..-.-.....-.++......|+++.|.+++. .+.+.+..|- +..+++.
T Consensus 348 ~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~ 425 (652)
T KOG2376|consen 348 EATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVA 425 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHH
Confidence 3322 23467777777777665322223445556666778899999999988 5555444444 4556777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 588 ILLDYGDFDEALNLLDLVSLE--GIPHDVL----LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 661 (764)
.+.+.++.+.|..++.+...- .-.+... ++.-+...-.+.|+.++|..+++++... ..+|..+...++.+|++
T Consensus 426 l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 426 LYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh
Confidence 888887776676666665421 1112222 3344444445779999999999999863 35677788888888887
Q ss_pred cCChHHHHHHHHHH
Q 004269 662 CGFHNSAMEALQVL 675 (764)
Q Consensus 662 ~g~~~~a~~~~~~~ 675 (764)
.. .+.|..+-+.+
T Consensus 505 ~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 505 LD-PEKAESLSKKL 517 (652)
T ss_pred cC-HHHHHHHhhcC
Confidence 64 56666655443
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=3.2e-05 Score=81.21 Aligned_cols=314 Identities=11% Similarity=-0.019 Sum_probs=174.7
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhh---CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCA---RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
.++.++++.-+......+.+.++.++..+...+. ..++.+++ ++-...+.-..|...++.+++.-.
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm--------- 308 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM--------- 308 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH---------
Confidence 5666777777777777766677766666554333 23444444 222222222222222222222111
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
-.+.++.. ..+.-+...|..|.-++...|+++.+.+.|++....-+ -....|..+-..+...|.-..|..+++...+
T Consensus 309 -~~~~k~r~-~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 309 -LLLRKLRL-KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -HHHHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 01111110 11223555666666666777777777777776554322 2444566666666666666667776666655
Q ss_pred cC--CCCHhhHHHHHHHhh-ccCCHHHHHHHHHHHHHhh--ccCcchhcccccccccccccCCCccCCccccchhhhhhH
Q 004269 222 HY--SLSIFSLRKFVWSFT-RLRDLKSAYETLQHMVALA--MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 222 ~~--~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.- ++|...+...-..|. +.+..++++.+-.++.... ...... ...|
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~-----------------------------~~~~ 436 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLK-----------------------------PRGY 436 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhh-----------------------------hhHH
Confidence 32 444444444444443 3345555555544444311 111000 0233
Q ss_pred HHHHHHHHc-----------cCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004269 297 SDVIHACGR-----------TQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 297 ~~li~~~~~-----------~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 364 (764)
-.+.-+|.. .....++++.+++..+.+ -.|++..|-++ -++..++++.|.+..++..+.+..-+..
T Consensus 437 l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 437 LFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 333333322 122457888888888765 23433333333 3566789999999999999987777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.+..|.-.+.-.+++.+|+.+.+...... |-.....-+..-...++.++++.....+..
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 88888888888999999999988776542 222222223334457888888888777765
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=5e-08 Score=106.45 Aligned_cols=244 Identities=10% Similarity=-0.016 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHh---------ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 137 YLEEASNLIYFLGERYGIYPI-LPVYNSFLGACA---------KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
++++|..+|++..+.+ |+ ...|..+..++. ..+++++|...+++..+..+. +..++..+-..+...
T Consensus 276 ~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 4567777777765432 32 234444443332 223467777777777665322 455566665666677
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
|++++|...+++..+..|.+...+..+..++...|++++|...+++..+ ..|...
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~----------------------- 406 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRA----------------------- 406 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCh-----------------------
Confidence 7777777777777776666677777777777777777777777777776 444431
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 365 (764)
..+..++..+...|++++|...+++..... .|+. ..+..+..++...|+.++|...+..+...... +...
T Consensus 407 -------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~ 477 (553)
T PRK12370 407 -------AAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIA 477 (553)
T ss_pred -------hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHH
Confidence 122233334555677777777777766542 2332 23444555666777777777777766544221 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.+.+...|...| +.|...++.+.+.. ....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 344444555555 35555555554422 11222 22334444555555444 55554
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.9e-06 Score=82.15 Aligned_cols=467 Identities=12% Similarity=0.022 Sum_probs=238.3
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 164 (764)
.+..-+..+++=+.....+..|.-+-++....+. |+..--.+...+.-.|+++.|..++..-.- ...|..+....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~ 88 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLA 88 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHH
Confidence 3444566666655555667777777777766653 444444567888889999999888775421 13477788888
Q ss_pred HHHHhccCCHHHHHHHHHHHhhc--CC-----------CCChhh----HHHHH-------HHHHhhcChhHHHHHHHHHH
Q 004269 165 LGACAKLHSMVHANLCLDLMDSR--MV-----------GKNEVT----YTELL-------KLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~--g~-----------~p~~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~ 220 (764)
...+.+..+++.|..++..-... .+ .+|..- -+.-. +.|....+.++|...|.+..
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 88999999999999998732110 01 111111 00000 12222333444444444433
Q ss_pred hcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHH
Q 004269 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
.........+..|+....- .+.+.|+.+.....
T Consensus 169 ~~D~~c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l~~------------------------------------------ 201 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHML-----TAQEEFELLESLDL------------------------------------------ 201 (611)
T ss_pred hcchhhHHHHHHHHHHHhc-----chhHHHHHHhcccH------------------------------------------
Confidence 2111111111111111110 01111111110000
Q ss_pred HHHHccCCHHHHHHHHHHH----------------HHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004269 301 HACGRTQNSGLAEQLMLQM----------------QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m----------------~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 364 (764)
+-....+.+.-..+|+-- .-.+..-+.........-|-...++.+...+.+...+... +...
T Consensus 202 -a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~ 279 (611)
T KOG1173|consen 202 -AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLP 279 (611)
T ss_pred -HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcc
Confidence 000000011111111100 0001122223333333444456677777777777666532 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCC
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNV 442 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~ 442 (764)
.+-.-|.++...|+..+-..+=..+.+.. .+.+|-++.--|.-.|+.++|.+.|.+... +.|. |
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~-lD~~---f---------- 345 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT-LDPT---F---------- 345 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh-cCcc---c----------
Confidence 44444456666666555555544444432 566777777667667777777777766543 1110 0
Q ss_pred CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CC-CCChhhHHHHHHHHH
Q 004269 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KT-PLGTPTYNTVLHSLV 520 (764)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~ 520 (764)
...|-.+...|+-.+.-+.|...+... .. +..-..+--+.--|.
T Consensus 346 ----------------------------------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 346 ----------------------------------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred ----------------------------------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 112223334444444444444443221 00 001111111223455
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHHhcCC
Q 004269 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD----G-FY-PQTMTYTALIKILLDYGD 594 (764)
Q Consensus 521 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~-p~~~~~~~li~~~~~~g~ 594 (764)
+.++.+-|.+.|.+..... +-|+..++-+--...+.+.+.+|..+|+..... + -+ .-..+++.|..+|.+.++
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 6677777777777665531 224455555555555567777777777665521 0 01 123456677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
.++|+..+++.+.. .+.|..++.++.-.|...|+++.|.+.|.+.+ .+.||..+...+++
T Consensus 471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 77777777777653 24466777777777777777777777777776 56777766666665
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=4.6e-08 Score=106.71 Aligned_cols=244 Identities=11% Similarity=-0.048 Sum_probs=177.9
Q ss_pred ChhhhHHHHHHHhc-----cCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHh---------hcChhHHHHHHHHHHh
Q 004269 157 ILPVYNSFLGACAK-----LHSMVHANLCLDLMDSRMVGKN-EVTYTELLKLAVW---------QKNLSAVHEIWEDYIK 221 (764)
Q Consensus 157 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 221 (764)
+...|...+++... .+++++|...|++..+. .|+ ...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34455566665321 24568999999998875 444 3445444444332 3447899999999999
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
..+.+..++..+..++...|++++|...|++..+ ..|+. ...|..+..
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~------------------------------~~a~~~lg~ 380 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPIS------------------------------ADIKYYYGW 380 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHH
Confidence 8889999999999999999999999999999998 56665 247888899
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
.+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++++.+...+-+...+..+..+|...|+.+
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999986 45432 333445556678999999999999887643324555677888899999999
Q ss_pred HHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHH
Q 004269 381 LAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSL 438 (764)
Q Consensus 381 ~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~--~~~p~~~t~~~ll~~ 438 (764)
+|...+..+.... +...++.+...|+..| ++|...++.+.+ ...|.......++.+
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~ 518 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLV 518 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHH
Confidence 9999999987653 3344566666777777 488887887776 444444444444433
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.02 E-value=1.6e-05 Score=83.96 Aligned_cols=305 Identities=12% Similarity=-0.003 Sum_probs=186.4
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc--
Q 004269 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-- 171 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-- 171 (764)
...+...|+++.|++.++.-... +.............|.+.|+.++|..++..+.+++ +.|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34556778888888888764443 44455566777888888888888888888887654 23333444455544222
Q ss_pred ---CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh-HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 172 ---HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 172 ---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
.+.+....+|+++...- |...+...+.-.+.....+. .+...+..+.+. .-+.+++.|-..|.......-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence 35677788888877653 43333322222222211221 222333333322 23345666666676555555555
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 327 (764)
.++....... ..+... . ..............+++.-+...|-..|++++|++++++..+. .|+
T Consensus 164 ~l~~~~~~~l-~~~~~~-------------~-~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt 226 (517)
T PF12569_consen 164 SLVEEYVNSL-ESNGSF-------------S-NGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPT 226 (517)
T ss_pred HHHHHHHHhh-cccCCC-------------C-CccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence 5555554421 111100 0 0000111111122356677778888888999999988888876 466
Q ss_pred c-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc--------c
Q 004269 328 S-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPK--------P 397 (764)
Q Consensus 328 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--------~ 397 (764)
. ..|..-.+.+-..|++.+|.+.++.....+.. |...-+..+..+.++|++++|.+++......+ ++. .
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 3 45666677788889999999888888888776 77788888888888899999888888887653 111 1
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 398 F--SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 398 ~--~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
| .....+|.+.|++..|+..|....+
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 3345667778888888877776543
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=3e-08 Score=92.28 Aligned_cols=226 Identities=9% Similarity=-0.052 Sum_probs=138.6
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+...|.+.|-+.+|...|+.-.+. .|-+.||..|-++|-+...+..|+.++.+-+.. .+-++....-+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 345566677777777777666554 366666766777777777777777777666654 23344444455666666677
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.++|.++++...+..+ .++.....+..+|.-.++.+-|+..|+++.+-|+. +...|+.+--+|.-.++++.+..-|.
T Consensus 306 ~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777776654432 24444555555666667777777777777777665 55556666556666666776666666
Q ss_pred HHHhc---CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhh
Q 004269 218 DYIKH---YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 218 ~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
+.... ...-..+|..+.......||+..|.+.|+-........ ..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h--------------------------------~e 430 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH--------------------------------GE 430 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch--------------------------------HH
Confidence 66543 22223456666666666677777766666655421111 13
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
++|.|.-.-.+.|++++|..++.....
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666666666666666666666666554
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=6.8e-05 Score=77.84 Aligned_cols=135 Identities=7% Similarity=-0.018 Sum_probs=84.4
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
+......+..|+.+++.+.... .-...|..+...|+..|+++.|.++|.+.. .++--|..|.++|+++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHH
Confidence 3344455666666766666543 233456677778888888888888886441 4566778888888888
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (764)
.|.++-++.. |+......|..-..-.-..|.+.+|+++|-.+. .|+ ..|.+|-+.|..+..+++.++
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 8887765543 344455556555555666777777777654331 222 234566666666666665544
No 76
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.5e-05 Score=83.92 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 589 (764)
..|+.+..+-.+.|...+|++-|-+. -|+..|.-+++.+.+.|.+++-..++....+..-.|.+. +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 47888888888888888888766432 367789999999999999999999999998887677665 4789999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004269 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 669 (764)
++.+++.+-++++. .||......+.+-|...|.++.|.-++... ..|..|...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 99999888776653 478888888888888888888777666543 34555555666666666665
Q ss_pred HH
Q 004269 670 EA 671 (764)
Q Consensus 670 ~~ 671 (764)
..
T Consensus 1241 D~ 1242 (1666)
T KOG0985|consen 1241 DA 1242 (1666)
T ss_pred HH
Confidence 43
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=9.9e-07 Score=92.84 Aligned_cols=293 Identities=12% Similarity=0.065 Sum_probs=210.1
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCCh-hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc-
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA-DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG- 135 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 135 (764)
....+...|++++|++.+.+-... -+|. ..+......+.+.|+.++|..+|..++..+ +.|..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 344578899999999999885543 2454 446677788889999999999999999997 44555666666666332
Q ss_pred ----CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH-HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh
Q 004269 136 ----GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV-HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 136 ----g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
.+.+....+++++.+.. |.......+.-.+.....+. .+...+..+..+|+++ +|+.|-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 35778888999886543 44444433433333333333 4445566677777553 5566666666565666
Q ss_pred HHHHHHHHHHhc---------------CCCCH--hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccc
Q 004269 211 AVHEIWEDYIKH---------------YSLSI--FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 211 ~a~~~~~~~~~~---------------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (764)
-..+++..+... .+|+. +++.-+...|...|+.++|+..+++..+ ..|+.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~----------- 227 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTL----------- 227 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCc-----------
Confidence 666666665532 12343 4556677788899999999999999988 45654
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 353 (764)
...|..-.+.+-+.|++++|.+.++..++.... |.+.-+-....+.+.|++++|.+++..
T Consensus 228 -------------------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 228 -------------------VELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 258888999999999999999999999987633 666777778888899999999999999
Q ss_pred HHHCCCCCCHHHH--------HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004269 354 MQQNNLKPQDSTI--------ATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 354 ~~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~~~~~~~ 392 (764)
..+.+..|-.... .....+|.+.|++..|++.|..+.+.
T Consensus 288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9887754433222 34567888999999998888777653
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.5e-05 Score=79.45 Aligned_cols=476 Identities=12% Similarity=0.024 Sum_probs=253.4
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH-
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC- 133 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~- 133 (764)
+..-+..+..++++++|.....++...+ +-+...+..-+-+..+.+.++.|..+.+.-.... ..+.+. .=.+||
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~ 89 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCE 89 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHH
Confidence 3344666778999999999999998876 5566678888888889999999885544322110 112222 234555
Q ss_pred -ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-hhcChhH
Q 004269 134 -KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV-WQKNLSA 211 (764)
Q Consensus 134 -~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~ 211 (764)
+.+..++|...++... + .+..+...=...+-+.|++++|+++|+.+.+.+.. .+...+.+-+ ..+-...
T Consensus 90 Yrlnk~Dealk~~~~~~-~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD-R----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHcccHHHHHHHHhccc-c----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhh
Confidence 6899999999988432 1 23335555666788899999999999999776432 2222222111 1111111
Q ss_pred HHHHHHHHHhcCCC-CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
+. +.+.....+. +-..+......++..|++..|+++++...+.+...-. .+. ...+....+
T Consensus 161 ~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~------~~d----------~~eEeie~e 222 (652)
T KOG2376|consen 161 VQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE------DED----------TNEEEIEEE 222 (652)
T ss_pred HH--HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc------ccc----------cchhhHHHH
Confidence 11 1111111222 2233334455678899999999999998543221100 000 000000011
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH---HHhcCChhH--HHHHHHHHHHCCCCCCHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA---IVSDRGLRN--GMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~--a~~~~~~~~~~~~~~~~~~ 365 (764)
+ ...---|..++-..|+.++|..+|....+.. .+|........+- +....++.+ ++..++.....
T Consensus 223 l-~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~-------- 292 (652)
T KOG2376|consen 223 L-NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK-------- 292 (652)
T ss_pred H-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH--------
Confidence 1 0122234556677899999999999988875 3455333222222 222222211 11111111100
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCC
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCTNPKPF-SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~ 444 (764)
..+.+...|..-.. ..+.. +.++..|.. ..+.+.++..... +..|. +.+.+++..+...
T Consensus 293 ------------l~~~~l~~Ls~~qk--~~i~~N~~lL~l~tn--k~~q~r~~~a~lp-~~~p~-~~~~~ll~~~t~~-- 352 (652)
T KOG2376|consen 293 ------------LAEFLLSKLSKKQK--QAIYRNNALLALFTN--KMDQVRELSASLP-GMSPE-SLFPILLQEATKV-- 352 (652)
T ss_pred ------------hHHHHHHHHHHHHH--HHHHHHHHHHHHHhh--hHHHHHHHHHhCC-ccCch-HHHHHHHHHHHHH--
Confidence 00111111111111 11111 233333332 2223333222211 22232 2333333322110
Q ss_pred chhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHh---cCCCCChhhHHHHHHHHHH
Q 004269 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVE 521 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~li~~~~~ 521 (764)
+......+.+++.. ..+....+.--.++.....
T Consensus 353 --------------------------------------------~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 353 --------------------------------------------REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred --------------------------------------------HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 00012222222222 1112223455556677778
Q ss_pred cCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCCHH----HHHHHHH
Q 004269 522 AQESHRAMEIFK--------QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTM----TYTALIK 587 (764)
Q Consensus 522 ~~~~~~A~~l~~--------~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~----~~~~li~ 587 (764)
.|+++.|++++. .+.+.+..|- +...+...+.+.++-+.|.+++....+. .-.+... ++.-+..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 899999988888 5555555554 4455666777888877777777766642 1112222 2333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
.=.+.|..++|..+++++.+.. ++|..+...++.+|++. +.+.|+.+-..+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 4467899999999999998643 67889999999999887 788888765544
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=7.6e-05 Score=78.62 Aligned_cols=517 Identities=11% Similarity=0.040 Sum_probs=242.2
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccC--------CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAH--------HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC 124 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 124 (764)
..|..+...|.+..+++-|.-.+-.|.... .+.+..+=..+.-.....|..++|..++.+-.+.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~-------- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY-------- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH--------
Confidence 456666666777777777666665554221 0011111112222223456677777777665543
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc----------CC-----
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR----------MV----- 189 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~----- 189 (764)
..|-..|-..|.|++|.++-+.- +.+... .+|..-..-+-..++.+.|++.|+..-.. .+
T Consensus 830 -DLlNKlyQs~g~w~eA~eiAE~~---DRiHLr-~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 -DLLNKLYQSQGMWSEAFEIAETK---DRIHLR-NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred -HHHHHHHHhcccHHHHHHHHhhc---cceehh-hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 23445566677777777765522 222221 24444444455566777777776542110 00
Q ss_pred ----CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhc
Q 004269 190 ----GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265 (764)
Q Consensus 190 ----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (764)
..|...|.---......|+.+.|+.+|+.. .-|-++++..|-.|+.++|-++-++-- |.
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~kAa~iA~esg------d~--- 967 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTDKAARIAEESG------DK--- 967 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHh--------hhhhhheeeEeeccCchHHHHHHHhcc------cH---
Confidence 011112222222222333344444333322 123344444444455555544432211 11
Q ss_pred ccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChh
Q 004269 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345 (764)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 345 (764)
.+.-.|.+.|-..|++.+|..+|.+.. ++...|+.| +.++++
T Consensus 968 ----------------------------AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc-KEnd~~ 1009 (1416)
T KOG3617|consen 968 ----------------------------AACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC-KENDMK 1009 (1416)
T ss_pred ----------------------------HHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH-HhcCHH
Confidence 244456666666677777777666554 233344433 222222
Q ss_pred HHHHHHHHH-------------HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------HhhC---C-CCccHH
Q 004269 346 NGMEVLKIM-------------QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---------ISRC---T-NPKPFS 399 (764)
Q Consensus 346 ~a~~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------~~~~---~-~~~~~~ 399 (764)
+-+.-+..| .+.|.. +...+..|-+.|.+.+|+++-=+ +.+. + |+...+
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 211111111 011111 12234456666666666554211 1110 0 333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCC-CCcc--
Q 004269 400 AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN-IQHS-- 476 (764)
Q Consensus 400 ~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 476 (764)
-...-|+...++++|..++-..++ |...++.|.+.+-.- . ..+-+.|.-.. -.|+
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~--------~~~AlqlC~~~nv~v-----------t---ee~aE~mTp~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE--------FSGALQLCKNRNVRV-----------T---EEFAELMTPTKDDMPNEQ 1142 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHhcCCCch-----------h---HHHHHhcCcCcCCCccHH
Confidence 444455666677777776665554 444555554443210 0 01111111111 1122
Q ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH-------------HHHHHhCCCC
Q 004269 477 --HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI-------------FKQMKTCGIP 541 (764)
Q Consensus 477 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l-------------~~~m~~~g~~ 541 (764)
..+...+.+.|.+.|.+..|-+-|-+.+.+. ..|.++.+.|+.++..-+ -+-++..+..
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl------~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq 1216 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL------SAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQ 1216 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH------HHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccc
Confidence 2344556777788888888888776665432 245666677766542111 0112222334
Q ss_pred CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 542 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
-|+.+...++.-|.+..-++.--.+|+....- .+..|-.+-.+ .|-+++|.+.+.+..+.. .....++.|-
T Consensus 1217 ~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq 1287 (1416)
T KOG3617|consen 1217 DNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTTGLDALQ 1287 (1416)
T ss_pred cChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHHHHHHHH
Confidence 45556666665555554444433333322221 11111111111 244566666666665432 1222333332
Q ss_pred HHHHH-----------cCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 004269 622 KKACE-----------KGRIDVIEFIIEQMHQNKVQP----DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 622 ~~~~~-----------~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
+-..+ ..|..+.+.-...|.+.-.-| -...|..||..+.+..+|..|-+.+++|..+.
T Consensus 1288 ~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1288 EDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 21111 124555555566666543333 34467778889999999999999999998754
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.93 E-value=6.8e-07 Score=92.79 Aligned_cols=245 Identities=18% Similarity=0.199 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C--CCc---cHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRC-----T--NPK---PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~---~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ 434 (764)
+...+...|...|+++.|+.++...... + ... ..+.+...|...+++++|..+|+++.. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~----------i 270 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT----------I 270 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------H
Confidence 3344555666666666666665554332 0 111 123455678888999999999988865 0
Q ss_pred HHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHH
Q 004269 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514 (764)
Q Consensus 435 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 514 (764)
....++. ..+.-..+++.|...|.+.|++++|...+
T Consensus 271 ~e~~~G~------------------------------~h~~va~~l~nLa~ly~~~GKf~EA~~~~-------------- 306 (508)
T KOG1840|consen 271 REEVFGE------------------------------DHPAVAATLNNLAVLYYKQGKFAEAEEYC-------------- 306 (508)
T ss_pred HHHhcCC------------------------------CCHHHHHHHHHHHHHHhccCChHHHHHHH--------------
Confidence 1111110 00111234455666777777777777655
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhhCChhHHHHHHHHHHHC---CCCCC----HHHHHHH
Q 004269 515 VLHSLVEAQESHRAMEIFKQMKTCGI-PPNAA-TYNIMIDCCSIIRCFKSASALVSMMVRD---GFYPQ----TMTYTAL 585 (764)
Q Consensus 515 li~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~p~----~~~~~~l 585 (764)
+.|++++++. .|. .|... -++.+...|...+.+++|..+++...+. -+.++ ..+++.|
T Consensus 307 -----------e~Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 307 -----------ERALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred -----------HHHHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 3455555551 121 22222 3455566677788888888887665542 12222 4678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLE----GIPHD---VLLYNTILKKACEKGRIDVIEFIIEQMHQN--KVQPD----PSTC 652 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~ 652 (764)
...|.+.|++++|.+++++.++. +.+.+ -..++.|...|.+.++.++|.++|.+...- -+.|+ ..+|
T Consensus 374 ~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~ 453 (508)
T KOG1840|consen 374 AELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY 453 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 99999999999999999988642 22222 346788888999999999898888876531 12233 3466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 004269 653 HFVFSGYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 653 ~~ll~~~~~~g~~~~a~~~~~~~~ 676 (764)
.-|...|.+.|++++|.++.+.+.
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 667889999999999999988775
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.91 E-value=5.1e-05 Score=78.75 Aligned_cols=192 Identities=12% Similarity=0.128 Sum_probs=108.5
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (764)
.+.+.|+++.|+.-|-+.. ...-.+.+......|.+|..+++.+..++.. ..-|..+.+-|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHH
Confidence 3445566666665554432 1223455666677888888888887776543 3446677788888888888
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHH
Q 004269 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461 (764)
Q Consensus 382 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (764)
|+++|.+.. .++-.|..|.+.|+++.|.++-.+... .......|.+--.-+-..|.+.++.+++-.++.
T Consensus 784 ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~~-~e~t~~~yiakaedldehgkf~eaeqlyiti~~---- 852 (1636)
T KOG3616|consen 784 AEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECHG-PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE---- 852 (1636)
T ss_pred HHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhcC-chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----
Confidence 888886543 356677888888888888887665432 222333343333333334444333333322221
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 004269 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533 (764)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~ 533 (764)
| ..-|.+|-+.|..++.+++.++.....-..+.-.+..-|-..|+...|..-|-
T Consensus 853 -------------p-----~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 853 -------------P-----DKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred -------------c-----hHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 1 12345666666666666666554222222233334444445555555555443
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.89 E-value=3.3e-05 Score=83.20 Aligned_cols=185 Identities=12% Similarity=-0.038 Sum_probs=138.8
Q ss_pred cchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004269 68 RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF 147 (764)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 147 (764)
...|+..|-+..+..+. =...|..|...|....|...|.+.|....+.+ ..+...+..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 56666665555444422 23358888888887778889999999999886 45777888999999999999999998655
Q ss_pred HhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCH
Q 004269 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227 (764)
Q Consensus 148 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 227 (764)
..++.....-...|--.--.|.+.++...|..-|+...+..+. |...|..+..+|...|.+..|.+.|.+...-.|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 5443322111222333334467789999999999998886544 788999999999999999999999988877666666
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...-.....-+..|...+|...+..+..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666666677888999999999988765
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.88 E-value=2.4e-07 Score=96.16 Aligned_cols=249 Identities=11% Similarity=0.002 Sum_probs=185.7
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhcccc--
Q 004269 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-- 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-- 81 (764)
|.....++.+...|...|+++.|. .++.... |..-.+.|+...........+...|...+++++|+.+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~-~l~k~Al--~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAE-PLCKQAL--RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHH-HHHHHHH--HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 555667888999999999999999 7766554 44445566655555555666777889999999999999998642
Q ss_pred ---C--CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc-----Cc-cccH-HHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 82 ---H--HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK-----EI-GLNN-KCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 82 ---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
| .+-...+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.+...|+..+.+++|..++....
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 2233456888888899999999988888776542 21 2232 256677788899999999999988654
Q ss_pred hhcC--CCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHhhc----CC--CC-ChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 150 ERYG--IYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSR----MV--GK-NEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 150 ~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+... ..++ ..+++.|...|-..|++.+|.++|+..... +- .+ ....++.+-..|.+.+..++|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 3221 1222 237899999999999999999999987653 11 22 2446777888899999999999888
Q ss_pred HHHHh---c----CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 217 EDYIK---H----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 217 ~~~~~---~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+... . .+....+|..|..+|...|+++.|.++.+.+..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 87753 1 233356899999999999999999999998875
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=0.00026 Score=74.68 Aligned_cols=503 Identities=12% Similarity=0.037 Sum_probs=291.4
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHH---HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA---LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
..++++.++.-+......+.+.++.++..+-.. |...|+.+++ .++..+.+ ..-|....+.+.+.-
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e--s~i~Re~~~d~ilsl-------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE--SLIPRENIEDAILSL-------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh--hccccccHHHHHHHH--------
Confidence 346666777777777777766666666555443 3445666666 33333322 222332333332221
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.-.+.+++...+..|...|..+.-+....|+++.+.+.|++.....-.....|+.+-..|...|..-.|..+++.-..
T Consensus 308 --m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 308 --MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred --HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 112344444456678888888888899999999999999999988777888999999999999999999999988766
Q ss_pred hhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH-ccCCHHHHHHHHHHHHH--CCC--CCCccc
Q 004269 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG-RTQNSGLAEQLMLQMQS--LGL--QPSSHT 330 (764)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~--~g~--~p~~~~ 330 (764)
....|+++ ..+-..-..|. +.+.+++++++-.+... .+. ......
T Consensus 386 ~~~~ps~~------------------------------s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 386 KSEQPSDI------------------------------SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred cccCCCcc------------------------------hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 33334431 12222223333 35667777777766665 111 123344
Q ss_pred HHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCc
Q 004269 331 YDGFIRAIVSD-----------RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396 (764)
Q Consensus 331 ~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~ 396 (764)
|..+--+|... ....++.+.+++..+.+.. |+.+.-.+.--|+..++++.|.+...+...-+ +..
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 55554444421 1235577778888776654 33443344556888899999999998887662 888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004269 397 PFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 397 ~~~~li~~~~~~~~~~~a~~l~~~m~~--~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
.|..|.-.+.-.+++.+|+.+.+.... |. |......-++--...++.+++. +......++++... |
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l------~t~~~~L~~we~~~--~-- 582 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEAL------DTCIHKLALWEAEY--G-- 582 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHH------HHHHHHHHHHHhhh--h--
Confidence 999999999999999999999887765 31 1000000000000112211111 11111111111000 0
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHhcCC----CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHH--
Q 004269 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKT----PLGT-PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP--PNAA-- 545 (764)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~--p~~~-- 545 (764)
....++-....+.+..+.. ..+. .++..+..- +. -+.+.+..-.. |...-.. |+..
T Consensus 583 ------------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 583 ------------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-VA-SQLKSAGSELK-LPSSTVLPGPDSLWY 647 (799)
T ss_pred ------------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-HH-hhhhhcccccc-cCcccccCCCCchHH
Confidence 0001111111222222111 1111 122222211 11 11111110000 2221122 2211
Q ss_pred ----HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004269 546 ----TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTI 620 (764)
Q Consensus 546 ----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l 620 (764)
.+......+.+.+..++|...+.+..+. .......|.-....+...|..++|.+.|..... +.| ++.+..++
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Al 724 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 2334445566777888888777776654 234556666666777888999999999988774 345 45678888
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 621 LKKACEKGRIDVIEF--IIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 621 i~~~~~~g~~~~a~~--~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
...+.+.|+...|.. ++..+.+ +.| +...|..+-..+-+.|+.+.|.+.|+.--.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 888889998877777 8888886 445 456777777788999999999998885433
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=9.3e-07 Score=88.07 Aligned_cols=225 Identities=10% Similarity=-0.092 Sum_probs=132.4
Q ss_pred hCCcchHHHHHHhccccCC-CC--ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004269 65 RGERSRASHLLLNLGHAHH-SL--GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
.+..+.++.-+..+..... .| ....|..+...+...|+.+.|...|++..+.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455666666666664321 11 12346666667777788888888888887764 44667888888888888888888
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
...|++..+.+ +.+...|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...++....
T Consensus 118 ~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888776532 2234566777777777888888888888877653 3332222222223445677788887766554
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
...++...+ .+...+ .|+...+ ..+..+.+.. ..+... ......+|..+..
T Consensus 194 ~~~~~~~~~-~~~~~~--lg~~~~~-~~~~~~~~~~-~~~~~l------------------------~~~~~ea~~~Lg~ 244 (296)
T PRK11189 194 KLDKEQWGW-NIVEFY--LGKISEE-TLMERLKAGA-TDNTEL------------------------AERLCETYFYLAK 244 (296)
T ss_pred hCCccccHH-HHHHHH--ccCCCHH-HHHHHHHhcC-CCcHHH------------------------HHHHHHHHHHHHH
Confidence 444443332 222222 3443333 2344443210 000000 0000146777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCC
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g 323 (764)
.+.+.|++++|+..|++..+.+
T Consensus 245 ~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 245 YYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC
Confidence 7778888888888887777653
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=1.3e-06 Score=86.99 Aligned_cols=201 Identities=9% Similarity=-0.025 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
|..+-..+...|+.+.|...|++..+..+.+..+|+.+...+...|+++.|...|+...+ +.|+.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~------------- 131 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTY------------- 131 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC-------------
Confidence 333444444555555555555555554455555555555555555555555555555554 33332
Q ss_pred ccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
..+|..+...+...|++++|++.|+...+. .|+..........+...++.++|...+....
T Consensus 132 -----------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 132 -----------------NYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred -----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 134445555555555555555555555543 2322211111111223445555555554433
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004269 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR 426 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~ 426 (764)
... .|+... ..+... ..|+...+ ..+..+.... ...+|..+...+.+.|++++|+..|++..+.-.
T Consensus 193 ~~~-~~~~~~-~~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWG-WNIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccH-HHHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 221 111111 112111 12332222 1222222100 234577778888888888888888888877334
Q ss_pred CCHHHHHHH
Q 004269 427 PDIRTYELL 435 (764)
Q Consensus 427 p~~~t~~~l 435 (764)
||.+-+...
T Consensus 268 ~~~~e~~~~ 276 (296)
T PRK11189 268 YNFVEHRYA 276 (296)
T ss_pred chHHHHHHH
Confidence 455555443
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=1.2e-06 Score=78.25 Aligned_cols=203 Identities=15% Similarity=-0.021 Sum_probs=171.8
Q ss_pred hhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHH
Q 004269 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 129 (764)
........+...|...|+...|..-+++.++.+ |-+..++..+...|-+.|+.+.|.+-|++..+.. +-+-.+.|...
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG 110 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhh
Confidence 334455566788999999999999999999887 4455678888889999999999999999999875 45677889999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcCh
Q 004269 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..+|..|.+++|...|++........--..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.+.....|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccc
Confidence 9999999999999999998764333333458888988999999999999999999886433 455777888889999999
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
-.|...++.......++..+.-..|..-...|+.+.+.+.=..+.+
T Consensus 190 ~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 190 APARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred hHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999988779999999999999999999999887777665
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5.8e-06 Score=76.39 Aligned_cols=317 Identities=14% Similarity=0.054 Sum_probs=211.6
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH-HHHHHHHcc
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL-LMMQALCKG 135 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~ 135 (764)
..+..+.+..++.+|++++..-.+.. +.+....+.+..+|-...++..|.+.++++-.. .|...-|. .-..++-+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34555678889999999999887765 336666777777888889999999999998776 45544443 235566788
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH--HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGA--CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
+.+..|.++...|.+. |+...-..-+.+ .-..+++..+..+.++....| +..+.+..-....+.|+++.|.
T Consensus 92 ~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 9999999999988642 222111111222 234688888888888876432 4555555555566899999999
Q ss_pred HHHHHHHhc-CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCC--ccccch
Q 004269 214 EIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN--ALPVMK 290 (764)
Q Consensus 214 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 290 (764)
+-|....+- .-....+||..+. ..+.|+.+.|++...++.++|++.....+.-+ . ....+..-..+ .+....
T Consensus 165 qkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm---~-tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGM---T-TEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccc---e-eccCchhcccchHHHHHHH
Confidence 999999873 3344556666554 44678999999999999999987654222110 0 00000000000 111111
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 369 (764)
+ ...+|.-...+.+.++++.|.+.+..|.-+. -..|++|...+.-.- -.+++.+..+-+.-+...++- ...|+..+
T Consensus 240 l-~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANl 316 (459)
T KOG4340|consen 240 L-VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANL 316 (459)
T ss_pred H-HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHH
Confidence 1 2455655666788999999999999987543 456788876653221 245566777777777777664 46788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 004269 370 SVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~~~~ 391 (764)
+-.||++.-++.|-+++.+-..
T Consensus 317 LllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcc
Confidence 9999999999999888776543
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=0.00035 Score=73.89 Aligned_cols=303 Identities=12% Similarity=0.012 Sum_probs=177.0
Q ss_pred HHHHHHHhhcccchhhhhcc--ccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh
Q 004269 11 QLIADSFCKSKFHKHERRNV--ANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 11 ~~~~~~~~~~g~~~~a~~~~--~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (764)
..++..+.++.|+|=|.-.+ .+.+...|.+....+ .|+...... ..-....|.+++|..+|++-...+
T Consensus 761 ~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e~eakv---AvLAieLgMlEeA~~lYr~ckR~D------ 830 (1416)
T KOG3617|consen 761 DNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEEDEAKV---AVLAIELGMLEEALILYRQCKRYD------ 830 (1416)
T ss_pred HHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcchhhHH---HHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 34666677777777666222 222323333333322 222211111 222456788999999998876643
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh----------hcC-----
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE----------RYG----- 153 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~----- 153 (764)
..|. .|-..|.+++|.++-+.--+-.. ..+|..-..-+-..++.+.|++.|++... .+.
T Consensus 831 LlNK---lyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 831 LLNK---LYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred HHHH---HHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 2333 34456889988887664333222 23555556666677888888888875311 000
Q ss_pred ---CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhH
Q 004269 154 ---IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 154 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
-..|...|..-..-+-..|+.+.|+.+|...++ |-++++..+-+|+.++|.++-++ ..|..+.
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAc 970 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAAC 970 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh-----cccHHHH
Confidence 011222333333333345888888888877665 56677777889999999888774 4677788
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC--
Q 004269 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN-- 308 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-- 308 (764)
..|.+.|-..|++.+|..+|.+.. +|...|+.|-.++-
T Consensus 971 YhlaR~YEn~g~v~~Av~FfTrAq----------------------------------------afsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 971 YHLARMYENDGDVVKAVKFFTRAQ----------------------------------------AFSNAIRLCKENDMKD 1010 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH----------------------------------------HHHHHHHHHHhcCHHH
Confidence 889999999999999999998875 33333433322222
Q ss_pred -------------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH--------HHHH--CCCCCCHHH
Q 004269 309 -------------SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK--------IMQQ--NNLKPQDST 365 (764)
Q Consensus 309 -------------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~--~~~~~~~~~ 365 (764)
.-.|-..|++.- . -+.-.+-.|-+.|.+.+|+++-- +++. .....|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 222333333321 1 11122334556666666665421 1122 234456677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004269 366 IATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~ 391 (764)
.+.-.+.++...++++|..++-...+
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77778888888888888877765543
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.5e-05 Score=74.02 Aligned_cols=272 Identities=11% Similarity=0.018 Sum_probs=189.7
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
++-|+.....+...+...|+.++|+-.|++..- +.|+.. ....-.-.+.+.|+++....+...+.... .-+..-|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 455777888888888888888888888887642 223322 11122223456677777777666655431 1123333
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
-.-.+..-..++++.|..+-++.++..+.+...+-.-..++...++++.|.-.|+.... +.|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~r-------------- 367 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYR-------------- 367 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhh--------------
Confidence 33334445677888888888888877777777777777788889999999999988876 55554
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHH-HHHH-hcCChhHHHHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI-RAIV-SDRGLRNGMEVLKIM 354 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~ 354 (764)
..+|.-|+.+|...|++.+|.-+-+..... ..-+..+.+.+- ..|. ....-++|..+++.-
T Consensus 368 ----------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 368 ----------------LEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred ----------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 269999999999999999998777665432 122444554442 2222 223457788888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 004269 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD 428 (764)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~ 428 (764)
.+..+. -....+.+...+...|..+++..+++...... |....+.|...+...+.+.+|++.|..... +.|+
T Consensus 431 L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-~dP~ 503 (564)
T KOG1174|consen 431 LKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR-QDPK 503 (564)
T ss_pred hccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cCcc
Confidence 765432 23456778888999999999999999877654 888899999999999999999999988776 3343
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=5.6e-06 Score=74.06 Aligned_cols=189 Identities=8% Similarity=-0.099 Sum_probs=94.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
|.-+|.+.|+...|..-++...+..+. +..+|..+-..|-+.|+.+.|.+.|+..++..+.+..+.|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 344455555555555555555443211 3334444444455555555555555555555555555555555555555666
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 323 (764)
++|...|++... .|.-+.. ..+|..+.-+..+.|+.+.|...|++-.+..
T Consensus 120 ~eA~q~F~~Al~---~P~Y~~~---------------------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 120 EEAMQQFERALA---DPAYGEP---------------------------SDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred HHHHHHHHHHHh---CCCCCCc---------------------------chhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 666665555554 2221100 1355555555556666666666665555532
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004269 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385 (764)
Q Consensus 324 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (764)
. -...+.-.+.....+.|++..|..+++.....+. ++..+.-..|..--+.|+.+.+.+.
T Consensus 170 p-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 170 P-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred c-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 1 1223444445555555566666655555555544 4444444444444455555444443
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=0.00064 Score=73.73 Aligned_cols=381 Identities=10% Similarity=0.014 Sum_probs=207.3
Q ss_pred hhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCC-CCC
Q 004269 8 TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH-SLG 86 (764)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 86 (764)
+.+..+...|+...++-.|. ..|+.+.+++|.. ...+-.....|++..+|+.|..+.-..-+... ..-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~----------kCf~KAFeLDatd-aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAK----------KCFDKAFELDATD-AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHhcCCchh-hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 44555555566655555555 5555556665553 33344456678888899988887333222210 111
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+....-.+...++...+..-|+...+.+ +.|...|..+..+|..+|.+..|.++|++... +.|+. .|...-.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~ 636 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKE 636 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHH
Confidence 1223334445667788888888888877765 45777899999999999999999999987743 33442 2332222
Q ss_pred --HHhccCCHHHHHHHHHHHhhc------CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH-------hcC-CCCHhhH
Q 004269 167 --ACAKLHSMVHANLCLDLMDSR------MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-------KHY-SLSIFSL 230 (764)
Q Consensus 167 --~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~-~~~~~~~ 230 (764)
..+..|.+.+|+..+...... +..--..++..+...+...|-...+...++.-. .+. ..+...|
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 345578888988888776542 111122233333333333443333433333332 221 3333334
Q ss_pred HHHHHHhhccCCHH--H----HHHHH-HHHHHhhccCcchhccc--ccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 231 RKFVWSFTRLRDLK--S----AYETL-QHMVALAMMGKLYINRT--SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 231 ~~li~~~~~~g~~~--~----A~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
-.+-++|.-.-..+ . -..+| .+....+.-++...... -|+....... ....+|..|..
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-------------~~~~~WyNLGi 783 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-------------IHMYPWYNLGI 783 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-------------hccchHHHHhH
Confidence 33333321111000 0 01111 11222222221100000 0110000000 00146666665
Q ss_pred HHHc-------cC-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 302 ACGR-------TQ-NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 302 ~~~~-------~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
.|.+ .+ +-..|+..+.+.++. ..|...+...+......|++.-+...|-.-...... ...+|..+...+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheeccceeE
Confidence 5543 11 224677777777654 334444444455556667888777777666555443 566777788888
Q ss_pred HhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 374 SKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAK 420 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~ 420 (764)
.+..+++.|...|....... +...|--........|+.-+++.+|..
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 88999999999999887653 566666555555667777778887776
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=3.7e-05 Score=79.80 Aligned_cols=260 Identities=9% Similarity=-0.053 Sum_probs=125.5
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHH---HHHHHhccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhhc
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNS---FLGACAKLHSMVHANLCLDLMDSRMVGKNE-VTYTELLKLAVWQK 207 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 207 (764)
+...|++++|.+++++..+.. +.+...+.. ........+....+.+.+.. .....|+. .....+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 345566666666666655432 222222221 11111123344444444433 11112222 22233334555666
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccc
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
++++|.+.++...+..+.+...+..+..++...|++++|...+++..+....+..
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------------------------- 183 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM------------------------- 183 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc-------------------------
Confidence 6777777777666666666666677777777777777777777766652111110
Q ss_pred cchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCcccH-H--HHHHHHHhcCChhHHHHH--HHHH-HHCCC-
Q 004269 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPSSHTY-D--GFIRAIVSDRGLRNGMEV--LKIM-QQNNL- 359 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~~~~-~~~~~- 359 (764)
.....|..+...+...|++++|..+|++...... .+..... + .++.-+...|....+.+. .... .....
T Consensus 184 ---~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~ 260 (355)
T cd05804 184 ---LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD 260 (355)
T ss_pred ---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc
Confidence 0002444566677777777777777777653221 1111111 1 122222233333322222 1111 11100
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---------ccHHHHH--HHHHhcCCHHHHHHHHHHHhc
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNP---------KPFSAFL--AACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~li--~~~~~~~~~~~a~~l~~~m~~ 423 (764)
............++...|+.+.|..+++.+...... .+-..++ -++...|++++|.+++.....
T Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 261 HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001111124555667777788888777776542100 1111222 335678888888888877654
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=2.4e-05 Score=81.21 Aligned_cols=310 Identities=9% Similarity=-0.028 Sum_probs=182.0
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchh---hhhhhHHHHHHHHHhhCCcchHHHHHHhccc
Q 004269 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEE---SISKATQMQIVDALCRGERSRASHLLLNLGH 80 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~---~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~ 80 (764)
|+-...+..+...+...|+.+++. ..+.+. ....|. +....+ .....+...|++++|.++++....
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~e~~~-~~a~~~~~~g~~~~A~~~~~~~l~ 71 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAA-AKAAAA---------AQALAARATERERAH-VEALSAWIAGDLPKALALLEQLLD 71 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHH-HHHHHH---------HHHhccCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777887888888888875 222222 211121 111122 223446678999999999999887
Q ss_pred cCCCCChhcHHH---HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC
Q 004269 81 AHHSLGADDFFH---ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157 (764)
Q Consensus 81 ~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 157 (764)
.. |.+...+.. ........+....+.+.+.. .....+........+...+...|++++|...+++..+.. +.+
T Consensus 72 ~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~ 147 (355)
T cd05804 72 DY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDD 147 (355)
T ss_pred HC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC
Confidence 65 334433331 12222224555555555554 111222234455566678889999999999999987643 345
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CCh--hhHHHHHHHHHhhcChhHHHHHHHHHHhcCC--CCHhhH-H
Q 004269 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNE--VTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LSIFSL-R 231 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-~ 231 (764)
...+..+..++...|++++|...++........ |+. ..|..+...+...|++++|..+++......+ +..... +
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 567888888999999999999999988765322 232 2345677788899999999999999864322 222211 1
Q ss_pred --HHHHHhhccCCHHHHHHHHHHHHHhhc-c-CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC
Q 004269 232 --KFVWSFTRLRDLKSAYETLQHMVALAM-M-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 232 --~li~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 307 (764)
.++.-+...|....+.++ +.+..... . +.. .. .........++...|
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~-~~---------------------------~~~~~~~a~~~~~~~ 278 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDH-GL---------------------------AFNDLHAALALAGAG 278 (355)
T ss_pred HHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcc-cc---------------------------hHHHHHHHHHHhcCC
Confidence 333334444443333333 22221100 0 110 00 012235677788899
Q ss_pred CHHHHHHHHHHHHHCCCCC--C----cccHHHHHHH--HHhcCChhHHHHHHHHHHHC
Q 004269 308 NSGLAEQLMLQMQSLGLQP--S----SHTYDGFIRA--IVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~g~~p--~----~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~ 357 (764)
+.+.|..+++.+......+ . ..+-..++.+ +...|+.+.|.+.+......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999887633221 0 0111222332 34677888888877776543
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.1e-08 Score=59.99 Aligned_cols=32 Identities=38% Similarity=0.572 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004269 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 574 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=2.6e-06 Score=83.49 Aligned_cols=253 Identities=14% Similarity=0.070 Sum_probs=167.1
Q ss_pred HHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH
Q 004269 13 IADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92 (764)
Q Consensus 13 ~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (764)
-+..+.-.|.+..++ ..+. +.+..|+........+.+++...|+.+.++. ++.... +|.......
T Consensus 7 ~vrn~fy~G~Y~~~i----------~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~ 71 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCI----------NEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRL 71 (290)
T ss_dssp HHHHHHCTT-HHHHC----------HHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHH
T ss_pred HHHHHHHhhhHHHHH----------HHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHH
Confidence 345566778888887 2222 1233444445555566888999998776554 333333 466656655
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCcc-ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEKEIG-LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
+...+....+-+.+..-++........ .+..........+...|++++|+++++.. .+.......+..|.+.
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~ 144 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKM 144 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHT
T ss_pred HHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHc
Confidence 555555444555555555544433333 34444444556677899999999988643 2456677788999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
++++.|.+.++.|.+. . +..+...+..++.. ...+..|.-+|+++...+++++.+.+.+..++...|++++|.
T Consensus 145 ~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp T-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred CCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999875 3 33444455554433 346899999999999889999999999999999999999999
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCH-HHHHHHHHHHHHC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS-GLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~ 322 (764)
+++.+..+ ..|+.+ .+...++-+....|+. +.+.+.+.++...
T Consensus 222 ~~L~~al~--~~~~~~------------------------------d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 222 ELLEEALE--KDPNDP------------------------------DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCC--C-CCHH------------------------------HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHH--hccCCH------------------------------HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99998765 334431 3566677777777777 6777888888764
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=3.2e-06 Score=82.89 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 004269 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL-DLAEA 384 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~ 384 (764)
.+.+..|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+....+.. +..+...++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHH
Confidence 34566677777776543 3455556666666666667777777666666555433 445555555555555554 44555
Q ss_pred HHHHHhh
Q 004269 385 LLDQISR 391 (764)
Q Consensus 385 ~~~~~~~ 391 (764)
.+.++..
T Consensus 258 ~l~qL~~ 264 (290)
T PF04733_consen 258 YLSQLKQ 264 (290)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 5555553
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.4e-07 Score=58.03 Aligned_cols=32 Identities=34% Similarity=0.654 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004269 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 609 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00057 Score=63.61 Aligned_cols=348 Identities=11% Similarity=0.068 Sum_probs=178.3
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
+++++..+.+..+++.|.+++....+..+.+....+.|..+|....++..|-..++++.. ..|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~------------- 77 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPEL------------- 77 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHH-------------
Confidence 334444444555555555555544444444555555555666666666666666666654 22221
Q ss_pred ccCCCccCCccccchhhhhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH--HhcCChhHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFS-DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI--VSDRGLRNGMEVLK 352 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~ 352 (764)
.-|. --..++-+.+.+..|+.+...|... |+...-..-+.+. ...+++..+..+.+
T Consensus 78 ------------------~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 78 ------------------EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred ------------------HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 1111 1123444556666777777666542 2222111112222 24567777777766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCC
Q 004269 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPD 428 (764)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~ 428 (764)
+....| +..+.+.......+.|+.+.|.+-|+...+-+ ....||..+ ++.+.+++..|++...++.+ |++-.
T Consensus 137 Qlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 137 QLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred hccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcC
Confidence 654332 33444444445567788888888887776544 445565444 45566888888888888877 65422
Q ss_pred HHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC--
Q 004269 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP-- 506 (764)
Q Consensus 429 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 506 (764)
+..- .|...+..+ ...++.... |...++ ...+|.-...+.+.++.+.|.+.+-+|.++
T Consensus 213 PElg---------IGm~tegiD-vrsvgNt~~-------lh~Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 213 PELG---------IGMTTEGID-VRSVGNTLV-------LHQSAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred CccC---------ccceeccCc-hhcccchHH-------HHHHHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 2110 000000000 000000000 000000 122333444567788999999988887443
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC-CCCHHHHH
Q 004269 507 --LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYT 583 (764)
Q Consensus 507 --~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~ 583 (764)
.|.+|...+.-. -..+++.+..+-+.-+...+. --..||..++-.||+..-++.|-.++.+-...-+ -.+...|+
T Consensus 273 ~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~ 350 (459)
T KOG4340|consen 273 EELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD 350 (459)
T ss_pred ccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH
Confidence 344443332111 123445455554555555432 3457888888899998888888888755332211 12444455
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHH
Q 004269 584 ALIKILL-DYGDFDEALNLLDLVS 606 (764)
Q Consensus 584 ~li~~~~-~~g~~~~A~~~~~~m~ 606 (764)
. ++++. ..-..++|++-++.+.
T Consensus 351 L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 351 L-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred H-HHHHHhCCCCHHHHHHHHHHHH
Confidence 3 33333 3345667766655543
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.52 E-value=0.00012 Score=69.36 Aligned_cols=305 Identities=12% Similarity=0.026 Sum_probs=194.0
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHH---HHhhCCCChhHHHHHHHHHHHcCccccHH-HHHHHHHHH
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHIL---NYCARSPDPLFVMETWRMMEEKEIGLNNK-CYLLMMQAL 132 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~ 132 (764)
.+...+..+|++..|+..|....+. |+..|.++. ..|...|+...|+.=+++.++. .||-. ....-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3466778889999999998888764 444454444 4666778888888888888876 46643 223345567
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
.++|.++.|..=|+.+.+.+ |+. +....++.+.--.++-.. ....+..+...||...|
T Consensus 117 lK~Gele~A~~DF~~vl~~~---~s~---~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE---PSN---GLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC---CCc---chhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence 88999999999998887542 321 122222222111111111 12233345556777777
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
+.....+++-.+.|...|..-..+|...|++..|+.=+....+ +..+.
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~Dn------------------------------ 222 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASK--LSQDN------------------------------ 222 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccc------------------------------
Confidence 7777777777777777777777778888887777766666555 22222
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc----HHHH---------HHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT----YDGF---------IRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
+..+--+-..+..-|+.+.++...++-++. .||... |..| +......++|.++.+-.+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 124444445555667777777766666653 455432 1111 1223456777778877777777665
Q ss_pred CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 360 KPQDSTIA---TLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 360 ~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
......++ .+-.++...|++.+|++...++.... |+.++.--..+|.-...++.|+.-|+...+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 53344443 45566777788999998888887653 455666667788888889999998888876
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=1.3e-05 Score=81.34 Aligned_cols=222 Identities=9% Similarity=0.007 Sum_probs=169.0
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+.++|++.+|.-.|+.....+ |-+...|..|....+.+++=..|+..+.+-++.+ +-|....-.|...|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 455778999999999999988776 5567788888888888888888999999888886 55777888888899999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHH-----------HHHhccCCHHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHhh
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFL-----------GACAKLHSMVHANLCLDLMDS-RMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~ 206 (764)
..|.+.|+...... | .|..+. +.+.....+....++|-++.. .+..+|......|--.|--.
T Consensus 370 ~~Al~~L~~Wi~~~---p---~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK---P---KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHhC---c---cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999888775321 0 111111 122223334555666655544 34446777777777778889
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
|++++|...|+..+...|.|...||.|...++...+.++|+..|.+..+ ++|.-
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~y------------------------ 497 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGY------------------------ 497 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCe------------------------
Confidence 9999999999999988888999999999999999999999999999988 77764
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
+.++..|.-+|...|.+++|.+.|-..+
T Consensus 498 ------VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 498 ------VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ------eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 1355567777888999999988887654
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2.4e-05 Score=79.49 Aligned_cols=222 Identities=9% Similarity=-0.042 Sum_probs=170.9
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
-+.+.|++..|.-+|+..++.+ +-+...|..|..+.+..++-..|+..+.+..+-+ +-|....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3457889999999999998886 5578899999999999999999999999887543 345667778888899999999
Q ss_pred HHHHHHHHHhhcCCC--------CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC--CCHhhHHHHHHHhhccCCHHH
Q 004269 176 HANLCLDLMDSRMVG--------KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 245 (764)
.|++.|+......++ ++...-.. +.+.....+....++|-.+....+ .|+.++..|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887554211 00000000 122333344566677777766544 899999999999999999999
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 325 (764)
|...|+.... ++|++ ...||-|-..++...+.++|+..|++.++. +
T Consensus 449 aiDcf~~AL~--v~Pnd------------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--q 494 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPND------------------------------YLLWNRLGATLANGNRSEEAISAYNRALQL--Q 494 (579)
T ss_pred HHHHHHHHHh--cCCch------------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhc--C
Confidence 9999999998 78887 369999999999999999999999999984 6
Q ss_pred CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 326 PSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 326 p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
|+-+ ....|--.|...|.+++|...|-..+.
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 7643 334455568899999999988876554
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.0003 Score=83.17 Aligned_cols=338 Identities=10% Similarity=-0.064 Sum_probs=211.3
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC--c----ccc--HHHHHHHHH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--I----GLN--NKCYLLMMQ 130 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~----~~~--~~~~~~li~ 130 (764)
.......|+++.+...++.+.......++.........+...|+++.+..+++.....- . .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 34455678888887877776432212223333344445556789999998888775431 0 111 112223334
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC---ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc----CC-CCChhhHHHHHHH
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYP---ILPVYNSFLGACAKLHSMVHANLCLDLMDSR----MV-GKNEVTYTELLKL 202 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~ 202 (764)
.+...|++++|...+++..+...... .....+.+...+...|++++|...+++.... |. .+...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 55678999999999998754211111 1124455666778899999999999887643 11 1112344555667
Q ss_pred HHhhcChhHHHHHHHHHHhc----CCC----CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccc
Q 004269 203 AVWQKNLSAVHEIWEDYIKH----YSL----SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (764)
+...|+++.|...+++.... ..+ ....+..+...+...|+++.|...+.+...........
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----------- 609 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ----------- 609 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-----------
Confidence 78899999999998887652 111 23345556667778899999999998876531111000
Q ss_pred cccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CcccH-----HHHHHHHHhcCChhHHH
Q 004269 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP-SSHTY-----DGFIRAIVSDRGLRNGM 348 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~~~~~~a~ 348 (764)
.....+..+...+...|+++.|...+.+........ ....+ ...+..+...|+.+.|.
T Consensus 610 ----------------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 610 ----------------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 001356667778889999999999998885421111 11111 11123345578899999
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 349 EVLKIMQQNNLKPQD---STIATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
..+............ .....+...+...|+.++|...+++..... ...+...+..++.+.|+.++|...
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 674 NWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887775542221111 113456677888999999999998876531 122445566778899999999999
Q ss_pred HHHHhc
Q 004269 418 FAKMRQ 423 (764)
Q Consensus 418 ~~~m~~ 423 (764)
+.+..+
T Consensus 754 L~~Al~ 759 (903)
T PRK04841 754 LLEALK 759 (903)
T ss_pred HHHHHH
Confidence 999877
No 104
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=0.0019 Score=63.23 Aligned_cols=289 Identities=13% Similarity=0.057 Sum_probs=169.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004269 306 TQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (764)
.++...|...+--+.... ++-|+.....+.+.+...|+.++|...|+.....++- +..........+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 444444444444333332 3334556666777777777777777777776654321 11112223333455666666666
Q ss_pred HHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHH
Q 004269 385 LLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462 (764)
Q Consensus 385 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (764)
+...+-... +...|-.-........+++.|+.+-++-.+ +.|+.+- .+
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-~~~r~~~--al--------------------------- 337 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID-SEPRNHE--AL--------------------------- 337 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-cCcccch--HH---------------------------
Confidence 655554331 233344434444555666667666665544 1121111 11
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004269 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
-.--..+...++.++|.-.|+.. ..+-+..+|..++..|...|++.+|.-+-++..+. +
T Consensus 338 ------------------ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 338 ------------------ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred ------------------HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 11112344556777777777653 22345678888888888888888888776664443 2
Q ss_pred CCCHHHHHHHH-HHHH-hhCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 541 PPNAATYNIMI-DCCS-IIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 541 ~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
..+..+.+.+- ..|. ....-++|..+++.-.+. .|+ ....+.+...+...|+.+.+..++++... ..||....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH 474 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLH 474 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHH
Confidence 33444444331 2222 223346778887776663 454 33456677777888888888888888773 47888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+.|.+.+...+.+++|.+.|...+. +.|+..
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 8888888888888888888888774 556543
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.0014 Score=66.62 Aligned_cols=160 Identities=12% Similarity=0.039 Sum_probs=93.1
Q ss_pred HHHHHhcCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhCChh
Q 004269 484 LKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFK 561 (764)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~ 561 (764)
-.+|.+.++++.+...|.+... ..+. ....+....++++.......-. .|.... .-.--+.+.+.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 3456666777777777766311 1110 1122333445555554444332 233311 111134566778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004269 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 562 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
.|...|.++++.. +-|...|..-.-+|.+.|.+.+|++=.+...+. .|+ ...|.-=..++....+++.|.+.|++.
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888875 446778888888888888888888877776643 333 223333333444455678888888887
Q ss_pred HHCCCCCCHHHHHHHHH
Q 004269 641 HQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 641 ~~~~~~p~~~~~~~ll~ 657 (764)
++ ..|+..-+..-+.
T Consensus 453 le--~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 453 LE--LDPSNAEAIDGYR 467 (539)
T ss_pred Hh--cCchhHHHHHHHH
Confidence 75 3465554443343
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.0022 Score=65.23 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=72.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004269 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGD 594 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~ 594 (764)
.+.+.+.|++..|+..|.+++... +-|...|+.-.-+|.+.|.+..|+.=-+...+. .|+ ...|.-=..++.-..+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999886 446778888888999999999998887777765 233 2233322333334457
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
++.|++.|++..+. .|+..-+..-+.-|..
T Consensus 442 ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888887644 3544444444444444
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.42 E-value=0.0032 Score=63.90 Aligned_cols=162 Identities=12% Similarity=0.147 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
.+|...|+.-.+..-.+.|..+|.+..+.+..+ +...+++++.-+| .++.+-|.++|+.=.+. +.-++.--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 467777777777788888888888888887777 6667777777666 47788888888765543 22344444677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcC
Q 004269 589 LLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCG 663 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g 663 (764)
+...++-..|..+|++....++.||. .+|..+|.-=..-|+...+.++-+++... ...|....-..+++-|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 88888888888888888877666653 57888888888888888888888777652 12222233344555555555
Q ss_pred ChHHHHHHHH
Q 004269 664 FHNSAMEALQ 673 (764)
Q Consensus 664 ~~~~a~~~~~ 673 (764)
++..-..-++
T Consensus 525 ~~~c~~~elk 534 (656)
T KOG1914|consen 525 LYPCSLDELK 534 (656)
T ss_pred cccccHHHHH
Confidence 5444333333
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=0.0014 Score=77.56 Aligned_cols=344 Identities=13% Similarity=-0.001 Sum_probs=200.4
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
........+...|++.+|...+....... .-..............|++..+...++.+.......++.........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 33344455666777777776655543211 1111122222333445777776666665532211122223334444556
Q ss_pred ccCCHHHHHHHHHHHhhhcCC-----CCCh--hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh----hhHHHHHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGI-----YPIL--PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELLKL 202 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~-----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~ 202 (764)
..|++++|..+++...+...- .+.. .....+...+...|++++|...++.....-...+. .+.+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 789999999999876432111 1111 12222334456789999999999987763112221 234445556
Q ss_pred HHhhcChhHHHHHHHHHHhc---C-CC--CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 203 AVWQKNLSAVHEIWEDYIKH---Y-SL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~---~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
+...|+++.|...++..... . .+ ...++..+...+...|+++.|...+++.....-.....
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------- 567 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE------------- 567 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-------------
Confidence 67899999999999888752 1 11 13455666778889999999999998876631110000
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCC--cccHHHHHHHHHhcCChhHHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPS--SHTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
........+..+...+...|++++|...+.+..... ..+. ..++..+.......|+.+.|...+.
T Consensus 568 -----------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 568 -----------QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred -----------cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000001244556667778899999999998876531 1122 2234445556678899999999988
Q ss_pred HHHHCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc------HHHHHHHHHhcCCHHHHHHHHHH
Q 004269 353 IMQQNN--LKPQDS--T-I-ATLSVECSKALELDLAEALLDQISRCTNPKP------FSAFLAACDTMDKPERAIKIFAK 420 (764)
Q Consensus 353 ~~~~~~--~~~~~~--~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~li~~~~~~~~~~~a~~l~~~ 420 (764)
...... ...... . . ...+..+...|+.+.|...+........... +..+..++...|++++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 875421 111110 1 1 1123445668899999999877654321111 34566678888999999988887
Q ss_pred Hhc
Q 004269 421 MRQ 423 (764)
Q Consensus 421 m~~ 423 (764)
...
T Consensus 717 al~ 719 (903)
T PRK04841 717 LNE 719 (903)
T ss_pred HHH
Confidence 765
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.37 E-value=0.00015 Score=81.01 Aligned_cols=203 Identities=11% Similarity=0.046 Sum_probs=104.1
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHc-Cccc---cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEK-EIGL---NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
...|...+......++.+.|+++.++.+.. ++.- -.-.|.++++.--..|.-+...++|++..+-- ..-..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHH
Confidence 334555555555555666666666655542 1111 11234444444444455555556666554310 1123455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHHHhhcc
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRL 240 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 240 (764)
.|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++.+.++..|- ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5556666666666666666666554 2234445555555555555555666666555554333 333444455555556
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
|+.+.+..+|+.......+-. ..|+..|+.-.++|+.+.+..+|++..
T Consensus 1614 GDaeRGRtlfEgll~ayPKRt--------------------------------DlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRT--------------------------------DLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred CCchhhHHHHHHHHhhCccch--------------------------------hHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666666665554211111 256666666666666666666666665
Q ss_pred HCCCC
Q 004269 321 SLGLQ 325 (764)
Q Consensus 321 ~~g~~ 325 (764)
..++.
T Consensus 1662 ~l~l~ 1666 (1710)
T KOG1070|consen 1662 ELKLS 1666 (1710)
T ss_pred hcCCC
Confidence 55443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=0.00031 Score=78.66 Aligned_cols=225 Identities=9% Similarity=0.015 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhhhHHHHHHHhccCCHHHHHH
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI---LPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 179 (764)
++.|.++ ++..... +.+...|-..+......++.++|++++++....-+++-. ...|.++++.-...|.-+...+
T Consensus 1441 pesaeDf-erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDF-ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHH-HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3344444 3333332 456678999999999999999999999998753222111 2378888888888899999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
+|++..+.- ---..|..|...|.+.+..++|.++++.|.+.+.....+|...+..+.+..+-+.|..++.+..+. -
T Consensus 1519 VFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1519 VFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 999998852 123467788888999999999999999999988888889999999999999999999999988872 2
Q ss_pred CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004269 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339 (764)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 339 (764)
|. ++. .....-.+..-.+.|+.+.+..+|+..+.... --...|+..+..-.
T Consensus 1595 Pk---------------------------~eH-v~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1595 PK---------------------------QEH-VEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEI 1645 (1710)
T ss_pred ch---------------------------hhh-HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHH
Confidence 21 111 02333344445678888999999988887532 24557888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC
Q 004269 340 SDRGLRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~ 362 (764)
+.|+.+.++.+|++....++.|-
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCCChh
Confidence 88999999999999988887763
No 111
>PLN02789 farnesyltranstransferase
Probab=98.33 E-value=0.0005 Score=68.51 Aligned_cols=168 Identities=7% Similarity=-0.036 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC--hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN--LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
++++++..++.+....++ +..+|+.--..+.+.+. .+.+..+++.+.+..+-+..+|+....++...|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345555555555544322 22233333222333333 245566666666666777777777777777778888888888
Q ss_pred HHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc---CC----HHHHHHHHHHHHHCC
Q 004269 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT---QN----SGLAEQLMLQMQSLG 323 (764)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~~~m~~~g 323 (764)
+++.+.+...+. +|+.....+.+. |. .+..++...++....
T Consensus 166 ~~~I~~d~~N~s--------------------------------AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 166 HQLLEEDVRNNS--------------------------------AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHHHHHCCCchh--------------------------------HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 888774444332 666555444333 22 245666776666653
Q ss_pred CCCCcccHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 324 LQPSSHTYDGFIRAIVSD----RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 324 ~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (764)
+-|...|+.+...+... +...+|.+.+.+..+.++. +...+..|++.|+.
T Consensus 214 -P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 214 -PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred -CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 23556777777777662 3345577777776665443 55667778877775
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.32 E-value=6.7e-05 Score=72.54 Aligned_cols=189 Identities=11% Similarity=-0.019 Sum_probs=123.6
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hh
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PV 160 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~ 160 (764)
.....+..+...+...|+++.|...++++.... +.+. ..+..+..+|...|++++|...++.+.+..+-.|.. ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445567777777888888999999988887763 2222 456677788888899999999998887654322221 13
Q ss_pred hHHHHHHHhcc--------CCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHH
Q 004269 161 YNSFLGACAKL--------HSMVHANLCLDLMDSRMVGKNEV-TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 161 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
+..+..++.+. |+.+.|.+.|+.+... .|+.. .+..+.......+.. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRL-----------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 44445555543 6778888888888765 33332 222221111000000 00112
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 311 (764)
.+...|.+.|+++.|...++...+. .|+.+.. ...+..+..++...|++++
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~---------------------------~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN--YPDTPAT---------------------------EEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH--CCCCcch---------------------------HHHHHHHHHHHHHcCCHHH
Confidence 4556788999999999999999873 3322100 1488899999999999999
Q ss_pred HHHHHHHHHHC
Q 004269 312 AEQLMLQMQSL 322 (764)
Q Consensus 312 a~~~~~~m~~~ 322 (764)
|...++.+...
T Consensus 222 A~~~~~~l~~~ 232 (235)
T TIGR03302 222 AQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHhh
Confidence 99999988765
No 113
>PLN02789 farnesyltranstransferase
Probab=98.28 E-value=0.00066 Score=67.64 Aligned_cols=205 Identities=8% Similarity=-0.075 Sum_probs=128.4
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MV 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~ 175 (764)
..+..+.|+.+.+++++.. +-+..+|+..-.++...| ++++++..++++.+.+ +.+..+|+.--..+.+.|+ .+
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhH
Confidence 4456667777777776653 233445555544555555 5677777777776543 2333455544444444444 25
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc---CC----HHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---RD----LKSAYE 248 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~ 248 (764)
+++..++.+.+...+ +..+|+....++...|+++++.+.++++++..+.+..+|+....++.+. |. .+.+..
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 667777777765433 6667777777777777888888888888877777777777766665544 22 245666
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCC
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----QNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~ 324 (764)
...++.+ ..|+. ..+|+-+...+... ++..+|.+.+.+....+
T Consensus 205 y~~~aI~--~~P~N------------------------------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~- 251 (320)
T PLN02789 205 YTIDAIL--ANPRN------------------------------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD- 251 (320)
T ss_pred HHHHHHH--hCCCC------------------------------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-
Confidence 6666666 45544 15888888877763 34466888888876643
Q ss_pred CCCcccHHHHHHHHHh
Q 004269 325 QPSSHTYDGFIRAIVS 340 (764)
Q Consensus 325 ~p~~~~~~~ll~~~~~ 340 (764)
..+...+..|+..++.
T Consensus 252 ~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 252 SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 2255667777777764
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.26 E-value=0.012 Score=63.68 Aligned_cols=528 Identities=12% Similarity=0.040 Sum_probs=266.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
|-.....+++..|+....++.+.. |+. .|..++.++. +.|..++|..+++.....+.. |..+...+-..|-..|
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence 455677889999999999988764 333 4666666655 779999999888887776644 8889999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC--------
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-------- 208 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------- 208 (764)
+.++|..++++..++ .|+......+..+|+|.+++.+-.++--+|-+. ++...+.+=++++.....-.
T Consensus 92 ~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999998765 467777778888999988876544443333332 33355555555555443211
Q ss_pred --hhHHHHHHHHHHhcC--CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCC
Q 004269 209 --LSAVHEIWEDYIKHY--SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 209 --~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
+..|.+..+.+.+.. ..+..-.-.....+...|+.++|..++..-......+-.
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~---------------------- 225 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN---------------------- 225 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc----------------------
Confidence 224555555555422 112222222334455778889998888433221121111
Q ss_pred ccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH----HHh------------cCChhHHH
Q 004269 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA----IVS------------DRGLRNGM 348 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~----~~~------------~~~~~~a~ 348 (764)
...-+--+.-+...+++.+..++-.++...| +|. |...+.. .-. .+..+...
T Consensus 226 --------~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ 293 (932)
T KOG2053|consen 226 --------LYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECI 293 (932)
T ss_pred --------hHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHH
Confidence 0233445566777788888888888888775 232 2222221 111 11122222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHH-HHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 004269 349 EVLKIMQQNNLKPQDSTIATLSVECS---KALELDLAEAL-LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK 424 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~ 424 (764)
+...+...... ...|-+=+.++. .-|+.+++... |+..-. -..|..=+..|...=..+.-..++.....
T Consensus 294 ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~---kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~- 366 (932)
T KOG2053|consen 294 EKAQKNIGSKS---RGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD---KPCCAIDLNHYLGHLNIDQLKSLMSKLVL- 366 (932)
T ss_pred HHHHHhhcccc---cCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC---CcHhHhhHHHhhccCCHHHHHHHHHHhhc-
Confidence 22222222211 112222222222 33666664433 333332 22222222333322222332333322222
Q ss_pred CCCCHH---------HHHHHH-HHhcCCCCchhhchhhhhhhhHHHHHHHHH-H-HHHCCCCccH---------HHHHHH
Q 004269 425 LRPDIR---------TYELLF-SLFGNVNAPYEEGNMFSQVDSAKRINAIEM-D-MARNNIQHSH---------ISMKNL 483 (764)
Q Consensus 425 ~~p~~~---------t~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---------~~~~~l 483 (764)
..++.. +.+..+ ..++..-... +.. ......+....++ . -...++-|+. -+.+.|
T Consensus 367 ~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~-ad~---i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~L 442 (932)
T KOG2053|consen 367 ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP-ADS---ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHL 442 (932)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhccccCC-hHH---HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHH
Confidence 111111 111111 1111100000 000 0000001000000 0 1112223332 233568
Q ss_pred HHHHHhcCcHH---HHHHHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 004269 484 LKALGAEGMIR---ELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 484 ~~~~~~~~~~~---~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 558 (764)
++.+.+.++.. +|+-+++.. ..+-|..+--.+|..|+-.|-+..|.++|+.|--..|.-|..-|.. ..-+...|
T Consensus 443 id~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g 521 (932)
T KOG2053|consen 443 IDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSG 521 (932)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcc
Confidence 88888888766 455555442 2223344445678888888999999999999877777777665533 33445566
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004269 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL---LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~---~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
++..+...++...+.--.--..+-..+..+| +.|.+....++ =+++..+--+--..+-+..++..+..++.+.-..
T Consensus 522 ~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~ 600 (932)
T KOG2053|consen 522 RSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLK 600 (932)
T ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 7666666665544320000011112233333 33444333332 2333211111122234555666666677766666
Q ss_pred HHHHHH
Q 004269 636 IIEQMH 641 (764)
Q Consensus 636 ~~~~m~ 641 (764)
.++.|.
T Consensus 601 ~~~~~~ 606 (932)
T KOG2053|consen 601 LLESMK 606 (932)
T ss_pred HHhccc
Confidence 666655
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.00015 Score=75.95 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=175.3
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHH
Q 004269 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
+|-...-..+...+...|-..+|..+|++... |..++-+|...|+..+|..+..+..+ .+||+..|-.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 34334445677778888999999999987653 56678888899999999998888877 788999999998
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHH
Q 004269 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 314 (764)
+.....--+++|.++++....+ +-..+......+++++++.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------------------------------------A~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------------------------------------AQRSLALLILSNKDFSEADK 506 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------------------------------------HHHhhccccccchhHHHHHH
Confidence 8888877888888888876552 11112222334788999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 004269 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT- 393 (764)
Q Consensus 315 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 393 (764)
.|+.-.+.+ ..-..+|-.+-.+..+.++++.+.+.|.......+. +...+|.+-.+|.+.|+-.+|...+.+..+..
T Consensus 507 hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 507 HLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 998877643 223456666666777889999999999888775433 45679999999999999999999999988765
Q ss_pred -CCccHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCHHHHHHHHH
Q 004269 394 -NPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFS 437 (764)
Q Consensus 394 -~~~~~~~li~~~~~~~~~~~a~~l~~~m~~--~~~p~~~t~~~ll~ 437 (764)
+...|...+....+-|.+++|++.+.++.. ....|......++.
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 666788888889999999999999999877 22235544444443
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.24 E-value=0.0084 Score=61.04 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004269 525 SHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP-QTMTYTALIKILLDYGDFDEALNLL 602 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 602 (764)
.+...+.+++....- +.| ..+|...++...+..-++.|..+|.++.+.+..+ .+.++++++.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 455666666665542 333 3567888888888899999999999999998777 88889999988876 6789999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+--... +..++.--...++-+...++-..|..+|++....++.|| ..+|..+|.-=+.-|+.+.+.++-+++..
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 875532 344555667788888899999999999999998867665 46899999888899999999988776654
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=9.6e-05 Score=77.31 Aligned_cols=214 Identities=10% Similarity=0.028 Sum_probs=114.6
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004269 91 FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 170 (764)
..+...+...|-..+|..++++.. .|.-+|..|+..|+.++|..+..+-.++ +|+...|-.+.+..-.
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccC
Confidence 334445555556666666665442 3445555566666666666655544432 3555555555555555
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
.--+++|.++++....+ +-..+-....+.++++++.+.|+.-.+..+....+|-.+..++.+.+++..|.+.|
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 55556666665543322 11111111223455666666666555555555566666666666666666666666
Q ss_pred HHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004269 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 330 (764)
..... ..|+. ..+||++-.+|.+.++-.+|...+.+..+.+. -+-..
T Consensus 543 ~rcvt--L~Pd~------------------------------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~i 589 (777)
T KOG1128|consen 543 HRCVT--LEPDN------------------------------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQI 589 (777)
T ss_pred HHHhh--cCCCc------------------------------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCee
Confidence 66555 44544 24666666666666666666666666665542 23333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 331 YDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 331 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
|-.-+....+.|.+++|.+.+..+..
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHH
Confidence 33334445566666666666655543
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.00039 Score=77.29 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=85.8
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN-KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++...+..+ . ++
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------~l 90 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N----------------LI 90 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h----------------hh
Confidence 344666666666666777777776655544 2322 2222222244445554444333 1 22
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.......++.-...+...|... .-+...+..+..+|.+.|+.+++.++|+++++-.+.|+.+.|.+...|... ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 2222233333333333333332 123346666777788888888888888888887788888888888888888 8888
Q ss_pred HHHHHHHHHH
Q 004269 246 AYETLQHMVA 255 (764)
Q Consensus 246 A~~~~~~~~~ 255 (764)
|..++.+..+
T Consensus 168 A~~m~~KAV~ 177 (906)
T PRK14720 168 AITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHH
Confidence 8877777665
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.13 E-value=0.00037 Score=67.31 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 619 TILKKACEKGRIDVIEFIIEQMHQNKV-QP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
.+...+.+.|++++|+..+++..+..- .| ....+..+..++...|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345567888999999999999886421 12 2456777788999999999999998877653
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.025 Score=61.40 Aligned_cols=222 Identities=12% Similarity=0.028 Sum_probs=108.6
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH--HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA--CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
..+++..|....+.+..+. |+. .|...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...+++++
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3445555555555554443 221 22223332 23445555555555554443333 55555555555555566666
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|..+|++..+.+|. ......+..+|.+.+.+.+-.++=-++-+ ..|..+ .
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~---------------------------y 145 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRA---------------------------Y 145 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCccc---------------------------c
Confidence 66666555554443 44444445555555544333222222222 112110 0
Q ss_pred hhhhHHHHHHHHHccC-C---------HHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhcCChhHHHHHHH-HHHHCCC
Q 004269 292 LRWSFSDVIHACGRTQ-N---------SGLAEQLMLQMQSLGLQP-SSHTYDGFIRAIVSDRGLRNGMEVLK-IMQQNNL 359 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~-~---------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~ 359 (764)
..| ++++.+.+.. . ...|.+.++.+.+.+-+. +..-...-+..+...|.+++|.+++. ...+.-.
T Consensus 146 --yfW-sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~ 222 (932)
T KOG2053|consen 146 --YFW-SVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT 222 (932)
T ss_pred --hHH-HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence 122 2222222211 1 123455555555543111 11111122233446788999999883 3333334
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 393 (764)
.-+...-+.-++.+...+++.+..++-.++...+
T Consensus 223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4455555677788888899888888888877764
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=6.2e-06 Score=51.78 Aligned_cols=33 Identities=42% Similarity=0.728 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~ 543 (764)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0011 Score=60.50 Aligned_cols=157 Identities=11% Similarity=0.012 Sum_probs=117.8
Q ss_pred CChhHHHHHHHHHHH---cC-ccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 101 PDPLFVMETWRMMEE---KE-IGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 101 ~~~~~a~~~~~~m~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
.++++..++++.+.. .| ..++.+ .|..++-+....|+.+.|...++++..+++-.+.+.-...+. +-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchh
Confidence 567777788877764 23 445554 567777788889999999999999876653333333222221 33468999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+|+++|+.+.+.. +.|.+++-.=+...-..|.--.|.+-+....+.+..|..+|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998876 346777776666666778777888888888888999999999999999999999999999999876
Q ss_pred hhccCcc
Q 004269 256 LAMMGKL 262 (764)
Q Consensus 256 ~~~~~~~ 262 (764)
+.|..
T Consensus 183 --~~P~n 187 (289)
T KOG3060|consen 183 --IQPFN 187 (289)
T ss_pred --cCCCc
Confidence 55554
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00034 Score=64.44 Aligned_cols=57 Identities=7% Similarity=0.011 Sum_probs=25.3
Q ss_pred HHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 199 LLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+.....|++..|...+.+.....++|..+|+.+.-+|.+.|+++.|..-|.+..+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.02 E-value=0.001 Score=61.59 Aligned_cols=119 Identities=8% Similarity=-0.004 Sum_probs=65.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH-hhccCC--HHHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRD--LKSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~ 247 (764)
.++.+++...++...+..+ .|...|..+...|...|+++.|...++...+..+.+...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4444555555555444332 2455555555556666666666666666555555555555555554 344454 36666
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
+++++..+ ..|+. ..++..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~--~dP~~------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALA--LDANE------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHH--hCCCC------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666665 33333 135555666666666666666666666554
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.0013 Score=60.70 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 004269 481 KNLLKALGAEGMIRELIQYFCDSKT--PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 558 (764)
..+-..+.-.|+-+....+..+... ..|....+..+....+.|++.+|+..|.+..... ++|..+++.+--+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3344445555555555555544322 2233344445666666666666666666665543 455566666666666666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004269 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 638 (764)
+.+.|..-|.+..+.- .-++..+|.|...|.-.|+.+.|..++......+ .-|..+-..|.-.....|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6666666666666541 1234445555556666666666666666665443 2245555555555666666666666554
Q ss_pred H
Q 004269 639 Q 639 (764)
Q Consensus 639 ~ 639 (764)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.02 E-value=0.00054 Score=63.37 Aligned_cols=157 Identities=10% Similarity=-0.023 Sum_probs=115.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..|...|+++.+..-.+.+.. +. ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567788888876444322211 10 01223566777888888877775 66888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHH-hccCC--HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGAC-AKLHS--MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
++|...|++..... +.+...+..+..++ .+.|+ .++|.+++++..+..+. +..++..+...+...|++++|...
T Consensus 90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999887543 33556777777764 66676 59999999999887544 667778888888899999999999
Q ss_pred HHHHHhcCCCCHhhHH
Q 004269 216 WEDYIKHYSLSIFSLR 231 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (764)
|+.+.+..+|+..-+.
T Consensus 167 ~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 167 WQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHhhCCCCccHHH
Confidence 9999988777765543
No 127
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=9.5e-06 Score=50.93 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=28.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 328 (764)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7888888888888888888888888888888873
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.0013 Score=72.66 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=151.3
Q ss_pred cHHHHHHHHHHHHccCCHHHH-HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEA-SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
++...+.+=.+.+.-|..++| .+++.+..+ ++....+-....+++.-+....+. ...+...+..|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L 92 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLV 92 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHH
Confidence 555556666667777777777 445554431 333333333333333222222222 34467788888
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCC
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
.......|.+++|..+++.+.+..|.+......+..++.+.+++++|...+++... ..|+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~----------------- 153 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSS----------------- 153 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCC-----------------
Confidence 88888899999999999999888888888999999999999999999999998887 45554
Q ss_pred CccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
....+.+..++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.-
T Consensus 154 -------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~- 218 (694)
T PRK15179 154 -------------AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI- 218 (694)
T ss_pred -------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-
Confidence 2477788888889999999999999998743 2235678888888888999999999999888753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 393 (764)
.+....|+.++ +++..-..+++.+...+
T Consensus 219 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 219 GDGARKLTRRL------VDLNADLAALRRLGVEG 246 (694)
T ss_pred CcchHHHHHHH------HHHHHHHHHHHHcCccc
Confidence 22344444433 34455556666665443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.00 E-value=0.0027 Score=70.16 Aligned_cols=209 Identities=9% Similarity=-0.053 Sum_probs=149.1
Q ss_pred HHhhCCCChhHH-HHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004269 95 NYCARSPDPLFV-METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 95 ~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
.+.+..|..++| ++++.+.. .++...+......++.--+..... ..+.+...+-.|.....+.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~~~g~ 101 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVR--RYPHTELFQVLVARALEAAHR 101 (694)
T ss_pred HHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHH--hccccHHHHHHHHHHHHHcCC
Confidence 345556666654 45555443 223333333333333332222222 224457788899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHH
Q 004269 174 MVHANLCLDLMDSRMVGKNE-VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (764)
+++|+.+++...+. .||. .....+...+.+.+.+++|....++.....+.+......+..++...|++++|..+|++
T Consensus 102 ~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 102 SDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred cHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999985 5554 46677778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHH
Q 004269 253 MVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332 (764)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 332 (764)
+.. ..|+. ..++..+...+...|+.++|...|++..+.. .|-...|+
T Consensus 180 ~~~--~~p~~------------------------------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 180 LSR--QHPEF------------------------------ENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred HHh--cCCCc------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 997 33332 1588899999999999999999999998752 33444454
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 004269 333 GFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 333 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 358 (764)
..+ +++..-..+++.+.-.+
T Consensus 227 ~~~------~~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 227 RRL------VDLNADLAALRRLGVEG 246 (694)
T ss_pred HHH------HHHHHHHHHHHHcCccc
Confidence 443 23444445555554433
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.98 E-value=0.018 Score=55.20 Aligned_cols=201 Identities=14% Similarity=0.039 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
...+-+.+...|++..|+.-|...+++.+.+-.++-.-...|...|+...|+.=|....+ ++|+-.-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~----------- 107 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMA----------- 107 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHH-----------
Confidence 344555566667777777777777666666666666666777777777777777777776 5555310
Q ss_pred ccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc----------------HHHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT----------------YDGFIRAIV 339 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----------------~~~ll~~~~ 339 (764)
+----...+.+.|.++.|..=|+..++.. |+..+ ....+..+.
T Consensus 108 -------------------ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~ 166 (504)
T KOG0624|consen 108 -------------------ARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSAS 166 (504)
T ss_pred -------------------HHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 00011234567788888888888777653 22111 122334455
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
..|+...|......+++..+ .|...+..-..+|...|++..|+.=+....+.. ++..+--+-..+-.-|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 66788888888887777543 255666677778888888888877666665443 444455555566667777777666
Q ss_pred HHHHhccCCCCHHHH
Q 004269 418 FAKMRQKLRPDIRTY 432 (764)
Q Consensus 418 ~~~m~~~~~p~~~t~ 432 (764)
.++-.+ +.||....
T Consensus 246 iRECLK-ldpdHK~C 259 (504)
T KOG0624|consen 246 IRECLK-LDPDHKLC 259 (504)
T ss_pred HHHHHc-cCcchhhH
Confidence 665554 55665443
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.4e-05 Score=49.76 Aligned_cols=33 Identities=33% Similarity=0.665 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p 542 (764)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.96 E-value=0.0057 Score=61.72 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=95.3
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
.+...|+.+.|+..++.+.. ..|+. .+.+......+...++.++|.+.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N------------------------------~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDN------------------------------PYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCChHHHHHH
Confidence 34456777777777777665 44544 14556666777777777777777
Q ss_pred HHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 004269 316 MLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394 (764)
Q Consensus 316 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 394 (764)
++.+... .|+.. ..-.+-.++.+.|++.+|..+++........ |+..|..|..+|...|+..++.....
T Consensus 363 ~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------- 432 (484)
T COG4783 363 LKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------- 432 (484)
T ss_pred HHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH-------
Confidence 7777764 45532 3334456677777777777777777766544 67777777777777777666654433
Q ss_pred CccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHH
Q 004269 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431 (764)
Q Consensus 395 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t 431 (764)
.+|...|+++.|...+....+.++++..+
T Consensus 433 --------E~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 433 --------EGYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred --------HHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 34556777777777777776633444433
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.0021 Score=71.64 Aligned_cols=234 Identities=9% Similarity=-0.065 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
...+..++..+...+++++|+++.+...+.. |+... |-.+.-.+.+.++...+.-+ .++.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 4556667777778888888888888666543 33332 22222244444443333222 2233
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
......++.-+..+.+.|.+ . .-+...+-.+..+|-+.|+.++|..+++++.+..+ -|..+.|.+-..+... +++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHH
Confidence 33333333222223333321 1 12223444555555555555555555555555442 2444555555555555 555
Q ss_pred HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcc---cccccccccccCCCccCCccc
Q 004269 211 AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINR---TSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 287 (764)
+|.+++.+.++ .|....++..+..++.++.+.....-+.... .+.+....
T Consensus 167 KA~~m~~KAV~--------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~------------- 219 (906)
T PRK14720 167 KAITYLKKAIY--------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF------------- 219 (906)
T ss_pred HHHHHHHHHHH--------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc-------------
Confidence 55555554432 2344444555555555554421111110000 00000000
Q ss_pred cchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004269 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 339 (764)
.+- ..++-.+-..|-..++++++..+++...+..-. |..+..-++..|.
T Consensus 220 ~~~--~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRL--VGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred chh--HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 000 136666667777888888888888888875422 4455555655554
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0096 Score=55.11 Aligned_cols=185 Identities=14% Similarity=0.083 Sum_probs=119.8
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhH-HHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLF-VMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
+.++|...|.+...+.- +.... .+....+..+-......++.+. .-++.+.+.......+......-...|+..|
T Consensus 47 ~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~ 122 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDG 122 (299)
T ss_pred HHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC
Confidence 34667777776554432 22222 2333333333333333333333 3455556655555555455555566789999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----hcChhHH
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAV 212 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a 212 (764)
++++|.+..+... +......=+..+.+..+++-|.+.++.|.+. -+..|.+.|..++.+ .+.+..|
T Consensus 123 ~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 123 DFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred ChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 9999999887531 2233333445567788899999999999874 266677767666654 3457777
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 256 (764)
.-+|+++....+|++.+.+....++...|++++|..+++....+
T Consensus 193 fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 193 FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888763
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=0.014 Score=59.04 Aligned_cols=202 Identities=12% Similarity=0.002 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHhhhcCC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 138 LEEASNLIYFLGERYGI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+.++++.-+.++...+. .|+...+...+.+......-..+..++. +... ..-...-|...+. +...|.++.|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~~-~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRALQ-TYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHHH-HHHhcccchHHHHH
Confidence 44444444555332221 3444455555554443322222222222 2222 1223334444444 45689999999999
Q ss_pred HHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhH
Q 004269 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
..+.+..|.|++.+......+.+.++..+|.+.++.+.. ..|+.+ ..+
T Consensus 330 ~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~------------------------------~l~ 377 (484)
T COG4783 330 QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSP------------------------------LLQ 377 (484)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCcc------------------------------HHH
Confidence 999999999999999999999999999999999999988 667652 577
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 297 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
-.+..++.+.|++.+|+.+++...... +-|...|..|-.+|...|+..++..-..+ .|...
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~ 438 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALA 438 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhC
Confidence 788899999999999999999988764 45788999999999999998887665544 45667
Q ss_pred CCHHHHHHHHHHHhhCC
Q 004269 377 LELDLAEALLDQISRCT 393 (764)
Q Consensus 377 g~~~~a~~~~~~~~~~~ 393 (764)
|+++.|...+....+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 88888888888877653
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2.1e-05 Score=48.92 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 326 (764)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 137
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.89 E-value=0.00043 Score=60.42 Aligned_cols=103 Identities=10% Similarity=-0.175 Sum_probs=61.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+...+...|++++|...|+.....+ +.+...|..+..++.+.|++++|...|+......+ .+..++..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 44555666666666666666665332 33445666666666666666666666666665432 2555566666666666
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHH
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
|++++|...|+...+..+.+...+..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 66666666666666655555554443
No 138
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.87 E-value=0.00054 Score=59.77 Aligned_cols=101 Identities=8% Similarity=-0.121 Sum_probs=59.6
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004269 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628 (764)
Q Consensus 549 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 628 (764)
....++...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++..... +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445556666666666666666543 2245555666666666666666666666666432 335556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH
Q 004269 629 RIDVIEFIIEQMHQNKVQPDPSTCH 653 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~~~~p~~~~~~ 653 (764)
+.++|+..|++.++ ..|+...+.
T Consensus 107 ~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHH--hCCCChHHH
Confidence 66666666666664 445544443
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0028 Score=58.47 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=101.9
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 004269 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543 (764)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~ 543 (764)
+.+.+.......+......-...|.+.|++++|++..... ...+....+ +..+.+..+.+-|.+.+++|++- -+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-ENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 3334444444444444444455677788888888777652 222222222 33445666777777778887763 36
Q ss_pred HHHHHHHHHHHHhh----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004269 544 AATYNIMIDCCSII----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619 (764)
Q Consensus 544 ~~t~~~ll~~~~~~----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 619 (764)
..|.+.|..++.+. +.+..|.-+|++|-++ ..|+..+.+....++...|++++|..+++..+... ..++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 66776666666543 4566777777777654 45777777777777777777777777777777543 335556555
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHH
Q 004269 620 ILKKACEKGRI-DVIEFIIEQMH 641 (764)
Q Consensus 620 li~~~~~~g~~-~~a~~~~~~m~ 641 (764)
+|-.-...|.. +-..+.+.+++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHH
Confidence 55555555543 33445555555
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.73 E-value=0.00071 Score=58.66 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=55.8
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 167 (764)
.....+...+...|+++.|.+.++.....+ +.+...+..+...|...|++++|..+|++..+.. +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 334444555555666666666666665543 3355566666666666666666666666654321 2334455555556
Q ss_pred HhccCCHHHHHHHHHHHhhc
Q 004269 168 CAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665553
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.73 E-value=0.0019 Score=55.97 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=44.4
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 550 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
+...+...|++++|...|+.+.+.+ +.+...|..+...+.+.|++++|..++++....+ +.+...+..+...+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3344444555555555555554432 2234444445555555555555555555544332 2234444444455555555
Q ss_pred HHHHHHHHHHHHH
Q 004269 630 IDVIEFIIEQMHQ 642 (764)
Q Consensus 630 ~~~a~~~~~~m~~ 642 (764)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.72 E-value=0.00088 Score=68.13 Aligned_cols=124 Identities=9% Similarity=-0.018 Sum_probs=97.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC
Q 004269 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
.+|+..+...++++.|..+|+++.+.. |+ ....+.+.+...++-.+|.+++.+.++..+.|..........+.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 345555566788888888888888764 44 33456777777777788888888888777778788888888888999
Q ss_pred CHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
+.+.|+++.+++.+ ..|+.+ .+|..|..+|.+.|+++.|+..++.+.-
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f------------------------------~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEF------------------------------ETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhH------------------------------HHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999988 666662 5899999999999999999988887763
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00075 Score=53.40 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHhhCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 554 CSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIKILLDYG--------DFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 624 (764)
|...+++.....+|+.+.+.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444444444444444 444455554444444321 2233444455555555555555555555444
Q ss_pred H
Q 004269 625 C 625 (764)
Q Consensus 625 ~ 625 (764)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 3
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=5e-05 Score=45.94 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777664
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.001 Score=67.70 Aligned_cols=127 Identities=15% Similarity=0.057 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
.....|+..+...++++.|+.+|+++.+.+ |+ ....|++.+...++-.+|.+++++.....+ -+......-.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344566677777899999999999997653 55 455688888888999999999999887532 356666666677
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+.+.++.+.|..+.+++.+..|.+..+|..|..+|...|+++.|+-.++.++-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88999999999999999998888899999999999999999999999998874
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.00068 Score=53.64 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhC--------ChhHHHHHHHHHHHCCCCCCHHH
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPNAATYNIMIDCCSIIR--------CFKSASALVSMMVRDGFYPQTMT 581 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~p~~~~ 581 (764)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556677777999999999999999999 999999999999987653 34568899999999999999999
Q ss_pred HHHHHHHHHhc
Q 004269 582 YTALIKILLDY 592 (764)
Q Consensus 582 ~~~li~~~~~~ 592 (764)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00093 Score=68.22 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=100.6
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
..+.+......+++.+....+++.+..++-+.... |+.. ....++..++|+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s---~~~~--------------------------~~~~~t~ha~vR 111 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHS---PNCS--------------------------YLLPSTHHALVR 111 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcC---cccc--------------------------cccCccHHHHHH
Confidence 35667777778888888888889999888888763 2210 000147789999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
.|.+.|..+.++.+++.=...|+-||.++++.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 112 ~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 112 QCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999888776777766555545444
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.0011 Score=67.62 Aligned_cols=113 Identities=20% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004269 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 618 (764)
+.+......+++.+....+++.+..++..+... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555555433 111122233355555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004269 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 653 (764)
.|++.+.+.|++..|.++...|...+...+..|+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 55555555555555555555555444444444443
No 149
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.077 Score=52.89 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
+.+..|.-+...|+...|.++-++.. -|+..-|...+.+++..+++++-..+-.. +-++..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666677777777777766553 46777777788888888888776654322 224466777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004269 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 639 (764)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777762 1 13445566777777777665444
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.0023 Score=56.04 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh--hhHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE--VTYTELL 200 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll 200 (764)
.|..++..+ ..++...+...++.+...++-.+ .....-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 24555555555555543321100 0111222334445555555555555555554322211 1223344
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (764)
..+...|++++|...++.. .........+....++|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555666555555442 12223344555566667777777777776664
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.018 Score=52.93 Aligned_cols=187 Identities=9% Similarity=-0.029 Sum_probs=138.5
Q ss_pred hCCcchHHHHHHhcccc---C-CCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004269 65 RGERSRASHLLLNLGHA---H-HSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
..++++.++++.++... + ..++..+ |..++-+....+....|..+++.+...= +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45678888888777632 2 2344433 5555556667788999999999987763 333333222222355679999
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHH
Q 004269 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 140 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
+|+++++.+.+.+ +.|.+++-.=+...-..|+--+|++-+....+. +..|...|..+-..|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998755 556777776666666677777888888777766 5569999999999999999999999999999
Q ss_pred HhcCCCCHhhHHHHHHHhhccC---CHHHHHHHHHHHHH
Q 004269 220 IKHYSLSIFSLRKFVWSFTRLR---DLKSAYETLQHMVA 255 (764)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~ 255 (764)
+=..|.++..+..+...+.-.| +...|.+.|.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8877888888888877766555 56778899998887
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=8.5e-05 Score=44.90 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=23.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 324 (764)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 788888888888888888888888887663
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.53 E-value=0.0013 Score=64.79 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
.+|..+++..-+.+..+.|+.+|.+..+...+..++....+++.-+ ..++.+.|.++|+...+. +..+...|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566666666666667777777777764333333333333333322 245556677777776654 34455666666666
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCH---hhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSI---FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+...++.+.|..+|+..+...+++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777777776544433 5777777777788888888888888776
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.53 E-value=0.0046 Score=54.19 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=57.5
Q ss_pred hCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 004269 557 IRCFKSASALVSMMVRDGFYP--QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTILKKACEKGRIDV 632 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~ 632 (764)
.++...+...++.+.+....- .....-.+...+...|++++|...|+........|+ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555666666655542111 012222344555666666666666666665431111 1233345555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004269 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
|+..++...... .....+...-.+|.+.|++++|...|+
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666665532211 122222233336666677777666665
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.0065 Score=60.17 Aligned_cols=119 Identities=9% Similarity=-0.015 Sum_probs=72.2
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhcccccccccccccC
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (764)
+..|...|++..|-.++..+ ...|-.. |+++.|.+.|++..+.-...+....
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~------------- 153 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS------------- 153 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH-------------
T ss_pred HHHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh-------------
Confidence 34566777777766666554 4467677 8899999988888763222221100
Q ss_pred CCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-----c-cHHHHHHHHHhcCChhHHHHHHH
Q 004269 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-----H-TYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~-~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
...++..+...+.+.|++++|.++|++........+. . .|-..+-.+...||...|...++
T Consensus 154 -------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 154 -------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp -------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0146777888899999999999999998765332221 1 12223334556788888888888
Q ss_pred HHHHCC
Q 004269 353 IMQQNN 358 (764)
Q Consensus 353 ~~~~~~ 358 (764)
......
T Consensus 221 ~~~~~~ 226 (282)
T PF14938_consen 221 RYCSQD 226 (282)
T ss_dssp HHGTTS
T ss_pred HHHhhC
Confidence 887653
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.43 E-value=0.0041 Score=52.38 Aligned_cols=105 Identities=11% Similarity=-0.047 Sum_probs=50.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHH
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK--NEVTYTELLK 201 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~ 201 (764)
+-.+...+.+.|++++|.+.|+.+.+..+-.+ ....+..+..++.+.|+++.|...|+.+....+.. ...++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444455555666666666655543321101 11234445555555566666666665555432111 1233444444
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhh
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFS 229 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (764)
++...|+.+.|.+.++.+.+..+.+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 5555555555555555555544444443
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.12 Score=54.46 Aligned_cols=108 Identities=8% Similarity=0.022 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
.+|+.+...++....|+.|.+.|..-.. . ...+.++.....+++-..+-..+ +-+....-.+.+++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHH
Confidence 4677777777777777777777765331 1 12345555555555544443332 22445555667777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004269 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m 421 (764)
.+.|.-++|.+.|-+.... .+.+..|...+++.+|.++-+..
T Consensus 863 ~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777666655444332 24455666666666666665543
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.34 E-value=0.0033 Score=61.91 Aligned_cols=132 Identities=9% Similarity=0.008 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcH--HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDF--FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
..|...+....+.+..+.|..+|.+....+ ..+...| .+++..+ ..++.+.|..+|+...+. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 345566777777788899999999887543 2333344 3344333 246777799999988876 4667778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
.+...|+.+.|+.+|++.....+-.. ....|...+..=.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88889999999999998875422222 2347888888888888888888888888774
No 159
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.41 Score=51.37 Aligned_cols=158 Identities=9% Similarity=0.005 Sum_probs=74.7
Q ss_pred HHHhhCCcchHHHHHHhcc--------ccCCCCChhcHHHH-----HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004269 61 DALCRGERSRASHLLLNLG--------HAHHSLGADDFFHI-----LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
++.+..++++-+++.+.+. .-|++.+..-|.++ +.-+...+.+..|+++-..+...-... ..+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 3344455555555544432 33555555555444 333334456666766666554322111 455556
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCC-CChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC----CChhhHHHHHHH
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIY-PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG----KNEVTYTELLKL 202 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~ 202 (764)
....+.+..+..+ ..+++.+.++.+.+ -...+|..+.+..-..|+.+-|..+++.=.+.+-. .+..-+...++-
T Consensus 477 Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 477 WARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHHhccCccc-hHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 6665655432211 22333333332221 12345666666666677777777766542222111 122233444445
Q ss_pred HHhhcChhHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~ 220 (764)
+...||.+....++-++.
T Consensus 556 aies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHhcCCchhHHHHHHHHH
Confidence 555555555555544443
No 160
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.21 E-value=0.3 Score=49.06 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623 (764)
Q Consensus 545 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 623 (764)
..|...+++..+...++.|..+|-++.+.| +.+++.++++++..++. |+..-|.++|+--... ++.+..--+-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 346667777777788899999999999888 67888899999987765 6778888888865432 23344444556677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 624 ACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+..-++-+.|..+|+...++ +..+ ..+|..+|.-=+.-|+...|..+=+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77888989999999966542 2333 56788888877888998888877776654
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.19 E-value=0.00074 Score=52.62 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 004269 592 YGDFDEALNLLDLVSLEGI-PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~ 669 (764)
.|+++.|+.+++++.+..- .|+...+-.+...|.+.|++++|..++++ . ...|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677888888888776432 12445555577788888888888888877 2 234443 33333444778888888888
Q ss_pred HHHHH
Q 004269 670 EALQV 674 (764)
Q Consensus 670 ~~~~~ 674 (764)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.15 E-value=0.33 Score=48.47 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 547 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
.+.-|.-|...|+...|.++-.+. -.|+...|..-+.+|+..++|++-.++... +-.+.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 333344455556665555554443 235666666667777777776665554321 2234566666667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004269 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
.|+..+|..++.+ +. + ..-+..|.+.|+|.+|.+.
T Consensus 250 ~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHH
Confidence 7776666666555 11 1 2234566667777666554
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.14 E-value=0.0062 Score=48.48 Aligned_cols=88 Identities=17% Similarity=-0.056 Sum_probs=38.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.+.|+........ +..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 34444555555555555555543321 112234444444455555555555555544443211 222333333334444
Q ss_pred cChhHHHHHHH
Q 004269 207 KNLSAVHEIWE 217 (764)
Q Consensus 207 ~~~~~a~~~~~ 217 (764)
|+.+.|...+.
T Consensus 82 ~~~~~a~~~~~ 92 (100)
T cd00189 82 GKYEEALEAYE 92 (100)
T ss_pred HhHHHHHHHHH
Confidence 44444444333
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.013 Score=52.92 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 541 PPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
..|..+|..+++.+.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-
Confidence 35777777777777643 6677777778888888888888888888887754 321 1211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004269 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 664 (764)
.+.++..-|- .+.+-|++++++|...|+.||..++..|++++.+.+.
T Consensus 107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111121 2346678888888888888888888888888877665
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.04 E-value=0.0074 Score=47.98 Aligned_cols=92 Identities=12% Similarity=-0.010 Sum_probs=44.6
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+...|++++|...++...+.... +...+..+...+...++++.|.+.++...+..+.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344455555566666666666655543211 2234444444444455555555555554444343444444444444444
Q ss_pred CCHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHM 253 (764)
Q Consensus 241 g~~~~A~~~~~~~ 253 (764)
|+.+.|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5554444444443
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.04 E-value=0.011 Score=53.35 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCH
Q 004269 505 TPLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 579 (764)
...+-.+|..+|..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+-+..-. -..+|+.+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv--p~n~fQ~~--------- 111 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV--PRNFFQAE--------- 111 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc--cccHHHHH---------
Confidence 345666777777777654 67778888899999999999999999999998763221 11111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
..-|- .+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 112 ------F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ------FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 1234567777777777777777777777777755543
No 167
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.96 E-value=0.016 Score=48.68 Aligned_cols=97 Identities=16% Similarity=0.046 Sum_probs=79.6
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCC--CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCC---CHhhHHHHH
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFV 234 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li 234 (764)
++..+...+.+.|++++|.+.|+.+.+.... .....+..+..++...|+++.|...++.+.+..+. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 5667778888999999999999999875322 11346667888899999999999999999875433 356788888
Q ss_pred HHhhccCCHHHHHHHHHHHHHh
Q 004269 235 WSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~ 256 (764)
.++.+.|+.+.|.+.++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999999999984
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.96 E-value=0.043 Score=47.30 Aligned_cols=88 Identities=9% Similarity=-0.070 Sum_probs=47.1
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
-+...|++++|..+|+-.....+. +..-|-.|--++-..|++++|...|.....-.+.|+..+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 344455555555555555443221 2223333434444455555555555555554455556666666666666666666
Q ss_pred HHHHHHHHH
Q 004269 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~~~~ 255 (764)
.+.|+....
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 666666554
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.92 E-value=0.033 Score=50.50 Aligned_cols=91 Identities=7% Similarity=-0.257 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
...+..+...|...|++++|...|++..+...-+++ ...+..+...+.+.|++++|...++...+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 345666666777778888888877776543211121 245666777777777777777777776664221 333444444
Q ss_pred HHHHhhcChhHHH
Q 004269 201 KLAVWQKNLSAVH 213 (764)
Q Consensus 201 ~~~~~~~~~~~a~ 213 (764)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 4555555544333
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.92 E-value=0.14 Score=44.93 Aligned_cols=101 Identities=11% Similarity=-0.067 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CChhhHHH
Q 004269 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNEVTYTE 198 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ 198 (764)
|++.-.-.|..++.+.|+..+|...|++... ....-|....-.+.++....+++..|...++.+-+..+. -+..+.-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4444444444455555555555555544431 122233333444444444445555555555444433110 01122233
Q ss_pred HHHHHHhhcChhHHHHHHHHHHh
Q 004269 199 LLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
+-+.+...|...+|+..|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 33444444555555554444443
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.91 E-value=0.04 Score=49.93 Aligned_cols=89 Identities=15% Similarity=-0.015 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN--AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
..+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3556666666677777777777777665432221 2345555556666666666666666666532 113444445555
Q ss_pred HHHhcCCHHHHH
Q 004269 588 ILLDYGDFDEAL 599 (764)
Q Consensus 588 ~~~~~g~~~~A~ 599 (764)
.|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544433
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.18 Score=52.75 Aligned_cols=230 Identities=10% Similarity=0.090 Sum_probs=118.7
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHH---------HHHhhhcCCCCChhhhHHHHHHHhccCCHH--HHHHHHHHHhhc
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEASNLI---------YFLGERYGIYPILPVYNSFLGACAKLHSMV--HANLCLDLMDSR 187 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~ 187 (764)
.+.+..+.+-+-.|...|.+++|.++- +.+..+ ..+...++.-=++|.+-.+.. +...-+++|+++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 334444555555666777777665421 111000 012223444455665554433 444456778888
Q ss_pred CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccc
Q 004269 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267 (764)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (764)
|-.|+...... .|+-.|.+.+|.++|. ++|.-..|+++|..|.-
T Consensus 630 ge~P~~iLlA~---~~Ay~gKF~EAAklFk---------------------~~G~enRAlEmyTDlRM------------ 673 (1081)
T KOG1538|consen 630 GETPNDLLLAD---VFAYQGKFHEAAKLFK---------------------RSGHENRALEMYTDLRM------------ 673 (1081)
T ss_pred CCCchHHHHHH---HHHhhhhHHHHHHHHH---------------------HcCchhhHHHHHHHHHH------------
Confidence 88888765443 3566777888877765 55666666666665542
Q ss_pred ccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 004269 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 347 (764)
| ....-+...|..++-..+.++-.+.. -|..--.+....+...|+.++|
T Consensus 674 ----------------------------F-D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KA 722 (1081)
T KOG1538|consen 674 ----------------------------F-DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKA 722 (1081)
T ss_pred ----------------------------H-HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhh
Confidence 0 12233344444443333332221110 0111111112222333444444
Q ss_pred HHH-------------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHH
Q 004269 348 MEV-------------LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414 (764)
Q Consensus 348 ~~~-------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 414 (764)
..+ -+.+.. .+..+...+...+.+...+..|-++|..|.+. .+++..+...+++++|
T Consensus 723 i~i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eA 792 (1081)
T KOG1538|consen 723 IEICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEA 792 (1081)
T ss_pred hhhhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHh
Confidence 332 222221 13344555555566667778888888888754 4567778888888888
Q ss_pred HHHHHHHhccCCCCH
Q 004269 415 IKIFAKMRQKLRPDI 429 (764)
Q Consensus 415 ~~l~~~m~~~~~p~~ 429 (764)
..+-+...+ ..||.
T Consensus 793 FalAe~hPe-~~~dV 806 (1081)
T KOG1538|consen 793 FALAEKHPE-FKDDV 806 (1081)
T ss_pred HhhhhhCcc-ccccc
Confidence 888776655 44554
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.88 E-value=0.2 Score=48.00 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=104.6
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhcH---HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDF---FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
....+...|++++|++.|+.+....+ -++... -.+..++.+.++++.|...+++..+..-.....-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 35556778888888888888877542 222222 34556777888888888888888876422122233233333321
Q ss_pred --cC---------------C---HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh
Q 004269 135 --GG---------------Y---LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV 194 (764)
Q Consensus 135 --~g---------------~---~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (764)
.+ + ...|...|+.+. +-|-...-..+|...+..++.. .-..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDR---LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHH---HHHH
Confidence 11 1 123334444443 3333333344554444444331 0011
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhcCCC---CHhhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
--.+.+.|.+.|.+..|..-++.+++..+. ...+...++.+|.+.|..+.|..+...+.
T Consensus 178 -e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 -ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124556688889999999999999986544 44566777888999999999988776654
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.87 E-value=0.078 Score=49.48 Aligned_cols=177 Identities=12% Similarity=0.055 Sum_probs=104.2
Q ss_pred hhhhHHHHHHHHHhhCCcchHHHHHHhccccCC--CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHH
Q 004269 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 128 (764)
+...+-.....+...|++++|+..|+.+....+ +........+..++.+.|+++.|...++++.+..-......+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 344444557778899999999999999987642 223344667778888999999999999998886311111222222
Q ss_pred HHHHHccC-------------CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhh
Q 004269 129 MQALCKGG-------------YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVT 195 (764)
Q Consensus 129 i~~~~~~g-------------~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 195 (764)
+.+.+... ...+|... +..++.-|-...-..+|...+..+... =..-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 22222111 12233333 444555555555566666655555432 0011
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHh---hHHHHHHHhhccCCHHHHH
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF---SLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~ 247 (764)
--.+.+.|.+.|.+..|..-++.+++.++.+.. +...++.+|.+.|..+.|.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 123556788889999999999988887666654 4566677788888777543
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.055 Score=50.03 Aligned_cols=122 Identities=9% Similarity=-0.124 Sum_probs=63.8
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH-----HHHHHHHHHHHccCCH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN-----KCYLLMMQALCKGGYL 138 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~ 138 (764)
..+.+.-.+.++.+.++.+.+.++.....|.+.-.+.||.+.|...|++..+..-..|. -+.......|.-++++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 34555556666666666555555666666666666666666666666655443212222 2222223344555666
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
.+|...++++...+. .|...-|.-.-++.-.|+...|++.++.|...
T Consensus 269 a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666654432 22223333222333346666666666666664
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.83 E-value=0.0031 Score=49.05 Aligned_cols=80 Identities=13% Similarity=-0.092 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhhcChhHHH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE-VTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~ 213 (764)
.|+++.|+.+|+++.+.....++...+-.+..+|.+.|++++|..+++. ... .|+. .....+..++...|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677777777777765442212333444467777777777777777766 221 2222 22223344455555555555
Q ss_pred HHHH
Q 004269 214 EIWE 217 (764)
Q Consensus 214 ~~~~ 217 (764)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.83 E-value=0.028 Score=50.75 Aligned_cols=65 Identities=9% Similarity=-0.293 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
...|..+...+...|++++|...|++.....+-++ ...+|..+...+...|++++|+..++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555566666666666666543211111 122455555666666666666666665554
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.80 E-value=0.031 Score=57.29 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=48.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 596 (764)
..+...|++++|+.+|++..+.. +-+...|..+..+|...|++++|+..++.+.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 33445566666666666665543 2234445555555555666666666666655542 123444555555566666666
Q ss_pred HHHHHHHHHHH
Q 004269 597 EALNLLDLVSL 607 (764)
Q Consensus 597 ~A~~~~~~m~~ 607 (764)
+|...|++...
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666665553
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.80 E-value=0.052 Score=46.82 Aligned_cols=94 Identities=5% Similarity=-0.128 Sum_probs=81.2
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
-.+-..+...|++++|.++|+.+..-.+.+..-|..|..++-..|++++|+..|..... +.|+.+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp------------- 103 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAP------------- 103 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCc-------------
Confidence 33444467899999999999999998999999999999999999999999999999988 556653
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+-.+..++...|+.+.|.+.|+.....
T Consensus 104 -----------------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 104 -----------------QAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -----------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47778889999999999999999987764
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.048 Score=51.76 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=83.8
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
..+.+++++|...|...++-.+.|.+.|..-..+|++.|..+.|.+-.+.... ++|.-
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~y-------------------- 148 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHY-------------------- 148 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHH--------------------
Confidence 56778899999999999988888999999999999999999999888887776 55543
Q ss_pred CCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 338 (764)
..+|..|-.+|...|++++|++.|++.++ +.|+-.+|..=+...
T Consensus 149 ----------skay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 149 ----------SKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred ----------HHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 25899999999999999999999988886 578888776655443
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.75 E-value=0.035 Score=50.10 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004269 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYP--QTMTYTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 547 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
+..+...+...|++++|...|+........| ...+|..+...|...|+.++|+..+++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444445556666666665555432111 123455555566666666666666666553
No 182
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.75 E-value=0.02 Score=58.59 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=27.0
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..|+++.|.+.|++.++..+.+...|..+..+|.+.|+++.|+..++.+.+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544444455555555555555555555555555554
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.74 E-value=0.79 Score=46.37 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCC-------CCccHHHHHHHHHhcCCHHHHHHHH
Q 004269 347 GMEVLKIMQQNNLKPQDST-IATLSVECSKALELDLAEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKIF 418 (764)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~l~ 418 (764)
-.+++..-...-+.|+-.. ...++..+.+ +.+++..+-+.+.... -..+|..++...++.++..+|-+.+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444556665543 3345544444 4444444444332211 3445777777778888888777777
Q ss_pred HHHhc
Q 004269 419 AKMRQ 423 (764)
Q Consensus 419 ~~m~~ 423 (764)
.-+..
T Consensus 322 ~lL~~ 326 (549)
T PF07079_consen 322 ALLKI 326 (549)
T ss_pred HHHHh
Confidence 65554
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.17 Score=46.89 Aligned_cols=143 Identities=10% Similarity=0.004 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS--- 370 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 370 (764)
..-+.++..+.-.+.+.-.+.++.+..+...+.++.....|.+.--+.||.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35567777777788888888888888876655666677777777778888888888888776654444444444333
Q ss_pred --HHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004269 371 --VECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437 (764)
Q Consensus 371 --~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~ 437 (764)
..|.-.+++..|...|+++.... +++.-|.-.-+..-.|+...|++..+.|.+ ..|...+-.+++-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~-~~P~~~l~es~~~ 327 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ-QDPRHYLHESVLF 327 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc-cCCccchhhhHHH
Confidence 34555678888888888887664 455555444445556888999999998887 5566666665543
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.68 E-value=0.0082 Score=43.87 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=44.8
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCc
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (764)
..+...|++++|.+.|+.+++..+.+...+..+..++...|++++|...|+.+.+ ..|+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 4566777888888888888877777788888888888888888888888888876 4444
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.67 E-value=0.14 Score=55.10 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=72.6
Q ss_pred CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhC--------ChhHHHHHHHHH
Q 004269 505 TPLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNA-ATYNIMIDCCSIIR--------CFKSASALVSMM 570 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g--------~~~~a~~~~~~~ 570 (764)
.+.+...|...+.+.... +....|..+|++..+. .|+- ..+..+..++.... ++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345666777777664432 2256788888887775 4553 33333322222111 112222222222
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004269 571 VRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 571 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
... ....+...|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 221 12223445555544444556666666666666543 35555666666666666666666666666553 44544
Q ss_pred HHH
Q 004269 650 STC 652 (764)
Q Consensus 650 ~~~ 652 (764)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 443
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.59 E-value=0.74 Score=44.20 Aligned_cols=57 Identities=14% Similarity=-0.079 Sum_probs=32.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004269 298 DVIHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 354 (764)
.+.+-|.+.|.+..|..-++.+.+.= .+........++.++...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455666777777777777766531 1112234455666666666666666655444
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=1.5 Score=47.32 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=183.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL--RNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~ 372 (764)
+-..+|.-+...+.+..|+++-.-+...-..- ...|.....-+.+..+. +++.+..++=.+.... +...|..+..-
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~ 516 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARR 516 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHH
Confidence 44467888888899999999887776322111 34444444444444322 2232222222222223 44567777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-------CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCc
Q 004269 373 CSKALELDLAEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445 (764)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~ 445 (764)
.-.+|+.+.|..+++.=+..+ +..-+...+.-....|+.+-...++-+|... -+...|...+.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~--~~~s~l~~~l~-------- 586 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK--LNRSSLFMTLR-------- 586 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH--HHHHHHHHHHH--------
Confidence 778999999999887654432 3334566677777888888887777776641 11111111111
Q ss_pred hhhchhhhhhhhHHHHHHHHHH-HHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-----CCCCChhhHHHHHHHH
Q 004269 446 YEEGNMFSQVDSAKRINAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-----KTPLGTPTYNTVLHSL 519 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~li~~~ 519 (764)
....+..++.+ |.+.+- ..+-+.|-...+...+-.+.-+. ...+-...-....+.+
T Consensus 587 -----------~~p~a~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 587 -----------NQPLALSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred -----------hchhhhHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 11111112221 111111 11222333222222222221111 0011111122222333
Q ss_pred HHcCC----------hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 520 VEAQE----------SHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 520 ~~~~~----------~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
++... ..+-+.+.+.+..+ |..-...|.+--+.-+...|+..+|.++-.+. -.||-..|-.=+.+
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~a 724 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHH
Confidence 33322 11222233333322 33334445555666677788888888887766 35888888888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004269 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 668 (764)
++..+++++-+++-+.+. .+.-|...+.+|.+.|+.++|.+++.+.. |.. -...+|.+.|++.+|
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHH
Confidence 999999998887776643 35678888899999999999998887653 221 356789999999998
Q ss_pred HHHH
Q 004269 669 MEAL 672 (764)
Q Consensus 669 ~~~~ 672 (764)
.+.-
T Consensus 790 ad~A 793 (829)
T KOG2280|consen 790 ADLA 793 (829)
T ss_pred HHHH
Confidence 7754
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.53 E-value=0.97 Score=44.75 Aligned_cols=286 Identities=13% Similarity=0.049 Sum_probs=164.8
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHH--HHHHHHHHHccCC
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKC--YLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~ 137 (764)
....|+-..|.++-.+-... +.-|...+..||.+-. -.|+++.|++-|+-|... |.... ...|.-.--+.|+
T Consensus 94 AagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 94 AAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhccc
Confidence 34467777777765553311 2344455556665443 348888888888888753 22222 2223333346788
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCChh--hHHHHHHHHHh---hcChhH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEV--TYTELLKLAVW---QKNLSA 211 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~~~~~~ 211 (764)
.+.|+++-++...+- +--...+.+.+...+..|+++.|+++.+.-+... +.++.. .-..|+.+-.. .-|...
T Consensus 170 reaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 170 REAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred HHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 888888777664332 1223567778888888888888888887766542 344443 22333333221 223445
Q ss_pred HHHHHHHHHhcCCCCH-hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIKHYSLSI-FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|...-.+..| +.||. ..--.-..++.+.|+..++-++++.+-+....|+.
T Consensus 248 Ar~~A~~a~K-L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---------------------------- 298 (531)
T COG3898 248 ARDDALEANK-LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI---------------------------- 298 (531)
T ss_pred HHHHHHHHhh-cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----------------------------
Confidence 5544444443 23332 22333445677888888888888888774444432
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 368 (764)
.++..+.+.|+. ++.=+++.... .++||. ...-.+..+....|++..|..--+.... ..|....|..
T Consensus 299 -------a~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lL 367 (531)
T COG3898 299 -------ALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLL 367 (531)
T ss_pred -------HHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHH
Confidence 233445555554 33333333221 134443 4555666777778888777765555443 4567777777
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHhhCC
Q 004269 369 LSVECSK-ALELDLAEALLDQISRCT 393 (764)
Q Consensus 369 li~~~~~-~g~~~~a~~~~~~~~~~~ 393 (764)
|.+.-.- .|+-.++...+.+....+
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCC
Confidence 7776544 488888888888877665
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.52 E-value=0.009 Score=44.16 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=35.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655 (764)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 655 (764)
.+.|++++|+++|+++.... +-+...+..+...|.+.|++++|.++++++.. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 34566666666666665432 22555556666666666666666666666664 34554444433
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.49 E-value=0.14 Score=42.46 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=52.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKILL 590 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~ 590 (764)
.++-..|+.++|+.+|++....|..... ..+..+-..+...|++++|..+++...... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 4455667777777777777776654432 234445556667777777777777666542 22 111122334556
Q ss_pred hcCCHHHHHHHHHHHH
Q 004269 591 DYGDFDEALNLLDLVS 606 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~ 606 (764)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777765544
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.41 E-value=0.073 Score=44.17 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=50.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH-HHHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD---PSTCHFV-FSGY 659 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l-l~~~ 659 (764)
..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++.... .|+ ......+ .-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3455556777777777777766665443 234555666667777777777777766642 233 2222222 2355
Q ss_pred HhcCChHHHHHHHH
Q 004269 660 VNCGFHNSAMEALQ 673 (764)
Q Consensus 660 ~~~g~~~~a~~~~~ 673 (764)
...|+.++|++.+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 66677777766554
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.38 E-value=0.046 Score=51.89 Aligned_cols=99 Identities=8% Similarity=0.052 Sum_probs=61.5
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004269 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDV 632 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 632 (764)
..+.+++.+|+..|.+.++.. +-|.+.|..=..+|.+.|.++.|++=.+..+.. .|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 445566777777777766642 224455555566677777777777666665532 332 3466677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 633 IEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
|++.|++.++ +.|+..+|..-+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 7777777663 6677666655444
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.36 E-value=0.16 Score=50.34 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=27.2
Q ss_pred HHHHHHHhhCC-CChhHHHHHHHHHHHc----Cccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 90 FFHILNYCARS-PDPLFVMETWRMMEEK----EIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 90 ~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
+..+...|-.. |+++.|.+.|++..+. |.+. -..++..+...+.+.|++++|.++|+++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455555555 5555555555554432 1000 12234445555555555555555555553
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.33 E-value=0.02 Score=42.43 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=48.0
Q ss_pred ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC-CHHHHHHHHHHHHH
Q 004269 192 NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR-DLKSAYETLQHMVA 255 (764)
Q Consensus 192 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 255 (764)
+..+|..+-..+...|++++|...|++.++..+.+...+..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666667777777777777777777777777777888888888888 68888888887766
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.29 E-value=0.013 Score=43.22 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=33.9
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..|++++|.++++.+.+..|.+..++..+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666666677777777777777777776665
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.28 E-value=0.062 Score=45.10 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH--------------hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFL--------------GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m--------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
..++..+|.++++.|+++....+++.. ....+..|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345555666666666666666655543 223345566666677777777777777777777666543
Q ss_pred -CCCCChhhHHHHHHHHH
Q 004269 188 -MVGKNEVTYTELLKLAV 204 (764)
Q Consensus 188 -g~~p~~~t~~~ll~~~~ 204 (764)
+++.+..+|..|++.+.
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 55556666666666543
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.28 E-value=0.023 Score=41.51 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
...+.+.|++++|.+.|+.+++.. +-+...+..+...+...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666665432 22444555555666666666666666666553
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.27 E-value=0.38 Score=51.76 Aligned_cols=137 Identities=7% Similarity=-0.138 Sum_probs=76.4
Q ss_pred CCCChhcHHHHHHHhhCC-----CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc--------CCHHHHHHHHHHHh
Q 004269 83 HSLGADDFFHILNYCARS-----PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG--------GYLEEASNLIYFLG 149 (764)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~ 149 (764)
.+.+...|...+++.... ++...|+++|++..+.+ +-....|..+..+|... .++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 356667777777764432 23557888888888774 22333444433333221 11223333333322
Q ss_pred hhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhc
Q 004269 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 150 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
.....+.+...|..+.-.+...|++++|...|++..... |+...|..+.+.+...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111122333456666555555677777777777777643 56666777777777777777777777666553
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.26 E-value=0.74 Score=40.55 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH
Q 004269 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE---GIPHDVLL 616 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~ 616 (764)
+.|+...--.|-.+....|+..+|...|++...--+.-|....-.+.++....+++.+|...++.+.+. +-.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 467777777888899999999999999999887767778888888888999999999999999988764 22344 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.-.+.+.+...|+...|+..|+...+ .-|+...-...-..+.+.|+.+++..-+..+..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 55677888899999999999999986 556655444445567888988888766555544
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.08 E-value=0.8 Score=42.71 Aligned_cols=177 Identities=11% Similarity=0.021 Sum_probs=82.9
Q ss_pred HHhhCCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004269 95 NYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
..+...|++..|.+.|+.+.... .+--....-.++.++-+.|+++.|...+++..+..+-.|.. .+...+.+.+...
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHH
Confidence 33445677777777777777642 11123344456666777777777777777766554333321 2222233322111
Q ss_pred CHHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNE-------VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
...... ....|. .++..++.-|=.+.-...|...+..+..... ..--.+...|.+.|.+..
T Consensus 92 ~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la---~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 92 QIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA---EHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHCTT-HHH
T ss_pred hCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcccHHH
Confidence 111110 000011 1222222222223333333333222221100 011124567889999999
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHH
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 313 (764)
|..-++.+.+. -|+.... ..+.-.++.+|.+.|..+.+.
T Consensus 160 A~~r~~~v~~~--yp~t~~~---------------------------~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDTPAA---------------------------EEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--STTSHHH---------------------------HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--CCCCchH---------------------------HHHHHHHHHHHHHhCChHHHH
Confidence 99999999883 3333111 136667888888888877443
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.00 E-value=0.63 Score=48.97 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=132.9
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 004269 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405 (764)
Q Consensus 326 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~ 405 (764)
|....+.+=+-.+...|.+++|.++- -.|+ ...-+.-|..-....-+++-|++.+.++...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia----clgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA----CLGV--TDTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc----ccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 44445555555666777777765531 1122 1222333333333333444444444333322
Q ss_pred HhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 004269 406 DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484 (764)
Q Consensus 406 ~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (764)
.+-+.+.-+++|++ |-.|+....... |+-.|.+.++.++|..-+...++.+.+-+|.-. -++
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iLlA~~---~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF----------D~a 677 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLLLADV---FAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF----------DYA 677 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHHHHHH---HHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH----------HHH
Confidence 23344455666777 777777654433 344455555555554433333333222211100 012
Q ss_pred HHHHhcCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHH-----H-HhCCCC---CCHHHHHHHHHHH
Q 004269 485 KALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESHRAMEIFKQ-----M-KTCGIP---PNAATYNIMIDCC 554 (764)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~l~~~-----m-~~~g~~---p~~~t~~~ll~~~ 554 (764)
.-|...|..++-..+.++... ..++.---+....+...|+..+|..+.-+ | .+-+-+ .+..+...+...+
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL 757 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH
Confidence 222333333322222221100 00110111233444555666666654321 1 111111 2334444444445
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHH
Q 004269 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL-----------LYNTILKK 623 (764)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------~~~~li~~ 623 (764)
-+...+..|-++|..|-+. ..+++.....+++++|..+-++..+ +.||+. -|.-.-.+
T Consensus 758 k~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHH
Confidence 5566677788888877542 3467778888999999988887653 345543 23445567
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 004269 624 ACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~ 643 (764)
|.++|+-.+|..+++++...
T Consensus 827 fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhh
Confidence 88888888888888887653
No 203
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=2.4 Score=46.50 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=38.6
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
+.|++++|...+-+-.. -+.|+ .++.-|....+...-...++.+.+.|+. +...-..|+.+|.+.++.+...
T Consensus 380 ~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIG--FLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred hcCCHHHHHHHHHHHcc--cCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 45666666555544321 11221 2444444455555555555555555554 3333355556666666665555
Q ss_pred HHHHHH
Q 004269 214 EIWEDY 219 (764)
Q Consensus 214 ~~~~~~ 219 (764)
++.+..
T Consensus 452 efI~~~ 457 (933)
T KOG2114|consen 452 EFISKC 457 (933)
T ss_pred HHHhcC
Confidence 544433
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.94 E-value=0.23 Score=43.50 Aligned_cols=71 Identities=17% Similarity=-0.016 Sum_probs=51.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh-----cCCCCChhhH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVTY 196 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 196 (764)
+...++..+...|++++|..+.+.+...+ +-+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 56677778888999999999999887655 44777899999999999999999999988754 3778877653
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.89 E-value=0.038 Score=40.88 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 004269 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMH 641 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 641 (764)
.|..+...+...|++++|+..|++.++.. +.+...|..+..+|...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444321 123334444444444444 3444444444443
No 206
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.89 E-value=0.81 Score=37.76 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=85.8
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||.+|--....-+-+-..++++.+..-+.+.|- .-...++..|++.|.
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK------ 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc------
Confidence 477888888888877653 4555666665555555566677777777544322210 112334444544443
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
+..-....+.....+|.-++-.+++..+.+...+++...-.+..+|.+.|+..++.+++.+.-++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556677788888899999999988888889999999999999999999999999999998865
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.82 E-value=0.13 Score=49.75 Aligned_cols=99 Identities=11% Similarity=-0.040 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC---HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS---IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (764)
.|...+....+.|++++|...|+.+++.+|.+ +.++..+..+|...|+++.|...|+.+.+. .|+.+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~------ 216 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKA------ 216 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcch------
Confidence 34444444445566777777777766655444 245566666677777777777777777652 2322100
Q ss_pred ccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
...+-.+...+...|+.+.|..+|++..+.
T Consensus 217 ---------------------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 217 ---------------------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 024444455566667777777777766654
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.80 E-value=0.085 Score=44.26 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=47.3
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 117 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999888899999987543
No 209
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.78 E-value=2.3 Score=42.02 Aligned_cols=61 Identities=10% Similarity=-0.097 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhhcChh---HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 195 TYTELLKLAVWQKNLS---AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
++..+..++...+..+ +|.++++.+.+.++..+.++-.-+.++.+.++.+.+.+++.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3444555555544433 344444444444444444454555555556666667677666665
No 210
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=1.5 Score=47.96 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCC
Q 004269 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~ 443 (764)
-++..+....+.+.+..+.+...+. ++..|-.+++.|++.+..+...+...+..+ -..-+...-..+++.+++.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 5677778888888888888888877 889999999999999876666555554443 11112222234455555544
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.73 E-value=0.07 Score=52.62 Aligned_cols=268 Identities=8% Similarity=-0.129 Sum_probs=138.8
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCCh----hcHHHHHHHhhCCCChhHHHHHHHHHHH----cCc-cccHHHHHHHH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGA----DDFFHILNYCARSPDPLFVMETWRMMEE----KEI-GLNNKCYLLMM 129 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~~~~~~li 129 (764)
..-+++.|+.+.-+.+|+...+.|. -|. ..|..|.++|.-.+|++.|++++..=+. .|- .-...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 4568899999999999999998773 333 3477777888888999999888754221 110 11222333445
Q ss_pred HHHHccCCHHHHHHHHHHHhh---h--cCCCCChhhhHHHHHHHhccCCH--------------------HHHHHHHHHH
Q 004269 130 QALCKGGYLEEASNLIYFLGE---R--YGIYPILPVYNSFLGACAKLHSM--------------------VHANLCLDLM 184 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~---~--~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m 184 (764)
+.+--.|.+++|.....+-.. . +.+. ....+..|..+|...|+. +.|.+.|.+=
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~-e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVL-ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHh-hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 555556677777554322111 0 0011 112344466666554432 3333333321
Q ss_pred ----hhcCC-CCChhhHHHHHHHHHhhcChhHHHHHHHHHHh---cC---CCCHhhHHHHHHHhhccCCHHHHHHHHHHH
Q 004269 185 ----DSRMV-GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---HY---SLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 185 ----~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (764)
.+.|- ......|..|-..|.-.|+++.|...++.-+. .+ .....++..+.++++-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 11110 01112344444455556667776666554432 11 122345666666777777777777766664
Q ss_pred HHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCc
Q 004269 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----G-LQPSS 328 (764)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~ 328 (764)
....+.-.. +.+.+.+.-+|...|.-...+++|+.++.+-... + ..-..
T Consensus 262 l~LAielg~--------------------------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 262 LNLAIELGN--------------------------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HHHHHHhcc--------------------------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 432222111 1111234445666666666666666666543321 0 11123
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHH
Q 004269 329 HTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 329 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 354 (764)
..+.+|-.++...|.-+.|+.+.+.-
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45556666666666666665554443
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.63 Score=44.70 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=15.3
Q ss_pred CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.|.|...|-.|..+|...|+.+.|...|....+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.67 E-value=2.6 Score=41.94 Aligned_cols=285 Identities=16% Similarity=0.054 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHH--ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh--ccCCHHHHH
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALC--KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA--KLHSMVHAN 178 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~ 178 (764)
+..+.+.|..-++. .-|..|-.++. ..|+-..|.++-.+-. .-+..|....-.|+.+-. -.|+++.|.
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 44455555544432 24555555554 4678888888776553 234456666666666543 359999999
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHH----HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 179 LCLDLMDSRMVGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
+-|+.|.. |..|-..=+++ .-+.|+.+.|.++-+.....-+.-.+.+...+...+..|+++.|+++.+.-.
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999987 44444333333 3467888999888888887778888999999999999999999999999877
Q ss_pred HhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH---ccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004269 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG---RTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~ 331 (764)
+..+....... ..-..|+.+-. -..+...|...-.+..+ +.||..--
T Consensus 216 ~~~vie~~~ae----------------------------R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPa 265 (531)
T COG3898 216 AAKVIEKDVAE----------------------------RSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPA 265 (531)
T ss_pred HHHhhchhhHH----------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchH
Confidence 64332221100 11122222211 12345556555555444 46776533
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHhhCCCCccHHHHHHHHH
Q 004269 332 -DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE----ALLDQISRCTNPKPFSAFLAACD 406 (764)
Q Consensus 332 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~~~~~~~~~~~~~li~~~~ 406 (764)
...-+++.+.|++.++-.+++.+-+....|+.. ++-.+.+.|+..... +-+..|+.. +..+--++..+-.
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~n-naes~~~va~aAl 340 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPN-NAESSLAVAEAAL 340 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHH
Confidence 233467889999999999999999887776542 222345566543221 223444444 6666667777778
Q ss_pred hcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004269 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLF 436 (764)
Q Consensus 407 ~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll 436 (764)
..|++..|..--+.... ..|....|..+-
T Consensus 341 da~e~~~ARa~Aeaa~r-~~pres~~lLlA 369 (531)
T COG3898 341 DAGEFSAARAKAEAAAR-EAPRESAYLLLA 369 (531)
T ss_pred hccchHHHHHHHHHHhh-hCchhhHHHHHH
Confidence 88888877765544433 567777766554
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.67 E-value=3.8 Score=43.89 Aligned_cols=332 Identities=12% Similarity=0.092 Sum_probs=161.5
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004269 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKP--------QDSTIATLSVECSKALELDLAEALLDQISRCTNP 395 (764)
Q Consensus 325 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 395 (764)
.|-+..|..+.......-.++.|...|-.... .|++. +...-.+=+.+| -|++++|++++-.+..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 56777787777776676777777777655543 12221 111111112222 37788888887777655
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHH-HHHH-----HH-
Q 004269 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR-INAI-----EM- 466 (764)
Q Consensus 396 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~--~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~- 466 (764)
...|..+.+.|++-...++++.--.+ -.--...++.+-..++....++++.+.+..-...+. +..+ +.
T Consensus 764 ---DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 764 ---DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred ---hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 22344455555555555544321110 000011222222222222233333332221111111 1110 01
Q ss_pred -HHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 004269 467 -DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545 (764)
Q Consensus 467 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 545 (764)
+.....++.+....-.+.+++.+.|--++|.+.|-+...+ -+.+.+|...+++.+|.++-+...- |...
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~~l----~qv~ 910 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRFQL----PQVQ 910 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhccc----hhHH
Confidence 1223345566677778888999999888888887665332 2345667777888888887766432 2222
Q ss_pred HHH--------------HHHHHHHhhCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHH---------------Hhc
Q 004269 546 TYN--------------IMIDCCSIIRCFKSASALVSMMVRD----GFYPQTMTYTALIKIL---------------LDY 592 (764)
Q Consensus 546 t~~--------------~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~~~~~~~li~~~---------------~~~ 592 (764)
|.. -.|..+.+.|..-.|-+++.+|.+. +.+|-..---.++.++ -+.
T Consensus 911 tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~ 990 (1189)
T KOG2041|consen 911 TLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKH 990 (1189)
T ss_pred HHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 221 1233345556555555565555532 3333221111111111 134
Q ss_pred CCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 004269 593 GDFDEALNLLDLVSLE---GIP------HDVLLYNTILKKACEKGRIDVIEFIIEQMHQN-KVQPDPSTCHFVFSGYVNC 662 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~---~~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~ 662 (764)
|..++|.++++..... .+. ...+.|-.|..-....|.++.|.+..-.+.+. .+-|....|..|.-+-+..
T Consensus 991 g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 991 GFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred CcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 6666676655543211 010 12234445555556778888888766555543 4566666665544443444
Q ss_pred CChHHHHHHHHH
Q 004269 663 GFHNSAMEALQV 674 (764)
Q Consensus 663 g~~~~a~~~~~~ 674 (764)
..+...-+.|-+
T Consensus 1071 raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1071 RAFGTCSKAFMK 1082 (1189)
T ss_pred hhhhhhHHHHHH
Confidence 444444344433
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.55 E-value=1.1 Score=45.38 Aligned_cols=76 Identities=9% Similarity=-0.065 Sum_probs=38.7
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCC---CCChhcHHHHHHHhhC---CCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHH---SLGADDFFHILNYCAR---SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
.++.+|....+|+..+++.+.+..... .-....-....-++.+ .|+.+.|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344556666666666666666654311 1111111111222233 5666666666666555444556666665555
Q ss_pred HH
Q 004269 131 AL 132 (764)
Q Consensus 131 ~~ 132 (764)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 216
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.52 E-value=0.11 Score=48.68 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=73.9
Q ss_pred CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCh----------------hHHH
Q 004269 506 PLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF----------------KSAS 564 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----------------~~a~ 564 (764)
+.|-.+|-+++..+... +.++-....++.|.+-|+.-|..+|+.||+.+-+.... +-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 55667888888777654 56677777888999999999999999999988765432 2478
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004269 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 595 (764)
.++++|..+|+.||-.+-..|++++.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999988763
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.50 E-value=3.3 Score=42.00 Aligned_cols=147 Identities=14% Similarity=0.251 Sum_probs=112.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHH-HHH
Q 004269 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY-TAL 585 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~l 585 (764)
-+..|...|++..+....+.|..+|-+..+.| +.++...++++|.-++ .|+...|..+|+.=... + ||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHH
Confidence 35578888998888889999999999999998 6788889999998766 58888999999765543 2 444333 567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 660 (764)
+.-+.+-++-+.|..+|+..... +..+ ..+|..+|+--..-|+...+..+-++|.+ +-|-..+.....+-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 77788889999999999965532 2223 45899999988899999999988888885 5566655555555444
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.49 E-value=3.1 Score=42.18 Aligned_cols=97 Identities=9% Similarity=-0.087 Sum_probs=63.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcC--CCCChhhhHHHHHHHhc---cCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAK---LHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
...++-+|-...+++..+++.+.+..-.. +..+...--...-++.+ .|+.++|+.++..+....-.++..||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33555578899999999999999854211 11111122233445566 79999999999997666667888888888
Q ss_pred HHHHHh---------hcChhHHHHHHHHHHh
Q 004269 200 LKLAVW---------QKNLSAVHEIWEDYIK 221 (764)
Q Consensus 200 l~~~~~---------~~~~~~a~~~~~~~~~ 221 (764)
.+.|-. ...+++|...|.+.-+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 776643 1224566666655443
No 219
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=3.2 Score=41.73 Aligned_cols=85 Identities=12% Similarity=0.027 Sum_probs=45.1
Q ss_pred HhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHH--HHHHhcCCHHH
Q 004269 339 VSDRGLRNGMEVLKIMQQNN---LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL--AACDTMDKPER 413 (764)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~ 413 (764)
.+.|++..|.+.|.+.+... ..|+...|-.......+.|+..+|+.--++.....+..++.-+. .++.-.+++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665432 33444445555555566667776666666665542222222222 22334456666
Q ss_pred HHHHHHHHhc
Q 004269 414 AIKIFAKMRQ 423 (764)
Q Consensus 414 a~~l~~~m~~ 423 (764)
|++-|++..+
T Consensus 340 AV~d~~~a~q 349 (486)
T KOG0550|consen 340 AVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.48 E-value=0.21 Score=48.30 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=60.3
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC---HhhHHHHH
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS---IFSLRKFV 234 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li 234 (764)
.|+..+..+.+.|++++|...|+.+.+.-+... ..++..+...|...|+++.|...|+.+.+.++.+ ..++..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777766532211 2355566666777777777777777777654443 33444455
Q ss_pred HHhhccCCHHHHHHHHHHHHH
Q 004269 235 WSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+...|+.+.|.++|+.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666777888888888887776
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.44 E-value=0.094 Score=45.96 Aligned_cols=68 Identities=28% Similarity=0.441 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004269 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
..++..+...|++++|..+.+++.... +-|...|..+|.+|...|+...|.++|+++.. .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345555556666666666666665432 23555666666666666666666666665542 356665554
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.32 E-value=3.9 Score=41.69 Aligned_cols=140 Identities=10% Similarity=0.010 Sum_probs=86.2
Q ss_pred HHHhhCCcchHHHHHHhccccCCCCCh------hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH--H
Q 004269 61 DALCRGERSRASHLLLNLGHAHHSLGA------DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA--L 132 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~ 132 (764)
.+-++++..+|..+|.++...- .-++ ..-+.++++|..+ +.+.....+....+.- | ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3557899999999999886542 2222 2246678888754 4555555555555431 2 2233333333 3
Q ss_pred HccCCHHHHHHHHHHHhhhc-CC------------CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC----CChhh
Q 004269 133 CKGGYLEEASNLIYFLGERY-GI------------YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG----KNEVT 195 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~-~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t 195 (764)
-+.+.+.+|.+.|......- +. -+|...-+..+..+...|++.++..++++|...=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 36788999999887664320 11 112223356677788899999999998888765333 67778
Q ss_pred HHHHHHHHHh
Q 004269 196 YTELLKLAVW 205 (764)
Q Consensus 196 ~~~ll~~~~~ 205 (764)
|+.++-.+.+
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8875554443
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.27 E-value=0.054 Score=40.62 Aligned_cols=52 Identities=17% Similarity=0.015 Sum_probs=25.1
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
+.+.++++.|.++++.+.+.+ +.++..+......+.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344455555555555555443 2344444444444555555555555555444
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.14 E-value=3 Score=39.35 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=30.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 299 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
+.+-|.+.|.+..|..-+++|.+. .+-+.. .+-.+..+|-..|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345566666666666666666654 221222 23444556666666666665544443
No 225
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=4.2 Score=40.90 Aligned_cols=263 Identities=10% Similarity=-0.079 Sum_probs=145.6
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhc
Q 004269 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (764)
.+.....+-++.++.+|+ ..|....+..|+... .|......+..-+++++|.--.+.-.+.. +-....
T Consensus 52 ~k~~gn~~yk~k~Y~nal----------~~yt~Ai~~~pd~a~-yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~ 119 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNAL----------KNYTFAIDMCPDNAS-YYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKG 119 (486)
T ss_pred HHhhcchHHHHhhHHHHH----------HHHHHHHHhCccchh-hhchhHHHHHHHHhHhhcccchhhheecC-CCcccc
Confidence 334445566667777777 555666666777633 34444556677777777776665554432 112223
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHH---------------HcC-ccccHHHHHHHH-HHHHccCCHHHHHHHHHHHhhhc
Q 004269 90 FFHILNYCARSPDPLFVMETWRMME---------------EKE-IGLNNKCYLLMM-QALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~---------------~~~-~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~ 152 (764)
+...-+++...++...|.+.++.-. ... -+|.-..|..+- ..+.-.|+.++|...--.+.+-+
T Consensus 120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 4444444444444444444333211 111 123333443332 23445688888877766665432
Q ss_pred CCCCChhhhHHHHHHHh--ccCCHHHHHHHHHHHhhcCCCCChhhHHH---HHH----------HHHhhcChhHHHHHHH
Q 004269 153 GIYPILPVYNSFLGACA--KLHSMVHANLCLDLMDSRMVGKNEVTYTE---LLK----------LAVWQKNLSAVHEIWE 217 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~----------~~~~~~~~~~a~~~~~ 217 (764)
....+...+++.+ -.++.+.|..-|++-...+ |+...--. ..+ -..+.|++..|.+.|.
T Consensus 200 ----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 200 ----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred ----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 2234555555443 3577788888888776643 43332211 122 2235677778888888
Q ss_pred HHHhc----CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 218 DYIKH----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 218 ~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
+.+.. ..++...|.....+..+.|+.++|+.--+...+ +++.- .
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~sy------------------------------i 321 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSY------------------------------I 321 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHH------------------------------H
Confidence 77753 455666677777777888888888777776665 33321 0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..|---..++...++|++|.+-|+...+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12222234455567777777777776654
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.07 E-value=0.081 Score=39.63 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=40.8
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..|.+.++++.|.++++.+.+..|.++..+.....++...|++++|...|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456667777777777777776677777777777778888888888888888776
No 227
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.04 E-value=0.41 Score=47.50 Aligned_cols=230 Identities=10% Similarity=-0.045 Sum_probs=117.0
Q ss_pred HHhhCCCChhHHHHHHHHHHHcCc---cccHHHHHHHHHHHHccCCHHHHHHHHHH-------HhhhcCCCCChhhhHHH
Q 004269 95 NYCARSPDPLFVMETWRMMEEKEI---GLNNKCYLLMMQALCKGGYLEEASNLIYF-------LGERYGIYPILPVYNSF 164 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~~~~~~~~~~~~~l 164 (764)
.-+++.|+.+....+|+..++-|. ..=..+|..|.++|.-.+++++|.++..- |..+.| ...+...|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG---EAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG---EAKSSGNL 101 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc---cccccccc
Confidence 346788999999999999999873 22234778888888889999999886531 211212 11223334
Q ss_pred HHHHhccCCHHHHHHHHHH----HhhcCCC-CChhhHHHHHHHHHhhcC--------------------hhHHHHHHHHH
Q 004269 165 LGACAKLHSMVHANLCLDL----MDSRMVG-KNEVTYTELLKLAVWQKN--------------------LSAVHEIWEDY 219 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~----m~~~g~~-p~~~t~~~ll~~~~~~~~--------------------~~~a~~~~~~~ 219 (764)
-+.+--.|.+++|+-.-.. .++.|-. .....+..+-..|...|. ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 4444455666666543222 1221111 122233344444443332 12222333222
Q ss_pred Hhc------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 220 IKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 220 ~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
++- -..-...|..|.+.|.-.|+++.|+...+.-.+......+ +....
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD--------------------------rAaeR 235 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD--------------------------RAAER 235 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh--------------------------HHHHH
Confidence 210 0111234556666666777777777666554331111111 00012
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQS----LGL-QPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 353 (764)
.++..+..++.-.|+++.|.+.|+.-.. .|- .......-+|-+.|.-...+++|..++..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777776665432 110 11122333444555555555555555543
No 228
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=1.3 Score=42.73 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=81.2
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh---hcChhHHHHHHHHHHhcCCCCHhhHH
Q 004269 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW---QKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
+-|...|-.|...|...|+.+.|..-|....+.. .++...+..+-.++.. ..+-.++.++++++++..+.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4577789999999999999999999999988752 2244444444444433 33456899999999999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHH
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.|...+...|++.+|...|+.|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 999999999999999999999998
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=1.3 Score=40.96 Aligned_cols=209 Identities=11% Similarity=0.042 Sum_probs=105.0
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
.|.....+|....+++.|...+.+..+. .+.|...|.+ ..+ ++.|.-+.++|.+- +--+..|+.-...|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-AKa------yEqaamLake~~kl---sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-AKA------YEQAAMLAKELSKL---SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-HHH------HHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 4555566666667777777766665532 2233333322 222 35555555555321 11133566677778
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC------CCCHhhHHHHHHHhhccCC
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY------SLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~ 242 (764)
..+|..+.|-..++..-+. ...-+.+.|.++|.+...-+ ..-...+...-+++.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888877777666654331 12223334444444333211 1111223344456677777
Q ss_pred HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
+++|-..|.+-......-+..... --.|-+.|-.+....++..|...++.--+.
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~--------------------------~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQ--------------------------CKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccH--------------------------HHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 777665555433221111110000 023555666667777788888877774433
Q ss_pred C---CCCCcccHHHHHHHHHhcCChhHHHHHH
Q 004269 323 G---LQPSSHTYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 323 g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 351 (764)
+ -.-|..+...||.+| ..|+.+++..+.
T Consensus 220 p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 220 PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred ccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 2 122344566666655 455666555443
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.80 E-value=1.2 Score=47.51 Aligned_cols=93 Identities=14% Similarity=0.015 Sum_probs=46.7
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhc-CCCCChh------hHHHHHHHHHh----hcChhHHHHHHHHHHhcCCCCHhh
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEV------TYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFS 229 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~------t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 229 (764)
...++....=.||-+.+++.+....+. ++. ... +|..++..+.. ..+.+.+.+++..+.+.+|.+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 334444555556666666666654432 111 111 23333333322 234455666666666555555555
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 230 LRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
.-.-.+.+...|+++.|++.|+...
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 5555555556666666666666543
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.73 E-value=3.7 Score=38.73 Aligned_cols=179 Identities=12% Similarity=0.051 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCCh---hcHHHHHHHhhCCCChhHHHHHHHHHHHcC-ccccHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA---DDFFHILNYCARSPDPLFVMETWRMMEEKE-IGLNNKCYLLMM 129 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li 129 (764)
.|-..+..-...|++++|.+.|+.+.... +.++ .+...++-++-+.++++.|+...++..+.. -.||. -|-.-|
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 33344556777888888888888887654 3333 334455556667888888888888887764 23333 333334
Q ss_pred HHHHcc-------CCHHHHHH---HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 130 QALCKG-------GYLEEASN---LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 130 ~~~~~~-------g~~~~A~~---~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
.+++.- .+...+.+ -|+.+.++. || ..-...|..-+..+... =..-=..+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~I 173 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLNDA----LAGHEMAI 173 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHHHH----HHHHHHHH
Confidence 444321 22222222 233333221 22 11111111111111110 00000223
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHh---hHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIF---SLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
.+.|.+.|.+..|..-++.+++..+.... .+-.+..+|...|-.++|.+.-.-+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 45566777777777777777765444333 34445556777777777766655444
No 232
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.68 E-value=4.1 Score=40.30 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--hC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 004269 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI--IR----CFKSASALVSMMVRDGF---YPQTMTYTALIKILLDYGD- 594 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~g~---~p~~~~~~~li~~~~~~g~- 594 (764)
+.+.+.+++.|.+.|++-+..+|-+....... .. ...++..+|+.|.+... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 35667889999999999888888664433332 22 34579999999998732 3455666666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HH-HHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH-
Q 004269 595 ---FDEALNLLDLVSLEGIPHDVL-LY-NTILKKACEKGR--IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN- 666 (764)
Q Consensus 595 ---~~~A~~~~~~m~~~~~~p~~~-~~-~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~- 666 (764)
.++++.+|+.+...|+..+-. -+ ..++..+..... ..++.++++.+.+.|+++.... ...++.++-.++.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~-yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH-YPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc-ccHHHHHHhcCCchH
Confidence 466788888888888877432 33 333332222211 4578899999999999888776 45566666555444
Q ss_pred HHHHHHHHH
Q 004269 667 SAMEALQVL 675 (764)
Q Consensus 667 ~a~~~~~~~ 675 (764)
+..+-+.++
T Consensus 235 ~~~~~i~ev 243 (297)
T PF13170_consen 235 KIVEEIKEV 243 (297)
T ss_pred HHHHHHHHH
Confidence 444444443
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.59 E-value=0.13 Score=39.08 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004269 581 TYTALIKILLDYGDFDEALNLLDLVSLE--GIP---HD-VLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
+|+.+...|...|++++|++.+++..+. ... |+ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555666666666665555421 011 11 2345555555555555555555555543
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.40 E-value=2.2 Score=45.67 Aligned_cols=164 Identities=17% Similarity=0.113 Sum_probs=114.6
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcC-cccc-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCCh
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKE-IGLN-----NKCYLLMMQALCK----GGYLEEASNLIYFLGERYGIYPIL 158 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 158 (764)
.+..++...+-.||-+.+++.+.+..+.+ +... .-.|...+..++. ..+.+.|.++++.+.++ .|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 35667777788899999999888876643 2211 1234444444443 45789999999999866 3676
Q ss_pred hhhHHHH-HHHhccCCHHHHHHHHHHHhhc---CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHH
Q 004269 159 PVYNSFL-GACAKLHSMVHANLCLDLMDSR---MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 159 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
..|...- +.+...|++++|++.|+..... -.+.....+-.+.-.+...+++++|...+..+.+....+...|.-+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 6554433 4456679999999999975532 11223344555666788899999999999999987666666666665
Q ss_pred HHh-hccCCH-------HHHHHHHHHHHH
Q 004269 235 WSF-TRLRDL-------KSAYETLQHMVA 255 (764)
Q Consensus 235 ~~~-~~~g~~-------~~A~~~~~~~~~ 255 (764)
.+| ...|+. ++|.++|.+++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 544 466777 888999988876
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.23 E-value=0.38 Score=45.21 Aligned_cols=89 Identities=9% Similarity=0.081 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHh-----hCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------------HHHH
Q 004269 541 PPNAATYNIMIDCCSI-----IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF----------------DEAL 599 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~-----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~----------------~~A~ 599 (764)
+-|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+=+..-+ +=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4466677777666653 356777778889999999999999999999887553311 2356
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 600 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
+++++|...|+.||..+-..|+.++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 666777767777777766666666655543
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=3.9 Score=39.78 Aligned_cols=150 Identities=10% Similarity=0.005 Sum_probs=81.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 004269 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT----ALIKILLDYGDFDE 597 (764)
Q Consensus 522 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~----~li~~~~~~g~~~~ 597 (764)
.|+..+|-..++++.+. .+-|.......=++|.-.|+.+.-...++++... ..||...|. .+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46666666666666654 3445555555566677777776666666666543 123332222 22233446677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
|++.-++..+-+ +-|.-.-.++...+--.|+..++.++..+-.+. +-..-...|....-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777665432 234444445555555666677766654443221 1111122333344455566777777777764
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.16 E-value=0.23 Score=37.68 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=49.6
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhhc-cCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 306 (764)
.+++.+..+|...|++++|+..|++..+..- .++. ......+++.+...+...
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~a~~~~~lg~~~~~~ 59 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------------------------HPDTANTLNNLGECYYRL 59 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHHHHc
Confidence 4677788888899999999999988876411 1111 011136899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004269 307 QNSGLAEQLMLQMQS 321 (764)
Q Consensus 307 ~~~~~a~~~~~~m~~ 321 (764)
|++++|++.+++..+
T Consensus 60 g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 60 GDYEEALEYYQKALD 74 (78)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988654
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.16 E-value=0.9 Score=46.63 Aligned_cols=62 Identities=16% Similarity=-0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
...++.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|++++|+..|+...+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444555555555555444322 1221 2244444445555555555555444444
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.13 E-value=0.49 Score=40.17 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=61.3
Q ss_pred chhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCC--CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH
Q 004269 47 NEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC 124 (764)
Q Consensus 47 ~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 124 (764)
.|+.+...+-.......+.|++++|++.|+.+...-. +........++.++.+.++++.|...+++.++.+-.....-
T Consensus 5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 3554555555667778889999999999999887642 22334466777888899999999999999998753222344
Q ss_pred HHHHHHHHHc
Q 004269 125 YLLMMQALCK 134 (764)
Q Consensus 125 ~~~li~~~~~ 134 (764)
|-..+.+++.
T Consensus 85 Ya~Y~~gL~~ 94 (142)
T PF13512_consen 85 YAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.02 E-value=1.7 Score=37.00 Aligned_cols=54 Identities=20% Similarity=0.041 Sum_probs=22.5
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+.|++++|++.|+.+..+.+..+- ....-.|+.+|.+.+++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444554444444333221111 112233444444445555555444444443
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.99 E-value=3.7 Score=35.48 Aligned_cols=82 Identities=15% Similarity=-0.089 Sum_probs=38.0
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..+...+.+..++.+++.+...+ +.++..++.++..|++.+ .....+.+.. ..+......+++.|.+.+-+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 444445555566666666555544 244455555555555432 2222233221 11222333344455555555
Q ss_pred HHHHHHHHHH
Q 004269 139 EEASNLIYFL 148 (764)
Q Consensus 139 ~~A~~~~~~m 148 (764)
+++..++..+
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555444
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.95 E-value=3.1 Score=34.49 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhc
Q 004269 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 681 (764)
....++....+|+-+.-.+++..+.. +-.|++....-+..+|.+.|+..++.+++.+.-++|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344445555555555555555543 22444554445555555555555555555555555543
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.73 E-value=1.9 Score=44.32 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.7
Q ss_pred HHCCCCCCHHH
Q 004269 641 HQNKVQPDPST 651 (764)
Q Consensus 641 ~~~~~~p~~~~ 651 (764)
...|+.|+...
T Consensus 404 ~~~gv~~~~~v 414 (453)
T PLN03098 404 ESEGVTPGEDV 414 (453)
T ss_pred HhcCCCCCCce
Confidence 34466665543
No 244
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.58 E-value=4.9 Score=35.52 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=79.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004269 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 643 (764)
.++++.+.+.+++|+...|..+++.+.+.|++..-..++. .++-+|.......+-.+.. ....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4455666677888888888888888888887666544444 4666666655554433322 222333333333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHHHHhhhcchhh
Q 004269 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENL 720 (764)
Q Consensus 644 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (764)
+. ..+..++..+...|++-+|+++.+.... . ........+......+|......+.+.+...+.++
T Consensus 88 -L~---~~~~~iievLL~~g~vl~ALr~ar~~~~--~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~~ 153 (167)
T PF07035_consen 88 -LG---TAYEEIIEVLLSKGQVLEALRYARQYHK--V-----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNLRL 153 (167)
T ss_pred -hh---hhHHHHHHHHHhCCCHHHHHHHHHHcCC--c-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHhh
Confidence 00 1344566788888888888888874321 1 11112334455555566666666666666544333
No 245
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.53 E-value=8.5 Score=38.12 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh--hc----ChhHHHHHHHHHHhc----CCCCHhhHHHHHHHhhccCC-
Q 004269 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVW--QK----NLSAVHEIWEDYIKH----YSLSIFSLRKFVWSFTRLRD- 242 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~- 242 (764)
+.+.+.+++.|.+.|+.-+..+|-+..-.... .. ....+..+|+.|.+. -.++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777888888888777777664433322 22 245777888888874 34555566666554 2332
Q ss_pred ---HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC---HHHHHHHH
Q 004269 243 ---LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN---SGLAEQLM 316 (764)
Q Consensus 243 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~ 316 (764)
.+.+..+|+.+.+.|...+... -+.+-+-++..... ..++.+++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~L------------------------------Q~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDL------------------------------QFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHH------------------------------HHHHHHHHhccccchHHHHHHHHHH
Confidence 3556777777777777665521 22222222222211 34777888
Q ss_pred HHHHHCCCCCCcccHHHHHH
Q 004269 317 LQMQSLGLQPSSHTYDGFIR 336 (764)
Q Consensus 317 ~~m~~~g~~p~~~~~~~ll~ 336 (764)
+.+.+.|+++....|..+.-
T Consensus 206 ~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHcCCccccccccHHHH
Confidence 88888888877777765543
No 246
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.40 E-value=9.2 Score=39.71 Aligned_cols=173 Identities=9% Similarity=0.036 Sum_probs=125.3
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
.++.-+..+..+.-+..+..+|..-| -+...|..++++|..+ ..+.-..+|+++.+..+. |+..-..|..-| ..+
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y-Eki 145 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY-EKI 145 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH-HHh
Confidence 44555667777888888889998876 7778899999999988 567788999999988652 333334444444 448
Q ss_pred CHHHHHHHHHHHhhhcCCCCC------hhhhHHHHHHHhccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhhcCh
Q 004269 137 YLEEASNLIYFLGERYGIYPI------LPVYNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
+-..+..+|..+..+. -|. ...|..|...- ..+.+..+.+...+... |...-.+.+..+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 8888888888775432 221 11455554321 35677777777777643 6666777788888889999999
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
.+|.+++..+.+...-|..+.-.++.-+-
T Consensus 222 ~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 222 TEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 99999999999988888888777776553
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.22 E-value=4.5 Score=42.66 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=52.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
..+.++..+-+.|..+.|+++.+.-. .-.....+.|+++.|.++.+. .++...|..|-...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 35555555556666666655533221 112223345566555554322 22445566666666
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...|+++-|++.+.+.. -+..|+-.|.-.|+.+.-.++.+...+
T Consensus 358 L~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666655432 244555566666666665555555444
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.07 E-value=5.4 Score=34.45 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 513 ~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 592 (764)
..+|..+...+.......+++.+...+ ..+...++.++..|++.+ .+.....+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555566666666666666555 245556666666665542 2223333331 11222233355555555
Q ss_pred CCHHHHHHHHHHH
Q 004269 593 GDFDEALNLLDLV 605 (764)
Q Consensus 593 g~~~~A~~~~~~m 605 (764)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666555554
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=3.5 Score=39.68 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=23.6
Q ss_pred HhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHH
Q 004269 63 LCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 114 (764)
...|+..+|..+|....... +-+...-..+..++...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555544433 1222333344445555555555555555443
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.96 E-value=22 Score=41.24 Aligned_cols=130 Identities=14% Similarity=0.018 Sum_probs=64.9
Q ss_pred HHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHh-hCCcchHHHHHHhccccCCCCCh--
Q 004269 11 QLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGA-- 87 (764)
Q Consensus 11 ~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-- 87 (764)
...+..++..+++.+|+ .+..+.. -.++-...+.|+. +..-+.++.+ .++.+-.-.++..+...++.-+.
T Consensus 681 La~vr~~l~~~~y~~AF-~~~RkhR--idlnii~d~~~~~----Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~ 753 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAF-EVMRKHR--IDLNIIFDYDPKR----FLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYS 753 (1265)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhc--cCccchhhcCHHH----HHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcc
Confidence 44566788899999999 6655441 1123333444443 3333334554 34455555556666544321111
Q ss_pred hcHHHHHHHhhCC----CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC--CHHHHHHHHHHHh
Q 004269 88 DDFFHILNYCARS----PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG--YLEEASNLIYFLG 149 (764)
Q Consensus 88 ~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~ 149 (764)
.++.+-.+.|... .......++......+. .|+ .-...+|.+|++.+ .++.|+....+..
T Consensus 754 ~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 754 STSGSGKQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred ccccccceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111111122211 12223333333333332 455 45557888898887 6777777666654
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.90 E-value=1.8 Score=45.49 Aligned_cols=152 Identities=10% Similarity=0.089 Sum_probs=80.9
Q ss_pred hcCcHHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHH
Q 004269 489 AEGMIRELIQYFCDSKTPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 566 (764)
-.++++++.+.......-| +....+.++.-+-+.|..+.|+++-..-. .- .....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~r----FeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HR----FELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HH----HHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HH----hHHHHhcCCHHHHHHH
Confidence 3456666544443111111 23346667777777777777777643221 11 2334456777777666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004269 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 646 (764)
.+.. .+...|..|.+...+.|+++-|++.|++.. -|..|+--|.-.|+.+.-.++.+.....|-
T Consensus 341 a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 341 AKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp CCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 5432 466677777777777788877777777642 344555556667777776666666655442
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004269 647 PDPSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 647 p~~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
++.-..++.-.|+.++..+++.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHH
Confidence 3333444555566666665554
No 252
>PRK15331 chaperone protein SicA; Provisional
Probab=92.69 E-value=3.1 Score=36.37 Aligned_cols=87 Identities=10% Similarity=-0.006 Sum_probs=48.4
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
+-..|++++|..+|..+.--+.. +..-|..|..++-..+++++|+..|...-..+. -|...+-.+-.++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 33567777777777766543322 223455566666666777777777766544332 233334444455556666666
Q ss_pred HHHHHHHHHh
Q 004269 212 VHEIWEDYIK 221 (764)
Q Consensus 212 a~~~~~~~~~ 221 (764)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6665555443
No 253
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=5.9 Score=39.93 Aligned_cols=80 Identities=8% Similarity=-0.095 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
.+++.+.-++.+.+.+..|++.-+..+..+ ++|....----.++...|+++.|+..|+.+++..+. |..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 488889999999999999999999988765 456667767778899999999999999999986443 333334444443
Q ss_pred Hh
Q 004269 374 SK 375 (764)
Q Consensus 374 ~~ 375 (764)
-+
T Consensus 336 ~k 337 (397)
T KOG0543|consen 336 QK 337 (397)
T ss_pred HH
Confidence 33
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.35 E-value=3.9 Score=38.97 Aligned_cols=106 Identities=14% Similarity=-0.002 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh---hhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-C-ChhhHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP---VYNSFLGACAKLHSMVHANLCLDLMDSRMVG-K-NEVTYT 197 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~ 197 (764)
..|+.-+. +.+.|++..|...|....+++ +-+.. .+-.|..++...|++++|..+|..+.+.-++ | -+.++-
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 36887775 457788999999998887543 22222 5666888899999999999999888775222 2 224555
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHH
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
-|.....+.|+.+.|..+|+++.+.+|....+-.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5556667788888888888888887766655433
No 255
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.16 E-value=8 Score=34.24 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=43.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 358 (764)
.+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..+++-..+++
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 667788888889999998888877532 244445667788888888777777777666654
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.05 E-value=1.7 Score=41.31 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHHhhCCcchHHHHHHhccccCC--CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccC
Q 004269 61 DALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g 136 (764)
.+.+.|++..|...|...++..+ ...+..+-.|.+++...|+++.|..+|..+.+.- .+--+...-.|.....+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 34445555555555555554431 1223334455555555555555555555555431 1112234444455555555
Q ss_pred CHHHHHHHHHHHhhh
Q 004269 137 YLEEASNLIYFLGER 151 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~ 151 (764)
+.++|...|+++.++
T Consensus 230 ~~d~A~atl~qv~k~ 244 (262)
T COG1729 230 NTDEACATLQQVIKR 244 (262)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555544
No 257
>PRK15331 chaperone protein SicA; Provisional
Probab=91.91 E-value=1 Score=39.22 Aligned_cols=90 Identities=9% Similarity=-0.031 Sum_probs=49.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+-..|++++|..+|+-+.-.+ +.+..-+..|..+|-..++++.|...|......+. -|+..+-.....|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 444556677777777777666544 12222222333333344666777777666555442 3333344455566666777
Q ss_pred HHHHHHHHHHhh
Q 004269 139 EEASNLIYFLGE 150 (764)
Q Consensus 139 ~~A~~~~~~m~~ 150 (764)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777776666643
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.67 E-value=8.6 Score=38.00 Aligned_cols=134 Identities=12% Similarity=0.003 Sum_probs=75.3
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 308 (764)
...++..++...+.++.+++.|+...+..-..+++.-. ...|-.|-.-|.+..+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE--------------------------lqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE--------------------------LQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee--------------------------eehhhhHHHHHHHHHh
Confidence 34446666777778888888888877633222221110 1367778888888888
Q ss_pred HHHHHHHHHHHHH----CCCCCCcc-cHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHH----HHHHHHH
Q 004269 309 SGLAEQLMLQMQS----LGLQPSSH-TYDG-----FIRAIVSDRGLRNGMEVLKIMQQNNLK-PQDSTI----ATLSVEC 373 (764)
Q Consensus 309 ~~~a~~~~~~m~~----~g~~p~~~-~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~----~~li~~~ 373 (764)
+++|.-+..+..+ .++. |.. .|.. +--++...|.+.+|.+.-++..+..+. -|..++ ..+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 8888766655433 2211 211 1222 223455677777777777666543211 133333 3455666
Q ss_pred HhcCCHHHHHHHHHHH
Q 004269 374 SKALELDLAEALLDQI 389 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~ 389 (764)
-..|+.+.|+.-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 6666666665555443
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.58 E-value=4.5 Score=33.49 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCC
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF---SGYVNCGF 664 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~g~ 664 (764)
++...|+++.|++.|.+.+.. .+..+..||.=..++.-+|+.++|+.=+++..+..-.-......+.+ ..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344556666666666655532 12345556666666666666666666666555431111222222222 14445566
Q ss_pred hHHHHHHHHH
Q 004269 665 HNSAMEALQV 674 (764)
Q Consensus 665 ~~~a~~~~~~ 674 (764)
-+.|..-|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 6666555553
No 260
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=3.8 Score=41.26 Aligned_cols=66 Identities=11% Similarity=0.006 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++..+.-++.+.+++..|.+.-...+...++|....-.-..++...|+++.|...|+++.+ +.|+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~N 324 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSN 324 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCc
Confidence 4566666788899999999999999888899999988889999999999999999999998 77765
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=15 Score=35.47 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=86.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
-.......|++.+|..+|+...+... -+...--.+..+|...|+.+.|..++..+...--.........-|..+.+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 34466788999999999998876432 2344566788889999999999999998876532222233223344445555
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 257 (764)
+..+..++-..+- ..+.|...-..+...+...|+.+.|.+.+-.+.++.
T Consensus 218 ~~~~~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 218 ATPEIQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred cCCCHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5544444433332 256688888889999999999999998887777643
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=14 Score=34.55 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..|.....+|-...++++|...+.+..+ +...|...|.+ ...++.|.-+.++|... .--..-|.-....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 4555556677777777777776665532 22223222222 12334444445554442 1112233444455
Q ss_pred HHhhcChhHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~ 220 (764)
|...|..+.|-..++..-
T Consensus 101 Y~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHhCCcchHHHHHHHHH
Confidence 666666665555555443
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.21 E-value=43 Score=39.08 Aligned_cols=152 Identities=11% Similarity=0.158 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hhCChhHHHHH
Q 004269 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS----IIRCFKSASAL 566 (764)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a~~~ 566 (764)
++++.|+..+..++ ...|.-.++.--++|.+.+|+.++ +|+...+.-+..+|+ ....+++|--+
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45666666665553 224444555556677777777775 577766666655544 45677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL--YNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
|+..-+ ..--+.+|..+|++.+|+.+..++.. ..|... -..|+.-+...++.-+|-++..+...
T Consensus 962 Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-- 1027 (1265)
T KOG1920|consen 962 YERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-- 1027 (1265)
T ss_pred HHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--
Confidence 765433 12356788888999999988887642 123222 25677888888888888888777652
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004269 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 645 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
.|.. .+..|+++-.|++|+.+...
T Consensus 1028 -d~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1028 -DPEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -CHHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 2222 35567788888888876553
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.15 E-value=0.88 Score=29.81 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=16.1
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHH
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
..+-.+|...|++++|.++++.+++..|.|...+..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 334444444444444444444444444444444333
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.92 E-value=21 Score=35.16 Aligned_cols=163 Identities=15% Similarity=0.056 Sum_probs=96.7
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhc--------HHHHHHHhhCCCChhHHHHHHHHHHHc----C----cccc----
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADD--------FFHILNYCARSPDPLFVMETWRMMEEK----E----IGLN---- 121 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~m~~~----~----~~~~---- 121 (764)
..++|+.+.|..++.+........++.. |+.-...+.+..+++.|...+++..+. + ..|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3468899999999988775431223322 455455554433777776666655432 1 2232
Q ss_pred -HHHHHHHHHHHHccCCHH---HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHH
Q 004269 122 -NKCYLLMMQALCKGGYLE---EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197 (764)
Q Consensus 122 -~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 197 (764)
..+...++.+|...+..+ +|.++++.+....|-+ ..++-.-+..+.+.++.+.+.+++..|...- .-....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 246677788888777654 5666666664433332 3355556667777899999999999999862 21334455
Q ss_pred HHHHHHHh--hcChhHHHHHHHHHHh-cCCCCH
Q 004269 198 ELLKLAVW--QKNLSAVHEIWEDYIK-HYSLSI 227 (764)
Q Consensus 198 ~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~ 227 (764)
.++..+.. ......+...+..+.. .+.|..
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 55554422 2334556666666654 344444
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.80 E-value=1.3 Score=28.99 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004269 582 YTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
|..+...|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555555555543
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.79 E-value=4.1 Score=39.40 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPSTCHF 654 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 654 (764)
.++..++..+..+|+.+.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346667778888888888888888887543 34777888888888888888888888887764 477777766544
Q ss_pred HHH
Q 004269 655 VFS 657 (764)
Q Consensus 655 ll~ 657 (764)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.56 E-value=18 Score=33.93 Aligned_cols=197 Identities=16% Similarity=0.084 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004269 477 HISMKNLLKALGAEGMIRELIQYFCDSK----TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
...+......+...+.+..+...+.... .......+......+...+....+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455566777778888888877776642 233445666677777778888999999998887543331 22222222
Q ss_pred -HHHhhCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 004269 553 -CCSIIRCFKSASALVSMMVRDGF--YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKG 628 (764)
Q Consensus 553 -~~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 628 (764)
.+...|+++.+...+........ ......+......+...++.++|...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 67888999999999998865321 1233444444555677889999999999988542 22 3677888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 629 RIDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+.+.|...+..... ..|+ ...+..+...+...|.++++...++....
T Consensus 217 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998885 3444 33444444455577778888887775543
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.20 E-value=9.8 Score=37.21 Aligned_cols=119 Identities=8% Similarity=-0.107 Sum_probs=90.0
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh--hHHHHHH--HHHhhc
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV--TYTELLK--LAVWQK 207 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~--~~~~~~ 207 (764)
+-..|+..+|-..++++.+. .|.|...++-.=.+|.-+|+.......++.+... ..||.. +|..=+- ++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34567888888888888754 4667777887888888899998888888887654 234443 3322222 334678
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHH
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (764)
-+++|++.-++..+-.+.|..+-.++.+++--.|++.++.++..+-
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 8999999999888888889999999999999999999998886654
No 270
>PRK11906 transcriptional regulator; Provisional
Probab=89.19 E-value=18 Score=37.60 Aligned_cols=131 Identities=9% Similarity=-0.038 Sum_probs=74.6
Q ss_pred hhh--HHHHHHHhcc-----CCHHHHHHHHHHHhhc-CCCCChh-hHHHHHHHHHh---------hcChhHHHHHHHHHH
Q 004269 159 PVY--NSFLGACAKL-----HSMVHANLCLDLMDSR-MVGKNEV-TYTELLKLAVW---------QKNLSAVHEIWEDYI 220 (764)
Q Consensus 159 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~---------~~~~~~a~~~~~~~~ 220 (764)
..| ...+++.... .+.+.|+.+|.+.... .+.|+-. .|..+-.++.. ..+..+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 355 5666665542 3456788888887722 3455443 33222222211 122335555555555
Q ss_pred hcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHH
Q 004269 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
+..+.|+.+...+..+..-.++++.|..+|++... +.|+.. .+|....
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A------------------------------~~~~~~~ 379 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIA------------------------------SLYYYRA 379 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccH------------------------------HHHHHHH
Confidence 56677777777777766666777777777777766 555541 3444444
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 004269 301 HACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~ 321 (764)
..+.-.|+.++|.+.+++..+
T Consensus 380 ~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 380 LVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHcCCHHHHHHHHHHHhc
Confidence 444556777777777776544
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.85 E-value=17 Score=36.14 Aligned_cols=129 Identities=6% Similarity=-0.008 Sum_probs=67.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPS---SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN-----LKPQDST 365 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 365 (764)
+|-.+.+++-+.-++.+++.+-..-... |..|. .....++-.+....+.++.+++.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555555555555555555544433321 22221 1223345566667777788888777766532 2223346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCcc-H-----HHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCT------NPKP-F-----SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~-~-----~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
+..|-..|.+..|.++|.-+.....+.. |... | -.|.-++-..|+.-.|.+..++..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 6777777777777777765544433211 1111 1 1233445556666666666655443
No 272
>PRK11906 transcriptional regulator; Provisional
Probab=88.57 E-value=19 Score=37.50 Aligned_cols=123 Identities=9% Similarity=-0.033 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHh---------ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 137 YLEEASNLIYFLGERYGIYPILP-VYNSFLGACA---------KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
..+.|..+|.+......+.|+-. .|..+..++. ...+..+|.++-+...+.+.. |..+...+-.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 35677777887764344455433 2222222211 123455666777776665433 677777776666777
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++++.+...|++...-.|....+|........-+|+.++|.+.+++..+ ..|..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~ 405 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRR 405 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchh
Confidence 8899999999998887777778888877788888999999999999776 55543
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.51 E-value=6.8 Score=35.39 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHF 654 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ 654 (764)
..+..+.+.|++.|+.++|.+.+.++.+....+.. ..+-.+|..+...+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45677888888889999999998888775444433 35677788888888888888887776642 21122111111
Q ss_pred HHH--HHHhcCChHHHHHHHH
Q 004269 655 VFS--GYVNCGFHNSAMEALQ 673 (764)
Q Consensus 655 ll~--~~~~~g~~~~a~~~~~ 673 (764)
... .+...|++.+|-+.|-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 122 3345677777776664
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.33 E-value=3.6 Score=32.02 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+.+-++.+....+-|++.+..+.+++|.+.+|+..|.++++-.+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444455666666666666666666666666666665553
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.96 E-value=18 Score=31.85 Aligned_cols=135 Identities=9% Similarity=0.004 Sum_probs=71.5
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhH
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP-VYN 162 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ 162 (764)
.+...|..-|+.. +.+..++|+..|..+.+.|...-+. ..-......+..|+-..|...|+++..... .|-.. -..
T Consensus 57 ~sgd~flaAL~lA-~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~A 134 (221)
T COG4649 57 KSGDAFLAALKLA-QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLA 134 (221)
T ss_pred cchHHHHHHHHHH-HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHH
Confidence 3445566655543 4455667777777777665433222 222334455666777777777777653221 12211 011
Q ss_pred HHH--HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 163 SFL--GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 163 ~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.|= -.+..+|.++....-.+-+...+-..-...-..|--+-.+.|++..|.+.|..+..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 111 12345677766666666555444333333444454455567777777777777665
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.34 E-value=9.9 Score=30.03 Aligned_cols=58 Identities=7% Similarity=0.057 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 656 (764)
..+-++.+....+-|++.+..+.+++|.+.+++..|.++++-.+.+ +.+....|..++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 3444455555566677777777777777777777777777666542 222222554444
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.10 E-value=5.3 Score=38.71 Aligned_cols=76 Identities=12% Similarity=-0.067 Sum_probs=48.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh-----cCCCCChhhHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVTYTE 198 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 198 (764)
++..++..+...|+++.+...++++...+ +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45556666667777777777777765543 33556677777777777777777777766654 356665555444
Q ss_pred HHH
Q 004269 199 LLK 201 (764)
Q Consensus 199 ll~ 201 (764)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.06 E-value=34 Score=35.87 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 363 DSTIATLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
..+-..+..++-+.|+.++|.+.|.++.+.. .......|+.++...+.+.++..++.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3334456666777788888888888876532 223556778888888888888888887654
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.56 E-value=26 Score=38.59 Aligned_cols=117 Identities=12% Similarity=0.005 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHH-HhccCCHHHHHHHHHHHhh-------cCCCCChhhHHHHHHHHHhhc--
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMDS-------RMVGKNEVTYTELLKLAVWQK-- 207 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 207 (764)
...|.++++...+...+.+-...-.....+ +....|.+.|+..|+.+.. .| ......-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777765543222222222223333 5566788888888888766 33 2223444444444422
Q ss_pred ---ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc-cCCHHHHHHHHHHHHHhh
Q 004269 208 ---NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKSAYETLQHMVALA 257 (764)
Q Consensus 208 ---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~ 257 (764)
+.+.|..++....+...|+....-..+..... ..+...|.++|....+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 44556666665555444444444333333332 234556666666665544
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.34 E-value=7.3 Score=37.68 Aligned_cols=103 Identities=8% Similarity=0.029 Sum_probs=55.5
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC--CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh
Q 004269 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV 194 (764)
Q Consensus 117 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (764)
|.+.+..+...++..-.....++.++..+-.++.... ..|+. +-.+.++.+. .-+.++++.++..=.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3344444445555544455566666666655543110 01111 1122333333 234556666666666667777777
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
+++.+|+.+.+.+++..|.++...++.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777766666655554
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.02 E-value=0.78 Score=28.02 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
|++.++..|.+..+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555667888889999999999999998885
No 282
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.91 E-value=12 Score=31.15 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=37.9
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+..|+++.|.+.|.+.+.-.|....+||.-..++--.|+.++|+.-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 45567777777777776666667777777777777777777777777777666
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.88 E-value=2 Score=26.57 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~ 639 (764)
..|...|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.71 E-value=25 Score=31.08 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH-HHHHH--
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM-TYTAL-- 585 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~l-- 585 (764)
..|...+. +++.+..++|+.-|.++.+.|..--.+. -..+-......|+...|...|+++-+....|-+. -..-|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 3566788899999999888775422221 1112233556788888889998888765445433 11111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
...+...|.++....-.+.+...+-+.-...-..|--+..+.|++..|.+.|..+......|...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 22345678888887777776544433344455667777778888888888888887654555443
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.51 E-value=7.3 Score=35.21 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=39.3
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 308 (764)
.+..+...|++.|+.+.|.+.|.++.+....+... ...+-.+|+.....++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----------------------------id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----------------------------IDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----------------------------HHHHHHHHHHHHHhCC
Confidence 45556667777777777777777766643333221 1355566677777777
Q ss_pred HHHHHHHHHHHHH
Q 004269 309 SGLAEQLMLQMQS 321 (764)
Q Consensus 309 ~~~a~~~~~~m~~ 321 (764)
+..+.....+...
T Consensus 89 ~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 89 WSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666543
No 286
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.37 E-value=68 Score=35.88 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=39.7
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---c
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLD---Y 592 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~---~ 592 (764)
..+.-.|++|.|++.+-+ ..+...|.+.+.+.+..|.-.+-.+... ..+.... -.|...-+..||..|++ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888888888776 2234556666666666544332222211 2222110 11222557778888876 3
Q ss_pred CCHHHHHHHHHHHHH
Q 004269 593 GDFDEALNLLDLVSL 607 (764)
Q Consensus 593 g~~~~A~~~~~~m~~ 607 (764)
.+..+|.+++--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 567778887776654
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.13 E-value=5.4 Score=38.54 Aligned_cols=108 Identities=10% Similarity=0.151 Sum_probs=74.4
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
|.+.+..+...++..-....+++.+...+-++.. .|+.-.- ++ ++-.+.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRh---s~~a~~~-----------------------~~---~~~~~~ir 109 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRH---SPNAWYL-----------------------RN---WTIHTWIR 109 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhc---Ccchhhh-----------------------cc---ccHHHHHH
Confidence 4555566666666666667778888777766654 2221000 00 13333344
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
.+. .-++++++.++..=.+.|+-||.++++.+|..+.+.+++.+|.++..+|+....
T Consensus 110 lll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 110 LLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 433 345778999998888999999999999999999999999999998888876543
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.04 E-value=1.7 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=18.8
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
++..|..+|.+.|++++|..+|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777788888888888877554
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.67 E-value=27 Score=30.61 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=8.1
Q ss_pred HHccCCHHHHHHHHHHH
Q 004269 132 LCKGGYLEEASNLIYFL 148 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m 148 (764)
+...|+|.+|+.+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33444555555555544
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.62 E-value=33 Score=31.58 Aligned_cols=160 Identities=13% Similarity=0.006 Sum_probs=91.7
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
+..||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +--.|+++-|.+-|...-+.+.-.|=...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 45688887778888999999999998888763323233333332 33568888888877777665544343333433332
Q ss_pred HHhccCCHHHHHHHH-HHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC-------HhhHHHHHHHhh
Q 004269 167 ACAKLHSMVHANLCL-DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS-------IFSLRKFVWSFT 238 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~-~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~li~~~~ 238 (764)
+.-+..+|..-+ ++... .|..-|...|-.+. .|.+. .+.+++.+......+ ..+|--|..-+.
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 223455554433 33322 23333333332221 11111 123333333322211 346778888899
Q ss_pred ccCCHHHHHHHHHHHHHh
Q 004269 239 RLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~ 256 (764)
..|+.++|..+|+.....
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999999988763
No 291
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.51 E-value=29 Score=33.71 Aligned_cols=125 Identities=13% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHH-cCccccHHHHHHHHHHHHc-cC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEE-KEIGLNNKCYLLMMQALCK-GG-YLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
|..++. ++..+.+|+.+|+.... ..+--|..+-..+++.... .+ ....--++.+-+....+-.++..+--.+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 22334445555542221 1233455555555555543 11 122222222333222333455555566666
Q ss_pred HHhccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.+++.+++.+-.++.+..... ++..|...|...|+.....||..-...+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666666666666666555443 455566666666666666666655555444
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.88 E-value=38 Score=31.69 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=45.1
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHH-H
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW-S 236 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~-~ 236 (764)
..+......+...+++..+...+...... ........+......+...+++..+...+.......+.+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34455555555555555555555554431 122233334444444444455555555555544432222222222222 4
Q ss_pred hhccCCHHHHHHHHHHHH
Q 004269 237 FTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~ 254 (764)
+...|+++.|...+....
T Consensus 140 ~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 140 LYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 556666666666666653
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.73 E-value=8.9 Score=29.94 Aligned_cols=48 Identities=8% Similarity=-0.070 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++.+..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334455555555566677777777777777777777777777776553
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.55 E-value=1.4 Score=26.92 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=14.4
Q ss_pred cccHHHHHHHHHHHHccCCHHHHH
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345556666666666666666654
No 295
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.25 E-value=8.2 Score=30.47 Aligned_cols=45 Identities=9% Similarity=-0.034 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
..+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445555666666666666666666666666555543
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.46 E-value=51 Score=30.84 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=16.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC
Q 004269 300 IHACGRTQNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 300 i~~~~~~~~~~~a~~~~~~m~~~g~ 324 (764)
...-+..+++.+|+++|++.....+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556778888888888766543
No 297
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.86 E-value=1e+02 Score=34.01 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=56.9
Q ss_pred HHcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhhC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 520 VEAQESHRAMEIFKQMKT-------CGIPPNAATYNIMIDCCSIIR-----CFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 520 ~~~~~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
....+.+.|+.+|+.+.+ .|. ......+-.+|.+.. +.+.|..++....+.|. |+....-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 344566666666666655 331 223333344444322 45556666666666653 33332221111
Q ss_pred HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCC
Q 004269 588 ILLD-YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC--EKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 588 ~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~ 644 (764)
.... ..+...|.++|...-..|. ++...+.++.-... ...+.+.|..++++.-+.|
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 1111 1245667777776665553 22222222221111 2335666666666666655
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.54 E-value=42 Score=35.97 Aligned_cols=99 Identities=16% Similarity=0.036 Sum_probs=47.5
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 4455666655544331 334566666666666666666666555443 233444444445444333
Q ss_pred HHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHH
Q 004269 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (764)
.+-....+....+.. .-+|...|+++++.+++..-
T Consensus 713 ~la~~~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 333333332222221 12344556666666665543
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.01 E-value=1.1e+02 Score=34.04 Aligned_cols=55 Identities=7% Similarity=-0.063 Sum_probs=28.4
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+.+.+.+.+++|..+-+......+. -......+|..+...|+.++|-...-.|..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 3344455555555544433322111 234455566666666777776666655543
No 300
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.90 E-value=14 Score=33.85 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=28.3
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
++.+.+.+.+.++....+.-++..|.|......++..++-.|++++|..-++...+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 33444444455555554444444444555555555555555555555555544443
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.65 E-value=5.3 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=20.9
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777778888888888888888777
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.65 E-value=6.6 Score=23.61 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=10.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004269 617 YNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
|..+...|...|++++|+..+++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3333444444444444444444443
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.95 E-value=58 Score=33.81 Aligned_cols=124 Identities=8% Similarity=-0.040 Sum_probs=77.0
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccC
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
...||+-.|-+-+....+..+.++.........+...|+++.+...+....+.--..+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~---------------------- 357 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD---------------------- 357 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----------------------
Confidence 3467776666666666665555555555555566777888888777766554211111
Q ss_pred CccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004269 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 360 (764)
.+-..+++...+.|+++.|..+-.-|....++ |..............|-++++...|+.+...+.+
T Consensus 358 ----------~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 358 ----------STLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ----------hHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 36667788888888888888888888766554 3333222222334556777887777777655433
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.93 E-value=51 Score=28.92 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF-IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
.++..-.+.++.+.+..++.-|.-. .|.......+ ...+...|+|.+|..+|+++.... |.......|+..|...
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 3344556778888888888888764 5655444332 223567888888888888877654 2333344555444443
No 305
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.82 E-value=74 Score=32.46 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccC----
Q 004269 7 RTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH---- 82 (764)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~---- 82 (764)
|..+.-+.+-|...|+++.|+|.+.+ + |-|=|.. .-....+...|......|+|......-.+..+..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR-~---RdYCTs~----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSR-A---RDYCTSA----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhh-h---hhhhcch----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 45666677889999999999954444 3 5555553 3356677778888888999999888887776541
Q ss_pred -----CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc--C----ccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004269 83 -----HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK--E----IGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 83 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 150 (764)
+++....+..+...+. +++..|...|-..... + +.| |..+|. .+.+++--++-+--+.+.....-
T Consensus 222 ~~~q~v~~kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~F 298 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESF 298 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhh
Confidence 2223333444444333 3565555544333221 1 223 344443 33444443333222222211110
Q ss_pred hcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 151 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+.-.......+..+..-| .+++...++++++++..
T Consensus 299 k~flel~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 299 KLFLELEPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hhHHhcChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 000111222344443333 35778888888887654
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.55 E-value=26 Score=31.97 Aligned_cols=80 Identities=14% Similarity=-0.005 Sum_probs=52.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCC
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCGF 664 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~ 664 (764)
.+.+.|+ ++|.+.|-.+...+.--++.....|..-|. ..|.++++.++-+.++. +-.+|+..+.+|.+.|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 567777777766554445555555555444 55778888887777663 336677778888888888888
Q ss_pred hHHHH
Q 004269 665 HNSAM 669 (764)
Q Consensus 665 ~~~a~ 669 (764)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77763
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=75.63 E-value=7.2 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=19.0
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566677778888888888887776
No 308
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.48 E-value=2.5e+02 Score=36.14 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=88.5
Q ss_pred HHHhhcChhHHHHHHHHHHhc---CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccC
Q 004269 202 LAVWQKNLSAVHEIWEDYIKH---YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (764)
+-.+.+.+..|.-.++..... .......|-.+...|..-+++|....+...-.. .|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~------------------ 1450 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP------------------ 1450 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc------------------
Confidence 334455666666666663111 111223344455577778887777666553111 11
Q ss_pred CCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
+....|......|+++.|...|+++.+.+ |+ ..+++-++......+.++...-..+-....
T Consensus 1451 ----------------sl~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~ 1512 (2382)
T KOG0890|consen 1451 ----------------SLYQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN 1512 (2382)
T ss_pred ----------------cHHHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc
Confidence 33345556667888989999999988763 44 667777777777777777666544433322
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 004269 358 NLKPQDSTIA-TLSVECSKALELDLAEALLDQISRCTNPKPFSAF 401 (764)
Q Consensus 358 ~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 401 (764)
..+....++ .=+.+-.+.++++..+.... .. +...|.+.
T Consensus 1513 -~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~-n~e~w~~~ 1552 (2382)
T KOG0890|consen 1513 -RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DR-NIEYWSVE 1552 (2382)
T ss_pred -cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc-cccchhHH
Confidence 222233232 23334466777777766655 22 55666554
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.45 E-value=7.5 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 004269 581 TYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444555555555555555555544
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=75.02 E-value=8.4 Score=22.99 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 004269 619 TILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
.+...+...|++++|++.+++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33334444444444444444443
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.97 E-value=55 Score=28.28 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=57.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004269 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF-IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 379 (764)
..-...++++++..+++.|.-. .|+..-...+ ...+...|+|.+|.++|+++.+.+..+ ..-..|+..|....
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~--p~~kAL~A~CL~al-- 91 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP--PYGKALLALCLNAK-- 91 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc--hHHHHHHHHHHHhc--
Confidence 3344577888888888888763 4554433222 223557788888888888877765331 11222332222211
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 380 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.-..|..........+...++..+.+.+..
T Consensus 92 --------------~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 92 --------------GDAEWHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred --------------CChHHHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 233455555555556666666666666554
No 312
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=74.50 E-value=1.2e+02 Score=32.05 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 004269 582 YTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP--STCHFVF 656 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll 656 (764)
-..+..++-+.|+.+||.+.+++|.+. ....+..+...|+.++...+.+.++..++.+.-+.. .|.. .+|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHH
Confidence 345666777889999999999999753 222234577889999999999999999998875432 2333 3455444
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.83 E-value=16 Score=38.81 Aligned_cols=134 Identities=10% Similarity=-0.019 Sum_probs=90.6
Q ss_pred hhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCCh
Q 004269 8 TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA 87 (764)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 87 (764)
+....++.-+-++|.+++|+ ++ .-.|+ ....-..+.|+++.|.++..+. -+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL-~~--------------s~D~d-------~rFelal~lgrl~iA~~la~e~------~s~ 666 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQAL-EL--------------STDPD-------QRFELALKLGRLDIAFDLAVEA------NSE 666 (794)
T ss_pred hhhhhHHhHhhhccchHhhh-hc--------------CCChh-------hhhhhhhhcCcHHHHHHHHHhh------cch
Confidence 34556667777788888887 22 11111 1133366789999998887664 344
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 167 (764)
.-|..|..+....+++..|.+.|.+... |..|+-.+...|+.+....+-.... +.|. .|.-..+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~-~~g~------~N~AF~~ 730 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK-KQGK------NNLAFLA 730 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH-hhcc------cchHHHH
Confidence 5689999999999999999999887654 4466777778888776655555443 3442 2444456
Q ss_pred HhccCCHHHHHHHHHHHh
Q 004269 168 CAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~ 185 (764)
|...|+++++++++..-.
T Consensus 731 ~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 731 YFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHcCCHHHHHHHHHhcC
Confidence 667899999998886643
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.58 E-value=9.3 Score=24.15 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 615 LLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 615 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 315
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.29 E-value=94 Score=30.23 Aligned_cols=148 Identities=11% Similarity=-0.012 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH-------hhh------------------cCCCCChh
Q 004269 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL-------GER------------------YGIYPILP 159 (764)
Q Consensus 105 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~------------------~~~~~~~~ 159 (764)
.|+++|..+..+.. -+.+-..+|.++-...+..+|...|... ..+ .++..|+.
T Consensus 151 KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~ 228 (361)
T COG3947 151 KALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQ 228 (361)
T ss_pred HHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHH
Confidence 68889988887632 2334445677777777777776655432 110 12344555
Q ss_pred hhHHHHHHHhc-cCCHHHHHHHHHHHhhcCCCCCh-----------------hhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 160 VYNSFLGACAK-LHSMVHANLCLDLMDSRMVGKNE-----------------VTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 160 ~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~-----------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
-|.+.++..-+ +-.++++.++....+.. .-|+. .++....+.|...|.+.+|.++.+....
T Consensus 229 e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 229 EYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Confidence 66666665433 34466776666655332 22221 1344556678899999999999999999
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
-.+.+...+-.|+..+...||--.|.+-++.+.+
T Consensus 308 ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 308 LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9999999999999999999998888888887764
No 316
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.02 E-value=61 Score=34.22 Aligned_cols=7 Identities=0% Similarity=-0.344 Sum_probs=3.1
Q ss_pred HccCCHH
Q 004269 304 GRTQNSG 310 (764)
Q Consensus 304 ~~~~~~~ 310 (764)
+..|+.+
T Consensus 143 ~~~~~~~ 149 (413)
T PHA02875 143 VMMGDIK 149 (413)
T ss_pred HHcCCHH
Confidence 3445443
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.02 E-value=1.1 Score=39.02 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=20.8
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004269 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (764)
+.+.+..+....+++.+...+..-+....+.++..|++.++.++.+++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444444443333334444444444444444444444433
No 318
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.93 E-value=1.7e+02 Score=32.73 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=23.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
+|--|.|.|++++|.++.....+. .......+...++.+...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 445566777777777776444432 344455566666666554
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.53 E-value=42 Score=30.68 Aligned_cols=71 Identities=8% Similarity=-0.105 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 004269 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE---GIPHDVLLYNTILKKACEKGRIDVI 633 (764)
Q Consensus 562 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a 633 (764)
.|++.|-.+...+.--++.....|...|. ..+.++|..++.+..+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444443334444444444444 23445555555554431 1244555555555555555555544
No 320
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.48 E-value=1e+02 Score=30.01 Aligned_cols=116 Identities=13% Similarity=0.208 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-hC-ChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004269 523 QESHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSI-IR-CFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGDFDEA 598 (764)
Q Consensus 523 ~~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~-~g-~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~~~A 598 (764)
....+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..+++.+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 344567777773322 2344566777777776654 22 233334444444432 4567777777888888888888888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004269 599 LNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIE 638 (764)
Q Consensus 599 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 638 (764)
.++++..... +...|...|..+|..-...|+..-..++.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8888877653 445578888888888888888777666554
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.42 E-value=2.9 Score=36.32 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=48.0
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004269 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
.+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|-+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--------SSS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--------cccCHHHHHHHHHhc
Confidence 345555566666666667776666554455666777777777776666666655511 112234455555666
Q ss_pred CCHHHHHHHHHHH
Q 004269 172 HSMVHANLCLDLM 184 (764)
Q Consensus 172 g~~~~A~~~~~~m 184 (764)
|-+++|.-++..+
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 6666666655543
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.12 E-value=1.8e+02 Score=32.62 Aligned_cols=165 Identities=9% Similarity=-0.033 Sum_probs=71.7
Q ss_pred HHHHHHHhh-CCCChhHHHHHHHHHHHcCccccH-----HHHHHHHHHHHccCCHHHHHHHHHHHhhhcC---CCCChhh
Q 004269 90 FFHILNYCA-RSPDPLFVMETWRMMEEKEIGLNN-----KCYLLMMQALCKGGYLEEASNLIYFLGERYG---IYPILPV 160 (764)
Q Consensus 90 ~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~ 160 (764)
+..+...+. ...+.+.|...+++....--.++. .....++..|.+.+... |...+++..+... ..+-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 333444433 345666666666655432211111 11223444444444433 6666655433211 1111222
Q ss_pred hHHH-HHHHhccCCHHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHh--hcChhHHHHHHHHHHh---c-------CC
Q 004269 161 YNSF-LGACAKLHSMVHANLCLDLMDSRM---VGKNEVTYTELLKLAVW--QKNLSAVHEIWEDYIK---H-------YS 224 (764)
Q Consensus 161 ~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~---~-------~~ 224 (764)
|.-+ +..+...++...|.+.++.+...- ..|-...+..++.+... .+..+.+.+....+.. + ..
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 3333 222222356666666666554431 23334444444444432 2333444444444422 1 13
Q ss_pred CCHhhHHHHHHHh--hccCCHHHHHHHHHHHHH
Q 004269 225 LSIFSLRKFVWSF--TRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 225 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~ 255 (764)
|...+|..+++.+ ...|+++.+...++.+.+
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555544 355666666555555443
No 323
>PF13934 ELYS: Nuclear pore complex assembly
Probab=71.01 E-value=61 Score=30.69 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=12.6
Q ss_pred ccchhhHHHHHHHHhhcccchh
Q 004269 4 PLLRTRFQLIADSFCKSKFHKH 25 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~ 25 (764)
|.+-..++.+++.++..+--..
T Consensus 23 P~s~~~L~~Ll~~i~~~~~~~~ 44 (226)
T PF13934_consen 23 PKSDNDLRALLDLILSSNVSLL 44 (226)
T ss_pred ccCHHHHHHHHHHHhcCCcCHH
Confidence 4444566777776666554333
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.29 E-value=1.3e+02 Score=30.68 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=28.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP---SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
+|..+.+.+-+.|+++.|...+.++...+... +......-.+.+-..|+-.+|...++...+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555432111 112222223334445555555555555444
No 325
>PRK09687 putative lyase; Provisional
Probab=69.87 E-value=1.2e+02 Score=29.95 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=49.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR-CFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 592 (764)
..+.++.+.++ .+++..+-.+.+ .+|...-...+.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 34444444443 334444444443 233333333334444332 12234444433332 23444444555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
|+ .+|...+-+..+.+ + .....+.++...|+. +|...+.++.+
T Consensus 220 ~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 220 KD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55 33444444443321 1 123455555555553 45555555553
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.71 E-value=69 Score=28.74 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004269 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 360 (764)
+++|.+.|++... ..|+...|+.-+..+ .+|-+++.++.+++..
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 4556666666655 478999998888765 3577788888777644
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.19 E-value=31 Score=31.78 Aligned_cols=53 Identities=13% Similarity=-0.069 Sum_probs=22.4
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH
Q 004269 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 183 (764)
++.+.+.+++.+|+...+.-.+.. +.|...-..++..|+-.|++++|..-++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 344444444555544443332211 22333344444444555555555444433
No 328
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=68.62 E-value=1.8e+02 Score=31.53 Aligned_cols=127 Identities=8% Similarity=0.038 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR-AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 372 (764)
..|+++|..--...+.+.+..+++.++.. .|..+-|-.-.. .=.+.|..+.+..+|++-+.. ++.....+..+...
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 47888887666666677788888888864 577665544333 334788999999999998763 54455555544443
Q ss_pred H-HhcCCHHHHHHHHHHHhhCC-----CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 373 C-SKALELDLAEALLDQISRCT-----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 373 ~-~~~g~~~~a~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
+ ...|+.+...+.|+...... ....|...|.--..++++.....+++...+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 3 35688888888888877643 666799999888899999999999999887
No 329
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.29 E-value=67 Score=31.00 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=36.5
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 004269 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE---- 626 (764)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 626 (764)
|.+++..+++.+++...-..-+.--+..+.+...-|-.|.+.|.+..+.++-.......-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 3445555555554444332222211112222333344455555555555555555432222222334444444432
Q ss_pred -cCCHHHHHHHH
Q 004269 627 -KGRIDVIEFII 637 (764)
Q Consensus 627 -~g~~~~a~~~~ 637 (764)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 330
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.16 E-value=1.2e+02 Score=29.56 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCHHHH
Q 004269 398 FSAFLAACDTMDKPERA 414 (764)
Q Consensus 398 ~~~li~~~~~~~~~~~a 414 (764)
|.-|+.+++..|+.+-.
T Consensus 324 yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhHHHHHHhcCChHHHH
Confidence 55555555555554443
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.46 E-value=8.3 Score=21.66 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=10.2
Q ss_pred HHHHHHHccCCHHHHHHHHH
Q 004269 127 LMMQALCKGGYLEEASNLIY 146 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~ 146 (764)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 332
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.22 E-value=44 Score=27.69 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=28.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 601 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
-++.+....+-|++.+...-+++|.+-+|+..|.++|+-.+.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444456667777777777777777777777777776654
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.97 E-value=14 Score=22.10 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=20.1
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+|..+...|...|+++.|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677788888888888887776
No 334
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.61 E-value=94 Score=26.85 Aligned_cols=93 Identities=9% Similarity=0.056 Sum_probs=60.7
Q ss_pred HHcCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhcC----CCCChhhhHHHHHHHhccCC-HHHHHHHHHHHhh
Q 004269 114 EEKEIGLNN--KCYLLMMQALCKGGYLEEASNLIYFLGERYG----IYPILPVYNSFLGACAKLHS-MVHANLCLDLMDS 186 (764)
Q Consensus 114 ~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 186 (764)
.+.+..++. ...++++.-.+..+++.....+++.+..-.+ -..+...|+.++++.++... --.+..+|.-|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 3456677666777777777777766632110 01234478888888876666 4566778888888
Q ss_pred cCCCCChhhHHHHHHHHHhh
Q 004269 187 RMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+.+++..-|..+++++.+-
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 78888888888888877654
No 335
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.93 E-value=1.5e+02 Score=28.81 Aligned_cols=164 Identities=15% Similarity=0.039 Sum_probs=86.9
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCChhh-------HHHHHHHHHhhcChhHHHHHHHHHHh---c--CCCCHhhHHH
Q 004269 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVT-------YTELLKLAVWQKNLSAVHEIWEDYIK---H--YSLSIFSLRK 232 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~ 232 (764)
.+-..+.+++++|+..+.++...|+..|..+ ...+.+.|...|+.....+......+ . -+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3444556667777777777766666655443 34456666677766544443332221 1 2233444555
Q ss_pred HHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH
Q 004269 233 FVWSFTR-LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 233 li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 311 (764)
|+..+-. ...++.-+++.....+...+.....-+ ...=.-++..+.+.|++.+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr--------------------------~~Le~Kli~l~y~~~~Ysd 143 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLR--------------------------LELECKLIYLLYKTGKYSD 143 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHhcccHHH
Confidence 5555433 234555555555554432222210000 0123457888999999999
Q ss_pred HHHHHHH----HHHCCCCCCcccHHHHH-HHHHhcCChhHHHHHHHHH
Q 004269 312 AEQLMLQ----MQSLGLQPSSHTYDGFI-RAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 312 a~~~~~~----m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~ 354 (764)
|+.+... +.+..-+|+..+...+= .+|-..+++.++..-+...
T Consensus 144 alalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 144 ALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 9876544 45555566766654443 2455555555555444433
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.54 E-value=45 Score=27.64 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
+..+-++......+.|+.......+++|.+.+|+..|.++++.+....
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 334445555566677777777777778877888887777777765433
No 337
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=62.30 E-value=1.3e+02 Score=27.84 Aligned_cols=165 Identities=8% Similarity=-0.131 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH--hccCCHHHHHHHHHHHhhcCCC-CChhhHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC--AKLHSMVHANLCLDLMDSRMVG-KNEVTYT 197 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~ 197 (764)
-+.+||.|.--+...|+++.|.+.|+...+-+ |. .-|..+=++. ---|+++-|.+-|...-+.... |-...|-
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC---Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 45688888888889999999999999887542 22 2333333332 2358888888777766654322 2222222
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHH-HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW-SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
-+. ...-+..+|..-+.+-.++. |..-|...|- .|...-.. ..+|+.+.+- ...+..
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~-a~~n~~------------- 231 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYLGKISE---ETLMERLKAD-ATDNTS------------- 231 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHHhhccH---HHHHHHHHhh-ccchHH-------------
Confidence 221 22334445544333322222 2222222222 22211111 2233333331 111110
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
-..+.+.+|--|.+.+...|+.++|..+|+-....
T Consensus 232 -----------~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 232 -----------LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -----------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 00111357888888888888888888888877754
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.28 E-value=15 Score=24.06 Aligned_cols=20 Identities=10% Similarity=-0.232 Sum_probs=8.7
Q ss_pred HHhhCCCChhHHHHHHHHHH
Q 004269 95 NYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~ 114 (764)
++|...|+.+.|++++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=61.36 E-value=27 Score=34.35 Aligned_cols=45 Identities=24% Similarity=0.064 Sum_probs=21.0
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHH
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 178 (764)
-|.++|.+++|+..+..-... .| |.+++..-..+|.+..++..|+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHH
Confidence 344555555555555443221 22 4444444445555555444443
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=59.98 E-value=27 Score=20.74 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004269 582 YTALIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~ 606 (764)
|..+...|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 341
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.67 E-value=73 Score=24.57 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHH
Q 004269 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414 (764)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 414 (764)
+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. + .+..|..++.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-CCcHHHHHHHHHHHcCchhhh
Confidence 33455555555543 22233332222234466667777777776 4 566677777777666654444
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=58.84 E-value=20 Score=21.00 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=6.3
Q ss_pred ccCCHHHHHHHHHHHH
Q 004269 239 RLRDLKSAYETLQHMV 254 (764)
Q Consensus 239 ~~g~~~~A~~~~~~~~ 254 (764)
+.|+.++|.+.|+++.
T Consensus 12 ~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 3334444444444333
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.19 E-value=39 Score=30.66 Aligned_cols=91 Identities=12% Similarity=-0.108 Sum_probs=58.1
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChh-----cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGAD-----DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
...+-.+|++++|..-|...+..- ++.+. .|..-..+..+.+.++.|+.-..+.++.+ +........-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 344667788888888887776653 22221 23333445667778888888888777775 223333334455777
Q ss_pred ccCCHHHHHHHHHHHhhh
Q 004269 134 KGGYLEEASNLIYFLGER 151 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~ 151 (764)
+...+++|+.-+..+.+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 778888888888877654
No 344
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.13 E-value=2.5e+02 Score=29.59 Aligned_cols=145 Identities=14% Similarity=0.048 Sum_probs=70.0
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChh--cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH--HHHHHHHHHHc
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGAD--DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK--CYLLMMQALCK 134 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~ 134 (764)
+...+..|+.+-+..+++ .|..++.. ...+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 444566777766655554 34333322 2334455555667765 344455566544432 11233455667
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHHHhhcChhHH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY--TELLKLAVWQKNLSAV 212 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a 212 (764)
.|+.+.+..+++.-..... ..+. ...+.+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+-+
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~-~~~~-~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADD-VFYK-DGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CCCHHHHHHHHHcCCcccc-cccC-CCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 7888887777653211000 0011 1223444445566654 44444555665543211 1233344456666555
Q ss_pred HHHHH
Q 004269 213 HEIWE 217 (764)
Q Consensus 213 ~~~~~ 217 (764)
.-+++
T Consensus 152 ~~Ll~ 156 (413)
T PHA02875 152 ELLID 156 (413)
T ss_pred HHHHh
Confidence 44443
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.98 E-value=31 Score=33.29 Aligned_cols=69 Identities=12% Similarity=-0.068 Sum_probs=49.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh-----cCCCCChh
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEV 194 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 194 (764)
+.+...+.|..+|.+.+|.++.++...-+ +.+...|-.|+..++..|+--+|.+-++.+.+ .|+..|-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 55566778888888888888888776543 34667788888888888887777777776643 25555443
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=57.46 E-value=2.3e+02 Score=28.93 Aligned_cols=69 Identities=12% Similarity=0.025 Sum_probs=42.7
Q ss_pred CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH
Q 004269 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
....++..+...+-+.|.++.|...+..+.+.+.......+ ...-.-++.+-
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~----------------------------~v~~e~akllw 195 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLP----------------------------RVFLEYAKLLW 195 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCc----------------------------chHHHHHHHHH
Confidence 34456777777788888888888888877663321111000 13334455566
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004269 305 RTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 305 ~~~~~~~a~~~~~~m~~ 321 (764)
..|+..+|+..++....
T Consensus 196 ~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 196 AQGEQEEAIQKLRELLK 212 (352)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 67777888887777766
No 347
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=57.10 E-value=1.6e+02 Score=27.54 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=9.8
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 004269 621 LKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 621 i~~~~~~g~~~~a~~~~~~m 640 (764)
|......|+.++|++..+.+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34444555555555554444
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.96 E-value=27 Score=22.89 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=7.5
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 004269 623 KACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 623 ~~~~~g~~~~a~~~~~~m~ 641 (764)
+|...|+.+.|.+++++..
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3333344444444333333
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.68 E-value=1.6e+02 Score=26.93 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=38.0
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004269 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYT-----ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 628 (764)
+...+++++|..-++..... |....+. .|.......|.+|+|+++++.....++ .......--+.+...|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 44555666665555544432 1111111 123344455556666665554432211 1111222233445555
Q ss_pred CHHHHHHHHHHHHHC
Q 004269 629 RIDVIEFIIEQMHQN 643 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~ 643 (764)
+-++|..-|++.++.
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 555565555555543
No 350
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.66 E-value=1.4e+02 Score=27.37 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=28.3
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+.+.+.++.|..-....++-.+....+...-..+|.+...++.|+.=|.++.+
T Consensus 144 ~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 144 LIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444444444433333332332333333334467777778888888888777
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.43 E-value=3.8e+02 Score=31.21 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHH----HHHHHhhCCcchHHHHHHhcccc
Q 004269 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQ----IVDALCRGERSRASHLLLNLGHA 81 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~----i~~~~~~~~~~~a~~~~~~~~~~ 81 (764)
+..-+..++.+.++++|. .+.+... .-.|+.....-... ...+-.++++++|...|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai-~L~e~~~---------~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAI-SLAEILD---------SPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHH-HHHhccC---------CCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 677788888899999988 5544321 11222111111111 12244689999999999998764
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=55.57 E-value=1e+02 Score=24.48 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=25.4
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004269 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
+...|++++|..+.+.+ ..||...|-+|-. .+.|.-+++..-+.+|..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 44556666665555444 3455555554432 24455555555555554444
No 353
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.45 E-value=2e+02 Score=27.63 Aligned_cols=157 Identities=11% Similarity=0.092 Sum_probs=94.5
Q ss_pred ccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHH
Q 004269 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 318 (764)
+..++++|+.-|++..+. .+.. +.+.+ -+.--+|..+.+.+++++.+..|.+
T Consensus 39 ~e~~p~~Al~sF~kVlel--EgEK------------geWGF--------------KALKQmiKI~f~l~~~~eMm~~Y~q 90 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLEL--EGEK------------GEWGF--------------KALKQMIKINFRLGNYKEMMERYKQ 90 (440)
T ss_pred cccCHHHHHHHHHHHHhc--cccc------------chhHH--------------HHHHHHHHHHhccccHHHHHHHHHH
Confidence 455788899999888873 3322 00000 1344568888999999999999998
Q ss_pred HHHC---CCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 319 MQSL---GLQ--PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-----NNLKPQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 319 m~~~---g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (764)
|... .+. -+..+.|+++.-...+.+.+....+++.-.+ .+-...-.|-..|...|...|.+.+..+++.+
T Consensus 91 lLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq 170 (440)
T KOG1464|consen 91 LLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ 170 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH
Confidence 8631 122 2344677777766666666555555543322 12222333445667777777777777777777
Q ss_pred HhhCC--------------CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 389 ISRCT--------------NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 389 ~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
+...- -...|..=|..|....+-.....+|++...
T Consensus 171 Lh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 171 LHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred HHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 65421 123355556666666666666667766555
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=55.42 E-value=2.9e+02 Score=29.48 Aligned_cols=179 Identities=10% Similarity=0.070 Sum_probs=88.7
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
..-+++..+..+....-.+.+-.+|...| -+...|..+++.|... .-++-..+|+++.+-.-.|+..-..|...|-+
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34445555555555555555555555432 3444555555555544 44445555555555444455444555554444
Q ss_pred cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004269 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 319 (764)
++...+...|.++..+-+.-.. .......|.-+...- ..+.+..+.+...+
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q--------------------------~~~i~evWeKL~~~i--~dD~D~fl~l~~ki 195 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQ--------------------------NAAIKEVWEKLPELI--GDDKDFFLRLQKKI 195 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhh--------------------------hhhHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 5555566666655542111000 000013444444321 23455555555555
Q ss_pred HH-CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 320 QS-LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 320 ~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
.. .|...-.+.+.-+..-|....++.+|.+++..+.+.+-+ |...-..++.
T Consensus 196 qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 196 QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 43 233333445555556677777788888887777766543 4444334443
No 355
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.07 E-value=3.6e+02 Score=30.48 Aligned_cols=224 Identities=10% Similarity=-0.061 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHHHhhcC-CCCChh--hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 171 LHSMVHANLCLDLMDSRM-VGKNEV--TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
..+.+.|..++....... ..+... .+..+.......+..+++...++...... .|.....--+......++++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHH
Confidence 355677888887764432 222211 22223222222222455555555443322 23334444455666888998888
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----- 322 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 322 (764)
..+..|...... .. .-.--+.+++...|+.++|...|+.....
T Consensus 333 ~~i~~L~~~~~~-~~-------------------------------rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG 380 (644)
T PRK11619 333 TWLARLPMEAKE-KD-------------------------------EWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYP 380 (644)
T ss_pred HHHHhcCHhhcc-CH-------------------------------hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHH
Confidence 888887652211 11 13335667777789999999999887431
Q ss_pred -------CCCCC------ccc--------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004269 323 -------GLQPS------SHT--------YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381 (764)
Q Consensus 323 -------g~~p~------~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (764)
|..++ ... -..-+..+...|....|...+..+... . +......+.....+.|..+.
T Consensus 381 ~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~A~~~g~~~~ 457 (644)
T PRK11619 381 MVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-R--SKTEQAQLARYAFNQQWWDL 457 (644)
T ss_pred HHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCHHH
Confidence 21100 000 001122334456666666666665553 2 33344445555555666665
Q ss_pred HHHHHHHHhhCC-----CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHH
Q 004269 382 AEALLDQISRCT-----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430 (764)
Q Consensus 382 a~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~ 430 (764)
+........... -+..|...+..+.+...++.++-.---..+ ++.|+..
T Consensus 458 ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 458 SVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 555443221110 233455555555555555554422222222 5555543
No 356
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.77 E-value=4e+02 Score=30.63 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004269 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594 (764)
Q Consensus 562 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 594 (764)
.+..+++-....--.-++..+|.++..|++..+
T Consensus 611 ~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 611 QAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 444444444444334578888888888877544
No 357
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=53.15 E-value=35 Score=33.68 Aligned_cols=86 Identities=14% Similarity=-0.091 Sum_probs=44.2
Q ss_pred HHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004269 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
.|-++|.+++|++.|..-.... +.++.++..-..+|.+...+..|..=.+..+..+ ..-...|..-..+--..|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 3556677777777777665543 3366666666666666666655555555444432 1112233333333333444444
Q ss_pred HHHHHHHH
Q 004269 141 ASNLIYFL 148 (764)
Q Consensus 141 A~~~~~~m 148 (764)
|.+-.+..
T Consensus 184 AKkD~E~v 191 (536)
T KOG4648|consen 184 AKKDCETV 191 (536)
T ss_pred HHHhHHHH
Confidence 44444444
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.11 E-value=41 Score=25.33 Aligned_cols=46 Identities=2% Similarity=-0.025 Sum_probs=27.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 004269 626 EKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 626 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
...+.+.|+..|+..++.-..|. -.++.+++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777665433322 22455566677777777776654
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.95 E-value=1.6e+02 Score=28.56 Aligned_cols=84 Identities=11% Similarity=-0.018 Sum_probs=40.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCccHHHHHHHH-----H
Q 004269 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAAC-----D 406 (764)
Q Consensus 335 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~li~~~-----~ 406 (764)
|.|++..++|.++....-+.-+.--+....+...-|-.|.|.|....+.++-..-...+ +..-|.+++.-| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 45555555555555433222222112223344444445566666655555554443332 333355544433 3
Q ss_pred hcCCHHHHHHHH
Q 004269 407 TMDKPERAIKIF 418 (764)
Q Consensus 407 ~~~~~~~a~~l~ 418 (764)
-.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356677776665
No 360
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.94 E-value=2.1e+02 Score=26.96 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=52.4
Q ss_pred hCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-----------CCChhhhHHHHH
Q 004269 98 ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI-----------YPILPVYNSFLG 166 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~~li~ 166 (764)
.+..+..-..++.+-....++.-+..-..+++ +...|+...|..-++.-...+|. .|.......++.
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 34444444445555555556655555555544 55678888887777665443332 344444445554
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCC
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKN 192 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 192 (764)
.|. .+++++|.++|.++-+.|..|.
T Consensus 248 ~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 248 ACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 443 4567777777777777766654
No 361
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.26 E-value=62 Score=21.64 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 593 GDFDEALNLLDLVSLEGIPHDVLLYNTI 620 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~l 620 (764)
|-++++..++++|.+.|+.-+...+..+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 4444444444444444444444444333
No 362
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.93 E-value=2e+02 Score=26.34 Aligned_cols=22 Identities=5% Similarity=-0.203 Sum_probs=11.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHC
Q 004269 301 HACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+...|+-++|..-|.+..+.
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHc
Confidence 3445555555555555555544
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.43 E-value=54 Score=24.72 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhCChhHHHHH
Q 004269 523 QESHRAMEIFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 523 ~~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~ 566 (764)
++.++|+..|....+.-..|.. .++..++.+|+..|++.+++++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554443222111 2344455555555555444433
No 364
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.66 E-value=2.9e+02 Score=27.81 Aligned_cols=176 Identities=13% Similarity=0.132 Sum_probs=95.2
Q ss_pred HHHHHHHHHhc-CCCCChhhHHHHHHHHHHcC-----ChHHHH--------HHHHH-HHhCCCCCC--H----HHH-HHH
Q 004269 493 IRELIQYFCDS-KTPLGTPTYNTVLHSLVEAQ-----ESHRAM--------EIFKQ-MKTCGIPPN--A----ATY-NIM 550 (764)
Q Consensus 493 ~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~-----~~~~A~--------~l~~~-m~~~g~~p~--~----~t~-~~l 550 (764)
+..++.++... ...++...|..++..+.... ..+... .++.. +.+.|..++ . ... ..+
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~ 135 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALL 135 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHH
Confidence 55666666666 56667667766665443322 111111 12222 223355544 2 122 222
Q ss_pred HHHHH-hhCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 551 IDCCS-IIRCFKSASALVSMMVRDGF----YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625 (764)
Q Consensus 551 l~~~~-~~g~~~~a~~~~~~~~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 625 (764)
+...+ ..+-.+.|.+.|+.....+. ..++.....++....+.|..++-..+++.... .++...-..++.+.+
T Consensus 136 ~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa 212 (324)
T PF11838_consen 136 LSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALA 212 (324)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHT
T ss_pred HHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhh
Confidence 33333 12235678888888887422 44666667777788888887666666665553 357778888999999
Q ss_pred HcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCh--HHHHHHHH
Q 004269 626 EKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVNCGFH--NSAMEALQ 673 (764)
Q Consensus 626 ~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~--~~a~~~~~ 673 (764)
...+.+...++++.....+ +++.. . ..++.++...+.. +.+.++++
T Consensus 213 ~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 213 CSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp T-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 9999999999999998754 44333 3 3445555534443 66665554
No 365
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.98 E-value=2.1e+02 Score=26.03 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=44.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--------------
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-------------- 360 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------- 360 (764)
.|.....+-++.-+.+++-+.|-- .+=-+++-.|-+..+|.++..+++.|.+..+.
T Consensus 109 PFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~a 178 (233)
T PF14669_consen 109 PFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLA 178 (233)
T ss_pred CHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccC
Confidence 555666666665555544332211 11235666677777888888888877664322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004269 361 PQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (764)
+--...|.....+.+.|.+|.|..+++
T Consensus 179 srCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 179 SRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred chhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 222334444444555555555555544
No 366
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=48.42 E-value=2.2e+02 Score=28.43 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=45.8
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-HHH
Q 004269 550 MIDCCSIIRCFKSASALVSMMVRD---GFYPQTMTY--TALIKILLDYGDFDEALNLLDLVSL-----EGIPHDVL-LYN 618 (764)
Q Consensus 550 ll~~~~~~g~~~~a~~~~~~~~~~---g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~-~~~ 618 (764)
++...-+.++.++|+++++++.+. --.|+.+.| ..+...+...|+..++.++++...+ -+++|++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 334445556788888888877753 234565555 3455566677888888888777765 46666443 344
Q ss_pred HHHHHH
Q 004269 619 TILKKA 624 (764)
Q Consensus 619 ~li~~~ 624 (764)
.+-+-|
T Consensus 161 ~lssqY 166 (380)
T KOG2908|consen 161 SLSSQY 166 (380)
T ss_pred HHHHHH
Confidence 444433
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.55 E-value=84 Score=34.84 Aligned_cols=238 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCC------h-hHHHHHHHHHHHcCccc
Q 004269 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD------P-LFVMETWRMMEEKEIGL 120 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~-~~a~~~~~~m~~~~~~~ 120 (764)
|...+..+..++.+.. .|+...+++....+.... .-+.+..-++..+....+ . ...++.+-.--....-.
T Consensus 294 ~~~~~~~~e~~~~~i~-~~d~~~vL~~~~~~~~~~--w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s 370 (566)
T PF07575_consen 294 PPDSTNPLEQILLAIF-EGDIESVLKEISSLFDDW--WFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMS 370 (566)
T ss_dssp ---TTSTTHHHHHHHH-TS--GGGHHHHHHH--HH--HHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH-ccCHHHHHHHHHHHccch--hHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhc
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...|..-+.-+..+++.. ....+.+..+.++ .+...-..++..|.+.|-.+.|.++.+.+-.+ .-...-|...+
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~-~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~--~~~~~~~g~AL 445 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPL-DTNDDAEKLLEICAELGLEDVAREICKILGQR--LLKEGRYGEAL 445 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHCCCHHHHH
Q ss_pred HHHHhhcChhHHHHHHHHHHhc-CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
..+.+.|+...+..+-..+.+. ...+......++.......-....+..+....+
T Consensus 446 ~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre------------------------ 501 (566)
T PF07575_consen 446 SWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE------------------------ 501 (566)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH------------------------
Q ss_pred CccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 004269 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 337 (764)
.....+.+++.+|.+.+-.+....+.|..+-...|..+
T Consensus 502 --------------------F~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 502 --------------------FYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------------------------------------
T ss_pred --------------------HHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.54 E-value=2.1e+02 Score=30.89 Aligned_cols=140 Identities=12% Similarity=0.065 Sum_probs=95.6
Q ss_pred cccHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 119 GLNNKCYLLMMQALCKG--GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
-|+..+...++.-.... ...+-|-.+|..|.. .+-|-..+.|.-.--....|+...|...+.......+.-.-+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 34555555555444432 233455666666642 33454444443333334469999999998887665444455566
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
..|.....+.|-...|..++.+.+.-....+.++..+.++|....+++.|++.|++..+ ..|+.
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~--~~~~~ 709 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALK--LTTKC 709 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHh--cCCCC
Confidence 66777778888888898888888776666778888899999999999999999999887 44544
No 369
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.47 E-value=76 Score=21.20 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=27.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4567888899999999999998888888776654
No 370
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.45 E-value=3.1e+02 Score=27.56 Aligned_cols=146 Identities=15% Similarity=0.074 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHcCc----cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 104 LFVMETWRMMEEKEI----GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 104 ~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
..|.+.|......+. ..++.....++....+.|+.+.-..+++.... .++......++.+++...+.+...+
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 467788888777422 44666777788888888887776666666643 2466678899999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcCh--hHHHHH----HHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHH
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNL--SAVHEI----WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~--~~a~~~----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (764)
+++.....+..++... ..++.++...+.. +.+.+. |+.+.+..+.+......++..+...-..++-..-++.+
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 9999888642333333 3444444423332 444444 44444445555546677777665543333333334444
Q ss_pred H
Q 004269 254 V 254 (764)
Q Consensus 254 ~ 254 (764)
.
T Consensus 302 ~ 302 (324)
T PF11838_consen 302 F 302 (324)
T ss_dssp H
T ss_pred H
Confidence 3
No 371
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=45.82 E-value=3.8e+02 Score=28.18 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCChhhHHH-HHHHHHHcCChHHHHHHHHH---HHhCCCCC-CHHHHHHHHH
Q 004269 506 PLGTPTYNT-VLHSLVEAQESHRAMEIFKQ---MKTCGIPP-NAATYNIMID 552 (764)
Q Consensus 506 ~~~~~~~~~-li~~~~~~~~~~~A~~l~~~---m~~~g~~p-~~~t~~~ll~ 552 (764)
.||+.-|-. -...|+..|+++..+++|+- |+++++.| +..|-+++++
T Consensus 333 h~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~sslls 384 (615)
T KOG0508|consen 333 HPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLS 384 (615)
T ss_pred CCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH
Confidence 355543322 22457788999999999885 67776665 3345444443
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.82 E-value=38 Score=24.18 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 630 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.+...++++.+.. ..-|-..--.+|.+|...|++++|.++++.+..
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445554442 222334444567788888888888887776643
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.19 E-value=1e+02 Score=28.33 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
.|++.+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666666666666666653
No 374
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.64 E-value=23 Score=29.72 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 595 FDEALNLLDLVSLEGIPHDVLLYNTILK 622 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~ 622 (764)
-..|..+|++|++.|-+|| .|+.|+.
T Consensus 111 k~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3344455555555554444 3444443
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.53 E-value=44 Score=19.27 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=17.4
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHH
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 235 (764)
|+.+.+..+|+.+.+..+.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666777666665556666555543
No 376
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.27 E-value=3.5e+02 Score=27.31 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc---cCCHHHHHHHHH
Q 004269 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR---LRDLKSAYETLQ 251 (764)
Q Consensus 175 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 251 (764)
+.-+.+|+...+.++ -+.......|+.+.+..+.+...+.|+.+....+.+...|...++.... .-.+.....+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 455667777666633 3555666677777778888888888888888877788888888876654 235666666666
Q ss_pred HHHH
Q 004269 252 HMVA 255 (764)
Q Consensus 252 ~~~~ 255 (764)
+..+
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 6554
No 377
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.24 E-value=4.1e+02 Score=28.01 Aligned_cols=89 Identities=11% Similarity=0.037 Sum_probs=67.7
Q ss_pred cCCHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH
Q 004269 171 LHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 171 ~g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
.|++-.| .+++..++...-.|+..-..+.| +...|+++.+.+.+....+.......+...+++...+.|+++.|..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4666555 45666666655556665555544 46789999999999988887788888999999999999999999999
Q ss_pred HHHHHHhhccCc
Q 004269 250 LQHMVALAMMGK 261 (764)
Q Consensus 250 ~~~~~~~~~~~~ 261 (764)
-+.|....+...
T Consensus 380 a~~~l~~eie~~ 391 (831)
T PRK15180 380 AEMMLSNEIEDE 391 (831)
T ss_pred HHHHhccccCCh
Confidence 998887555443
No 378
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.85 E-value=3.4e+02 Score=27.05 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCC
Q 004269 582 YTALIKILLDYGDFDEALNLLDLVS----LEGIPHDVLLYNTILKK-ACEKGRIDVIEFIIEQMHQNKVQPD 648 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~ 648 (764)
+-....-||+.|+.+.|++.+.+.. ..|.+.|.+.+..=+.- |..+.-+.+-++..+.+.+.|...+
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChh
Confidence 3344455666666666665554432 23444454433322211 1222223444444444555554443
No 379
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.76 E-value=4e+02 Score=27.83 Aligned_cols=332 Identities=8% Similarity=-0.028 Sum_probs=0.0
Q ss_pred hhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc
Q 004269 37 SRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK 116 (764)
Q Consensus 37 ~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 116 (764)
.+.|...-...-+......+..+..|...|+-.+|.+..+.+ ..+..+...+-++....+.-..+..+.-.....
T Consensus 199 e~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke 273 (645)
T KOG0403|consen 199 ELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKE 273 (645)
T ss_pred HhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchh
Q ss_pred CccccHHHHHHHHHHHHccCC--------HHHHHHHHHHHhhhcCCCCChh----------------------hhHHHHH
Q 004269 117 EIGLNNKCYLLMMQALCKGGY--------LEEASNLIYFLGERYGIYPILP----------------------VYNSFLG 166 (764)
Q Consensus 117 ~~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~~~~~~----------------------~~~~li~ 166 (764)
+...+...-+.+..++.+.+. +..|...|+.+..+....-... ....+|.
T Consensus 274 ~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIq 353 (645)
T KOG0403|consen 274 GREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQ 353 (645)
T ss_pred hhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHH
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC----C
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR----D 242 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~ 242 (764)
-|...|+..+..+.++.+--....|-..-+..-+..=.+...-+.|-.++..+--..-+....-+.+...+-... +
T Consensus 354 EYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD 433 (645)
T KOG0403|consen 354 EYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALD 433 (645)
T ss_pred HHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhcc
Q ss_pred HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHH-------HHHHH
Q 004269 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG-------LAEQL 315 (764)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-------~a~~~ 315 (764)
.-.|-+.+.....+.+..+. .-+.-+..+...=... ..-..
T Consensus 434 ~p~a~~elalFlARAViDdV--------------------------------Lap~~leei~~~lp~~s~g~et~~~Ars 481 (645)
T KOG0403|consen 434 IPRASQELALFLARAVIDDV--------------------------------LAPTNLEEISGTLPPVSQGRETLDKARS 481 (645)
T ss_pred ccccHHHHHHHHHHHHhhcc--------------------------------cccCcHHHHcCCCCCchhhHHHHHHHHH
Q ss_pred HHHHHHCCCCCCccc---------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 316 MLQMQSLGLQPSSHT---------------YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 316 ~~~m~~~g~~p~~~~---------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
+-.|...|-+....- ...|+.-|...|++.+|..+.+++----+. ...++.+++...-+.|+-.
T Consensus 482 Llsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t 560 (645)
T KOG0403|consen 482 LLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDST 560 (645)
T ss_pred HHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHH
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHh
Q 004269 381 LAEALLDQISRCTNPKPFSAFLAACDT 407 (764)
Q Consensus 381 ~a~~~~~~~~~~~~~~~~~~li~~~~~ 407 (764)
..+.++++.-.. ..+|-|.|-++|.+
T Consensus 561 ~~ldLLk~cf~s-glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 561 MILDLLKECFKS-GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHHhc-CceeHHHhhhhhhh
No 380
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.68 E-value=1.3e+02 Score=26.17 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=42.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004269 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 601 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
+.+.+.+.|+++++. -..++..+...++.-.|.++++++.+.+...+..|.+..+..+...|-+.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 344455567666542 33445555666666788888888888776667777777777777776543
No 381
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.45 E-value=95 Score=21.35 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=14.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004269 623 KACEKGRIDVIEFIIEQMHQNKVQPDPST 651 (764)
Q Consensus 623 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 651 (764)
++.+.|++++|.+..+.+++ +.|+..-
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 45566666666666666554 4555543
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.99 E-value=99 Score=28.37 Aligned_cols=31 Identities=26% Similarity=0.137 Sum_probs=13.8
Q ss_pred CChhhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
|+...|..++..+...|+.++|..+.+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 383
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.26 E-value=2.3e+02 Score=24.56 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 543 NAATYNIMIDCCSIIRC-FKSASALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 543 ~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
+..+|.+++.+.++..- --.+..+|+-|.+.+.++++.-|..+|.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 34445555555544333 22344455555554455555555555555444
No 384
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.14 E-value=1.1e+02 Score=20.99 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004269 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436 (764)
Q Consensus 401 li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll 436 (764)
+.-++.+.|++++|.+..+.+.+ +.|+......+-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~-~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE-IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH-HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh-hCCCcHHHHHHH
Confidence 44577888999999998888887 667766655443
No 385
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.03 E-value=2e+02 Score=26.01 Aligned_cols=38 Identities=11% Similarity=0.263 Sum_probs=21.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 660 (764)
.+-.|.+.|.+++|.+++++... .|+......-+....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II 154 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHH
Confidence 34456677777777777777663 445444444333333
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.37 E-value=3.2e+02 Score=25.93 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=22.2
Q ss_pred hcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 004269 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536 (764)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~ 536 (764)
..+++++|...+-.....|+-. .-++.++...|+...|+.+++.+.
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcC
Confidence 3455666666553322222211 125555555666666666665543
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.29 E-value=2.5e+02 Score=30.34 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=36.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004269 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 296 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 360 (764)
.-.|.....+.|-...|..++.+..... ....-++-.+-+++....+++.|.+-|++..+....
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 3344455555555566666666655443 223445555666666666777777777666665433
No 388
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.16 E-value=2.6e+02 Score=28.04 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC---CCCCCHHHHHH--HHHHHHhhCChhHHHHHHHHHHH-----CCCCCCHHH-
Q 004269 513 NTVLHSLVEAQESHRAMEIFKQMKTC---GIPPNAATYNI--MIDCCSIIRCFKSASALVSMMVR-----DGFYPQTMT- 581 (764)
Q Consensus 513 ~~li~~~~~~~~~~~A~~l~~~m~~~---g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~- 581 (764)
..++...-+.++.++|++.++++.+. --.|+.+.|.. +...+...||...+.+++++..+ .+++|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34455555667999999999998754 23577777644 44556678999999999988887 577775543
Q ss_pred HHHHH
Q 004269 582 YTALI 586 (764)
Q Consensus 582 ~~~li 586 (764)
|..+-
T Consensus 159 fY~ls 163 (380)
T KOG2908|consen 159 FYSLS 163 (380)
T ss_pred HHHHH
Confidence 44443
No 389
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.91 E-value=2.5e+02 Score=24.40 Aligned_cols=96 Identities=10% Similarity=0.028 Sum_probs=62.0
Q ss_pred hcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHH
Q 004269 340 SDRGLRNGMEVLKIMQQNNLK-PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~ 418 (764)
...+.+++..+++.|.-..+. +...++ -...+...|++++|.++|+++........|..-+.++|-...-+..++.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVH 99 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHH
Confidence 478899999999988764332 122233 33457889999999999999998754456666666666555445555444
Q ss_pred H-HHhc-cCCCCHHHHHHHHH
Q 004269 419 A-KMRQ-KLRPDIRTYELLFS 437 (764)
Q Consensus 419 ~-~m~~-~~~p~~~t~~~ll~ 437 (764)
- ++.+ +-.|+.....-.+.
T Consensus 100 A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 100 ADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHhCCCHhHHHHHHHHh
Confidence 3 3344 65666655544443
No 390
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.44 E-value=5.2e+02 Score=27.84 Aligned_cols=101 Identities=10% Similarity=-0.121 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
++..+.++.+.+..|+..+......++. ...|+...|+.++++....+ ....|+..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh---------------
Confidence 4455556666555566555555544433 34588888888887765431 1223444443322
Q ss_pred HHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
...+...+..++......+....|+.+++.+.+.|.+|..
T Consensus 244 ----g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 ----GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred ----CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 1224445555666665556667899999999998888765
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.50 E-value=77 Score=22.62 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
-.+|.++...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455555555555555544443
No 392
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=38.35 E-value=64 Score=17.80 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004269 584 ALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m 605 (764)
.+...+...|++++|...++..
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444444443
No 393
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=38.17 E-value=3.1e+02 Score=24.83 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
+++|...|++... .+|+. ..|+.-+... ++|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~n-------------------------------e~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNN-------------------------------ELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT--------------------------------HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCc-------------------------------HHHHHHHHHH------HhhHHHHHHHHHH
Confidence 5567777777766 67776 5787777665 3566677777665
Q ss_pred CC
Q 004269 323 GL 324 (764)
Q Consensus 323 g~ 324 (764)
+.
T Consensus 137 ~~ 138 (186)
T PF06552_consen 137 GL 138 (186)
T ss_dssp SS
T ss_pred Hh
Confidence 53
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.15 E-value=2.2e+02 Score=23.18 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=21.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
-|..|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 677888888888888888888888776
No 395
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.86 E-value=7.7e+02 Score=29.41 Aligned_cols=133 Identities=19% Similarity=0.079 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHhhcccchhhhhccccccchhhh-hccccCCchhhhhhhHHHHHHHHHh-hCCcchHHHHHHhccccCCC
Q 004269 7 RTRFQLIADSFCKSKFHKHERRNVANKLELSRT-LTTTMGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHS 84 (764)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~-~~~~~~~~p~~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~~~~ 84 (764)
|.-....+..++..+++.+|+ .++++- |. ++-...++|+..... +..+.+ -++.+-.-.++..+...++
T Consensus 694 R~LVL~~ir~~Ld~~~Y~~Af-~~~Rkh---RIdlNll~Dh~p~~Fl~n----i~~Fv~qi~~~~~lnLFls~L~~EDv- 764 (928)
T PF04762_consen 694 RALVLAGIRKLLDAKDYKEAF-ELCRKH---RIDLNLLYDHNPEQFLEN----IELFVEQIKDVDYLNLFLSSLRNEDV- 764 (928)
T ss_pred HhHHHHHHHHHHhhccHHHHH-HHHHHh---ccccceEEECCHHHHHHH----HHHHHHhcCCHHHHHHHHHhcccccc-
Confidence 334456677888999999999 666654 32 233335566643333 333443 2444444445555554442
Q ss_pred CChhcHHHHH------------HHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC--CHHHHHHHHHHHhh
Q 004269 85 LGADDFFHIL------------NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG--YLEEASNLIYFLGE 150 (764)
Q Consensus 85 ~~~~~~~~ll------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 150 (764)
+...|.... ......+++....+.+....+.. .-...-...+|.+|++.+ ++++|+.+..++.+
T Consensus 765 -t~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 765 -TKTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred -cccccccccccccccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 222232222 11111122333333333333211 123334456777888877 78888888887764
No 396
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.74 E-value=3.2e+02 Score=24.96 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=9.7
Q ss_pred HcCCHHHHHHHHHHHH
Q 004269 626 EKGRIDVIEFIIEQMH 641 (764)
Q Consensus 626 ~~g~~~~a~~~~~~m~ 641 (764)
+.|+++.|.++++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4466666666666655
No 397
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.03 E-value=57 Score=31.95 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=29.8
Q ss_pred CCCChh-hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHH
Q 004269 154 IYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197 (764)
Q Consensus 154 ~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 197 (764)
+.|+.. -||.-|....+.||+++|+.++++.++.|+.--..||-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 334444 35678888888888888888888888877664444443
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.55 E-value=66 Score=31.50 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=32.4
Q ss_pred CChh-hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004269 507 LGTP-TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550 (764)
Q Consensus 507 ~~~~-~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l 550 (764)
||+. -||..|....+.|++++|+.+++|.++.|+.--..||...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4443 5678888888888999999999988888876545555433
No 399
>PRK12798 chemotaxis protein; Reviewed
Probab=36.50 E-value=5.2e+02 Score=26.98 Aligned_cols=194 Identities=13% Similarity=0.076 Sum_probs=120.4
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhh-CCCChhHHHHHHHHHHHc--CccccHHHHHHHHHHHHccCCHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA-RSPDPLFVMETWRMMEEK--EIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
-+|+..+|.+.+..+.....++...-|..|+.+-. ...++..|+.+|++..=. |.-........-|-.....|+.++
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 37889999999999988777777777888887555 446899999999986543 222233344445566788999998
Q ss_pred HHHHHHHHhhhcCCCCChhh-hHHHHHHHhccC---CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 141 ASNLIYFLGERYGIYPILPV-YNSFLGACAKLH---SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 141 A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+..+-.+...++.-.|=..- +..+..++.+.. ..+.-..++..|.. .--...|..+-+.-.-.|+.+.|.-.-
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 87776666555433332222 223333444443 23333344444332 123457888888888899998888777
Q ss_pred HHHHhcCC----CC--HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 217 EDYIKHYS----LS--IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 217 ~~~~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++...-.. +. ...|... +-.-..+++.+.+.+..+....+.+.+
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGA--ALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHH--HccCcccHHHHHHHHhcCChhhCChhh
Confidence 77765321 11 1122222 223445688888888888776666554
No 400
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.02 E-value=3.7e+02 Score=25.19 Aligned_cols=62 Identities=13% Similarity=-0.022 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCC----CCHHHHHHHHH-HHHhcCChHHHHHHHHHHHH
Q 004269 616 LYNTILKKACEKGR-------IDVIEFIIEQMHQNKVQ----PDPSTCHFVFS-GYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 616 ~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~----p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~ 677 (764)
.+.-+.+.|...|+ ...|.+.|++..+..-. .+..+...|++ ...+.|+.++|.+.|.++-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 33444555555555 23455555555543222 23344555555 55667888888888876654
No 401
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.94 E-value=2e+02 Score=25.92 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=8.9
Q ss_pred HHhccCCHHHHHHHHHHHhh
Q 004269 167 ACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~ 186 (764)
+|.+.|.+++|.++|+...+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34444444444444444433
No 402
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.61 E-value=1.7e+02 Score=32.08 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=24.0
Q ss_pred hHHHHHHHHHccCCHH------HHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004269 295 SFSDVIHACGRTQNSG------LAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 340 (764)
.||..|+.+.+.|.++ .|.+++++.. +.-|..||..++.+...
T Consensus 67 ~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all~~~sln 115 (1117)
T COG5108 67 MINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALLCQASLN 115 (1117)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHHHHhhcC
Confidence 6666677777777653 2333333333 44466677666665443
No 403
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.37 E-value=1.3e+02 Score=26.06 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=22.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004269 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378 (764)
Q Consensus 334 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (764)
++..+...++.-.|.++|+.+.+.+...+..|.-.-++.+...|-
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334444444445555555555555554444444444445555443
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.15 E-value=2.2e+02 Score=23.97 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCccc-cHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004269 105 FVMETWRMMEEKEIGL-NNKCYLLMMQALCKGGYLEEASNLIYF 147 (764)
Q Consensus 105 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 147 (764)
.+.++|..|...|+.. ....|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6777777777776543 344666777777777777777777753
No 405
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.14 E-value=6.8e+02 Score=28.48 Aligned_cols=101 Identities=15% Similarity=0.008 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.++....+..+.++.|+..+......++... .|+...++.+++.+...| -...+...+-..+.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g--~g~It~e~V~~lLG------------- 242 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALG--SGKVAENDVRQMIG------------- 242 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHHc-------------
Confidence 4555666666666666665555555555433 578888888887765533 11222222221111
Q ss_pred HHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
..+......|+.++. .++...++.+++.+...|..+..
T Consensus 243 ------~~d~~~If~LldAL~-~~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 243 ------AVDKQYLYELLTGII-NQDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred ------ccCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHHH
Confidence 112223344444444 48899999999999988876654
No 406
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.82 E-value=4.6e+02 Score=25.65 Aligned_cols=72 Identities=7% Similarity=0.059 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004269 578 QTMTYTALIKILLDYGDFDEALNLLDLVSL----EGIPHDVLLYNT-ILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
-...+..+..-|++.++.+.+.++..+..+ .|.+.|...--+ |.-.|....-+++-++..+.|.++|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 345566777788888888888777665443 455555432211 111222222356667777777777765543
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.90 E-value=8.3e+02 Score=28.30 Aligned_cols=318 Identities=15% Similarity=0.065 Sum_probs=162.1
Q ss_pred chHHHHHHhccccCCC-------CChhcHHHHHHHhhCC----CChhHHHHHHHH----HHHcCccccHHHHHHHHHHHH
Q 004269 69 SRASHLLLNLGHAHHS-------LGADDFFHILNYCARS----PDPLFVMETWRM----MEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~-------~~~~~~~~ll~~~~~~----~~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~ 133 (764)
+....+++++...|.. ..-.-|+.++.-+.+. +......+++.. ..+.|. |+.. |.-..
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~~eA-----I~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-PSEA-----IDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-hHHH-----HHHHH
Confidence 4455566666655532 2234466666544432 223334444433 334442 3322 33345
Q ss_pred ccCCHHHHHHHHHHHhhh--------------cCCCCChh-hhH--HHHHH--HhccCCHHHHHHHHHHHhhcCCCCChh
Q 004269 134 KGGYLEEASNLIYFLGER--------------YGIYPILP-VYN--SFLGA--CAKLHSMVHANLCLDLMDSRMVGKNEV 194 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~--------------~~~~~~~~-~~~--~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (764)
+.|+++.|..++++...+ ..++++.. .+. .++.+ .....++.+|..++.+....-..|+..
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~ 451 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS 451 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc
Confidence 678888887777654111 11222111 111 12222 344688999999998877653333322
Q ss_pred -------hHHHHHHH-HHhhcChhHHHHHHHHHHhc-----CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCc
Q 004269 195 -------TYTELLKL-AVWQKNLSAVHEIWEDYIKH-----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 195 -------t~~~ll~~-~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (764)
.++.+-.. ....|+++.+.++-+..... ..+....+..+..+..-.|+.+.|..+..+..+..-.-+
T Consensus 452 ~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 452 RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 23333221 23578889999988888764 445667788888889999999999999888777433333
Q ss_pred chhcccccccccccccCCCccCCccccchhhhhhHHHHH--HHHHccCCH--HHHHHHHHHHHHCC--CCC----CcccH
Q 004269 262 LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI--HACGRTQNS--GLAEQLMLQMQSLG--LQP----SSHTY 331 (764)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~--~~a~~~~~~m~~~g--~~p----~~~~~ 331 (764)
.... ..|..+. ..+...|+. .+....|....... -+| -.-++
T Consensus 532 ~~~l----------------------------~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 532 VYHL----------------------------ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred cHHH----------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 2110 2344333 334556643 33333343333221 111 11233
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhhCC--C--CccHHHHH--
Q 004269 332 DGFIRAIVSD-RGLRNGMEVLKIMQQNNLKPQDSTIA--TLSVECSKALELDLAEALLDQISRCT--N--PKPFSAFL-- 402 (764)
Q Consensus 332 ~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~--~--~~~~~~li-- 402 (764)
..++.++.+. +...++..-++.-......|-..-+. .|+..+...|+.++|...++++.... . .+-|.+.+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 3444444431 11222222222222222222222222 66777888899999999888886532 1 22233222
Q ss_pred ---HHHHhcCCHHHHHHHHHH
Q 004269 403 ---AACDTMDKPERAIKIFAK 420 (764)
Q Consensus 403 ---~~~~~~~~~~~a~~l~~~ 420 (764)
.-....|+..++.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 123455676666655544
No 408
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.16 E-value=4.9e+02 Score=25.12 Aligned_cols=100 Identities=11% Similarity=-0.000 Sum_probs=55.4
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 308 (764)
+-+.|...|...+++.+..+++.++.+.....+.. . ...........|..=|..|....+
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe-------------d-------D~kKGtQLLEiYAlEIQmYT~qKn 206 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE-------------D-------DQKKGTQLLEIYALEIQMYTEQKN 206 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc-------------h-------hhhccchhhhhHhhHhhhhhhhcc
Confidence 33456777888888888888888887642222110 0 000111112467777778887777
Q ss_pred HHHHHHHHHHHHHCC-CCCCcccHHHHHHHHH-----hcCChhHHHH
Q 004269 309 SGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIV-----SDRGLRNGME 349 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~-----~~~~~~~a~~ 349 (764)
-.+-..+|++..... --|.+... -+|+-|. +.|.+++|-.
T Consensus 207 NKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 207 NKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred cHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 777777887765422 22333322 3444443 3456665543
No 409
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.70 E-value=1.4e+03 Score=30.19 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=90.6
Q ss_pred HHHHHhhCCcchHHHHHHhccccCC-CCChhcHHHHHH-HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHH-SLGADDFFHILN-YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
..+-.+.+.+.+|+-.++.-..... +.....+..++. .|+..++++....+...-.. +...++. |......|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-il~~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-ILEHEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-HHHHHhhc
Confidence 3455667888999999888422111 122334445555 99999999998877775211 2233433 44577889
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH-HHHHHhhcChhHHHHH
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL-LKLAVWQKNLSAVHEI 215 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~ 215 (764)
++..|...|+.+.+.+ ++....++.+++.....|.+..+.-..+..... ..+....++.+ +.+-=+.++++.....
T Consensus 1464 ~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred cHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 9999999999998654 233667887777777778887777755554432 22233333332 1222344555555544
Q ss_pred HH
Q 004269 216 WE 217 (764)
Q Consensus 216 ~~ 217 (764)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
No 410
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.46 E-value=6.5e+02 Score=28.42 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHCCCCccH---HHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChh----------hHHHHHHHHHHcCC
Q 004269 458 AKRINAIEMDMARNNIQHSH---ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----------TYNTVLHSLVEAQE 524 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~li~~~~~~~~ 524 (764)
+++...++..|...--.|++ .+...++-.|....+++...++.+....-||+. .|.-.++-=-+-|+
T Consensus 179 G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 179 GDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred cHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Confidence 45556667777766555543 445567777888899999999988776656432 23333333234477
Q ss_pred hHHHHHHHHHHHhCC--CCCCHHH-----HHHHH--HHHHhhCChhHHHHHHHHHHHCCCCCCHH
Q 004269 525 SHRAMEIFKQMKTCG--IPPNAAT-----YNIMI--DCCSIIRCFKSASALVSMMVRDGFYPQTM 580 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g--~~p~~~t-----~~~ll--~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 580 (764)
-++|+...-.|.+.. +.||... |.-+. +.|...+..+.|...|++.-+ +.|+..
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 788888877776542 6677653 22221 234455667788888887766 455543
No 411
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.27 E-value=8.5e+02 Score=27.58 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=41.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhc
Q 004269 624 ACEKGRIDVIEFIIEQMHQNKVQPDPS--TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAE 701 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (764)
+.--|+.++|..+.++|.... .|-.. -..++..+|+-.|+.....+++. -.+.............--.|+...
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh----~aVsD~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLH----VAVSDVNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhc----ccccccchHHHHHHHHHheeeEec
Confidence 444566677777888877532 22111 12233446666666555444443 112222222222222334455556
Q ss_pred cHHHHHHHHHHhhh
Q 004269 702 DSEAESRILQFCED 715 (764)
Q Consensus 702 ~~~~~~~~~~~~~~ 715 (764)
+++.....++.+..
T Consensus 586 dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSE 599 (929)
T ss_pred ChhhchHHHHHHhh
Confidence 66655555555544
No 412
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.17 E-value=8.7e+02 Score=27.67 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
......|..+.-.|++++|-...-.|.. -+..-|.--+..++..++... ++..++......+...|..+|-.
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e~~~l~~---Ia~~lPt~~~rL~p~vYemvLve 464 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAELDQLTD---IAPYLPTGPPRLKPLVYEMVLVE 464 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhccccccch---hhccCCCCCcccCchHHHHHHHH
Confidence 4556667777777777777777766653 145556666666665555432 22233333223445556666555
Q ss_pred HHh
Q 004269 203 AVW 205 (764)
Q Consensus 203 ~~~ 205 (764)
+..
T Consensus 465 ~L~ 467 (846)
T KOG2066|consen 465 FLA 467 (846)
T ss_pred HHH
Confidence 544
No 413
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.79 E-value=2.9e+02 Score=24.68 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=41.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004269 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 605 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
+.+.|++++..-. .++......++.-.|.++++++.+.+..++..|.+..|..+...|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445766665432 3334444445566788888888887777788888888888888887654
No 414
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.30 E-value=9.5e+02 Score=27.84 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=95.5
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCH--hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccccc
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSI--FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
=+.|...|+++.|.++-.. .|+. .++..-...|...+++..|-+++.++.+
T Consensus 365 Wk~yLd~g~y~kAL~~ar~-----~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~---------------------- 417 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIART-----RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS---------------------- 417 (911)
T ss_pred HHHHHhcchHHHHHHhccC-----CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----------------------
Confidence 3456667777777665432 2221 1233334456677788888888888754
Q ss_pred CCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHH-----HHHHHH-hcCChh----HH
Q 004269 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG-----FIRAIV-SDRGLR----NG 347 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-----ll~~~~-~~~~~~----~a 347 (764)
.|..+.--+....+.+ ++..|-.=+-..++|...+-.. ++..+. +.++.+ ++
T Consensus 418 -----------------~FEEVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~ 479 (911)
T KOG2034|consen 418 -----------------SFEEVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEA 479 (911)
T ss_pred -----------------hHHHHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhH
Confidence 6666666677777666 4444332222234444433222 222221 223322 22
Q ss_pred HHHHHH--------HHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHH
Q 004269 348 MEVLKI--------MQQ-NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418 (764)
Q Consensus 348 ~~~~~~--------~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~ 418 (764)
.+-++. +.. ....-+.....+....+...|+.+.+..+-.-+.. |..++.-+.+.+.+++|++++
T Consensus 480 ~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d------~~~vv~~~~q~e~yeeaLevL 553 (911)
T KOG2034|consen 480 LENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD------YEFVVSYWIQQENYEEALEVL 553 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 222211 111 11122333344555666777888888877777765 677888899999999999887
Q ss_pred HHH
Q 004269 419 AKM 421 (764)
Q Consensus 419 ~~m 421 (764)
..-
T Consensus 554 ~~~ 556 (911)
T KOG2034|consen 554 LNQ 556 (911)
T ss_pred Hhc
Confidence 765
No 415
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.21 E-value=2.7e+02 Score=21.51 Aligned_cols=43 Identities=5% Similarity=0.143 Sum_probs=27.5
Q ss_pred HHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004269 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 108 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 150 (764)
++|+-....|+..|+.+|..++..+.-.=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666666666777776666655555556666666666643
No 416
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.08 E-value=5.8e+02 Score=25.31 Aligned_cols=109 Identities=12% Similarity=0.033 Sum_probs=58.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.++..+-+.++.......++.+.. ...-...+..+...|++..|++++.+..+.- . +-.-|+++=. -.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~---L~ 170 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRH---LS 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHH---Hh
Confidence 445555555666666666665532 3344556777778899999999888776531 0 1011111100 01
Q ss_pred cChhHHHHHHHHHHh----c--CCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 207 KNLSAVHEIWEDYIK----H--YSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
.++++.....+.+.. . ..-|+..|..+..+|.-.|+...+.
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 122222222222221 1 3567777888888887777665543
No 417
>PRK12356 glutaminase; Reviewed
Probab=28.98 E-value=6.1e+02 Score=25.49 Aligned_cols=157 Identities=8% Similarity=0.025 Sum_probs=81.9
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhhCChhHHHHHHHHH
Q 004269 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA------TYNIMIDCCSIIRCFKSASALVSMM 570 (764)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~~ 570 (764)
..++++.+..|+-..||+++..-...|. +.|.. +...+|..-....+++..+++++++
T Consensus 86 ~~V~~~VG~EPSG~~FNsi~~Le~~~g~----------------P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ 149 (319)
T PRK12356 86 QAVREKIGADPTGLPFNSVIAIELHGGK----------------PLNPLVNAGAIATTSLVPGANSDERWQRILDGQQRF 149 (319)
T ss_pred HHHHHHhCCCCCCCCcchHHHhhccCCC----------------CCCccccHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 3456667777777777776543322222 22221 2222222211111233444455555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 004269 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP-HDV-LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP- 647 (764)
Q Consensus 571 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p- 647 (764)
....+..|..+|.+ =...|+...|+..+ |++.|.- .|+ .+.....+.|+-....+..-.+.-.+-..|+.|
T Consensus 150 ag~~l~~de~v~~S----E~~t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~ 223 (319)
T PRK12356 150 AGRELALSDEVYQS----EQTTNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPL 223 (319)
T ss_pred hCCCCccCHHHHHH----HHhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCC
Confidence 44345555555443 23445555555544 4444443 232 244455555555555555555555555556665
Q ss_pred ------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 648 ------DPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 648 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
+..+...++.....+|.|+.+-++.-++
T Consensus 224 tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~V 257 (319)
T PRK12356 224 TGKRVVDADNVPYILAEMTMEGLYERSGDWAYTV 257 (319)
T ss_pred CCCeecCHHHHHHHHHHHHHcCCccchhhHHHHh
Confidence 4445566777888899999988877654
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.91 E-value=2.4e+02 Score=22.06 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=17.0
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHh
Q 004269 233 FVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~ 256 (764)
+.......|+.++|...+++..+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344566778888888888887763
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.79 E-value=2.9e+02 Score=21.65 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=13.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 004269 620 ILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+...+...|+.++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556666666666666554
No 420
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.66 E-value=2.8e+02 Score=24.11 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=40.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004269 604 LVSLEGIPHDVLLYNTILKKACEK-GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 604 ~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
.+.+.|++++..= ..++..+... +..-.|.++++.+.+.+...+..|.+..|..+...|-+.
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445676665432 2333344443 456688888898888777778888888888888887654
No 421
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=28.53 E-value=7.9e+02 Score=28.81 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.+...+++.++.++.|+..+......++... .|+...++.+++++... ...+..|+..+...+.. .
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~-~---------- 246 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGV-T---------- 246 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcC-C----------
Confidence 3444555555554555554544444443322 46677777777665532 22334444444332221 1
Q ss_pred HHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCc
Q 004269 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (764)
+......++++.. .++...++.+++++.+.|..+.
T Consensus 247 --------~~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 247 --------DSALIDEAVDALA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred --------CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 1222223334333 5778888888888887666543
No 422
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=28.44 E-value=6.7e+02 Score=25.85 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=47.8
Q ss_pred HHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHH------------HHHHHHcCChHHHHHHHHHHHhCCC-CCCHH----
Q 004269 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV------------LHSLVEAQESHRAMEIFKQMKTCGI-PPNAA---- 545 (764)
Q Consensus 483 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~---- 545 (764)
|...+-.+|++++|..++... .+.||.++ +..|...+++-.|--+-+++...-+ .||..
T Consensus 137 L~~ike~~Gdi~~Aa~il~el----~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKl 212 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCEL----QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKL 212 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHH
Confidence 667788899999999998765 33455443 3344455555555544444433222 23322
Q ss_pred -HHHHHHHHHHhhCChhHHHHHHHHHHH
Q 004269 546 -TYNIMIDCCSIIRCFKSASALVSMMVR 572 (764)
Q Consensus 546 -t~~~ll~~~~~~g~~~~a~~~~~~~~~ 572 (764)
-|..++....+.+.+=.+.+.|+....
T Consensus 213 kyY~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 213 KYYELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 255555555555555555555555443
No 423
>PRK09687 putative lyase; Provisional
Probab=28.38 E-value=5.9e+02 Score=25.12 Aligned_cols=17 Identities=18% Similarity=-0.031 Sum_probs=7.3
Q ss_pred cHHHHHHHHHHHHccCC
Q 004269 121 NNKCYLLMMQALCKGGY 137 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~ 137 (764)
|+..-...+.+++..|+
T Consensus 67 d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 67 NPIERDIGADILSQLGM 83 (280)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33444444444444443
No 424
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=28.35 E-value=3.1e+02 Score=21.97 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=27.2
Q ss_pred HHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004269 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
..+...|++++|..+.+.. ..||...|-++-. .+.|..+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~-~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL-CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC-CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3345556666666555544 3556555555433 24455555555555555554
No 425
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.17 E-value=4.8e+02 Score=25.87 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 529 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
.++|+.|.+.++.|.-..|.-+.-.+.+.=.+.....+|+.+... ..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 577888888888888888877777777777788888888888753 222555665555
No 426
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=28.16 E-value=5.6e+02 Score=25.55 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004269 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVL---LYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
..|..+-.+.|+..+|.+.++.+.+. .|=.. +-..||.+|....-+.+...++-+.-
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555677788888777776532 23221 33456666666655555555554443
No 427
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.11 E-value=2.7e+02 Score=23.74 Aligned_cols=83 Identities=8% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CCChhcHHHHHHHhhCC---CChhHHHHHHHHHHH-cCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh
Q 004269 84 SLGADDFFHILNYCARS---PDPLFVMETWRMMEE-KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP 159 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 159 (764)
.++..+-..+..++.++ .|..+.+.+++.+.+ ..-.......-.|.-++.+.++++.++++.+.+.+..+-.+...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Q ss_pred hhHHHHH
Q 004269 160 VYNSFLG 166 (764)
Q Consensus 160 ~~~~li~ 166 (764)
.....|.
T Consensus 109 ~Lk~~ie 115 (149)
T KOG3364|consen 109 ELKETIE 115 (149)
T ss_pred HHHHHHH
No 428
>PRK10941 hypothetical protein; Provisional
Probab=27.92 E-value=4.5e+02 Score=25.75 Aligned_cols=79 Identities=11% Similarity=-0.207 Sum_probs=55.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKL 202 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~ 202 (764)
..+.+-.+|.+.++++.|.++.+.+..-. +.+..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 44567778899999999999999987532 2333345555556889999999999998887653 23555555555554
Q ss_pred HH
Q 004269 203 AV 204 (764)
Q Consensus 203 ~~ 204 (764)
..
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 429
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.47 E-value=1.2e+03 Score=28.25 Aligned_cols=123 Identities=7% Similarity=-0.077 Sum_probs=68.8
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC---ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKE---IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
|..+++.+-+.+..+.+.++-...++.= .+.-..+++.+.+.....|.+-+|-+.+-+.+.. .....+..-|+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds---errrdcLRqlvi 1062 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS---ERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH---HHHHHHHHHHHH
Confidence 6777777777788888777777666541 1112346777777778888888777665443221 112235566666
Q ss_pred HHhccCCHH------------HHHH-HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHH
Q 004269 167 ACAKLHSMV------------HANL-CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 167 ~~~~~g~~~------------~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
.+..+|.++ +... +++..-+..+.-...-|..|-..+...+++.+|-.+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 777776653 3333 222222222222223344444445666777666553
No 430
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.39 E-value=6.2e+02 Score=25.12 Aligned_cols=157 Identities=13% Similarity=0.012 Sum_probs=88.6
Q ss_pred CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 83 HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
+..+......+...+ .||...|+..++.+.......+. . .| ..+...+.+..-.- ...-+-...-
T Consensus 63 ~~i~~~al~~ia~~a--~GDaR~aLN~LE~a~~~~~~~~~-~---~i-------t~~~~~~~~~~~~~--~yDk~gd~HY 127 (300)
T PRK14700 63 FKIDDGLYNAMHNYN--EGDCRKILNLLERMFLISTRGDE-I---YL-------NKELFDQAVGETSR--DFHREGKEFY 127 (300)
T ss_pred CCcCHHHHHHHHHhc--CCHHHHHHHHHHHHHhhccccCC-C---cc-------CHHHHHHHHhHHHh--cccCCcchhH
Confidence 456777777777754 48999999999886532100000 0 00 12222232221110 1111112333
Q ss_pred HHHHHHhc---cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcCh-----hHHHHHHHHHHh-cCCCCHhhHHHH
Q 004269 163 SFLGACAK---LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL-----SAVHEIWEDYIK-HYSLSIFSLRKF 233 (764)
Q Consensus 163 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~-~~~~~~~~~~~l 233 (764)
-+|+++-+ ..|.+.|+-.+..|.+.|-.|....-..++-++-.-|.- ..|...++.... |.|--.......
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~a 207 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQA 207 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 45667654 478999999999999999888888888888777776643 345555555554 344444444444
Q ss_pred HHHhhccCCHHHHHHHHHHHH
Q 004269 234 VWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~~~ 254 (764)
+-.++.+-+...+...++...
T Consensus 208 viyLA~aPKSNs~y~A~~~A~ 228 (300)
T PRK14700 208 AIYLAVAPKSNACYKALAQAQ 228 (300)
T ss_pred HHHHHcCCCchHHHHHHHHHH
Confidence 444455555555544444443
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.31 E-value=5.5e+02 Score=24.41 Aligned_cols=92 Identities=11% Similarity=0.097 Sum_probs=63.0
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhc-------------CCCCHhhHHHHH
Q 004269 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-------------YSLSIFSLRKFV 234 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~li 234 (764)
|.+..+..--.++++-.+..++.-+......++ +...||..+|...+..-..+ ..|.+...-.++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 455555444455555555555655555555554 45678888888777666543 357777777777
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 235 WSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
..+. .+++++|.+++.++-+.|..|.+
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 7554 57899999999999999999887
No 432
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.24 E-value=5.6e+02 Score=24.49 Aligned_cols=22 Identities=5% Similarity=-0.152 Sum_probs=12.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 004269 298 DVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m 319 (764)
.+-.++.....++.|+..+.+.
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHH
Confidence 3444455555666666666555
No 433
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.16 E-value=3e+02 Score=21.37 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004269 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 106 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.+++....+.|+ .+......+-.+-...|+.+.|+++++.+. + .|+ .|..++.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r---g~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-Q---KEG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-c---CCc--HHHHHHHHHHHcCchhhhh
Confidence 5567777777774 233344444333345677888888888775 3 233 6777777777776655443
No 434
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.78 E-value=8.2e+02 Score=26.27 Aligned_cols=208 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCChhhHHH--HHHH-----HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHH
Q 004269 178 NLCLDLMDSRMVGKNEVTYTE--LLKL-----AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~--ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
.++++.+.+.|..|+...... .+.. ....++.+-+.-+++.-..-...+..-.+.|..+.. ....-.+++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~---~~~~~~~iv 124 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS---KKSNSYSIV 124 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh---cccChHHHH
Q ss_pred HHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004269 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 330 (764)
+.+.+.|..++.... .-.+.+...+..|. .-.++.+.+.+.|..++...
T Consensus 125 ~~Ll~~g~~~~~~~~-----------------------------~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d 173 (480)
T PHA03100 125 EYLLDNGANVNIKNS-----------------------------DGENLLHLYLESNK--IDLKILKLLIDKGVDINAKN 173 (480)
T ss_pred HHHHHcCCCCCccCC-----------------------------CCCcHHHHHHHcCC--ChHHHHHHHHHCCCCccccc
Q ss_pred H--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHhcCC--HHHHHHHHHHHhhCC--CCc
Q 004269 331 Y--DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI--------ATLSVECSKALE--LDLAEALLDQISRCT--NPK 396 (764)
Q Consensus 331 ~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~g~--~~~a~~~~~~~~~~~--~~~ 396 (764)
- .+.+..++..| -.++.+.+.+.|..++.... ...+...+..|. .+.+..+++.-.... +..
T Consensus 174 ~~g~tpL~~A~~~~----~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~ 249 (480)
T PHA03100 174 RYGYTPLHIAVEKG----NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY 249 (480)
T ss_pred CCCCCHHHHHHHhC----CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCC
Q 004269 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPD 428 (764)
Q Consensus 397 ~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~ 428 (764)
-++.|..+..... .++++.+.+ |..|+
T Consensus 250 g~TpL~~A~~~~~-----~~iv~~Ll~~gad~n 277 (480)
T PHA03100 250 GFTPLHYAVYNNN-----PEFVKYLLDLGANPN 277 (480)
T ss_pred CCCHHHHHHHcCC-----HHHHHHHHHcCCCCC
No 435
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.72 E-value=3.5e+02 Score=22.00 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004269 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (764)
..++|..+.+-+...+- -....--+-+..+.+.|++++| -..-.....||...|-+|-.. +.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAALCAW--KLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHH
Q 004269 604 LVSLEGIPHDVLLYNT 619 (764)
Q Consensus 604 ~m~~~~~~p~~~~~~~ 619 (764)
++..+| .|....|..
T Consensus 94 rla~~g-~~~~q~Fa~ 108 (116)
T PF09477_consen 94 RLASSG-SPELQAFAA 108 (116)
T ss_dssp HHCT-S-SHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHH
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.70 E-value=4e+02 Score=29.43 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=56.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 298 DVIHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLR------NGMEVLKIMQQNNLKPQDSTIATL 369 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 369 (764)
+|..+|..+|++-.+.++++.....+ -+.=...||.-|+...+.|.++ .+.++++... +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999998887643 1112235677777788888754 2333443333 55577888877
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 004269 370 SVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~~~ 390 (764)
+.+-...-+-....-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554333333333444443
No 437
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.65 E-value=7.8e+02 Score=25.97 Aligned_cols=35 Identities=17% Similarity=0.036 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004269 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 340 (764)
..+.+.|+..+..|.+.|..|....-..++.++-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46777888888888877766665444444444433
No 438
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=26.56 E-value=5.8e+02 Score=26.85 Aligned_cols=32 Identities=6% Similarity=0.079 Sum_probs=22.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004269 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361 (764)
Q Consensus 330 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (764)
++.+.|..+.+.+++..|-.+-+++++.+..+
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44556666778888888888888888776544
No 439
>PRK09857 putative transposase; Provisional
Probab=26.47 E-value=4.4e+02 Score=26.16 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=27.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004269 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648 (764)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 648 (764)
.+.|+.++..++++.+.+. .++......++..-+...|.-+++.++..+|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445444445555444432 122222333444444444544555666666666665544
No 440
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.42 E-value=4e+02 Score=23.86 Aligned_cols=37 Identities=22% Similarity=0.064 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
++.-.|.++++.+.+.+...+..|.--.|..+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3333445555555444433343333333334444443
No 441
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.01 E-value=1.2e+03 Score=27.90 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhC--ChhHHHHHHHHHHHC
Q 004269 546 TYNIMIDCCSIIR--CFKSASALVSMMVRD 573 (764)
Q Consensus 546 t~~~ll~~~~~~g--~~~~a~~~~~~~~~~ 573 (764)
-+..+|.+|.+.+ +++.|+.+...+.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3456667777666 777777777777654
No 442
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=25.98 E-value=76 Score=26.80 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=12.0
Q ss_pred CChhHHHHHHHHHHHcCcccc
Q 004269 101 PDPLFVMETWRMMEEKEIGLN 121 (764)
Q Consensus 101 ~~~~~a~~~~~~m~~~~~~~~ 121 (764)
|.-..|-.+|..|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344445666666666665554
No 443
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.71 E-value=9.9e+02 Score=26.86 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=22.9
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
....++.+.. .|+...++.+++++.+.|..+..
T Consensus 253 ~i~~LldaL~-~~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 253 HVFRLIDALA-QGDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 3344444444 47889999999999987776654
No 444
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=25.69 E-value=9.1e+02 Score=26.47 Aligned_cols=181 Identities=9% Similarity=0.025 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 004269 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLG--TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI--PPNAATYNIMI 551 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~--~p~~~t~~~ll 551 (764)
+...|...++--.+.|+.+.+.-.|+....+-. ...|--.+.-....|+.+-|..++..-.+--+ .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345566666777777888888888877633221 12344444444444777777766665444322 33334444433
Q ss_pred HHHHhhCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHHH---
Q 004269 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMT-YTALIKILLDYGDFDEAL---NLLDLVSLEGIPHDVLLYNTILKKA--- 624 (764)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~-~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~~--- 624 (764)
. -..|+.+.|..+++.+.+.- |+..- -..-+....+.|..+.+. +++...... +-+..+.+.+.--+
T Consensus 376 ~--e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 376 E--ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARL 449 (577)
T ss_pred H--HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHH
Confidence 2 34589999999999998763 55332 222344556778888887 444444322 22322333332222
Q ss_pred --HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004269 625 --CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663 (764)
Q Consensus 625 --~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 663 (764)
.-.++.+.|..++.++.+ -+.++...|..++......+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~-~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEAND-ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhh-cCCccHHHHHHHHHHHHhCC
Confidence 335788999999999986 35566677777777554444
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.66 E-value=3.7e+02 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m 148 (764)
|..|+..|...|..++|.+++.+.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHH
Confidence 444444444445555555544444
No 446
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.60 E-value=7.2e+02 Score=25.24 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 660 (764)
-|-++.......|.++..+.+|++.+..|..|-...-..++..+.
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 566666666777777777777777777777776666666665544
No 447
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.49 E-value=1.9e+02 Score=20.68 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=26.9
Q ss_pred HHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhh-----CCCChhHHHHH
Q 004269 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA-----RSPDPLFVMET 109 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~ 109 (764)
.+-..|++-+|.++++.+-.....+....+..+|+++. +.|+...|..+
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 35567788888888888775443344445555555433 23555555443
No 448
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.43 E-value=3.2e+02 Score=21.12 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=23.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004269 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (764)
++|+.....|+..|+..|..+++.+.-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555666666666655555554444555555555554
No 449
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.38 E-value=4.2e+02 Score=22.96 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
.-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 33444444444443333333333333333444433
No 450
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=25.32 E-value=9.1e+02 Score=26.33 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCC-CCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV-GKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
.++...++....++.|+..+......++. ...|++..|+..++.+...+- .....|...+-..+ .
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~ll-g----------- 254 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQML-G----------- 254 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHH-C-----------
Confidence 34445555555555555555444444443 234677777777766644211 11122222221111 1
Q ss_pred HHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
..+....-.|+.+. ..|+...|+.+++++...|..|..
T Consensus 255 -------~~~~~~if~L~~ai-~~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 255 -------LVDSSVIIEFVEYI-IHRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred -------CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 12222333333333 448999999999999988877654
No 451
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.03 E-value=5.4e+02 Score=23.60 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHH
Q 004269 242 DLKSAYETLQHMVA 255 (764)
Q Consensus 242 ~~~~A~~~~~~~~~ 255 (764)
.+.+|.-++..+..
T Consensus 84 EyvEA~~l~~~l~~ 97 (204)
T COG2178 84 EYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHHHHhc
Confidence 34455555555544
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.40 E-value=8.2e+02 Score=25.46 Aligned_cols=173 Identities=11% Similarity=0.121 Sum_probs=81.6
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCH
Q 004269 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS 309 (764)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 309 (764)
+.-+..-|..+|+++.|++.+.+...---.. ..+ ...|-.+|..-.-.|+|
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~----------------------------khv-Inm~ln~i~VSI~~~nw 203 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSA----------------------------KHV-INMCLNLILVSIYMGNW 203 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcch----------------------------HHH-HHHHHHHHHHHHhhcch
Confidence 4445566777888888887777754311100 011 13556666666667777
Q ss_pred HHHHHHHHHHHHC---------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHH
Q 004269 310 GLAEQLMLQMQSL---------GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN------LKPQDSTIATLSVECS 374 (764)
Q Consensus 310 ~~a~~~~~~m~~~---------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~ 374 (764)
......-.+..+. -+.+-..++..+...+. +++..|...|-...... +.|...+.-..+.+.+
T Consensus 204 ~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALA 281 (466)
T KOG0686|consen 204 GHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALA 281 (466)
T ss_pred hhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhc
Confidence 6666655555442 12222333333333332 35555555443322111 2233332223333333
Q ss_pred hcCCHHHHHHH-----HHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCCHHHHHHHH
Q 004269 375 KALELDLAEAL-----LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK------LRPDIRTYELLF 436 (764)
Q Consensus 375 ~~g~~~~a~~~-----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~------~~p~~~t~~~ll 436 (764)
.-++-+--..+ |....+. .+..+..+-.-| .+++...++++++++.. +.|...+.-.+|
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel-~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLEL-EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhc-ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 33332222121 2222222 333344333333 46788888998888763 445555554444
No 453
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.32 E-value=1.6e+02 Score=24.09 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
++......+.+-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555566666666666654445554444555666555433
No 454
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.99 E-value=1.7e+02 Score=21.14 Aligned_cols=25 Identities=4% Similarity=0.048 Sum_probs=9.2
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHH
Q 004269 548 NIMIDCCSIIRCFKSASALVSMMVR 572 (764)
Q Consensus 548 ~~ll~~~~~~g~~~~a~~~~~~~~~ 572 (764)
+.++..+++-.-++.+...+.++.+
T Consensus 12 ~Ql~el~Aed~AieDtiy~L~~al~ 36 (65)
T PF09454_consen 12 NQLYELVAEDHAIEDTIYYLDRALQ 36 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 455
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=23.91 E-value=4.2e+02 Score=22.32 Aligned_cols=59 Identities=20% Similarity=0.115 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 004269 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN-TILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m 640 (764)
..+..++..++.-.|..++|.++++.. +..++-...| -++..|.+..+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~F---kWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKF---KWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344555666666667777777766653 2233333333 3666777766666655554443
No 456
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.82 E-value=1.8e+02 Score=23.87 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=33.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004269 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
++......+..-.|.++++.+.+.+..++..|.+..|..+...|-..+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 344444555556778888888877767778887777777777776543
No 457
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.60 E-value=7.7e+02 Score=24.88 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 256 (764)
+.-..++++.++..+.+......+|..+.+..+.+...+-++++...
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45567888888877888888888999999998888888889998873
No 458
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=23.54 E-value=9.8e+02 Score=26.07 Aligned_cols=102 Identities=16% Similarity=0.051 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+.++....++.+..+.++.-+...+..+. ....|....++.+++++...|- +.+++..+..... .-+.+....++
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG-~~~~~~~~~~~ 253 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLG-LTDIEKLLSLL 253 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhC-CCCHHHHHHHH
Confidence 45667777788877777776665555553 3557888999999999988653 4555544433221 11111222222
Q ss_pred HHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+ ....++...++..++++.+.|..|..
T Consensus 254 ~-------------------~i~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 254 E-------------------AILKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred H-------------------HHHccCHHHHHHHHHHHHHhCcCHHH
Confidence 2 23467899999999999998877765
No 459
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.31 E-value=7.1e+02 Score=24.39 Aligned_cols=159 Identities=13% Similarity=-0.018 Sum_probs=87.1
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhc-------HHHHHHHhhCCCChhHHHHHHHHHHHc----CccccHHHHH
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADD-------FFHILNYCARSPDPLFVMETWRMMEEK----EIGLNNKCYL 126 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~ 126 (764)
......+.++.++|+..|..+...|+..+..+ ...+.+.|...|+.....+......+. .-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 35567788999999999999998887666544 455677777788777655554433321 1122344555
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHhh----hcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH----HhhcCCCCChhhHH
Q 004269 127 LMMQALCKG-GYLEEASNLIYFLGE----RYGIYPILPVYNSFLGACAKLHSMVHANLCLDL----MDSRMVGKNEVTYT 197 (764)
Q Consensus 127 ~li~~~~~~-g~~~~A~~~~~~m~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~ 197 (764)
+||..+... ..++.-+++.+...+ ..........-..++..+.+.|.+.+|+.+... +++..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 566555443 334444444443321 000001111224477778888888888776543 34444455544433
Q ss_pred HHH-HHHHhhcChhHHHHHH
Q 004269 198 ELL-KLAVWQKNLSAVHEIW 216 (764)
Q Consensus 198 ~ll-~~~~~~~~~~~a~~~~ 216 (764)
.+= ++|-..+++.++..-+
T Consensus 169 llESKvyh~irnv~KskaSL 188 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHH
Confidence 321 2344444554444433
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.88 E-value=3.1e+02 Score=26.41 Aligned_cols=57 Identities=12% Similarity=-0.090 Sum_probs=34.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh----cC-CCCChhhHHHHHHHHHhhcChhHHHHHHHH
Q 004269 162 NSFLGACAKLHSMVHANLCLDLMDS----RM-VGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
-.|..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+--+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456667777777777777776632 12 234455566666667777777766654433
No 461
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.72 E-value=7.1e+02 Score=24.18 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCC-CCC-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 299 VIHACGRTQNSGLAEQLMLQMQSLG-LQP-----SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 299 li~~~~~~~~~~~a~~~~~~m~~~g-~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
|+..|.+.|+++.|-.++--+...+ ... +...-..++......++|+.+.++.+-+...
T Consensus 185 Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 185 LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKAL 249 (258)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4444555555555555444443322 111 1122233445555556666666666555543
No 462
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.64 E-value=1e+03 Score=25.98 Aligned_cols=100 Identities=9% Similarity=-0.064 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
++..+.+..+.++.|+..+......++.. ..|+...|+.+++.....| ....|...+-..+
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~--~~~It~~~V~~~l--------------- 241 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYG--NGKVLIADVKTML--------------- 241 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHH---------------
Confidence 34444445554455555554444444433 2477777777776655433 1222322222211
Q ss_pred HHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
...+......++.+.. .++.+.+..+++.+.+.|..+..
T Consensus 242 ----g~~~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 242 ----GTIEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred ----CCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 1223333344444443 48889999999999998877654
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.56 E-value=4.7e+02 Score=21.98 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHH
Q 004269 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 245 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 318 (764)
.+..+|..|..+|+--.. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~------------------------------A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKL------------------------------ALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTB------------------------------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHH------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788889988887766554 25778888888888999999888865
No 464
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.55 E-value=1.4e+03 Score=27.58 Aligned_cols=124 Identities=13% Similarity=0.120 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCCCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 004269 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFY---PQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL----LY 617 (764)
Q Consensus 546 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~ 617 (764)
-|-.+++.+-..+..+.+.++-..+++. .. |+ ..+++++.+.....|.+-+|.+.+-+ .||.. ..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 3666777777777888877777666654 12 22 45677888888888888888777654 45543 45
Q ss_pred HHHHHHHHHcCCHH------------HHHH-HHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 618 NTILKKACEKGRID------------VIEF-IIEQMHQNKVQPDPST-CHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 618 ~~li~~~~~~g~~~------------~a~~-~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
..|+...+..|.++ +... +++..-+ ........ |.-|..-+...++|.+|-.+.-+..+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaR-s~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAAR-SSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhh-cCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 55666666666653 2233 2222222 22223333 44444556788888888776555443
No 465
>PRK09857 putative transposase; Provisional
Probab=22.27 E-value=5.8e+02 Score=25.36 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004269 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613 (764)
Q Consensus 547 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 613 (764)
+..++......++.++..++++.+.+. .........++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555566666667777666654 222333344566666667777778888888888887655
No 466
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.04 E-value=1e+03 Score=25.87 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=23.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
...++.+. ..++.+.|..+++.+...|..|..
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAART 276 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 34444444 558999999999999987766543
No 467
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.73 E-value=2e+02 Score=20.55 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=21.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-----hcCChhHHHHH
Q 004269 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-----SDRGLRNGMEV 350 (764)
Q Consensus 304 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-----~~~~~~~a~~~ 350 (764)
...|++-+|.++++++-.....|....+..+|..++ +.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345666666666666654322223334444444332 34455444443
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.49 E-value=2e+02 Score=20.86 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 577 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
|+...++.++..+++-.-+++++..+.+....|. -+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4444555566666655556666666666665552 344444444444433
No 469
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=20.81 E-value=93 Score=22.36 Aligned_cols=24 Identities=21% Similarity=-0.061 Sum_probs=16.8
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCh
Q 004269 135 GGYLEEASNLIYFLGERYGIYPIL 158 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~ 158 (764)
.-+++.|...|.++.....++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 347788888888877666666654
No 470
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.64 E-value=3.9e+02 Score=27.90 Aligned_cols=101 Identities=15% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHh----------------hHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 191 KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF----------------SLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
|+......++..+-..-+-....+.++...++..|+.. +.-.|+++++-.||+..|+++++.+.
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred Hhhcc-----CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 255 ALAMM-----GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 255 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
-.... |...+. +|--+.-+|.-.+++.+|.+.|....
T Consensus 150 l~~~~l~~~V~~~~is-----------------------------~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHIS-----------------------------TYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchhee-----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.59 E-value=1.8e+02 Score=24.13 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004269 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
.++......+..-.|.++++.+.+.+...+..|.+..|..+...|-..+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 4555556666677888888988888877888887777777777776444
No 472
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=1.1e+03 Score=25.74 Aligned_cols=180 Identities=13% Similarity=-0.026 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccch--hhhhccccCCchh------------hhhhhHHHHHHHHHhhCCcc
Q 004269 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLEL--SRTLTTTMGLNEE------------SISKATQMQIVDALCRGERS 69 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~--~r~~~~~~~~~p~------------~~~~~~~~~i~~~~~~~~~~ 69 (764)
|=-..+|.-+...+..+|+.+-+. .++++... .|.++........ ..-..+...+..+.+.|-|.
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aa-dLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAA-DLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHH-HHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Q ss_pred hHHHHHHhccccCCCCChhcHHHHHHHhh-CCCChhHHHHHHHHHHHcC---ccccHHHHHHHHHHHHccCC--------
Q 004269 70 RASHLLLNLGHAHHSLGADDFFHILNYCA-RSPDPLFVMETWRMMEEKE---IGLNNKCYLLMMQALCKGGY-------- 137 (764)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~-------- 137 (764)
-|.+...-+.+....-|+.....++..|+ +..++.-.+++++.....+ ..||-..-.+|...|.....
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHH
Q ss_pred --HHHHHHHHH----HHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHH
Q 004269 138 --LEEASNLIY----FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 138 --~~~A~~~~~----~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
+..|.+.|- ++.+.-.+.|+..+-+.=+.+......-..|+..+-.|
T Consensus 440 ~~l~qAl~~~P~vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~lv~l 492 (665)
T KOG2422|consen 440 NALLQALKHHPLVLSELLDELLLGDDALTKDLKFDGSSAENSELPALMLLVKL 492 (665)
T ss_pred HHHHHHHHhCcHHHHHHHHhccCCchhhhhhhcccccccccccchHHHHHHHH
No 473
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.55 E-value=9.7e+02 Score=24.91 Aligned_cols=123 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChh--hhHHHHHHHhcc--CCHHHHHHHHHHHhhcCCC--CChhhHHHHHHH
Q 004269 129 MQALCKGGYLEEASNLIYFLGERYGIYPILP--VYNSFLGACAKL--HSMVHANLCLDLMDSRMVG--KNEVTYTELLKL 202 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~ 202 (764)
+..+.+.+++..|.++|+.+.++ ++++.. .+..+..+|... -++.+|.+.|+........ -....+..++..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~ 215 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEV 215 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc---cCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR---LRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~ 255 (764)
.-....+......-..-.+.. .......|+....+ .|+++.|...+=++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~--~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 216 LKALESILSALEDKKQRQKKL--YYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHHhhccchhhhhcccccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 474
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.55 E-value=6.7e+02 Score=23.01 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=47.9
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHH
Q 004269 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 310 (764)
-+++-.|.+.-++.+..++++.|.+..+.-+. +.|.....+... |- ..-|.....+.+.|..|
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~-----LKGL~g~e~~as---------rC---qivn~AaEiFL~sgsid 198 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS-----LKGLTGPEKLAS---------RC---QIVNIAAEIFLKSGSID 198 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----ccCccCccccCc---------hh---hhHHHHHHHHHHcCCch
Confidence 35666788888999999999999886554433 122222222111 11 25677788899999999
Q ss_pred HHHHHHHH
Q 004269 311 LAEQLMLQ 318 (764)
Q Consensus 311 ~a~~~~~~ 318 (764)
.|+.++++
T Consensus 199 GA~~vLre 206 (233)
T PF14669_consen 199 GALWVLRE 206 (233)
T ss_pred HHHHHHhc
Confidence 99988874
No 475
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=20.47 E-value=7.6e+02 Score=23.64 Aligned_cols=118 Identities=10% Similarity=0.002 Sum_probs=68.8
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHH
Q 004269 554 CSIIRCFKSASALVSMMVRDGFYPQTMTY-TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK-KACEKGRID 631 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~ 631 (764)
|.....++.|..-|.+.+. +.|++.+| +.=+.++.+..+++.+..=-.+.+ .+.||.+--..++. .......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral--ql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL--QLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH--hcChHHHHHHHHHHHHHHhhcccc
Confidence 5566677778876655555 45776444 555666777777777776666655 34666654433333 334556678
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 632 VIEFIIEQMHQ----NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 632 ~a~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
+|+..+.+..+ ..+.|-......|..+=-..=...+..++.+++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88888777743 344445555555555433333344444555544
No 476
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=20.12 E-value=3.5e+02 Score=20.10 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
.+.|..++..+.... ..++..||++...+
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L 41 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLL 41 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHH
Confidence 344444444443322 33445555544433
Done!