Query 004269
Match_columns 764
No_of_seqs 590 out of 4130
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 19:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-37 1.3E-41 344.0 41.1 501 64-677 65-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-36 5.7E-41 338.9 40.7 497 120-729 82-593 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.3E-29 8E-34 267.9 23.3 195 397-662 28-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 6.1E-28 2.1E-32 257.0 23.9 182 509-690 26-216 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 6.6E-23 2.3E-27 215.2 46.1 376 167-663 8-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.8E-23 2.3E-27 215.1 45.9 285 99-422 11-298 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.1E-19 3.6E-24 198.6 40.7 340 52-422 6-365 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.1E-19 1.1E-23 194.9 40.6 250 376-677 202-477 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 7.5E-19 2.6E-23 188.3 37.4 337 44-421 19-406 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.3E-18 4.6E-23 191.0 38.5 333 51-423 24-372 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 5.1E-19 1.7E-23 189.6 32.8 320 69-430 9-363 (450)
12 3fp2_A TPR repeat-containing p 99.8 2.9E-18 1E-22 188.3 34.2 430 87-642 25-490 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 3.9E-16 1.3E-20 161.3 33.9 311 53-392 4-335 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 4.5E-13 1.6E-17 150.9 57.2 556 56-738 989-1582(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 1.2E-15 4.3E-20 157.5 34.3 305 86-429 2-339 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 3E-13 1E-17 152.3 54.3 556 9-671 987-1585(1630)
17 3hym_B Cell division cycle pro 99.8 9.6E-16 3.3E-20 156.4 30.8 284 85-405 20-314 (330)
18 3spa_A Mtrpol, DNA-directed RN 99.7 3.6E-18 1.2E-22 185.8 12.5 150 509-663 127-286 (1134)
19 3hym_B Cell division cycle pro 99.7 2.5E-15 8.5E-20 153.3 30.6 297 53-379 23-321 (330)
20 2xm6_A Protein corresponding t 99.7 2E-13 6.9E-18 147.4 46.4 337 206-644 56-433 (490)
21 3spa_A Mtrpol, DNA-directed RN 99.7 8.1E-18 2.8E-22 183.1 11.2 126 541-666 124-253 (1134)
22 1fch_A Peroxisomal targeting s 99.7 1.2E-15 4.2E-20 158.3 26.9 258 62-356 35-313 (368)
23 1fch_A Peroxisomal targeting s 99.7 8.4E-16 2.9E-20 159.6 25.0 292 16-352 34-354 (368)
24 2ooe_A Cleavage stimulation fa 99.7 1.2E-13 4E-18 150.8 43.1 163 511-677 323-491 (530)
25 2xm6_A Protein corresponding t 99.7 1.1E-12 3.8E-17 141.5 49.5 353 224-679 36-433 (490)
26 1b89_A Protein (clathrin heavy 99.7 2.1E-15 7.3E-20 152.3 25.5 289 99-502 15-307 (449)
27 4eqf_A PEX5-related protein; a 99.7 2.4E-15 8.1E-20 156.0 23.9 266 87-388 65-352 (365)
28 2ooe_A Cleavage stimulation fa 99.7 8.9E-13 3E-17 143.9 44.1 398 181-678 2-454 (530)
29 4eqf_A PEX5-related protein; a 99.7 2.4E-15 8.3E-20 155.9 22.1 265 121-420 64-352 (365)
30 1b89_A Protein (clathrin heavy 99.7 6.4E-15 2.2E-19 148.9 23.6 281 64-417 15-304 (449)
31 3cv0_A Peroxisome targeting si 99.7 1.2E-14 4.3E-19 147.8 25.2 203 48-255 17-234 (327)
32 3cv0_A Peroxisome targeting si 99.7 2.3E-14 7.9E-19 145.8 26.3 265 86-387 20-310 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 4.3E-14 1.5E-18 140.3 26.7 253 14-322 6-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.6 5.5E-14 1.9E-18 139.6 24.9 256 59-358 6-265 (291)
35 4g1t_A Interferon-induced prot 99.6 3.1E-12 1.1E-16 137.5 35.0 126 507-644 332-460 (472)
36 4g1t_A Interferon-induced prot 99.6 9.3E-12 3.2E-16 133.8 36.1 288 85-423 49-362 (472)
37 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.4E-12 4.9E-17 128.8 20.7 247 99-418 17-269 (275)
38 2pl2_A Hypothetical conserved 99.5 2.8E-12 9.6E-17 121.3 20.3 198 157-390 4-212 (217)
39 3uq3_A Heat shock protein STI1 99.5 6.3E-12 2.2E-16 122.7 23.1 224 89-356 7-235 (258)
40 3uq3_A Heat shock protein STI1 99.5 8E-12 2.7E-16 122.0 23.1 226 52-322 5-236 (258)
41 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-11 5.5E-16 119.4 24.6 210 47-262 32-242 (252)
42 2pl2_A Hypothetical conserved 99.5 4.3E-12 1.5E-16 120.1 19.7 196 53-254 6-212 (217)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.1E-12 2.1E-16 124.2 21.1 250 64-351 17-269 (275)
44 3e4b_A ALGK; tetratricopeptide 99.4 5.2E-11 1.8E-15 126.3 27.8 223 295-574 143-388 (452)
45 2vq2_A PILW, putative fimbrial 99.4 4.6E-11 1.6E-15 113.7 24.1 205 52-262 8-215 (225)
46 3u4t_A TPR repeat-containing p 99.4 3.9E-11 1.3E-15 118.2 24.1 234 90-358 6-251 (272)
47 2vq2_A PILW, putative fimbrial 99.4 5.3E-11 1.8E-15 113.3 24.1 201 86-321 7-210 (225)
48 2ho1_A Type 4 fimbrial biogene 99.4 4.2E-11 1.4E-15 116.5 23.8 201 87-322 37-238 (252)
49 2h6f_A Protein farnesyltransfe 99.4 6.6E-11 2.3E-15 121.3 24.9 233 88-358 98-349 (382)
50 3e4b_A ALGK; tetratricopeptide 99.4 6.7E-11 2.3E-15 125.4 25.8 311 58-423 9-350 (452)
51 2q7f_A YRRB protein; TPR, prot 99.4 1.6E-11 5.6E-16 118.6 19.2 206 50-262 21-226 (243)
52 3u4t_A TPR repeat-containing p 99.4 6.5E-11 2.2E-15 116.6 23.0 244 55-329 6-255 (272)
53 2h6f_A Protein farnesyltransfe 99.4 8.4E-11 2.9E-15 120.6 24.0 233 121-392 96-348 (382)
54 3sf4_A G-protein-signaling mod 99.4 1.6E-11 5.5E-16 129.0 19.1 277 53-356 10-335 (406)
55 3ro2_A PINS homolog, G-protein 99.3 2.7E-11 9.2E-16 123.4 19.1 278 53-357 6-332 (338)
56 2q7f_A YRRB protein; TPR, prot 99.3 3.4E-11 1.2E-15 116.3 18.7 165 87-255 23-187 (243)
57 4e6h_A MRNA 3'-END-processing 99.3 1.9E-08 6.6E-13 110.2 41.1 471 67-657 47-582 (679)
58 4a1s_A PINS, partner of inscut 99.3 3.1E-11 1.1E-15 127.1 18.0 242 53-321 49-331 (411)
59 1ouv_A Conserved hypothetical 99.3 1.5E-09 5E-14 106.9 27.6 221 89-358 8-252 (273)
60 1ouv_A Conserved hypothetical 99.3 1.7E-09 5.8E-14 106.4 27.9 226 121-423 5-250 (273)
61 4a1s_A PINS, partner of inscut 99.3 3.3E-11 1.1E-15 126.9 16.1 237 161-423 89-371 (411)
62 3sf4_A G-protein-signaling mod 99.3 2E-10 7E-15 120.4 21.7 278 85-389 7-333 (406)
63 3ro2_A PINS homolog, G-protein 99.3 1.6E-10 5.5E-15 117.6 19.5 275 89-390 7-330 (338)
64 4e6h_A MRNA 3'-END-processing 99.3 1.2E-07 4.3E-12 103.8 42.4 459 102-679 47-571 (679)
65 2ond_A Cleavage stimulation fa 99.2 1.7E-09 5.9E-14 108.4 25.2 220 69-322 33-270 (308)
66 2ond_A Cleavage stimulation fa 99.2 3.9E-09 1.3E-13 105.8 27.3 218 104-358 33-271 (308)
67 3vtx_A MAMA; tetratricopeptide 99.2 1.5E-09 5.1E-14 99.5 21.6 167 121-322 4-170 (184)
68 4abn_A Tetratricopeptide repea 99.2 2.7E-10 9.2E-15 121.6 18.4 214 67-318 83-317 (474)
69 3vtx_A MAMA; tetratricopeptide 99.2 1.1E-09 3.7E-14 100.5 19.7 170 86-261 4-173 (184)
70 3ulq_A Response regulator aspa 99.2 1E-09 3.5E-14 114.1 21.1 234 93-356 109-367 (383)
71 3ulq_A Response regulator aspa 99.2 8E-10 2.8E-14 114.9 19.5 230 168-423 113-367 (383)
72 4abn_A Tetratricopeptide repea 99.2 1E-09 3.6E-14 117.0 19.6 211 103-352 84-316 (474)
73 3nf1_A KLC 1, kinesin light ch 99.2 9.7E-11 3.3E-15 117.8 10.9 249 4-255 24-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.1 1.1E-09 3.9E-14 109.9 18.1 240 50-321 25-306 (311)
75 1hz4_A MALT regulatory protein 99.1 5.3E-08 1.8E-12 100.6 27.5 169 197-390 139-320 (373)
76 3q15_A PSP28, response regulat 99.1 9.4E-09 3.2E-13 106.5 21.1 305 18-356 23-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.1 7.9E-09 2.7E-13 94.5 18.2 163 52-219 8-170 (186)
78 3as5_A MAMA; tetratricopeptide 99.0 1.6E-08 5.3E-13 92.5 19.3 164 123-321 9-172 (186)
79 3q15_A PSP28, response regulat 99.0 5E-08 1.7E-12 101.0 24.8 202 195-423 143-364 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.0 1.1E-08 3.7E-13 113.6 20.2 166 121-321 8-173 (723)
81 1hz4_A MALT regulatory protein 99.0 8.1E-08 2.8E-12 99.3 25.6 268 128-423 20-321 (373)
82 3edt_B KLC 2, kinesin light ch 99.0 3.3E-09 1.1E-13 104.8 13.2 236 17-255 11-280 (283)
83 4gyw_A UDP-N-acetylglucosamine 98.9 1.7E-08 5.8E-13 112.0 18.4 165 87-255 9-173 (723)
84 3edt_B KLC 2, kinesin light ch 98.9 1.5E-08 5.1E-13 100.0 15.8 159 63-221 12-197 (283)
85 4i17_A Hypothetical protein; T 98.9 5.4E-08 1.9E-12 92.5 18.6 196 53-262 8-213 (228)
86 4i17_A Hypothetical protein; T 98.9 9.1E-08 3.1E-12 91.0 19.3 183 38-233 28-220 (228)
87 3mv2_B Coatomer subunit epsilo 98.9 3.6E-07 1.2E-11 88.5 22.2 182 71-262 85-286 (310)
88 1qqe_A Vesicular transport pro 98.8 3E-07 1E-11 91.1 21.1 104 228-357 118-228 (292)
89 2fo7_A Synthetic consensus TPR 98.8 2.7E-07 9.3E-12 78.9 16.7 129 124-255 3-131 (136)
90 3mv2_B Coatomer subunit epsilo 98.8 1.4E-06 4.7E-11 84.5 22.3 252 13-329 19-287 (310)
91 3qky_A Outer membrane assembly 98.8 2.5E-07 8.5E-12 90.0 17.5 187 53-262 16-228 (261)
92 3qky_A Outer membrane assembly 98.7 2.8E-07 9.6E-12 89.7 17.6 169 38-226 36-228 (261)
93 2fo7_A Synthetic consensus TPR 98.7 3.9E-07 1.3E-11 77.9 16.4 130 160-322 3-132 (136)
94 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.1E-06 3.7E-11 83.2 20.4 191 87-323 4-214 (225)
95 1qqe_A Vesicular transport pro 98.7 3.2E-07 1.1E-11 90.9 17.1 203 53-255 38-268 (292)
96 2pzi_A Probable serine/threoni 98.6 3.3E-07 1.1E-11 102.3 16.6 158 98-262 402-567 (681)
97 3qou_A Protein YBBN; thioredox 98.6 9.2E-07 3.2E-11 87.2 18.0 169 119-321 114-283 (287)
98 2uy1_A Cleavage stimulation fa 98.6 3.5E-05 1.2E-09 81.9 31.1 125 510-642 287-412 (493)
99 2pzi_A Probable serine/threoni 98.6 2.5E-07 8.5E-12 103.3 14.7 174 63-242 402-583 (681)
100 2r5s_A Uncharacterized protein 98.6 6.3E-07 2.2E-11 81.0 14.2 161 127-321 11-172 (176)
101 2uy1_A Cleavage stimulation fa 98.6 2.5E-05 8.6E-10 83.0 28.6 206 65-330 27-247 (493)
102 3urz_A Uncharacterized protein 98.6 8.2E-07 2.8E-11 82.8 15.3 162 55-222 7-186 (208)
103 2ifu_A Gamma-SNAP; membrane fu 98.6 9.4E-07 3.2E-11 88.2 16.2 204 65-320 4-222 (307)
104 4ga2_A E3 SUMO-protein ligase 98.6 4.5E-07 1.5E-11 79.4 12.0 143 96-242 6-149 (150)
105 3urz_A Uncharacterized protein 98.6 1.5E-06 5.1E-11 81.0 16.1 74 164-238 60-133 (208)
106 2r5s_A Uncharacterized protein 98.6 5.7E-07 1.9E-11 81.3 12.8 157 59-220 13-171 (176)
107 3u3w_A Transcriptional activat 98.6 9.1E-06 3.1E-10 80.4 22.5 212 75-321 34-265 (293)
108 4ga2_A E3 SUMO-protein ligase 98.5 5E-07 1.7E-11 79.1 11.5 130 128-262 3-133 (150)
109 2yhc_A BAMD, UPF0169 lipoprote 98.5 5.1E-06 1.7E-10 78.5 19.0 181 54-256 6-213 (225)
110 2ifu_A Gamma-SNAP; membrane fu 98.5 4.8E-06 1.6E-10 83.0 19.6 203 100-355 4-222 (307)
111 3qou_A Protein YBBN; thioredox 98.5 1.1E-06 3.9E-11 86.5 14.8 167 84-255 114-283 (287)
112 3dra_A Protein farnesyltransfe 98.5 3.1E-05 1.1E-09 75.8 24.7 152 207-391 124-286 (306)
113 3dra_A Protein farnesyltransfe 98.5 3.1E-05 1.1E-09 75.9 24.0 152 172-356 124-286 (306)
114 3rjv_A Putative SEL1 repeat pr 98.5 6.3E-06 2.2E-10 76.9 18.3 178 69-258 3-199 (212)
115 2vsy_A XCC0866; transferase, g 98.5 1.7E-06 5.9E-11 94.8 16.0 165 65-234 2-169 (568)
116 2vsy_A XCC0866; transferase, g 98.4 3.7E-06 1.3E-10 92.1 17.7 154 100-257 2-158 (568)
117 3rjv_A Putative SEL1 repeat pr 98.4 1.6E-05 5.5E-10 74.1 19.0 175 496-679 5-198 (212)
118 2qfc_A PLCR protein; TPR, HTH, 98.4 4.9E-05 1.7E-09 75.1 22.3 173 122-320 75-264 (293)
119 3u3w_A Transcriptional activat 98.3 4.9E-05 1.7E-09 75.1 21.2 163 514-676 80-264 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.3 1.9E-05 6.5E-10 73.7 17.3 143 161-323 9-151 (213)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.3 4.7E-05 1.6E-09 71.0 18.9 131 512-649 9-154 (213)
122 3q7a_A Farnesyltransferase alp 98.2 0.00023 7.8E-09 70.5 23.0 184 174-391 105-330 (349)
123 3gyz_A Chaperone protein IPGC; 98.2 9.8E-06 3.4E-10 70.4 11.5 95 160-255 38-132 (151)
124 2qfc_A PLCR protein; TPR, HTH, 98.2 8.1E-05 2.8E-09 73.4 19.5 166 55-220 78-264 (293)
125 1a17_A Serine/threonine protei 98.2 4.3E-05 1.5E-09 67.8 15.9 129 124-255 15-145 (166)
126 1na0_A Designed protein CTPR3; 98.2 3.3E-05 1.1E-09 64.4 14.4 110 124-236 11-120 (125)
127 1a17_A Serine/threonine protei 98.2 1.5E-05 5.2E-10 70.7 12.9 127 54-184 15-143 (166)
128 4gco_A Protein STI-1; structur 98.2 2.9E-05 9.9E-10 65.2 13.8 107 124-233 15-121 (126)
129 3gyz_A Chaperone protein IPGC; 98.2 1.6E-05 5.3E-10 69.2 12.1 109 40-151 25-133 (151)
130 1na0_A Designed protein CTPR3; 98.2 2.3E-05 7.9E-10 65.4 12.8 94 90-186 12-105 (125)
131 3q7a_A Farnesyltransferase alp 98.2 0.00041 1.4E-08 68.7 23.2 222 100-357 67-331 (349)
132 3dss_A Geranylgeranyl transfer 98.2 0.00074 2.5E-08 66.5 25.0 196 59-262 36-271 (331)
133 2c2l_A CHIP, carboxy terminus 98.2 3E-05 1E-09 76.0 15.2 96 159-255 5-100 (281)
134 4gco_A Protein STI-1; structur 98.2 3.7E-05 1.3E-09 64.5 13.6 101 159-262 14-114 (126)
135 3gw4_A Uncharacterized protein 98.1 3.8E-05 1.3E-09 70.9 14.7 136 160-321 28-175 (203)
136 2c2l_A CHIP, carboxy terminus 98.1 1.5E-05 5.1E-10 78.2 12.2 192 54-255 6-198 (281)
137 2e2e_A Formate-dependent nitri 98.1 2.1E-05 7.1E-10 70.9 12.3 123 62-188 20-145 (177)
138 2lni_A Stress-induced-phosphop 98.1 4.3E-05 1.5E-09 64.7 13.7 96 88-186 17-112 (133)
139 2vyi_A SGTA protein; chaperone 98.1 3.6E-05 1.2E-09 64.8 13.1 118 122-242 12-129 (131)
140 2e2e_A Formate-dependent nitri 98.1 2.1E-05 7.3E-10 70.8 12.2 119 171-322 23-144 (177)
141 2vgx_A Chaperone SYCD; alterna 98.1 3E-05 1E-09 67.4 12.5 111 39-152 9-119 (148)
142 3gw4_A Uncharacterized protein 98.1 2.9E-05 9.8E-10 71.7 13.2 125 206-356 5-135 (203)
143 2lni_A Stress-induced-phosphop 98.1 5.7E-05 1.9E-09 63.9 13.7 98 121-255 15-112 (133)
144 2vgx_A Chaperone SYCD; alterna 98.1 2.9E-05 9.9E-10 67.5 11.6 97 122-221 21-117 (148)
145 2vyi_A SGTA protein; chaperone 98.1 5.1E-05 1.8E-09 63.9 12.9 103 157-262 11-113 (131)
146 2xcb_A PCRH, regulatory protei 98.1 4.1E-05 1.4E-09 66.0 12.3 109 40-151 7-115 (142)
147 4f3v_A ESX-1 secretion system 98.0 6.2E-05 2.1E-09 71.9 13.8 189 64-261 18-240 (282)
148 1p5q_A FKBP52, FK506-binding p 98.0 6.4E-05 2.2E-09 75.7 14.7 113 121-255 146-258 (336)
149 1p5q_A FKBP52, FK506-binding p 98.0 0.0001 3.5E-09 74.3 15.6 120 65-187 126-259 (336)
150 4f3v_A ESX-1 secretion system 98.0 7.8E-05 2.7E-09 71.2 13.2 189 99-322 18-237 (282)
151 2fbn_A 70 kDa peptidylprolyl i 97.9 1.6E-05 5.4E-10 73.3 7.7 62 194-255 89-150 (198)
152 2fbn_A 70 kDa peptidylprolyl i 97.9 2.2E-05 7.4E-10 72.4 8.6 154 100-255 17-185 (198)
153 1elw_A TPR1-domain of HOP; HOP 97.9 0.0003 1E-08 57.7 14.7 104 124-230 6-109 (118)
154 2kck_A TPR repeat; tetratricop 97.9 0.00017 5.7E-09 58.6 12.8 102 86-188 5-107 (112)
155 3upv_A Heat shock protein STI1 97.9 0.00019 6.6E-09 60.1 13.4 94 90-186 7-100 (126)
156 2kck_A TPR repeat; tetratricop 97.9 0.00017 5.9E-09 58.6 12.5 96 159-255 7-105 (112)
157 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00012 4.2E-09 64.8 12.1 99 52-152 11-109 (164)
158 2xcb_A PCRH, regulatory protei 97.9 0.00015 5E-09 62.4 12.1 93 91-186 22-114 (142)
159 3dss_A Geranylgeranyl transfer 97.9 0.0063 2.1E-07 59.9 25.0 219 100-357 42-304 (331)
160 3upv_A Heat shock protein STI1 97.9 0.00023 7.8E-09 59.6 12.9 56 200-255 11-66 (126)
161 4gcn_A Protein STI-1; structur 97.8 0.00024 8.2E-09 59.6 12.8 110 194-330 9-118 (127)
162 4b4t_Q 26S proteasome regulato 97.8 0.0007 2.4E-08 71.0 19.4 198 58-255 10-244 (434)
163 1elw_A TPR1-domain of HOP; HOP 97.8 0.00067 2.3E-08 55.5 15.3 93 547-641 7-99 (118)
164 4b4t_Q 26S proteasome regulato 97.8 0.00054 1.9E-08 71.9 17.7 200 130-355 12-243 (434)
165 3ro3_A PINS homolog, G-protein 97.8 0.00019 6.6E-09 63.0 11.8 143 123-321 10-157 (164)
166 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00021 7.3E-09 63.2 11.8 98 121-221 10-107 (164)
167 2dba_A Smooth muscle cell asso 97.8 0.00081 2.8E-08 57.9 15.2 96 87-186 28-127 (148)
168 1hxi_A PEX5, peroxisome target 97.8 0.00011 3.7E-09 61.2 9.0 95 54-150 19-113 (121)
169 2dba_A Smooth muscle cell asso 97.7 0.00074 2.5E-08 58.1 14.8 96 121-220 27-126 (148)
170 3q49_B STIP1 homology and U bo 97.7 0.00047 1.6E-08 58.6 13.3 62 194-255 10-71 (137)
171 3q49_B STIP1 homology and U bo 97.7 0.00044 1.5E-08 58.8 13.0 97 158-255 9-105 (137)
172 4gcn_A Protein STI-1; structur 97.7 0.00043 1.5E-08 58.0 12.2 96 90-186 11-111 (127)
173 1hxi_A PEX5, peroxisome target 97.7 0.00025 8.6E-09 58.9 10.6 94 161-255 20-113 (121)
174 3k9i_A BH0479 protein; putativ 97.7 5.6E-05 1.9E-09 62.5 6.6 86 65-151 3-90 (117)
175 1elr_A TPR2A-domain of HOP; HO 97.7 0.00034 1.2E-08 58.7 11.5 113 194-333 5-117 (131)
176 1elr_A TPR2A-domain of HOP; HO 97.7 0.00039 1.3E-08 58.3 11.7 91 551-642 11-107 (131)
177 3ro3_A PINS homolog, G-protein 97.6 0.00053 1.8E-08 60.0 11.7 140 87-255 9-157 (164)
178 2xev_A YBGF; tetratricopeptide 97.6 0.0017 5.9E-08 54.2 14.3 92 94-186 9-104 (129)
179 2xev_A YBGF; tetratricopeptide 97.5 0.0013 4.4E-08 55.1 12.8 57 128-186 8-67 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0011 3.8E-08 69.8 14.2 150 103-254 250-413 (457)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0008 2.7E-08 70.9 12.7 132 158-321 268-414 (457)
182 1wao_1 Serine/threonine protei 97.4 0.00014 4.9E-09 77.0 6.8 125 161-318 9-135 (477)
183 1wao_1 Serine/threonine protei 97.4 0.00042 1.4E-08 73.4 9.9 89 95-186 14-102 (477)
184 1ihg_A Cyclophilin 40; ppiase 97.3 0.0019 6.6E-08 65.6 13.2 125 123-248 224-362 (370)
185 3k9i_A BH0479 protein; putativ 97.3 0.00057 1.9E-08 56.3 7.3 84 172-255 4-89 (117)
186 3rkv_A Putative peptidylprolyl 97.3 0.0025 8.6E-08 56.0 12.1 28 159-186 12-39 (162)
187 3rkv_A Putative peptidylprolyl 97.3 0.0017 5.8E-08 57.1 10.9 121 121-262 10-130 (162)
188 2hr2_A Hypothetical protein; a 97.2 0.0021 7.1E-08 55.2 10.4 66 195-262 59-135 (159)
189 1klx_A Cysteine rich protein B 97.2 0.0043 1.5E-07 52.7 12.6 111 523-644 9-127 (138)
190 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00086 2.9E-08 67.5 9.2 150 121-322 178-328 (338)
191 2hr2_A Hypothetical protein; a 97.2 0.0049 1.7E-07 52.8 12.4 63 227-321 57-130 (159)
192 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0012 4.2E-08 66.3 10.1 148 87-255 179-327 (338)
193 1ihg_A Cyclophilin 40; ppiase 97.2 0.0023 7.9E-08 65.1 12.2 122 160-313 225-361 (370)
194 3n71_A Histone lysine methyltr 97.1 0.0024 8.2E-08 67.1 12.0 131 554-684 319-470 (490)
195 1dce_A Protein (RAB geranylger 97.1 0.021 7.1E-07 61.6 19.5 120 138-262 89-225 (567)
196 3n71_A Histone lysine methyltr 97.1 0.00099 3.4E-08 70.0 8.8 98 14-114 316-420 (490)
197 2l6j_A TPR repeat-containing p 97.1 0.00053 1.8E-08 55.6 5.3 92 578-672 3-101 (111)
198 1dce_A Protein (RAB geranylger 97.1 0.016 5.5E-07 62.4 18.2 181 59-244 35-243 (567)
199 2kat_A Uncharacterized protein 97.1 0.0016 5.5E-08 53.2 8.2 78 70-149 3-80 (115)
200 2l6j_A TPR repeat-containing p 96.9 0.0017 5.7E-08 52.5 6.5 65 121-187 3-67 (111)
201 1klx_A Cysteine rich protein B 96.9 0.014 4.8E-07 49.4 12.5 112 557-679 8-127 (138)
202 1zu2_A Mitochondrial import re 96.9 0.0029 1E-07 54.1 7.8 113 205-357 14-147 (158)
203 2kat_A Uncharacterized protein 96.8 0.0067 2.3E-07 49.4 9.7 78 212-321 4-81 (115)
204 3lvg_A Clathrin heavy chain 1; 96.7 1.7E-06 5.8E-11 86.3 -15.0 206 11-249 15-221 (624)
205 1na3_A Designed protein CTPR2; 96.6 0.0093 3.2E-07 45.8 8.7 78 89-169 11-88 (91)
206 1na3_A Designed protein CTPR2; 96.6 0.012 4.2E-07 45.1 9.4 64 122-187 9-72 (91)
207 3ma5_A Tetratricopeptide repea 96.5 0.006 2.1E-07 48.2 7.1 60 123-184 8-67 (100)
208 1zu2_A Mitochondrial import re 96.5 0.012 4.3E-07 50.2 9.0 88 172-262 16-124 (158)
209 1wy6_A Hypothetical protein ST 96.5 0.24 8.2E-06 40.1 15.4 138 100-259 20-157 (172)
210 3ly7_A Transcriptional activat 96.1 0.51 1.7E-05 46.6 19.5 141 506-652 191-346 (372)
211 3ma5_A Tetratricopeptide repea 96.1 0.026 8.7E-07 44.5 8.4 61 195-255 9-69 (100)
212 3mkq_A Coatomer beta'-subunit; 95.8 0.31 1.1E-05 55.4 19.5 100 487-604 662-761 (814)
213 3lvg_A Clathrin heavy chain 1; 95.8 1.1E-05 3.9E-10 80.4 -15.0 79 581-671 456-534 (624)
214 3ly7_A Transcriptional activat 95.8 0.15 5E-06 50.4 13.9 144 189-366 190-346 (372)
215 3qww_A SET and MYND domain-con 95.3 0.11 3.9E-06 53.4 11.7 85 557-641 311-409 (433)
216 2kc7_A BFR218_protein; tetratr 95.1 0.073 2.5E-06 41.5 7.7 57 129-187 7-64 (99)
217 3qwp_A SET and MYND domain-con 94.9 0.14 4.8E-06 52.8 11.4 88 554-641 297-398 (429)
218 3qww_A SET and MYND domain-con 94.9 0.078 2.7E-06 54.6 9.1 86 136-221 312-410 (433)
219 3qwp_A SET and MYND domain-con 94.7 0.078 2.7E-06 54.7 8.5 92 95-186 295-399 (429)
220 3bee_A Putative YFRE protein; 94.5 0.31 1.1E-05 37.4 9.7 66 85-151 4-72 (93)
221 3bee_A Putative YFRE protein; 94.5 0.4 1.4E-05 36.8 10.2 64 578-642 5-71 (93)
222 1pc2_A Mitochondria fission pr 94.4 0.46 1.6E-05 40.1 11.1 85 561-649 15-104 (152)
223 3mkq_A Coatomer beta'-subunit; 94.3 0.57 1.9E-05 53.3 15.7 153 487-675 609-762 (814)
224 4b4t_P 26S proteasome regulato 94.3 4.8 0.00016 41.5 21.0 168 198-391 142-323 (445)
225 3u64_A Protein TP_0956; tetrat 94.2 3 0.0001 39.5 17.1 85 210-325 180-272 (301)
226 1wy6_A Hypothetical protein ST 94.1 2 6.7E-05 34.9 15.0 65 616-681 93-157 (172)
227 2kc7_A BFR218_protein; tetratr 94.0 0.18 6.1E-06 39.1 7.7 53 203-255 10-63 (99)
228 1pc2_A Mitochondria fission pr 94.0 0.36 1.2E-05 40.7 9.6 64 192-255 31-99 (152)
229 3mkq_B Coatomer subunit alpha; 93.6 1.6 5.3E-05 37.9 13.0 46 133-185 16-61 (177)
230 2v5f_A Prolyl 4-hydroxylase su 93.3 0.84 2.9E-05 35.8 10.5 71 578-650 4-80 (104)
231 3mkq_B Coatomer subunit alpha; 93.2 3.9 0.00013 35.4 16.2 101 486-604 14-114 (177)
232 2v5f_A Prolyl 4-hydroxylase su 93.1 0.71 2.4E-05 36.3 9.8 66 121-186 4-74 (104)
233 3u64_A Protein TP_0956; tetrat 92.4 1.5 5.1E-05 41.5 12.1 61 581-643 201-269 (301)
234 4b4t_P 26S proteasome regulato 91.9 13 0.00044 38.3 20.5 51 171-221 29-84 (445)
235 4h7y_A Dual specificity protei 91.8 2 6.9E-05 35.8 10.6 102 506-609 10-124 (161)
236 1nzn_A CGI-135 protein, fissio 91.4 2.1 7.2E-05 34.6 10.3 83 593-677 15-102 (126)
237 4gns_B Protein CSD3, chitin bi 90.9 13 0.00043 40.9 19.2 54 201-254 345-398 (754)
238 4h7y_A Dual specificity protei 90.3 2.2 7.6E-05 35.5 9.5 103 543-647 12-127 (161)
239 1nzn_A CGI-135 protein, fissio 89.4 2.3 7.8E-05 34.4 8.9 84 67-151 16-103 (126)
240 1v54_E Cytochrome C oxidase po 89.1 3.9 0.00013 31.2 9.1 59 597-656 28-86 (109)
241 4gns_B Protein CSD3, chitin bi 88.4 2.8 9.6E-05 46.0 11.7 125 164-320 254-398 (754)
242 4ady_A RPN2, 26S proteasome re 87.8 40 0.0014 37.9 32.9 27 89-115 232-258 (963)
243 1v54_E Cytochrome C oxidase po 86.8 3.8 0.00013 31.2 7.9 61 173-233 25-85 (109)
244 3ffl_A Anaphase-promoting comp 85.1 3.4 0.00012 35.2 7.9 74 42-115 10-91 (167)
245 2y69_E Cytochrome C oxidase su 84.7 7.7 0.00026 31.4 9.1 59 598-657 72-130 (152)
246 2ff4_A Probable regulatory pro 83.0 4.2 0.00014 41.1 9.2 67 127-195 176-247 (388)
247 2ff4_A Probable regulatory pro 82.9 4.5 0.00015 40.8 9.5 68 583-651 175-247 (388)
248 2y69_E Cytochrome C oxidase su 80.2 12 0.00043 30.2 8.8 61 174-234 69-129 (152)
249 3o48_A Mitochondria fission 1 78.3 26 0.00088 28.5 10.7 64 611-676 37-105 (134)
250 1wdy_A 2-5A-dependent ribonucl 78.2 12 0.00042 35.2 10.6 82 59-146 9-93 (285)
251 4fhn_B Nucleoporin NUP120; pro 78.1 71 0.0024 37.5 18.7 144 482-630 817-987 (1139)
252 3lpz_A GET4 (YOR164C homolog); 76.2 58 0.002 31.5 21.1 115 366-500 38-159 (336)
253 1zbp_A Hypothetical protein VP 72.3 16 0.00054 34.0 8.7 53 203-255 7-59 (273)
254 2wpv_A GET4, UPF0363 protein Y 71.6 73 0.0025 30.5 21.7 168 368-571 38-215 (312)
255 3lpz_A GET4 (YOR164C homolog); 71.0 78 0.0027 30.6 22.1 171 476-677 34-215 (336)
256 1qsa_A Protein (soluble lytic 70.9 1.2E+02 0.004 32.6 24.7 327 295-641 9-346 (618)
257 4fhn_B Nucleoporin NUP120; pro 70.8 29 0.001 40.8 13.0 87 295-383 901-991 (1139)
258 2p58_C Putative type III secre 70.6 32 0.0011 26.2 8.2 78 524-609 22-99 (116)
259 3ffl_A Anaphase-promoting comp 69.9 31 0.0011 29.3 9.3 27 653-679 126-152 (167)
260 1wdy_A 2-5A-dependent ribonucl 68.4 57 0.0019 30.4 12.7 83 300-387 152-240 (285)
261 4b4t_R RPN7, 26S proteasome re 66.8 26 0.00091 35.7 10.2 97 511-607 133-236 (429)
262 4g8k_A 2-5A-dependent ribonucl 66.7 71 0.0024 30.9 13.3 57 297-362 26-86 (337)
263 2uwj_G Type III export protein 66.4 30 0.001 26.3 7.3 78 524-609 21-98 (115)
264 2wpv_A GET4, UPF0363 protein Y 65.4 98 0.0034 29.6 21.9 172 476-678 32-217 (312)
265 3o48_A Mitochondria fission 1 64.6 56 0.0019 26.5 10.6 74 575-650 36-112 (134)
266 2p58_C Putative type III secre 63.4 47 0.0016 25.3 8.9 80 100-188 20-99 (116)
267 3esl_A Checkpoint serine/threo 63.1 64 0.0022 28.4 10.2 56 593-648 93-149 (202)
268 4b4t_R RPN7, 26S proteasome re 62.9 37 0.0013 34.6 10.4 26 295-320 170-195 (429)
269 3eiq_C Programmed cell death p 62.3 53 0.0018 32.2 10.7 26 124-149 56-81 (358)
270 1y8m_A FIS1; mitochondria, unk 56.9 82 0.0028 26.0 13.1 66 611-677 36-105 (144)
271 1y8m_A FIS1; mitochondria, unk 56.3 84 0.0029 25.9 12.3 73 576-650 36-111 (144)
272 3esl_A Checkpoint serine/threo 55.0 86 0.0029 27.6 9.6 55 558-612 93-148 (202)
273 1k1a_A B-cell lymphoma 3-encod 54.5 42 0.0014 30.4 8.5 18 100-117 19-36 (241)
274 3eu9_A Huntingtin-interacting 52.3 45 0.0015 30.1 8.4 15 132-146 16-30 (240)
275 2qx5_A Nucleoporin NIC96; mRNA 51.2 2.6E+02 0.009 30.1 16.5 20 339-361 549-568 (661)
276 3kea_A K1L; tropism, ANK repea 51.2 1.4E+02 0.005 27.8 12.0 12 133-144 70-81 (285)
277 2qx5_A Nucleoporin NIC96; mRNA 50.5 2.7E+02 0.0092 30.0 19.1 84 588-675 452-564 (661)
278 1k1a_A B-cell lymphoma 3-encod 48.8 58 0.002 29.4 8.5 17 170-186 18-34 (241)
279 3eiq_C Programmed cell death p 48.8 2E+02 0.0069 28.1 14.9 210 48-261 50-287 (358)
280 2zu6_B Programmed cell death p 48.5 1.7E+02 0.0059 27.9 11.6 63 366-428 169-236 (307)
281 4g8k_A 2-5A-dependent ribonucl 46.5 2E+02 0.007 27.5 13.3 54 58-120 28-85 (337)
282 1n11_A Ankyrin; clathrin, BAND 45.9 1.2E+02 0.004 30.7 11.1 17 371-387 250-266 (437)
283 4b4t_S RPN3, 26S proteasome re 45.4 1.7E+02 0.0058 30.3 11.6 25 124-148 233-257 (523)
284 3hra_A Ankyrin repeat family p 44.9 70 0.0024 27.8 8.1 14 133-146 13-26 (201)
285 2uwj_G Type III export protein 44.7 1E+02 0.0035 23.5 9.3 60 484-547 46-105 (115)
286 2d2s_A Exocyst complex compone 43.4 1.1E+02 0.0037 27.9 9.0 32 224-255 88-119 (235)
287 3b7b_A Euchromatic histone-lys 43.3 73 0.0025 28.7 8.2 12 316-327 160-171 (237)
288 3kea_A K1L; tropism, ANK repea 40.7 1.8E+02 0.0061 27.2 10.7 6 170-175 40-45 (285)
289 3t8k_A Uncharacterized protein 39.9 1.4E+02 0.0049 25.7 9.1 104 232-363 40-149 (186)
290 3aji_A 26S proteasome non-ATPa 39.8 1.4E+02 0.0047 26.6 9.5 19 165-183 10-28 (231)
291 4ady_A RPN2, 26S proteasome re 39.2 4.7E+02 0.016 29.6 38.2 27 160-186 232-258 (963)
292 2wvi_A Mitotic checkpoint seri 39.0 1.8E+02 0.0061 24.7 9.9 41 633-673 79-120 (164)
293 2nsz_A Programmed cell death p 38.8 1.5E+02 0.0052 23.8 9.1 64 125-190 10-75 (129)
294 2ion_A PDCD4, programmed cell 38.3 1.2E+02 0.0041 25.3 7.8 65 124-190 11-77 (152)
295 1n11_A Ankyrin; clathrin, BAND 38.1 2.1E+02 0.0071 28.7 11.6 296 59-417 18-330 (437)
296 2d2s_A Exocyst complex compone 37.7 1.8E+02 0.0063 26.4 9.5 29 647-675 89-117 (235)
297 1qsa_A Protein (soluble lytic 37.1 4.1E+02 0.014 28.3 33.3 116 172-321 228-347 (618)
298 3t8k_A Uncharacterized protein 36.8 58 0.002 28.3 6.0 24 520-543 46-69 (186)
299 2nsz_A Programmed cell death p 36.5 1.4E+02 0.0047 24.1 7.7 26 295-320 9-34 (129)
300 4a1g_A Mitotic checkpoint seri 35.6 1.9E+02 0.0066 24.1 11.2 63 631-697 82-145 (152)
301 4aez_C MAD3, mitotic spindle c 35.3 89 0.003 28.1 6.7 43 631-673 131-174 (223)
302 4a1g_A Mitotic checkpoint seri 35.1 2E+02 0.0067 24.0 9.1 50 598-647 84-134 (152)
303 3eu9_A Huntingtin-interacting 33.5 79 0.0027 28.3 6.8 14 62-75 16-29 (240)
304 3d9h_A CDNA FLJ77766, highly s 32.5 2.1E+02 0.007 26.7 9.7 20 127-146 17-36 (285)
305 4b4t_S RPN3, 26S proteasome re 31.8 4.5E+02 0.015 27.2 12.8 71 46-116 225-299 (523)
306 4ets_A Ferric uptake regulatio 31.8 88 0.003 26.5 6.1 71 139-210 14-86 (162)
307 2fe3_A Peroxide operon regulat 30.8 1.4E+02 0.0049 24.5 7.1 63 604-667 12-74 (145)
308 2fu4_A Ferric uptake regulatio 29.9 1.4E+02 0.0048 21.4 6.3 60 605-665 8-68 (83)
309 2wvi_A Mitotic checkpoint seri 29.7 2.6E+02 0.0088 23.7 9.3 54 597-650 78-132 (164)
310 2ion_A PDCD4, programmed cell 29.6 1.2E+02 0.004 25.4 6.3 26 295-320 11-36 (152)
311 3txn_A 26S proteasome regulato 29.4 4.3E+02 0.015 26.2 21.7 91 58-148 105-207 (394)
312 2r9g_A AAA ATPase, central reg 29.1 2.9E+02 0.01 24.2 9.0 37 171-208 27-63 (204)
313 3ygs_P Procaspase 9; apoptosis 27.8 1.5E+02 0.0051 22.4 6.1 38 377-415 51-88 (97)
314 2xig_A Ferric uptake regulatio 27.5 1.6E+02 0.0054 24.4 6.9 64 603-667 16-79 (150)
315 3eyy_A Putative iron uptake re 27.1 1.4E+02 0.0048 24.6 6.4 63 603-667 8-70 (145)
316 2zu6_B Programmed cell death p 26.8 4.2E+02 0.014 25.2 12.6 67 294-364 167-238 (307)
317 1mzb_A Ferric uptake regulatio 26.3 1.6E+02 0.0055 23.8 6.6 63 604-667 8-71 (136)
318 2fu4_A Ferric uptake regulatio 26.0 1.8E+02 0.0062 20.8 7.6 58 535-593 8-66 (83)
319 2r9g_A AAA ATPase, central reg 25.9 3.4E+02 0.012 23.8 9.3 43 515-558 17-62 (204)
320 3aji_A 26S proteasome non-ATPa 25.9 3.4E+02 0.012 23.8 11.2 19 129-147 10-28 (231)
321 1mzb_A Ferric uptake regulatio 25.8 2.4E+02 0.0081 22.8 7.5 34 559-592 33-66 (136)
322 3ljn_A Hypothetical protein; a 25.6 3.1E+02 0.011 26.5 10.1 47 338-388 218-266 (364)
323 3bu8_A Telomeric repeat-bindin 25.4 2.7E+02 0.0093 24.7 7.7 69 103-174 88-163 (235)
324 2rfa_A Transient receptor pote 25.3 2.6E+02 0.0088 24.7 8.7 177 485-673 8-218 (232)
325 3txn_A 26S proteasome regulato 24.4 5.3E+02 0.018 25.6 27.9 90 325-423 253-342 (394)
326 2fe3_A Peroxide operon regulat 24.2 2E+02 0.007 23.6 6.9 61 317-378 11-71 (145)
327 3jxi_A Vanilloid receptor-rela 24.0 1.3E+02 0.0046 27.4 6.6 28 59-86 9-36 (260)
328 2w57_A Ferric uptake regulatio 23.9 2.7E+02 0.0092 23.0 7.6 34 596-629 34-67 (150)
329 2w57_A Ferric uptake regulatio 23.8 1.7E+02 0.0058 24.3 6.4 64 603-667 6-70 (150)
330 3bge_A Predicted ATPase; struc 23.5 3.6E+02 0.012 23.5 8.2 44 515-558 10-56 (201)
331 2b7e_A PRE-mRNA processing pro 23.4 89 0.003 21.1 3.4 34 309-342 2-36 (59)
332 3b7b_A Euchromatic histone-lys 22.9 1.9E+02 0.0066 25.7 7.3 111 303-422 118-234 (237)
333 2etb_A Transient receptor pote 22.9 1.5E+02 0.0051 27.0 6.6 27 59-85 6-32 (256)
334 1oai_A Nuclear RNA export fact 22.8 64 0.0022 21.8 2.8 25 135-159 33-57 (59)
335 1wgl_A TOLL-interacting protei 22.8 1.6E+02 0.0055 19.8 4.7 24 169-192 34-57 (59)
336 3hra_A Ankyrin repeat family p 22.7 1.5E+02 0.005 25.6 6.3 34 330-363 140-173 (201)
337 2ijq_A Hypothetical protein; s 21.7 2E+02 0.007 24.2 6.3 52 64-115 44-103 (161)
338 1zbp_A Hypothetical protein VP 21.6 4.9E+02 0.017 24.1 15.1 53 554-607 7-59 (273)
339 2rfa_A Transient receptor pote 21.4 3.7E+02 0.013 23.6 8.9 57 301-361 126-184 (232)
340 3eyy_A Putative iron uptake re 21.1 2.8E+02 0.0096 22.7 7.1 34 596-629 34-67 (145)
341 4fke_A Aminopeptidase N; zinc 20.5 9.4E+02 0.032 27.1 16.0 157 92-255 691-859 (909)
342 3ljn_A Hypothetical protein; a 20.5 3.9E+02 0.013 25.8 9.5 183 59-262 24-239 (364)
343 2keb_A DNA polymerase subunit 20.0 2.9E+02 0.0099 20.9 6.6 27 565-591 30-56 (101)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-37 Score=343.98 Aligned_cols=501 Identities=12% Similarity=-0.026 Sum_probs=297.1
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
..|....+...+..+. .++...|+.++..|.+.|+++.|..+|++|... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444444444444332 245667778888888888888888888877743 4666777778888888888888888
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++... .. ...++...++ ...+.
T Consensus 139 ~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~~~~~~----------~~~~~ 196 (597)
T 2xpi_A 139 LLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-----RK----DEKNANKLLM----------QDGGI 196 (597)
T ss_dssp HHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-----C--------------C----------CCSSC
T ss_pred HHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-----cc----cccccccccc----------ccccc
Confidence 8877643 2566777888888888888888888887742211 00 0000000000 00112
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
+.+..+|+.++.+|.+.|++++|.++|+++.+ ..|+.. ..|..+...+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~------------------------------~~~~~l~~~~ 244 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCY------------------------------EAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH------------------------------HHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCchhh------------------------------HHHHHHHHhh
Confidence 33444555555555555555555555555554 223220 2333333333
Q ss_pred HccCCHHHHHH--H-HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 304 GRTQNSGLAEQ--L-MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 304 ~~~~~~~~a~~--~-~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
...+..+.+.. + +..+...+..++..+|+.++..|.+.|++++|.++|+.+.+. .++..++..++.+|.+.|+++
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHH
Confidence 33222221111 1 333333333333344444455555555555555555555443 245555555555555555555
Q ss_pred HHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhH
Q 004269 381 LAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458 (764)
Q Consensus 381 ~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
+|..+|+++.... +..+|+.++.+|.+.|++++|..+|+++.+. .|
T Consensus 323 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------------------------------- 370 (597)
T 2xpi_A 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HP------------------------------- 370 (597)
T ss_dssp HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT-------------------------------
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Cc-------------------------------
Confidence 5555555554322 5556666666666666666666666666541 11
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 004269 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536 (764)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~ 536 (764)
.+..+++.++..|.+.|++++|.++|+++. .+.+..+|+.++.+|.+.|++++|+++|++|.
T Consensus 371 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 371 ----------------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp ----------------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 122333445555666666666666665531 23356678888888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 004269 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE----GIPH 612 (764)
Q Consensus 537 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p 612 (764)
+.+ +.+..++..+..+|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|
T Consensus 435 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 435 RLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 764 3467778888888888888888888888877653 336777888888888888888888888887664 5567
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 613 D--VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 613 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.++++++..
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 6 6788888888888888888888888877643 23667777777788888888888888877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-36 Score=338.88 Aligned_cols=497 Identities=11% Similarity=-0.053 Sum_probs=353.7
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
++...|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+.+.. ..++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHH
Confidence 34555566666666666666666666655422 34555555566666666666666666655543 23455555555
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCC
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
+.+|.+.|++++|.++|+++... +.. ...+.+.++. ..+..++
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~~~~~-----------~~~~~~~------------------ 199 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPF---RKD-----EKNANKLLMQ-----------DGGIKLE------------------ 199 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTT---C---------------CC-----------CSSCCHH------------------
T ss_pred HHHHHHHhhHHHHHHHHhccCCc---ccc-----cccccccccc-----------ccccchh------------------
Confidence 55555555555555555431110 000 0000000000 0011111
Q ss_pred CccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChh--HHHHH-HHHHH
Q 004269 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLR--NGMEV-LKIMQ 355 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~--~a~~~-~~~~~ 355 (764)
..+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..+...+...+... .+..+ +..+.
T Consensus 200 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 264 (597)
T 2xpi_A 200 -------------ASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264 (597)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHH
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccc
Confidence 2699999999999999999999999999864 554 44554544333222222 12222 56666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHH
Q 004269 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~ 433 (764)
..+..+...+|+.++..|.+.|++++|.++|+++...+ +..+|+.++.+|.+.|++++|+.+|+++.+ + |
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~------ 336 (597)
T 2xpi_A 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--P------ 336 (597)
T ss_dssp GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------
T ss_pred cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--c------
Confidence 66666667778888999999999999999999998743 889999999999999999999999999986 3 2
Q ss_pred HHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhh
Q 004269 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPT 511 (764)
Q Consensus 434 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~ 511 (764)
.+..+++.++..|.+.|++++|..+|+++ ..+.+..+
T Consensus 337 -----------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
T 2xpi_A 337 -----------------------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375 (597)
T ss_dssp -----------------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHH
Confidence 12334566777888899999999999875 23456789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 9999999999999999999999998753 3467899999999999999999999999999874 3578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCh
Q 004269 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPD--PSTCHFVFSGYVNCGFH 665 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~ 665 (764)
.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 999999999999998753 457899999999999999999999999999875 66888 67999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHH-HHhhhcchhhHHHHhhhhh
Q 004269 666 NSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRIL-QFCEDSNENLAFTAALLQL 729 (764)
Q Consensus 666 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~ 729 (764)
++|.++++++...+ |. ...........+...++.+.+...+ +.+..+++.......|.++
T Consensus 533 ~~A~~~~~~~~~~~--p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 533 DAAIDALNQGLLLS--TN--DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHS--SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999999886643 22 1222233344445556666555544 4455666666655555544
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.3e-29 Score=267.92 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=176.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCc
Q 004269 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475 (764)
Q Consensus 397 ~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (764)
.++.+|.+|++.|++++|+++|++|.+ |++||.+||+++|.+|++.+...+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------------------------
Confidence 477889999999999999999999999 9999999999999999876543111
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004269 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 555 (764)
.+.+..++|.++|++|...|+.||..||+++|.+|+
T Consensus 81 --------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 81 --------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp --------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred --------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 123446789999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004269 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 636 IIEQMHQNKVQPDPSTCHFVFSGYVNC 662 (764)
Q Consensus 636 ~~~~m~~~~~~p~~~~~~~ll~~~~~~ 662 (764)
++++|.+.|..|+..||+.++..|+..
T Consensus 197 ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 197 TLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999888764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.1e-28 Score=257.01 Aligned_cols=182 Identities=16% Similarity=0.243 Sum_probs=173.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCC---------hhHHHHHHHHHHHCCCCCCH
Q 004269 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC---------FKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~g~~p~~ 579 (764)
...++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 659 (764)
.+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhh
Q 004269 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 690 (764)
++.|++++|.+++++|+..+..|...++..+
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 9999999999999999999998887666433
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=6.6e-23 Score=215.17 Aligned_cols=376 Identities=10% Similarity=0.025 Sum_probs=216.4
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+.+.|++++|+..++.+.+..+. +...+..+...+...|++++|...++...+..+.+..+|..+..+|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 344455555555555554443211 2223333334444555555555555555555555555555555555566666666
Q ss_pred HHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004269 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 326 (764)
...|+++.+ ..|+. ..+|..+..++.+.|++++|.+.|+++.+. .|
T Consensus 87 ~~~~~~al~--~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 132 (388)
T 1w3b_A 87 IEHYRHALR--LKPDF------------------------------IDGYINLAAALVAAGDMEGAVQAYVSALQY--NP 132 (388)
T ss_dssp HHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHH--cCcch------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 666665554 33333 134555555555666666666666555543 23
Q ss_pred Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHH
Q 004269 327 SSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLA 403 (764)
Q Consensus 327 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~ 403 (764)
+.. .+..+...+...|++++|..+|+.+.+.... +..++..+...|.+.|++++|...|+++.... +...|..+..
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 332 2333444444555555555555555543322 23334444444444444444444444433221 2223333444
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHH
Q 004269 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483 (764)
Q Consensus 404 ~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (764)
.+...|++++|+..|++...
T Consensus 212 ~~~~~~~~~~A~~~~~~al~------------------------------------------------------------ 231 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALS------------------------------------------------------------ 231 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHH------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHh------------------------------------------------------------
Confidence 44444444444444443322
Q ss_pred HHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHH
Q 004269 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563 (764)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 563 (764)
..+.+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|
T Consensus 232 --------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 232 --------------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred --------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 012245567777777888888888888888887753 23456778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004269 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 643 (764)
...|+.+.+.. +.+..+|+.+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|...++++.+
T Consensus 291 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~- 367 (388)
T 1w3b_A 291 EDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR- 367 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 88888887753 456778888888888888888888888888753 234577888888888888888888888888885
Q ss_pred CCCCC-HHHHHHHHHHHHhcC
Q 004269 644 KVQPD-PSTCHFVFSGYVNCG 663 (764)
Q Consensus 644 ~~~p~-~~~~~~ll~~~~~~g 663 (764)
..|+ ...|..+-..+...|
T Consensus 368 -~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 368 -ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -TCTTCHHHHHHHHHHHHHTC
T ss_pred -hCCCCHHHHHhHHHHHHHcc
Confidence 4564 334444444544444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=6.8e-23 Score=215.09 Aligned_cols=285 Identities=10% Similarity=0.004 Sum_probs=137.4
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.|+++.|.+.+..+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+..+|.+.|++++|+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 3445555555555444432 2233344444444455555555555555443321 233444555555555555555555
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004269 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 258 (764)
..|+.+.+..+ .+..+|..+..++...|++++|.+.++.+.+..+.+...+..+...+...|++++|.+.|+++.+ .
T Consensus 88 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~ 164 (388)
T 1w3b_A 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--T 164 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h
Confidence 55555544311 12234555555555555555555555555544444445555555555556666666666666555 2
Q ss_pred cCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHH
Q 004269 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRA 337 (764)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 337 (764)
.|+. ..+|+.+...+...|++++|...|+++.+.+ |+ ...+..+...
T Consensus 165 ~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 165 QPNF------------------------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNV 212 (388)
T ss_dssp CTTC------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred CCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 3332 1355566666666666666666666665532 22 3344445555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHH
Q 004269 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~ 415 (764)
+...|++++|...++...+.... +..++..+...|.+.|++++|...|+.+.... +..+|..+...+.+.|++++|.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555543322 23334444444444444444444444443321 2233444444444444444444
Q ss_pred HHHHHHh
Q 004269 416 KIFAKMR 422 (764)
Q Consensus 416 ~l~~~m~ 422 (764)
..|+++.
T Consensus 292 ~~~~~al 298 (388)
T 1w3b_A 292 DCYNTAL 298 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-19 Score=198.61 Aligned_cols=340 Identities=11% Similarity=-0.074 Sum_probs=215.7
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+......+...|++++|+..|+++...+ |+...|..+..++...|+++.|.+.++++.+.+ +.+...|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3445566777889999999999999998876 688889999999999999999999999999875 5567789999999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|...|++++|...|+++.... +++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999987543 345555666666655555555555555444333322322222221111111112221
Q ss_pred HHHHHHHHHhc----------CCCCHhhHHHHHHHhh---ccCCHHHHHHHHHHHHH-----hhccCcchhccccccccc
Q 004269 212 VHEIWEDYIKH----------YSLSIFSLRKFVWSFT---RLRDLKSAYETLQHMVA-----LAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 212 a~~~~~~~~~~----------~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 273 (764)
...+...+... .+.+...+..+...+. +.|+++.|..+|+++.+ ....|+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------- 231 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK--------- 231 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH---------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc---------
Confidence 11111111110 1223445555555444 48999999999999987 322332200
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 353 (764)
.......+|..+...+...|++++|...|+++.+.. |+..++..+...+...|++++|...++.
T Consensus 232 --------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 232 --------------LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred --------------cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000012588889999999999999999999998864 4466777888888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMR 422 (764)
Q Consensus 354 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~ 422 (764)
+.+.... +...+..+...|...|++++|...|+...... +...|..+...+...|++++|+..|+++.
T Consensus 296 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 296 ALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp HHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876543 44556666666666666666666666655432 34445555555555555555555555543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.1e-19 Score=194.90 Aligned_cols=250 Identities=14% Similarity=0.037 Sum_probs=167.9
Q ss_pred cCCHHHHHHHHHHHhh-----C----------C-CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Q 004269 376 ALELDLAEALLDQISR-----C----------T-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439 (764)
Q Consensus 376 ~g~~~~a~~~~~~~~~-----~----------~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~ 439 (764)
.|++++|...|+++.. . + +..+|..+...+...|++++|...|+++.+ ..|+...+..
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~----- 275 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSYIY----- 275 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HCCCHHHHHH-----
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCccHHHHHH-----
Confidence 6777777777777665 2 1 345677778888888899999888888876 1233333333
Q ss_pred cCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHH
Q 004269 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLH 517 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~ 517 (764)
+...|...|++++|...+++. ..+.+...|..+..
T Consensus 276 -------------------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 276 -------------------------------------------MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp -------------------------------------------HHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 334455555555555555443 12234556777777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004269 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597 (764)
Q Consensus 518 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 597 (764)
.+...|++++|...|++..+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 7788888888888888877754 2355667777777778888888888887777653 2345667777788888888888
Q ss_pred HHHHHHHHHHCC-CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004269 598 ALNLLDLVSLEG-IPHD----VLLYNTILKKACE---KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 598 A~~~~~~m~~~~-~~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 669 (764)
|...++++.... -.++ ...|..+...+.. .|++++|...++++.+.. +.+...+..+..+|.+.|++++|.
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 888887776421 1111 3377777777777 788888888888877532 224556666667788888888888
Q ss_pred HHHHHHHH
Q 004269 670 EALQVLSM 677 (764)
Q Consensus 670 ~~~~~~~~ 677 (764)
+.+++...
T Consensus 470 ~~~~~a~~ 477 (514)
T 2gw1_A 470 TLFEESAD 477 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=7.5e-19 Score=188.31 Aligned_cols=337 Identities=10% Similarity=-0.050 Sum_probs=273.7
Q ss_pred cCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH
Q 004269 44 MGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK 123 (764)
Q Consensus 44 ~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 123 (764)
+...|+ ....+..+...+...|++++|+.+|+.+.... +.+...+..+..++...|+++.|...|+++.+.+ +.+..
T Consensus 19 ~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 95 (450)
T 2y4t_A 19 YFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTA 95 (450)
T ss_dssp ----CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH
Confidence 333444 34556677888999999999999999998765 5578889999999999999999999999999985 55688
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh---hhhHHH------------HHHHhccCCHHHHHHHHHHHhhcC
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL---PVYNSF------------LGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
.+..+...|.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|+..|+.+.+..
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999997532 2233 455555 444889999999999999998864
Q ss_pred CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccc
Q 004269 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 268 (764)
+ .+..++..+..++...|++++|.+.++.+.+..+.+..++..+..+|...|++++|...|+++.+ ..|+..
T Consensus 174 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~----- 245 (450)
T 2y4t_A 174 V-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHK----- 245 (450)
T ss_dssp T-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-----
T ss_pred C-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChH-----
Confidence 3 37788999999999999999999999999998888999999999999999999999999999987 455541
Q ss_pred cccccccccCCCccCCccccchhhhhhHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCC-----cccH
Q 004269 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDV------------IHACGRTQNSGLAEQLMLQMQSLGLQPS-----SHTY 331 (764)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~ 331 (764)
..+..+ ...+...|++++|+..|+++.+. .|+ ...+
T Consensus 246 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~ 298 (450)
T 2y4t_A 246 -------------------------RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSK 298 (450)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHH
Confidence 234333 88899999999999999999885 455 3467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHH-----
Q 004269 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAA----- 404 (764)
Q Consensus 332 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~----- 404 (764)
..+...+.+.|++++|...++.+.+.... +...+..+..+|...|++++|...|+...... +...+..+..+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 78888999999999999999999886533 67889999999999999999999999998763 44455555422
Q ss_pred -------HHhcC-----CHHHHHHHHHHH
Q 004269 405 -------CDTMD-----KPERAIKIFAKM 421 (764)
Q Consensus 405 -------~~~~~-----~~~~a~~l~~~m 421 (764)
|...| +.+++.+.|+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 33333 556777777763
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.3e-18 Score=191.01 Aligned_cols=333 Identities=9% Similarity=-0.087 Sum_probs=231.0
Q ss_pred hhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
....+......+...|++++|+..|+++.... +.++..+..+..++...|+++.|.+.++++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34556777888999999999999999999876 5677889999999999999999999999999875 557889999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc------CCCCChhhHHHHHHHHH
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR------MVGKNEVTYTELLKLAV 204 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~ 204 (764)
.|...|++++|...|+.+. . .|+ ..+..+..+...+....|...++.+... ...|+... +..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-L---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-c---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHH
Confidence 9999999999999997553 2 222 2233344555666778899999988654 12233333 33344
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc--------CCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL--------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
...+.+.+...+.......+........+...+... |++++|..+|+.+.+ ..|+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~~~----------- 238 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDDPL----------- 238 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH-----------
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--HCCCcchh-----------
Confidence 455555444433322222222233444444444433 478999999999887 34443100
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
......+|..+...+...|++++|...|++..+. .|+..++..+...+...|++++|...++.+.+
T Consensus 239 ------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 239 ------------RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 0000136777788889999999999999999885 46667777888888889999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.... +..++..+...|...|++++|...|+...... +...|..+...+...|++++|...|++..+
T Consensus 305 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 305 LNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6544 56677777778888888888888887776532 555677777777777777777777776654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=5.1e-19 Score=189.63 Aligned_cols=320 Identities=9% Similarity=-0.028 Sum_probs=259.7
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 148 (764)
..+...|..+.... +.+...+..+...+.+.|+++.|..+|+++.+.. +.+...+..+...|...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444455554443 4667788999999999999999999999999874 557889999999999999999999999999
Q ss_pred hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh----hhHHHH------------HHHHHhhcChhHH
Q 004269 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTEL------------LKLAVWQKNLSAV 212 (764)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a 212 (764)
.+.. +.+...+..+...|.+.|++++|...|+.+.+.. |+. .++..+ ...+...|++++|
T Consensus 87 l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 87 IQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7653 3456789999999999999999999999998853 433 455554 3348889999999
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
...++.+.+..+.+..++..+..+|.+.|++++|..+|+++.+. .|+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~------------------------------ 210 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDN------------------------------ 210 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSC------------------------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC------------------------------
Confidence 99999999988889999999999999999999999999999883 3433
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc-HHHH------------HHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGF------------IRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
..+|..+...|...|++++|+..|+++... .|+... +..+ ...+...|++++|..+|+.+.+...
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 258999999999999999999999999875 455443 3333 6788899999999999999998543
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHH
Q 004269 360 KPQ----DSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIR 430 (764)
Q Consensus 360 ~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~ 430 (764)
. + ...+..+...+.+.|++++|...++.+.... +..+|..+..+|...|++++|...|++..+ +.|+..
T Consensus 289 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~ 363 (450)
T 2y4t_A 289 S-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-HNENDQ 363 (450)
T ss_dssp S-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSSCH
T ss_pred c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCcchH
Confidence 3 2 3467888999999999999999999986532 677899999999999999999999999988 445543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=2.9e-18 Score=188.31 Aligned_cols=430 Identities=10% Similarity=-0.014 Sum_probs=259.3
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+.+.|+++.|.+.|+++.+.+ +.+...+..+...|...|++++|++.|+++.+.+ +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 4557778888889999999999999999875 5578899999999999999999999999987654 345678888999
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC---CCCHhhHHHHHHHhhccCCH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY---SLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 243 (764)
++...|++++|...|+.+.. .|+.. ...+..+...+....+...++.+.+.. .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999974432 22222 222334555666677888888886531 11111122233334444555
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc--------CCHHHHHHH
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT--------QNSGLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~ 315 (764)
+.+...+..... ..+.. ...+..+...+... |++++|..+
T Consensus 177 ~~~~~~~~~~~~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAY------------------------------ALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp HHHHHTSCCCCS--SCSSH------------------------------HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--cccHH------------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444333222111 00000 01222333222222 467788888
Q ss_pred HHHHHHCCCCCCc--------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004269 316 MLQMQSLGLQPSS--------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 316 ~~~m~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (764)
|+++.+. .|+. .++..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...|+
T Consensus 225 ~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 225 YHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888764 3332 134445555666777777777777776643 334555555555666666666666665
Q ss_pred HHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHH
Q 004269 388 QISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465 (764)
Q Consensus 388 ~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (764)
...... +..+|..+...+...|++++|...|++..+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------------ 338 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------------------------------ 338 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------------------------------
Confidence 554321 334455555555555555555555554433
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 004269 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545 (764)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 545 (764)
..+.+...|..+...+...|++++|...|+++.+.. +.+..
T Consensus 339 --------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 379 (537)
T 3fp2_A 339 --------------------------------------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPE 379 (537)
T ss_dssp --------------------------------------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTH
T ss_pred --------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 011233455566666677777777777777766653 23455
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCC
Q 004269 546 TYNIMIDCCSIIRCFKSASALVSMMVRDG-----FYPQTMTYTALIKILLDY----------GDFDEALNLLDLVSLEGI 610 (764)
Q Consensus 546 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~ 610 (764)
.+..+...+...|++++|...|+.+.+.. .......+..+...|.+. |++++|...++++.+..
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 66666777777777777777777766532 111122233444556666 77778888877776542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+.+...+..+...|.+.|++++|.+.+++..+
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566777777777778888888887777775
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.9e-16 Score=161.35 Aligned_cols=311 Identities=9% Similarity=-0.076 Sum_probs=243.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+..+...+...|++++|+..|+.+.... +.++..+..+..++...|+++.|...++++.+.. +.+...+..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 345566777899999999999999998876 4567788889999999999999999999999874 44678899999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC----ChhhhHHH------------HHHHhccCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYP----ILPVYNSF------------LGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
...|++++|...|++..+. .| +...+..+ ...+...|++++|...|+.+.+..+ .+..++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 9999999999999999753 23 33444444 5788899999999999999988643 367788
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|...|+...+ ..|+..........+
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHH----
Confidence 88999999999999999999999998888999999999999999999999999999987 444431100000000
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHHhcCChhHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-----TYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~ 351 (764)
.. ......+...+.+.|++++|...+++..+.. |+.. .+..+...+...|++++|...+
T Consensus 232 ------------~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 232 ------------KK--LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp ------------HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------HH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 00 0011133666888899999999999888753 4432 2344566778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004269 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 392 (764)
+...+.... +..++..+...|.+.|++++|...|+.....
T Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888876433 5667778888888888888888888887765
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=4.5e-13 Score=150.88 Aligned_cols=556 Identities=10% Similarity=0.033 Sum_probs=357.3
Q ss_pred HHHHHHHHhhCCcchHHHHHHhccccCCC--CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 56 QMQIVDALCRGERSRASHLLLNLGHAHHS--LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 56 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
...+.+|...|.+.+|++++++....+.+ -+...-+.++.+..+. +.....++.++..... ..-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence 34567788999999999999998854311 2334456666666665 5666667666665221 333667788
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
..|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+-+++...|++++|.
T Consensus 1061 ~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999987521 1122233332 668899999888854 25778889999999999999999
Q ss_pred HHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
+.|.+. .|...|..++..+.+.|++++|.+.|....+.. ++.
T Consensus 1126 dsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~------------------------------- 1167 (1630)
T 1xi4_A 1126 DSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES------------------------------- 1167 (1630)
T ss_pred HHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc-------------------------------
Confidence 998653 677888889999999999999999999877633 222
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
...+.++.+|++.++++....+ .+ .|+...|..+-..|...|++++|..+|... ..|..+...|
T Consensus 1168 ~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tL 1231 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 1231 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHH
Confidence 2344588888888888753333 22 346667777888888999999999999874 4788899999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhh
Q 004269 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 453 (764)
.+.|+++.|.+.+++.. +..+|..+-.+|...|++..|......+. .+...+..++..+.+.|.++++...++
T Consensus 1232 vkLge~q~AIEaarKA~---n~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1232 VHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHhCCHHHHHHHHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988774 77888888888888888888887665432 344455566666766666655544432
Q ss_pred hhhhHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh--cCcHHHHHHHHHhcCCCC-------ChhhHHHHHHHHHHcC
Q 004269 454 QVDSAKRINAIEMDMARNNIQH-SHISMKNLLKALGA--EGMIRELIQYFCDSKTPL-------GTPTYNTVLHSLVEAQ 523 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~ 523 (764)
. .. ++.+ ....|+.|...|++ -+++.++.+.|.....-| +...|.-++..|.+.|
T Consensus 1305 ~-------------aL--~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1305 A-------------AL--GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred H-------------Hh--ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 1 11 1222 22344455555554 456677777776543322 3457888888899999
Q ss_pred ChHHHHHH-------------HHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 524 ESHRAMEI-------------FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 524 ~~~~A~~l-------------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
+++.|... |++.... ..|...|-..+.-|. +....++.-+.......+. ++..+..+.
T Consensus 1370 e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD-----~~R~V~l~~ 1440 (1630)
T 1xi4_A 1370 EYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFS 1440 (1630)
T ss_pred cHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCC-----hHHHHHHHH
Confidence 99888732 2222211 335555555555554 2223333333333221122 244566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHCCCCCCHHHHHHHHH-
Q 004269 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI------------EFIIEQMHQNKVQPDPSTCHFVFS- 657 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a------------~~~~~~m~~~~~~p~~~~~~~ll~- 657 (764)
+.|.+.-+..+++.....+ +..+-..|...+....+++.- ..+..++.++ +..-+..+..
T Consensus 1441 ~~~~l~lik~yl~~vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ 1513 (1630)
T 1xi4_A 1441 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAY 1513 (1630)
T ss_pred HcCChHHhHHHHHHHHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHH
Confidence 7777777777776665322 223333333444444443321 1222222211 1222233333
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHHHHhhhcchhhHHHHhhhhhhhhhhcCC
Q 004269 658 GYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGF 737 (764)
Q Consensus 658 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~g~ 737 (764)
.|.+.|+|..|.+++++- + .+ ...+.....+++.+-..+++..+...+++-.++..|..+..++.|..
T Consensus 1514 ly~~n~~~~~ai~l~k~d---~------l~---~dAm~~a~~S~d~e~~e~ll~~F~~~~~~E~f~a~Ly~cy~l~~pd~ 1581 (1630)
T 1xi4_A 1514 LFKGNNRWKQSVELCKKD---S------LY---KDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDV 1581 (1630)
T ss_pred HHHhcCcHHHHHHHHHhc---c------CH---HHHHHHHHHcCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCchH
Confidence 556679999999988732 1 22 22345556678888888888888887888888888888877776644
Q ss_pred c
Q 004269 738 P 738 (764)
Q Consensus 738 ~ 738 (764)
.
T Consensus 1582 v 1582 (1630)
T 1xi4_A 1582 V 1582 (1630)
T ss_pred H
Confidence 3
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.76 E-value=1.2e-15 Score=157.54 Aligned_cols=305 Identities=8% Similarity=-0.037 Sum_probs=252.2
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
++..+..+...+...|+++.|...|+++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...|..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHH
Confidence 34567778888999999999999999999875 5578899999999999999999999999997653 33567899999
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCC--CChhhHHHH------------HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTEL------------LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
..+...|++++|...|+...+..+. .+...+..+ ...+...|++++|.+.++.+.+..+.+..++.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999999885320 133344443 46788999999999999999998889999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 311 (764)
.+..++...|++++|...++.+.+ ..|+. ..+|..+...+...|++++
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~------------------------------~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASK--LKSDN------------------------------TEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT--TCSCC------------------------------HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999987 34443 2588999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcc-cHH------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q 004269 312 AEQLMLQMQSLGLQPSSH-TYD------------GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS----TIATLSVECS 374 (764)
Q Consensus 312 a~~~~~~m~~~g~~p~~~-~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~ 374 (764)
|...|++..+.. |+.. .+. .+...+...|++++|...++.+.+.... +.. .+..+...|.
T Consensus 207 A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 207 SLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 999999998753 4432 222 2255688999999999999999986544 332 2445778999
Q ss_pred hcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCH
Q 004269 375 KALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429 (764)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~ 429 (764)
+.|++++|...++...... +..+|..+...|...|++++|...|++..+ ..|+.
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~p~~ 339 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-HNEND 339 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTC
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC
Confidence 9999999999999987643 667888999999999999999999999988 44553
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=3e-13 Score=152.34 Aligned_cols=556 Identities=8% Similarity=0.023 Sum_probs=314.3
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhh-hcc-----------ccCCchhhhh--------hhHHHHHHHHHhhCCc
Q 004269 9 RFQLIADSFCKSKFHKHERRNVANKLELSRT-LTT-----------TMGLNEESIS--------KATQMQIVDALCRGER 68 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~-~~~-----------~~~~~p~~~~--------~~~~~~i~~~~~~~~~ 68 (764)
..+.++..|...|.+.+|+ +++++....-+ |.. +....+.... .....+...+...|.+
T Consensus 987 eVs~~vKaf~~aglp~Eai-eLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELI-ELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHH-HHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 4566788899999999999 88777642210 000 0000000000 0001113334456777
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 148 (764)
++|..+|++.. ......+.++. ..++++.|.++.++. -++.+|..+..++.+.|++++|+..|.+.
T Consensus 1066 EEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 77777777742 11112233332 445677777766644 24567778888888888888888887643
Q ss_pred hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHh
Q 004269 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF 228 (764)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 228 (764)
.|...|..++..+.+.|++++|.+.|...++.. +++...+.+..+|++.++++....+. ..++..
T Consensus 1132 -------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI------~~~n~a 1196 (1630)
T 1xi4_A 1132 -------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI------NGPNNA 1196 (1630)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH------hCCCHH
Confidence 245577778888888888888888887766653 33333334777777777777544332 234555
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 308 (764)
.+..+...|...|++++|..+|.... .|..+..++.+.|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~----------------------------------------ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS----------------------------------------NFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh----------------------------------------HHHHHHHHHHHhCC
Confidence 66678888888888888888888752 78888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (764)
++.|.+.+++.. +..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.
T Consensus 1237 ~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888752 567888888888888888888776543 333566677888888888999999888877
Q ss_pred HhhCC--CCccHHHHHHHHHhc--CCHHHHHHHHHHHhccCCC------CHHHHHHHHHHhcCCCCchhhchhhhhhhhH
Q 004269 389 ISRCT--NPKPFSAFLAACDTM--DKPERAIKIFAKMRQKLRP------DIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458 (764)
Q Consensus 389 ~~~~~--~~~~~~~li~~~~~~--~~~~~a~~l~~~m~~~~~p------~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
..... +...|+-+...|++. ++..+++++|..-. ++.| +...|.-+.-.|.+.+.++.|....-.-...
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri-ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV-NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 76543 444566666666654 34555555555322 2222 2333444444444444444333111110001
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004269 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538 (764)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~ 538 (764)
..-+..+.+... -..+...|...+.-|.... ..++.-+.... . ...-++-.+..+.+.++..-+...+...+..
T Consensus 1385 a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~--P~~lndLl~~l-~-~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~ 1458 (1630)
T 1xi4_A 1385 AWKEGQFKDIIT--KVANVELYYRAIQFYLEFK--PLLLNDLLMVL-S-PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH 1458 (1630)
T ss_pred hhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC--hHHHHHHHHHh-h-hcCChHHHHHHHHHcCChHHhHHHHHHHHHh
Confidence 111111111111 1234555555555555332 11111110000 0 0001122333333444444444444444332
Q ss_pred CCCCCHHHHHHHHHHHHhhCChhHH------------HHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHH
Q 004269 539 GIPPNAATYNIMIDCCSIIRCFKSA------------SALVSMMVRDGFYPQTMTYTAL-IKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 539 g~~p~~~t~~~ll~~~~~~g~~~~a------------~~~~~~~~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 605 (764)
+.. ..=..+...+....+++.- ..+-.++.++ +..-+..+ ...|.+.|++..|.+++.+-
T Consensus 1459 n~~---~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1459 NNK---SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred cch---hhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhc
Confidence 211 1111222222222222211 1222222221 12222333 33455669999999998874
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004269 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 606 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
| .|.-.|....+.|+.+.+++++.-..+. -+..+|...+-.|...=+.+-++++
T Consensus 1532 ---~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1532 ---S------LYKDAMQYASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred ---c------CHHHHHHHHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHHH
Confidence 2 4556778889999999999999998865 3567788888888888888887764
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=9.6e-16 Score=156.39 Aligned_cols=284 Identities=8% Similarity=-0.053 Sum_probs=161.3
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 164 (764)
.+...+..+...+...|+++.|.++++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 344455555555555666666666666666553 3344445555556666666666666666665432 2234455666
Q ss_pred HHHHhccC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 165 LGACAKLH-SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 165 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
...+...| ++++|...|+........ +..+|..+...+...|++++|...++...+..+.+...+..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 66666666 666666666666554321 3455566666666666666666666666665555555666666666666666
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 323 (764)
++|...|+++.+ ..|+. ...|..+...+...|++++|...|++..+..
T Consensus 176 ~~A~~~~~~al~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 176 KLAERFFSQALS--IAPED------------------------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHT--TCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCC------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 666666666665 23332 1356666666666666666666666665421
Q ss_pred --------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--
Q 004269 324 --------LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-- 393 (764)
Q Consensus 324 --------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 393 (764)
...+..++..+...+...|++++|...++...+.... +...+..+...|.+.|++++|...|++.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 0122345555666666666666666666666654432 34455555555666666666666665554432
Q ss_pred CCccHHHHHHHH
Q 004269 394 NPKPFSAFLAAC 405 (764)
Q Consensus 394 ~~~~~~~li~~~ 405 (764)
+...+..+..++
T Consensus 303 ~~~~~~~l~~~~ 314 (330)
T 3hym_B 303 DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 333344444444
No 18
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=185.84 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=128.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKT---CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 585 (764)
..+||++|++|++.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q 004269 586 IKILLDYGD-FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD------PSTCHFVFSG 658 (764)
Q Consensus 586 i~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~ 658 (764)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 578999999999999999999999999877665 444444554 3466665 3444455667
Q ss_pred HHhcC
Q 004269 659 YVNCG 663 (764)
Q Consensus 659 ~~~~g 663 (764)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77666
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.5e-15 Score=153.30 Aligned_cols=297 Identities=8% Similarity=-0.091 Sum_probs=242.0
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+++|+.+.... +.+...+..++.++...|+++.|..+++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 344556777888999999999999998776 4556677778888888999999999999999874 45678899999999
Q ss_pred HccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 133 CKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 133 ~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
...| ++++|...|++..+.. +.+...|..+...+...|++++|...|+...+.... +..++..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 9999 9999999999987543 345668999999999999999999999999886433 45677778889999999999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|...++...+..+.+..++..+...+...|++++|...|+++.+.......... +...
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------~~~~- 235 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---------------------VDKW- 235 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---------------------TTTC-
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---------------------ccHH-
Confidence 999999999988889999999999999999999999999999874321110000 0000
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+..
T Consensus 236 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 312 (330)
T 3hym_B 236 -EPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGH 312 (330)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHH
Confidence 1588999999999999999999999998864 235678888899999999999999999999876543 5666777777
Q ss_pred HH-HhcCCH
Q 004269 372 EC-SKALEL 379 (764)
Q Consensus 372 ~~-~~~g~~ 379 (764)
++ ...|+.
T Consensus 313 ~~~~~~g~~ 321 (330)
T 3hym_B 313 CIEMYIGDS 321 (330)
T ss_dssp HHHTTTTC-
T ss_pred HHHHHhCch
Confidence 66 344544
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=2e-13 Score=147.35 Aligned_cols=337 Identities=8% Similarity=-0.034 Sum_probs=179.0
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc----cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
.+++++|...|+...+. .+..++..|...|.. .++.++|.+.|++..+.| +.
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~------------------- 111 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP------------------- 111 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH-------------------
Confidence 44555555555544432 234444455555555 556666666666655422 11
Q ss_pred cCCccccchhhhhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHH
Q 004269 282 PLNALPVMKVLRWSFSDVIHACGR----TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKI 353 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 353 (764)
..+..|...|.. .+++++|+..|++..+.| +...+..+-..+.. .+++++|...|+.
T Consensus 112 ------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 112 ------------QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp ------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 244445555555 556666666666665543 33344444444444 4566666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh----cCCHHHHHHHHHHHhc-c
Q 004269 354 MQQNNLKPQDSTIATLSVECSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ-K 424 (764)
Q Consensus 354 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~-~ 424 (764)
..+.| +...+..+...|.. .++.++|...|......++...+..+...|.. .+++++|...|++..+ +
T Consensus 177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65553 44455555555555 56666666666666555455555555555554 5566666666665544 2
Q ss_pred CCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCcHHHHHHHH
Q 004269 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYF 500 (764)
Q Consensus 425 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 500 (764)
. .. .+..+...|.. .++.++|...|
T Consensus 254 ~---~~------------------------------------------------a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 254 N---SI------------------------------------------------AQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp C---HH------------------------------------------------HHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred C---HH------------------------------------------------HHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 1 00 11112222222 45555555555
Q ss_pred HhcCCCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC---ChhHHHHHHHHHHH
Q 004269 501 CDSKTPLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---CFKSASALVSMMVR 572 (764)
Q Consensus 501 ~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~ 572 (764)
++.....+...+..+...|... ++.++|+..|++..+.| +...+..+-..|...| ++++|..+|+...+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 5543333444555555555554 56666666666666553 3334444444444433 55666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004269 573 DGFYPQTMTYTALIKILLD----YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 573 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
.| +...+..|...|.. .++.++|.++|++..+.| ++..+..|...|.. .++.++|...|++..+.+
T Consensus 360 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 360 KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 43 45555556666665 566666666666665543 34555555555555 566666666666666543
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=8.1e-18 Score=183.05 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVR---DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
.--..||+++|++|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457999999999999999999999988875 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004269 618 NTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 618 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
++||.++++.|+ .+.|.++|++|.+.|+.||..+|++++.++.+.+-++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 999999999998 4789999999999999999999999998777665333
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.2e-15 Score=158.31 Aligned_cols=258 Identities=7% Similarity=-0.133 Sum_probs=165.7
Q ss_pred HHhhCCcchHHH-HHHhccccCC---CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004269 62 ALCRGERSRASH-LLLNLGHAHH---SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+...|++++|+. .|++...... ..+...+..+...+...|+++.|...++++.+.. +.+...+..+...|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688899998 8887665432 1135667888888889999999999999999875 5577788899999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHH---------------HHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE---------------LLKL 202 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------ll~~ 202 (764)
+++|...|+++.+.. +.+..++..+...|...|++++|...|+.+....+.. ...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999887643 3466788889999999999999999999988764332 222211 1222
Q ss_pred HHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
+...|++++|...++.+.+..+. +..++..+..+|...|++++|...|+++.+ ..|+.
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~------------------ 250 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPND------------------ 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCC------------------
Confidence 33666666666666666654444 556666666666666666666666666655 23332
Q ss_pred ccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 251 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 251 ------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1356666666666666666666666665532 12334555555566666666666666665554
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=8.4e-16 Score=159.61 Aligned_cols=292 Identities=9% Similarity=-0.040 Sum_probs=225.1
Q ss_pred HHhhcccchhhhhccccccchhhhhccccCCchhh---hhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH
Q 004269 16 SFCKSKFHKHERRNVANKLELSRTLTTTMGLNEES---ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92 (764)
Q Consensus 16 ~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~---~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (764)
.+.-.|++++|. . ..|...+...|+. ....+..+...+...|++++|+..|+++.... +.+...+..
T Consensus 34 ~~~~~~~~~~a~-~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 103 (368)
T 1fch_A 34 AHPWLSDYDDLT-S--------ATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQY 103 (368)
T ss_dssp -------------C--------HHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred hhHHHHHHHHHH-h--------hhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345567777777 3 0333334444432 34556677888999999999999999999876 557778899
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH---------
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS--------- 163 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~--------- 163 (764)
+..++...|+++.|.+.++++.+.+ +.+..++..+...|...|++++|...|+++.+..+- +...+..
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA--YAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TGGGCC----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHhhhhc
Confidence 9999999999999999999999875 557889999999999999999999999999764322 2222221
Q ss_pred ------HHHHHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 164 ------FLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 164 ------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
.+..+...|++++|...|+.+.+..+.. +..++..+...+...|++++|...++.+.+..+.+..++..+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 260 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 2333448899999999999998864332 478889999999999999999999999999888889999999999
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHH
Q 004269 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 316 (764)
+...|++++|...|+++.+ ..|+. ..+|..+...|.+.|++++|...|
T Consensus 261 ~~~~g~~~~A~~~~~~al~--~~~~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALE--LQPGY------------------------------IRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999988 44543 258999999999999999999999
Q ss_pred HHHHHCCCCC----------CcccHHHHHHHHHhcCChhHHHHHHH
Q 004269 317 LQMQSLGLQP----------SSHTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 317 ~~m~~~g~~p----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
++..+..... ...+|..+..++...|+.++|..+++
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9987642111 14577788888888888888887765
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.2e-13 Score=150.80 Aligned_cols=163 Identities=9% Similarity=0.002 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK- 587 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~- 587 (764)
.|..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|++++|..+|+...+... .+...|.....
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHH
Confidence 3444444445555555555555555553 3332 2455555555556666666666666655321 11222211111
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCC
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPD--PSTCHFVFSGYVNCGF 664 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~ 664 (764)
.+...|+.++|..+|++..+.. +.++..|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 1224566666666666665431 2345666666666666667777777776666542 1221 2245555555566677
Q ss_pred hHHHHHHHHHHHH
Q 004269 665 HNSAMEALQVLSM 677 (764)
Q Consensus 665 ~~~a~~~~~~~~~ 677 (764)
.+.+..+.+++..
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=1.1e-12 Score=141.51 Aligned_cols=353 Identities=10% Similarity=0.001 Sum_probs=284.3
Q ss_pred CCCHhhHHHHHHHhhc----cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHH
Q 004269 224 SLSIFSLRKFVWSFTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (764)
..++.++..+...|.. .++++.|...|++..+.| +. ..+..|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~-------------------------------~a~~~L 81 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YT-------------------------------PAEYVL 81 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------------------HHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CH-------------------------------HHHHHH
Confidence 3455666666667766 889999999999998742 11 477788
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 300 IHACGR----TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 300 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
...|.. .+++++|+..|++..+.| +...+..|-..+.. .+++++|...|+...+.| +...+..|..
T Consensus 82 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~ 155 (490)
T 2xm6_A 82 GLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGD 155 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888888 899999999999998865 55666777777777 789999999999998876 5667778888
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh----cCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCC
Q 004269 372 ECSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNV 442 (764)
Q Consensus 372 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~ 442 (764)
.|.. .++.++|...|+...+.++...+..+...|.. .+++++|+..|++..+ + +.
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~------------- 219 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DE------------- 219 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CH-------------
Confidence 8887 78999999999998887788888888888887 8999999999988766 3 11
Q ss_pred CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004269 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYNTVLHS 518 (764)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 518 (764)
..+..+...|.. .++.++|...|++.....+...+..+...
T Consensus 220 -----------------------------------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 220 -----------------------------------LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp -----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 122233444443 67899999999886555667777778888
Q ss_pred HHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 519 LVE----AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589 (764)
Q Consensus 519 ~~~----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 589 (764)
|.. .++.++|+..|++..+.| +...+..+-..|... +++++|...|+...+.| +...+..+...|
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 887 899999999999998875 455666677777776 89999999999999875 456777788888
Q ss_pred HhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 004269 590 LDYG---DFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN- 661 (764)
Q Consensus 590 ~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 661 (764)
...| +.++|.++|++..+.| ++..+..|...|.. .++.++|.+.+++..+.| +...+..|-..|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence 8767 7899999999998764 67888889998988 899999999999999865 46677777778887
Q ss_pred ---cCChHHHHHHHHHHHHhh
Q 004269 662 ---CGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 662 ---~g~~~~a~~~~~~~~~~~ 679 (764)
.+++++|.+.+++....+
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 899999999999877655
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=2.1e-15 Score=152.34 Aligned_cols=289 Identities=10% Similarity=-0.006 Sum_probs=121.0
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.|+.++|.++++++ +++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 445667777777766 22246777777777777777777777542 34556777777777777777777
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004269 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 258 (764)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+.
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---- 149 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 149 (449)
T ss_dssp -----------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHTT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 766655553 3446667777777777777777666653 3566678888888888888888888888651
Q ss_pred cCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004269 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338 (764)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 338 (764)
.|..++.++.+.|++++|++.++++ .++.+|..++.+|
T Consensus 150 ------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC 187 (449)
T 1b89_A 150 ------------------------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 187 (449)
T ss_dssp ------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred ------------------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH
Confidence 7888888999999999999888887 2678888889999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhc--CCHHHH
Q 004269 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTM--DKPERA 414 (764)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~--~~~~~a 414 (764)
+..|+++.|...... +...+.-...++..|.+.|.+++|..+++...... ....|+-|--.|++. ++..+.
T Consensus 188 v~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~eh 262 (449)
T 1b89_A 188 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 262 (449)
T ss_dssp HHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999998888554443 22334445568888888899999888888876553 444566666666654 233344
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHH
Q 004269 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494 (764)
Q Consensus 415 ~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 494 (764)
+++|..- .-...++++|.. ...|..++..|.+.++++
T Consensus 263 l~~~~~~--------ini~k~~~~~~~-----------------------------------~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 263 LELFWSR--------VNIPKVLRAAEQ-----------------------------------AHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHSTT--------SCHHHHHHHHHT-----------------------------------TTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHH--------hcCcHHHHHHHH-----------------------------------HHHHHHHHHHHHhhchHH
Confidence 4433311 112334555533 334666777788888888
Q ss_pred HHHHHHHh
Q 004269 495 ELIQYFCD 502 (764)
Q Consensus 495 ~a~~~~~~ 502 (764)
.|...+-+
T Consensus 300 ~A~~tm~~ 307 (449)
T 1b89_A 300 NAIITMMN 307 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=2.4e-15 Score=155.98 Aligned_cols=266 Identities=9% Similarity=-0.090 Sum_probs=148.7
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+.+.|+++.|.++|+++.+.. +.+...|..+...|...|++++|+..|+++.+.. +.+..+|..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3445555555556666666666666666553 3345556666666666666666666666655432 223445666666
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCC---------ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGK---------NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVW 235 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~ 235 (764)
.|...|++++|+..|+.+.+..+.. ....+..+...+...|++++|.+.++.+.+..+. +..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 6666666666666666655532110 0112223345556666666666666666655444 5666666666
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
+|...|++++|...|+++.+ ..|+. ..+|+.+...|...|++++|+..
T Consensus 222 ~~~~~g~~~~A~~~~~~al~--~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT--VRPED------------------------------YSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666666665 33332 14666666666666666666666
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHH
Q 004269 316 MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-----------PQDSTIATLSVECSKALELDLAEA 384 (764)
Q Consensus 316 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~ 384 (764)
|++..+.. +.+..++..+..++...|++++|...|+.+.+.... .+..++..+..++...|+.+.+..
T Consensus 270 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 270 YTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 66666542 123455666666666666666666666666553211 124556677777777777777666
Q ss_pred HHHH
Q 004269 385 LLDQ 388 (764)
Q Consensus 385 ~~~~ 388 (764)
+...
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6544
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=8.9e-13 Score=143.86 Aligned_cols=398 Identities=8% Similarity=0.020 Sum_probs=244.9
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccC
Q 004269 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260 (764)
Q Consensus 181 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 260 (764)
|+...+..+ -+..+|..++. +...|+++.|..+|+.+.+.+|.+...|..++..+.+.|+++.|..+|+++.+ ..|
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~--~~p 77 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM--KVL 77 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--TCC
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCC
Confidence 344444322 26667888887 46778888888888888888888888888888888888888888888888877 334
Q ss_pred cchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH-HccCCHHHHHH----HHHHHHH-CCCCCCc-ccHHH
Q 004269 261 KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC-GRTQNSGLAEQ----LMLQMQS-LGLQPSS-HTYDG 333 (764)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~-~g~~p~~-~~~~~ 333 (764)
+. ..|...+... ...|+++.|.+ +|++... .|..|+. ..|..
T Consensus 78 ~~-------------------------------~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~ 126 (530)
T 2ooe_A 78 HI-------------------------------DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVD 126 (530)
T ss_dssp CH-------------------------------HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred Ch-------------------------------HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 33 3566665422 34566666554 6666554 3544443 34555
Q ss_pred HHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 004269 334 FIRAIVS---------DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404 (764)
Q Consensus 334 ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~ 404 (764)
.+..... .|+++.|..+|+...+.........+..........|. ..+ ..++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~----------------~~~l~- 188 (530)
T 2ooe_A 127 YINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLA----------------KKMIE- 188 (530)
T ss_dssp HHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHH----------------HHHHH-
T ss_pred HHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHH----------------HHHHH-
Confidence 5544433 56777788888777762111111222222111100010 001 11111
Q ss_pred HHhcCCHHHHHHHHHHHhc---c-------CCCCH--------HHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHH
Q 004269 405 CDTMDKPERAIKIFAKMRQ---K-------LRPDI--------RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466 (764)
Q Consensus 405 ~~~~~~~~~a~~l~~~m~~---~-------~~p~~--------~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (764)
.+.+++..|..++.++.. + +.|+. ..|...+.
T Consensus 189 -~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~----------------------------- 238 (530)
T 2ooe_A 189 -DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ----------------------------- 238 (530)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH-----------------------------
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH-----------------------------
Confidence 123456667766665331 1 23331 11111110
Q ss_pred HHHHCCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHH-------cCChH-------HHH
Q 004269 467 DMARNNIQH-SHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVE-------AQESH-------RAM 529 (764)
Q Consensus 467 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~-------~~~~~-------~A~ 529 (764)
.....+... +... ..+.+...|++. ..+.+...|......+.+ .|+.+ +|.
T Consensus 239 ~e~~~~~~~~~~~~------------~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 239 WEKSNPLRTEDQTL------------ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHCSSCCSCSHH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHcCCccCCcchh------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 000110000 0000 011223333221 013356678877777765 68877 899
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004269 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-T-MTYTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 530 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
.+|++..+.-.+-+...+..+...+.+.|++++|..+|+.+.+. .|+ . ..|..++..+.+.|++++|.++|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999886322335778888888999999999999999999985 454 3 5899999999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 608 EGIPHDVLLYNTILKK-ACEKGRIDVIEFIIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 608 ~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
.. +.+...|...... +...|+.++|..+|++.++. .| +...|..++..+.+.|+.++|..+|++....
T Consensus 385 ~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 385 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp CT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred cc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 42 2233333332222 34689999999999999863 45 4677888888899999999999999987654
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=2.4e-15 Score=155.89 Aligned_cols=265 Identities=10% Similarity=-0.074 Sum_probs=180.6
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...|.+.|++++|+..|+.+.+..+ .+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 34456677777778888888888888776543 34566777788888888888888888888776532 2566777777
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhH----------HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccc
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSL----------RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 270 (764)
..+...|++++|...++.+.+..+.+...+ ..+...+...|++++|...|+++.+ ..|+...
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~------ 212 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMID------ 212 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCC------
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccC------
Confidence 778888888888888887776433333333 3346777788888888888888877 3443100
Q ss_pred cccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 004269 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 350 (764)
..+|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...
T Consensus 213 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 213 ----------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1477777788888888888888888877653 22456777777778888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------------CCccHHHHHHHHHhcCCHHHHHH
Q 004269 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--------------NPKPFSAFLAACDTMDKPERAIK 416 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~ 416 (764)
|+.+.+.... +..++..+...|.+.|++++|...|++..... +...|..+..++...|+.+.+..
T Consensus 270 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 270 YTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8887776433 46677777788888888888888887765431 14567777778888888877776
Q ss_pred HHHH
Q 004269 417 IFAK 420 (764)
Q Consensus 417 l~~~ 420 (764)
+..+
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6554
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=6.4e-15 Score=148.90 Aligned_cols=281 Identities=12% Similarity=0.118 Sum_probs=133.0
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
+.|++++|.++++++. ++..|..+..++.+.|++++|.+.|.+ .+|...|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677999999999883 234888999999999999999999965 2577799999999999999999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
+++...+. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.++.|...|..+
T Consensus 83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88766542 3556789999999999999999988884 377789999999999999999999999976
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
..|..++.++.+.|++++|.+.+.++. +. .+|..++.+|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~-------------------------------~~Wk~v~~aC 187 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------ST-------------------------------RTWKEVCFAC 187 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CH-------------------------------HHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------Cc-------------------------------hhHHHHHHHH
Confidence 589999999999999999999999882 11 5999999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHH
Q 004269 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA--LELDL 381 (764)
Q Consensus 304 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~ 381 (764)
...|+++.|......+. +.|+. ...++..|.+.|.+++|..+++...... .-....++-|.-+|++- +++.+
T Consensus 188 v~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~e 261 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 261 (449)
T ss_dssp HHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999966555422 23333 5578889999999999999999988765 34567777777777765 44555
Q ss_pred HHHHHHHHhhCC-------CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 382 AEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 382 a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
..+.|..-...+ +...|..++..|...++++.|...
T Consensus 262 hl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 262 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 555544221111 678899999999999999988764
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=1.2e-14 Score=147.85 Aligned_cols=203 Identities=6% Similarity=-0.127 Sum_probs=128.7
Q ss_pred hhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004269 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
|......+......+...|++++|+.+|+++.... +.+...+..+..++...|+++.|.+.++++.+.. +.+...+..
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 17 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp GGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 33344455566777888888888888888887765 4466677777888888888888888888888764 446777888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH--------------HH-HHhccCCHHHHHHHHHHHhhcCCCCC
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF--------------LG-ACAKLHSMVHANLCLDLMDSRMVGKN 192 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~ 192 (764)
+...|...|++++|...|+++.+..+ .+...+..+ .. .+...|++++|...++.+.+.... +
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-D 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-C
Confidence 88888888888888888888765421 222233322 11 245556666666666665554322 4
Q ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..++..+...+...|++++|...++.+.+..+.+..++..+..++...|++++|...|+++.+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555556666666655555555555555555555555555555555555555554
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=2.3e-14 Score=145.84 Aligned_cols=265 Identities=6% Similarity=-0.129 Sum_probs=177.8
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+...|+++.|..+++++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHH
Confidence 44567777888888999999999999998874 4577788888999999999999999999987653 34566888889
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH--------------HH-HHHhhcChhHHHHHHHHHHhcCCCCHhhH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL--------------LK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
..+...|++++|...|+.+...... +...+..+ .. .+...|++++|.+.++.+.+..+.+..++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 9999999999999999998875322 22222222 11 25566677777777777766666666777
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHH
Q 004269 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 310 (764)
..+...|...|++++|...++++.+ ..|+. ..+|..+...+...|+++
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVE--LRPDD------------------------------AQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHcCCHH
Confidence 7777777777777777777777665 23332 136666677777777777
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCH
Q 004269 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP-----------QDSTIATLSVECSKALEL 379 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~ 379 (764)
+|...|++..+.. +.+..++..+...+...|++++|...++.+.+..... +..++..+..++.+.|+.
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 7777777766542 1234456666666666677777776666665543221 233444455555555555
Q ss_pred HHHHHHHH
Q 004269 380 DLAEALLD 387 (764)
Q Consensus 380 ~~a~~~~~ 387 (764)
++|..+++
T Consensus 303 ~~A~~~~~ 310 (327)
T 3cv0_A 303 DLVELTYA 310 (327)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55554443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=4.3e-14 Score=140.32 Aligned_cols=253 Identities=11% Similarity=0.011 Sum_probs=172.6
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHH
Q 004269 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI 93 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (764)
+......|+++.|+ ..++ ......|++.......+.+.|...|+++.|+..++.. .+|+..++..+
T Consensus 6 ~~~~~~~g~y~~ai-~~~~---------~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~l 71 (291)
T 3mkr_A 6 VKNAFYIGSYQQCI-NEAQ---------RVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMF 71 (291)
T ss_dssp HHHHHHTTCHHHHH-HHHH---------HSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHH---------hcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHH
Confidence 45566778888888 3332 2344556654444444567788888888888766442 24566677777
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004269 94 LNYCARSPDPLFVMETWRMMEEKEIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
...+...++.+.|.+.++++...+..| +...+..+...|...|++++|++.+++ +.+...+..+...|.+.|
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLD 144 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCC
Confidence 788888888888888888887766433 556666777788888888888888875 346667888888888888
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHH----HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNEVTYTEL----LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
++++|.+.|+.+.+.. |+.. ...+ +..+...|++++|..+|+++.+..+.+...++.+..++.+.|++++|..
T Consensus 145 ~~~~A~~~l~~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 145 RLDLARKELKKMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp CHHHHHHHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887753 4432 1222 2223344677777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL-AEQLMLQMQSL 322 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~ 322 (764)
.|+++.+ ..|+. ..++..++..+...|+.++ +.++++++.+.
T Consensus 222 ~l~~al~--~~p~~------------------------------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 222 VLQEALD--KDSGH------------------------------PETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7777776 44443 1466677777777777654 45677776653
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=5.5e-14 Score=139.56 Aligned_cols=256 Identities=7% Similarity=-0.051 Sum_probs=160.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
++.....|+++.|+..++................+.+++...|+++.|+..++. . -+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 566667788888888877765543111123445566777777887777765543 1 355666777777777777888
Q ss_pred HHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 139 EEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
++|++.++++... +..| +...+..+...+.+.|++++|++.|+. ..+..++..+...+.+.|++++|.+.++
T Consensus 82 ~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888777542 3223 444555666777777888888887776 3456667777777777777777777777
Q ss_pred HHHhcCCCCHhh--HHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 218 DYIKHYSLSIFS--LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 218 ~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
.+.+..+.+... ...++..+...|++++|..+|+++.+. .|+. ...
T Consensus 155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~------------------------------~~~ 202 (291)
T 3mkr_A 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPT------------------------------LLL 202 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCC------------------------------HHH
T ss_pred HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCc------------------------------HHH
Confidence 776653333211 122333444456777777777777663 3433 146
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHHCC
Q 004269 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQNN 358 (764)
Q Consensus 296 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 358 (764)
|+.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+..+ +.++++.+.+..
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 6777777777777777777777766542 1244566666666666666654 456666666543
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=3.1e-12 Score=137.55 Aligned_cols=126 Identities=9% Similarity=-0.087 Sum_probs=70.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhhCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA--TYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 583 (764)
.+...+..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++|...|.+..+. .|+.....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~ 409 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE 409 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 345577888888888999999999998888754332221 1222211 234568888888888888774 34433222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
. ..+.+.+++++..... +.++.+|..|...|...|++++|++.|++.++.+
T Consensus 410 ~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 K---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp H---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred H---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 2233445555554432 4466778888888888888888888888887643
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=9.3e-12 Score=133.84 Aligned_cols=288 Identities=9% Similarity=-0.088 Sum_probs=165.4
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHc-----C---ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---C
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEK-----E---IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---G 153 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~ 153 (764)
.....|+.+...+...|+.++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+.. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34456777777777788888888888776542 1 12234577777888888888888888877664311 0
Q ss_pred --CCC-ChhhhHHHHHHHhc--cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH---HhhcChhHHHHHHHHHHhcCCC
Q 004269 154 --IYP-ILPVYNSFLGACAK--LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA---VWQKNLSAVHEIWEDYIKHYSL 225 (764)
Q Consensus 154 --~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 225 (764)
..+ ...++..+..++.. .+++++|+..|+...+..+. +...+..+..++ ...++.++|.+.+++..+..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 111 12344444444443 34677888888777764322 233333333332 3345566777777777666666
Q ss_pred CHhhHHHHHHHhhcc----CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 226 SIFSLRKFVWSFTRL----RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 226 ~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
+..++..+...+... |+.++|.+.+++..+ ..|+. ..++..+..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~------------------------------~~~~~~lg~ 255 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGV------------------------------TDVLRSAAK 255 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSC------------------------------HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccH------------------------------HHHHHHHHH
Confidence 666666666555443 455667777777665 34433 146777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
.|...|++++|+..|++..+. .|+. .++..+...+...+. ....... ..........+..+
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~---------~~~~~~~-------~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVF---------QVMNLRE-------NGMYGKRKLLELIG 317 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHH---------HHHHC-------------CHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH---------HhhhHHH-------HHHHHHHHHHhhHH
Confidence 777777777777777777664 3443 333333333321110 0000000 00000111122356
Q ss_pred HHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 381 LAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 381 ~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.|...|+...... +..+|..+...|...|++++|+..|++..+
T Consensus 318 ~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 6777776665432 677788888888888888888888887765
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=1.4e-12 Score=128.76 Aligned_cols=247 Identities=11% Similarity=-0.107 Sum_probs=123.7
Q ss_pred CCCChhHHHHHHHHHHHcCc---cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 99 RSPDPLFVMETWRMMEEKEI---GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
..++++.|.+.++++.+... +.+...+..+...|...|++++|...|++..+.. +.+...|..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 44556666666666655421 1134455555666666666666666666554432 223445555555555555555
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+|...|+...+ ..+.+..++..+..+|...|++++|...|+++.+
T Consensus 95 ~A~~~~~~al~-----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 95 AAYEAFDSVLE-----------------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHH-----------------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----------------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555554 3333444444555555555555555555555554
Q ss_pred hhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 004269 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335 (764)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 335 (764)
..|+. ..+...+..+...|++++|...+++..... |+......+.
T Consensus 140 --~~~~~-------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 184 (275)
T 1xnf_A 140 --DDPND-------------------------------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNIV 184 (275)
T ss_dssp --HCTTC-------------------------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHHH
T ss_pred --hCCCC-------------------------------hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 23332 111222222334455566666665554431 2222222344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHH
Q 004269 336 RAIVSDRGLRNGMEVLKIMQQNNLKP---QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412 (764)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 412 (764)
..+...++.++|...+....+..... +..++..+...|.+.|++++|...|+..... ++..+.....++...|+++
T Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~l~~~~ 263 (275)
T 1xnf_A 185 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-NVHNFVEHRYALLELSLLG 263 (275)
T ss_dssp HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHH
Confidence 44445555555555555554432110 1344556666666666666666666666655 4444555555566666666
Q ss_pred HHHHHH
Q 004269 413 RAIKIF 418 (764)
Q Consensus 413 ~a~~l~ 418 (764)
+|+..+
T Consensus 264 ~a~~~~ 269 (275)
T 1xnf_A 264 QDQDDL 269 (275)
T ss_dssp HC----
T ss_pred hhHHHH
Confidence 665544
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=2.8e-12 Score=121.33 Aligned_cols=198 Identities=8% Similarity=-0.116 Sum_probs=129.1
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
+...+..+...+.+.|++++|+..|+...+..+. +...+..+...+...|++++|...++..++..|.+...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444555555555555555555555555543221 344455555555555555555555555555555555666666666
Q ss_pred hhcc-----------CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHc
Q 004269 237 FTRL-----------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305 (764)
Q Consensus 237 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 305 (764)
+... |++++|...|++..+ ..|+. ...|..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~------------------------------~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRY------------------------------APLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCccc------------------------------HHHHHHHHHHHHH
Confidence 6666 999999999999988 55654 2588889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004269 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (764)
.|++++|+..|++..+.. .+...+..+..++...|++++|...|+...+..+. +...+..+...+.+.|++++|...
T Consensus 131 ~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------
T ss_pred cCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999998876 57778888888999999999999999999887544 566677777888888888888887
Q ss_pred HHHHh
Q 004269 386 LDQIS 390 (764)
Q Consensus 386 ~~~~~ 390 (764)
|++..
T Consensus 208 ~~~~~ 212 (217)
T 2pl2_A 208 AALEH 212 (217)
T ss_dssp -----
T ss_pred HHHHh
Confidence 77654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=6.3e-12 Score=122.69 Aligned_cols=224 Identities=11% Similarity=-0.087 Sum_probs=116.1
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCC----hhhhHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI-YPI----LPVYNS 163 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~~ 163 (764)
.+..+...+...|+++.|.+++++..+.. .+...+..+...|...|++++|...|++..+..+- .++ ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555544 44445555555555555555555555554332100 001 234555
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+...+...|++++|...|+...+. .|+. ..+...|++++|...++.+.+..+.+...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 555555555555555555555543 2221 2234445555555555555554444555555666666666666
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 323 (764)
++|...|+++.+ ..|+. ...|..+...+...|++++|+..|++..+..
T Consensus 156 ~~A~~~~~~a~~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 156 PNAVKAYTEMIK--RAPED------------------------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh--cCccc------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 666666666555 22322 1355556666666666666666666665542
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 324 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
+.+..++..+...+...|++++|...++...+
T Consensus 204 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 204 -PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11244455555556666666666666655554
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8e-12 Score=121.96 Aligned_cols=226 Identities=8% Similarity=-0.089 Sum_probs=192.8
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcc--cc----HHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG--LN----NKCY 125 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~ 125 (764)
...+..+...+...|++++|+..|++..... .+...+..+..++...|+++.|.+.+++..+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666778899999999999999998877 77888999999999999999999999999886411 11 5788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 004269 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
..+...|...|++++|...|++..+. .|+ ...+.+.|++++|...++.+....+ .+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE---HRT-------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc---Cch-------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 99999999999999999999999764 344 2456677899999999999988532 255678888889999
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.|++++|...++...+..+.+..++..+..+|...|++++|...|+...+ ..|+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~----------------------- 206 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNF----------------------- 206 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHH-----------------------
Confidence 99999999999999998888999999999999999999999999999988 44543
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+|..+...+...|++++|...|++..+.
T Consensus 207 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 -------VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 258889999999999999999999998764
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=1.6e-11 Score=119.44 Aligned_cols=210 Identities=12% Similarity=0.034 Sum_probs=181.0
Q ss_pred chhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH
Q 004269 47 NEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL 126 (764)
Q Consensus 47 ~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (764)
.|+.....+..+...+...|++++|+..|+++.... +.+...+..+..++...|+++.|.+.++++.+.. +.+...+.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 455546667777888999999999999999998765 4567788889999999999999999999999875 45778899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
.+...|...|++++|.++|+++.+ .+..| +...+..+...+.+.|++++|...|+...+... .+..++..+...+..
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHH
Confidence 999999999999999999999975 22334 456788899999999999999999999988643 357788899999999
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.|++++|...++.+.+..+.+...+..+...+...|+.++|.+.++.+.+ ..|+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 242 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGS 242 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTS
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCC
Confidence 99999999999999998888899999999999999999999999999988 44544
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=4.3e-12 Score=120.09 Aligned_cols=196 Identities=11% Similarity=-0.010 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+..+...+...|++++|+..|+...+.. |.++..+..+..++.+.|++++|...+++..+.+ +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345556777889999999999999998876 5667788889999999999999999999999885 55778899999999
Q ss_pred Hcc-----------CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 004269 133 CKG-----------GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 133 ~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
... |++++|+..|++..+.. +.+...|..+..++...|++++|+..|+...+.. .+...+..+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 999 99999999999997653 3356688899999999999999999999999887 68889999999
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
++...|++++|...++...+..|.+..++..+..++...|++++|...|++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999889999999999999999999999999988764
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=6.1e-12 Score=124.24 Aligned_cols=250 Identities=9% Similarity=-0.144 Sum_probs=192.4
Q ss_pred hhCCcchHHHHHHhccccCC---CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004269 64 CRGERSRASHLLLNLGHAHH---SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
..|++++|+..|+.+..... +.+...+..+..++...|+++.|.+.|+++.+.+ +.+...|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45788999999999987632 2245678888999999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 141 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
|...|++..+.. +.+...+..+...|.+.|++++|...|+.+.+. .|+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999997643 345678999999999999999999999999885 4555555556666677899999999998888
Q ss_pred hcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHH
Q 004269 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
...+++...+. ++..+...++.+.|...+....+....... .....|..+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~~~~la 222 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE----------------------------HLSETNFYLG 222 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH----------------------------HHHHHHHHHH
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc----------------------------cccHHHHHHH
Confidence 87777766655 677777888889999998887653221100 0015788889
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 004269 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 351 (764)
..+...|++++|...|++.... .|+. +.....++...|++++|.+.+
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999875 3433 223344566677777776655
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.42 E-value=5.2e-11 Score=126.28 Aligned_cols=223 Identities=9% Similarity=-0.007 Sum_probs=135.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR---GLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
.+..|...|...+.++++........+.-...+...+..+-..+...| +.++|...|+...+.|.. +...+..|..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 566667777777755544444333322222234446777777777778 788888888888887754 4444455666
Q ss_pred HHHhc----CCHHHHHHHHHHHhhCCCCccHHHHHHH-H--HhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCC
Q 004269 372 ECSKA----LELDLAEALLDQISRCTNPKPFSAFLAA-C--DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 372 ~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~ 443 (764)
.|... ++.++|...|+... .+++..+..+-.. | ...+++++|+..|++..+ | +...
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A------------ 285 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA------------ 285 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH------------
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH------------
Confidence 66554 68888888888887 5477777777776 4 467888888888887765 4 1111
Q ss_pred CchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004269 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519 (764)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~ 519 (764)
+..|...|.. ..++++|...|++.. ..+...+..+...|
T Consensus 286 ------------------------------------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 286 ------------------------------------ELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY 328 (452)
T ss_dssp ------------------------------------HHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 1222233331 127777888777765 55556666666555
Q ss_pred HH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCC
Q 004269 520 VE----AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI----IRCFKSASALVSMMVRDG 574 (764)
Q Consensus 520 ~~----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g 574 (764)
.. ..+.++|...|++..+.|. |+ ....|-..|.. ..+.++|..+|+...+.|
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 54 2367777777777766653 22 22233333332 235666666666666655
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=4.6e-11 Score=113.74 Aligned_cols=205 Identities=12% Similarity=-0.046 Sum_probs=176.1
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|+.+.... +.+...+..+..++...|+++.|.++++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4556667788999999999999999998765 4567788889999999999999999999999875 4577889999999
Q ss_pred HHcc-CCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcCh
Q 004269 132 LCKG-GYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 132 ~~~~-g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
|... |++++|...|+++.+ .+..| +...+..+...+...|++++|...|+.+.+..+. +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 9999 999999999999976 32233 3567888999999999999999999999886432 577888899999999999
Q ss_pred hHHHHHHHHHHhcCC-CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 210 SAVHEIWEDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++|...++.+.+..+ .+...+..+...+...|+.+.|..+++.+.+ ..|+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~ 215 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCC
Confidence 999999999998777 8888899999999999999999999999886 44554
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=3.9e-11 Score=118.20 Aligned_cols=234 Identities=9% Similarity=-0.036 Sum_probs=115.2
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh--hhhHHHHHH
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL--PVYNSFLGA 167 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~li~~ 167 (764)
+......+...|+++.|...+++..+.. +.+...+..+...|...|++++|+..|++..+ .+..|+. ..|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 3344444555555555555555555442 22333455555555555555555555555543 1111111 124555555
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
+...|++++|+..|+...+..+. +..++..+...+...|++++|...++...+..+.+..++..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555543221 33455555555555555555555555555554455555555552222233666666
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC---HHHHHHHHHHHHHCC-
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN---SGLAEQLMLQMQSLG- 323 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g- 323 (764)
+.|+++.+ ..|+. ...|..+...+...++ +++|...|++..+..
T Consensus 163 ~~~~~a~~--~~p~~------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 163 SSFVKVLE--LKPNI------------------------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HHHHHHHH--HSTTC------------------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHHHHH--hCccc------------------------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 66666555 33332 1244445555555555 555555555554321
Q ss_pred CCCCc------ccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004269 324 LQPSS------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 324 ~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 358 (764)
-.|+. .+|..+...+...|++++|...++.+.+..
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11221 244445555555666666666666665543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=5.3e-11 Score=113.31 Aligned_cols=201 Identities=7% Similarity=-0.130 Sum_probs=129.7
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
++..+..+...+...|+++.|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 34456666677777777777777777777653 3456667777777777777777777777775432 23455667777
Q ss_pred HHHhcc-CCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 166 GACAKL-HSMVHANLCLDLMDSRMVGKN-EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 166 ~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
..+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++.+.+..+.+...+..+..++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777777 777777777777766222222 445666666666677777777777766666556666666666677777777
Q ss_pred HHHHHHHHHHHHhhccC-cchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 244 KSAYETLQHMVALAMMG-KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
++|...++.+.+. .| +. ...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSR--VEVLQ------------------------------ADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH--HCSCC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCC------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777666652 22 21 13455555666666666666666666654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=4.2e-11 Score=116.48 Aligned_cols=201 Identities=11% Similarity=-0.047 Sum_probs=123.5
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+...|+++.|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 3445666666777777777777777777653 3456667777777777777777777777765432 234556666777
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.|...|++++|.+.|+.+...+..| +...+..+...+...|++++|.+.++...+..+.+..++..+..+|...|++++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766622233 334555555566666666666666666665555555566666666666666666
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
|...|+.+.+ ..|+. ...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~--~~~~~------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQN------------------------------ARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHT--TSCCC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCcCc------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666554 22222 134555555556666666666666665543
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=6.6e-11 Score=121.35 Aligned_cols=233 Identities=10% Similarity=-0.050 Sum_probs=187.5
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC-HHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY-LEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
..|..+..++...|+++.|++.+++.++.. +-+...|+.+..+|...|+ +++|+..|++..+.+ +-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 457777778888899999999999999875 4567788889999999996 999999999987654 345678899999
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc-cCCHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 245 (764)
++.+.|++++|+..|+.+.+..+. +..+|..+..++...|++++|...++.+++..+.+..+|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999886543 677888888899999999999999999999888899999999999988 666577
Q ss_pred H-----HHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC--CHHHHHHHHHH
Q 004269 246 A-----YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ--NSGLAEQLMLQ 318 (764)
Q Consensus 246 A-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~ 318 (764)
| +..|++..+ +.|+. ...|+.+...+...| ++++|++.+.+
T Consensus 254 A~~~~el~~~~~Al~--l~P~~------------------------------~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHN------------------------------ESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HCCCC------------------------------HHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 7 588888887 56655 258888888888888 68899999988
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCC
Q 004269 319 MQSLGLQPSSHTYDGFIRAIVSDR---------GLRNGMEVLKIM-QQNN 358 (764)
Q Consensus 319 m~~~g~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~-~~~~ 358 (764)
+ +. ...+...+..+...+.+.| .+++|..+++.+ .+.+
T Consensus 302 ~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 302 L-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp H-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred h-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 7 32 2334556777777777763 258888888888 5543
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=6.7e-11 Score=125.44 Aligned_cols=311 Identities=11% Similarity=0.026 Sum_probs=197.8
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCCh---hHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDP---LFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
+...+.+.|++++|+++|+...+.+ ++..+..+...+...|++ +.|.+.|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556788999999999999998776 333444555566667777 8999999988855 55556666664555
Q ss_pred cC-----CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 135 GG-----YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH---ANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 135 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.| ++++|..+|++..+. + +...+..|...|...+..+. +.+.+......| +...+..+...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 44 789999999998753 2 23377778888877655443 444454444443 455667777778887
Q ss_pred cChhHHHHHHHHHHhc-CCCCHhhHHHHHHHhhccC---CHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 207 KNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLR---DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+.++++......+.+. ...++.++..|..+|...| +.++|++.|++..+.|....
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a--------------------- 213 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA--------------------- 213 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH---------------------
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH---------------------
Confidence 8666555554444432 3344458899999999999 99999999999988553322
Q ss_pred CCccccchhhhhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-H--HhcCChhHHHHHHHHHH
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRT----QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA-I--VSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~ 355 (764)
..+..|...|... +++++|+..|++.. .| +...+..+-.. + ...+++++|...|+...
T Consensus 214 -----------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 214 -----------QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp -----------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 2446666777554 78999999999987 33 44555555555 3 46789999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCccHHHHHHHHHh----cCCHHHHHHHHHHHhc
Q 004269 356 QNNLKPQDSTIATLSVECSKAL-----ELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ 423 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~ 423 (764)
+.| +......|...|. .| +.++|...|.... .+++..+..|-..|.. ..++++|...|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 877 5566667777776 45 8888888888877 5566666666666655 3367777777766655
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=1.6e-11 Score=118.57 Aligned_cols=206 Identities=9% Similarity=-0.050 Sum_probs=162.9
Q ss_pred hhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHH
Q 004269 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 129 (764)
.....+..+...+...|++++|+..|+++.... +.+...+..+..++...|+++.|.+.++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344455566777888999999999999998765 4567788888999999999999999999999875 45778899999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcCh
Q 004269 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..|...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+... .+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999987653 34567888999999999999999999999987643 3677888899999999999
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++|...++.+.+..+.+..++..+..+|...|++++|...|+++.+ ..|+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~ 226 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDH 226 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcch
Confidence 9999999999988888899999999999999999999999999988 45544
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=6.5e-11 Score=116.57 Aligned_cols=244 Identities=9% Similarity=-0.063 Sum_probs=193.5
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc--HHHHHHHHHHH
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN--NKCYLLMMQAL 132 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~ 132 (764)
+......+...|++++|+..|+...+.. +.+...+..+..++...|+++.|.+.+++..+.+-.++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344666889999999999999998876 44566888889999999999999999999998432222 33488999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
...|++++|+..|++..+.. +.+...|..+...|...|++++|+..|+...+.. +.+..++..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997654 3355689999999999999999999999988762 22455666666345556699999
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCC---HHHHHHHHHHHHHhhcc-CcchhcccccccccccccCCCccCCcccc
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRD---LKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
.+.++.+.+..+.+...+..+..++...|+ .+.|...|++..+.... |+..
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------- 216 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY------------------------- 216 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-------------------------
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-------------------------
Confidence 999999999888888999999999998888 88899999998874211 2210
Q ss_pred chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc
Q 004269 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 329 (764)
......+|..+...|...|++++|.+.|++..+. .|+..
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHH
Confidence 0001248888999999999999999999999885 45543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=8.4e-11 Score=120.58 Aligned_cols=233 Identities=14% Similarity=0.068 Sum_probs=191.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC-HHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
+...|..+...+...|++++|+..|++..+.+ +-+...|+.+..++...|+ +++|+..|+......+. +...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 34578888889999999999999999998654 3456789999999999996 99999999999987544 67789999
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCC
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
-.++...|++++|...++.+++..+.+..+|..+..++...|++++|+..|+++.+ +.|+.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~----------------- 233 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRN----------------- 233 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTC-----------------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCC-----------------
Confidence 99999999999999999999999999999999999999999999999999999998 55554
Q ss_pred CccCCccccchhhhhhHHHHHHHHHc-cCCHHHH-----HHHHHHHHHCCCCCC-cccHHHHHHHHHhcC--ChhHHHHH
Q 004269 280 PIPLNALPVMKVLRWSFSDVIHACGR-TQNSGLA-----EQLMLQMQSLGLQPS-SHTYDGFIRAIVSDR--GLRNGMEV 350 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a-----~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~--~~~~a~~~ 350 (764)
...|+.+..++.. .|..++| +..|++.... .|+ ...|..+...+...| ++++|.+.
T Consensus 234 -------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 234 -------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp -------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 2589999999998 6665777 5888888875 444 456777777777777 68889998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-hhC
Q 004269 351 LKIMQQNNLKPQDSTIATLSVECSKAL---------ELDLAEALLDQI-SRC 392 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~-~~~ 392 (764)
+..+ +... .+...+..+...|.+.| .+++|..+|+.+ .+.
T Consensus 299 ~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 299 LLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHh-ccCC-CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 8887 4332 35566778888888764 257888888888 554
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.6e-11 Score=128.98 Aligned_cols=277 Identities=10% Similarity=-0.113 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCC----hhcHHHHHHHhhCCCChhHHHHHHHHHHHc----Cccc-cHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEK----EIGL-NNK 123 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 123 (764)
..+......+...|++++|+..|++..... +.+ ...+..+...+...|+++.|...+++..+. +-.| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344555677888999999999999988765 223 246778888888999999999999987653 2122 355
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCC--------------------HHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHS--------------------MVHANL 179 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 179 (764)
++..+...|...|++++|...+++..+...-.++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 7888888999999999999999877543211112 3478888888999999 999998
Q ss_pred HHHHHhhc----CCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC--CCC----HhhHHHHHHHhhccCCHHHHHH
Q 004269 180 CLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY--SLS----IFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 180 ~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~ 248 (764)
.++..... +..| ...++..+...+...|++++|...++...+.. .++ ..++..+..+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88776542 1111 23467777788888999999999998887631 122 2378888888999999999999
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPS 327 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~ 327 (764)
.+++..+........ .....++..+...+...|++++|...|++..+... .++
T Consensus 249 ~~~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 249 YYKKTLLLARQLKDR--------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcCc--------------------------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 998887632221110 00125778888888899999999988888765311 011
Q ss_pred ----cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 328 ----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 328 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
..++..+...+...|++++|...+++..+
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33555666667777777777777776654
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=2.7e-11 Score=123.38 Aligned_cols=278 Identities=10% Similarity=-0.123 Sum_probs=189.6
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCC----hhcHHHHHHHhhCCCChhHHHHHHHHHHHc----Cc-cccHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEK----EI-GLNNK 123 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~ 123 (764)
..+......+...|++++|+..|+++.... +.+ ...+..+...+...|+++.|.+.+++..+. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 344455677888999999999999988765 223 356778888899999999999999887653 21 22356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCC--------------------HHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHS--------------------MVHANL 179 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 179 (764)
++..+...|...|++++|...+++..+...-.++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7888888999999999999999887543211122 3377888888888899 899988
Q ss_pred HHHHHhhc----CCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC--C----CHhhHHHHHHHhhccCCHHHHHH
Q 004269 180 CLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--L----SIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 180 ~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
.++..... +..| ...++..+...+...|++++|...++...+..+ + ...++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776442 1111 233667777788888999999988888875311 1 13377788888888899999988
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PS 327 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~ 327 (764)
.+++..+........ .....++..+...+...|++++|...+++....... .+
T Consensus 245 ~~~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 245 YYKKTLLLARQLKDR--------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhcch--------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 888877632221110 000246777788888888888888888776542100 01
Q ss_pred ----cccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 328 ----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 328 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
..++..+...+...|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 224445555566666666666666665543
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=3.4e-11 Score=116.26 Aligned_cols=165 Identities=10% Similarity=-0.077 Sum_probs=74.4
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
+..|..+...+...|+++.|..+|+++.+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 99 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGN 99 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHH
Confidence 3445555555555566666666666655543 3345555555555666666666666666554332 223445555555
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+...|++++|...|+.+.+... .+...+..+...+...|++++|...++.+.+..+.+...+..+..++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555554321 13344444444455555555555555554444444444444444445555555555
Q ss_pred HHHHHHHHH
Q 004269 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~~~~ 255 (764)
...|+++.+
T Consensus 179 ~~~~~~~~~ 187 (243)
T 2q7f_A 179 LSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=1.9e-08 Score=110.18 Aligned_cols=471 Identities=9% Similarity=0.035 Sum_probs=249.7
Q ss_pred CcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC---HHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY---LEEASN 143 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 143 (764)
...+.+..|+..+..+ +.|...|..+++.+.+.++++.++.+|+++... .+.+...|...+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455555566665555 578888999999888888899999999998887 46677788888888888888 999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCH--------HHHHHHHHHHhhc-CC-CCC-hhhHHHHHHHHH--------
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSM--------VHANLCLDLMDSR-MV-GKN-EVTYTELLKLAV-------- 204 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~-~p~-~~t~~~ll~~~~-------- 204 (764)
+|++.......+|++..|..-+.-..+.++. +...++|+..... |. .|+ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9998875432347777777777655554443 3344677765543 55 554 346666665432
Q ss_pred -hhcChhHHHHHHHHHHhcCCCC--HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCc
Q 004269 205 -WQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 205 -~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
..++++.+..+|...+.. |.. ..+|......-...+. ..+.+++.+..
T Consensus 205 eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~--------------------------- 255 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS--------------------------- 255 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------------
T ss_pred HHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------------
Confidence 234566777777777642 211 1222211111000000 00111111100
Q ss_pred cCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH--CCCC---CCc--------------------ccHHHHHH
Q 004269 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS--LGLQ---PSS--------------------HTYDGFIR 336 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~---p~~--------------------~~~~~ll~ 336 (764)
.+++.|...+.++.. .++. |.. ..|...+.
T Consensus 256 -------------------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~ 310 (679)
T 4e6h_A 256 -------------------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR 310 (679)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH
Confidence 111222222222111 0000 000 00111110
Q ss_pred HHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhCC--CCccHHHHHHHH
Q 004269 337 AIVSDR--------GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE-ALLDQISRCT--NPKPFSAFLAAC 405 (764)
Q Consensus 337 ~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~--~~~~~~~li~~~ 405 (764)
+.+.. ..+.+..+|+++...... +...+-..+..+...|+.+.|. .+|+...... +...|-.++...
T Consensus 311 -fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 311 -WESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQY 388 (679)
T ss_dssp -HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -HHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00000 012233444444443222 4444445555555555555554 5555544321 222344455555
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004269 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485 (764)
Q Consensus 406 ~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (764)
-+.|++++|..+|+.+...+ |. .+..+ .... |+.
T Consensus 389 e~~~~~e~aR~iyek~l~~l-~~--~~~~~----------------------------------~~~~-p~~-------- 422 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRI-HL--DLAAL----------------------------------MEDD-PTN-------- 422 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HH--HHHHH----------------------------------HHHS-TTC--------
T ss_pred HHhCCHHHHHHHHHHHHHHH-HH--Hhhhh----------------------------------hhcc-Ccc--------
Confidence 55666666666666554300 00 00000 0000 000
Q ss_pred HHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-hCChhHH
Q 004269 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSI-IRCFKSA 563 (764)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~-~g~~~~a 563 (764)
+...... .......|...+....+.|+.+.|..+|.+..+. + .+....|......-.+ .++.+.|
T Consensus 423 --------~~~~~~~----~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 423 --------ESAINQL----KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp --------HHHHHHH----HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred --------hhhhhhh----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHH
Confidence 0000000 0001225666667667778888888888888775 2 1122333322222223 3558999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004269 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
..+|+...+. ++-+...|...++.....|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.
T Consensus 490 r~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 490 CKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888876 44466677788888888899999999999988653222 34578888888888999999999999998
Q ss_pred HCCCCCCHHHHHHHHH
Q 004269 642 QNKVQPDPSTCHFVFS 657 (764)
Q Consensus 642 ~~~~~p~~~~~~~ll~ 657 (764)
+ ..|+......+..
T Consensus 569 ~--~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 569 E--KFPEVNKLEEFTN 582 (679)
T ss_dssp H--HSTTCCHHHHHHH
T ss_pred H--hCCCCcHHHHHHH
Confidence 6 3455544444433
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=3.1e-11 Score=127.06 Aligned_cols=242 Identities=10% Similarity=-0.132 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCCh----hcHHHHHHHhhCCCChhHHHHHHHHHHHc----C-ccccHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA----DDFFHILNYCARSPDPLFVMETWRMMEEK----E-IGLNNK 123 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~ 123 (764)
..+......+...|++++|+..|+.....+ +.+. ..+..+..++...|+++.|.+.+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344455667788899999999999988765 2233 45777778888889999999988887764 1 133456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhc---C-CCCChhhhHHHHHHHhccCC-----------------HHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERY---G-IYPILPVYNSFLGACAKLHS-----------------MVHANLCLD 182 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 182 (764)
.+..+...|...|++++|...|++..+.. + .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77888888889999999999888765421 1 11223467778888888888 888888877
Q ss_pred HHhhc----CCC-CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC--CC----HhhHHHHHHHhhccCCHHHHHHHHH
Q 004269 183 LMDSR----MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LS----IFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 183 ~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
+..+. +-. ....++..+...+...|++++|...+++..+..+ ++ ..++..+..+|...|++++|...|+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 75432 111 1223666677777788888888888877765321 11 2267777777778888888888877
Q ss_pred HHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
+..+........ .....++..+...+...|++++|...|++...
T Consensus 288 ~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 288 RTLALAVELGER--------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH--------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776532211110 00014666677777777777777777776654
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.30 E-value=1.5e-09 Score=106.89 Aligned_cols=221 Identities=9% Similarity=-0.075 Sum_probs=110.2
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK----GGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 164 (764)
.+..+...+...|+++.|.+.|++..+.+ +...+..+...|.. .|++++|...|++..+. + +...+..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHHHH
Confidence 34444444444455555555555544422 23344444444444 55555555555554432 1 33444444
Q ss_pred HHHHhc----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----hcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 165 LGACAK----LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 165 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
...|.. .+++++|+..|+...+.+ +..++..+-..|.. .+++++|...++...+.. +..++..+...
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 445544 555555555555544432 34444444444444 455555555555444321 33344444445
Q ss_pred hhc----cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHc----cCC
Q 004269 237 FTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR----TQN 308 (764)
Q Consensus 237 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~ 308 (764)
|.. .+++++|...|++..+.+ +. ..+..+...|.. .++
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------------------~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK--DS--------------------------------PGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CH--------------------------------HHHHHHHHHHHHTCSSCCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC--CH--------------------------------HHHHHHHHHHHcCCCCCcc
Confidence 544 556666666666655421 11 255555555655 666
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 004269 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 358 (764)
+++|+..|++..+.+ +...+..+-..+.. .+++++|...|+...+.|
T Consensus 202 ~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 202 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666666543 23344445555555 566666666666665544
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=1.7e-09 Score=106.43 Aligned_cols=226 Identities=8% Similarity=-0.104 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
++..+..+...|...|++++|...|++..+ +.+...+..+...|.. .+++++|+..|+...+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 455666666777777777777777777654 2234556666666766 777777777777766653 44555
Q ss_pred HHHHHHHHh----hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccc
Q 004269 197 TELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272 (764)
Q Consensus 197 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (764)
..+-..+.. .+++++|...++...+. .+..++..+...|...
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~-------------------------------- 123 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDG-------------------------------- 123 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcC--------------------------------
Confidence 555555555 55555555555544432 1344444444444440
Q ss_pred cccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHH
Q 004269 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGM 348 (764)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~ 348 (764)
....+++++|+..|++..+.+ +...+..+-..+.. .+++++|.
T Consensus 124 ------------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 124 ------------------------------KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp ------------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred ------------------------------CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 000444455555554444432 22333333344443 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh----cCCHHHHHHHHHH
Q 004269 349 EVLKIMQQNNLKPQDSTIATLSVECSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAK 420 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~ 420 (764)
..++...+.+ +...+..+...|.. .++.++|...|+.....++...+..+...|.+ .+++++|...|++
T Consensus 171 ~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 171 ASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 5555554442 23444445555555 55555555555555544344445555556666 6667777777766
Q ss_pred Hhc
Q 004269 421 MRQ 423 (764)
Q Consensus 421 m~~ 423 (764)
..+
T Consensus 248 a~~ 250 (273)
T 1ouv_A 248 GCK 250 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=3.3e-11 Score=126.91 Aligned_cols=237 Identities=10% Similarity=-0.072 Sum_probs=153.3
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhc----CC-CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhc------CCCCHhh
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSR----MV-GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH------YSLSIFS 229 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ 229 (764)
|..+...|...|++++|+..|++..+. +- .....++..+...+...|++++|...++...+. .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444444444444444443321 00 112233444444455555555555555554432 1222345
Q ss_pred HHHHHHHhhccCC-----------------HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 230 LRKFVWSFTRLRD-----------------LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 230 ~~~li~~~~~~g~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
+..+...|...|+ ++.|...+++..+........ ...
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~--------------------------~~~ 222 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR--------------------------GAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH--------------------------HHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH--------------------------HHH
Confidence 6667777777777 788888877765521111110 001
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-----PQ 362 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 362 (764)
..+|..+...+...|++++|+..|++..+.... ++ ..++..+...+...|++++|...+++..+.... ..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 258888999999999999999999998753211 11 126778888899999999999999988763211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 363 DSTIATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
..++..+...|...|++++|...+++..... ...++..+...|.+.|++++|...|++..+
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788899999999999999999876532 234677888999999999999999998876
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.28 E-value=2e-10 Score=120.44 Aligned_cols=278 Identities=9% Similarity=-0.067 Sum_probs=188.7
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCC-
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYP- 156 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~- 156 (764)
.....+......+...|+++.|...|++..+.+ +.+ ..++..+...|...|++++|...|++..+. .+-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344456667778889999999999999999874 223 357888899999999999999999876432 11112
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHhhcC--------------------hhH
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKN--------------------LSA 211 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~--------------------~~~ 211 (764)
...++..+...|...|++++|...++...+.... ++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2447888888999999999999999887653111 12 3477788888889999 999
Q ss_pred HHHHHHHHHhc---C---CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 212 VHEIWEDYIKH---Y---SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 212 a~~~~~~~~~~---~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
|...+....+. . +....++..+..+|...|++++|...+++..+........
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------- 223 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc----------------------
Confidence 99998887652 1 1224578888899999999999999999987732221110
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 360 (764)
.....+|..+...+...|++++|...+++....... ++ ..++..+...+...|++++|...++...+....
T Consensus 224 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 224 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 011247888889999999999999999887642100 11 335556666677777777777777766542111
Q ss_pred -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004269 361 -PQ----DSTIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 361 -~~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 389 (764)
.+ ..++..+...|...|++++|...+++.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01 223334444444445555544444443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=1.6e-10 Score=117.56 Aligned_cols=275 Identities=9% Similarity=-0.070 Sum_probs=187.0
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCC-CChhh
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIY-PILPV 160 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~-~~~~~ 160 (764)
.+......+...|+++.|..+++++.+.+ +.+ ...+..+...|...|++++|...+++..+. .+.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667778899999999999999874 223 367888899999999999999999876432 1111 22457
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHhhcC--------------------hhHHHHH
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKN--------------------LSAVHEI 215 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~ 215 (764)
+..+...+...|++++|...++...+.... ++ ..++..+...+...|+ ++.|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788889999999999999999887653111 12 3377778888888999 8999988
Q ss_pred HHHHHhc------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccc
Q 004269 216 WEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 216 ~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
++...+. .+....++..+...+...|++++|...+++..+........
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------- 219 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh--------------------------
Confidence 8887652 12224478888888999999999999999887632221110
Q ss_pred hhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----
Q 004269 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK---- 360 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---- 360 (764)
.....++..+...+...|++++|...+++...... .++ ..++..+...+...|++++|...++...+....
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 00124788888889999999999999888764210 011 335556666777777777777777766542110
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 361 -PQDSTIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 361 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 390 (764)
....++..+...|.+.|++++|...+++..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 012234445555555555555555555544
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=1.2e-07 Score=103.77 Aligned_cols=459 Identities=10% Similarity=0.011 Sum_probs=259.5
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC---HHHHH
Q 004269 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS---MVHAN 178 (764)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 178 (764)
........+++.+..+ +-|...|..++..+.+.+.++.+..+|+++.... +.....|..-+..-.+.++ ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3444555667666665 5689999999999999999999999999998764 4456678888888888888 99999
Q ss_pred HHHHHHhhcC-CCCChhhHHHHHHHHHhhcCh--------hHHHHHHHHHHhc--C--CCCHhhHHHHHHHhhc------
Q 004269 179 LCLDLMDSRM-VGKNEVTYTELLKLAVWQKNL--------SAVHEIWEDYIKH--Y--SLSIFSLRKFVWSFTR------ 239 (764)
Q Consensus 179 ~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~--~--~~~~~~~~~li~~~~~------ 239 (764)
.+|++..... ..|+...|..-+....+.++. +.+.++|+..+.. . +.+...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999998864 147888888888766665554 3455788877753 3 2345677777765432
Q ss_pred ---cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHH
Q 004269 240 ---LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316 (764)
Q Consensus 240 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 316 (764)
.++++.+.++|+.+.. .|..... .+|.. |
T Consensus 204 ~eeq~~~~~~R~iy~raL~---iP~~~~~----------------------------~~w~~-----------------Y 235 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC---QPMDCLE----------------------------SMWQR-----------------Y 235 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT---SCCSSHH----------------------------HHHHH-----------------H
T ss_pred HHHHhHHHHHHHHHHHHHh---CccHHHH----------------------------HHHHH-----------------H
Confidence 3356677778877764 1221000 12221 1
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH--CCCC---CCH-HHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 004269 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ--NNLK---PQD-STIATLSVECSKAL-ELDLAEALLDQI 389 (764)
Q Consensus 317 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~-~~~~~li~~~~~~g-~~~~a~~~~~~~ 389 (764)
....+. + +..+...++.- ...++..|...+.++.. .++. |.. .+.. ....-..+ .......+
T Consensus 236 ~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~l---- 304 (679)
T 4e6h_A 236 TQWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLI---- 304 (679)
T ss_dssp HHHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHH----
T ss_pred HHHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHHHH----
Confidence 111110 0 11111111111 11233344444444322 1111 000 0000 00000000 00000111
Q ss_pred hhCCCCccHHHHHHHHHhcC-------CHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHH
Q 004269 390 SRCTNPKPFSAFLAACDTMD-------KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462 (764)
Q Consensus 390 ~~~~~~~~~~~li~~~~~~~-------~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (764)
|...+.---..+ ..+.+..+|++...-+.-....|
T Consensus 305 --------W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW------------------------------ 346 (679)
T 4e6h_A 305 --------WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIW------------------------------ 346 (679)
T ss_dssp --------HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH------------------------------
T ss_pred --------HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHH------------------------------
Confidence 222221111111 12234455665554111111111
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHH-HHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004269 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI-QYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
-..+..+...|+.++|. .+|+.. ..+.+...|-..+...-+.|++++|.++|+.+....
T Consensus 347 ------------------~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 347 ------------------FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp ------------------HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 11122222233333443 444332 122344456666666667777777777777766531
Q ss_pred ---------CCCC------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 004269 540 ---------IPPN------------AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY-GDFDE 597 (764)
Q Consensus 540 ---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~ 597 (764)
-.|+ ...|...+....+.|+.+.|..+|..+.+.-..+....|...+..-.+. ++.+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 0132 2357777777778899999999999998861112233343333333344 45899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP--DPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
|.++|+...+. ++.+...|...+......|+.+.|..+|++.+.....+ ....|...+..=.+.|+.+.+.++.+++
T Consensus 489 Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 489 ACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999875 45577788889998889999999999999998643222 2346666777777889999999999988
Q ss_pred HHhh
Q 004269 676 SMRM 679 (764)
Q Consensus 676 ~~~~ 679 (764)
....
T Consensus 568 ~~~~ 571 (679)
T 4e6h_A 568 FEKF 571 (679)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 6543
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=1.7e-09 Score=108.43 Aligned_cols=220 Identities=9% Similarity=0.008 Sum_probs=177.1
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhh-------CCCCh-------hHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCA-------RSPDP-------LFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
++|+.+|+...... +.++..|..+...+. +.|++ +.|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988765 567777777777665 35776 8999999999983124466789999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCC-hh-hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-hhcChhH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPI-LP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV-WQKNLSA 211 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~ 211 (764)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+... ++...|........ ..|+.+.
T Consensus 112 ~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999753 454 33 799999999999999999999999988643 24444443333222 3699999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhh-ccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|..+|+..++..+.+...|..++..+.+.|+++.|..+|++..+.. +.|+..
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--------------------------- 240 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--------------------------- 240 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC---------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH---------------------------
Confidence 9999999999888899999999999999999999999999998842 233211
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
...|..++....+.|+.+.|..+++++.+.
T Consensus 241 --~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 --GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp --HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 148889999999999999999999999875
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=3.9e-09 Score=105.80 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHcCccccHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHhhhcCCCC-ChhhhHHHHHHH
Q 004269 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALC-------KGGYL-------EEASNLIYFLGERYGIYP-ILPVYNSFLGAC 168 (764)
Q Consensus 104 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~ 168 (764)
+.|..+|++.++.. +.++..|..++..+. +.|++ ++|..+|++..+. +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 57888888888864 557778887777765 35775 8999999988641 234 445788888888
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCCh-h-hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh-ccCCHHH
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKNE-V-TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-RLRDLKS 245 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 245 (764)
.+.|++++|..+|+...+. .|+. . .|..+...+.+.|+++.|..+|+...+..+.+...|........ ..|+.+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8899999999999998874 4443 2 78888888888888888888888888766666666655444422 3588888
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-C
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-L 324 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~ 324 (764)
|..+|+...+ ..|+. ...|..++..+.+.|++++|..+|++..... +
T Consensus 188 A~~~~~~al~--~~p~~------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 188 AFKIFELGLK--KYGDI------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHHHHHH--HHTTC------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 8888888877 33433 1477777888888888888888888887753 3
Q ss_pred CCC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004269 325 QPS--SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 325 ~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 358 (764)
.|+ ...|..++....+.|+.+.|..+++.+.+..
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 443 3356666666677777777777777776643
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.22 E-value=1.5e-09 Score=99.52 Aligned_cols=167 Identities=8% Similarity=-0.042 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
++.+|..+...|...|++++|++.|++..+.+ +-+..+|..+...|.+.|++++|+..+......... +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 45566666667777777777777777665543 234456666666667777777777777666654322 444555555
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
..+...++++.+...+....+..+.+..++..+..+|.+.|++++|++.|++..+ ..|+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~------------------ 140 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGF------------------ 140 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchh------------------
Confidence 5666667777777777776666666677777777777777777777777777766 44443
Q ss_pred ccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+|..+..+|.+.|++++|++.|++..+.
T Consensus 141 ------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 141 ------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 146777777777777777777777777653
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=2.7e-10 Score=121.59 Aligned_cols=214 Identities=8% Similarity=-0.148 Sum_probs=182.3
Q ss_pred CcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCCh-hHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDP-LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
.+++++..++...... +.+...+..+..++...|++ +.|.+.|++..+.. +.+...|..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567777777766544 45677888888999999999 99999999999875 456889999999999999999999999
Q ss_pred HHHhhhcCCCCChhhhHHHHHHHhcc---------CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh--------cC
Q 004269 146 YFLGERYGIYPILPVYNSFLGACAKL---------HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ--------KN 208 (764)
Q Consensus 146 ~~m~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------~~ 208 (764)
++..+. .|+...+..+...|... |++++|+..|++..+..+. +...|..+..++... |+
T Consensus 161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 998754 47778899999999999 9999999999999886433 677888898899888 99
Q ss_pred hhHHHHHHHHHHhcCC---CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 209 LSAVHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
+++|...|+...+..+ .+...|..+..+|...|++++|...|++..+ ..|+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~----------------------- 291 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAW----------------------- 291 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC-----------------------
Confidence 9999999999998766 7899999999999999999999999999988 55654
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHH
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 318 (764)
...+..+...+...|++++|++.+.+
T Consensus 292 -------~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 292 -------PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 24788888888888999888876544
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.21 E-value=1.1e-09 Score=100.51 Aligned_cols=170 Identities=11% Similarity=-0.057 Sum_probs=134.1
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
++..|..+..++...|+++.|.+.|++.++.+ +-+...+..+...|.+.|++++|...++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 55677788888888888888888888888775 4467778888888888888888888888776543 23455667777
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
..+...++++.|...+.......+ .+...+..+...+...|++++|.+.+++..+..|.+..++..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 778888888888888888776532 2566777778888888888888888888888788888889999999999999999
Q ss_pred HHHHHHHHHHhhccCc
Q 004269 246 AYETLQHMVALAMMGK 261 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~ 261 (764)
|.+.|++..+ +.|+
T Consensus 160 A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHH--TTHH
T ss_pred HHHHHHHHHh--CCcc
Confidence 9999999887 4454
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=1e-09 Score=114.09 Aligned_cols=234 Identities=10% Similarity=-0.059 Sum_probs=172.3
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHc----Cccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhhhH
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEK----EIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-----LPVYN 162 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ 162 (764)
....+...|+++.|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+...-.++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999999874 2122 3468889999999999999999999887643221122 34788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHhhcChhHHHHHHHHHHh-----cC-CCCHhhHH
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKNLSAVHEIWEDYIK-----HY-SLSIFSLR 231 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~ 231 (764)
.+...|...|++++|+..|+...+.... ++ ..++..+...|...|++++|...+++..+ +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999887653111 11 23778888899999999999999999987 34 44567899
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC---
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN--- 308 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 308 (764)
.+..+|.+.|++++|...+++..+.....+.+.. ...++.+...+...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY---------------------------LSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------------------------HHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------------------------HHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999999998873222111100 1246677788888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 309 SGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
+++|+.++++. +..|+ ...+..+...+...|++++|...++...+
T Consensus 322 ~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 322 IQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777766655 22233 23555666777788888888888877654
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.18 E-value=8e-10 Score=114.90 Aligned_cols=230 Identities=9% Similarity=-0.046 Sum_probs=140.4
Q ss_pred HhccCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhc--CCC-----CHhhHHHHHH
Q 004269 168 CAKLHSMVHANLCLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH--YSL-----SIFSLRKFVW 235 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-----~~~~~~~li~ 235 (764)
+...|++++|...|+...+. +-.+ ...++..+...+...|+++.|...+.+..+. ..+ ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34445555555555544332 0000 1234444444555555555555555555442 111 1345667777
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
+|...|++++|...|++..+.....+.. .....+++.+...|...|++++|+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQP--------------------------QLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCCh--------------------------HHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7888888888888888776632221110 00124777888888888888888888
Q ss_pred HHHHHHC----CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHH
Q 004269 316 MLQMQSL----GL-QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN----LKPQDSTIATLSVECSKALE---LDLAE 383 (764)
Q Consensus 316 ~~~m~~~----g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~ 383 (764)
|++..+. +. .....++..+...+...|++++|...+++..+.. -......+..+...|...|+ +++|.
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 8887652 22 2234467777778888888888888888776532 11112234567777778888 77777
Q ss_pred HHHHHHhhCC-CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 384 ALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 384 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.+++.....+ ....+..+...|...|++++|...|++..+
T Consensus 327 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777663321 334566788889999999999999888765
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=1e-09 Score=117.04 Aligned_cols=211 Identities=12% Similarity=-0.023 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH-HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHH
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL-EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 181 (764)
++.+.+.++...... +.+...+..+...|...|++ ++|++.|++..+.+ +.+...|..+...|.+.|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556666777655543 45778899999999999999 99999999987654 335678999999999999999999999
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHhh---------cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc--------CCHH
Q 004269 182 DLMDSRMVGKNEVTYTELLKLAVWQ---------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL--------RDLK 244 (764)
Q Consensus 182 ~~m~~~g~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 244 (764)
+...+. .|+..++..+...+... |++++|.+.+++..+..+.+...|..+..+|... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999886 46778888898899999 9999999999999998888999999999999999 9999
Q ss_pred HHHHHHHHHHHhhccC---cchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 245 SAYETLQHMVALAMMG---KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 245 ~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
+|...|++..+ +.| +. ...|..+...|...|++++|++.|++..+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSN------------------------------PDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcccC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998 445 32 25889999999999999999999999987
Q ss_pred CCCCCC-cccHHHHHHHHHhcCChhHHHHHHH
Q 004269 322 LGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 322 ~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
.. |+ ...+..+..++...|++++|...+.
T Consensus 287 l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 287 LD--PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hC--CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53 44 4456677777777787777776543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=9.7e-11 Score=117.84 Aligned_cols=249 Identities=10% Similarity=-0.024 Sum_probs=171.3
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhcccc--
Q 004269 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-- 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-- 81 (764)
|.....+..+...+...|++++|. .++++.. +.+....+..+......+..+...+...|++++|+..|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAV-PLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455667888999999999999999 6655542 11111111123334556667778888999999999999998754
Q ss_pred ----C-CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc------Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 82 ----H-HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------EI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 82 ----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
+ .+.....+..+...+...|+++.|.+.+++..+. +- +.....+..+...|...|++++|..+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1334566888889999999999999999998875 22 3345678889999999999999999999886
Q ss_pred hhc-----C-CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc-------CCCCChh-------hHHHHHHHHHhhcCh
Q 004269 150 ERY-----G-IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR-------MVGKNEV-------TYTELLKLAVWQKNL 209 (764)
Q Consensus 150 ~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-------t~~~ll~~~~~~~~~ 209 (764)
+.. + .+....++..+...|...|++++|...|+.+.+. ...+... .+..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 531 1 1223457888999999999999999999998763 1122221 122222333345556
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+...+.......+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666677766665666778899999999999999999999999887
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=1.1e-09 Score=109.89 Aligned_cols=240 Identities=8% Similarity=-0.109 Sum_probs=151.0
Q ss_pred hhhhhHHHHHHHHHhhCCcchHHHHHHhcccc-------CCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc------
Q 004269 50 SISKATQMQIVDALCRGERSRASHLLLNLGHA-------HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------ 116 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 116 (764)
.....+..+...+...|++++|+.+|+++... ..+.....+..+..++...|+++.|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34555666777788889999999999888763 22344556777888888888999998888888764
Q ss_pred C-ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc--
Q 004269 117 E-IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY-----GI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSR-- 187 (764)
Q Consensus 117 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 187 (764)
+ .+....++..+...|...|++++|...|++..+.. +- +.....+..+...+...|++++|+..|+...+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2 13345677888888888899999988888876531 11 223446777888888888888888888887653
Q ss_pred ----CCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhc--------CCCCHh-------hHHHHHHHhhccCCHHHHH
Q 004269 188 ----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH--------YSLSIF-------SLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 188 ----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~-------~~~~li~~~~~~g~~~~A~ 247 (764)
+..| ...++..+...+...|++++|...++.+.+. ..+... .+..+...+...+.+..|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1122 2345666777777788888888887777642 111111 1111111222222333333
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
..+..... ..|.. ..+|..+...|.+.|++++|...|++..+
T Consensus 265 ~~~~~~~~--~~~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKV--DSPTV------------------------------TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----------CHHH------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCC--CCchH------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333322 11111 25788888899999999999999888765
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=5.3e-08 Score=100.63 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=95.6
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCC-----CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYS-----LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (764)
..+...+...|++++|...++...+..+ ....++..+...+...|++++|...+++..+....++.+..
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~------ 212 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD------ 212 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh------
Confidence 3344444555555555555555543211 12345666777888889999999998888763222221000
Q ss_pred ccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCChhHHH
Q 004269 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS---HTYDGFIRAIVSDRGLRNGM 348 (764)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~ 348 (764)
.........+..+...|++++|...+++.......+.. ..+..+...+...|++++|.
T Consensus 213 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 213 -------------------WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 273 (373)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 00001113344577899999999999887654321111 13455667777888888888
Q ss_pred HHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 349 EVLKIMQQN----NLKPQD-STIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 349 ~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 390 (764)
..++..... |..++. ..+..+...+...|+.++|...+.+..
T Consensus 274 ~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 274 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888776542 211112 134445555666666666666665554
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=9.4e-09 Score=106.49 Aligned_cols=305 Identities=9% Similarity=-0.003 Sum_probs=195.7
Q ss_pred hhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHH---------HHHHhccccCCCCCh-
Q 004269 18 CKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRAS---------HLLLNLGHAHHSLGA- 87 (764)
Q Consensus 18 ~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~---------~~~~~~~~~~~~~~~- 87 (764)
.+..+.++|. .+.+++. ..+..+ +-.++...+.-....+...-.+....+. ..++.+.....+.+.
T Consensus 23 i~~~~~~~A~-~l~~~i~--~~~~~~-~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 98 (378)
T 3q15_A 23 IRQFSVPDAE-ILKAEVE--QDIQQM-EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL 98 (378)
T ss_dssp HHTTCHHHHH-HHHHHHH--HHGGGB-CCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHH
T ss_pred HHHcCHHHHH-HHHHHHH--HHHHHh-cccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccH
Confidence 7788899998 6655442 222222 1122222111111122222234444444 666665432211111
Q ss_pred -h--cHHHHHHHhhCCCChhHHHHHHHHHHHcC--c---cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC---
Q 004269 88 -D--DFFHILNYCARSPDPLFVMETWRMMEEKE--I---GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP--- 156 (764)
Q Consensus 88 -~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 156 (764)
. .+......+...|+++.|...+++..+.- + +....++..+...|...|+++.|...+++..+...-.+
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 1 12334455668899999999999988642 1 11345788899999999999999999988754321111
Q ss_pred --ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc----CCC-CChhhHHHHHHHHHhhcChhHHHHHHHHHHh-----cCC
Q 004269 157 --ILPVYNSFLGACAKLHSMVHANLCLDLMDSR----MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-----HYS 224 (764)
Q Consensus 157 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~ 224 (764)
...+++.+...|...|++++|++.|+...+. +-. ....++..+...+...|++++|.+.+++..+ +.+
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 2447888999999999999999999887653 111 1234677788889999999999999999987 555
Q ss_pred CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH
Q 004269 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
....++..+..+|.+.|++++|...+++..+.....+.... ...++.+...+.
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~~~l~~ly~ 311 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY---------------------------KELFLFLQAVYK 311 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH---------------------------HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------------------------HHHHHHHHHHHh
Confidence 56788999999999999999999999999874322111000 135566666777
Q ss_pred ccCC---HHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 305 RTQN---SGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 305 ~~~~---~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
..++ +++|+..+++ .+..|+. ..+..+...+...|++++|...|+...+
T Consensus 312 ~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777 6677666665 2222222 2445566667777777777777776654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.05 E-value=7.9e-09 Score=94.50 Aligned_cols=163 Identities=11% Similarity=-0.095 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|+.+.... +.+...+..+...+...|+++.|.+.++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555666777888888888888777654 3455566666677777777777777777776653 3455666666667
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++...+... .+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 777777777777777665432 23444555566666666666666666666555421 133344444444444444444
Q ss_pred HHHHHHHH
Q 004269 212 VHEIWEDY 219 (764)
Q Consensus 212 a~~~~~~~ 219 (764)
|...++.+
T Consensus 163 A~~~~~~~ 170 (186)
T 3as5_A 163 ALPHFKKA 170 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.03 E-value=1.6e-08 Score=92.52 Aligned_cols=164 Identities=10% Similarity=-0.058 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345555566666666666666666654321 2344556666666666667777766666666542 2245556666666
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+...|++++|.+.++.+.+..+.+...+..+..++...|++++|...++++.+. .|+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~-------------------- 143 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNE-------------------- 143 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--------------------
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--Cccc--------------------
Confidence 666677777777777666666666666677777777777777777777776652 2322
Q ss_pred CCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...|..+...+...|++++|...+++..+
T Consensus 144 ----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 ----------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13666667777777777777777776654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.02 E-value=5e-08 Score=100.97 Aligned_cols=202 Identities=9% Similarity=0.036 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhc---CC----CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKH---YS----LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (764)
++..+...+...|+++.|...+....+. .. ....+++.+..+|...|+++.|...|++..+.....+..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---- 218 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---- 218 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH----
Confidence 3344444444555555555555444431 00 013355566666667777777777776665522111110
Q ss_pred ccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCcccHHHHHHHHHhcC
Q 004269 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS-----LGLQPSSHTYDGFIRAIVSDR 342 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~ 342 (764)
.....+++.+...|...|++++|+..|++... .. +....++..+...+.+.|
T Consensus 219 ----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g 275 (378)
T 3q15_A 219 ----------------------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAG 275 (378)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCC
Confidence 00014666777777777777777777777665 22 112445666666777777
Q ss_pred ChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCHHHH
Q 004269 343 GLRNGMEVLKIMQQNNL----KPQDSTIATLSVECSKALE---LDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERA 414 (764)
Q Consensus 343 ~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 414 (764)
++++|...+++..+... ......+..+...|...++ +.+|...++.....+ ....+..+...|.+.|++++|
T Consensus 276 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 355 (378)
T 3q15_A 276 QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355 (378)
T ss_dssp CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHH
Confidence 77777777777665321 1112234455555666666 666666666532211 223455677778888888888
Q ss_pred HHHHHHHhc
Q 004269 415 IKIFAKMRQ 423 (764)
Q Consensus 415 ~~l~~~m~~ 423 (764)
...|++..+
T Consensus 356 ~~~~~~al~ 364 (378)
T 3q15_A 356 AAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=1.1e-08 Score=113.64 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...|+.|...|.+.|++++|++.|++..+.+ +-+...|+.|..+|.+.|++++|+..|++..+.... +..+|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 45567777777777777777777777766543 223456777777777777777777777777664322 455677777
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
.++...|++++|.+.|++.++..+.+..+++.+..+|...|++++|+..|++..+ +.|+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~------------------ 144 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDF------------------ 144 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC------------------
Confidence 7777777777777777777776677777788888888888888888888888777 55554
Q ss_pred ccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...|..+...+...|++++|.+.+++..+
T Consensus 145 ------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 145 ------------PDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ------------hHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 25777788888888888877777776653
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=8.1e-08 Score=99.26 Aligned_cols=268 Identities=9% Similarity=-0.033 Sum_probs=178.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CCh----hhHHH
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNE----VTYTE 198 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 198 (764)
....+...|++++|...+++.....+ ..+. ..++.+...+...|++++|...+++....... ++. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445567777777777777654321 1111 13555666677778888887777776542111 111 23455
Q ss_pred HHHHHHhhcChhHHHHHHHHHHhc-----CC--C-CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccc
Q 004269 199 LLKLAVWQKNLSAVHEIWEDYIKH-----YS--L-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 270 (764)
+...+...|++++|...++...+. .+ | ....+..+..++...|++++|...+++..+........
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------- 171 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------- 171 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-------
Confidence 666677788888888888877752 11 2 34566778889999999999999999988732221110
Q ss_pred cccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHH-----HHHHHHHhcCCh
Q 004269 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYD-----GFIRAIVSDRGL 344 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~-----~ll~~~~~~~~~ 344 (764)
. ...+|..+...+...|++++|...+++.....-.++. ..+. .....+...|++
T Consensus 172 -------------------~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 172 -------------------Q-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp -------------------G-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -------------------H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 0 0147888899999999999999999998754222222 1122 222346789999
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------C-CccHHHHHHHHHhcCCHHH
Q 004269 345 RNGMEVLKIMQQNNLKPQ---DSTIATLSVECSKALELDLAEALLDQISRCT-------N-PKPFSAFLAACDTMDKPER 413 (764)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~-~~~~~~li~~~~~~~~~~~ 413 (764)
++|...++........+. ...+..+...+...|+.++|...++...... + ...+..+..++...|+.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999998876443221 2245677888999999999999998875431 1 1245556777889999999
Q ss_pred HHHHHHHHhc
Q 004269 414 AIKIFAKMRQ 423 (764)
Q Consensus 414 a~~l~~~m~~ 423 (764)
|...+++...
T Consensus 312 A~~~l~~al~ 321 (373)
T 1hz4_A 312 AQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=3.3e-09 Score=104.76 Aligned_cols=236 Identities=11% Similarity=-0.047 Sum_probs=162.4
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhcccc------C-CCCChhc
Q 004269 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA------H-HSLGADD 89 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 89 (764)
....|++++|. .++++.. +.+....+..+......+..+...+...|++++|+..|++.... + .+.....
T Consensus 11 ~~~~~~~~~A~-~~~~~al--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (283)
T 3edt_B 11 SSGLVPRGSAV-PLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT 87 (283)
T ss_dssp --CCSCSSSHH-HHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred cCCCCCHHHHH-HHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 45678888888 6655553 33444444444445667777788899999999999999988754 2 1234567
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC-------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh------cCCCC
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKE-------IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER------YGIYP 156 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~ 156 (764)
+..+..++...|+++.|.+.+++..+.. .+....++..+...|...|++++|...|++..+. ...+.
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 8889999999999999999999988751 1334668889999999999999999999988653 11122
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc-------CCCCChhh-HHHHHHHHHhhcChh------HHHHHHHHHHhc
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSR-------MVGKNEVT-YTELLKLAVWQKNLS------AVHEIWEDYIKH 222 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t-~~~ll~~~~~~~~~~------~a~~~~~~~~~~ 222 (764)
...++..+...|...|++++|...|+...+. ...+.... +..+.......+... .+...+......
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 3457888999999999999999999988763 12233333 333333333322222 222222222222
Q ss_pred CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+....++..+..+|...|++++|..+|++..+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334456788999999999999999999998875
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=1.7e-08 Score=112.03 Aligned_cols=165 Identities=12% Similarity=-0.015 Sum_probs=112.5
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...|+.+..++.+.|++++|.+.|++.++.. +-+...|..+..+|.+.|++++|+..|++..+.+ +-+...|+.+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4556666667777777777777777776653 3345666777777777777777777777665432 223456677777
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
+|.+.|++++|++.|++..+.... +..+|..+..++...|++++|.+.|++.++..+.+..++..+..+|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777776664322 4556677777777777777777777777776666777777777777777777777
Q ss_pred HHHHHHHHH
Q 004269 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~~~~ 255 (764)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=1.5e-08 Score=99.95 Aligned_cols=159 Identities=10% Similarity=-0.111 Sum_probs=103.7
Q ss_pred HhhCCcchHHHHHHhcccc-------CCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc------Cc-cccHHHHHHH
Q 004269 63 LCRGERSRASHLLLNLGHA-------HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------EI-GLNNKCYLLM 128 (764)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 128 (764)
...|++++|+.+|++..+. +.+.....+..+..++...|+++.|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777665541 22233456777777788888888888888877754 21 2345577778
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhc-----C-CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc------CCCC-Chhh
Q 004269 129 MQALCKGGYLEEASNLIYFLGERY-----G-IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR------MVGK-NEVT 195 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t 195 (764)
...|...|++++|...|++..+.. . .+....++..+...|...|++++|...|+...+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888888888775431 1 1223456777777788888888888888777653 1112 2345
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
+..+...+...|++++|...++...+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666667777777777777776654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.91 E-value=5.4e-08 Score=92.55 Aligned_cols=196 Identities=9% Similarity=-0.138 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+..|++......+++...+..+..++...|+++.|.+.+++..+.+ +.+...|..+...|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 45666677788999999999999999887743677777778888999999999999999999875 44677889999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCCh-------hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCC---hhhHHHHHHH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPIL-------PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN---EVTYTELLKL 202 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~ 202 (764)
...|++++|+..|++..+..+ .+. ..|..+...+...|++++|+..|+...+. .|+ ...+..+...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 999999999999999876542 233 45777888888999999999999998875 454 4456666666
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+...| ...++.+......+...|.... ....+.+++|...|++..+ +.|+.
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCC
Confidence 65443 3344554444444444454443 3345678999999999998 56665
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.89 E-value=9.1e-08 Score=90.98 Aligned_cols=183 Identities=10% Similarity=-0.107 Sum_probs=101.0
Q ss_pred hhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC
Q 004269 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 117 (764)
..|...+...|.+....+..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|.+.+++..+..
T Consensus 28 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 28 EKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 445555555542223333335566666777777777777766654 3344556666677777777777777777776653
Q ss_pred ccccH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 118 IGLNN-------KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI---LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 118 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+.+. ..|..+...+...|++++|+..|++..+. .|+ ...|..+...|...| ...++.+...
T Consensus 107 -p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~ 177 (228)
T 4i17_A 107 -PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPL 177 (228)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGG
T ss_pred -CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhc
Confidence 2233 34666666666777777777777766543 233 345555555554433 2334444433
Q ss_pred CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHH
Q 004269 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+. .+...|.... ....+.+++|...++...+..|.+..+...+
T Consensus 178 ~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 178 AS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp TT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 21 1233333322 2334556677777776666555554444433
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=3.6e-07 Score=88.49 Aligned_cols=182 Identities=12% Similarity=-0.034 Sum_probs=117.7
Q ss_pred HHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 71 ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
|+..|+++...+ +++...+..+..++...|++++|++++.+.+..|- .-+...+..++..|.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 34555555666777777888888888887766542 1355667777778888888888888888775
Q ss_pred hhcCCCC-----ChhhhHHHHHH--Hhc--cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 150 ERYGIYP-----ILPVYNSFLGA--CAK--LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 150 ~~~~~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
+. .| +..+...|..+ ... .++..+|..+|+++.+. .|+..+-..++.++...|++++|.+.++.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 34 23334444444 222 23788888888887664 3443333444557777888888888887665
Q ss_pred hc----------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 221 KH----------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 221 ~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+. .+.++.+...+|......|+ .|.+++.++.+ ..|+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 53 25566677566666666666 67778887777 55554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.83 E-value=3e-07 Score=91.06 Aligned_cols=104 Identities=6% Similarity=-0.132 Sum_probs=74.7
Q ss_pred hhHHHHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc
Q 004269 228 FSLRKFVWSFTRL-RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306 (764)
Q Consensus 228 ~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 306 (764)
.+++.+..+|... |++++|+..|++..+.....+.. .....+|+.+...+.+.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV--------------------------ALSNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh--------------------------HHHHHHHHHHHHHHHHh
Confidence 4566777888886 99999999999988732211110 00014788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 307 QNSGLAEQLMLQMQSLGLQPSSH------TYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 307 ~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
|++++|+..|++........... +|..+..++...|++++|...|+...+.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999998864322221 3556666777889999999988887764
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=2.7e-07 Score=78.86 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=87.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...|+.+...+. .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 34556666666777777777777665432 23445566666667777777777777777665432 2455666666667
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...|++++|.+.++.+.+..+.+..++..+..++...|++++|...|+++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777766666677777778888888888888888888776
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.76 E-value=1.4e-06 Score=84.48 Aligned_cols=252 Identities=8% Similarity=-0.060 Sum_probs=166.4
Q ss_pred HHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH
Q 004269 13 IADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92 (764)
Q Consensus 13 ~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (764)
-+....-.|.+..++ .=++ ++.|+.......-+.+++...|+++... ...|....+..
T Consensus 19 ~ikn~fy~G~yq~~i-~e~~------------~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~ 76 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCL-QEIE------------KFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDL 76 (310)
T ss_dssp HHHHHHTTTCHHHHT-HHHH------------TSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHH
T ss_pred HHHHHHHhhHHHHHH-HHHH------------hcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHH
Confidence 455566778888887 2111 1222222233334568888888887521 11233333444
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
+...+ ..+ +...+++..+.+ +++...+..+..++...|++++|++++.+......-.-+...+..++..+.+.|
T Consensus 77 la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 77 YVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp HHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC
Confidence 44333 322 678888877765 556666678889999999999999999987543211135667888999999999
Q ss_pred CHHHHHHHHHHHhhcCCCC-----ChhhHHHHHHH--HHhhc--ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 173 SMVHANLCLDLMDSRMVGK-----NEVTYTELLKL--AVWQK--NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+.+.|.+.++.|.+. .| +..+...+..+ ....| +...|..+|+++....+ +..+...++.++.+.|++
T Consensus 151 r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p-~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 151 NVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP-TWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp CHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-SHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC-CcccHHHHHHHHHHcCCH
Confidence 999999999999885 55 35666666666 33344 89999999999876554 433344455589999999
Q ss_pred HHHHHHHHHHHHhh--------ccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 244 KSAYETLQHMVALA--------MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
++|.+.++.+.+.- ..|+.+ .+.-.+|......|+ +|.++
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~------------------------------~~LaN~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKP------------------------------TFLANQITLALMQGL--DTEDL 275 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHH------------------------------HHHHHHHHHHHHTTC--TTHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCH------------------------------HHHHHHHHHHHHhCh--HHHHH
Confidence 99999999776531 124331 355444444444565 78888
Q ss_pred HHHHHHCCCCCCcc
Q 004269 316 MLQMQSLGLQPSSH 329 (764)
Q Consensus 316 ~~~m~~~g~~p~~~ 329 (764)
++++.+. .|+..
T Consensus 276 ~~qL~~~--~P~hp 287 (310)
T 3mv2_B 276 TNQLVKL--DHEHA 287 (310)
T ss_dssp HHHHHHT--TCCCH
T ss_pred HHHHHHh--CCCCh
Confidence 8888875 45543
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=2.5e-07 Score=90.05 Aligned_cols=187 Identities=11% Similarity=0.036 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCC---hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLG---ADDFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLL 127 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ 127 (764)
..+......+...|++++|+..|+.+.... +.+ ...+..+..++.+.|+++.|...|++..+..- +.....+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 344455667778888888888888888765 223 45677777788888888888888888887631 122456667
Q ss_pred HHHHHHc--------cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 128 MMQALCK--------GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 128 li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
+..++.. .|++++|+..|+++.+..+- +......+.. +...... -...+..+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 7777777 88888888888888765321 2222222111 0000000 00113445
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCC---CHhhHHHHHHHhhcc----------CCHHHHHHHHHHHHHhhccCcc
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFVWSFTRL----------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
...+...|++++|...|+.+++..+. ....+..+..+|... |++++|...|+++.+ ..|+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 55667777777777777777765443 344666666777655 788889888888887 44544
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=2.8e-07 Score=89.66 Aligned_cols=169 Identities=7% Similarity=-0.037 Sum_probs=102.2
Q ss_pred hhhccccCCchhhh--hhhHHHHHHHHHhhCCcchHHHHHHhccccCC--CCChhcHHHHHHHhhC--------CCChhH
Q 004269 38 RTLTTTMGLNEESI--SKATQMQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCAR--------SPDPLF 105 (764)
Q Consensus 38 r~~~~~~~~~p~~~--~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~--------~~~~~~ 105 (764)
..|...+...|... ...+..+...+...|++++|+..|+......+ +.....+..+..++.. .|+++.
T Consensus 36 ~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 36 EYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp HHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 55666666666532 34556667788999999999999999988642 1224456677777877 899999
Q ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHh
Q 004269 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 106 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
|...|+++.+.. +.+......+. .+..+... -...+..+...|.+.|++++|+..|+.+.
T Consensus 116 A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 116 AIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999874 22333332211 11111000 01123445556666677777777776666
Q ss_pred hcCCCC--ChhhHHHHHHHHHhh----------cChhHHHHHHHHHHhcCCCC
Q 004269 186 SRMVGK--NEVTYTELLKLAVWQ----------KNLSAVHEIWEDYIKHYSLS 226 (764)
Q Consensus 186 ~~g~~p--~~~t~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~ 226 (764)
+..+.. ....+..+..++... |++++|...++.+.+..|.+
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 543221 123445555555544 66677777777776655444
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.74 E-value=3.9e-07 Score=77.86 Aligned_cols=130 Identities=12% Similarity=-0.008 Sum_probs=112.3
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
.|..+...+...|++++|..+|+.+.+... .+..++..+...+...|+++.|...++.+.+..+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 567788899999999999999999987643 3667788888889999999999999999998878888899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004269 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 319 (764)
.|++++|.+.++.+.+. .|+. ...|..+...+...|++++|...|+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRS------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTC------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCC------------------------------hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999873 3332 147888999999999999999999998
Q ss_pred HHC
Q 004269 320 QSL 322 (764)
Q Consensus 320 ~~~ 322 (764)
...
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 864
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=1.1e-06 Score=83.17 Aligned_cols=191 Identities=11% Similarity=0.031 Sum_probs=108.4
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNS 163 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~ 163 (764)
+..+..+...+...|+++.|...|+++.+... .| ....+..+..+|.+.|++++|+..|+++.+..+-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 33444555566667777777777777776531 11 13456666777777777777777777776543222221 12333
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhH-------------
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL------------- 230 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 230 (764)
+..++.+.+.. .++ .|..+-..+...|+.++|...|+.+++..|.+..++
T Consensus 84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 33333321100 000 000000111123344444444444444333333222
Q ss_pred ----HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc
Q 004269 231 ----RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306 (764)
Q Consensus 231 ----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 306 (764)
..+...|.+.|+++.|...|+.+.+ ..|+.+.. ...+..+..++.+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~---------------------------~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQAT---------------------------RDALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHH---------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCcc---------------------------HHHHHHHHHHHHHc
Confidence 3456678899999999999999988 44443211 13688899999999
Q ss_pred CCHHHHHHHHHHHHHCC
Q 004269 307 QNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 307 ~~~~~a~~~~~~m~~~g 323 (764)
|++++|.+.++.+...+
T Consensus 198 g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 198 QMNAQAEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHHHHhhC
Confidence 99999999999988864
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.71 E-value=3.2e-07 Score=90.91 Aligned_cols=203 Identities=7% Similarity=-0.024 Sum_probs=148.2
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhcccc----CCCC-ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc---cc--cH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHA----HHSL-GADDFFHILNYCARSPDPLFVMETWRMMEEKEI---GL--NN 122 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~ 122 (764)
..+......+...|++++|+..|.+.... +.++ ...+|+.+..+|...|+++.|+..+++..+... .+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444566688899999999999887653 2112 246789999999999999999999998876421 11 14
Q ss_pred HHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh---
Q 004269 123 KCYLLMMQALCKG-GYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV--- 194 (764)
Q Consensus 123 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 194 (764)
.+++.+...|... |++++|+..|++..+...-..+ ..+++.+...+.+.|++++|+..|+......+.....
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 9999999999987653211111 3468889999999999999999999998865443221
Q ss_pred ---hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCH-----hhHHHHHHHhh--ccCCHHHHHHHHHHHHH
Q 004269 195 ---TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI-----FSLRKFVWSFT--RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 ---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 255 (764)
+|..+..++...|+++.|...++...+..+... ..+..++..+. ..+++++|+..|+.+.+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 567777788899999999999999987432221 23445566664 45678888888877654
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=3.3e-07 Score=102.34 Aligned_cols=158 Identities=14% Similarity=0.003 Sum_probs=137.2
Q ss_pred hCCCChhHHHHHHHHHH--------HcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 98 ARSPDPLFVMETWRMME--------EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
...|++++|.+.+++.. +.. +.+...+..+...|...|++++|+..|++..+.+ +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999998 432 4567788899999999999999999999997654 345678899999999
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH
Q 004269 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
+.|++++|+..|+...+..+. +...+..+..++...|++++ .+.|++..+..+.+..++..+..++.+.|++++|...
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999886433 66788889899999999999 9999999998889999999999999999999999999
Q ss_pred HHHHHHhhccCcc
Q 004269 250 LQHMVALAMMGKL 262 (764)
Q Consensus 250 ~~~~~~~~~~~~~ 262 (764)
|++..+ ..|+.
T Consensus 557 ~~~al~--l~P~~ 567 (681)
T 2pzi_A 557 LDEVPP--TSRHF 567 (681)
T ss_dssp HHTSCT--TSTTH
T ss_pred HHhhcc--cCccc
Confidence 999877 55554
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=9.2e-07 Score=87.19 Aligned_cols=169 Identities=6% Similarity=-0.121 Sum_probs=137.9
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
+.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|...|+..... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 5566677788889999999999999999997654 335668889999999999999999999998775 345443332
Q ss_pred HH-HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccccc
Q 004269 199 LL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 199 ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.. ..+...++.+.|.+.++...+..|.+...+..+..++...|++++|...|.++.+. .|+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~------------- 254 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAAD------------- 254 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGG-------------
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--cccccc-------------
Confidence 22 23667888899999999999989999999999999999999999999999999983 443210
Q ss_pred CCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...+..+...+...|+.++|...|++-..
T Consensus 255 ---------------~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 255 ---------------GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---------------GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 14889999999999999999998887653
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=3.5e-05 Score=81.88 Aligned_cols=125 Identities=10% Similarity=0.086 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
..|-..+....+.++.+.|..+|+.. ... ..+...|......-. ..++.+.|..+|+...+.. +-++..|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35666666666677788888888877 321 123344432221111 2336888888888777642 2234456667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
..+.|+.+.|..+|+++. .....|...+..=...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888852 2466777777766777888888887777664
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=2.5e-07 Score=103.33 Aligned_cols=174 Identities=7% Similarity=-0.116 Sum_probs=146.9
Q ss_pred HhhCCcchHHHHHHhcc--------ccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 63 LCRGERSRASHLLLNLG--------HAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 63 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
...|++++|++.|+... ... +.+...+..+..++...|+++.|.+.+++..+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999987 433 4556678888889999999999999999999875 4577899999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 214 (764)
.|++++|+..|++..+.+ +.+...|..+..+|.+.|++++ +..|+...+..+. +...|..+..++...|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999987654 3356688999999999999999 9999999886433 66788899999999999999999
Q ss_pred HHHHHHhcCCCCHhhHHHHHHHhhccCC
Q 004269 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.|++..+..+.+..++..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999988778888899999999877665
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=6.3e-07 Score=81.02 Aligned_cols=161 Identities=11% Similarity=-0.047 Sum_probs=98.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL-AVW 205 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 205 (764)
.+...+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|+...... |+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44455566666666666666654432 2234456666666666666666666666655432 222222211111 112
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.++...+...++...+..|.+...+..+..++...|++++|...|+++.+. .|+...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~--------------------- 143 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQD--------------------- 143 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTT---------------------
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccCh---------------------
Confidence 223344667777777767777888888888888888888888888888773 332100
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...+..+...+...|+.++|...|++...
T Consensus 144 -------~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 -------GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp -------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 03677788888888888888888877653
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=2.5e-05 Score=82.98 Aligned_cols=206 Identities=6% Similarity=-0.070 Sum_probs=112.5
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCC-hhHHHHHHHHHHHc-Cc-cccHHHHHHHHHHHH----ccCC
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD-PLFVMETWRMMEEK-EI-GLNNKCYLLMMQALC----KGGY 137 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~ 137 (764)
.++.+.+..+|+.....- |+...|...++...+.++ .+....+|+..+.. |. ..+...|...+..+. ..|+
T Consensus 27 ~~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 27 SKDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TTCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 377888888888877643 577777777766655442 34566777776654 32 335567777776543 2456
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
++.+.++|++... +++. .+..+-..|.. +... .+..+...++... .+.+..|..+++
T Consensus 105 ~~~vR~iy~rAL~---~P~~--~~~~lw~~Y~~-------------fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~ 161 (493)
T 2uy1_A 105 IEKIRNGYMRALQ---TPMG--SLSELWKDFEN-------------FELE---LNKITGKKIVGDT--LPIFQSSFQRYQ 161 (493)
T ss_dssp HHHHHHHHHHHHT---SCCT--THHHHHHHHHH-------------HHHH---HCHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---Chhh--hHHHHHHHHHH-------------HHHH---hccccHHHHHHHH--hHHHHHHHHHHH
Confidence 7778888887764 1211 12222222211 1110 0111111122111 123344444444
Q ss_pred HHHhcCC-CCHhhHHHHHHHhhcc--C-----CHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccc
Q 004269 218 DYIKHYS-LSIFSLRKFVWSFTRL--R-----DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 218 ~~~~~~~-~~~~~~~~li~~~~~~--g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
.+....+ .+...|...+..-... | ..+.+..+|+++.... |..
T Consensus 162 ~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~--------------------------- 212 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYA--------------------------- 212 (493)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTC---------------------------
T ss_pred HHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCC---------------------------
Confidence 4443211 1334555554443221 1 1345667888877632 322
Q ss_pred hhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004269 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 330 (764)
...|-..+.-+.+.|+.+.|..+|++.... |....
T Consensus 213 ---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 213 ---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 147888888888999999999999999986 55543
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=8.2e-07 Score=82.80 Aligned_cols=162 Identities=7% Similarity=-0.058 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH----------------HHHHhhCCCChhHHHHHHHHHHHcCc
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----------------ILNYCARSPDPLFVMETWRMMEEKEI 118 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~ 118 (764)
+......+...|++++|+..|+...... |-++..+.. +..++.+.|+++.|...+++.++.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3445666888999999999999988765 223444555 6667777778888888887777764
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HHHHHHHHHHHhhcCCCCChhhH
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
+.+...+..+...|...|++++|+..|++..+.+ +.+...|..+...|...|+ ...+...++.... +.|....+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 4466677777777777788888888877776543 2345566666666654443 3334444444322 22222333
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
.....++...|++++|...|++.++.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444455667777777777777654
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=9.4e-07 Score=88.22 Aligned_cols=204 Identities=12% Similarity=0.002 Sum_probs=112.3
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.|++++|.+++++..+... . .+ +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~--~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T--SF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C--CS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c--cc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4666777777776654321 1 00 11146677777766654 3456677888888777
Q ss_pred HHHHhhhc---CCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCC---CC--ChhhHHHHHHHHHhhcChhHHHHH
Q 004269 145 IYFLGERY---GIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV---GK--NEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 145 ~~~m~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
|.+..+.. +-++ -..+|+.+...|.+.|++++|+..|+.....-. .| -..++..+-..|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77664321 1000 123566677777777777777777766543210 01 12345555555555 666666666
Q ss_pred HHHHHhcCCC------CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccc
Q 004269 216 WEDYIKHYSL------SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 216 ~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
+++..+..+. ...+++.+..+|...|++++|+..|++..+........
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------- 191 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY-------------------------- 191 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------------
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh--------------------------
Confidence 6666542111 13456666666777777777777777666521111100
Q ss_pred hhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
......+..+..++...|++++|...|++..
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0001245555556666677777777666665
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.58 E-value=4.5e-07 Score=79.37 Aligned_cols=143 Identities=6% Similarity=-0.174 Sum_probs=86.8
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
.+...|+++.|++.+....... +.+...+-.+...|.+.|++++|++.|++..+.+ +-+...|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchH
Confidence 3444466666666666655442 2233445556666777777777777777665443 234556666777777777777
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHH-HHHHHhcCCCCHhhHHHHHHHhhccCC
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI-WEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
+|+..|+...+..+. +..++..+...+...|+.+++... ++...+-.|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777776664322 455666666667777776655443 466666666666666666666655553
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.57 E-value=1.5e-06 Score=81.00 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=33.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
+..+|.+.|++++|+..|+...+..+. +...+..+...+...|++++|...|++.++..|.+..++..+..+|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444444445555555555444443211 33344444444444444444444444444444444444444444443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.57 E-value=5.7e-07 Score=81.33 Aligned_cols=157 Identities=9% Similarity=-0.025 Sum_probs=75.1
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH-HHccCC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA-LCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~ 137 (764)
...+...|++++|+..|+...... |-+...+..+..++...|++++|...+++..+.. |+...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence 344555555555555555555433 2333445555555555555555555555554432 122222211111 111112
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
..+|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+..+.+ +...+..+...+...|+.++|...|
T Consensus 90 ~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 90 ESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp SCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 223455555554332 1234455555556666666666666666655543322 2345555555566666666666655
Q ss_pred HHHH
Q 004269 217 EDYI 220 (764)
Q Consensus 217 ~~~~ 220 (764)
+..+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=9.1e-06 Score=80.41 Aligned_cols=212 Identities=8% Similarity=-0.042 Sum_probs=144.9
Q ss_pred HHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH---HHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004269 75 LLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK---CYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (764)
+..+......|+..+...+...+.-.- + .++. .....+.. .+...+..+...|++++|..++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 344433334677777777777665331 1 1221 11122222 3334467788999999999999998764
Q ss_pred cCCCCChh----hhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHhhcChhHHHHHHHHHHhc
Q 004269 152 YGIYPILP----VYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 152 ~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
....|+.. .+..+...+...+++++|+..|+........ ++ ..+++.+...|...|++++|...++.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43334421 3445777778888999999999999874322 22 226888888999999999999999999852
Q ss_pred ---CCC----CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 223 ---YSL----SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 223 ---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
.+. ...++..+..+|.+.|++++|...+++..+.....+... ....+
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~ 238 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA--------------------------LIGQL 238 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT--------------------------THHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH--------------------------HHHHH
Confidence 211 234788999999999999999999999887432222100 00258
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHHH
Q 004269 296 FSDVIHACGRTQN-SGLAEQLMLQMQS 321 (764)
Q Consensus 296 ~~~li~~~~~~~~-~~~a~~~~~~m~~ 321 (764)
|..+..++.+.|+ +++|.+.|++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999988764
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.55 E-value=5e-07 Score=79.07 Aligned_cols=130 Identities=6% Similarity=-0.171 Sum_probs=106.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
|...+...|++++|+..++...... +.+...+-.+...|.+.|++++|++.|+...+..+. +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 4456677889999999999875432 223446677899999999999999999999886433 6788999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH-HHHHHHhhccCcc
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET-LQHMVALAMMGKL 262 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~ 262 (764)
++++|...|+...+..|.+..++..+..+|.+.|+.++|.+. +++..+ +.|+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCC
Confidence 999999999999998888999999999999999998776655 588877 66765
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=5.1e-06 Score=78.51 Aligned_cols=181 Identities=10% Similarity=-0.047 Sum_probs=124.6
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCC-C-ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHS-L-GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLM 128 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l 128 (764)
.+......+...|++++|+..|+.+...... + ....+..+..++.+.|+++.|+..|+++.+..- .+. ..+..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHHH
Confidence 3445567789999999999999999876521 1 135677888899999999999999999998742 122 244445
Q ss_pred HHHHHc------------------cCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 004269 129 MQALCK------------------GGYLEEASNLIYFLGERYGIYPIL-PVYNSFLGACAKLHSMVHANLCLDLMDSRMV 189 (764)
Q Consensus 129 i~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (764)
..++.. .|++++|...|+++.+.+ |+. ..+...... ..+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHH----------HHHHHHHH----
Confidence 555543 467777777777776543 222 222211110 00000000
Q ss_pred CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCH---hhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004269 190 GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI---FSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 256 (764)
.....+...+...|+++.|...|+.+++..|.+. .++..+..+|.+.|+.++|.+.++.+...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0112445668889999999999999998776665 56888999999999999999999988873
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.53 E-value=4.8e-06 Score=83.03 Aligned_cols=203 Identities=9% Similarity=-0.077 Sum_probs=140.4
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|++++|.+++++..+.. +.. .+...+++++|...|++. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 466778888888777642 111 122257888888887755 345677899999999
Q ss_pred HHHHHhhcCCC----C-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC----CC--CHhhHHHHHHHhhccCCHHHHHH
Q 004269 180 CLDLMDSRMVG----K-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY----SL--SIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 180 ~~~~m~~~g~~----p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
.|......... + -..+|..+...|...|++++|...+++..+.. .+ -..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99877653111 1 13477888888999999999999999887631 11 24578888889988 99999999
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC----C
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG----L 324 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~ 324 (764)
.|++..+........ .....+++.+...|.+.|++++|+..|++..... .
T Consensus 137 ~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 137 LYQQAAAVFENEERL--------------------------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCh--------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 999988732221110 0002578889999999999999999999887531 1
Q ss_pred CCC-cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 325 QPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 325 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
.++ ..++..+...+...|++++|...|++..
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 1144455555666788888888888877
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.53 E-value=1.1e-06 Score=86.50 Aligned_cols=167 Identities=7% Similarity=-0.142 Sum_probs=136.1
Q ss_pred CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004269 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 163 (764)
+.+...+..+...+...|+++.|.+.+++..+.. +.+...+..+...|...|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence 3455667777788889999999999999999875 457788899999999999999999999988654 344433322
Q ss_pred -HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC--HhhHHHHHHHhhcc
Q 004269 164 -FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRL 240 (764)
Q Consensus 164 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 240 (764)
....+.+.++.++|...|+......+ .+...+..+...+...|++++|.+.+..+.+..+.+ ...+..++.++...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22336677888889999999887643 367788888999999999999999999999876655 78999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVA 255 (764)
Q Consensus 241 g~~~~A~~~~~~~~~ 255 (764)
|+.+.|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999888664
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=3.1e-05 Score=75.84 Aligned_cols=152 Identities=6% Similarity=-0.032 Sum_probs=97.8
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHH--HHHHHHHHHHHhhccCcchhcccccccccccccCCCccCC
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK--SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
++++++..+++.+.+..+-+..+|+.-..++.+.|.++ ++++.++++.+......
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~----------------------- 180 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN----------------------- 180 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH-----------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH-----------------------
Confidence 45566666666666666667777777666666777666 78888888877332222
Q ss_pred ccccchhhhhhHHHHHHHHHccCC------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHHC
Q 004269 285 ALPVMKVLRWSFSDVIHACGRTQN------SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL-RNGMEVLKIMQQN 357 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 357 (764)
.+|+.-...+...+. ++++++.++++..... -|...|+.+-..+.+.|+. +.+..+...+.+.
T Consensus 181 ---------sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 181 ---------SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp ---------HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred ---------HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 366665555555555 7888888888887643 2566777777777676664 3355565555543
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004269 358 N--LKPQDSTIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 358 ~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 391 (764)
+ -..+...+..+.+.|.+.|+.++|.++++.+..
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3 122455666777777777777777777777664
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=3.1e-05 Score=75.87 Aligned_cols=152 Identities=10% Similarity=0.015 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh--HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC------H
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS--AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD------L 243 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 243 (764)
+++++++.+++.+.+..++ +..+|+.-.-.+...+.++ ++.+.++.+.+..+.|..+|+....++.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 3444444444444443222 3344444333344444444 45555555555445555555544444444444 5
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL-AEQLMLQMQSL 322 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~ 322 (764)
+++++.++.+.+ ..|+. ...|+-+-..+.+.|+... +..+..+..+.
T Consensus 203 ~eEl~~~~~aI~--~~p~n------------------------------~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQN------------------------------PSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHHHHHHHH--HCSSC------------------------------HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHHHHHHHHHHH--hCCCC------------------------------ccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 556666555555 33332 1355555555555554322 33344443332
Q ss_pred C--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 323 G--LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 323 g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
+ -..+...+..+...+.+.|+.++|.++++.+.+
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 1 012344555555666666666666666666654
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.49 E-value=6.3e-06 Score=76.92 Aligned_cols=178 Identities=10% Similarity=-0.079 Sum_probs=134.9
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC----CHHHHHHH
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG----YLEEASNL 144 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 144 (764)
.+|++.|++..+.| ++..+..+...+...++++.|.+.|++..+.| ++..+..|...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777654 56667777777777889999999999988876 56677777777877 6 89999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHh----hcChhHHHHH
Q 004269 145 IYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRMVG-KNEVTYTELLKLAVW----QKNLSAVHEI 215 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~~~~~~a~~~ 215 (764)
|++..+. -+...+..|...|.. .+++++|+..|+...+.|.. .+..++..|-..|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9888643 255677778888877 78999999999988876532 125677777777777 7789999999
Q ss_pred HHHHHhcCCCCHhhHHHHHHHhhcc-C-----CHHHHHHHHHHHHHhhc
Q 004269 216 WEDYIKHYSLSIFSLRKFVWSFTRL-R-----DLKSAYETLQHMVALAM 258 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~~ 258 (764)
|+...+. +.+..++..|..+|... | +.++|...|+...+.|.
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9988775 45566777788777643 3 89999999999988653
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.48 E-value=1.7e-06 Score=94.84 Aligned_cols=165 Identities=7% Similarity=-0.128 Sum_probs=119.1
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.|++++|++.|++..+.. +-+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477889999999887765 4456778888888888999999999999998875 45677888999999999999999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh---cChhHHHHHHHHHHh
Q 004269 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ---KNLSAVHEIWEDYIK 221 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~ 221 (764)
|++..+.. +.+...+..+...|.+.|++++|.+.|+...+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99887653 335668888999999999999999999998876432 567788888888888 999999999999988
Q ss_pred cCCCCHhhHHHHH
Q 004269 222 HYSLSIFSLRKFV 234 (764)
Q Consensus 222 ~~~~~~~~~~~li 234 (764)
..+.+...+..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 6665555554443
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.44 E-value=3.7e-06 Score=92.11 Aligned_cols=154 Identities=10% Similarity=-0.091 Sum_probs=119.8
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 368889999999988764 4467889999999999999999999999987643 3456788999999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc---CCHHHHHHHHHHHHHh
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---RDLKSAYETLQHMVAL 256 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 256 (764)
.|+...+.... +...+..+..++...|++++|.+.++...+..+.+...+..+..++... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999886432 5678889999999999999999999999998888899999999999999 9999999999999884
Q ss_pred h
Q 004269 257 A 257 (764)
Q Consensus 257 ~ 257 (764)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.42 E-value=1.6e-05 Score=74.15 Aligned_cols=175 Identities=10% Similarity=-0.009 Sum_probs=132.0
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC----ChhHHHHHHHHHH
Q 004269 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR----CFKSASALVSMMV 571 (764)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~ 571 (764)
|.+.|++.-...+...+..+...|...+++++|+..|++..+.| +...+..+-..|.. + ++++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44445444334577788888888888999999999999998876 55666666666766 6 8999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004269 572 RDGFYPQTMTYTALIKILLD----YGDFDEALNLLDLVSLEGIP-HDVLLYNTILKKACE----KGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 572 ~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 642 (764)
+.| +...+..|...|.. .+++++|.++|++..+.|.. .++..+..|...|.. .++.++|..+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 865 56677778888877 78999999999998865421 026788888888888 8899999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHhh
Q 004269 643 NKVQPDPSTCHFVFSGYVNC-G-----FHNSAMEALQVLSMRM 679 (764)
Q Consensus 643 ~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 679 (764)
. ..+...+..|-..|... | ++++|.+.++.--..+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5 23444555566666543 3 8999999998665544
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.37 E-value=4.9e-05 Score=75.07 Aligned_cols=173 Identities=8% Similarity=-0.022 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC---CC--
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG---KN-- 192 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~-- 192 (764)
...+...+..+...|++++|.+.++...+.....++. ..+..+...+...|++++|+..|+........ +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3455567788899999999999998776533221111 22444666678889999999999988753221 11
Q ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHh---cCCCC----HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhc
Q 004269 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (764)
..+++.+...|...|++++|...+++..+ ..+.+ ..++..+..+|...|++++|...+++..+.....+...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~- 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA- 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH-
Confidence 34788888899999999999999999884 23332 25889999999999999999999999887432211100
Q ss_pred ccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 004269 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA-EQLMLQMQ 320 (764)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~ 320 (764)
....+|..+...|...|++++| ...+++..
T Consensus 234 -------------------------~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 -------------------------LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -------------------------SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0025888899999999999999 77777765
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.34 E-value=4.9e-05 Score=75.08 Aligned_cols=163 Identities=7% Similarity=-0.064 Sum_probs=117.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhhCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 004269 514 TVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAA----TYNIMIDCCSIIRCFKSASALVSMMVRDGFY-PQ----TMTYT 583 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~ 583 (764)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++.+.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788889999999998887643 122321 2334566667778999999999988874222 22 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSL----E-GIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPD-PSTC 652 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~ 652 (764)
.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|...+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999998873 1 22222 347888999999999999999999887752 32333 4566
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHH
Q 004269 653 HFVFSGYVNCG-FHNSAMEALQVLS 676 (764)
Q Consensus 653 ~~ll~~~~~~g-~~~~a~~~~~~~~ 676 (764)
..+-.+|.+.| ++++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66667889999 4699999888754
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.33 E-value=1.9e-05 Score=73.68 Aligned_cols=143 Identities=8% Similarity=-0.036 Sum_probs=90.9
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+...|++++|+..|+.. +.|+...+..+...+...|++++|...++...+..+.+..++..+..+|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334445555566666666666544 2345556666666666666666666666666666666677777788888888
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
|++++|...|++..+. .|+...... . .. ...........|..+..++...|++++|...|++..
T Consensus 85 ~~~~~A~~~~~~al~~--~~~~~~~~~-----~--~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQ--LRGNQLIDY-----K--IL-------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHT--TTTCSEEEC-----G--GG-------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCccHHHH-----H--Hh-------ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888888773 232200000 0 00 000000002578889999999999999999999999
Q ss_pred HCC
Q 004269 321 SLG 323 (764)
Q Consensus 321 ~~g 323 (764)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 753
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.29 E-value=4.7e-05 Score=70.98 Aligned_cols=131 Identities=10% Similarity=0.065 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|+...+.. +.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444556666777777777776653 4566777777777777777777777777777653 2356667777778888
Q ss_pred cCCHHHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004269 592 YGDFDEALNLLDLVSLEG--------------IPH-DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~--------------~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
.|++++|.+.|++..+.. ..| ....+..+...|.+.|++++|.+.+++..+ ..|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 888888888888777532 111 226777788888888888888888888885 44554
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.24 E-value=0.00023 Score=70.46 Aligned_cols=184 Identities=8% Similarity=-0.037 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh-c-ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHH-------
Q 004269 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ-K-NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK------- 244 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------- 244 (764)
+++++..++.+....++ +..+|+.--..+... + +++++.++++.+.+..+.+..+|+.-..++.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 44555555554443222 333343333333333 3 4455555555555555555555555555554444444
Q ss_pred -HHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC-------HHHHHHHH
Q 004269 245 -SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN-------SGLAEQLM 316 (764)
Q Consensus 245 -~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~ 316 (764)
++++.++++.+...... .+|+.....+.+.++ ++++++.+
T Consensus 184 ~eELe~~~k~I~~dp~N~--------------------------------SAW~~R~~lL~~l~~~~~~~~~~~eELe~~ 231 (349)
T 3q7a_A 184 GSELDWCNEMLRVDGRNN--------------------------------SAWGWRWYLRVSRPGAETSSRSLQDELIYI 231 (349)
T ss_dssp HHHHHHHHHHHHHCTTCH--------------------------------HHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCH--------------------------------HHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 88899999988433322 488887777777775 68899999
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC-----CCCCHHHHHHHHH
Q 004269 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGL--------------------RNGMEVLKIMQQNN-----LKPQDSTIATLSV 371 (764)
Q Consensus 317 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~~~li~ 371 (764)
++...... -|...|+-+-..+.+.|.. ....+...++...+ -.+.+.....|++
T Consensus 232 ~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 232 LKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 88887542 2555666655555555543 11222222221111 0134444556666
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 004269 372 ECSKALELDLAEALLDQISR 391 (764)
Q Consensus 372 ~~~~~g~~~~a~~~~~~~~~ 391 (764)
.|...|+.++|.++++.+.+
T Consensus 311 ~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHh
Confidence 66666666666666666653
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.22 E-value=9.8e-06 Score=70.44 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=59.8
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
.+..+...+.+.|++++|+..|+......+. +...|..+-.++...|++++|...|++..+..|.++..|..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4555555566666666666666666554322 445555565666666666666666666666566666666677777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 004269 240 LRDLKSAYETLQHMVA 255 (764)
Q Consensus 240 ~g~~~~A~~~~~~~~~ 255 (764)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777766
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.21 E-value=8.1e-05 Score=73.45 Aligned_cols=166 Identities=7% Similarity=-0.066 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCCh-----hcHHHHHHHhhCCCChhHHHHHHHHHHHcCc---ccc--HHH
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGA-----DDFFHILNYCARSPDPLFVMETWRMMEEKEI---GLN--NKC 124 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~ 124 (764)
+...+..+...|++++|++.+..........+. ..+..+...+...|+++.|.+.+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455666777777777777665544311110 1123344455566677777777776664311 111 336
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhh---hcCCCC--ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC----CCC-Chh
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGE---RYGIYP--ILPVYNSFLGACAKLHSMVHANLCLDLMDSRM----VGK-NEV 194 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~ 194 (764)
|+.+...|...|++++|...|++..+ ..+..+ ...+|+.+...|.+.|++++|+..++...+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 66677777777777777777776652 211111 11366667777777777777777776654321 111 134
Q ss_pred hHHHHHHHHHhhcChhHH-HHHHHHHH
Q 004269 195 TYTELLKLAVWQKNLSAV-HEIWEDYI 220 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a-~~~~~~~~ 220 (764)
+|..+...+...|+.++| ...++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 556666666667777666 55555543
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.20 E-value=4.3e-05 Score=67.77 Aligned_cols=129 Identities=12% Similarity=-0.135 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|+...+... .+..++..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 44555555666666666666666655432 22344566666666666666666666666655422 2445566666666
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHH--HHHHhhccCCHHHHHHHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRK--FVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...|++++|...++...+..+.+...+.. +...+...|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 66677777777766666655555555433 33336677888888888877654
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.20 E-value=3.3e-05 Score=64.40 Aligned_cols=110 Identities=12% Similarity=-0.065 Sum_probs=51.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|.++|+++.+.. +.+...+..+...+.+.|++++|...|+.+.+... .+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 44444444555555555555555544321 12333444455555555555555555555444321 1334444444555
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
...|++++|...++.+.+..+.+...+..+..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 555555555555555544444444444443333
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.20 E-value=1.5e-05 Score=70.74 Aligned_cols=127 Identities=9% Similarity=-0.159 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
.+..+...+...|++++|+..|+...... +.+...+..+..++...|+++.|.+.+++..+.. +.+...+..+...|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555666677777777766666544 3345555556666666666666666666666553 334555666666666
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhh--HHHHHHHhccCCHHHHHHHHHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVY--NSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m 184 (764)
..|++++|...|++..+..+ .+...+ -.+...+.+.|++++|+..+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666554321 122222 22222244555555555555543
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.20 E-value=2.9e-05 Score=65.23 Aligned_cols=107 Identities=13% Similarity=-0.107 Sum_probs=59.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+......|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|+...+..+. +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 44455555666666666666666554432 234445555666666666666666666665554222 344555555556
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
...|++++|.+.|+..++..|.+..++..|
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 666666666666666555555555544444
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.19 E-value=1.6e-05 Score=69.17 Aligned_cols=109 Identities=7% Similarity=-0.059 Sum_probs=74.1
Q ss_pred hccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcc
Q 004269 40 LTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG 119 (764)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 119 (764)
+...++..|+... .+..+...+...|++++|+..|+.....+ |.++..|..+..++...|++++|.+.|++..+.. +
T Consensus 25 l~~al~l~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P 101 (151)
T 3gyz_A 25 LKDINAIPDDMMD-DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-K 101 (151)
T ss_dssp TGGGCCSCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred HHHHhCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-C
Confidence 3344555566433 33444566777778888888887777665 4456667777777777777777777777777764 4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004269 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (764)
.++..|..+..+|...|++++|+..|++..+.
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777643
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.18 E-value=2.3e-05 Score=65.41 Aligned_cols=94 Identities=15% Similarity=-0.006 Sum_probs=44.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+...|+++.|.++++++.+.. +.+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHH
Confidence 4444444444455555555555444432 2234444445555555555555555555544321 223334445555555
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
..|++++|...|+.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555544
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00041 Score=68.66 Aligned_cols=222 Identities=9% Similarity=-0.013 Sum_probs=140.0
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc-C-CHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-H-SMVH 176 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 176 (764)
.+..++|+++++.++..+ +-+..+|+.--..+...| .+++++++++.+...+ +-+..+|+.--..+.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344456667777666654 334455555555555556 4777777777776433 33444555555555444 4 6677
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh--------HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC------
Q 004269 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS--------AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD------ 242 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 242 (764)
++++++.+.+...+ +..+|+.-.-.+...+.++ ++.+.++.+.+..+.|..+|+....++.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 77777777665433 5556655544444444444 78888888888888888888888888887776
Q ss_pred -HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCH------------
Q 004269 243 -LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS------------ 309 (764)
Q Consensus 243 -~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~------------ 309 (764)
++++++.+++..+ ..|+. ...|+-+-..+.+.|+.
T Consensus 223 ~~~eELe~~~~aI~--~~P~n------------------------------~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 223 SLQDELIYILKSIH--LIPHN------------------------------VSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHhcCCCcccccccccccc
Confidence 6888888888887 55554 24777666666555543
Q ss_pred --------HHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 310 --------GLAEQLMLQMQSLG-----LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 310 --------~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
....++..++...+ -.++...+..+...|...|+.++|.++++.+.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22333333333221 1346667888888999999999999999998643
No 132
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.17 E-value=0.00074 Score=66.50 Aligned_cols=196 Identities=9% Similarity=-0.107 Sum_probs=144.5
Q ss_pred HHHHHhhCCcc-hHHHHHHhccccCCCCChh-cHHHHHHHhhCCCC----------hhHHHHHHHHHHHcCccccHHHHH
Q 004269 59 IVDALCRGERS-RASHLLLNLGHAHHSLGAD-DFFHILNYCARSPD----------PLFVMETWRMMEEKEIGLNNKCYL 126 (764)
Q Consensus 59 i~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~ 126 (764)
+....+.|.+. +|+++++.+...+ |+.. .++.--.++...+. ++.++.+++.+...+ +-+..+|+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~ 112 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 112 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44455667665 8999999999876 4433 33332222222222 567888999988875 55777888
Q ss_pred HHHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC-HHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 127 LMMQALCKGG--YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 127 ~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.-.-.+...| .+++++.+++.+.+.+ +-|..+|+.-.-++...|. ++++++.++.+.+..+. |..+|+.....+
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 7777777777 4899999999998765 4466677777777777787 58999999999987655 777887766665
Q ss_pred Hhh--------------cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhc
Q 004269 204 VWQ--------------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-----------RDLKSAYETLQHMVALAM 258 (764)
Q Consensus 204 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~ 258 (764)
... +.++++.+.+...+...|.|..+|+-+-..+.+. +.++++++.++++.+ +
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~ 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--L 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--h
Confidence 554 4578888999999888999999998776666655 467889999999988 6
Q ss_pred cCcc
Q 004269 259 MGKL 262 (764)
Q Consensus 259 ~~~~ 262 (764)
.|+.
T Consensus 268 ~pd~ 271 (331)
T 3dss_A 268 EPEN 271 (331)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 6765
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.17 E-value=3e-05 Score=75.98 Aligned_cols=96 Identities=10% Similarity=-0.091 Sum_probs=61.0
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..+..+...+.+.|++++|+..|+......+. +...|..+..++...|++++|...++...+..+.+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555666666666666665554221 44555555556666666666666666666655666667777777777
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004269 239 RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 239 ~~g~~~~A~~~~~~~~~ 255 (764)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 78888888888877776
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.16 E-value=3.7e-05 Score=64.55 Aligned_cols=101 Identities=10% Similarity=-0.044 Sum_probs=91.2
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..+......|.+.|++++|++.|+...+..+ .+..+|..+..++...|++++|...++..++..+.+..+|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4577788899999999999999999988643 367888899999999999999999999999988899999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhccCcc
Q 004269 239 RLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
..|++++|.+.|++..+ +.|+.
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HCCCHHHHHHHHHHHHH--HCcCC
Confidence 99999999999999998 66765
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.14 E-value=3.8e-05 Score=70.88 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=73.2
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhc----CCC-CChhhHHHHHHHHHhhcChhHHHHHHHHHHhc---CCCC----H
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSR----MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH---YSLS----I 227 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~ 227 (764)
++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|.+.+++..+. .+.+ .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4444444444445555554444443331 111 12223444444555555555555555555432 2211 2
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 307 (764)
.++..+...+...|++++|...+++..+......... ....++..+...+...|
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV--------------------------AIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------------------------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH--------------------------HHHHHHHHHHHHHHHCc
Confidence 3466667777777888888888877765322211100 00135677778888888
Q ss_pred CHHHHHHHHHHHHH
Q 004269 308 NSGLAEQLMLQMQS 321 (764)
Q Consensus 308 ~~~~a~~~~~~m~~ 321 (764)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877654
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.14 E-value=1.5e-05 Score=78.15 Aligned_cols=192 Identities=8% Similarity=-0.072 Sum_probs=134.1
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
.+......+...|++++|+..|++..... +.+...|..+..++.+.|+++.|.+.+++..+.+ +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455677889999999999999998875 4467788889999999999999999999999875 456788999999999
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
..|++++|...|++..+..+- +...+...+....+. ..+.. +..........+......+ ..+ ..|+.++|.
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKE--QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 999999999999987654311 111222233322221 11111 1222223334444443333 323 378899999
Q ss_pred HHHHHHHhcCCCCHhhHHHHHHHhhcc-CCHHHHHHHHHHHHH
Q 004269 214 EIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVA 255 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 255 (764)
+.++...+..+.+......+...+.+. +..++|.++|..+.+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 988888877666666666666666665 678889999988765
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.13 E-value=2.1e-05 Score=70.94 Aligned_cols=123 Identities=8% Similarity=-0.033 Sum_probs=91.1
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH-HHccCCH--
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA-LCKGGYL-- 138 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~-- 138 (764)
+...|++++|+..|+...... +.+...+..+..++...|+++.|...+++..+.. +.+...+..+... |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345778888888888877665 4566778888888888889999999988888764 3466677777777 7788887
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
++|...|++..+.. +.+...+..+...|...|++++|...|+...+..
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888887543 2345677778888888888888888888887753
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=4.3e-05 Score=64.71 Aligned_cols=96 Identities=11% Similarity=-0.103 Sum_probs=46.9
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 167 (764)
..+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHH
Confidence 334444555555555555555555555442 2244445555555555555555555555544321 1233344444555
Q ss_pred HhccCCHHHHHHHHHHHhh
Q 004269 168 CAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~ 186 (764)
+.+.|++++|...|+...+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555444
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.12 E-value=3.6e-05 Score=64.85 Aligned_cols=118 Identities=9% Similarity=-0.131 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+..+ .+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 3344455555555555555555555554322 22344455555555555555555555555554321 13444555555
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...|++++|...++...+..+.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555566666665555555444455555555555544443
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.12 E-value=2.1e-05 Score=70.84 Aligned_cols=119 Identities=9% Similarity=-0.004 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH-hhccCCH--HHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDL--KSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~ 247 (764)
.|++++|...|+......+ .+...+..+...+...|+++.|...++...+..+.+...+..+..+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4455555555554444321 1334444455555555555555555555554444455555555555 5555665 6666
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..|+...+ ..|+. ...|..+...+...|++++|...|++..+.
T Consensus 102 ~~~~~al~--~~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALA--LDSNE------------------------------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666655 23332 135555666666666666666666666554
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.12 E-value=3e-05 Score=67.41 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=80.9
Q ss_pred hhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc
Q 004269 39 TLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118 (764)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 118 (764)
.|...++..|+. ...+......+...|++++|+..|+.....+ +.+...+..+..++...|+++.|...|++..+.+
T Consensus 9 ~~~~al~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSDT-LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344455666664 3334445667778888888888888887765 4566677777778888888888888888888764
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 152 (764)
+.+...+..+..+|...|++++|...|+...+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4466777778888888888888888888776543
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.11 E-value=2.9e-05 Score=71.72 Aligned_cols=125 Identities=10% Similarity=-0.001 Sum_probs=69.8
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.|++++|.+.++.+.........++..+...+...|++++|...+++..+.....+..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------- 62 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---------------------- 62 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH----------------------
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc----------------------
Confidence 4444555443333322222334555666666667777777777777666522111110
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----GLQP--SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
.....+++.+...+...|++++|...+++.... +-.| ....+..+...+...|++++|...+++..+
T Consensus 63 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 63 ----TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 000247777788888888888888888776542 1111 123455566666777777777777776654
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.09 E-value=5.7e-05 Score=63.91 Aligned_cols=98 Identities=11% Similarity=-0.067 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..|+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-------------- 78 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-------------- 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------------
Confidence 34455555555555555555555555554321 12334445555555555555555555555444
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+.+...+..+..++...|++++|.+.|++..+
T Consensus 79 ---------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 79 ---------------------LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ---------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444555555555556666666666665554
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.08 E-value=2.9e-05 Score=67.46 Aligned_cols=97 Identities=6% Similarity=-0.163 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...+..+...+...|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+......+. +...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3344455555555666666666665554332 223445555555555666666666666555554221 3445555555
Q ss_pred HHHhhcChhHHHHHHHHHHh
Q 004269 202 LAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~ 221 (764)
++...|++++|...|+...+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55556666666665555554
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.07 E-value=5.1e-05 Score=63.86 Aligned_cols=103 Identities=9% Similarity=-0.109 Sum_probs=89.8
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
+...+..+...+...|++++|...|+....... .+...+..+...+...|++++|...++...+..+.+...+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455778888899999999999999999887642 3677888888899999999999999999998888889999999999
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 237 FTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+...|+++.|...|++..+ ..|+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~--~~p~~ 113 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE--LDPDN 113 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTC
T ss_pred HHHhCCHHHHHHHHHHHHh--cCccc
Confidence 9999999999999999988 34443
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.06 E-value=4.1e-05 Score=65.98 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=81.1
Q ss_pred hccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcc
Q 004269 40 LTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG 119 (764)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 119 (764)
|...+...|+... .+......+...|++++|+..|+.....+ +.+...+..+..++...|+++.|...|++..+.+ +
T Consensus 7 l~~al~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 83 (142)
T 2xcb_A 7 LAMLRGLSEDTLE-QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-I 83 (142)
T ss_dssp --CCTTCCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444566666433 34445667788889999999998888765 4566677777888888888888888888888875 4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004269 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (764)
.++..+..+..+|...|++++|...|+...+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56677778888888888888888888887654
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.04 E-value=6.2e-05 Score=71.91 Aligned_cols=189 Identities=6% Similarity=-0.144 Sum_probs=132.8
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHH-------HHHhhCCCChhHHHHHHHHHHHcCcccc---------------
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHI-------LNYCARSPDPLFVMETWRMMEEKEIGLN--------------- 121 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------- 121 (764)
..+++..|.+.|.++.... +-....|.-+ ..++.+.+....+...+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999999876 3334455544 2222222223333333333332 2221
Q ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC--C
Q 004269 122 -------NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK--N 192 (764)
Q Consensus 122 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~ 192 (764)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .| .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 223445677888999999999999988643 3444466666778899999999999998554421 11 1
Q ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC-C--CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCc
Q 004269 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS-L--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (764)
...+..+-.++...|++++|.+.|++...+.. | ..........++.+.|+.++|..+|+++.. ..|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 23677788889999999999999999987642 4 345778888899999999999999999998 4444
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.03 E-value=6.4e-05 Score=75.74 Aligned_cols=113 Identities=12% Similarity=-0.038 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...|.+.|++++|+..|++..+.. |+...+ ..+.+..+-. ....+|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~-----------~~~~~~~~~~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESSF-----------SNEEAQKAQA--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCC-----------CSHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hccccC-----------ChHHHHHHHH--------HHHHHHHHHH
Confidence 34566666666666777777777776665432 221000 0000000000 0124455555
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.++...|++++|...++..++..+.+..++..+..+|...|++++|...|++..+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5556666666666666666655555666666666666666666666666666665
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.00 E-value=0.0001 Score=74.28 Aligned_cols=120 Identities=6% Similarity=-0.254 Sum_probs=73.1
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc--------------HHHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN--------------NKCYLLMMQ 130 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~ 130 (764)
.+++++|+..|+...... +-+...+..+...+.+.|+++.|...|++.++..-... ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 355667777666654432 23456788888899999999999999999998742111 345555555
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
.|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+...+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5555566666666555554432 223444555555555555555555555555443
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.97 E-value=7.8e-05 Score=71.22 Aligned_cols=189 Identities=10% Similarity=-0.122 Sum_probs=115.1
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHH-------HHHHHccCCHHHHHHHHHHHhhhcCCCCChh------------
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLM-------MQALCKGGYLEEASNLIYFLGERYGIYPILP------------ 159 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------------ 159 (764)
..+++..|.+.|.+..+.+ +-....|..+ ...+.+.++..++...+..-. ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCcccc
Confidence 5688888999999888875 4456677766 345555444555544444332 2333221
Q ss_pred ----------hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC--H
Q 004269 160 ----------VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--I 227 (764)
Q Consensus 160 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 227 (764)
.+-.+...+...|++++|.++|+.+...+ |+......+-..+.+.++++.|+..++...+...|. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 12235566777888888888888777643 433344444446677788888888776443322121 2
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 307 (764)
.++..+..++...|++++|+..|++.......|... ...+.....++.+.|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~-----------------------------~da~~~~glaL~~lG 222 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA-----------------------------RAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH-----------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc-----------------------------HHHHHHHHHHHHHcC
Confidence 356667777777777777777777766422113210 124555666677777
Q ss_pred CHHHHHHHHHHHHHC
Q 004269 308 NSGLAEQLMLQMQSL 322 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~ 322 (764)
+.++|..+|+++...
T Consensus 223 r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 223 NESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 777777777777764
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.94 E-value=1.6e-05 Score=73.32 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+..+..++...|++++|...++...+..+.+..++..+..+|...|++++|...|++..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45555566666667777777777776666666667777777777777777777777777766
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.94 E-value=2.2e-05 Score=72.37 Aligned_cols=154 Identities=8% Similarity=-0.128 Sum_probs=91.2
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC--------------hhhhHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI--------------LPVYNSFL 165 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--------------~~~~~~li 165 (764)
.|+++.+.+.|+.-.... ......+..+...+...|++++|...|++..+..+-.|+ ...|..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 344444444444222211 123345556666677777777777777766543221121 15677777
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.+|.+.|++++|+..++...+... .+...+..+..++...|+++.|...|+...+..+.+..++..+..++...++.++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887776532 2556777777778888888888888888877777777777777777777777666
Q ss_pred HH-HHHHHHHH
Q 004269 246 AY-ETLQHMVA 255 (764)
Q Consensus 246 A~-~~~~~~~~ 255 (764)
+. ..|..+..
T Consensus 175 ~~~~~~~~~f~ 185 (198)
T 2fbn_A 175 KDKLTFGGMFD 185 (198)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
Confidence 65 44555543
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.92 E-value=0.0003 Score=57.70 Aligned_cols=104 Identities=11% Similarity=-0.123 Sum_probs=47.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+..+ .+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34444444445555555555555443321 12333444444445555555555555555444321 1333444444445
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
...|++++|.+.++...+..+.+...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 555555555555555444333333333
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.91 E-value=0.00017 Score=58.63 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=66.1
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|...|++..+..+-..+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34456666666677777777777777776654 33556666677777777777777777777654321100355666677
Q ss_pred HHHhcc-CCHHHHHHHHHHHhhcC
Q 004269 166 GACAKL-HSMVHANLCLDLMDSRM 188 (764)
Q Consensus 166 ~~~~~~-g~~~~A~~~~~~m~~~g 188 (764)
..+.+. |++++|.+.|+......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776653
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00019 Score=60.09 Aligned_cols=94 Identities=15% Similarity=-0.066 Sum_probs=42.8
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+.+.|+++.|.+.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3344444444455555555555544442 2234444444445555555555555554444322 122334444444444
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
..|++++|...|+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 44555555444444443
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.89 E-value=0.00017 Score=58.56 Aligned_cols=96 Identities=4% Similarity=-0.240 Sum_probs=59.4
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHHH
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWS 236 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~ 236 (764)
..+..+...+.+.|++++|...|+...+... .+...+..+...+...|++++|...++...+..+. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3455555556666666666666666555422 23445555555666666666666666666665555 56666667777
Q ss_pred hhcc-CCHHHHHHHHHHHHH
Q 004269 237 FTRL-RDLKSAYETLQHMVA 255 (764)
Q Consensus 237 ~~~~-g~~~~A~~~~~~~~~ 255 (764)
+... |++++|.+.|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 7777 777777777777665
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.87 E-value=0.00012 Score=64.77 Aligned_cols=99 Identities=13% Similarity=-0.098 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|++..... +.+...|..+..++...|+++.|...+++.++.+ +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445556667778888888888888887765 3466677778888888888888888888888775 4457778888888
Q ss_pred HHccCCHHHHHHHHHHHhhhc
Q 004269 132 LCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~ 152 (764)
|...|++++|...|++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888876554
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.87 E-value=0.00015 Score=62.44 Aligned_cols=93 Identities=6% Similarity=-0.127 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004269 91 FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 170 (764)
..+...+.+.|+++.|...|+...+.+ +.+...|..+..+|...|++++|+..|++..... +.+...+..+..+|..
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH
Confidence 333444444555555555555555443 2344444455555555555555555555544322 1223344444455555
Q ss_pred cCCHHHHHHHHHHHhh
Q 004269 171 LHSMVHANLCLDLMDS 186 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~ 186 (764)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554443
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.86 E-value=0.0063 Score=59.88 Aligned_cols=219 Identities=7% Similarity=-0.123 Sum_probs=151.3
Q ss_pred CCCh-hHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC----------HHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 100 SPDP-LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY----------LEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 100 ~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
.|.+ ++|+++.+.++..+ +-+..+|+.--..+...|. +++++.+++.+...+ +-+..+|+.-...+
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL 118 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 118 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3444 47899999998875 3345556544333333332 678999999987654 34566777766666
Q ss_pred hccC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC-hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc-----
Q 004269 169 AKLH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL----- 240 (764)
Q Consensus 169 ~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 240 (764)
.+.+ ++++++.+++.+.+..+. |..+|+.-.-.+...|. ++++.+.++.+++..+.|..+|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 6667 489999999999987544 77788877777777787 58999999999998999999998887776655
Q ss_pred ---------CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc-----
Q 004269 241 ---------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----- 306 (764)
Q Consensus 241 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 306 (764)
+.++++++.+..... ..|++ ..+|+-+-..+.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~--~~P~d------------------------------~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF--TDPND------------------------------QSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHHSSSCGGG
T ss_pred cccccccchHHHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHhccCccc
Confidence 457889999999887 56665 24676554444444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-----HHhcCChhHHHHHHHHHHHC
Q 004269 307 ------QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA-----IVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 307 ------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~ 357 (764)
+.++++++.++++.+. .||. .|..+-.+ ....+..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467888888888874 5665 33322111 11345556666677766654
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00023 Score=59.64 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=26.8
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...+...|++++|...|+..++..+.+...+..+..+|.+.|++++|...|++..+
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444555555555555555555555444
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00024 Score=59.64 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccc
Q 004269 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (764)
.++..+...+.+.|++++|...|++.++..|.+..+|..+..+|...|++++|+..|++..+. .|+...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~--------- 77 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRA--------- 77 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--Ccccch---------
Confidence 345566677778888888888888887777778888889999999999999999999998873 332200
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 330 (764)
.......+|..+..++...|++++|++.|++.... .||...
T Consensus 78 --------------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 78 --------------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred --------------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 00001136777888888899999999999887764 455443
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.0007 Score=71.01 Aligned_cols=198 Identities=8% Similarity=-0.159 Sum_probs=144.4
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCCh----------------hcHHHHHHHhhCCCChhHHHHHHHHHHHcC-ccc
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA----------------DDFFHILNYCARSPDPLFVMETWRMMEEKE-IGL 120 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~ 120 (764)
....+...|++++|++.|..+.+....... ..+..+...|...|+++.|.+.+..+.+.- -.+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 466788999999999999998765422111 126778899999999999999999877631 111
Q ss_pred cH----HHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc--CC-
Q 004269 121 NN----KCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MV- 189 (764)
Q Consensus 121 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~- 189 (764)
+. .+.+.+-..+...|+.+.|..+++..... .+..+ ...++..|...|...|++++|..+++..... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 23444445556778999999998876432 11111 2346788999999999999999999887653 11
Q ss_pred -CC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhc---CCCC----HhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 190 -GK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH---YSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 190 -~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+ ...++..+...|...|++++|..+++..... ...+ ...+..+...+...|+++.|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2347888889999999999999999988752 2222 34677778888999999999999888876
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.83 E-value=0.00067 Score=55.49 Aligned_cols=93 Identities=11% Similarity=-0.083 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 547 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444455555555554444432 1234444445555555555555555555554321 2234455555555555
Q ss_pred cCCHHHHHHHHHHHH
Q 004269 627 KGRIDVIEFIIEQMH 641 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~ 641 (764)
.|++++|.+.+++..
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 555555555555554
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00054 Score=71.87 Aligned_cols=200 Identities=9% Similarity=-0.080 Sum_probs=110.4
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCCh---------------hhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCCh
Q 004269 130 QALCKGGYLEEASNLIYFLGERYGIYPIL---------------PVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNE 193 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 193 (764)
..+.+.|++++|++.|..+.+...-..+. ..+..|...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34556667777777666665432211111 124556667777777777777776654421 11111
Q ss_pred h----hHHHHHHHHHhhcChhHHHHHHHHHHhc------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcch
Q 004269 194 V----TYTELLKLAVWQKNLSAVHEIWEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263 (764)
Q Consensus 194 ~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 263 (764)
. +.+.+-..+...|+.+.+..++...... ...-..++..+...|...|++++|..+++.+...-...++
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~- 170 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD- 170 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-
Confidence 1 1111222223456677777776666531 1122446677778888888888888888877653222221
Q ss_pred hcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CC-C-C--cccHHHHHHH
Q 004269 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQ-P-S--SHTYDGFIRA 337 (764)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~-p-~--~~~~~~ll~~ 337 (764)
+.....+|..++..|...|++++|..++++..... +. | . ...+..+...
T Consensus 171 -------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 171 -------------------------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp -------------------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -------------------------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 00112577788888888888888888887765421 11 1 1 1233344444
Q ss_pred HHhcCChhHHHHHHHHHH
Q 004269 338 IVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~ 355 (764)
+...+++++|...|.+..
T Consensus 226 ~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TTSSSCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 556667777766665554
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.78 E-value=0.00019 Score=62.96 Aligned_cols=143 Identities=13% Similarity=-0.083 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CChhhHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNEVTYT 197 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~ 197 (764)
.++..+...|...|++++|...+++..+...-.++. .++..+...+...|++++|...++...+.... ++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---- 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc----
Confidence 456666667777777777777777664321111111 24555555566666666666666554432100 000
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccccc
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.....++..+..++...|++++|...+++..+........
T Consensus 86 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------- 125 (164)
T 3ro3_A 86 --------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-------------- 125 (164)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch--------------
Confidence 0012345556666777777777777777766532111110
Q ss_pred CCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
.....++..+...+...|++++|.+.+++..+
T Consensus 126 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 126 ------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00014667777778888888888888877654
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.76 E-value=0.00021 Score=63.20 Aligned_cols=98 Identities=10% Similarity=-0.126 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+...+.... +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34455555555566666666666666554432 223445555555555555555555555555543211 233444444
Q ss_pred HHHHhhcChhHHHHHHHHHHh
Q 004269 201 KLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.++...|++++|...|+...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 444444444444444444443
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00081 Score=57.87 Aligned_cols=96 Identities=13% Similarity=-0.146 Sum_probs=49.3
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
...+..+...+...|+++.|.+.|++..+.. |+ ...+..+...|...|++++|+..+++..+.. +.+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHH
Confidence 3344555555555566666666666555542 22 3445555555555555555555555554321 12333444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhh
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
.+..++...|++++|...|+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.75 E-value=0.00011 Score=61.15 Aligned_cols=95 Identities=4% Similarity=-0.140 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
.+......+...|++++|+..|+...... +.+...+..+..++...|+++.|...+++..+.+ +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444556677777777777777777655 3455566666677777777777777777777664 335566667777777
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 134 KGGYLEEASNLIYFLGE 150 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~ 150 (764)
..|++++|+..|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=0.00074 Score=58.14 Aligned_cols=96 Identities=9% Similarity=-0.160 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|+..++...+.... +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 3445555555555555566655555555432 233 334444444555555555555555544443111 23333
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHH
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
..+..++...|++++|...++...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333344444444444444333
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.74 E-value=0.00047 Score=58.57 Aligned_cols=62 Identities=6% Similarity=0.050 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+..+...+...|+++.|...+....+..+.+...+..+..++...|+++.|...|+...+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444555555555555555555555555544
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.73 E-value=0.00044 Score=58.78 Aligned_cols=97 Identities=10% Similarity=-0.094 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHh
Q 004269 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 237 (764)
...|..+...+...|++++|+..|+......+. +...+..+..++...|+++.|...++...+..+.+...+..+..+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344555555555555555555555555443221 3445555555555566666666666666555555666666777777
Q ss_pred hccCCHHHHHHHHHHHHH
Q 004269 238 TRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~ 255 (764)
...|+++.|...|++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777777766
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00043 Score=58.03 Aligned_cols=96 Identities=11% Similarity=-0.139 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhhhHHH
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-----LPVYNSF 164 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~l 164 (764)
+..+...+.+.|+++.|++.|++.++.. +.+...|..+..+|...|++++|++.|++..+..+-.+. ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344445555555555555555555443 234445555555555555555555555544332100000 0134444
Q ss_pred HHHHhccCCHHHHHHHHHHHhh
Q 004269 165 LGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..++...|++++|++.|+....
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555444
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.71 E-value=0.00025 Score=58.88 Aligned_cols=94 Identities=12% Similarity=-0.036 Sum_probs=56.8
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+.+.|++++|+..|+...+..+. +...|..+-.++...|++++|...+++..+..+.+...+..+..+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 334445555566666666666665554221 4445555555566666666666666666665555666666666677777
Q ss_pred CCHHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVA 255 (764)
Q Consensus 241 g~~~~A~~~~~~~~~ 255 (764)
|++++|...|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776665
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.71 E-value=5.6e-05 Score=62.51 Aligned_cols=86 Identities=8% Similarity=-0.089 Sum_probs=45.6
Q ss_pred hCCcchHHHHHHhccccC--CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHH
Q 004269 65 RGERSRASHLLLNLGHAH--HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
.|++++|+..|++..+.+ .+.+...+..+..++...|+++.|.+.+++..+.+ +.+...+..+..+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666665542 12233445555555556666666666666665553 334455555566666666666666
Q ss_pred HHHHHHhhh
Q 004269 143 NLIYFLGER 151 (764)
Q Consensus 143 ~~~~~m~~~ 151 (764)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.69 E-value=0.00034 Score=58.68 Aligned_cols=113 Identities=6% Similarity=0.012 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccc
Q 004269 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (764)
..+..+...+...|+++.|...++...+..+.+...+..+...+...|++++|...+++..+........
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------- 74 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED---------- 74 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh----------
Confidence 3455566666777777777777777776666677778888888888999999999999888743221000
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 333 (764)
......+|..+...+...|++++|.+.|++..+. .|+......
T Consensus 75 ---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 75 ---------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 0000147788888999999999999999998875 345444333
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.68 E-value=0.00039 Score=58.27 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=38.4
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHH
Q 004269 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG--IPHD----VLLYNTILKKA 624 (764)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~li~~~ 624 (764)
...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..... ..++ ..+|..+...+
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 333344444444444444443321 1233334444444444444444444444443321 0111 33444444445
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 004269 625 CEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 625 ~~~g~~~~a~~~~~~m~~ 642 (764)
...|++++|.+.+++..+
T Consensus 90 ~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 555555555555555443
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.59 E-value=0.00053 Score=60.04 Aligned_cols=140 Identities=11% Similarity=-0.179 Sum_probs=92.1
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcc-cc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIG-LN----NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI---- 157 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---- 157 (764)
...+..+...+...|+++.|.+.+++..+..-. ++ ..++..+...|...|++++|...+++..+...-.++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345778888888999999999999998865211 11 247888899999999999999999987643211111
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHh
Q 004269 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 237 (764)
...+..+...+...|++++|...++...+..... ++. .....++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~--------------~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---------------KDR--------------IGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------TCH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---------------cch--------------HhHHHHHHHHHHHH
Confidence 3356667777777888888888777665421000 000 00123344555666
Q ss_pred hccCCHHHHHHHHHHHHH
Q 004269 238 TRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~ 255 (764)
...|++++|.+.+++..+
T Consensus 140 ~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 677777777777776655
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.58 E-value=0.0017 Score=54.23 Aligned_cols=92 Identities=8% Similarity=-0.160 Sum_probs=39.0
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHh
Q 004269 94 LNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACA 169 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~ 169 (764)
...+...|+++.|...|+...+.. +.+. ..+..+...|...|++++|...|++..+..+-.+. ...+..+..++.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 333444455555555555544432 1112 23444444444555555555555544432211000 223344444444
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
+.|++++|...|+.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44445544444444444
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.53 E-value=0.0013 Score=55.06 Aligned_cols=57 Identities=16% Similarity=0.032 Sum_probs=27.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCCh---hhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPIL---PVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+...+...|++++|...|+.+.+..+ .+. ..+..+..++.+.|++++|...|+...+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555555543321 111 2344444555555555555555555544
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.48 E-value=0.0011 Score=69.82 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-------------hhhhHHHHHHHh
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-------------LPVYNSFLGACA 169 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~ 169 (764)
++.|.+.|+...+.. +-....|..+...|.+.|++++|+..|++..+...-.++ ...|..+..+|.
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333321 224457778888888999999999999988754322111 468888999999
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHH-
Q 004269 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE- 248 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~- 248 (764)
+.|++++|+..|+...+.... +...|..+-.+|...|++++|...|+...+..+.+..++..+..++.+.++.++|.+
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886433 677888888899999999999999999998888888899999999999888887753
Q ss_pred HHHHHH
Q 004269 249 TLQHMV 254 (764)
Q Consensus 249 ~~~~~~ 254 (764)
.+..|.
T Consensus 408 ~~~~~f 413 (457)
T 1kt0_A 408 IYANMF 413 (457)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 444443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.45 E-value=0.0008 Score=70.90 Aligned_cols=132 Identities=8% Similarity=-0.024 Sum_probs=106.1
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCC--------------hhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--------------EVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
...|..+...|.+.|++++|+..|+...+...... ...|..+..++.+.|++++|...++..++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44678888899999999999999999887532211 4788888889999999999999999999988
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
+.+..+|..+..+|...|++++|...|++..+ +.|+. ...|..+...+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~------------------------------~~a~~~l~~~~ 395 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQN------------------------------KAARLQISMCQ 395 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----------------------------------CHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHH
Confidence 88999999999999999999999999999988 55554 14788888888
Q ss_pred HccCCHHHHH-HHHHHHHH
Q 004269 304 GRTQNSGLAE-QLMLQMQS 321 (764)
Q Consensus 304 ~~~~~~~~a~-~~~~~m~~ 321 (764)
.+.++.+++. ..+..|..
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888887765 35555543
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.44 E-value=0.00014 Score=77.01 Aligned_cols=125 Identities=9% Similarity=-0.140 Sum_probs=84.8
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+.+.|++++|++.|++..+.... +..+|..+..++...|++++|.+.+++..+..+.+..++..+..+|...
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 334444556677777777777777665322 4666777777777778888888888777777777778888888888889
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHH--HHccCCHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA--CGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~ 318 (764)
|++++|.+.|++..+ ..|+.. ..+..+..+ +.+.|++++|++.+++
T Consensus 88 g~~~eA~~~~~~al~--~~p~~~------------------------------~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVK--VKPHDK------------------------------DAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCT------------------------------THHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHH--hCCCCH------------------------------HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999988887 444431 245555554 7778888888888773
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.41 E-value=0.00042 Score=73.41 Aligned_cols=89 Identities=12% Similarity=-0.122 Sum_probs=42.3
Q ss_pred HHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH
Q 004269 95 NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 174 (764)
..+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 33444455555555555555442 2234455555555555555555555555544321 12233444444444445555
Q ss_pred HHHHHHHHHHhh
Q 004269 175 VHANLCLDLMDS 186 (764)
Q Consensus 175 ~~A~~~~~~m~~ 186 (764)
++|++.|++..+
T Consensus 91 ~eA~~~~~~al~ 102 (477)
T 1wao_1 91 RAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.32 E-value=0.0019 Score=65.64 Aligned_cols=125 Identities=7% Similarity=-0.215 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhc--------------CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERY--------------GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
..+..+...|.+.|++++|+..|++..+.. .-+.+...|..+..+|.+.|++++|+..++...+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677778888899999998888776410 011234578888888999999999999999988754
Q ss_pred CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHH
Q 004269 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
. .+...|..+..++...|++++|...++...+..+.+...+..+..++...++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2567788888889999999999999999988777788888888888777777766643
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.29 E-value=0.00057 Score=56.27 Aligned_cols=84 Identities=10% Similarity=-0.022 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHhhcCC--CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH
Q 004269 172 HSMVHANLCLDLMDSRMV--GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
|++++|+..|+...+.+. +.+..++..+..++...|++++|...+++..+..+.+..++..+..++...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444443220 112233444444445555555555555555544455555555555666666666666666
Q ss_pred HHHHHH
Q 004269 250 LQHMVA 255 (764)
Q Consensus 250 ~~~~~~ 255 (764)
|++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.28 E-value=0.0025 Score=55.96 Aligned_cols=28 Identities=4% Similarity=-0.307 Sum_probs=18.2
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..+......+.+.|++++|+..|.....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666677777777777766554
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.28 E-value=0.0017 Score=57.08 Aligned_cols=121 Identities=13% Similarity=-0.030 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
....+......+.+.|++++|+..|++...... + .....+..... ...+. +.+...|..+.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~---~----------~~~~~~~~~~~--~~~~~----~~~~~~~~nla 70 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLD---T----------LILREKPGEPE--WVELD----RKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---H----------HHHTSCTTSHH--HHHHH----HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---H----------hcccCCCCHHH--HHHHH----HHHHHHHHHHH
Confidence 355777888899999999999999998764310 0 00000000000 00000 11334555566
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.++...|+++.|...++..++..+.+..+|..+..+|...|++++|...|+...+ +.|+.
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 6666667777777777766666666677777777777777777777777777776 44543
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.25 E-value=0.0021 Score=55.19 Aligned_cols=66 Identities=8% Similarity=-0.050 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhc-------CCCCHhhH----HHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKH-------YSLSIFSL----RKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.|..+-.++...|++++|...++..++- .+.+...| .....++...|++++|+..|++..+ +.|++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p~d 135 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIEER 135 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 4555555555556666555555555554 55566677 8888889999999999999999887 45543
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.24 E-value=0.0043 Score=52.65 Aligned_cols=111 Identities=7% Similarity=-0.120 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 004269 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD----YGDFDEA 598 (764)
Q Consensus 523 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A 598 (764)
++.++|+..|++..+.| .|+.. +-..|...+.+++|..+|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777766 33333 4444555566677777777777654 45566666666666 5677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004269 599 LNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 599 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
.++|++..+.| ++..+..|...|.. .++.++|.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776653 45556666666666 667777777777776654
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.22 E-value=0.00086 Score=67.45 Aligned_cols=150 Identities=8% Similarity=-0.131 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
....+..+...+.+.|++++|...|++..... |+.. .+...++..++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccch-------hhhhcccHHHHHHHHH----------HHHHHHHH
Confidence 34566677777888888888888888776432 3322 1223333444333221 13677777
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
.++.+.|++++|...++..++..+.+..++..+..+|...|++++|...|++..+ +.|+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~----------------- 298 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDK----------------- 298 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCH-----------------
Confidence 7888899999999999988887788888899999999999999999999998876 444431
Q ss_pred ccCCccccchhhhhhHHHHHHH-HHccCCHHHHHHHHHHHHHC
Q 004269 281 IPLNALPVMKVLRWSFSDVIHA-CGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+..+... ....+..+.+..+|..|...
T Consensus 299 -------------~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 299 -------------AIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------------------------
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 244444444 23445667777777777653
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.21 E-value=0.0049 Score=52.85 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=54.9
Q ss_pred HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhc-------cCcchhcccccccccccccCCCccCCccccchhhhhhH---
Q 004269 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-------MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF--- 296 (764)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 296 (764)
...|+.+..++.+.|++++|+..+++..+ + .|+. ...|
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~------------------------------~~A~~~~ 104 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDE------------------------------GKLWISA 104 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTH------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCch------------------------------HHHHHHH
Confidence 34899999999999999999999999998 5 6655 2577
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 297 -SDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 297 -~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
.....++...|++++|+..|++..+
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999876
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.20 E-value=0.0012 Score=66.32 Aligned_cols=148 Identities=11% Similarity=-0.085 Sum_probs=80.5
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+.+.|+++.|...|++.++.. |+... +...|+.+++...+. ...|+.+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 3446777788889999999999999988763 44331 233344444433221 126777777
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH-hhccCCHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 245 (764)
+|.+.|++++|+..++...+... .+...|..+..++...|++++|...|+...+..+.+..++..+..+ ....+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776532 2566777777888888888888888888877666666666666665 334556777
Q ss_pred HHHHHHHHHH
Q 004269 246 AYETLQHMVA 255 (764)
Q Consensus 246 A~~~~~~~~~ 255 (764)
+..+|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7888888776
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.19 E-value=0.0023 Score=65.07 Aligned_cols=122 Identities=6% Similarity=-0.062 Sum_probs=98.9
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhc--------------CCC-CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSR--------------MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
.+..+...+.+.|++++|+..|+...+. ... .+..+|..+..++.+.|++++|...++..++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4777888899999999999999988761 011 2456788888889999999999999999999888
Q ss_pred CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH
Q 004269 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
.+..++..+..+|...|++++|...|++..+ +.|+. ...+..+...+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~------------------------------~~~~~~l~~~~~ 352 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPED------------------------------KAIQAELLKVKQ 352 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHH
Confidence 8899999999999999999999999999988 55554 146666666666
Q ss_pred ccCCHHHHH
Q 004269 305 RTQNSGLAE 313 (764)
Q Consensus 305 ~~~~~~~a~ 313 (764)
..++.+++.
T Consensus 353 ~~~~~~~a~ 361 (370)
T 1ihg_A 353 KIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.15 E-value=0.0024 Score=67.14 Aligned_cols=131 Identities=9% Similarity=-0.023 Sum_probs=88.3
Q ss_pred HHhhCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC---C-HHHHHH
Q 004269 554 CSIIRCFKSASALVSMMVRD---GFYP----QTMTYTALIKILLDYGDFDEALNLLDLVSLE---GIPH---D-VLLYNT 619 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~---g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p---~-~~~~~~ 619 (764)
+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.++. -+.| + ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667888888888766643 1112 2456788888888888888888888876531 1122 2 347888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcccc
Q 004269 620 ILKKACEKGRIDVIEFIIEQMHQ---NKVQPDPS----TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 684 (764)
|...|...|++++|+.++++..+ .-+.||.. +...+-.++...|.+++|..++++++++.++..+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88889999999999988888764 11223322 2233445777889999999999998876654443
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.14 E-value=0.021 Score=61.58 Aligned_cols=120 Identities=7% Similarity=-0.168 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc-ChhHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK-NLSAVHE 214 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~ 214 (764)
++++.+.++.+.+.+ +-+..+|+.-..++.+.+ +++++++.++.+.+..+. +..+|+.--.++...| .++++.+
T Consensus 89 ~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence 444444444444322 123334444444444444 335555555555444322 4444444444444444 4455555
Q ss_pred HHHHHHhcCCCCHhhHHHHHHHhhc--------------cCCHHHHHHHHHHHHHhhccCcc
Q 004269 215 IWEDYIKHYSLSIFSLRKFVWSFTR--------------LRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~li~~~~~--------------~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.++.+++..+.+..+|+....++.+ .+.++++.+.+++..+ ..|+.
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~ 225 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPND 225 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCC
Confidence 5555555555555555555444433 2567889999988887 56655
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.12 E-value=0.00099 Score=70.03 Aligned_cols=98 Identities=5% Similarity=-0.156 Sum_probs=48.7
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhcccc-----C--CCCC
Q 004269 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-----H--HSLG 86 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~ 86 (764)
+..+..+|++++|. .++++.. .....++|-.......+++.+...|...|++++|..++++.... | .+-.
T Consensus 316 a~~~~~qg~~~eA~-~l~~~aL--~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 316 IDKARSEGLYHEVV-KLCRECL--EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHTTTCHHHHH-HHHHHHH--HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHhCCCHHHHH-HHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34466788888887 5554443 22233444333344555555556666666666666655544321 1 1111
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 114 (764)
..+++.|...|...|++++|..++++..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2234444455555555555554444443
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00053 Score=55.61 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------H
Q 004269 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-------S 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~ 650 (764)
+...|..+...+.+.|++++|.+.+++..+.. +.+...|..+...+...|++++|++.+++.++ ..|+. .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 45567777788888888888888888887642 34677888888888888888888888888885 45553 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 004269 651 TCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
.+..+..++...|++++|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 3333444555555555554433
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.10 E-value=0.016 Score=62.43 Aligned_cols=181 Identities=9% Similarity=-0.116 Sum_probs=139.3
Q ss_pred HHHHHhhCC-cchHHHHHHhccccCCCCChhcHHHHHHHhhCCCC----------hhHHHHHHHHHHHcCccccHHHHHH
Q 004269 59 IVDALCRGE-RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD----------PLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 59 i~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
+.+..+.|. .++|++.++.+...+ +-+...|+.--.++...++ ++++++.++.+.+.+ +-+..+|+.
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344455555 578899999999876 3334455554444444455 889999999999875 557778888
Q ss_pred HHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 004269 128 MMQALCKGG--YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH-SMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 128 li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
-.-.+.+.| +++++.+.++++.+.+ +-|..+|+.-..++.+.| .++++++.++.+.+..+. +..+|+.....+.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~ 189 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHH
Confidence 888888889 7799999999998765 346678888777778888 899999999999887554 7778887776665
Q ss_pred hh--------------cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHH
Q 004269 205 WQ--------------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 205 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
.. +.++++.+.+....+..|.|..+|+.+-..+.+.+..+
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 53 55788999999988888889999999888888777643
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.10 E-value=0.0016 Score=53.21 Aligned_cols=78 Identities=9% Similarity=-0.144 Sum_probs=44.1
Q ss_pred hHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 70 RASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
.|+..|+...... +.+...+..+..++...|+++.|...+++..+.+ +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555443 3344555555556666666666666666666553 3344455556666666666666666666554
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0017 Score=52.54 Aligned_cols=65 Identities=17% Similarity=-0.123 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|+...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666666667777766666665432 224455666666666667777776666666653
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.89 E-value=0.014 Score=49.41 Aligned_cols=112 Identities=7% Similarity=-0.138 Sum_probs=91.5
Q ss_pred hCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004269 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDV 632 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 632 (764)
.+++++|..+|++..+.| .|+.. |...|...+.+++|.++|++..+.| ++..+..|-..|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357889999999999987 33333 7777888888999999999998764 67788888888888 889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhh
Q 004269 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVN----CGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 679 (764)
|.++|++..+.| +...+..|-..|.. .+++++|.+++++--..+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999865 45666677778888 899999999999765544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.87 E-value=0.0029 Score=54.14 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=80.9
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC----------HHHHHHHHHHHHHhhccCcchhcccccccccc
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD----------LKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (764)
+.+.+++|.+.++...+..+.+...|..+..++...++ +++|+..|++..+ +.|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~------------ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKK------------ 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTC------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCc------------
Confidence 44556677777777777677777777777777776665 4699999999998 67765
Q ss_pred cccCCCccCCccccchhhhhhHHHHHHHHHccC-----------CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 004269 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ-----------NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 343 (764)
..+|..+..+|...| ++++|++.|++..+. .|+...|...+..+
T Consensus 80 ------------------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~----- 134 (158)
T 1zu2_A 80 ------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----- 134 (158)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-----
T ss_pred ------------------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH-----
Confidence 258889999998764 899999999999884 67777666555533
Q ss_pred hhHHHHHHHHHHHC
Q 004269 344 LRNGMEVLKIMQQN 357 (764)
Q Consensus 344 ~~~a~~~~~~~~~~ 357 (764)
+++.+++-.+...
T Consensus 135 -~ka~el~~~~~~~ 147 (158)
T 1zu2_A 135 -AKAPQLHAEAYKQ 147 (158)
T ss_dssp -HTHHHHHHHHHHS
T ss_pred -HhCHhccCccccc
Confidence 4445555544443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.82 E-value=0.0067 Score=49.38 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
+...++...+..+.+...+..+..+|...|++++|...|++..+ ..|+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~----------------------------- 52 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTY----------------------------- 52 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCc-----------------------------
Confidence 44555555555555566666666666666666666666666665 33332
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...|..+..++...|++++|...|++..+
T Consensus 53 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 53 -SVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13566666666666666666666666554
No 204
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.73 E-value=1.7e-06 Score=86.26 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=120.4
Q ss_pred HHHHHHHhhcccchhhhhccccccc-hhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhc
Q 004269 11 QLIADSFCKSKFHKHERRNVANKLE-LSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 11 ~~~~~~~~~~g~~~~a~~~~~~~~~-~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (764)
-..-..|-+-+...+|.+.+++.+. ..|.+.-+..++ ....|..+..+....++..+|++.|-+. -|+..
T Consensus 15 ~~AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n---~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~ 85 (624)
T 3lvg_A 15 VPRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSS 85 (624)
T ss_dssp ------------CCSTTTTCCGGGCCSTTTTTSSSSCC---CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCS
T ss_pred chHHHHHHhccCcHHHHHHHHHhccccHHHHHHHHHhC---CccHHHHHHHHHHccCchHHHHHHHHhC------CChHH
Confidence 3344556677777788855566553 234333333332 2356777788888888888888766332 46667
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
|..++.++.+.|.++.....+.-..+. ..++.+=+.|+-+|++.++..+-++++. .||..-...+..-|.
T Consensus 86 y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCY 155 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHH
Confidence 889999999999999888887765554 3344555688888999888766444321 366666777777777
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH
Q 004269 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
..|.++.|.-+|..+.. |..|-..+...|++..|.+.-. -..++.+|-.+-.+|...+++.-|.-.
T Consensus 156 ~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr-----KAns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR-----KANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT-----TCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH-----hcCChhHHHHHHHHHhCchHHHHHHHh
Confidence 78888777776655433 2222233444455444332211 234555666666666666666655444
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.62 E-value=0.0093 Score=45.79 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=39.5
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
.+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 34444455555555555555555555543 2344455555556666666666666666554432 12333444444444
Q ss_pred h
Q 004269 169 A 169 (764)
Q Consensus 169 ~ 169 (764)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.61 E-value=0.012 Score=45.06 Aligned_cols=64 Identities=14% Similarity=-0.076 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|+...+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455566666666666777766666665432 223445556666666666666666666665553
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.54 E-value=0.006 Score=48.22 Aligned_cols=60 Identities=15% Similarity=-0.084 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
..+..+...|...|++++|+..|++..+.+ +.+...|..+..+|.+.|++++|...|+..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444443322 112223444444444444444444444443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.48 E-value=0.012 Score=50.23 Aligned_cols=88 Identities=7% Similarity=-0.102 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC----------hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc-
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN----------LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL- 240 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~- 240 (764)
+.+++|.+.++...+..+. +...|..+-.++...++ +++|+..|++.++-.+.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3344444444444443221 33344444444444333 45777777777777777777888888888766
Q ss_pred ----------CCHHHHHHHHHHHHHhhccCcc
Q 004269 241 ----------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 241 ----------g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
|++++|.+.|++..+ +.|+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~ 124 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDN 124 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCC
Confidence 489999999999988 67765
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.47 E-value=0.24 Score=40.10 Aligned_cols=138 Identities=12% Similarity=0.046 Sum_probs=100.1
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||..|--....-+-+-..++++.+..-+.+. ..|++.....
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHHHH
Confidence 478888888888877653 55666666666666667777777888776544322 2344444444
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
.+-.+- .+..-....+.....+|.-++-.+++..+....+|++...-.+..+|.+.|+..+|.+++.+.-++|++
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 333321 244555667778888999999999999988888999999999999999999999999999999998875
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.13 E-value=0.51 Score=46.61 Aligned_cols=141 Identities=13% Similarity=0.013 Sum_probs=68.4
Q ss_pred CCChhhHHHHHHHHHH--cC---ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---hC--ChhHHH---HHHHHHH
Q 004269 506 PLGTPTYNTVLHSLVE--AQ---ESHRAMEIFKQMKTCGIPPNA-ATYNIMIDCCSI---IR--CFKSAS---ALVSMMV 571 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~--~~---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~---~g--~~~~a~---~~~~~~~ 571 (764)
+.+...|...+.+... .+ ...+|..+|++..+. .|+- ..+..+..+|.. .+ ...... .-+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4466677777765433 22 347788888888875 4553 344433333321 01 000110 1111111
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 572 RD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 572 ~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
.. .-+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 10 113344555555444444556666666665555442 5555555555555555666666655555553 345544
Q ss_pred HH
Q 004269 651 TC 652 (764)
Q Consensus 651 ~~ 652 (764)
+|
T Consensus 345 t~ 346 (372)
T 3ly7_A 345 TL 346 (372)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.06 E-value=0.026 Score=44.48 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+..+...+...|++++|...|+..++..+.+..+|..+..+|...|++++|...|++..+
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444445555555555544444444445555555555555555555555555544
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.81 E-value=0.31 Score=55.42 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=61.4
Q ss_pred HHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHH
Q 004269 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 566 (764)
....|++++|.++.+.. .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+....+
T Consensus 662 ~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 34567777777776544 3556788888888888888888888887643 33444455556666655555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (764)
-+.....|- ++....+|.+.|++++|++++.+
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 544444431 23344445556666666655543
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.78 E-value=1.1e-05 Score=80.44 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 660 (764)
.-..-...|.+.++++++..+.++ .+ .|.-.|...+..|+.+-++++++-..+.| +..+|...+-.|.
T Consensus 456 FRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCY 523 (624)
T 3lvg_A 456 FRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCY 523 (624)
T ss_dssp HHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHh
Confidence 334445567788888888876543 22 23334556677899999999999988755 4466777777777
Q ss_pred hcCChHHHHHH
Q 004269 661 NCGFHNSAMEA 671 (764)
Q Consensus 661 ~~g~~~~a~~~ 671 (764)
..=+.+-++++
T Consensus 524 dLlrpDvVlEl 534 (624)
T 3lvg_A 524 DLLRPDVVLET 534 (624)
T ss_dssp SSSSCHHHHHH
T ss_pred hccChHHHHHH
Confidence 77777777664
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.77 E-value=0.15 Score=50.41 Aligned_cols=144 Identities=10% Similarity=0.040 Sum_probs=87.8
Q ss_pred CCCChhhHHHHHHHHHh--h---cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc---C-----CHHHHHHHHHHHHH
Q 004269 189 VGKNEVTYTELLKLAVW--Q---KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---R-----DLKSAYETLQHMVA 255 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g-----~~~~A~~~~~~~~~ 255 (764)
.+.+...|...+++... . .++.+|..+|++.++..|.....+..+..+|.-. + ........+.....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34466677777765432 2 2346777788888777776666666555554310 0 11111112221111
Q ss_pred hhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 004269 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335 (764)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 335 (764)
....|.. ..+|.++...+...|++++|...+++....+ |+...|..+-
T Consensus 270 ~~~~~~~------------------------------a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG 317 (372)
T 3ly7_A 270 LPELNNL------------------------------SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLG 317 (372)
T ss_dssp CGGGTTC------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred cccCCcC------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHH
Confidence 1122222 2577777777777789999999999888864 6766666667
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004269 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 366 (764)
..+.-.|++++|.+.+++....+ |...+|
T Consensus 318 ~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 318 KVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 77778889999998888887754 344444
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.25 E-value=0.11 Score=53.37 Aligned_cols=85 Identities=7% Similarity=-0.019 Sum_probs=45.8
Q ss_pred hCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHH
Q 004269 557 IRCFKSASALVSMMVRD---GFYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLE-----G-IPHD-VLLYNTILK 622 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~ 622 (764)
.|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666555432 11122 345566666666666666666666665421 1 1111 234566666
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 004269 623 KACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 623 ~~~~~g~~~~a~~~~~~m~ 641 (764)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666554
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.05 E-value=0.073 Score=41.46 Aligned_cols=57 Identities=16% Similarity=-0.041 Sum_probs=30.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 129 MQALCKGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
...+...|++++|...|++..+.. +.+.. .|..+..+|...|++++|+..|+...+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555566666666666554432 22334 5555555555666666666666655553
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.95 E-value=0.14 Score=52.77 Aligned_cols=88 Identities=8% Similarity=-0.045 Sum_probs=42.1
Q ss_pred HHhhCChhHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 004269 554 CSIIRCFKSASALVSMMVRDG---FYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLE-----G-IPHD-VLLYNT 619 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ 619 (764)
+...|++++|..++++..+.. +.|+ ..+++.|..+|...|++++|+.++++.+.- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334455555555555555321 1111 234555555555555555555555554321 1 0111 224555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 004269 620 ILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~ 641 (764)
|...|...|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5555555555555555555544
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.85 E-value=0.078 Score=54.60 Aligned_cols=86 Identities=15% Similarity=0.043 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHhhh--cCCC---CC-hhhhHHHHHHHhccCCHHHHHHHHHHHhhc-----CC-CCC-hhhHHHHHHH
Q 004269 136 GYLEEASNLIYFLGER--YGIY---PI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR-----MV-GKN-EVTYTELLKL 202 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~--~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~ll~~ 202 (764)
|++++|+.++++..+. .-+. |+ ..+++.|..+|...|++++|+.++++.... |. .|+ ..+++.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554321 1111 22 235666666677777777776666665431 21 222 2356666666
Q ss_pred HHhhcChhHHHHHHHHHHh
Q 004269 203 AVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~ 221 (764)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777666654
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.66 E-value=0.078 Score=54.71 Aligned_cols=92 Identities=16% Similarity=-0.087 Sum_probs=61.4
Q ss_pred HHhhCCCChhHHHHHHHHHHHcC-------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh----c-CCCCCh-hhh
Q 004269 95 NYCARSPDPLFVMETWRMMEEKE-------IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER----Y-GIYPIL-PVY 161 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~-~~~ 161 (764)
..+.+.|++++|..++++.++.. .+....+++.|..+|...|++++|+.++++..+. . ...|++ .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445677778888877776531 1223457778888888888888888888766431 1 122332 367
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 162 NSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+.|...|...|++++|+.++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888888888888877654
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.49 E-value=0.31 Score=37.43 Aligned_cols=66 Identities=12% Similarity=-0.076 Sum_probs=40.1
Q ss_pred CChhcHHHHHHHhhCCCC---hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004269 85 LGADDFFHILNYCARSPD---PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (764)
.++..+..+..++...++ .+.|..++++.++.+ +-++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555543322 566777777777664 445556666666677777777777777776543
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.47 E-value=0.4 Score=36.84 Aligned_cols=64 Identities=14% Similarity=-0.033 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 578 QTMTYTALIKILLDYGD---FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
++..+..+..++...++ .++|..++++.++.. +-++..+..+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444443332 455555555555432 22344555555555555566666665555554
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.43 E-value=0.46 Score=40.07 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 004269 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYG---DFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 561 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
..+.+-|.+..+.|. ++..+...+..++++++ +++++..+++...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444444443 45555555555666655 4446666666655432 12 12233334445566666666666
Q ss_pred HHHHHHHCCCCCCH
Q 004269 636 IIEQMHQNKVQPDP 649 (764)
Q Consensus 636 ~~~~m~~~~~~p~~ 649 (764)
.++.+++ +.|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 6666664 44543
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.29 E-value=0.57 Score=53.26 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=102.7
Q ss_pred HHhcCcHHHHHH-HHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHH
Q 004269 487 LGAEGMIRELIQ-YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565 (764)
Q Consensus 487 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 565 (764)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. | ..- .......|+++.|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i---~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~~~----f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV---EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-DQK----FELALKVGQLTLARD 673 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC---CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-HHH----HHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcC---CchHHHHHHHHHHHhCCChHHheecCCC-------c-chh----eehhhhcCCHHHHHH
Confidence 345788888887 55332 1122337777888888999999876632 1 111 233456799999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004269 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 566 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
+.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....|.
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 86543 4778999999999999999999999998741 34455555567777776666666655442
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 646 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
++.-..+|.+.|++++|.+++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 222334566677777777777644
No 224
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=4.8 Score=41.50 Aligned_cols=168 Identities=7% Similarity=0.030 Sum_probs=91.7
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhc-CCCC-----HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc-Ccchhcccccc
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIKH-YSLS-----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEG 270 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 270 (764)
.|.+.+...|++.+|..++..+... ...+ ...+...++.|...+++..|..++.++...-.. +..
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~-------- 213 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY-------- 213 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC--------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc--------
Confidence 3455566666666666666666532 1111 235666777888889999998888887542211 111
Q ss_pred cccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHH----HHHHHhcCChh
Q 004269 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGF----IRAIVSDRGLR 345 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l----l~~~~~~~~~~ 345 (764)
.+.-...|...+..+...+++.+|...|.+....- +.-|...+..+ +....-.+...
T Consensus 214 ------------------~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~ 275 (445)
T 4b4t_P 214 ------------------ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN 275 (445)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred ------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc
Confidence 01112466777788888999999988887775421 11122222222 11111222222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhh
Q 004269 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKA--LELDLAEALLDQISR 391 (764)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~ 391 (764)
.-..+..........++...|..++.+|... .+++.+...|.....
T Consensus 276 ~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 276 LQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp TTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred hHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 2222333332222234667788888888765 356666666655433
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.20 E-value=3 Score=39.49 Aligned_cols=85 Identities=7% Similarity=-0.041 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhcCCC--CHhhHHHHHHHhhcc-----CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 210 SAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRL-----RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
..|..++++.++-.+. +...|..|...|... |+.++|.+.|++..+ +.|+..+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~i------------------ 239 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDP------------------ 239 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCS------------------
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCc------------------
Confidence 3555555555554443 456778888888774 888888888888887 5553200
Q ss_pred CCccccchhhhhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCC
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRT-QNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~ 325 (764)
.++......++.. |+.+.+.+.+++.......
T Consensus 240 -----------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 240 -----------DHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp -----------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred -----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3555666777664 7788888888888776544
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.10 E-value=2 Score=34.95 Aligned_cols=65 Identities=15% Similarity=0.038 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhc
Q 004269 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 681 (764)
.+...++....+|+.+.-.+++..+.. +-+|++....-+..+|.+-|+..+|.+++.+.-++|++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 334444445555555555555555322 23444555445555555555555555555555544443
No 227
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.04 E-value=0.18 Score=39.12 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHh-hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIF-SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+...|++++|...++...+..+.+.. .+..+..+|...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555554444555 555555556666666666666666555
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.98 E-value=0.36 Score=40.69 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=29.4
Q ss_pred ChhhHHHHHHHHHhhc---ChhHHHHHHHHHHhcCCC--CHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 192 NEVTYTELLKLAVWQK---NLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 192 ~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+..+...+-.++++++ +++++..+++...+...| ....+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3333333333444433 333444444444443312 233334444455555566666666655555
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.55 E-value=1.6 Score=37.89 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=24.6
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHh
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
...|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|....
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3455555555554433 244455555555555555555555555443
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.31 E-value=0.84 Score=35.82 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEG------IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+..-+..|...+.+.|+++.|...++...+.. -.+...++..|..++.+.|+++.|...++++.+ +.|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 33444556667777777777777777665420 123455677777777777777777777777764 456543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.18 E-value=3.9 Score=35.42 Aligned_cols=101 Identities=6% Similarity=0.029 Sum_probs=62.1
Q ss_pred HHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHH
Q 004269 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565 (764)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 565 (764)
....+|+++.|.++.+.. .+...|..+.......|+++-|.+.|..... |..+.-.|...|+.+.-..
T Consensus 14 LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 344667777777776554 2455777777777777777777777776543 3344445555666666555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604 (764)
Q Consensus 566 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (764)
+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555444431 34445555566777777777654
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.15 E-value=0.71 Score=36.26 Aligned_cols=66 Identities=6% Similarity=-0.112 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERY-----GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+...+..|...+.+.|+++.|..+|+...+.. +-.+...++..|..++.+.|+++.|...++...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444455555666666666666665554321 0112334555566666666666666666666555
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.43 E-value=1.5 Score=41.46 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 004269 581 TYTALIKILLD-----YGDFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEK-GRIDVIEFIIEQMHQN 643 (764)
Q Consensus 581 ~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 643 (764)
.|..|...|.+ -|+.++|.+.|++.++. .| +..++....+.++.. |+.+++.+.+++.+..
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 44444444444 24555555555554432 22 233444444444442 4555555555555443
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.86 E-value=13 Score=38.26 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHhhc-----CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 171 LHSMVHANLCLDLMDSR-----MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.|+++.|++.+-.+.+. ...........++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 36788888877666542 2233445567778888888888877776665554
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.82 E-value=2 Score=35.76 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=48.1
Q ss_pred CCChhhHHHHHHHHHHcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHHHH---HHhhCChhHHHHHHHHHHH
Q 004269 506 PLGTPTYNTVLHSLVEAQES------HRAMEIFKQMKTCGIPPNAA----TYNIMIDC---CSIIRCFKSASALVSMMVR 572 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~~~~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~~---~~~~g~~~~a~~~~~~~~~ 572 (764)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|.-+.-- +...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33455666666665555666 5666666665553 444321 11111110 1122455555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004269 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 573 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
.+-+. ...|-....-=.+.|+++.|.+++.+.+..+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 32222 4444444444445555555555555555433
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.36 E-value=2.1 Score=34.63 Aligned_cols=83 Identities=8% Similarity=-0.045 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC-CHHHH-HHHHHHHHhcCChHH
Q 004269 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV---IEFIIEQMHQNKVQP-DPSTC-HFVFSGYVNCGFHNS 667 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p-~~~~~-~~ll~~~~~~g~~~~ 667 (764)
..+..+.+-|.+....| .|+..+--.+.+++.+..+... ++.+++.+...+ .| +..-+ +.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34444555555554434 2666666666667777665544 777777766532 23 23333 333347778888888
Q ss_pred HHHHHHHHHH
Q 004269 668 AMEALQVLSM 677 (764)
Q Consensus 668 a~~~~~~~~~ 677 (764)
|+++++.+..
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.90 E-value=13 Score=40.91 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=40.3
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
+.+...|+++.|+.+-.+.+.-.|.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567777777777777777677777788888888888888888877777764
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.28 E-value=2.2 Score=35.50 Aligned_cols=103 Identities=8% Similarity=0.077 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhhCCh------hHHHHHHHHHHHCCCCCCH-HHHHHHHHHH------HhcCCHHHHHHHHHHHHHCC
Q 004269 543 NAATYNIMIDCCSIIRCF------KSASALVSMMVRDGFYPQT-MTYTALIKIL------LDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 543 ~~~t~~~ll~~~~~~g~~------~~a~~~~~~~~~~g~~p~~-~~~~~li~~~------~~~g~~~~A~~~~~~m~~~~ 609 (764)
|..++-..+....+.|+. ++.+++|+..... ++|+. ..|...|..+ ...+++++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445565666666666766 6777777777764 45542 1222222222 23478888888888886542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004269 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 610 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
-+- ...|.....--.++|+++.|.+++.+.+..+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 6777777777778888888888888888655443
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.43 E-value=2.3 Score=34.42 Aligned_cols=84 Identities=10% Similarity=-0.088 Sum_probs=50.7
Q ss_pred CcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhH---HHHHHHHHHHcCcc-ccHHHHHHHHHHHHccCCHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLF---VMETWRMMEEKEIG-LNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
....+.+.|......+ .++..+-..+..++.++.+... ++.+++...+.+.+ ......-.|.-++.+.|++++|+
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555544444 3666665556666666665554 77777777776421 12333335555777888888888
Q ss_pred HHHHHHhhh
Q 004269 143 NLIYFLGER 151 (764)
Q Consensus 143 ~~~~~m~~~ 151 (764)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.06 E-value=3.9 Score=31.20 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 656 (764)
+..+-++.+....+-|++.+..+.+++|.+.+++..|.++++-.+.+ +.+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44555555555666777777777777777777777777777766653 333344455544
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.45 E-value=2.8 Score=45.98 Aligned_cols=125 Identities=9% Similarity=-0.061 Sum_probs=75.0
Q ss_pred HHHHHhccCC-HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh-HHHHHHHHHHh-------cCCC-CH------
Q 004269 164 FLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIK-------HYSL-SI------ 227 (764)
Q Consensus 164 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~-------~~~~-~~------ 227 (764)
|++.+...++ ++.|..+|+.+....+..+......++..+...++-+ +|.+++.+..+ ..++ +.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3333334455 5778888888887633222222223333333332211 33333333322 1111 11
Q ss_pred ----hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 228 ----FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 228 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
.....-...+...|+++.|+++-++... ..|+.+ .+|..|..+|
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF------------------------------~tW~~La~vY 381 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSF------------------------------ESWYNLARCH 381 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH------------------------------HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhh------------------------------HHHHHHHHHH
Confidence 1122223345678999999999999887 677763 6999999999
Q ss_pred HccCCHHHHHHHHHHHH
Q 004269 304 GRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 304 ~~~~~~~~a~~~~~~m~ 320 (764)
...|+++.|+-.++.+.
T Consensus 382 i~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 382 IKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHTTCHHHHHHHHHHSC
T ss_pred HHhccHHHHHHHHhcCC
Confidence 99999999999888864
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.75 E-value=40 Score=37.89 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=22.3
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEE 115 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 115 (764)
.|..++++..+.++.+.+.++|..+..
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 577788888888899999999988874
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.82 E-value=3.8 Score=31.22 Aligned_cols=61 Identities=5% Similarity=-0.110 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+.-+..+-++.+-...+.|++....+.+++|.+.+|+..|.++++.+.....+...+|..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 3444555555555556666666666666666666666666666666654433333344443
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.07 E-value=3.4 Score=35.16 Aligned_cols=74 Identities=11% Similarity=-0.018 Sum_probs=47.4
Q ss_pred cccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccC-CCCCh-------hcHHHHHHHhhCCCChhHHHHHHHHH
Q 004269 42 TTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGA-------DDFFHILNYCARSPDPLFVMETWRMM 113 (764)
Q Consensus 42 ~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m 113 (764)
+.-|..|.-..-.+...+..+...+.++.|+-+.+.+.... ..++. .++..+..++...+++..|...|++.
T Consensus 10 ~~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 10 HSSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566777666677778999999999999999888765432 12331 24566777888889999999999987
Q ss_pred HH
Q 004269 114 EE 115 (764)
Q Consensus 114 ~~ 115 (764)
++
T Consensus 90 Lq 91 (167)
T 3ffl_A 90 LQ 91 (167)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.70 E-value=7.7 Score=31.41 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
..+-++.+....+-|++.+..+.+++|.+.+|+..|.++++-.+.+ +.+...+|..++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 4445555666677788888888888888888888888888877663 4444556666554
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.96 E-value=4.2 Score=41.07 Aligned_cols=67 Identities=9% Similarity=-0.091 Sum_probs=43.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh-----cCCCCChhh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVT 195 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 195 (764)
.++..+...|++++|...+..+...+ +-+...|..++.+|.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555566777777777777665443 33556777777777777777777777766544 266666554
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.93 E-value=4.5 Score=40.83 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004269 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
..++..+...|+.++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345666677777777777777766432 34666777777777777777777777776643 377777665
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.20 E-value=12 Score=30.23 Aligned_cols=61 Identities=5% Similarity=-0.096 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHH
Q 004269 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
.-+..+-++.+-...+.|++......|++|.+.+|+..|.++++.+.....+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3344555555666667777777777777777777777777777766654444444454443
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.27 E-value=26 Score=28.49 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004269 611 PHDVLLYNTILKKACEKGRI---DVIEFIIEQMHQNKVQP-D-PSTCHFVFSGYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 676 (764)
.|++.+--.+.+++.+..+. .+++.+++.+...+ | . ......|.-++.+.|++++|+++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555555566666666543 45666777666543 3 2 3334444447777777777777777554
No 250
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.25 E-value=12 Score=35.24 Aligned_cols=82 Identities=6% Similarity=-0.018 Sum_probs=39.3
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHcc
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~ 135 (764)
+...++.|+.+-+..+++.-.......+..-. +.|...+..|+.+ +++.+.+.|..++. .-. ..+...+..
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~ 82 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGA-TPFLLAAIA 82 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCC-CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCC-CHHHHHHHc
Confidence 45567788877666666543222211122222 3344444556654 44445555654432 112 223344456
Q ss_pred CCHHHHHHHHH
Q 004269 136 GYLEEASNLIY 146 (764)
Q Consensus 136 g~~~~A~~~~~ 146 (764)
|+.+-+..+++
T Consensus 83 ~~~~~v~~Ll~ 93 (285)
T 1wdy_A 83 GSVKLLKLFLS 93 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77665555554
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.10 E-value=71 Score=37.52 Aligned_cols=144 Identities=13% Similarity=0.029 Sum_probs=84.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-------------------
Q 004269 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP------------------- 542 (764)
Q Consensus 482 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p------------------- 542 (764)
.++..+.+.+..+.+.++..-.. .+....-.+..+|...|++++|.+.|.+... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~--~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN--SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 35555666666666666544332 2333333445567777888888888866421 1110
Q ss_pred ----CHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004269 543 ----NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614 (764)
Q Consensus 543 ----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 614 (764)
-..-|..++..+.+.+.++.+.++-....+..-+-+ ...|..+.+++...|++++|...+-.+.....+ .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 112356667777777777777777766665321111 125677778888888888888888777654433 3
Q ss_pred HHHHHHHHHHHHcCCH
Q 004269 615 LLYNTILKKACEKGRI 630 (764)
Q Consensus 615 ~~~~~li~~~~~~g~~ 630 (764)
..+..|+...+..|..
T Consensus 972 ~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhCCCh
Confidence 4556666666655544
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.19 E-value=58 Score=31.50 Aligned_cols=115 Identities=10% Similarity=-0.043 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHH----HHHhc-cCCCCHHHHHHHHHHhc
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF----AKMRQ-KLRPDIRTYELLFSLFG 440 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~----~~m~~-~~~p~~~t~~~ll~~~~ 440 (764)
|.++..=|.+.+++++|.+++..-. ..+.+.|+...|-++- +-..+ ++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445555777888888887765443 2355566665554443 44445 78888888777777666
Q ss_pred CCCCchhhchhhhhhhhHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 004269 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNN--IQHSHISMKNLLKALGAEGMIRELIQYF 500 (764)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 500 (764)
....-... ..+-+........+.| ..-++.....+...|.+.+++.+|...|
T Consensus 106 ~~~~~~p~--------r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPV--------RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHH--------HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcH--------HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 54432111 1111222222222222 2234445555667777777777777766
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.30 E-value=16 Score=33.98 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=37.1
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+.|+++.+++....-++..|.|......|+..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566666666666666666677777777777777777777777777777666
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.60 E-value=73 Score=30.54 Aligned_cols=168 Identities=11% Similarity=0.050 Sum_probs=82.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHH----HHHHhc-cCCCCHHHHHHHHHHhcCC
Q 004269 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI----FAKMRQ-KLRPDIRTYELLFSLFGNV 442 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l----~~~m~~-~~~p~~~t~~~ll~~~~~~ 442 (764)
++..=|.+.+++++|.+++..-.. .+.+.|+...|-++ ++-..+ +++++..+...++..+...
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGAL------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 344445566666666666544322 24445555444443 333344 6777776666666655443
Q ss_pred CCchhhchhhhhhhhHHHHHHHHHHHHHCCC--CccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 004269 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNI--QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520 (764)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 520 (764)
..-.. ...+-+........+.|- .-++.....+...|.+.+++.+|...|--. ...|...+..++.-+.
T Consensus 106 p~~~~--------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 106 DPSEP--------NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWL 176 (312)
T ss_dssp CTTCT--------THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHH
T ss_pred CCCCc--------hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHH
Confidence 32111 112222222333333322 235566667777888888888888877422 1112334444443333
Q ss_pred Hc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 004269 521 EA---QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571 (764)
Q Consensus 521 ~~---~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 571 (764)
.. |...++ +...-..++ -|.-.++...|..+|+...
T Consensus 177 ~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 33 332222 111112222 2344677777777777655
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.98 E-value=78 Score=30.62 Aligned_cols=171 Identities=9% Similarity=0.113 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 004269 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI----FKQMKTCGIPPNAATYNIMI 551 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l----~~~m~~~g~~p~~~t~~~ll 551 (764)
-...|.++..-|.+.+++++|.+++... ...+.+.|+..-|-++ .+-..+.++++|......++
T Consensus 34 AHQ~~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 34 AAQETRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456778888899999999999886432 2334555666554443 35556677888888888787
Q ss_pred HHHHhhCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 552 DCCSIIRCFK-SASALVSMMVR----DG--FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624 (764)
Q Consensus 552 ~~~~~~g~~~-~a~~~~~~~~~----~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 624 (764)
..+.....-+ .=..+.+.+++ .| ..-|+.....+...|.+.+++.+|...|- . |-.+.+..+..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7776554321 11333344442 12 33467777788889999999999888773 2 4344456776666555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 625 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
...+...++ |...-.. +--|.-.|+...|..+++....
T Consensus 178 ~~~~~~~e~--------------dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTA--------------PLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGH--------------HHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccH--------------HHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 554432211 1111111 2245667788888877766554
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.91 E-value=1.2e+02 Score=32.59 Aligned_cols=327 Identities=11% Similarity=0.075 Sum_probs=142.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD-STIATLSVEC 373 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~ 373 (764)
.|..... ..+.|+++.+..+...+...-+.| -..|..+...+ ......+ +-.-+.+..-.|-. ..-+.-+..+
T Consensus 9 ~~~~a~~-a~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~e---v~~Fl~~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 9 RYAQIKQ-AWDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAVT---VTNFVRANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHHH---HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHHH---HHHHHHHCCCChhHHHHHHHHHHHH
Confidence 4444444 445788887777766654322211 12343333222 1113343 33334443322222 2334566677
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhh
Q 004269 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 453 (764)
.+.+++.....++.. ... +...-.....+....|+..+|......+=..-.........++..+...|.+.... .+.
T Consensus 83 ~~~~~w~~~l~~~~~-~p~-~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~-~~~ 159 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-KPG-TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA-YLE 159 (618)
T ss_dssp HHTTCHHHHHHHCCS-CCS-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH-HHH
T ss_pred HhCCCHHHHHHhccC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHH-HHH
Confidence 778888877776654 211 44444556677778888777777666655411222334555565555433321110 000
Q ss_pred hhhhHHHH--HHHHHHHHHCCCCccHH-HHHHHHHHHHhcCcHHHHHHHHHhcCCCCChh---hHHHHHHHHHHcCChHH
Q 004269 454 QVDSAKRI--NAIEMDMARNNIQHSHI-SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527 (764)
Q Consensus 454 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~ 527 (764)
++...-.. ......+.. .+.++.. ....++..+.+-..+.. ..... .++.. .+...+.-+.+ .+.+.
T Consensus 160 R~~~al~~~~~~~a~~l~~-~l~~~~~~~a~~~~al~~~p~~~~~---~~~~~--~~~~~~~~~~~~~~~rlar-~d~~~ 232 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAG-QMPADYQTIASAIISLANNPNTVLT---FARTT--GATDFTRQMAAVAFASVAR-QDAEN 232 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TCCGGGHHHHHHHHHHHHCGGGHHH---HHHHS--CCCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred HHHHHHHCCCHHHHHHHHH-hCCHHHHHHHHHHHHHHhChHhHHH---HHhcc--CCChhhHHHHHHHHHHHHh-cCHHH
Confidence 00000000 000001111 1112211 11222222222222211 11111 11111 11112223333 36677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH----HhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004269 528 AMEIFKQMKTCGIPPNAATYNIMIDCC----SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603 (764)
Q Consensus 528 A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (764)
|..+|....... ..+......+-... ...+...++...+....... ++.....-.+....+.|+++.|...|+
T Consensus 233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~ 309 (618)
T 1qsa_A 233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLA 309 (618)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777765433 22333322222222 22332445555665544432 233223333344446678888888777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004269 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 604 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
.|..... ....-.-=+..++...|+.++|..+|+.+.
T Consensus 310 ~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 310 RLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7653211 112212223345566777777877777775
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.79 E-value=29 Score=40.77 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=56.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS----HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 370 (764)
-|..++..+-+.+.++.++++-....+....-+. ..|..+++++...|++++|...+-.+.....+ ......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 5666777777777777777777666553211111 14666777788888888888777777665443 45566677
Q ss_pred HHHHhcCCHHHHH
Q 004269 371 VECSKALELDLAE 383 (764)
Q Consensus 371 ~~~~~~g~~~~a~ 383 (764)
...+..|.++.-.
T Consensus 979 ~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 979 NQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHCCHHHHH
T ss_pred HHHHhCCChhhhh
Confidence 7677766655443
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.60 E-value=32 Score=26.17 Aligned_cols=78 Identities=17% Similarity=0.050 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004269 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (764)
..++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.+ .-||...|-+|-. .+.|.-+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555555432 1111111222344566666666665544 3566666655433 35566666666555
Q ss_pred HHHHCC
Q 004269 604 LVSLEG 609 (764)
Q Consensus 604 ~m~~~~ 609 (764)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555443
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=69.86 E-value=31 Score=29.31 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhh
Q 004269 653 HFVFSGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 653 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
.-+-.+|.+.|++++|+.+++.++.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 335558899999999999998665443
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.38 E-value=57 Score=30.38 Aligned_cols=83 Identities=8% Similarity=0.063 Sum_probs=47.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC-CCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 004269 300 IHACGRTQNSGLAEQLMLQMQSL-GLQPSS---HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST--IATLSVEC 373 (764)
Q Consensus 300 i~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~ 373 (764)
+...+..|+.+-+ +.+.+. |..++. ...+.+.. .+..++.....++.+.+.+.|..++... -.+.+...
T Consensus 152 L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 152 LMDAAEKGHVEVL----KILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHTCHHHH----HHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHH----HHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 3344456666544 444443 544443 23344444 3455666666778888888887665432 22455666
Q ss_pred HhcCCHHHHHHHHH
Q 004269 374 SKALELDLAEALLD 387 (764)
Q Consensus 374 ~~~g~~~~a~~~~~ 387 (764)
++.|+.+.+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 77888887777766
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.78 E-value=26 Score=35.69 Aligned_cols=97 Identities=10% Similarity=-0.072 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhCChhHHHHHHHHHHHC---CCCCCHHHH--H
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN--AATYNIMIDCCSIIRCFKSASALVSMMVRD---GFYPQTMTY--T 583 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~p~~~~~--~ 583 (764)
++..+..-|.+.|+.+.|.+.|.++...-..+. ...+-.+++.+...+++..+...+.++... +-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 667788889999999999999999887533332 345677788888889999999888877643 322332211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
.-...+...+++.+|.+.|-....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 122223456788888888777654
No 262
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=66.69 E-value=71 Score=30.91 Aligned_cols=57 Identities=11% Similarity=0.211 Sum_probs=32.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004269 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH----TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 297 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 362 (764)
++.+...++.|+.+.+..++ +.|..||.. -++.|.. .+..|+.+ +.+.+.+.|..++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~-A~~~g~~~----iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHN-AVQMSRED----IVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHH-HHHTTCHH----HHHHHHHTTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHH-HHHcCCHH----HHHHHHHcCCchh
Confidence 45566667889987655544 457666543 2344444 44566655 4445556665443
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.44 E-value=30 Score=26.27 Aligned_cols=78 Identities=17% Similarity=0.054 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004269 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (764)
..++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.+ .-||...|-+|-. .+.|.-+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554432 1111111122344556666666555443 3456665554432 35555555555555
Q ss_pred HHHHCC
Q 004269 604 LVSLEG 609 (764)
Q Consensus 604 ~m~~~~ 609 (764)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555443
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.37 E-value=98 Score=29.64 Aligned_cols=172 Identities=10% Similarity=0.089 Sum_probs=104.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 004269 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME----IFKQMKTCGIPPNAATYNIMI 551 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----l~~~m~~~g~~p~~~t~~~ll 551 (764)
-...|.++..-|.+.+++++|..++... ...+.++|+...|-+ +.+-..+.+++++......++
T Consensus 32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 32 AHQTLRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3556777888888999999998886442 234455676655544 355556678888888888887
Q ss_pred HHHHhhCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 552 DCCSIIRCFK-SASALVSMMVR----DG--FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624 (764)
Q Consensus 552 ~~~~~~g~~~-~a~~~~~~~~~----~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 624 (764)
..+.....-+ .=.++++.+.+ .| ..-++.....+...|.+.|++.+|...|-. |-.-|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 7766533211 22344444442 22 223677788888888888888888876642 2111355565555555
Q ss_pred HHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 625 CEK---GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 625 ~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
... |...++--++-+ .+--|.-.|+...|..+++....+
T Consensus 176 ~~~~~~~~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTTCCCHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444 333332111111 122455678888888888876544
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.61 E-value=56 Score=26.55 Aligned_cols=74 Identities=7% Similarity=-0.026 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 575 FYPQTMTYTALIKILLDYGD---FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 575 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
-.|++.+--.+..+++++.. ..+++.+++.+...+-.-....+--|.-|+.+.|++++|.+..+.+++ ..|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 34555555555666666654 345667777666543111233444455577788888888888887774 566654
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.39 E-value=47 Score=25.29 Aligned_cols=80 Identities=14% Similarity=0.008 Sum_probs=52.7
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
....++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+... .||...|-+|-. .+.|-.+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHH
Confidence 3456777777777766653 33333344556778888888888776443 578777776644 46677777777
Q ss_pred HHHHHhhcC
Q 004269 180 CLDLMDSRM 188 (764)
Q Consensus 180 ~~~~m~~~g 188 (764)
-+..+...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 776776654
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.13 E-value=64 Score=28.44 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004269 593 GDFDEALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 648 (764)
+...++.++|..|..+|+--. +..|......+...|++++|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 335566666666655554432 33455555555556666666666666655555553
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.93 E-value=37 Score=34.62 Aligned_cols=26 Identities=0% Similarity=-0.130 Sum_probs=14.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
.+-.+|+.+...+++..+...+.+..
T Consensus 170 ~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 170 VMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44455555555566655555555543
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.28 E-value=53 Score=32.24 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=18.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
....+|.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34566777777888888888887763
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=56.85 E-value=82 Score=25.96 Aligned_cols=66 Identities=8% Similarity=-0.042 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 611 PHDVLLYNTILKKACEKGRI---DVIEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.|+..+--.+.+++.+..+. .+++.+++.+...+-. +.. ..+.|.-++.+.|++++|+++.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555566666665543 4566666666653211 233 333333477777777777777775543
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=56.28 E-value=84 Score=25.90 Aligned_cols=73 Identities=7% Similarity=-0.009 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 576 YPQTMTYTALIKILLDYGD---FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 576 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
.|+..+--.+..+++++.. ..+++.+++.+...+-.-.....--|.-++.+.|++++|.+..+.+++ ..|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 4566655556666776654 345667777766532111222333455577888888888888888885 567654
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.05 E-value=86 Score=27.63 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004269 558 RCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612 (764)
Q Consensus 558 g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 612 (764)
+.......+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 336677777777777665443 4456666777777788888888887777666666
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.48 E-value=42 Score=30.45 Aligned_cols=18 Identities=6% Similarity=-0.022 Sum_probs=8.2
Q ss_pred CCChhHHHHHHHHHHHcC
Q 004269 100 SPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~ 117 (764)
.|+.+.+..+++.+.+.|
T Consensus 19 ~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 344544444444444433
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.29 E-value=45 Score=30.11 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=7.9
Q ss_pred HHccCCHHHHHHHHH
Q 004269 132 LCKGGYLEEASNLIY 146 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~ 146 (764)
.++.|+.+....+++
T Consensus 16 A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 16 ATQYGIYERCRELVE 30 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHH
Confidence 345566655555544
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=51.24 E-value=2.6e+02 Score=30.09 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=12.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC
Q 004269 339 VSDRGLRNGMEVLKIMQQNNLKP 361 (764)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~ 361 (764)
...|+++.|++.++. .++-|
T Consensus 549 ~~~g~~~~AL~~i~~---L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMEL---LDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHH---TSCSC
T ss_pred HHcCCHHHHHHHHHh---CCCCC
Confidence 467788888766555 34555
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.18 E-value=1.4e+02 Score=27.83 Aligned_cols=12 Identities=8% Similarity=-0.241 Sum_probs=5.0
Q ss_pred HccCCHHHHHHH
Q 004269 133 CKGGYLEEASNL 144 (764)
Q Consensus 133 ~~~g~~~~A~~~ 144 (764)
+..|+.+-+..+
T Consensus 70 ~~~g~~~~v~~L 81 (285)
T 3kea_A 70 ATLEDTKIVKIL 81 (285)
T ss_dssp TTSSSCHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 344444443333
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.51 E-value=2.7e+02 Score=30.01 Aligned_cols=84 Identities=12% Similarity=0.223 Sum_probs=46.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcC---------------C-HHHHHHHHHHHHHC-----C
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKG---------------R-IDVIEFIIEQMHQN-----K 644 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g---------------~-~~~a~~~~~~m~~~-----~ 644 (764)
-+...|++++|..+|.-.. ..|. .+.|.++.-....- + ...|.++.+..... .
T Consensus 452 ~ae~~G~~~dAi~LY~La~----~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~ 527 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAE----EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQ 527 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHhc----CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhh
Confidence 4446677777777777642 2222 23344433333211 1 23455555543322 2
Q ss_pred CCC-CHHHHHHHHH-----HHHhcCChHHHHHHHHHH
Q 004269 645 VQP-DPSTCHFVFS-----GYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 645 ~~p-~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~ 675 (764)
+.+ +..|+..|+. .+.+.|+|+.|++.++++
T Consensus 528 ~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 528 IHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 222 4456666654 347899999999988865
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.83 E-value=58 Score=29.43 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=7.1
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
+.|+.+.+..+++.+.+
T Consensus 18 ~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 34444444444443333
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.81 E-value=2e+02 Score=28.10 Aligned_cols=210 Identities=10% Similarity=-0.025 Sum_probs=105.2
Q ss_pred hhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCC--hhHHHHHHHHHHHcCccccHHHH
Q 004269 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD--PLFVMETWRMMEEKEIGLNNKCY 125 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~ 125 (764)
++........+|..|...++.++|...++++.... ........++......++ -+.+-.++..+.. ++-+.....
T Consensus 50 ~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~--~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~ 126 (358)
T 3eiq_C 50 ETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVE 126 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCG--GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCch--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 34555666778999999999999999999986432 122223333433332222 2335555555553 444444444
Q ss_pred HHHHHHHHccCCH----HHHHH----HHHHHhhhcCCCCChhhhHHHHHHHhccC--CHHHHHHHHH------HHhh-c-
Q 004269 126 LLMMQALCKGGYL----EEASN----LIYFLGERYGIYPILPVYNSFLGACAKLH--SMVHANLCLD------LMDS-R- 187 (764)
Q Consensus 126 ~~li~~~~~~g~~----~~A~~----~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~------~m~~-~- 187 (764)
......+....+. ..|.. ++.++.....++|.... ......-+..| -+..|..++. .+.+ .
T Consensus 127 ~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~-~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG 205 (358)
T 3eiq_C 127 KSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID-SYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWG 205 (358)
T ss_dssp HHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTG-GGC---CCHHHHHHHHHHHHHHTC---------CCC
T ss_pred HHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHH-HHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcC
Confidence 4444444333221 12222 22333322334443221 11100000000 0111221111 0111 0
Q ss_pred ---CCCCC---hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC--CHHHHHHHHHHHHHhhcc
Q 004269 188 ---MVGKN---EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR--DLKSAYETLQHMVALAMM 259 (764)
Q Consensus 188 ---g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~ 259 (764)
|..|. ......+|.-|...++.++|.+.++++.........+...+..+.-+.+ ..+...+++..+...|+-
T Consensus 206 ~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 206 SGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 11222 1235778889999999999999999986432223445555555665544 345677888888876654
Q ss_pred Cc
Q 004269 260 GK 261 (764)
Q Consensus 260 ~~ 261 (764)
+.
T Consensus 286 s~ 287 (358)
T 3eiq_C 286 TI 287 (358)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.46 E-value=1.7e+02 Score=27.89 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCC--HHHHHHHHHHHhc-cCCCC
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDK--PERAIKIFAKMRQ-KLRPD 428 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~--~~~a~~l~~~m~~-~~~p~ 428 (764)
...++.-|...|+.++|.+.++++.... ...+..++..++-+.++ .+....++..+.. |+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 3477888888899999999999986432 33344455556665433 4556788888876 54443
No 281
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.51 E-value=2e+02 Score=27.48 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=27.8
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChh----cHHHHHHHhhCCCChhHHHHHHHHHHHcCccc
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGAD----DFFHILNYCARSPDPLFVMETWRMMEEKEIGL 120 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 120 (764)
.+...++.|+.+-+..+++. |..++.. -+.. |...+..|+.+ +.+.+++.|..+
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~Tp-Lh~A~~~g~~~----iv~~Ll~~ga~~ 85 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADP 85 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCH-HHHHHHcCCHH----HHHHHHHcCCch
Confidence 35556788888776666654 3333321 1223 33334556654 444455555444
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.92 E-value=1.2e+02 Score=30.72 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=8.5
Q ss_pred HHHHhcCCHHHHHHHHH
Q 004269 371 VECSKALELDLAEALLD 387 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~ 387 (764)
...+..|..+.+..+++
T Consensus 250 ~~A~~~g~~~~v~~Ll~ 266 (437)
T 1n11_A 250 HLAAQEGHAEMVALLLS 266 (437)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHh
Confidence 34445566555544443
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.37 E-value=1.7e+02 Score=30.29 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=12.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m 148 (764)
.+|.+++.|...+.++.|..+....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4444444455455555555544443
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.90 E-value=70 Score=27.83 Aligned_cols=14 Identities=0% Similarity=0.064 Sum_probs=7.7
Q ss_pred HccCCHHHHHHHHH
Q 004269 133 CKGGYLEEASNLIY 146 (764)
Q Consensus 133 ~~~g~~~~A~~~~~ 146 (764)
+..|+.+....+++
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44566665555554
No 285
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=44.69 E-value=1e+02 Score=23.49 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=35.6
Q ss_pred HHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 004269 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547 (764)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~ 547 (764)
+..+...|++++|..+.+.. ..||...|-++-. .+.|..+++..-+.++..+| .|....|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~-c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGN-PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTC-CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCC-CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34456667777777666555 3667776666543 35566666666666666665 3444444
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.36 E-value=1.1e+02 Score=27.90 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=23.4
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.++.......+..+.+.|+-+.|..+|-+...
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 45556666667778888888888888877654
No 287
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.31 E-value=73 Score=28.69 Aligned_cols=12 Identities=0% Similarity=-0.233 Sum_probs=5.2
Q ss_pred HHHHHHCCCCCC
Q 004269 316 MLQMQSLGLQPS 327 (764)
Q Consensus 316 ~~~m~~~g~~p~ 327 (764)
++.+.+.|..++
T Consensus 160 ~~~Ll~~g~~~~ 171 (237)
T 3b7b_A 160 AEILLAAKCDLH 171 (237)
T ss_dssp HHHHHTTTCCTT
T ss_pred HHHHHHcCCCCC
Confidence 334444454443
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.68 E-value=1.8e+02 Score=27.20 Aligned_cols=6 Identities=0% Similarity=-0.147 Sum_probs=2.5
Q ss_pred ccCCHH
Q 004269 170 KLHSMV 175 (764)
Q Consensus 170 ~~g~~~ 175 (764)
..|+.+
T Consensus 40 ~~g~~~ 45 (285)
T 3kea_A 40 ADNNVR 45 (285)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 344443
No 289
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=39.92 E-value=1.4e+02 Score=25.73 Aligned_cols=104 Identities=8% Similarity=-0.042 Sum_probs=54.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH-ccCCHH
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG-RTQNSG 310 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~ 310 (764)
+.+...+..|+.+.-.++.+.+.+.|..++.... .-++.|..++. ...+..
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~----------------------------~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTK----------------------------EGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT----------------------------TCCCTHHHHHHHCTTCHH
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC----------------------------CCCcHHHHHHHcCCcchh
Confidence 3445556667776666777778888877765211 11222222221 223344
Q ss_pred HHHHHHHHHHHCCCCCCccc---HHHHHHHHHhcCCh-hHHHHHHHHHHH-CCCCCCH
Q 004269 311 LAEQLMLQMQSLGLQPSSHT---YDGFIRAIVSDRGL-RNGMEVLKIMQQ-NNLKPQD 363 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~-~~a~~~~~~~~~-~~~~~~~ 363 (764)
...++.+.+.+.|..++... .++.+...+..+.. ..-..+++.+.+ .|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp HHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred hHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence 55677777888887766543 21223322233322 334456666666 6665543
No 290
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.81 E-value=1.4e+02 Score=26.58 Aligned_cols=19 Identities=5% Similarity=-0.200 Sum_probs=10.3
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 004269 165 LGACAKLHSMVHANLCLDL 183 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~ 183 (764)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556666655555544
No 291
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=39.18 E-value=4.7e+02 Score=29.56 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=21.8
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
-|..++..+.+.++.+.+.++|..+.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 477778888888899999999888764
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.96 E-value=1.8e+02 Score=24.65 Aligned_cols=41 Identities=10% Similarity=-0.087 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 004269 633 IEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
...+|..|..+|+--... .|......+-..|++.+|.++++
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445566666555544433 23333335555566666666665
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.75 E-value=1.5e+02 Score=23.82 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=38.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HHHHHHHHHHHhhcCCC
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MVHANLCLDLMDSRMVG 190 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 190 (764)
...++.-|...|+.++|.+.++++... ......+...+..++=+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p--~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456777788888888888888887421 11122344445555555432 35666777777665544
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.29 E-value=1.2e+02 Score=25.33 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=37.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HHHHHHHHHHHhhcCCC
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MVHANLCLDLMDSRMVG 190 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 190 (764)
..+.++.-|...|+.++|.+.++++... ......+...+..++=+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456777788888888888888887421 11122344445555554322 45566777777665544
No 295
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.06 E-value=2.1e+02 Score=28.73 Aligned_cols=296 Identities=9% Similarity=0.009 Sum_probs=135.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChh--cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGAD--DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALC 133 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~ 133 (764)
+...+..|+.+-+..+++. |..++.. .....|...+..|+.+-+..++ +.|..++. .-. ..+...+
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~-t~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQ-TPLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSC-CHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCC-CHHHHHH
Confidence 4446678887766666654 3223221 1223344444567766554444 44433322 122 2344455
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChh--hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC---ChhhHHHHHHHHHhhcC
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILP--VYNSFLGACAKLHSMVHANLCLDLMDSRMVGK---NEVTYTELLKLAVWQKN 208 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~ 208 (764)
..|+.+-+.-+++. |..++.. ...+.+...++.|+.+.+..+++. +..+ +...++ .+...+..|+
T Consensus 89 ~~g~~~~v~~Ll~~-----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t-~L~~A~~~g~ 158 (437)
T 1n11_A 89 RIGHTNMVKLLLEN-----NANPNLATTAGHTPLHIAAREGHVETVLALLEK----EASQACMTKKGFT-PLHVAAKYGK 158 (437)
T ss_dssp HHTCHHHHHHHHHH-----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCC-HHHHHHHTTC
T ss_pred HCCCHHHHHHHHhC-----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCCC-HHHHHHHcCC
Confidence 67887766655553 2223221 122344555667887766666543 3222 111222 3344556777
Q ss_pred hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcccc
Q 004269 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
.+-+.-+++.-......+..-. +.+...+..|+.+ +++.+.+.|..++....
T Consensus 159 ~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~----------------------- 210 (437)
T 1n11_A 159 VRVAELLLERDAHPNAAGKNGL-TPLHVAVHHNNLD----IVKLLLPRGGSPHSPAW----------------------- 210 (437)
T ss_dssp HHHHHHHHHTTCCTTCCCSSCC-CHHHHHHHTTCHH----HHHHHGGGTCCSCCCCT-----------------------
T ss_pred HHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCCcCC-----------------------
Confidence 7666555543211111111111 2233445566654 34444555554443100
Q ss_pred chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 004269 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 365 (764)
.-+ +.+...+..|+.+- .+.+.+.|..++.. ..+.+ ...+..|+.+-+ +.+.+.|..++...
T Consensus 211 -----~g~-t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~~~~~~~~~ 275 (437)
T 1n11_A 211 -----NGY-TPLHIAAKQNQVEV----ARSLLQYGGSANAESVQGVTPL-HLAAQEGHAEMV----ALLLSKQANGNLGN 275 (437)
T ss_dssp -----TCC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHH----HHHHTTTCCTTCCC
T ss_pred -----CCC-CHHHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHH-HHHHHCCCHHHH----HHHHhcCCCCCCCC
Confidence 011 22334456677654 44444555444432 23333 334456665544 44445554433211
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 366 --IATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 366 --~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
-.+.+...++.|..+-+..+++.-.... +..-++.|.. .+..|+.+-+.-+
T Consensus 276 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~~~~v~~L 330 (437)
T 1n11_A 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV-ASHYGNIKLVKFL 330 (437)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH-HHHSSCSHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHH-HHHcCcHHHHHHH
Confidence 1133445567788777666665422111 2333344433 3455665543333
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.66 E-value=1.8e+02 Score=26.38 Aligned_cols=29 Identities=7% Similarity=0.033 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 647 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
++.......+..+.+.|+-++|.++|=+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34444444556666666666666655443
No 297
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=37.07 E-value=4.1e+02 Score=28.33 Aligned_cols=116 Identities=14% Similarity=-0.022 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH----HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLA----VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
.+.+.|...|....+.. ..+......+-... ...+...++...+..... ...+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 37788888888876543 22333332222222 233424556666665443 2333333444555566789999999
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
..|+.|........ ...--+.+++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~~~~--------------------------------r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKD--------------------------------EWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSH--------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccH--------------------------------hHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988865221111 1233566677888999999999988764
No 298
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=36.77 E-value=58 Score=28.31 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=10.8
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCC
Q 004269 520 VEAQESHRAMEIFKQMKTCGIPPN 543 (764)
Q Consensus 520 ~~~~~~~~A~~l~~~m~~~g~~p~ 543 (764)
+..|+.+.-.++.+-+.+.|..++
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCcchHHHHHHHHHHCCCCCC
Confidence 334444444444444555554443
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.48 E-value=1.4e+02 Score=24.12 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=14.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
..+.++.-|...|+.++|...++++.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 44555555555666666666655554
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.63 E-value=1.9e+02 Score=24.07 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHh
Q 004269 631 DVIEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDL 697 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (764)
+++..+|..|..+|+--... .|......+...|++++|.++++ .|+.........+......|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~----~Gi~~~A~P~~rL~~~~~~F 145 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ----RGIQNQAEPREFLQQQYRLF 145 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHTTCBSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHcCCccHHHHHHHHHHH
Confidence 44889999999998877655 45556668889999999999998 56655554554444444444
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.26 E-value=89 Score=28.06 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHH
Q 004269 631 DVIEFIIEQMHQNKVQPDPST-CHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
+....+|..|..+|+.-.... |......+...|++.+|.++|+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345566666666665544333 3334445556666666666666
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.08 E-value=2e+02 Score=24.02 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004269 598 ALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
+.++|..|..+|+--. +..|..-...+-..|++++|.++++.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555544432 3344445555555566666666666655555555
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.54 E-value=79 Score=28.34 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=5.8
Q ss_pred HHhhCCcchHHHHH
Q 004269 62 ALCRGERSRASHLL 75 (764)
Q Consensus 62 ~~~~~~~~~a~~~~ 75 (764)
.+..|+.+-+..++
T Consensus 16 A~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 16 ATQYGIYERCRELV 29 (240)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHH
Confidence 34444444433333
No 304
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=32.48 E-value=2.1e+02 Score=26.71 Aligned_cols=20 Identities=5% Similarity=-0.243 Sum_probs=0.0
Q ss_pred HHHHHHHccCCHHHHHHHHH
Q 004269 127 LMMQALCKGGYLEEASNLIY 146 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~ 146 (764)
..+...+..|+.++..++..
T Consensus 17 ~~lH~Aa~~g~~~~~~~~~~ 36 (285)
T 3d9h_A 17 RGSHMASMDGKQGGMDGSKP 36 (285)
T ss_dssp --------------------
T ss_pred HHHHHHhhcCCCCCcccCCC
Confidence 34444455565555555433
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.83 E-value=4.5e+02 Score=27.19 Aligned_cols=71 Identities=20% Similarity=0.144 Sum_probs=39.8
Q ss_pred CchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCC-CCCh--hcH-HHHHHHhhCCCChhHHHHHHHHHHHc
Q 004269 46 LNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH-SLGA--DDF-FHILNYCARSPDPLFVMETWRMMEEK 116 (764)
Q Consensus 46 ~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~ 116 (764)
.+++-....++.+++.|...+.++.|..+.++..-... ..+. .+| -.+.+.+.-.+++.+|.+.+....+.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444455566677777777777777777777642110 0111 112 22334555567777777777766653
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.75 E-value=88 Score=26.49 Aligned_cols=71 Identities=7% Similarity=-0.103 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHhhcChh
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
+.+.+-+.+.....|++++. .-..++..+...+..-.|.++++.+.+. ++..+..|...-|..+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444454444455665543 3445666666667777888888888776 66667777666677777666543
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.84 E-value=1.4e+02 Score=24.53 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=41.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004269 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 604 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.+..|..+...|-+.+
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 3556777776542 23344444555666788888888776666677787777777777776543
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.90 E-value=1.4e+02 Score=21.41 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=34.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004269 605 VSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665 (764)
Q Consensus 605 m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 665 (764)
+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|.+..+..+...|.+
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4456666665433 3334444333 3445666777776665555666666666666666643
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.71 E-value=2.6e+02 Score=23.69 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 597 EALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
++.++|..|..+|+--. +..|..-...+-..|++.+|.++|+.-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 36677777877766553 4456666666777888888888888888777777554
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.64 E-value=1.2e+02 Score=25.42 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=16.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
..+.++.-|...|+.++|...++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45566666666666666666666654
No 311
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=29.42 E-value=4.3e+02 Score=26.21 Aligned_cols=91 Identities=10% Similarity=-0.147 Sum_probs=47.2
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCC-----hhcHHHHHHHhhCCCChhHHHHHHHHHHHc--CccccHHHHH----
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLG-----ADDFFHILNYCARSPDPLFVMETWRMMEEK--EIGLNNKCYL---- 126 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~---- 126 (764)
++..|...|++.+|..++..+.+.=...| ...|..-++.|...++...+..++...... .+.+++.+..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 34455567777777776666654211111 123455556666667777777777665542 1222322211
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHH
Q 004269 127 LMMQALC-KGGYLEEASNLIYFL 148 (764)
Q Consensus 127 ~li~~~~-~~g~~~~A~~~~~~m 148 (764)
.-...+. ..+++..|...|-+.
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHH
Confidence 1122234 567777776666544
No 312
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.08 E-value=2.9e+02 Score=24.18 Aligned_cols=37 Identities=5% Similarity=-0.296 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC
Q 004269 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
..+.+.|+-.+.+|.+.| .|....-..++-+...-|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 467777777777787777 6665555555555555444
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.80 E-value=1.5e+02 Score=22.39 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHH
Q 004269 377 LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 377 g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 415 (764)
...+.|.++++.+..+ .+.+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~r-G~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETR-GSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTS-CTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHc-ChHHHHHHHHHHHHcCcHHHHH
Confidence 3567777888877777 6777888888887666655553
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.54 E-value=1.6e+02 Score=24.44 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=41.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004269 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.+..+..+...|-+.+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3455677766543 333445555566667888888888877666788888878888888776543
No 315
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.10 E-value=1.4e+02 Score=24.61 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=41.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004269 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.+..|..+...|-+.+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 34555788877542 22333344445 56788999999887767788888777777777776443
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.76 E-value=4.2e+02 Score=25.19 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS---HTYDGFIRAIVSDRG--LRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 364 (764)
...+.++.-|...|+.++|.+.++++.. |.- .....+..++-+.++ .+....++..+.+.|+-+...
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~----p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCC----GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCC----CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4566788888888999999988888762 311 122222233333222 344666777777666554333
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.26 E-value=1.6e+02 Score=23.84 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=41.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004269 604 LVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 604 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.+..+..+...|-+.+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 35557777775432 3344444444 566788889988887767778887777777777776543
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.97 E-value=1.8e+02 Score=20.76 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=29.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004269 535 MKTCGIPPNAATYNIMIDCCSIIR-CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593 (764)
Q Consensus 535 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 593 (764)
|.+.|++++..-. .++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4455655554432 3444444433 34455666666665554445555555555555544
No 319
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.92 E-value=3.4e+02 Score=23.82 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=26.2
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 004269 515 VLHSLV---EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 515 li~~~~---~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 558 (764)
+|+++. +..+.+.|+-.+-+|.+.| .|.-..=..++-+....|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 444443 3467778888888888877 555444455555554444
No 320
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.86 E-value=3.4e+02 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=10.8
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 004269 129 MQALCKGGYLEEASNLIYF 147 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~ 147 (764)
+...+..|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344556666666666654
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.78 E-value=2.4e+02 Score=22.83 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 592 (764)
..-.|.++++.+.+.+...+..|.---++.+...
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 3444555555554444333433333333333333
No 322
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.60 E-value=3.1e+02 Score=26.47 Aligned_cols=47 Identities=11% Similarity=-0.055 Sum_probs=20.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHH
Q 004269 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTI--ATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~ 388 (764)
.+..|+.+ +.+.+.+.|..++.... .+-+...++.|..+-+.-+++.
T Consensus 218 A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 34555554 33444555655433211 1223333444555555444443
No 323
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.40 E-value=2.7e+02 Score=24.69 Aligned_cols=69 Identities=10% Similarity=-0.038 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCccccHH-------HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH
Q 004269 103 PLFVMETWRMMEEKEIGLNNK-------CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 174 (764)
++.|+.+|+.+.+.-..++.. .-...+..|.+.|.+++|.++|++.... .++..-...-+....+..|.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~---~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK---DPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC---CCCchHHHHHHHHHHhccCc
No 324
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.25 E-value=2.6e+02 Score=24.73 Aligned_cols=177 Identities=12% Similarity=-0.028 Sum_probs=83.6
Q ss_pred HHHHhcCcHHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhh
Q 004269 485 KALGAEGMIRELIQYFCDSKTPL---GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG----IPPNAATYNIMIDCCSII 557 (764)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~ 557 (764)
...++.|+.+.+..+++..+..+ |..-++. +...+..|+.+-+..+++.-.... ...|..-.+.+. ..+..
T Consensus 8 ~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~-~A~~~ 85 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKFEGCEVHQRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH-IAVIN 85 (232)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH-HHHHT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH-HHHHc
Confidence 34456777777777776533332 2223333 334455677666655555422110 001112222333 33445
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 004269 558 RCFKSASALVSMMVRDGFYPQTM----------------TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL--LYNT 619 (764)
Q Consensus 558 g~~~~a~~~~~~~~~~g~~p~~~----------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ 619 (764)
|+.+ +++.+.+.|..++.. ..+.| ...+..|+.+-+.-+ .+.|..++.. .-.+
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~L----l~~ga~~~~~d~~g~t 156 (232)
T 2rfa_A 86 QNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEEIVRLL----IEHGADIRAQDSLGNT 156 (232)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCC
T ss_pred CCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHHHHHHH----HHCCCCCCCCCCCCCC
Confidence 6654 444455555554432 22333 333445665544433 3445544321 1112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHhcCChHHHHHHHH
Q 004269 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPD---------PSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
.+...+..|+.+.+..+++.+.+.|..++ ..-.+ -+..-++.|..+-+.-+++
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHh
Confidence 33344567788777777777777765432 22222 2333445666555544444
No 325
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=24.36 E-value=5.3e+02 Score=25.56 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=45.8
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 004269 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404 (764)
Q Consensus 325 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~ 404 (764)
.|....+..++.++ ..+++.....++..... .+..|......+-..+-+ --...+.++...-..++...+...
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT-----MLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH-----HHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH-----HHHHHHHHHhHhhceeeHHHHHHH
Confidence 45555566666654 55677777666665433 344455432211111100 001112222222255666666665
Q ss_pred HHhcCCHHHHHHHHHHHhc
Q 004269 405 CDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 405 ~~~~~~~~~a~~l~~~m~~ 423 (764)
+.- ..+++...+.+|..
T Consensus 326 l~l--s~~evE~~L~~lI~ 342 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMIL 342 (394)
T ss_dssp HTC--CHHHHHHHHHHHHH
T ss_pred HCc--CHHHHHHHHHHHHH
Confidence 543 67888888888876
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.22 E-value=2e+02 Score=23.56 Aligned_cols=61 Identities=7% Similarity=0.032 Sum_probs=40.9
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004269 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378 (764)
Q Consensus 317 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 378 (764)
+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 446677877665433 4455555666777899999999888777677776555565655553
No 327
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.03 E-value=1.3e+02 Score=27.36 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=17.1
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLG 86 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~ 86 (764)
+...++.|+.+....+++.+...+..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 4455667777777667666655554444
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.91 E-value=2.7e+02 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 596 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3344444444443333333333333334444443
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.77 E-value=1.7e+02 Score=24.25 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=44.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004269 603 DLVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.+..|..+...|-+.+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 345667888776433 3334444444 556799999999887777788888888888888887554
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.54 E-value=3.6e+02 Score=23.55 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 004269 515 VLHSLV---EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 515 li~~~~---~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 558 (764)
+|+++. +..+.+.|+-.+-+|.+.|-.|.-..=..++-+.-..|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 444443 34677888888888888876665555555555554444
No 331
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.43 E-value=89 Score=21.11 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHH-HhcC
Q 004269 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAI-VSDR 342 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~ 342 (764)
.++|.+.|.+|++..-.+...||...|+.+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 357888888887755455777888888887 5443
No 332
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.95 E-value=1.9e+02 Score=25.70 Aligned_cols=111 Identities=10% Similarity=0.008 Sum_probs=53.3
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCccc--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC
Q 004269 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHT--YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST--IATLSVECSKALE 378 (764)
Q Consensus 303 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 378 (764)
.+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++... -.+.+...++.|+
T Consensus 118 A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 189 (237)
T 3b7b_A 118 ATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENR 189 (237)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence 34456554 4445555665554321 112333344556654 4455556665544321 1234455566777
Q ss_pred HHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 379 LDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMR 422 (764)
Q Consensus 379 ~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~ 422 (764)
.+.+.-+++.-.... +..-. +-+......|+...++++.+.+.
T Consensus 190 ~~~v~~Ll~~gad~~~~d~~g~-t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 190 YDCVVLFLSRDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSC-CHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHcCCCCCccCCCCC-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 766555544311110 11112 23344456677777777776664
No 333
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.88 E-value=1.5e+02 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=15.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSL 85 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~ 85 (764)
+...+..|+.+.+..+++.+...+..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344556677776666666655555433
No 334
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.84 E-value=64 Score=21.79 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=17.9
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChh
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILP 159 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~ 159 (764)
.-+++.|...|.++.....++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4578888888888766666777643
No 335
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.80 E-value=1.6e+02 Score=19.82 Aligned_cols=24 Identities=21% Similarity=-0.002 Sum_probs=16.0
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCC
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKN 192 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~ 192 (764)
...|+++.|...|-.|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 345777777777777766665554
No 336
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.69 E-value=1.5e+02 Score=25.62 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=17.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 004269 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 330 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (764)
-.+.+..++........-.++.+.+.+.|..++.
T Consensus 140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 3445554443333233345666677777765543
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.72 E-value=2e+02 Score=24.19 Aligned_cols=52 Identities=8% Similarity=-0.113 Sum_probs=30.2
Q ss_pred hhCCcchHHHHHHhccccCCCC--ChhcHHHHHH-Hh-----hCCCChhHHHHHHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSL--GADDFFHILN-YC-----ARSPDPLFVMETWRMMEE 115 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~m~~ 115 (764)
..|++-+|.++|+.+......+ ....|..||+ +. .+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478888888888777654334 3344555555 11 123666666666666544
No 338
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=21.59 E-value=4.9e+02 Score=24.15 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=31.9
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004269 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
..+.|+++++++....-++.. +-|...-..|+..+|-.|++++|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566666666665555543 23455555666666667777777666666553
No 339
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.39 E-value=3.7e+02 Score=23.62 Aligned_cols=57 Identities=2% Similarity=0.016 Sum_probs=34.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCccc--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004269 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHT--YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (764)
...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++.+.+.|..+
T Consensus 126 ~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 126 SFAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3344556654 4444555676555332 1234455567788888878888888877544
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.05 E-value=2.8e+02 Score=22.71 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 596 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455555555444333344433333344444443
No 341
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.50 E-value=9.4e+02 Score=27.05 Aligned_cols=157 Identities=10% Similarity=0.022 Sum_probs=85.4
Q ss_pred HHHHHhhCCCChh---HHHHHHHHHHHcC----ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004269 92 HILNYCARSPDPL---FVMETWRMMEEKE----IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 92 ~ll~~~~~~~~~~---~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 164 (764)
.++...+..|+.+ .|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~----~~~~ek~~l 764 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA----QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC----CSHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc----CCHHHHHHH
Confidence 3555556666654 5777787776532 455543 33333344567767666677766532 244456778
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc-ChhHHHHHHHH----HHhcCCCCHhhHHHHHHHhhc
Q 004269 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK-NLSAVHEIWED----YIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~----~~~~~~~~~~~~~~li~~~~~ 239 (764)
+.+++...+.....++++.............. .++.+..... ..+.+.+.+.. +.+.+......+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 89998889988888888877654322222222 2333333211 12233333222 222344455567777777665
Q ss_pred cCCHHHHHHHHHHHHH
Q 004269 240 LRDLKSAYETLQHMVA 255 (764)
Q Consensus 240 ~g~~~~A~~~~~~~~~ 255 (764)
.-.-++-.+-++...+
T Consensus 844 ~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 844 RFSSEFELQQLEQFKK 859 (909)
T ss_dssp TCCSHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHh
Confidence 5444444444455443
No 342
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.48 E-value=3.9e+02 Score=25.79 Aligned_cols=183 Identities=10% Similarity=-0.084 Sum_probs=87.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCCh---hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGA---DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 135 (764)
+...+..|+.+-+..+++. |..++. .-.. .|...+..|+.+-+. .+.+.|..++...-...+...+..
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~----g~~~~~~d~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIET----GVSPTIQNRFGCT-ALHLACKFGCVDTAK----YLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCC-HHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc----CCCccccCCCCCc-HHHHHHHcCCHHHHH----HHHHCCCCccccCCCCHHHHHHHc
Confidence 5556778887777666654 322222 2223 333344456665444 444445433332122234445567
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCh--------------------hhhHHHHHHHhccC--CHHHHHHHHHHHhhcCCCCCh
Q 004269 136 GYLEEASNLIYFLGERYGIYPIL--------------------PVYNSFLGACAKLH--SMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~~--------------------~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~ 193 (764)
|+.+-+..+++.... .+..++. .-. +.+...+..| +.+-+..+++ .|..++.
T Consensus 95 g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~----~ga~~~~ 168 (364)
T 3ljn_A 95 NKTDLVVALVEGAKE-RGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQ----LGASPTA 168 (364)
T ss_dssp TCHHHHHHHHHHHHH-HTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHHHHH----HTCCTTC
T ss_pred CCHHHHHHHHHhccc-cCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHHHHH----cCCCCcc
Confidence 888888777776432 2322222 112 3344445566 5544444443 3544433
Q ss_pred h---hHHHHHHHHHhhcChhHHHHHHHHHHh-----cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 194 V---TYTELLKLAVWQKNLSAVHEIWEDYIK-----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 194 ~---t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
. -.+ .+...+..|+.+-+..+++.-.. -...|..-.+ .+...+..|+.+- .+.+.+.|..++.
T Consensus 169 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 169 KDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDV----AMRFVEMGIDVNM 239 (364)
T ss_dssp CCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHH----HHHHHTTTCCTTC
T ss_pred cCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHH----HHHHHHcCCCCCC
Confidence 2 222 33445567777766666654322 1111222222 2334456676654 4445555665543
No 343
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.01 E-value=2.9e+02 Score=20.89 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 565 ALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
++.+++...|+.|+..+..-++..|..
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~~ 56 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCVQ 56 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333333333444444444444443333
Done!