Query 004270
Match_columns 764
No_of_seqs 1200 out of 4478
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 20:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1539 WD repeat protein [Gen 100.0 1E-121 2E-126 920.2 66.1 720 1-735 21-746 (910)
2 KOG0319 WD40-repeat-containing 100.0 6.5E-57 1.4E-61 448.1 47.1 568 24-627 29-617 (775)
3 KOG0291 WD40-repeat-containing 100.0 1.1E-53 2.5E-58 425.1 59.8 525 24-637 65-719 (893)
4 KOG0318 WD40 repeat stress pro 100.0 8.6E-54 1.9E-58 409.2 55.3 512 23-629 68-602 (603)
5 KOG0318 WD40 repeat stress pro 100.0 2.5E-50 5.4E-55 385.6 59.9 527 15-634 18-565 (603)
6 KOG0319 WD40-repeat-containing 100.0 1.4E-51 2.9E-56 410.2 44.4 525 24-586 72-618 (775)
7 KOG0271 Notchless-like WD40 re 100.0 4.7E-53 1E-57 388.2 30.6 365 172-585 106-479 (480)
8 KOG0306 WD40-repeat-containing 100.0 1.8E-50 3.8E-55 402.2 51.0 582 4-628 8-663 (888)
9 KOG0291 WD40-repeat-containing 100.0 1.3E-48 2.9E-53 389.1 59.7 521 25-631 24-614 (893)
10 KOG0271 Notchless-like WD40 re 100.0 1.7E-50 3.6E-55 371.5 28.8 366 130-543 108-479 (480)
11 KOG0306 WD40-repeat-containing 100.0 1.6E-47 3.6E-52 381.1 49.2 482 24-588 75-665 (888)
12 KOG1408 WD40 repeat protein [F 100.0 9.2E-44 2E-48 351.7 44.5 515 25-629 47-713 (1080)
13 KOG0272 U4/U6 small nuclear ri 100.0 1E-44 2.3E-49 338.2 24.4 279 224-627 175-458 (459)
14 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-44 2.6E-49 337.8 23.6 283 179-585 173-458 (459)
15 KOG1063 RNA polymerase II elon 100.0 1.3E-40 2.8E-45 329.5 45.8 546 14-629 13-699 (764)
16 KOG0286 G-protein beta subunit 100.0 7.4E-42 1.6E-46 304.0 33.0 286 174-585 48-343 (343)
17 KOG0276 Vesicle coat complex C 100.0 1.6E-39 3.5E-44 317.5 43.0 471 89-628 9-489 (794)
18 KOG1408 WD40 repeat protein [F 100.0 9.2E-40 2E-44 323.4 38.9 485 24-588 88-714 (1080)
19 KOG0296 Angio-associated migra 100.0 3.4E-40 7.4E-45 302.5 33.1 341 172-587 55-398 (399)
20 KOG0286 G-protein beta subunit 100.0 3.2E-40 6.9E-45 293.6 31.4 290 130-502 48-343 (343)
21 KOG0315 G-protein beta subunit 100.0 1.5E-39 3.3E-44 282.4 31.2 290 237-606 10-308 (311)
22 KOG0273 Beta-transducin family 100.0 1.8E-39 4E-44 307.2 33.5 325 178-629 175-523 (524)
23 KOG2106 Uncharacterized conser 100.0 5.4E-37 1.2E-41 292.6 48.6 518 9-628 59-625 (626)
24 KOG0315 G-protein beta subunit 100.0 5.4E-39 1.2E-43 279.0 31.9 295 194-566 11-309 (311)
25 KOG0279 G protein beta subunit 100.0 7.4E-39 1.6E-43 283.3 32.9 299 87-454 9-313 (315)
26 KOG0279 G protein beta subunit 100.0 8E-38 1.7E-42 276.7 31.9 298 130-504 8-313 (315)
27 KOG1063 RNA polymerase II elon 100.0 3.9E-37 8.5E-42 304.9 39.3 497 58-631 15-650 (764)
28 KOG1539 WD repeat protein [Gen 100.0 1.3E-35 2.7E-40 300.3 49.8 542 8-587 67-648 (910)
29 KOG0273 Beta-transducin family 100.0 1.5E-37 3.3E-42 294.2 31.6 341 85-545 170-523 (524)
30 KOG0296 Angio-associated migra 100.0 1.1E-36 2.4E-41 279.5 33.1 340 130-545 57-398 (399)
31 KOG2048 WD40 repeat protein [G 100.0 2.3E-34 5E-39 285.1 52.0 543 54-634 23-606 (691)
32 KOG0292 Vesicle coat complex C 100.0 3.1E-35 6.6E-40 298.5 43.9 500 55-617 8-547 (1202)
33 KOG0276 Vesicle coat complex C 100.0 2.6E-35 5.5E-40 288.2 41.6 463 53-585 10-488 (794)
34 KOG0645 WD40 repeat protein [G 100.0 1.1E-35 2.4E-40 262.0 33.8 293 172-587 5-311 (312)
35 KOG0295 WD40 repeat-containing 100.0 7.6E-37 1.6E-41 280.3 26.4 289 259-628 100-405 (406)
36 KOG0263 Transcription initiati 100.0 4.6E-37 9.9E-42 310.5 26.9 281 172-588 369-650 (707)
37 KOG0295 WD40 repeat-containing 100.0 8.9E-37 1.9E-41 279.9 25.7 307 170-586 97-405 (406)
38 KOG2106 Uncharacterized conser 100.0 2.9E-34 6.4E-39 273.9 41.4 468 23-586 113-625 (626)
39 KOG0263 Transcription initiati 100.0 3E-37 6.5E-42 311.9 22.1 283 215-634 370-654 (707)
40 KOG0284 Polyadenylation factor 100.0 8.9E-37 1.9E-41 283.8 21.5 280 224-629 96-380 (464)
41 KOG0285 Pleiotropic regulator 100.0 9.9E-36 2.2E-40 271.9 25.0 284 221-631 148-441 (460)
42 KOG0265 U5 snRNP-specific prot 100.0 4.8E-35 1E-39 261.8 27.8 282 221-585 44-336 (338)
43 KOG0293 WD40 repeat-containing 100.0 8.7E-36 1.9E-40 277.3 23.3 290 262-629 219-513 (519)
44 KOG0292 Vesicle coat complex C 100.0 6.7E-34 1.4E-38 288.9 38.3 408 136-628 8-517 (1202)
45 KOG0645 WD40 repeat protein [G 100.0 7.8E-34 1.7E-38 250.4 32.7 294 130-504 7-311 (312)
46 KOG0293 WD40 repeat-containing 100.0 5.1E-35 1.1E-39 272.2 24.7 295 172-588 215-514 (519)
47 KOG0284 Polyadenylation factor 100.0 4.8E-36 1E-40 279.0 17.7 283 138-504 97-380 (464)
48 KOG0285 Pleiotropic regulator 100.0 1.2E-34 2.7E-39 264.8 24.8 295 86-455 144-440 (460)
49 KOG0265 U5 snRNP-specific prot 100.0 3.5E-34 7.7E-39 256.3 26.3 298 127-501 37-335 (338)
50 KOG0282 mRNA splicing factor [ 100.0 2.3E-35 5E-40 280.8 18.2 288 258-627 205-503 (503)
51 cd00200 WD40 WD40 domain, foun 100.0 5.7E-33 1.2E-37 280.1 36.4 286 175-585 3-289 (289)
52 KOG2048 WD40 repeat protein [G 100.0 1.2E-30 2.7E-35 258.8 50.6 499 92-628 24-547 (691)
53 KOG0278 Serine/threonine kinas 100.0 1.7E-34 3.7E-39 251.1 18.6 290 175-591 8-301 (334)
54 KOG0282 mRNA splicing factor [ 100.0 1.3E-34 2.9E-39 275.6 18.5 290 171-585 204-503 (503)
55 KOG0316 Conserved WD40 repeat- 100.0 9.1E-33 2E-37 238.3 25.5 284 217-628 11-298 (307)
56 cd00200 WD40 WD40 domain, foun 100.0 5.1E-32 1.1E-36 273.2 35.5 285 261-627 3-289 (289)
57 KOG0266 WD40 repeat-containing 100.0 1.5E-32 3.2E-37 288.7 32.1 290 217-587 152-454 (456)
58 KOG0281 Beta-TrCP (transducin 100.0 2.1E-34 4.6E-39 262.1 15.5 270 224-629 197-477 (499)
59 KOG0313 Microtubule binding pr 100.0 1.9E-32 4.1E-37 252.9 27.7 306 224-630 105-419 (423)
60 KOG0316 Conserved WD40 repeat- 100.0 2.9E-32 6.3E-37 235.2 27.0 285 173-585 9-297 (307)
61 KOG0281 Beta-TrCP (transducin 100.0 3.7E-34 8.1E-39 260.5 15.2 287 180-592 196-482 (499)
62 PLN00181 protein SPA1-RELATED; 100.0 1.8E-31 3.9E-36 302.9 40.0 301 160-586 457-792 (793)
63 KOG0266 WD40 repeat-containing 100.0 5.3E-32 1.1E-36 284.5 31.9 288 137-504 159-454 (456)
64 KOG1407 WD40 repeat protein [F 100.0 1.2E-31 2.7E-36 235.1 26.3 276 266-621 18-295 (313)
65 PLN00181 protein SPA1-RELATED; 100.0 7.4E-31 1.6E-35 297.9 39.3 303 246-628 457-792 (793)
66 KOG0275 Conserved WD40 repeat- 100.0 3.1E-33 6.7E-38 252.1 15.4 291 130-502 205-507 (508)
67 KOG0643 Translation initiation 100.0 8.6E-32 1.9E-36 236.8 23.4 292 176-588 5-318 (327)
68 KOG0275 Conserved WD40 repeat- 100.0 9.8E-33 2.1E-37 248.9 17.9 284 180-585 212-507 (508)
69 KOG0643 Translation initiation 100.0 1.4E-30 3.1E-35 229.2 25.4 233 89-335 6-252 (327)
70 KOG0278 Serine/threonine kinas 100.0 2.3E-31 4.9E-36 231.7 19.5 281 266-629 12-297 (334)
71 KOG0313 Microtubule binding pr 100.0 6.9E-30 1.5E-34 236.0 26.6 279 54-343 103-417 (423)
72 KOG0310 Conserved WD40 repeat- 100.0 3.7E-30 8E-35 246.0 24.8 276 224-625 26-305 (487)
73 KOG0640 mRNA cleavage stimulat 100.0 2.4E-30 5.3E-35 232.3 21.9 291 221-587 109-426 (430)
74 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-28 4.1E-33 222.4 33.0 287 217-587 8-303 (311)
75 KOG0305 Anaphase promoting com 100.0 1.5E-29 3.3E-34 252.4 28.0 278 185-589 181-463 (484)
76 KOG0288 WD40 repeat protein Ti 100.0 1.3E-30 2.8E-35 243.4 18.8 285 260-627 168-459 (459)
77 KOG0288 WD40 repeat protein Ti 100.0 8E-31 1.7E-35 244.8 17.1 276 223-584 174-458 (459)
78 KOG1407 WD40 repeat protein [F 100.0 5.3E-29 1.2E-33 218.7 26.7 279 175-536 14-293 (313)
79 KOG0310 Conserved WD40 repeat- 100.0 1.2E-29 2.7E-34 242.4 24.7 279 181-544 26-308 (487)
80 KOG0305 Anaphase promoting com 100.0 3.5E-29 7.6E-34 249.9 27.2 269 152-506 189-463 (484)
81 KOG0283 WD40 repeat-containing 100.0 2.5E-29 5.4E-34 257.2 23.8 300 170-548 255-579 (712)
82 KOG0646 WD40 repeat protein [G 100.0 6E-29 1.3E-33 236.4 23.0 317 203-634 18-355 (476)
83 KOG0772 Uncharacterized conser 100.0 5.9E-29 1.3E-33 238.5 22.8 302 217-587 161-487 (641)
84 KOG0640 mRNA cleavage stimulat 100.0 9.4E-29 2E-33 222.1 22.7 292 266-629 110-426 (430)
85 KOG0274 Cdc4 and related F-box 100.0 3.1E-28 6.7E-33 253.8 30.1 281 180-595 207-490 (537)
86 KOG1446 Histone H3 (Lys4) meth 100.0 4.1E-27 8.8E-32 213.7 33.1 295 171-544 4-302 (311)
87 KOG1445 Tumor-specific antigen 100.0 1.9E-27 4.1E-32 233.4 32.9 535 85-630 71-799 (1012)
88 KOG0289 mRNA splicing factor [ 100.0 3E-28 6.6E-33 228.9 26.3 282 225-586 220-505 (506)
89 KOG0300 WD40 repeat-containing 100.0 1.1E-28 2.4E-33 222.2 21.7 307 152-589 125-478 (481)
90 KOG0294 WD40 repeat-containing 100.0 1.3E-27 2.7E-32 215.9 28.0 264 196-589 4-283 (362)
91 KOG0973 Histone transcription 100.0 2.8E-28 6.1E-33 256.0 27.4 304 267-629 12-355 (942)
92 KOG0274 Cdc4 and related F-box 100.0 8.2E-28 1.8E-32 250.6 30.6 272 152-557 219-494 (537)
93 KOG0283 WD40 repeat-containing 100.0 1.9E-28 4E-33 250.8 24.7 299 312-630 265-577 (712)
94 KOG2055 WD40 repeat protein [G 100.0 3.4E-28 7.5E-33 230.5 24.2 284 268-629 213-512 (514)
95 KOG0268 Sof1-like rRNA process 100.0 3.6E-29 7.8E-34 229.8 16.2 292 86-462 59-353 (433)
96 KOG0268 Sof1-like rRNA process 100.0 5.4E-29 1.2E-33 228.6 15.4 286 174-548 59-348 (433)
97 KOG0299 U3 snoRNP-associated p 100.0 1.5E-27 3.2E-32 226.4 25.6 285 174-534 135-444 (479)
98 KOG0973 Histone transcription 100.0 8.3E-28 1.8E-32 252.5 26.4 291 180-547 12-357 (942)
99 KOG0277 Peroxisomal targeting 100.0 6.1E-28 1.3E-32 211.1 20.7 259 76-343 39-308 (311)
100 KOG0647 mRNA export protein (c 100.0 3.6E-27 7.8E-32 211.7 26.1 278 217-576 20-312 (347)
101 KOG0289 mRNA splicing factor [ 100.0 2.5E-27 5.4E-32 222.8 26.1 279 142-503 224-505 (506)
102 KOG0308 Conserved WD40 repeat- 100.0 1.5E-28 3.4E-33 242.4 18.9 352 102-554 36-402 (735)
103 KOG0772 Uncharacterized conser 100.0 2.3E-27 4.9E-32 227.7 24.8 301 173-543 159-485 (641)
104 KOG0647 mRNA export protein (c 100.0 5.6E-27 1.2E-31 210.4 25.3 280 179-534 25-312 (347)
105 KOG0646 WD40 repeat protein [G 100.0 1.8E-27 3.8E-32 226.4 22.9 293 161-526 18-330 (476)
106 KOG0308 Conserved WD40 repeat- 100.0 5.7E-28 1.2E-32 238.4 20.1 341 191-628 35-392 (735)
107 PTZ00421 coronin; Provisional 100.0 8.4E-26 1.8E-30 235.8 37.3 164 176-345 70-246 (493)
108 KOG1036 Mitotic spindle checkp 100.0 1.9E-26 4E-31 208.2 27.4 274 218-577 7-294 (323)
109 KOG0299 U3 snoRNP-associated p 100.0 1.6E-26 3.5E-31 219.4 27.8 285 221-629 139-457 (479)
110 KOG0641 WD40 repeat protein [G 100.0 3.3E-25 7.1E-30 190.4 33.2 297 173-545 25-349 (350)
111 KOG0294 WD40 repeat-containing 100.0 8.5E-27 1.8E-31 210.5 23.8 246 87-347 37-284 (362)
112 KOG0639 Transducin-like enhanc 100.0 1.8E-27 3.8E-32 227.5 20.4 285 266-628 417-703 (705)
113 KOG0301 Phospholipase A2-activ 100.0 7.8E-27 1.7E-31 232.3 24.7 241 86-344 7-249 (745)
114 KOG2096 WD40 repeat protein [G 100.0 2.9E-26 6.3E-31 207.1 26.0 292 222-585 84-400 (420)
115 KOG0300 WD40 repeat-containing 100.0 6.7E-27 1.4E-31 210.8 21.6 296 130-506 141-478 (481)
116 PTZ00420 coronin; Provisional 100.0 1.3E-25 2.9E-30 234.8 34.7 250 157-486 50-318 (568)
117 KOG0641 WD40 repeat protein [G 100.0 4.5E-25 9.7E-30 189.5 31.6 290 267-629 31-349 (350)
118 KOG0277 Peroxisomal targeting 100.0 4.4E-27 9.5E-32 205.8 19.4 255 35-296 37-307 (311)
119 PTZ00421 coronin; Provisional 100.0 1.7E-25 3.6E-30 233.6 34.3 233 88-325 70-314 (493)
120 KOG0301 Phospholipase A2-activ 100.0 4.2E-26 9.2E-31 227.1 28.2 283 171-588 4-289 (745)
121 KOG1273 WD40 repeat protein [G 100.0 1.7E-26 3.7E-31 208.3 22.3 280 227-629 26-322 (405)
122 KOG1274 WD40 repeat protein [G 100.0 2.2E-25 4.7E-30 229.3 32.8 277 265-626 10-297 (933)
123 KOG0639 Transducin-like enhanc 99.9 1.3E-26 2.8E-31 221.6 21.1 282 179-544 417-703 (705)
124 KOG2096 WD40 repeat protein [G 99.9 1.5E-25 3.3E-30 202.5 26.2 209 87-300 80-310 (420)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-24 4.2E-29 219.4 36.6 284 239-608 3-300 (300)
126 KOG1036 Mitotic spindle checkp 99.9 3.8E-25 8.1E-30 199.8 25.9 276 181-535 13-294 (323)
127 PTZ00420 coronin; Provisional 99.9 1.6E-24 3.4E-29 226.8 34.8 228 109-346 50-295 (568)
128 KOG1445 Tumor-specific antigen 99.9 8.8E-25 1.9E-29 214.8 29.7 169 172-345 70-249 (1012)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.5E-24 9.8E-29 216.7 36.0 294 152-525 2-300 (300)
130 KOG0650 WD40 repeat nucleolar 99.9 6.3E-25 1.4E-29 214.9 26.6 319 173-584 392-732 (733)
131 KOG1963 WD40 repeat protein [G 99.9 5.6E-23 1.2E-27 211.5 39.4 494 63-630 23-584 (792)
132 KOG4283 Transcription-coupled 99.9 2.4E-24 5.2E-29 192.6 25.5 298 178-586 40-364 (397)
133 KOG1332 Vesicle coat complex C 99.9 5.8E-25 1.2E-29 191.5 20.4 237 150-454 22-286 (299)
134 KOG1332 Vesicle coat complex C 99.9 3.9E-25 8.5E-30 192.5 18.0 254 89-345 7-287 (299)
135 KOG2055 WD40 repeat protein [G 99.9 6.1E-24 1.3E-28 201.9 25.5 290 92-454 212-512 (514)
136 KOG0264 Nucleosome remodeling 99.9 3E-24 6.4E-29 204.4 23.3 254 89-345 120-405 (422)
137 KOG1273 WD40 repeat protein [G 99.9 9.4E-24 2E-28 190.7 23.0 282 184-587 26-322 (405)
138 KOG1963 WD40 repeat protein [G 99.9 1.7E-21 3.8E-26 200.6 42.7 449 101-630 26-539 (792)
139 KOG4283 Transcription-coupled 99.9 1.9E-23 4.1E-28 186.9 24.3 292 89-453 39-364 (397)
140 KOG4328 WD40 protein [Function 99.9 3.3E-23 7.2E-28 196.8 25.8 304 252-630 171-496 (498)
141 KOG1538 Uncharacterized conser 99.9 1.1E-22 2.3E-27 201.5 30.4 275 139-504 14-293 (1081)
142 KOG0264 Nucleosome remodeling 99.9 5.3E-24 1.1E-28 202.7 20.4 243 53-298 121-404 (422)
143 KOG0321 WD40 repeat-containing 99.9 1.8E-23 4E-28 206.4 24.6 385 152-608 65-552 (720)
144 KOG0269 WD40 repeat-containing 99.9 5.3E-24 1.2E-28 214.9 20.2 286 182-590 40-343 (839)
145 KOG1538 Uncharacterized conser 99.9 3.3E-22 7.2E-27 198.0 30.6 486 58-582 14-519 (1081)
146 KOG1274 WD40 repeat protein [G 99.9 1.6E-22 3.4E-27 208.5 29.3 276 179-532 11-287 (933)
147 KOG4328 WD40 protein [Function 99.9 1E-22 2.3E-27 193.4 24.7 304 166-587 171-495 (498)
148 KOG0650 WD40 repeat nucleolar 99.9 6.7E-23 1.5E-27 200.8 23.0 317 265-627 397-733 (733)
149 KOG2445 Nuclear pore complex c 99.9 3.8E-22 8.3E-27 180.0 25.3 256 262-628 7-317 (361)
150 COG2319 FOG: WD40 repeat [Gene 99.9 1E-19 2.2E-24 195.9 48.6 372 175-630 59-443 (466)
151 KOG0321 WD40 repeat-containing 99.9 1.1E-22 2.5E-27 200.9 22.9 318 228-589 53-393 (720)
152 KOG2445 Nuclear pore complex c 99.9 1.1E-21 2.3E-26 177.2 27.0 254 89-344 9-318 (361)
153 KOG0269 WD40 repeat-containing 99.9 3.6E-23 7.9E-28 208.9 18.8 283 56-345 39-341 (839)
154 KOG4378 Nuclear protein COP1 [ 99.9 2.2E-22 4.7E-27 192.7 22.3 292 199-569 8-305 (673)
155 KOG0267 Microtubule severing p 99.9 3.3E-24 7.2E-29 214.6 10.1 251 25-290 3-260 (825)
156 COG2319 FOG: WD40 repeat [Gene 99.9 3.8E-19 8.3E-24 191.4 50.3 369 135-588 63-443 (466)
157 KOG0267 Microtubule severing p 99.9 6.1E-24 1.3E-28 212.7 9.9 253 282-620 6-260 (825)
158 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-21 3.6E-26 186.7 22.1 290 28-331 4-309 (673)
159 KOG4497 Uncharacterized conser 99.9 3.1E-21 6.6E-26 175.6 21.3 351 142-579 13-424 (447)
160 KOG0302 Ribosome Assembly prot 99.9 4.3E-21 9.4E-26 178.0 22.1 250 89-343 147-437 (440)
161 KOG2919 Guanine nucleotide-bin 99.9 9.8E-21 2.1E-25 172.0 23.7 286 270-620 51-362 (406)
162 KOG0270 WD40 repeat-containing 99.9 2.8E-21 6E-26 183.3 20.4 240 103-349 192-454 (463)
163 KOG1034 Transcriptional repres 99.9 1.1E-20 2.5E-25 172.1 22.8 320 178-545 35-383 (385)
164 KOG1188 WD40 repeat protein [G 99.9 4.2E-21 9E-26 176.0 19.6 287 152-503 41-345 (376)
165 KOG1034 Transcriptional repres 99.9 6.2E-21 1.3E-25 173.8 20.3 336 89-504 34-383 (385)
166 KOG1009 Chromatin assembly com 99.9 8.2E-20 1.8E-24 171.4 25.9 161 181-348 13-199 (434)
167 KOG4497 Uncharacterized conser 99.9 2.4E-20 5.2E-25 169.8 21.4 343 186-621 13-425 (447)
168 KOG0270 WD40 repeat-containing 99.9 3.2E-20 7E-25 176.1 21.8 282 186-551 130-455 (463)
169 KOG1524 WD40 repeat-containing 99.9 3.3E-19 7.1E-24 172.8 28.5 437 91-629 12-523 (737)
170 KOG0302 Ribosome Assembly prot 99.9 2.3E-20 4.9E-25 173.2 19.5 209 138-348 152-382 (440)
171 KOG0322 G-protein beta subunit 99.9 1.3E-20 2.8E-25 166.5 16.9 308 172-586 5-322 (323)
172 KOG1009 Chromatin assembly com 99.9 1.6E-19 3.4E-24 169.6 24.7 298 268-627 13-370 (434)
173 KOG2919 Guanine nucleotide-bin 99.9 2.9E-19 6.4E-24 162.5 25.4 280 136-495 48-361 (406)
174 KOG1310 WD40 repeat protein [G 99.9 7.4E-20 1.6E-24 177.7 20.7 172 172-344 41-231 (758)
175 KOG4227 WD40 repeat protein [G 99.8 2.1E-19 4.6E-24 167.3 22.6 296 175-586 50-386 (609)
176 KOG0307 Vesicle coat complex C 99.8 1E-20 2.2E-25 200.4 14.6 286 228-632 10-330 (1049)
177 PF04192 Utp21: Utp21 specific 99.8 1.3E-21 2.7E-26 181.0 4.2 52 682-733 17-68 (237)
178 PRK11028 6-phosphogluconolacto 99.8 1.8E-17 4E-22 169.3 35.2 273 239-630 4-305 (330)
179 KOG1188 WD40 repeat protein [G 99.8 5.6E-19 1.2E-23 162.2 20.9 276 194-587 41-346 (376)
180 KOG0290 Conserved WD40 repeat- 99.8 3.8E-18 8.1E-23 153.1 24.6 289 213-620 35-358 (364)
181 KOG0303 Actin-binding protein 99.8 6.2E-19 1.3E-23 164.7 19.9 236 86-325 74-320 (472)
182 PF02239 Cytochrom_D1: Cytochr 99.8 6.6E-17 1.4E-21 163.7 35.2 335 152-598 6-358 (369)
183 KOG0307 Vesicle coat complex C 99.8 5E-20 1.1E-24 195.2 12.7 275 110-457 36-330 (1049)
184 PRK11028 6-phosphogluconolacto 99.8 9.9E-17 2.2E-21 163.9 35.8 281 198-545 7-304 (330)
185 KOG0649 WD40 repeat protein [G 99.8 3.7E-17 8E-22 142.9 26.8 268 58-341 12-313 (325)
186 KOG1007 WD repeat protein TSSC 99.8 3.9E-18 8.5E-23 152.8 20.2 226 112-345 39-290 (370)
187 KOG0322 G-protein beta subunit 99.8 1.6E-18 3.5E-23 153.4 17.2 291 84-453 5-322 (323)
188 KOG0642 Cell-cycle nuclear pro 99.8 7.7E-19 1.7E-23 172.0 16.1 270 262-597 289-571 (577)
189 KOG0644 Uncharacterized conser 99.8 1.8E-19 3.9E-24 183.5 11.6 287 172-549 181-472 (1113)
190 KOG1272 WD40-repeat-containing 99.8 8.8E-20 1.9E-24 173.9 7.0 296 314-698 129-449 (545)
191 KOG1310 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 161.7 22.4 226 222-506 48-305 (758)
192 KOG2110 Uncharacterized conser 99.8 2E-16 4.2E-21 147.4 27.7 175 446-633 68-252 (391)
193 KOG1334 WD40 repeat protein [G 99.8 1.3E-18 2.8E-23 167.1 13.6 289 222-628 140-465 (559)
194 KOG0649 WD40 repeat protein [G 99.8 2.3E-16 5E-21 138.0 26.0 285 270-627 12-314 (325)
195 KOG0642 Cell-cycle nuclear pro 99.8 4.7E-18 1E-22 166.6 17.2 264 175-513 288-570 (577)
196 KOG1007 WD repeat protein TSSC 99.8 3.9E-17 8.4E-22 146.5 21.5 251 89-344 59-361 (370)
197 PF02239 Cytochrom_D1: Cytochr 99.8 4.6E-16 1E-20 157.5 32.1 327 107-554 10-356 (369)
198 KOG1587 Cytoplasmic dynein int 99.8 8.5E-17 1.8E-21 166.7 26.9 284 247-588 222-517 (555)
199 KOG1517 Guanine nucleotide bin 99.8 5.3E-17 1.2E-21 170.0 25.3 290 226-590 1066-1384(1387)
200 KOG1524 WD40 repeat-containing 99.8 3.9E-16 8.4E-21 151.8 27.1 453 54-546 12-524 (737)
201 KOG0644 Uncharacterized conser 99.8 1.7E-18 3.7E-23 176.5 11.1 277 223-628 189-467 (1113)
202 KOG2110 Uncharacterized conser 99.8 4.9E-15 1.1E-19 138.2 32.7 269 26-302 16-334 (391)
203 KOG1517 Guanine nucleotide bin 99.8 1.3E-16 2.8E-21 167.1 23.8 292 139-548 1066-1384(1387)
204 KOG0771 Prolactin regulatory e 99.8 4.3E-16 9.2E-21 148.0 25.2 193 428-630 148-355 (398)
205 KOG1912 WD40 repeat protein [G 99.8 3.4E-15 7.3E-20 151.7 32.3 432 25-547 24-553 (1062)
206 KOG0303 Actin-binding protein 99.7 2.5E-16 5.5E-21 147.4 22.1 160 471-630 128-295 (472)
207 KOG1587 Cytoplasmic dynein int 99.7 5E-16 1.1E-20 161.1 25.9 274 203-546 222-517 (555)
208 KOG1334 WD40 repeat protein [G 99.7 1.8E-17 4E-22 159.3 14.0 320 172-548 133-469 (559)
209 KOG4227 WD40 repeat protein [G 99.7 3.1E-16 6.6E-21 146.4 21.5 308 132-504 51-387 (609)
210 KOG1523 Actin-related protein 99.7 1.2E-15 2.7E-20 139.2 24.6 166 175-343 4-175 (361)
211 KOG1240 Protein kinase contain 99.7 4.3E-16 9.4E-21 166.0 24.6 266 80-348 1034-1338(1431)
212 KOG2139 WD40 repeat protein [G 99.7 2.3E-15 5.1E-20 139.6 25.7 288 181-544 98-430 (445)
213 KOG1240 Protein kinase contain 99.7 1.3E-15 2.9E-20 162.4 26.4 269 252-588 1034-1335(1431)
214 KOG1912 WD40 repeat protein [G 99.7 4.3E-15 9.2E-20 150.9 28.4 423 140-590 18-554 (1062)
215 KOG0974 WD-repeat protein WDR6 99.7 5.4E-14 1.2E-18 148.5 37.1 271 57-348 8-292 (967)
216 KOG0771 Prolactin regulatory e 99.7 1.5E-16 3.2E-21 151.1 16.2 202 228-504 148-354 (398)
217 PRK01742 tolB translocation pr 99.7 7.5E-16 1.6E-20 162.1 22.3 236 160-485 183-426 (429)
218 KOG0974 WD-repeat protein WDR6 99.7 5E-13 1.1E-17 141.3 42.2 189 101-300 97-290 (967)
219 KOG2111 Uncharacterized conser 99.7 4.2E-14 9.1E-19 129.4 29.3 227 24-257 15-258 (346)
220 KOG0290 Conserved WD40 repeat- 99.7 8.3E-15 1.8E-19 131.9 23.2 279 10-294 39-361 (364)
221 PRK01742 tolB translocation pr 99.7 2.7E-15 5.9E-20 157.9 22.3 236 246-568 183-426 (429)
222 KOG2315 Predicted translation 99.7 1.1E-13 2.4E-18 136.4 31.5 355 154-629 5-390 (566)
223 KOG2315 Predicted translation 99.7 2.9E-13 6.2E-18 133.5 33.7 372 110-608 8-410 (566)
224 COG4946 Uncharacterized protei 99.7 5.6E-12 1.2E-16 121.5 41.2 435 134-618 33-508 (668)
225 COG5354 Uncharacterized protei 99.7 2.9E-13 6.3E-18 131.7 31.2 359 164-620 15-421 (561)
226 KOG1272 WD40-repeat-containing 99.7 6.8E-16 1.5E-20 147.7 12.9 267 225-579 130-401 (545)
227 KOG2321 WD40 repeat protein [G 99.7 3.8E-14 8.2E-19 139.5 24.8 286 224-588 51-344 (703)
228 KOG2139 WD40 repeat protein [G 99.7 9.5E-14 2.1E-18 129.0 25.5 305 225-628 99-430 (445)
229 KOG2394 WD40 protein DMR-N9 [G 99.7 5.5E-15 1.2E-19 144.2 18.2 93 474-566 290-383 (636)
230 KOG2321 WD40 repeat protein [G 99.7 3.8E-14 8.3E-19 139.4 24.1 277 266-628 49-342 (703)
231 KOG2394 WD40 protein DMR-N9 [G 99.7 5.6E-15 1.2E-19 144.1 18.2 207 397-607 141-383 (636)
232 KOG1523 Actin-related protein 99.6 5.8E-14 1.2E-18 128.5 22.8 208 136-347 9-239 (361)
233 KOG3881 Uncharacterized conser 99.6 4.5E-14 9.7E-19 132.8 21.2 273 225-609 56-342 (412)
234 KOG1354 Serine/threonine prote 99.6 3.1E-14 6.6E-19 131.3 19.4 330 181-626 25-431 (433)
235 PF04762 IKI3: IKI3 family; I 99.6 1E-09 2.2E-14 123.9 58.8 478 92-629 74-639 (928)
236 PRK03629 tolB translocation pr 99.6 1.8E-13 3.8E-18 143.7 26.6 237 162-485 180-428 (429)
237 PF10282 Lactonase: Lactonase, 99.6 4.6E-12 9.9E-17 129.3 35.3 282 283-630 2-323 (345)
238 PF10282 Lactonase: Lactonase, 99.6 1.2E-11 2.7E-16 126.1 38.2 309 240-606 2-345 (345)
239 PRK03629 tolB translocation pr 99.6 3.4E-13 7.3E-18 141.6 27.2 170 427-608 245-427 (429)
240 KOG3881 Uncharacterized conser 99.6 9.6E-14 2.1E-18 130.6 19.4 243 54-300 53-322 (412)
241 KOG2111 Uncharacterized conser 99.6 5.1E-12 1.1E-16 115.9 28.8 238 96-347 8-259 (346)
242 PRK02889 tolB translocation pr 99.6 3.2E-13 6.9E-18 142.0 24.2 178 161-346 176-362 (427)
243 COG2706 3-carboxymuconate cycl 99.6 1.9E-11 4.2E-16 115.0 32.8 276 289-635 15-327 (346)
244 KOG2041 WD40 repeat protein [G 99.6 8.4E-12 1.8E-16 126.2 31.8 520 55-636 13-626 (1189)
245 PRK04922 tolB translocation pr 99.6 3.7E-13 8.1E-18 142.1 23.9 178 161-346 184-370 (433)
246 PF08662 eIF2A: Eukaryotic tra 99.6 3.5E-13 7.6E-18 123.8 20.2 148 478-629 9-179 (194)
247 KOG1409 Uncharacterized conser 99.6 2.2E-13 4.7E-18 125.9 18.4 336 171-588 14-395 (404)
248 PRK05137 tolB translocation pr 99.6 1.1E-12 2.5E-17 138.7 26.6 232 291-608 183-432 (435)
249 PRK02889 tolB translocation pr 99.6 1.5E-12 3.3E-17 136.9 27.4 239 203-568 176-425 (427)
250 COG5354 Uncharacterized protei 99.6 1E-11 2.2E-16 121.2 29.6 333 206-629 15-395 (561)
251 PRK05137 tolB translocation pr 99.6 1.7E-12 3.7E-17 137.4 26.9 175 161-343 182-365 (435)
252 PRK04922 tolB translocation pr 99.5 9.2E-13 2E-17 139.1 24.1 232 291-608 185-432 (433)
253 PF08662 eIF2A: Eukaryotic tra 99.5 8.8E-13 1.9E-17 121.2 20.7 159 426-596 7-187 (194)
254 TIGR02658 TTQ_MADH_Hv methylam 99.5 1E-10 2.2E-15 115.5 35.4 279 161-513 27-339 (352)
255 KOG2314 Translation initiation 99.5 9.2E-12 2E-16 122.5 26.5 327 163-577 192-557 (698)
256 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.8E-10 6E-15 112.4 36.7 270 203-554 27-339 (352)
257 KOG1409 Uncharacterized conser 99.5 2E-12 4.2E-17 119.7 19.8 248 86-346 17-272 (404)
258 KOG2314 Translation initiation 99.5 4.9E-11 1.1E-15 117.4 29.8 337 205-630 192-574 (698)
259 PF04762 IKI3: IKI3 family; I 99.5 2.3E-08 5E-13 113.1 54.0 481 18-587 78-639 (928)
260 KOG2041 WD40 repeat protein [G 99.5 1.9E-10 4.1E-15 116.6 30.4 490 24-586 24-618 (1189)
261 COG2706 3-carboxymuconate cycl 99.5 1.7E-09 3.7E-14 102.1 34.7 302 246-607 15-345 (346)
262 KOG4547 WD40 repeat-containing 99.4 2.4E-11 5.1E-16 121.3 23.1 201 103-310 5-232 (541)
263 KOG1354 Serine/threonine prote 99.4 1.9E-11 4.2E-16 113.1 18.6 292 267-592 24-364 (433)
264 PRK04792 tolB translocation pr 99.4 8.4E-11 1.8E-15 124.0 26.0 172 162-341 199-377 (448)
265 TIGR03300 assembly_YfgL outer 99.4 3.6E-10 7.8E-15 117.9 30.5 300 152-542 66-376 (377)
266 TIGR02800 propeller_TolB tol-p 99.4 6.8E-11 1.5E-15 125.6 25.3 176 162-345 171-355 (417)
267 TIGR02800 propeller_TolB tol-p 99.4 7E-11 1.5E-15 125.6 24.8 207 399-621 169-387 (417)
268 PRK01029 tolB translocation pr 99.4 1.7E-10 3.7E-15 120.6 26.9 133 477-610 283-426 (428)
269 KOG4547 WD40 repeat-containing 99.4 7.6E-11 1.6E-15 117.7 22.0 193 434-633 3-224 (541)
270 PRK04792 tolB translocation pr 99.4 1.6E-10 3.6E-15 121.8 25.5 169 428-608 265-446 (448)
271 PRK00178 tolB translocation pr 99.4 1.9E-10 4.2E-15 122.2 26.1 194 424-628 198-405 (430)
272 PRK00178 tolB translocation pr 99.4 2.4E-10 5.1E-15 121.5 26.5 170 427-608 245-427 (430)
273 KOG1832 HIV-1 Vpr-binding prot 99.4 9.6E-13 2.1E-17 135.9 7.8 270 259-620 1093-1381(1516)
274 COG4946 Uncharacterized protei 99.4 8.4E-09 1.8E-13 100.1 33.0 290 102-455 331-655 (668)
275 TIGR03300 assembly_YfgL outer 99.3 4.6E-09 1E-13 109.6 33.8 296 25-341 64-376 (377)
276 PRK01029 tolB translocation pr 99.3 4.1E-10 9E-15 117.7 24.4 196 425-629 185-403 (428)
277 KOG0309 Conserved WD40 repeat- 99.3 5.6E-11 1.2E-15 120.9 13.9 291 176-588 20-340 (1081)
278 KOG0280 Uncharacterized conser 99.3 3.2E-09 7E-14 96.7 22.6 288 181-589 14-335 (339)
279 KOG4532 WD40-like repeat conta 99.2 6.9E-09 1.5E-13 93.2 23.2 270 159-505 50-332 (344)
280 KOG0280 Uncharacterized conser 99.2 1.5E-09 3.3E-14 98.8 18.8 237 105-345 87-334 (339)
281 KOG1064 RAVE (regulator of V-A 99.2 1.6E-10 3.5E-15 128.8 14.2 225 194-555 2181-2408(2439)
282 KOG1064 RAVE (regulator of V-A 99.2 2.6E-10 5.6E-15 127.2 14.8 182 159-350 2188-2372(2439)
283 PLN02919 haloacid dehalogenase 99.2 3.3E-08 7.1E-13 114.3 32.5 75 518-592 806-893 (1057)
284 PRK11138 outer membrane biogen 99.2 3.8E-08 8.1E-13 103.1 30.5 304 152-544 70-393 (394)
285 PRK04043 tolB translocation pr 99.1 2E-08 4.3E-13 104.3 24.5 190 426-628 189-397 (419)
286 KOG4190 Uncharacterized conser 99.1 5.2E-10 1.1E-14 110.1 11.5 287 266-625 733-1032(1034)
287 PLN02919 haloacid dehalogenase 99.1 9.8E-08 2.1E-12 110.4 31.9 125 425-549 740-892 (1057)
288 KOG1897 Damage-specific DNA bi 99.1 4E-05 8.7E-10 82.4 55.2 587 15-625 306-1000(1096)
289 KOG4532 WD40-like repeat conta 99.0 5.4E-08 1.2E-12 87.7 20.5 236 102-344 83-331 (344)
290 KOG0309 Conserved WD40 repeat- 99.0 3E-09 6.6E-14 108.6 14.0 201 138-347 25-235 (1081)
291 KOG3914 WD repeat protein WDR4 99.0 1.8E-09 3.9E-14 103.0 11.5 170 425-597 63-233 (390)
292 KOG3914 WD repeat protein WDR4 99.0 9.2E-09 2E-13 98.2 16.1 170 271-515 65-234 (390)
293 KOG4190 Uncharacterized conser 99.0 5.6E-10 1.2E-14 109.9 8.1 305 26-340 701-1032(1034)
294 PRK11138 outer membrane biogen 99.0 9.4E-07 2E-11 92.6 32.1 301 25-343 68-393 (394)
295 COG5170 CDC55 Serine/threonine 99.0 8.8E-09 1.9E-13 94.4 13.6 333 224-627 26-458 (460)
296 KOG4714 Nucleoporin [Nuclear s 99.0 7.9E-09 1.7E-13 92.5 12.9 187 153-345 49-255 (319)
297 KOG0882 Cyclophilin-related pe 99.0 1.1E-08 2.4E-13 98.7 14.5 259 266-597 7-315 (558)
298 PF08450 SGL: SMP-30/Gluconola 99.0 1.5E-06 3.4E-11 84.5 29.9 184 427-617 42-244 (246)
299 PRK04043 tolB translocation pr 99.0 4.3E-07 9.4E-12 94.4 27.3 163 162-335 170-339 (419)
300 KOG4649 PQQ (pyrrolo-quinoline 99.0 5E-06 1.1E-10 75.0 29.6 136 152-292 24-159 (354)
301 PF15492 Nbas_N: Neuroblastoma 99.0 9E-07 1.9E-11 81.5 25.1 246 274-598 3-270 (282)
302 KOG4714 Nucleoporin [Nuclear s 99.0 1.1E-08 2.4E-13 91.6 12.3 165 131-298 83-254 (319)
303 PF15492 Nbas_N: Neuroblastoma 98.9 1.1E-06 2.4E-11 80.9 25.1 147 186-335 2-168 (282)
304 PRK02888 nitrous-oxide reducta 98.9 9.6E-07 2.1E-11 92.1 26.5 178 426-618 236-451 (635)
305 COG5170 CDC55 Serine/threonine 98.9 5.4E-08 1.2E-12 89.4 14.8 246 93-344 26-367 (460)
306 KOG4649 PQQ (pyrrolo-quinoline 98.9 2.9E-05 6.4E-10 70.2 31.1 106 102-213 62-167 (354)
307 PF13360 PQQ_2: PQQ-like domai 98.9 4.4E-06 9.5E-11 81.1 28.2 217 35-262 2-237 (238)
308 PF13360 PQQ_2: PQQ-like domai 98.8 3.3E-06 7.2E-11 82.0 26.6 220 112-349 2-235 (238)
309 KOG0882 Cyclophilin-related pe 98.8 8.5E-08 1.8E-12 92.7 14.1 275 180-514 8-315 (558)
310 PF06433 Me-amine-dh_H: Methyl 98.8 3.8E-05 8.3E-10 74.3 31.7 296 161-518 17-334 (342)
311 PF08450 SGL: SMP-30/Gluconola 98.8 2.5E-05 5.4E-10 76.0 31.2 192 143-344 5-213 (246)
312 KOG2695 WD40 repeat protein [G 98.8 2.7E-08 5.8E-13 92.9 9.0 155 443-607 231-401 (425)
313 PF07433 DUF1513: Protein of u 98.7 4.6E-06 9.9E-11 79.6 23.2 197 425-629 5-247 (305)
314 PRK02888 nitrous-oxide reducta 98.7 1.8E-06 3.8E-11 90.2 21.7 328 106-535 69-451 (635)
315 PF00400 WD40: WD domain, G-be 98.7 3.7E-08 8E-13 63.9 6.2 39 547-585 1-39 (39)
316 PF06433 Me-amine-dh_H: Methyl 98.7 6.4E-06 1.4E-10 79.6 23.8 272 247-598 17-331 (342)
317 KOG1645 RING-finger-containing 98.7 1.9E-06 4.1E-11 82.6 18.5 166 163-333 175-349 (463)
318 KOG2066 Vacuolar assembly/sort 98.7 9.1E-07 2E-11 92.3 17.8 181 425-630 40-234 (846)
319 PF07433 DUF1513: Protein of u 98.7 4.5E-05 9.8E-10 73.0 27.0 243 184-498 7-279 (305)
320 KOG1832 HIV-1 Vpr-binding prot 98.6 3.8E-08 8.2E-13 102.8 6.3 171 171-352 1091-1263(1516)
321 KOG1920 IkappaB kinase complex 98.6 0.00024 5.2E-09 78.4 34.7 276 54-344 16-365 (1265)
322 KOG3621 WD40 repeat-containing 98.6 5.8E-06 1.3E-10 85.4 21.2 197 140-346 36-246 (726)
323 cd00216 PQQ_DH Dehydrogenases 98.6 0.00019 4.1E-09 77.1 33.6 176 429-611 221-450 (488)
324 cd00216 PQQ_DH Dehydrogenases 98.6 4.7E-05 1E-09 81.7 28.8 194 152-351 62-326 (488)
325 KOG1645 RING-finger-containing 98.6 2.3E-06 5.1E-11 82.0 15.8 93 249-347 175-269 (463)
326 PF00400 WD40: WD domain, G-be 98.6 2.3E-07 5E-12 60.1 6.5 39 171-209 1-39 (39)
327 PF00930 DPPIV_N: Dipeptidyl p 98.6 3.7E-05 8E-10 79.0 26.0 304 190-575 1-345 (353)
328 KOG3617 WD40 and TPR repeat-co 98.6 1.9E-06 4.2E-11 90.0 16.1 111 185-300 19-133 (1416)
329 KOG3617 WD40 and TPR repeat-co 98.6 3.4E-06 7.3E-11 88.3 17.6 111 227-345 18-132 (1416)
330 KOG2695 WD40 repeat protein [G 98.5 2.9E-07 6.2E-12 86.2 8.6 128 425-556 253-387 (425)
331 KOG2114 Vacuolar assembly/sort 98.5 4.1E-05 8.9E-10 81.0 24.7 197 141-345 27-244 (933)
332 KOG1275 PAB-dependent poly(A) 98.5 2.7E-06 5.9E-11 89.9 15.0 183 102-296 146-340 (1118)
333 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00012 2.7E-09 75.2 27.3 287 246-619 22-348 (353)
334 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.5 0.00097 2.1E-08 71.9 34.7 109 152-264 70-198 (527)
335 KOG1897 Damage-specific DNA bi 98.5 0.0042 9.2E-08 67.6 54.3 532 65-629 225-898 (1096)
336 KOG2114 Vacuolar assembly/sort 98.5 5.6E-05 1.2E-09 80.0 23.5 207 232-513 31-252 (933)
337 KOG1920 IkappaB kinase complex 98.4 0.0009 1.9E-08 74.2 33.1 242 224-547 68-324 (1265)
338 KOG3621 WD40 repeat-containing 98.4 3.2E-05 6.9E-10 80.1 20.6 195 95-300 37-246 (726)
339 KOG1275 PAB-dependent poly(A) 98.4 7.3E-06 1.6E-10 86.9 15.8 178 24-209 145-340 (1118)
340 PF08596 Lgl_C: Lethal giant l 98.4 0.00012 2.6E-09 75.0 24.3 279 316-628 3-334 (395)
341 PF14583 Pectate_lyase22: Olig 98.3 0.00056 1.2E-08 67.8 26.3 181 144-331 42-254 (386)
342 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0029 6.3E-08 68.2 33.8 105 193-301 69-192 (527)
343 COG3391 Uncharacterized conser 98.3 0.0017 3.7E-08 67.2 30.7 279 249-611 13-311 (381)
344 PF04053 Coatomer_WDAD: Coatom 98.3 0.00021 4.6E-09 74.1 23.0 183 425-629 69-262 (443)
345 PF08553 VID27: VID27 cytoplas 98.3 0.00017 3.8E-09 78.8 22.6 191 55-254 429-646 (794)
346 PF14583 Pectate_lyase22: Olig 98.3 0.0064 1.4E-07 60.6 31.3 170 448-628 170-380 (386)
347 KOG2066 Vacuolar assembly/sort 98.3 4.6E-05 1E-09 80.1 17.2 180 139-344 41-233 (846)
348 PF11768 DUF3312: Protein of u 98.2 0.011 2.3E-07 61.1 32.8 119 225-349 206-334 (545)
349 PF04053 Coatomer_WDAD: Coatom 98.2 0.0012 2.7E-08 68.6 26.5 190 128-340 23-219 (443)
350 PF08596 Lgl_C: Lethal giant l 98.2 0.00069 1.5E-08 69.5 23.5 242 270-576 3-325 (395)
351 PF06977 SdiA-regulated: SdiA- 98.1 0.0014 2.9E-08 62.2 23.1 217 224-500 21-246 (248)
352 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0041 9E-08 64.8 29.0 51 204-258 62-112 (410)
353 PF03178 CPSF_A: CPSF A subuni 98.1 0.00072 1.6E-08 68.7 22.7 179 436-624 42-260 (321)
354 COG0823 TolB Periplasmic compo 98.1 9E-05 2E-09 76.6 15.8 186 425-620 193-391 (425)
355 COG3391 Uncharacterized conser 98.1 0.015 3.3E-07 60.2 31.6 284 163-526 13-309 (381)
356 PF04841 Vps16_N: Vps16, N-ter 98.1 0.007 1.5E-07 63.1 29.0 194 77-281 63-272 (410)
357 PF03178 CPSF_A: CPSF A subuni 98.1 0.0044 9.6E-08 62.9 27.2 218 114-342 3-263 (321)
358 PF00780 CNH: CNH domain; Int 98.0 0.0073 1.6E-07 59.9 27.8 243 235-556 6-266 (275)
359 PF06977 SdiA-regulated: SdiA- 98.0 0.0027 5.8E-08 60.3 22.2 213 266-542 19-247 (248)
360 PF11768 DUF3312: Protein of u 98.0 0.031 6.7E-07 57.9 31.8 75 472-547 257-331 (545)
361 KOG1008 Uncharacterized conser 97.9 3.2E-06 7E-11 86.0 1.7 200 425-633 57-279 (783)
362 PF00780 CNH: CNH domain; Int 97.9 0.016 3.4E-07 57.5 27.6 149 191-348 5-169 (275)
363 COG0823 TolB Periplasmic compo 97.9 0.0022 4.7E-08 66.6 21.5 123 204-333 174-300 (425)
364 KOG1008 Uncharacterized conser 97.8 1.1E-05 2.3E-10 82.3 3.4 204 226-504 58-275 (783)
365 PF02897 Peptidase_S9_N: Proly 97.8 0.022 4.9E-07 60.3 28.7 105 227-333 126-245 (414)
366 PF02897 Peptidase_S9_N: Proly 97.7 0.065 1.4E-06 56.8 30.6 116 184-301 126-261 (414)
367 PF08553 VID27: VID27 cytoplas 97.7 0.0011 2.3E-08 72.8 16.8 142 152-297 494-646 (794)
368 PF05694 SBP56: 56kDa selenium 97.7 0.023 5E-07 57.1 23.8 123 495-617 221-392 (461)
369 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.043 9.4E-07 56.2 26.4 87 424-514 307-408 (415)
370 KOG4640 Anaphase-promoting com 97.7 0.00019 4.2E-09 73.6 9.3 94 514-608 19-115 (665)
371 COG3490 Uncharacterized protei 97.7 0.051 1.1E-06 50.8 23.7 274 213-543 58-346 (366)
372 KOG4640 Anaphase-promoting com 97.6 0.00023 4.9E-09 73.1 9.2 92 140-234 23-115 (665)
373 COG3386 Gluconolactonase [Carb 97.6 0.025 5.5E-07 55.8 22.8 237 230-534 30-274 (307)
374 smart00320 WD40 WD40 repeats. 97.5 0.00035 7.6E-09 44.5 5.7 39 547-585 2-40 (40)
375 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.01 2.2E-07 47.4 14.4 101 227-339 2-109 (111)
376 PF07995 GSDH: Glucose / Sorbo 97.5 0.12 2.7E-06 52.3 26.4 74 509-582 246-330 (331)
377 KOG2395 Protein involved in va 97.5 0.0053 1.2E-07 62.0 15.8 140 154-298 349-500 (644)
378 COG3386 Gluconolactonase [Carb 97.4 0.074 1.6E-06 52.6 23.3 206 112-333 46-274 (307)
379 PRK13616 lipoprotein LpqB; Pro 97.4 0.022 4.8E-07 62.0 21.4 176 160-344 328-525 (591)
380 PRK13616 lipoprotein LpqB; Pro 97.4 0.007 1.5E-07 65.8 17.5 146 475-629 350-525 (591)
381 TIGR03074 PQQ_membr_DH membran 97.4 0.39 8.4E-06 54.1 38.2 109 152-264 195-353 (764)
382 PF05096 Glu_cyclase_2: Glutam 97.4 0.14 2.9E-06 48.6 24.1 183 425-618 45-250 (264)
383 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0097 2.1E-07 47.5 13.1 96 146-250 11-109 (111)
384 COG3204 Uncharacterized protei 97.3 0.074 1.6E-06 50.3 19.8 121 224-345 85-211 (316)
385 smart00320 WD40 WD40 repeats. 97.2 0.0011 2.4E-08 42.0 5.8 39 171-209 2-40 (40)
386 KOG1898 Splicing factor 3b, su 97.2 0.61 1.3E-05 52.0 29.5 108 195-302 551-675 (1205)
387 PF05694 SBP56: 56kDa selenium 97.1 0.097 2.1E-06 52.8 20.5 198 152-351 88-349 (461)
388 KOG2444 WD40 repeat protein [G 97.1 0.00065 1.4E-08 61.0 4.9 143 154-300 33-179 (238)
389 COG3490 Uncharacterized protei 97.1 0.25 5.4E-06 46.4 24.4 154 424-585 161-346 (366)
390 COG3204 Uncharacterized protei 97.0 0.2 4.3E-06 47.5 20.0 165 178-344 82-263 (316)
391 COG3292 Predicted periplasmic 97.0 0.53 1.2E-05 48.9 24.1 148 137-294 164-314 (671)
392 KOG2395 Protein involved in va 97.0 0.014 2.9E-07 59.3 12.9 140 106-254 349-499 (644)
393 PF05096 Glu_cyclase_2: Glutam 97.0 0.36 7.8E-06 45.8 22.7 178 98-287 49-249 (264)
394 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.036 7.7E-07 56.8 15.9 89 176-264 302-407 (415)
395 TIGR03074 PQQ_membr_DH membran 96.8 1.3 2.7E-05 50.1 37.8 71 193-264 194-287 (764)
396 PF10647 Gmad1: Lipoprotein Lp 96.8 0.14 3.1E-06 49.5 18.0 144 476-621 25-188 (253)
397 KOG2444 WD40 repeat protein [G 96.7 0.0048 1E-07 55.6 7.0 102 486-587 70-177 (238)
398 PF14870 PSII_BNR: Photosynthe 96.7 0.7 1.5E-05 45.5 30.3 273 55-341 15-301 (302)
399 KOG2079 Vacuolar assembly/sort 96.7 0.0067 1.4E-07 66.7 8.7 103 192-298 98-203 (1206)
400 PHA02713 hypothetical protein; 96.6 0.13 2.9E-06 56.2 18.6 190 152-349 305-538 (557)
401 PRK13684 Ycf48-like protein; P 96.6 1 2.2E-05 45.8 28.1 273 56-342 45-329 (334)
402 PF10647 Gmad1: Lipoprotein Lp 96.6 0.81 1.8E-05 44.3 22.4 115 226-345 25-145 (253)
403 COG5276 Uncharacterized conser 96.5 0.74 1.6E-05 43.6 30.8 271 55-343 85-368 (370)
404 PHA02713 hypothetical protein; 96.5 0.29 6.2E-06 53.7 20.2 215 37-264 273-542 (557)
405 KOG2079 Vacuolar assembly/sort 96.5 0.01 2.2E-07 65.4 8.7 100 485-586 98-202 (1206)
406 KOG4499 Ca2+-binding protein R 96.5 0.49 1.1E-05 43.2 17.5 91 477-567 160-263 (310)
407 PF12894 Apc4_WD40: Anaphase-p 96.5 0.011 2.5E-07 39.1 5.7 34 181-215 11-44 (47)
408 KOG3630 Nuclear pore complex, 96.5 0.087 1.9E-06 58.8 15.4 150 425-575 101-261 (1405)
409 KOG4499 Ca2+-binding protein R 96.4 0.71 1.5E-05 42.2 19.4 142 475-617 109-273 (310)
410 TIGR02604 Piru_Ver_Nterm putat 96.4 1.5 3.3E-05 45.3 24.3 66 269-336 14-91 (367)
411 PF15390 DUF4613: Domain of un 96.4 1.7 3.6E-05 45.7 27.4 117 140-256 59-187 (671)
412 PF15390 DUF4613: Domain of un 96.2 2 4.3E-05 45.2 34.2 150 182-343 20-185 (671)
413 TIGR02604 Piru_Ver_Nterm putat 96.2 0.22 4.7E-06 51.6 16.7 143 475-620 14-205 (367)
414 PRK10115 protease 2; Provision 96.0 3.7 8E-05 46.4 32.4 60 226-288 128-191 (686)
415 COG5276 Uncharacterized conser 96.0 1.5 3.3E-05 41.6 32.2 234 56-300 42-287 (370)
416 PF12894 Apc4_WD40: Anaphase-p 95.9 0.027 5.9E-07 37.4 5.3 35 557-592 11-45 (47)
417 PF14727 PHTB1_N: PTHB1 N-term 95.9 2.6 5.6E-05 43.7 32.7 143 152-298 38-204 (418)
418 KOG4441 Proteins containing BT 95.7 0.97 2.1E-05 49.5 19.4 222 26-258 285-549 (571)
419 PF12234 Rav1p_C: RAVE protein 95.6 0.42 9.1E-06 51.7 15.8 111 516-629 30-156 (631)
420 COG3292 Predicted periplasmic 95.6 3.5 7.6E-05 43.2 27.8 473 57-629 40-531 (671)
421 PF08728 CRT10: CRT10; InterP 95.6 0.81 1.7E-05 50.1 17.7 150 436-586 49-245 (717)
422 KOG4441 Proteins containing BT 95.5 1.3 2.7E-05 48.6 19.5 229 103-347 285-549 (571)
423 PF07995 GSDH: Glucose / Sorbo 95.5 3.2 7E-05 42.1 25.5 66 558-624 253-330 (331)
424 KOG2377 Uncharacterized conser 95.5 0.41 9E-06 48.0 13.9 169 170-345 5-186 (657)
425 KOG2280 Vacuolar assembly/sort 95.5 1.2 2.7E-05 47.9 18.1 197 76-280 65-271 (829)
426 PRK13684 Ycf48-like protein; P 95.4 3.5 7.6E-05 41.9 29.1 149 425-585 173-329 (334)
427 KOG1916 Nuclear protein, conta 95.4 0.014 3.1E-07 62.8 3.9 154 471-628 129-322 (1283)
428 PRK10115 protease 2; Provision 95.4 6.3 0.00014 44.6 32.4 115 182-300 127-257 (686)
429 PHA03098 kelch-like protein; P 95.3 0.95 2.1E-05 49.8 17.9 189 100-299 292-512 (534)
430 PF12234 Rav1p_C: RAVE protein 95.2 0.6 1.3E-05 50.6 15.3 116 226-344 31-156 (631)
431 KOG3630 Nuclear pore complex, 95.1 0.24 5.1E-06 55.5 11.8 188 428-617 45-262 (1405)
432 COG3823 Glutamine cyclotransfe 94.9 2.3 5E-05 38.3 15.1 174 102-287 55-247 (262)
433 PHA03098 kelch-like protein; P 94.7 2.3 5.1E-05 46.8 19.0 186 21-214 290-514 (534)
434 PF03022 MRJP: Major royal jel 94.6 5.1 0.00011 39.6 19.9 159 477-637 3-223 (287)
435 PF10433 MMS1_N: Mono-function 94.5 8.9 0.00019 41.8 40.0 397 140-567 46-503 (504)
436 KOG1896 mRNA cleavage and poly 94.5 12 0.00026 43.2 42.3 147 437-587 1047-1213(1366)
437 KOG1900 Nuclear pore complex, 94.4 7 0.00015 45.5 21.3 162 159-347 97-275 (1311)
438 PLN00033 photosystem II stabil 94.2 8 0.00017 40.1 32.5 150 183-341 240-396 (398)
439 PF14870 PSII_BNR: Photosynthe 94.2 6.3 0.00014 39.0 31.2 145 472-620 142-296 (302)
440 KOG3616 Selective LIM binding 94.1 2.3 5E-05 45.7 15.7 79 472-553 335-413 (1636)
441 TIGR03118 PEPCTERM_chp_1 conse 94.1 6.1 0.00013 38.2 22.1 242 226-525 24-307 (336)
442 KOG2280 Vacuolar assembly/sort 94.0 4.6 9.9E-05 43.9 17.9 216 17-236 45-271 (829)
443 PF14727 PHTB1_N: PTHB1 N-term 94.0 8.7 0.00019 39.9 30.5 259 25-299 36-361 (418)
444 PF08728 CRT10: CRT10; InterP 93.8 3.8 8.1E-05 45.2 17.3 102 239-343 116-245 (717)
445 TIGR03118 PEPCTERM_chp_1 conse 93.7 7.1 0.00015 37.8 23.9 236 270-567 24-307 (336)
446 PF02333 Phytase: Phytase; In 93.7 9.1 0.0002 39.0 21.5 199 142-345 58-291 (381)
447 PF13449 Phytase-like: Esteras 93.5 4.5 9.8E-05 41.0 16.8 156 473-629 18-249 (326)
448 PF14761 HPS3_N: Hermansky-Pud 93.5 3.3 7.1E-05 37.9 13.8 103 528-633 29-167 (215)
449 PF10168 Nup88: Nuclear pore c 93.4 17 0.00036 41.1 23.4 93 182-300 85-181 (717)
450 COG3823 Glutamine cyclotransfe 93.4 2.8 6E-05 37.8 12.7 172 435-617 55-247 (262)
451 TIGR03606 non_repeat_PQQ dehyd 93.1 9 0.00019 40.3 18.3 102 475-578 30-166 (454)
452 COG5167 VID27 Protein involved 93.0 2.7 5.7E-05 43.2 13.6 138 155-298 484-632 (776)
453 PF10313 DUF2415: Uncharacteri 92.9 0.53 1.2E-05 30.2 5.6 32 182-213 1-35 (43)
454 COG4257 Vgb Streptogramin lyas 92.8 9 0.00019 36.3 22.3 235 181-505 61-306 (353)
455 COG4590 ABC-type uncharacteriz 92.8 2.9 6.3E-05 42.3 13.3 163 472-637 218-394 (733)
456 PHA02790 Kelch-like protein; P 92.7 4.4 9.4E-05 43.7 16.1 96 235-336 271-373 (480)
457 PF13449 Phytase-like: Esteras 92.6 13 0.00028 37.7 21.7 161 425-586 20-248 (326)
458 COG5167 VID27 Protein involved 92.6 1.7 3.7E-05 44.5 11.6 144 433-587 476-632 (776)
459 PF14779 BBS1: Ciliary BBSome 92.5 9.2 0.0002 36.4 15.7 135 26-166 30-255 (257)
460 COG4257 Vgb Streptogramin lyas 92.5 10 0.00022 36.0 22.7 243 224-547 61-307 (353)
461 PF07569 Hira: TUP1-like enhan 92.4 0.67 1.4E-05 43.5 8.3 63 565-629 18-95 (219)
462 PHA02790 Kelch-like protein; P 92.2 13 0.00027 40.2 18.8 179 24-213 270-472 (480)
463 KOG2247 WD40 repeat-containing 92.1 0.015 3.3E-07 58.4 -3.0 147 185-340 38-184 (615)
464 KOG2377 Uncharacterized conser 92.0 3.3 7.1E-05 42.0 12.5 100 472-573 64-169 (657)
465 KOG2247 WD40 repeat-containing 91.9 0.033 7.1E-07 56.1 -1.1 134 141-281 38-172 (615)
466 PF10313 DUF2415: Uncharacteri 91.9 0.75 1.6E-05 29.6 5.3 33 225-257 1-35 (43)
467 PF10395 Utp8: Utp8 family; I 91.8 23 0.0005 38.9 21.9 152 473-629 128-305 (670)
468 PF08801 Nucleoporin_N: Nup133 91.6 9.4 0.0002 40.5 17.0 167 60-256 29-220 (422)
469 TIGR02276 beta_rpt_yvtn 40-res 91.5 0.96 2.1E-05 29.1 6.0 41 567-607 1-42 (42)
470 KOG1916 Nuclear protein, conta 91.5 0.32 6.9E-06 53.1 5.4 176 399-586 152-373 (1283)
471 smart00036 CNH Domain found in 91.3 17 0.00037 36.3 29.8 148 193-343 13-182 (302)
472 KOG1898 Splicing factor 3b, su 91.3 32 0.00069 39.4 36.3 86 511-596 533-627 (1205)
473 PF14761 HPS3_N: Hermansky-Pud 91.1 12 0.00027 34.4 15.4 143 479-628 22-213 (215)
474 PF14781 BBS2_N: Ciliary BBSom 90.9 8.7 0.00019 32.2 13.2 121 431-553 5-133 (136)
475 KOG4460 Nuclear pore complex, 90.6 6.5 0.00014 40.8 13.3 30 423-452 102-131 (741)
476 PF07569 Hira: TUP1-like enhan 90.6 2.7 5.9E-05 39.5 10.3 76 511-589 8-97 (219)
477 PF02333 Phytase: Phytase; In 90.6 22 0.00048 36.3 22.3 122 475-596 156-300 (381)
478 KOG1983 Tomosyn and related SN 90.3 38 0.00082 40.1 21.1 32 181-212 35-66 (993)
479 COG4590 ABC-type uncharacteriz 90.1 11 0.00023 38.5 14.0 238 98-343 75-345 (733)
480 COG5290 IkappaB kinase complex 89.9 27 0.00058 38.5 17.5 93 475-568 247-347 (1243)
481 PF10168 Nup88: Nuclear pore c 89.3 18 0.00039 40.8 16.9 28 423-450 83-110 (717)
482 PF11635 Med16: Mediator compl 88.5 52 0.0011 37.8 20.7 76 424-499 259-345 (753)
483 KOG3616 Selective LIM binding 88.4 10 0.00022 41.1 13.3 97 502-603 324-421 (1636)
484 PF07250 Glyoxal_oxid_N: Glyox 87.6 25 0.00053 33.6 14.3 145 205-353 48-206 (243)
485 TIGR03606 non_repeat_PQQ dehyd 87.4 42 0.00092 35.4 32.0 71 527-601 369-446 (454)
486 smart00036 CNH Domain found in 87.2 34 0.00074 34.2 28.7 227 27-264 14-279 (302)
487 PF14781 BBS2_N: Ciliary BBSom 87.2 17 0.00036 30.6 13.8 112 481-594 5-132 (136)
488 TIGR03547 muta_rot_YjhT mutatr 87.1 39 0.00083 34.7 22.1 41 247-288 168-209 (346)
489 PF03022 MRJP: Major royal jel 86.8 35 0.00075 33.8 22.2 167 447-616 35-253 (287)
490 PF11715 Nup160: Nucleoporin N 86.4 3.1 6.7E-05 46.0 9.1 72 525-596 156-257 (547)
491 TIGR03548 mutarot_permut cycli 86.4 40 0.00087 34.1 20.6 67 192-259 123-198 (323)
492 PF11725 AvrE: Pathogenicity f 86.2 27 0.00059 42.2 16.1 153 179-345 360-517 (1774)
493 PLN02193 nitrile-specifier pro 85.9 55 0.0012 35.3 18.2 183 400-590 193-413 (470)
494 PF03088 Str_synth: Strictosid 85.8 7.3 0.00016 30.3 8.0 44 577-620 35-78 (89)
495 PLN02153 epithiospecifier prot 85.6 45 0.00098 34.1 20.8 238 97-337 27-326 (341)
496 TIGR03548 mutarot_permut cycli 85.4 45 0.00097 33.8 19.2 107 435-548 72-197 (323)
497 PF07676 PD40: WD40-like Beta 85.1 3.9 8.5E-05 25.7 5.5 35 550-584 1-38 (39)
498 PRK13614 lipoprotein LpqB; Pro 84.5 66 0.0014 35.3 17.4 140 476-617 344-504 (573)
499 KOG1983 Tomosyn and related SN 84.5 96 0.0021 36.9 20.8 73 472-549 196-268 (993)
500 TIGR03547 muta_rot_YjhT mutatr 84.4 52 0.0011 33.7 22.8 13 446-458 168-180 (346)
No 1
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1e-121 Score=920.19 Aligned_cols=720 Identities=45% Similarity=0.770 Sum_probs=669.5
Q ss_pred CcccccceeeeeecCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCeEEEE
Q 004270 1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVV 80 (764)
Q Consensus 1 ~~~~~p~r~~g~~~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~i~vw 80 (764)
+.||+|||++|||+++|||.+..+++.++++++.|+++++||+++++++++++.++..|+|++.+.+.+|+|+|+.|++|
T Consensus 21 S~iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~ 100 (910)
T KOG1539|consen 21 SDIFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAY 100 (910)
T ss_pred cccccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecCcEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceEEE-ecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccc-ccceeeEecCCccccEEEEeCCCCCCEEEEEe
Q 004270 81 KRAHQVAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS 158 (764)
Q Consensus 81 ~~~~~~~~-~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~ 158 (764)
.+++.+.. +.+|.+.|.-+.+.|.+|++++.++.+.||+..+.+.. .....-.+...++ ++..+||++|+|+++.|+
T Consensus 101 ~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~-Ital~HP~TYLNKIvvGs 179 (910)
T KOG1539|consen 101 ARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF-ITALLHPSTYLNKIVVGS 179 (910)
T ss_pred EccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCc-eeeEecchhheeeEEEee
Confidence 99976555 89999999999999999999999999999999985221 1112233334444 788899999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.+|.+++||+++++.+++++++...|+++..+|.-+.+|+|..+|+|.++|++.++.+.+|++. .+.|++++|..||++
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNP 258 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999987 799999999999999
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (764)
+|++|+..|.+.+||++..+.+..++.+|.+.|....|.|..+.+++++.|+++++|-++++++.+++++.+.||..|+.
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~ 338 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS 338 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch-hhhhccCceeEeeecccccccccceeEee
Q 004270 319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK-EEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 319 ~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
+++|.. +|..+++++.|++++.+++....+.+++.+.+..++.++.+.. ....+++|+..+++...|+.+|++++++|
T Consensus 339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence 999995 8999999999999999999999999999997777777888777 78899999999999999999999999999
Q ss_pred eCCceEEEEEccceeecceeecCCCCC--CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccccc
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPEN--PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (764)
.++..+++|++++..+|++.+.+.+.. ...++++++++||++.++|++.|.|.+||+++|..+..|.. ...|.
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----~~ah~ 493 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----SPAHK 493 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-----Ccccc
Confidence 999999999999999999999887544 46789999999999999999999999999999999999842 14899
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee
Q 004270 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~ 554 (764)
++|++++.+..++.+++++.+|.+++||+++..++..+.....+.++.++....++|++.+|-.|+++|..+.+.++.|.
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccCC
Q 004270 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG 634 (764)
Q Consensus 555 ~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~ 634 (764)
||.++|++++|||||+||++++.|++||+||++++.+++.+..+.+++++.|||+|++|||+|.|+++||+|.++++|..
T Consensus 574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~ 653 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKS 653 (910)
T ss_pred ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCcccCCCCCceeeecCCCccCccCccCCCCCCCCCccCCCCCCCCCCCCCccCcccCeeEecCCcHHhHhhccChHhh
Q 004270 635 DSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDII 714 (764)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~p~~~~~~l~~l~~i 714 (764)
++.+ .++.++.+..+.+|+...+.++++++..- |. .+++..|.+++|++++|+|||+||+||||+|||||.|
T Consensus 654 vs~r-~~~~~~~~~~v~lPst~~~~d~e~~~~tL-----E~--~~e~i~y~~~eQldeeLvTlS~lp~Srwq~Ll~LelI 725 (910)
T KOG1539|consen 654 VSTR-AIPADYVPSWVMLPSTCDEDDDEDDEVTL-----ES--NDEDIKYSSPEQLDEELVTLSKLPRSRWQNLLNLELI 725 (910)
T ss_pred cccc-ccCcccccceeecCcccccccchhhhhhh-----hc--cccccccCChhHhChhhhhhccCcHHHhhhcccHHHH
Confidence 9888 99888888999999966554443322111 11 1233589999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCcCCCcccc
Q 004270 715 KFQHLLIILKVCPHLLWIWNF 735 (764)
Q Consensus 715 ~~r~~p~~~~~~p~~~p~~~~ 735 (764)
|+||||+||||+||+||||=+
T Consensus 726 k~RnkPke~PK~pkkaPFFLp 746 (910)
T KOG1539|consen 726 KKRNKPKEPPKKPKKAPFFLP 746 (910)
T ss_pred HhcCCCCCCCCccccCCcccc
Confidence 999999999999999999955
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.5e-57 Score=448.11 Aligned_cols=568 Identities=19% Similarity=0.287 Sum_probs=476.0
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCeE-EEec-CCCCcceEEEEEeCCeEEEEECC---eEEEEec--CceEEEecc-cccc
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLNL-VLVG-PQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSR-HSAK 95 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~~-~~~~-~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~-h~~~ 95 (764)
++++.|++.+ +..|.+-|+.+++. +... +..+..|++++++||...+.+.. -+++|+. ++.+..++. |++|
T Consensus 29 ~nG~~L~t~~-~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P 107 (775)
T KOG0319|consen 29 SNGQHLYTAC-GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP 107 (775)
T ss_pred CCCCEEEEec-CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC
Confidence 6777777776 46688889999888 3333 55678899999999966654432 2888874 666777777 9999
Q ss_pred eEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe-
Q 004270 96 VNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK- 172 (764)
Q Consensus 96 v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~- 172 (764)
|..++++ |..|++|+.||.++|||+..+.. ...+..+++.+..+.|+|......|++|..|+.+++||+.+..
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYC----THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEE----EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 9999985 67899999999999999999998 8899999999999999999876779999999999999998655
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeC-----CCCEEEEEeCCC
Q 004270 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-----GQPLLASGASSG 247 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-----~~~~l~sg~~dg 247 (764)
+++.+..|.+.|++++|++|+..+++++.|..+.|||+.+-+....+.. ...+-++.+-++ |. ++.+++.+|
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~--ye~~E~vv~l~~~~~~~~~-~~~TaG~~g 260 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL--YESLESVVRLREELGGKGE-YIITAGGSG 260 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech--hhheeeEEEechhcCCcce-EEEEecCCc
Confidence 4888999999999999999999999999999999999988777777765 356788888877 56 888999999
Q ss_pred cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CC
Q 004270 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NG 326 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~ 326 (764)
.+++||.+++++...........+..+...+....++....|..+.++|.+.. ++.+.+.|..+.|..++|.. +.
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l----~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL----TIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc----EEehhhcCCchhheeeeecCCcc
Confidence 99999999998877665333444777777777777888888999999987766 67788889999999999875 77
Q ss_pred CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (764)
Q Consensus 327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (764)
++++.+++.+.+|+|++.+..+. +-.++. ..+.+++ ......+++.++.+.++++|.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~--ii~GH~----------------e~vlSL~-----~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQ--IIPGHT----------------EAVLSLD-----VWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceE--EEeCch----------------hheeeee-----ecccCcEEEEecCCceEEEEE
Confidence 89999999999999987765543 222211 1122222 011124677788899999999
Q ss_pred ccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCCcccceec-CccccccccccCcEEEEEECC
Q 004270 407 LQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYL-DMSERSNYAHNGEVVGVACDS 484 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~ 484 (764)
+.+............+|...|.+++++..+ .++++++.|+++++|++...+...... .........|...|++++++|
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 977666666777778999999999997766 689999999999999998733222211 001112358999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270 485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (764)
Q Consensus 485 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l 563 (764)
+.++++|||.|.+.++|++...+....+.+| ..+.++.|+|..+.+|+++.|++|+||.+.++.++++|.||+..|..+
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 9999999999999999999999999999888 899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
.|-.+|+.|+|++.||-|++|+++++.++.++..|.. |++++-+|.+.+++||+.|+ .|.+|.
T Consensus 554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg-~i~~wk 617 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG-RIIFWK 617 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCe-EEEEee
Confidence 9999999999999999999999999999999988876 99999999999999999999 499997
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-53 Score=425.14 Aligned_cols=525 Identities=16% Similarity=0.292 Sum_probs=444.0
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE--CCeEEEEecCceE----------EEecc
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQV----------ATWSR 91 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~--g~~i~vw~~~~~~----------~~~~~ 91 (764)
+++.++++...+|...+-+......++.. ....+|.|+.||||+.++|. |+.+.+|..++++ +++.|
T Consensus 65 p~g~lllavdE~g~~~lvs~~~r~Vlh~f-~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g 143 (893)
T KOG0291|consen 65 PDGTLLLAVDERGRALLVSLLSRSVLHRF-NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLG 143 (893)
T ss_pred CCceEEEEEcCCCcEEEEecccceeeEEE-eecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecC
Confidence 66778888888777777777776666655 35889999999999888765 5569999865542 23789
Q ss_pred cccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC
Q 004270 92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169 (764)
Q Consensus 92 h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~ 169 (764)
|...|+++.| |.++|++++.|-++++|.++..+-.. ...+..|...+..|.|..+. ..+++.+.||.+.+|-..
T Consensus 144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~--~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF--TYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCD 219 (893)
T ss_pred CccceeEEEeccCCceEEeccccceEEEEEeccccccc--eEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEec
Confidence 9999999998 68899999999999999998776522 45567788999999999998 689999999999999765
Q ss_pred C-----------------------CeE-----------EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270 170 T-----------------------KKK-----------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (764)
Q Consensus 170 ~-----------------------~~~-----------~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~ 215 (764)
. ++. .+-+......|++.+|++..+.||+|-..|...+|.+..-..
T Consensus 220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l 299 (893)
T KOG0291|consen 220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL 299 (893)
T ss_pred CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence 1 111 111233357899999999999999999999999999999999
Q ss_pred EEEEeccCCCCEEEEEEeeCCCCEEEEEe-CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270 216 LVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (764)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v 294 (764)
++.+... ..+|..++|+..|. .+|.|+ .-|.+.||+..+...+...+ +|...+++++++|||+++++|+.||.|+|
T Consensus 300 ih~LSis-~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 300 IHSLSIS-DQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEeecc-cceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 9999876 67899999999999 777776 45899999999998888888 99999999999999999999999999999
Q ss_pred EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
||...+ -+..++..|...|+.+.|+..|+.+++.+-||+||.||+...+.-+.+..
T Consensus 377 Wn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-------------------- 432 (893)
T KOG0291|consen 377 WNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-------------------- 432 (893)
T ss_pred EeccCc----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC--------------------
Confidence 987665 68889999999999999999999999999999999999987766555432
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEEC
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNL 453 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-~i~i~~~ 453 (764)
+.+....+++..|.|..+++|+.|. .|.+|++
T Consensus 433 -----------------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~ 465 (893)
T KOG0291|consen 433 -----------------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV 465 (893)
T ss_pred -----------------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence 1235678999999999999999987 8999999
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCeeeeEecCcceEEEEEeecCCEEEE
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLAT 532 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~ 532 (764)
++|+.+..+. +|.++|.+++|+|.+..|++++.|.+||+||+-. .....+++....+..++|+|+|+-||+
T Consensus 466 qTGqllDiLs--------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 466 QTGQLLDILS--------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred ecCeeeehhc--------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE
Confidence 9999999886 9999999999999999999999999999999754 456778888899999999999999999
Q ss_pred EeCCCeEEEEEccCCeEEEEeec--------------------CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270 533 VADDLVIRLFDVVALRMVRKFEG--------------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (764)
Q Consensus 533 ~~~d~~i~v~d~~~~~~~~~~~~--------------------h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~ 592 (764)
++-||.|.+||.+.+..+..+.| .....+.+++|+||.++++|++...|++||++++-++
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 99999999999988766644432 2246899999999999999999999999999887766
Q ss_pred EEEee---------------------------------------------------------CCceEEEEEcCCCCeEEE
Q 004270 593 DAIHV---------------------------------------------------------DVSITALSLSPNMDVLAT 615 (764)
Q Consensus 593 ~~~~~---------------------------------------------------------~~~v~~l~~sp~g~~lat 615 (764)
+.++. .-.|+++.|||.|+-+|.
T Consensus 618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAa 697 (893)
T KOG0291|consen 618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAA 697 (893)
T ss_pred eeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeee
Confidence 65541 002889999999999999
Q ss_pred EEeCCCeEEEEeccc--ccCCCCC
Q 004270 616 AHVDQNGVYLWVNRC--MFSGDSN 637 (764)
Q Consensus 616 ~~~d~~~i~lW~~~~--~~~~~~~ 637 (764)
++..| +.||.++. .|.|..+
T Consensus 698 atTEG--l~IYsld~~~~FDPf~L 719 (893)
T KOG0291|consen 698 ATTEG--LLIYSLDTTILFDPFDL 719 (893)
T ss_pred ecccc--eEEEecCCceEEccccc
Confidence 99887 77787754 4555543
No 4
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-54 Score=409.24 Aligned_cols=512 Identities=16% Similarity=0.196 Sum_probs=421.2
Q ss_pred ecCCeEEEEEEeCCeEEEEecCCCeEE-E-ecCCCCcceEEEEEeCCeEEEE-ECCe------EEEEecCceEEEecccc
Q 004270 23 RLGTENFVTVSVGKAFHIYNCAKLNLV-L-VGPQLPKKIRALASYRDYTFAA-YGNH------IAVVKRAHQVATWSRHS 93 (764)
Q Consensus 23 ~~~~~~~~~~~~~~~i~iwd~~~~~~~-~-~~~~~~~~I~~~~~~~~~~~~a-~g~~------i~vw~~~~~~~~~~~h~ 93 (764)
.|.+.|++++...|.+||||......+ . ..+...++|..+++++|++.++ .|.. +..||.+..+..+.||+
T Consensus 68 SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhS 147 (603)
T KOG0318|consen 68 SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHS 147 (603)
T ss_pred CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccc
Confidence 378999999999999999999874333 2 4467899999999999966654 4432 89999999999999999
Q ss_pred cceEEEEEe---CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC
Q 004270 94 AKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST 170 (764)
Q Consensus 94 ~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~ 170 (764)
..|.++.+- .-++++|++|++|.+|+-...+. -.++..|..++..+.|+|++ +++++++.||++.+||-.+
T Consensus 148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee----eecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCC
Confidence 999999983 45899999999999998766665 55667789999999999999 8999999999999999999
Q ss_pred CeEEEEEc---CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCC--CCEEEEEEeeCCCCEEEEEeC
Q 004270 171 KKKLYEFK---GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR--GAVTALAFSSDGQPLLASGAS 245 (764)
Q Consensus 171 ~~~~~~~~---~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~l~fs~d~~~~l~sg~~ 245 (764)
|+.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+.+.+.++..+.. ..-..+-|. +. .|++-+.
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd-~lItVSl 298 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KD-HLITVSL 298 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CC-eEEEEEc
Confidence 99999998 8999999999999999999999999999999999999999987643 344455565 33 6888999
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (764)
+|.|.+++......+..+. +|...|+++..+|++.+|++|+.||.|.-|+...+... ...-.+|...|.+++-+..
T Consensus 299 ~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD---RLAGKGHTNQIKGMAASES 374 (603)
T ss_pred CcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc---ccccccccceEEEEeecCC
Confidence 9999999999999888888 99999999999999999999999999999988766321 1122579999999998754
Q ss_pred CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (764)
+ .+++.+.|.++++.++..........
T Consensus 375 ~-~~~t~g~Dd~l~~~~~~~~~~t~~~~---------------------------------------------------- 401 (603)
T KOG0318|consen 375 G-ELFTIGWDDTLRVISLKDNGYTKSEV---------------------------------------------------- 401 (603)
T ss_pred C-cEEEEecCCeEEEEecccCcccccce----------------------------------------------------
Confidence 4 58888999999999875443221100
Q ss_pred EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (764)
........+++..++|.++++.+.++.+.+-+...-... .-.....+++++|+
T Consensus 402 ---------------~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~------------~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 402 ---------------VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSI------------PIGYESSAVAVSPD 454 (603)
T ss_pred ---------------eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceee------------ccccccceEEEcCC
Confidence 011144558899999988888877765554433321111 23446789999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCee---eeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec-CCCCee
Q 004270 486 NTLMISAGYHGDIKVWDFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRIT 561 (764)
Q Consensus 486 ~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-h~~~i~ 561 (764)
+..++.|+.||.|++|.+....+. ...++.++|++++||||+.+||++...+.+.+||+.+.+......+ |+.+|.
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 999999999999999999986543 3456669999999999999999999999999999999887554444 999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe-eC-CceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 562 DFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-VD-VSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 562 ~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~-~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
+++|||+..++|||+.|-+|.||++......-.++ .| ..|+.+.|- |...|++++.|. .|++|++.
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da-~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDA-NIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcc-eeEEeccc
Confidence 99999999999999999999999998754433332 23 349999996 556788999999 49999863
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-50 Score=385.58 Aligned_cols=527 Identities=16% Similarity=0.218 Sum_probs=427.0
Q ss_pred CCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCce---EE-
Q 004270 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ---VA- 87 (764)
Q Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~---~~- 87 (764)
.++|..+-.....--+.++.++++.+-++++...+.+...|...++-..+||.|-|+|+|+. |++|+.... ++
T Consensus 18 Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn 97 (603)
T KOG0318|consen 18 RGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN 97 (603)
T ss_pred CCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee
Confidence 34555544444444556778999999999999999999999999999999999999999876 999996442 22
Q ss_pred EecccccceEEEEE--eCCEEEEEecC----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC
Q 004270 88 TWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (764)
Q Consensus 88 ~~~~h~~~v~~l~~--~g~~l~s~~~d----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (764)
+++.-.++|..|++ ++++|++.++- |.+.+|| ++.. +.++..|...+.+|.|-|... -++++|+.|+
T Consensus 98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~S----vGei~GhSr~ins~~~KpsRP-fRi~T~sdDn 170 (603)
T KOG0318|consen 98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNS----VGEITGHSRRINSVDFKPSRP-FRIATGSDDN 170 (603)
T ss_pred eeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCc----cceeeccceeEeeeeccCCCc-eEEEeccCCC
Confidence 27788899999998 68899888752 2355665 5555 788999999999999999886 4899999999
Q ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe--ccCCCCEEEEEEeeCCCCE
Q 004270 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~d~~~~ 239 (764)
++.+|.-.-.+...++..|..-|.|+.|+|||.++|+++.||+|.+||-.+|+.+..+. ..|++.|.+++|+||+. .
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~ 249 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-Q 249 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-e
Confidence 99999988888889999999999999999999999999999999999999999999987 34589999999999999 8
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeecccc--cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270 240 LASGASSGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
+++++.|.+++|||+.+.+++.++..+.. ..-..+-|- ...|++.+.+|+|.+++.+.. ..+..+.||...|
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~----~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP----SVLKVISGHNKSI 323 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC----Chhheecccccce
Confidence 99999999999999999999998874433 334445554 557999999999999977655 4677788999999
Q ss_pred eeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (764)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (764)
+++..++|+++|++|+.||.|.-|+..++...+...
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g-------------------------------------------- 359 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG-------------------------------------------- 359 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCcccccccc--------------------------------------------
Confidence 999999999999999999999999987665433221
Q ss_pred CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (764)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (764)
..|...|.+++.+..+.++.+| .|.++++.++..+....... ..-....
T Consensus 360 -----------------------~~h~nqI~~~~~~~~~~~~t~g-~Dd~l~~~~~~~~~~t~~~~-------~~lg~QP 408 (603)
T KOG0318|consen 360 -----------------------KGHTNQIKGMAASESGELFTIG-WDDTLRVISLKDNGYTKSEV-------VKLGSQP 408 (603)
T ss_pred -----------------------ccccceEEEEeecCCCcEEEEe-cCCeEEEEecccCcccccce-------eecCCCc
Confidence 2456888888888766655554 66688888875543332211 0122334
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE--EEEeec
Q 004270 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFEG 555 (764)
Q Consensus 478 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~--~~~~~~ 555 (764)
.+++..+++.+++.+..++.+.+=| ...+..........+++++|++..+|+|+.|+.|+||.+..+.+ ...+..
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~---~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~ 485 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQD---QTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE 485 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEec---CCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec
Confidence 5899999987777777666555433 33445555667889999999999999999999999999987654 334667
Q ss_pred CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE-EEEe-eCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccC
Q 004270 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI-DAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS 633 (764)
Q Consensus 556 h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~-~~~~-~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~ 633 (764)
|.++|+++++|||+.|||++...+.+.+||+.+.+.. ..+. ++..|.+++|+|+..++||++-|- .|.+|+++....
T Consensus 486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt-~Viiysv~kP~~ 564 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT-NVIIYSVKKPAK 564 (603)
T ss_pred ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc-eEEEEEccChhh
Confidence 9999999999999999999999999999999988763 2233 455699999999999999999999 599999986554
Q ss_pred C
Q 004270 634 G 634 (764)
Q Consensus 634 ~ 634 (764)
.
T Consensus 565 ~ 565 (603)
T KOG0318|consen 565 H 565 (603)
T ss_pred h
Confidence 4
No 6
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-51 Score=410.24 Aligned_cols=525 Identities=14% Similarity=0.199 Sum_probs=440.6
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCeEEEecCC-CCcceEEEEEeCCeEEEEECCe---EEEEecC--ceEEEecccccceE
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYGNH---IAVVKRA--HQVATWSRHSAKVN 97 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~--~~~~~~~~h~~~v~ 97 (764)
+++++|++++....+++|.+.+++++..... |++||--|+|+|.+.++|+|+- +.|||.. ...+.++||.+.|.
T Consensus 72 ~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs 151 (775)
T KOG0319|consen 72 PDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS 151 (775)
T ss_pred CCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE
Confidence 6789999999999999999999998887755 9999999999999999999775 9999964 45677999999999
Q ss_pred EEEEeC----CEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004270 98 LLLLFG----EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (764)
Q Consensus 98 ~l~~~g----~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~ 173 (764)
++.|.+ ..|+++..|+++++||+.+... .+..+..|...+.+..+++++ ..+++++.|..+.+||+.+.+.
T Consensus 152 sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t---cl~~~~~H~S~vtsL~~~~d~--~~~ls~~RDkvi~vwd~~~~~~ 226 (775)
T KOG0319|consen 152 SLLFHPHWNRWLLASGATDGTVRVWNLNDKRT---CLHTMILHKSAVTSLAFSEDS--LELLSVGRDKVIIVWDLVQYKK 226 (775)
T ss_pred EEEeCCccchhheeecCCCceEEEEEcccCch---HHHHHHhhhhheeeeeeccCC--ceEEEeccCcEEEEeehhhhhh
Confidence 999843 4589999999999999986544 256667788889999999998 8899999999999999988888
Q ss_pred EEEEcCCCCCeEEEEEcCC-----CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270 174 LYEFKGWGSSISSCVSSPA-----LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (764)
Q Consensus 174 ~~~~~~h~~~i~~~~~sp~-----~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~ 248 (764)
..++.. ...+-++.+-++ +.++.+++.+|.+++||.++++.+..........+..+...+... .++..+.+.+
T Consensus 227 l~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~-~~l~vtaeQn 304 (775)
T KOG0319|consen 227 LKTLPL-YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS-QLLLVTAEQN 304 (775)
T ss_pred hheech-hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC-ceEEEEccce
Confidence 877765 456777777777 679999999999999999999988776654333355555555444 3555667899
Q ss_pred EEEEECCCceeeeeeecccccCeeEEEEe-cCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270 249 ISIWNLEKRRLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (764)
+.++|.++.++...+. |..+.|.+++|. |+.++|+.++..+.+|+++..+... ..+.||...|.++....+|-
T Consensus 305 l~l~d~~~l~i~k~iv-G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-----~ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 305 LFLYDEDELTIVKQIV-GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-----QIIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred EEEEEccccEEehhhc-CCchhheeeeecCCccceEEEEeCCCceEEEecCCCce-----EEEeCchhheeeeeecccCc
Confidence 9999999999999998 888899999985 5678999999999999997766532 25679999999999777888
Q ss_pred EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (764)
Q Consensus 328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (764)
+|++|+.|.++++|.+..+..... . ......+...+.++.+ .......+...+.+..+++|++
T Consensus 379 llat~sKD~svilWr~~~~~~~~~-~------------~a~~~gH~~svgava~----~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSL-C------------VAQANGHTNSVGAVAG----SKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhh-h------------hhhhcccccccceeee----cccCccEEEEecCCceEEEecC
Confidence 999999999999999843322111 1 1111223334455554 3455667888899999999999
Q ss_pred cceeecce--ee---cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE
Q 004270 408 QNFVLGEH--IL---RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482 (764)
Q Consensus 408 ~~~~~~~~--~~---~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 482 (764)
...+.... .+ .....|...|.+++++|+.+.+++|+.|.+.++|+++.......+. +|...|.++.|
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--------GH~RGvw~V~F 513 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--------GHTRGVWCVSF 513 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--------CCccceEEEEe
Confidence 87222111 11 1234678999999999999999999999999999999888888885 99999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee
Q 004270 483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 561 (764)
Q Consensus 483 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~ 561 (764)
++..+.++|++.|++|+||.+.+..++.++.++ ..|..+.|-.+++.|++++.||.+++|++.+++++.++.+|+++|.
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 999999999999999999999999999999966 8999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 562 DFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 562 ~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
+++.+|.+.+++||+.||.|.+|.=
T Consensus 594 aL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 594 ALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEeecCccceeEecCCCeEEEEeec
Confidence 9999999999999999999999953
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-53 Score=388.19 Aligned_cols=365 Identities=21% Similarity=0.344 Sum_probs=297.3
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
++-.++.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.+.| ...|.|++|+|||+ .||+|+.||+|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDgk-~iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDGK-KIASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-ccEEEEEEECCCcc-hhhccccCCeEEE
Confidence 456678999999999999999999999999999999999999999999886 89999999999999 9999999999999
Q ss_pred EECCCceeeeeeecccccCeeEEEEec-----CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (764)
||.++|+.+..-..+|...|++++|.| ..++|++++.||+++|||+..+ .++..+.||..+|+|++|-.+|
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----~~~~~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----TCVRTLSGHTASVTCVRWGGEG 259 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----eEEEEeccCccceEEEEEcCCc
Confidence 999999877666669999999999976 5679999999999999998766 6888999999999999997665
Q ss_pred CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE--E
Q 004270 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY--V 404 (764)
Q Consensus 327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 404 (764)
++++++.|++|++|+...+...+++.... .|-+-+++..+ ..++ .
T Consensus 260 -liySgS~DrtIkvw~a~dG~~~r~lkGHa-------------------------------hwvN~lalsTd-y~LRtga 306 (480)
T KOG0271|consen 260 -LIYSGSQDRTIKVWRALDGKLCRELKGHA-------------------------------HWVNHLALSTD-YVLRTGA 306 (480)
T ss_pred -eEEecCCCceEEEEEccchhHHHhhcccc-------------------------------hheeeeeccch-hhhhccc
Confidence 89999999999999998877766654321 11111111100 0000 0
Q ss_pred EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc-ccceecCccccccccccCcEEEEEEC
Q 004270 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
|+-....... ........-.-...+.-..|..+++|+.|+++.+|+..... .+..+ .+|..-|+.+.|+
T Consensus 307 f~~t~~~~~~--~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm--------tgHq~lVn~V~fS 376 (480)
T KOG0271|consen 307 FDHTGRKPKS--FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM--------TGHQALVNHVSFS 376 (480)
T ss_pred cccccccCCC--hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh--------hchhhheeeEEEC
Confidence 0000000000 00000000000001111235679999999999999976544 44444 4999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE
Q 004270 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (764)
Q Consensus 484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~ 562 (764)
||++++++++.|..|++|+.++|+.+..+..+ ..|..++|+.|.++|++|+.|.++++||+++.++...+.||.+.|.+
T Consensus 377 Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 99999999999999999999999999999977 99999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEE
Q 004270 563 FCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 563 l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
+.|+|||..+++|+.|..+++|.
T Consensus 457 vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 457 VDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999995
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-50 Score=402.25 Aligned_cols=582 Identities=15% Similarity=0.216 Sum_probs=460.5
Q ss_pred cccceeeeeecCCCcce---EEecCCeEEEEEEeCCeEEEEecCCCeEEEec--CCCCcceEEEEEeCCeEEEEECCe--
Q 004270 4 FEPYKAIGYITSSVPFS---VQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG--PQLPKKIRALASYRDYTFAAYGNH-- 76 (764)
Q Consensus 4 ~~p~r~~g~~~~~v~~~---~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~--~~~~~~I~~~~~~~~~~~~a~g~~-- 76 (764)
|.|-.+.|.+.+.+.-. .........++++....+.+||++++...... .....+|+|++.+++...+|.|..
T Consensus 8 ye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG 87 (888)
T KOG0306|consen 8 YEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG 87 (888)
T ss_pred ccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc
Confidence 66777788887654433 22233466777778899999999999554433 234568999999999888877644
Q ss_pred -EEEEecC--ceEEEecccccceEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCC
Q 004270 77 -IAVVKRA--HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL 151 (764)
Q Consensus 77 -i~vw~~~--~~~~~~~~h~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 151 (764)
|++|+.. ....++.||+..|+.+.++ |..|+|||.|+.|.|||+-...- ...+..|...+....|..+.
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G----l~rL~GHkd~iT~~~F~~~~-- 161 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG----LFRLRGHKDSITQALFLNGD-- 161 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee----eEEeecchHHHhHHhccCCC--
Confidence 9999976 5567799999999999984 89999999999999999987776 66778888888777788766
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC------------ceEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD------------EELVTF 219 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~------------~~~~~~ 219 (764)
+.+++.+.|+.|++||+++..+..+.-.|.+.|+++++.+ +.+++++.|+.+.+|++... +...++
T Consensus 162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 7899999999999999999999999999999999999998 68999999999999999311 122233
Q ss_pred eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee-----------------------------------eee
Q 004270 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS-----------------------------------VIR 264 (764)
Q Consensus 220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~-----------------------------------~~~ 264 (764)
.....+..-.++..++++ +++.-+.|..+.++.+.+.+.+. .++
T Consensus 240 ~rqsk~R~i~l~~d~s~r-~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDR-FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeccCCceeEEeecCccc-EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence 333345556666667777 88888889999999886541110 011
Q ss_pred cccccCeeEEEEecCCC---EEEEEcCCCcEEEEEecCCCCC-ceee----EeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 265 EAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDGD-PRLL----RFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~~~---~l~s~~~d~~i~vw~~~~~~~~-~~~~----~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
-...+.++.|.|++. .|++ -.++++..|.++..... ++.. ..+.||...|.+++++.+...+++|+ .+
T Consensus 319 --~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~ 394 (888)
T KOG0306|consen 319 --TSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GE 394 (888)
T ss_pred --chhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CC
Confidence 234577888888654 3444 56789999988773221 2221 34569999999999998887777665 56
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
++++|+..+.++.+.+..+. +. ...--.|+..+..+...+.+.++|+....+
T Consensus 395 SikiWn~~t~kciRTi~~~y-------------------~l-----~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l---- 446 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITCGY-------------------IL-----ASKFVPGDRYIVLGTKNGELQVFDLASASL---- 446 (888)
T ss_pred cEEEEEccCcceeEEecccc-------------------EE-----EEEecCCCceEEEeccCCceEEEEeehhhh----
Confidence 69999999998888765431 11 111234677888889999999999987655
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC-----cccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
+...+.|.+.+.+++.+||+..+++|+.|.+|++|+..-- .....+.. .......-...|.++.+|||+++|+.
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl-~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL-KHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee-ccceEEeccccEEEEEEcCCCcEEEE
Confidence 3334478899999999999999999999999999997422 11111110 00011234578999999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270 492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~ 570 (764)
+-.|.+|++|-+++.+....+-+| -||.||.+|||++++++|+.|.+|++|-++=|.+.+.+-+|.+.|.++.|-|+..
T Consensus 526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 999999999999998887776655 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 571 WLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 571 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
++.++|.|+.|+-||-..-+.+..+..|. .|++++.+|+|.++++++.|. +|++|.-
T Consensus 606 ~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~-sIRlwE~ 663 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK-SIRLWER 663 (888)
T ss_pred eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc-eeEeeec
Confidence 99999999999999999999999987665 599999999999999999998 6999984
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-48 Score=389.08 Aligned_cols=521 Identities=17% Similarity=0.233 Sum_probs=428.5
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE-CCe---EEEEecCceEEEecccccceEEEE
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH---IAVVKRAHQVATWSRHSAKVNLLL 100 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~-g~~---i~vw~~~~~~~~~~~h~~~v~~l~ 100 (764)
++.+-+..+.++.+.++|+++.+-....-.+...|++++.||+|.++.+ ... +.+=-..+.+...-.-+.+|.++.
T Consensus 24 ~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~ 103 (893)
T KOG0291|consen 24 KDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIK 103 (893)
T ss_pred CCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEE
Confidence 4556677888999999999997766555567899999999999877654 332 333222333332223456788888
Q ss_pred E--eCCEEEEEecCCcEEEEEccCCcc----cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE-
Q 004270 101 L--FGEHILSIDIDGNMFIWAFKGIEE----NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK- 173 (764)
Q Consensus 101 ~--~g~~l~s~~~dg~v~vWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~- 173 (764)
| +|+++|.+. .+.+.||....... .....++...|-..+.++-|+.|. +.+++|+.|-+.++|.++..+.
T Consensus 104 fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS--r~l~~gsrD~s~rl~~v~~~k~~ 180 (893)
T KOG0291|consen 104 FSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS--RLLVTGSRDLSARLFGVDGNKNL 180 (893)
T ss_pred ECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC--ceEEeccccceEEEEEecccccc
Confidence 6 788888876 67899999876543 122245566677778888899999 8999999999999999987666
Q ss_pred -EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-----------------------Cce-----E-----EEE
Q 004270 174 -LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-----------------------DEE-----L-----VTF 219 (764)
Q Consensus 174 -~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-----------------------~~~-----~-----~~~ 219 (764)
.+.+.+|...|.++-|..+..-+.+.+.||.+.+|.... ++. . ..+
T Consensus 181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ 260 (893)
T KOG0291|consen 181 FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY 260 (893)
T ss_pred ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence 677899999999999999999999999999999998761 111 1 111
Q ss_pred eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-CcEEEEEec
Q 004270 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFD 298 (764)
Q Consensus 220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-~~i~vw~~~ 298 (764)
.......|++.+|++... +|++|-..|...+|.+....+++.+. -...+|..++|+..|.+++.|+.. |.+-||++.
T Consensus 261 ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred ecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 112236899999999877 99999999999999999999999998 566799999999999999998865 899999998
Q ss_pred CCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (764)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (764)
.. ..+....+|...+++++++|||+++++|+.||.|++||...+-+..++.
T Consensus 339 sE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt------------------------- 389 (893)
T KOG0291|consen 339 SE----SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT------------------------- 389 (893)
T ss_pred cc----ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-------------------------
Confidence 77 4666678999999999999999999999999999999987765544432
Q ss_pred eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc
Q 004270 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (764)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~ 458 (764)
.|.+.++.+.|+..|+.+++.+-||+|+.||+.....
T Consensus 390 -------------------------------------------eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 390 -------------------------------------------EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred -------------------------------------------cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 5679999999999999999999999999999999998
Q ss_pred cceecCccccccccccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCC
Q 004270 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADD 536 (764)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d 536 (764)
.+++.. .......+++.+|.|..++.|+.|. .|.+|++++|+++..+.+| ++|.+++|+|++..||+++.|
T Consensus 427 fRTft~-------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 427 FRTFTS-------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eeeecC-------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 888863 4455678999999999999998876 5999999999999999877 999999999999999999999
Q ss_pred CeEEEEEccCC-eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee------------------
Q 004270 537 LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------------------ 597 (764)
Q Consensus 537 ~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------ 597 (764)
.+|++||+-.. ..+.+++ +...+..++|+|||+-|+++..||.|.+||+..+.++..+.+
T Consensus 500 kTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred ceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 99999998654 3445555 777899999999999999999999999999988766644332
Q ss_pred ---CCceEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270 598 ---DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631 (764)
Q Consensus 598 ---~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~ 631 (764)
....+.+++|+||.++++|+... .|++|+++..
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn-~iCiY~v~~~ 614 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESN-SICIYDVPEG 614 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcc-cEEEEECchh
Confidence 13489999999999999999887 6999998643
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-50 Score=371.46 Aligned_cols=366 Identities=18% Similarity=0.281 Sum_probs=304.0
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
-..+..|...+.++.|+|++ ..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||+.||+|+.||.|++||
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g--~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTG--SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred ccccCCCCCcEEEEEecCCC--ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567889999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEeccCCCCEEEEEEee-----CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE
Q 004270 210 VRYDEELVTFTHSMRGAVTALAFSS-----DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 284 (764)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~-----d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 284 (764)
.++|+++..-..+|...|++++|.| ..+ +||+++.||.++|||+..++++..+. +|+.+|+|+.|--+| +++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc-eEE
Confidence 9999988777777799999999976 455 89999999999999999999999998 999999999997655 999
Q ss_pred EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270 285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364 (764)
Q Consensus 285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (764)
+++.|++|++|+...+ .+.+.+.||...|+.++.+.|- .|=+|..|.+=+-.. ..+ ...+++...
T Consensus 263 SgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy-~LRtgaf~~t~~~~~--------~~s--e~~~~Al~r 327 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDY-VLRTGAFDHTGRKPK--------SFS--EEQKKALER 327 (480)
T ss_pred ecCCCceEEEEEccch----hHHHhhcccchheeeeeccchh-hhhccccccccccCC--------ChH--HHHHHHHHH
Confidence 9999999999976554 6888999999999999987542 233444333211111 100 000000000
Q ss_pred cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (764)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 444 (764)
- .... .+....+..+.++.++.+|+...... .+....+|...|..+.||||++++++++-
T Consensus 328 --Y--------------~~~~-~~~~erlVSgsDd~tlflW~p~~~kk---pi~rmtgHq~lVn~V~fSPd~r~IASaSF 387 (480)
T KOG0271|consen 328 --Y--------------EAVL-KDSGERLVSGSDDFTLFLWNPFKSKK---PITRMTGHQALVNHVSFSPDGRYIASASF 387 (480)
T ss_pred --H--------------HHhh-ccCcceeEEecCCceEEEeccccccc---chhhhhchhhheeeEEECCCccEEEEeec
Confidence 0 0000 11123455667788888888665432 22334478899999999999999999999
Q ss_pred CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEE
Q 004270 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVY 523 (764)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~ 523 (764)
|..|++|+..+|+.+.+|. +|-..|..++|+.|.++|++|+.|.++++|++++.++...+..+ ..|.++.|
T Consensus 388 DkSVkLW~g~tGk~lasfR--------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw 459 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFR--------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW 459 (480)
T ss_pred ccceeeeeCCCcchhhhhh--------hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe
Confidence 9999999999999999985 99999999999999999999999999999999999999999855 89999999
Q ss_pred eecCCEEEEEeCCCeEEEEE
Q 004270 524 HRVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 524 s~~~~~la~~~~d~~i~v~d 543 (764)
+|||..+++|+.|..+++|.
T Consensus 460 spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 460 SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceeecCCCceEEEeec
Confidence 99999999999999999994
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-47 Score=381.14 Aligned_cols=482 Identities=15% Similarity=0.242 Sum_probs=395.1
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCce--EEEecccccceEE
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ--VATWSRHSAKVNL 98 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~--~~~~~~h~~~v~~ 98 (764)
++.-.++++..||.|+||+..+.....++.+|...|+++.|+..|..+++|+. |.|||.-.+ ..+++||.+.|+.
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ 154 (888)
T ss_pred CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence 45566799999999999999999999999999999999999999999999876 999997444 5569999999999
Q ss_pred EEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC------
Q 004270 99 LLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST------ 170 (764)
Q Consensus 99 l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~------ 170 (764)
..| +.++|++++.|+.|++||+++..+ ..+.-.|.+.+..+++++ +.+++++.|+.+.+|++..
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhC----f~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~ 226 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHC----FETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKE 226 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEeccccee----eeEEecccceEEEEEEec----ceEEEEecCCceEEEEeeccccccc
Confidence 988 368999999999999999999988 677777888888888888 3689999999999999811
Q ss_pred ------------------CeEEEE----------EcCC------------------------------------------
Q 004270 171 ------------------KKKLYE----------FKGW------------------------------------------ 180 (764)
Q Consensus 171 ------------------~~~~~~----------~~~h------------------------------------------ 180 (764)
++.+.. .+++
T Consensus 227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s 306 (888)
T KOG0306|consen 227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS 306 (888)
T ss_pred ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence 001100 0000
Q ss_pred -------------CCCeEEEEEcCCCC---EEEEEEcCCeEEEEEccC-Cce------E--EEEeccCCCCEEEEEEeeC
Q 004270 181 -------------GSSISSCVSSPALD---VVAVGCSDGKIHVHNVRY-DEE------L--VTFTHSMRGAVTALAFSSD 235 (764)
Q Consensus 181 -------------~~~i~~~~~sp~~~---~la~g~~dg~i~iwd~~~-~~~------~--~~~~~~~~~~v~~l~fs~d 235 (764)
...|.++.+.|.+. .|+. ..++++..|.+.. ++. + ..+ .+|...|.+++++.+
T Consensus 307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d 384 (888)
T KOG0306|consen 307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSD 384 (888)
T ss_pred HHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecC
Confidence 24556666666543 2333 5677888887765 211 1 222 445889999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270 236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (764)
Q Consensus 236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (764)
.. ++++|+ .+.|++|+..+.+++.++. .+.+.+..|.|.++++++|...|.+.++|+... .++.....|.+
T Consensus 385 ~~-~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdg 455 (888)
T KOG0306|consen 385 SI-LLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASA----SLVETIRAHDG 455 (888)
T ss_pred ce-eeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehh----hhhhhhhcccc
Confidence 86 666654 6799999999999999987 238899999999999999999999999999876 46667779999
Q ss_pred CCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (764)
.+.+++.+||++.+++||.|.+|++||..--...
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~---------------------------------------------- 489 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV---------------------------------------------- 489 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEecc----------------------------------------------
Confidence 9999999999999999999999999997532110
Q ss_pred eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccC
Q 004270 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (764)
Q Consensus 396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (764)
...+-++..+.. ...+ .-...|.|+.+||||++++++--|.++++|-+.+.+...++ ++|.-
T Consensus 490 --~gt~~k~lsl~~----~rtL----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--------YGHkL 551 (888)
T KOG0306|consen 490 --PGTQKKVLSLKH----TRTL----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--------YGHKL 551 (888)
T ss_pred --Ccccceeeeecc----ceEE----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--------ccccc
Confidence 000000000000 0000 12378999999999999999999999999999998887776 49999
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee
Q 004270 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~ 554 (764)
+|.++.++||+++++||+.|..|++|-++-|.+-+.+-. ...|.++.|-|...++.+++.|+.|+-||-...+.++.+.
T Consensus 552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence 999999999999999999999999999999988777654 4899999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 555 ~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
+|...|.+++.+|+|.+++++|.|.+||+|.-..
T Consensus 632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999999999654
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.2e-44 Score=351.69 Aligned_cols=515 Identities=15% Similarity=0.221 Sum_probs=394.6
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe-----EEEEecC--ceEEEecccccceE
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----IAVVKRA--HQVATWSRHSAKVN 97 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~-----i~vw~~~--~~~~~~~~h~~~v~ 97 (764)
...-++.+..|..+.+||++..++-+....+..+++|+|||++|+|+|+|.. ++||+.. ..++++..|+-.|+
T Consensus 47 p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vt 126 (1080)
T KOG1408|consen 47 PCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVT 126 (1080)
T ss_pred ccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccce
Confidence 3456888999999999999999999888889999999999999999999874 9999964 45788999999999
Q ss_pred EEEE--eCCEEEEEecCC--cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004270 98 LLLL--FGEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (764)
Q Consensus 98 ~l~~--~g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~ 173 (764)
+++| .++|+++.+... .|.+||..-... ...-+ -...+..++|+.++ .+.++.+. ..|++|.++.++.
T Consensus 127 cvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~----~asnk-iss~Vsav~fsEdg--SYfvT~gn-rHvk~wyl~~~~K 198 (1080)
T KOG1408|consen 127 CVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS----GASNK-ISSVVSAVAFSEDG--SYFVTSGN-RHVKLWYLQIQSK 198 (1080)
T ss_pred eeeecCCCcEEEeeccccceEEEhhhhhhccc----ccccc-cceeEEEEEEccCC--ceeeeeee-eeEEEEEeecccc
Confidence 9998 589999988744 477887654332 11111 23445677899999 67887755 5799999876552
Q ss_pred EEE-------------E------------------------cCC-----------------CCCeEEEEEcCCCCEEEEE
Q 004270 174 LYE-------------F------------------------KGW-----------------GSSISSCVSSPALDVVAVG 199 (764)
Q Consensus 174 ~~~-------------~------------------------~~h-----------------~~~i~~~~~sp~~~~la~g 199 (764)
... + .|| .....|++. ..++|++|
T Consensus 199 ykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cg 276 (1080)
T KOG1408|consen 199 YKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACG 276 (1080)
T ss_pred ccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEe
Confidence 100 0 011 111233333 34789999
Q ss_pred EcCCeEEEEEccCCceEEEEeccCC-----------------------CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 200 CSDGKIHVHNVRYDEELVTFTHSMR-----------------------GAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 200 ~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
+.+|.|++|+..+-..+.++...|. -...++.|++... .|.....|..|+|||++.
T Consensus 277 Ca~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~-klscVYndhSlYvWDvrD 355 (1080)
T KOG1408|consen 277 CAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTD-KLSCVYNDHSLYVWDVRD 355 (1080)
T ss_pred eccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCc-eEEEEEcCceEEEEeccc
Confidence 9999999999887665555543221 1235678888777 788888999999999987
Q ss_pred ce----eeeeeecccccCeeEEEEecC-----------CCEEEEEcCCCcEEEEEecCCCCCcee---------------
Q 004270 257 RR----LQSVIREAHDNAIISLHFFAN-----------EPVLMSASADNSIKMWIFDTTDGDPRL--------------- 306 (764)
Q Consensus 257 ~~----~~~~~~~~h~~~v~~l~~~~~-----------~~~l~s~~~d~~i~vw~~~~~~~~~~~--------------- 306 (764)
-+ ....+ -|...|+++.-.|- ...+++++.|++|++|+++........
T Consensus 356 ~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~ 433 (1080)
T KOG1408|consen 356 VNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE 433 (1080)
T ss_pred cccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence 53 33333 48888888876651 125899999999999998763211110
Q ss_pred ------------------eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchh
Q 004270 307 ------------------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 368 (764)
Q Consensus 307 ------------------~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (764)
.....+....+.+++.+|+|++|++|..-|.+++|++........
T Consensus 434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~----------------- 496 (1080)
T KOG1408|consen 434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF----------------- 496 (1080)
T ss_pred cCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhh-----------------
Confidence 001112345789999999999999999999999999865432221
Q ss_pred hhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC---CCEEEEEecC
Q 004270 369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAG 445 (764)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~~ 445 (764)
...|...|.|+.+|.. .++|++++.|
T Consensus 497 ---------------------------------------------------~eAHesEilcLeyS~p~~~~kLLASasrd 525 (1080)
T KOG1408|consen 497 ---------------------------------------------------MEAHESEILCLEYSFPVLTNKLLASASRD 525 (1080)
T ss_pred ---------------------------------------------------eecccceeEEEeecCchhhhHhhhhccCC
Confidence 2246688888888753 4789999999
Q ss_pred CcEEEEECcCCcc-cceecCccccccccccCcEEEEEECCCC--CEEEEEeCCCeEEEEECCC---CCeeeeE---ecCc
Q 004270 446 GWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTN--TLMISAGYHGDIKVWDFKG---RDLKSRW---EVGC 516 (764)
Q Consensus 446 g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~---~~~~~~~---~~~~ 516 (764)
..|++||....-. ..++ .+|...|+++.|...| ..++++|.|..|.+--... +.+...- -.+.
T Consensus 526 RlIHV~Dv~rny~l~qtl--------d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 526 RLIHVYDVKRNYDLVQTL--------DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred ceEEEEecccccchhhhh--------cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 9999999865543 3333 4999999999998877 7899999998876544332 2211111 1236
Q ss_pred ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec---CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270 517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593 (764)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~---h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~ 593 (764)
.+..|+..|..+++++++.|..|+|||+++++.++.|+| |.+..-.+...|.|-|||+...|.++.++|..+|+++.
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 788999999999999999999999999999999999986 66778889999999999999999999999999999999
Q ss_pred EEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 594 AIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 594 ~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
...+|+. |+.+.|++|-+.|++++.|+. |++|.+.
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgC-IFvW~lp 713 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGC-IFVWKLP 713 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCce-EEEEECc
Confidence 9988887 999999999999999999995 9999984
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-44 Score=338.16 Aligned_cols=279 Identities=21% Similarity=0.383 Sum_probs=262.2
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD 301 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~ 301 (764)
..+|..+.|++|+. .|+||+.+|.+++|+..+...+.++. +|.+.|.++.|+|. +..++|++.||++++|+++..
T Consensus 175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred CCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 67999999999999 99999999999999999999999998 99999999999997 568999999999999998876
Q ss_pred CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (764)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (764)
.++..+.+|...|..++|+|+|++|+|++.|.+-++||+.+......
T Consensus 252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------------------ 298 (459)
T KOG0272|consen 252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------------------ 298 (459)
T ss_pred ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh------------------------------
Confidence 57788899999999999999999999999999999999876543211
Q ss_pred cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (764)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~ 461 (764)
T Consensus 299 -------------------------------------------------------------------------------- 298 (459)
T KOG0272|consen 299 -------------------------------------------------------------------------------- 298 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEE
Q 004270 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR 540 (764)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~ 540 (764)
. .+|...|.+++|.+||.+++|||.|..-+|||++++.++..+..+ .+|..++|+|+|..||+|+.|++++
T Consensus 299 Q--------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 299 Q--------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred h--------cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEE
Confidence 0 399999999999999999999999999999999999999999888 8999999999999999999999999
Q ss_pred EEEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEe
Q 004270 541 LFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHV 618 (764)
Q Consensus 541 v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~ 618 (764)
|||++..+.+..+.+|.+-|+.+.|+| .|.+|+|++.|++++||.-.++.+++.+.+|.. |.++..++|++++++++.
T Consensus 371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred EeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence 999999999999999999999999999 789999999999999999999999999998886 999999999999999999
Q ss_pred CCCeEEEEe
Q 004270 619 DQNGVYLWV 627 (764)
Q Consensus 619 d~~~i~lW~ 627 (764)
|. ++++|.
T Consensus 451 DR-T~KLW~ 458 (459)
T KOG0272|consen 451 DR-TIKLWR 458 (459)
T ss_pred Cc-eeeecc
Confidence 99 799996
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-44 Score=337.78 Aligned_cols=283 Identities=20% Similarity=0.325 Sum_probs=262.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeC-CCCEEEEEeCCCcEEEEECCCc
Q 004270 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
+-..+|..+.||++++.||+|+.+|.+++|+..+...+.+|.+| ...|.++.|+|. ...-||+|+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-ccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 45789999999999999999999999999999999999999876 899999999998 3447999999999999999999
Q ss_pred eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
.++..+. +|...|..++|+|+|++|+|++.|.+-++||+.+. ..+....||...|.+++|.+||..+++||.|..
T Consensus 252 ~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 252 TPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred cchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccc----hhhHhhcccccccceeEecCCCceeeccCccch
Confidence 9999998 99999999999999999999999999999999887 455566899999999999999999999999999
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
-++||++++.++..
T Consensus 327 ~RvWDlRtgr~im~------------------------------------------------------------------ 340 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMF------------------------------------------------------------------ 340 (459)
T ss_pred hheeecccCcEEEE------------------------------------------------------------------
Confidence 99999877643222
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 497 (764)
+ .+|..+|.+++|+|+|..|+||+.|++
T Consensus 341 --------------------------------------------L--------~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 341 --------------------------------------------L--------AGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred --------------------------------------------e--------cccccceeeEeECCCceEEeecCCCCc
Confidence 1 389999999999999999999999999
Q ss_pred EEEEECCCCCeeeeEecC-cceEEEEEee-cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE
Q 004270 498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (764)
Q Consensus 498 v~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~ 575 (764)
++|||++..+.+.++..+ .-|+.+.|+| .|.+|++++.|+++++|...++.+++.+.||.+.|.++..++|+++++|+
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 999999999988888777 7889999999 78899999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEE
Q 004270 576 GMDGSLRIWD 585 (764)
Q Consensus 576 s~dg~i~iwd 585 (764)
+.|.++++|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 9999999995
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.3e-40 Score=329.46 Aligned_cols=546 Identities=17% Similarity=0.211 Sum_probs=394.1
Q ss_pred cCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeE---EEEECCe---EEEEecCc---
Q 004270 14 TSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT---FAAYGNH---IAVVKRAH--- 84 (764)
Q Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~---~~a~g~~---i~vw~~~~--- 84 (764)
++.+|-.... +...+++++.+.+|.+||..+-..+..+++|.++|+|+.+-|... ++.+|+. |.+|....
T Consensus 13 c~R~~~v~sw-~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~ 91 (764)
T KOG1063|consen 13 CNRVPKVSSW-GPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL 91 (764)
T ss_pred cccccccccc-cccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe
Confidence 3556655444 556678888899999999999888888899999999999988866 5555543 99998652
Q ss_pred -eEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccc--cEEEEeCCCCCCEEEEEeCCC
Q 004270 85 -QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFT--PTCIMHPDTYLNKVIVGSQEG 161 (764)
Q Consensus 85 -~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~l~~~~~dg 161 (764)
.+.++.+|...+.++.-.-......+.|+++.+||.+..+... ...+.+..+.. .+.++.|+...-.++.|+.+.
T Consensus 92 ~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~--~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~ 169 (764)
T KOG1063|consen 92 IKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFL--LAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF 169 (764)
T ss_pred EEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceee--ehheehhhhhHhhHHHhhhccCCcEEEEecCcce
Confidence 3455788888777776433333333679999999996655211 22333333222 233345533213566777788
Q ss_pred cEEEEeCC--CCeEEEEEcCCCCCeEEEEEcCCCC---EEEEEEcCCeEEEEEccCCc----------------------
Q 004270 162 SLQLWNIS--TKKKLYEFKGWGSSISSCVSSPALD---VVAVGCSDGKIHVHNVRYDE---------------------- 214 (764)
Q Consensus 162 ~i~iwd~~--~~~~~~~~~~h~~~i~~~~~sp~~~---~la~g~~dg~i~iwd~~~~~---------------------- 214 (764)
.|.++.-. ..+.+..+.||.+.|.+++|...+. +||+++.|..|+||.+.-+.
T Consensus 170 ~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~ 249 (764)
T KOG1063|consen 170 VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMI 249 (764)
T ss_pred EEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeee
Confidence 88888644 3467888999999999999987654 89999999999999876322
Q ss_pred --eEE------EEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc--eeeeeee----cccccCeeEEEEecCC
Q 004270 215 --ELV------TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR----EAHDNAIISLHFFANE 280 (764)
Q Consensus 215 --~~~------~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~----~~h~~~v~~l~~~~~~ 280 (764)
.+. .+..+|...|.++.|+|.+. .|.+++.|.++.+|...+. --+...+ .+......+..|+|++
T Consensus 250 l~~i~~~is~eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 250 LEEIQYRISFEALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS 328 (764)
T ss_pred eeeEEEEEehhhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC
Confidence 111 12246789999999999997 6888999999999987654 2222222 1334568899999999
Q ss_pred CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHH
Q 004270 281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360 (764)
Q Consensus 281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 360 (764)
+.+++-+..|..++|. ......+.......||.+.|..++|+|.|.+|++.|.|.+-|+|-.-..+..
T Consensus 329 ~~ii~~g~~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~----------- 396 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE----------- 396 (764)
T ss_pred CEEEEecccCcEEEEe-ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc-----------
Confidence 9999999999999997 3333445666777899999999999999999999999999999864311100
Q ss_pred HhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEE
Q 004270 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 440 (764)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 440 (764)
-|.+..++-|....+|+++-+....++
T Consensus 397 -----------------------------------------------------wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 397 -----------------------------------------------------WHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred -----------------------------------------------------eeeecccccccccceeeehccCCceee
Confidence 122222233444555555555444444
Q ss_pred EEecCCcEEEEECc-------------------------------------------CCcc----c--------ceecC-
Q 004270 441 LGTAGGWIERFNLQ-------------------------------------------SGIS----R--------GSYLD- 464 (764)
Q Consensus 441 ~g~~~g~i~i~~~~-------------------------------------------~~~~----~--------~~~~~- 464 (764)
+|.....+++|+.. +|.. . ..+..
T Consensus 424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP 503 (764)
T KOG1063|consen 424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP 503 (764)
T ss_pred ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence 44444555555432 1111 0 00000
Q ss_pred ------------ccccccccccCcEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCeeeeEecC-cceEEEEEeec
Q 004270 465 ------------MSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV 526 (764)
Q Consensus 465 ------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~ 526 (764)
+....+++|...|.+++.+|+++++++++... .|++|+..+-.....+..| -.|+.++||||
T Consensus 504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD 583 (764)
T ss_pred ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC
Confidence 00115689999999999999999999998643 5999999988888877766 79999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeE----EEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc--ceE---EEEee
Q 004270 527 NGLLATVADDLVIRLFDVVALRM----VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQI---DAIHV 597 (764)
Q Consensus 527 ~~~la~~~~d~~i~v~d~~~~~~----~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~--~~~---~~~~~ 597 (764)
+++|++.+.|.++.+|....... ....+.|+.-|.+..|+||+.+++|+|.|.+|+||..+.+ +.+ ..+++
T Consensus 584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~ 663 (764)
T KOG1063|consen 584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF 663 (764)
T ss_pred CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence 99999999999999998754322 2336789999999999999999999999999999999887 433 44566
Q ss_pred CCceEEEEEcC-----CCCeEEEEEeCCCeEEEEecc
Q 004270 598 DVSITALSLSP-----NMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 598 ~~~v~~l~~sp-----~g~~lat~~~d~~~i~lW~~~ 629 (764)
..+|+++++.| .+..++.|-..| -|++|+.+
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~G-eI~l~~~~ 699 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKG-EIVLWRRK 699 (764)
T ss_pred CCceeeEEeeccccccccceEEEEeccc-EEEEEecc
Confidence 77899999987 233667777777 49999965
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.4e-42 Score=303.99 Aligned_cols=286 Identities=19% Similarity=0.351 Sum_probs=262.1
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (764)
Q Consensus 174 ~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd 253 (764)
.+++++|.+.|.++.|++|.++|++++.||.+.|||.-+...+..+... ...|..++|+|.|+ ++|.|+.|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-SSWVMTCAYSPSGN-FVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-ceeEEEEEECCCCC-eEEecCcCceeEEEe
Confidence 3789999999999999999999999999999999999999988888877 78999999999999 999999999999999
Q ss_pred CCCc------eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CC
Q 004270 254 LEKR------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NG 326 (764)
Q Consensus 254 ~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~ 326 (764)
+.+. +....+. +|.+.+.++.|.+|+ .|+|++.|.+..+||+++. ..+..+.||.+.|.++.++| ++
T Consensus 126 ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG----QQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred cccccccccceeeeeec-CccceeEEEEEcCCC-ceEecCCCceEEEEEcccc----eEEEEecCCcccEEEEecCCCCC
Confidence 9865 3344455 999999999999865 7899999999999999887 67888899999999999999 99
Q ss_pred CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (764)
Q Consensus 327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (764)
+.+++|+-|++.++||++.+..
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c---------------------------------------------------------- 221 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQC---------------------------------------------------------- 221 (343)
T ss_pred CeEEecccccceeeeeccCcce----------------------------------------------------------
Confidence 9999999999888888765432
Q ss_pred ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC
Q 004270 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (764)
.+.| .+|...|+++.|.|+|
T Consensus 222 ----------------------------------------------------~qtF--------~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 222 ----------------------------------------------------VQTF--------EGHESDINSVRFFPSG 241 (343)
T ss_pred ----------------------------------------------------eEee--------cccccccceEEEccCC
Confidence 2233 3899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270 487 TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (764)
Q Consensus 487 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l 563 (764)
.-+++|+.|++.++||++..+.+..+.+. .+|++++||..|++|.+|..|.++.|||.-.++.+..+.||.++|+++
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence 99999999999999999999999998876 789999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEeCCCcEEEEE
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd 585 (764)
..+|||.-|+|||.|.++|||.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 9999999999999999999994
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-39 Score=317.47 Aligned_cols=471 Identities=17% Similarity=0.209 Sum_probs=341.8
Q ss_pred ecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 89 ~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
+..|+.+|.++.+ -..+++++-..|.|.|||.++..+ ++.++.....+.++.|-+-. +.+++|+.|..|++|
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----VksfeV~~~PvRa~kfiaRk--nWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----VKSFEVSEVPVRAAKFIARK--NWIVTGSDDMQIRVF 82 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee----eeeeeecccchhhheeeecc--ceEEEecCCceEEEE
Confidence 5568999999886 578999999999999999999988 89999999999999998888 899999999999999
Q ss_pred eCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270 167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (764)
Q Consensus 167 d~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~ 245 (764)
|.++++.++.|..|.+-|.|++.+|...++++++.|-.|++||.+.+- +.++|.+ |..-|.+++|.|.....+|+++-
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cceEEEEEEecCCCccceeeeec
Confidence 999999999999999999999999999999999999999999998765 4455544 58899999999988889999999
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCC--CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE--PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
|++|++|.+.+..+..++. +|...|+++.|.+.| ++|++|+.|.+++|||+.+. .+++++.||...|..+.|+
T Consensus 162 DrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred cccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEec
Confidence 9999999999999999999 999999999998854 79999999999999999887 7899999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
|.-..+++|+.||++|+|...+-+....+..+. ..+=++.. ......++.+.+.+.+.
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl-----------------eRvW~I~~-----~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL-----------------ERVWCIAA-----HKGDGKIAVGFDEGSVT 294 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhcCC-----------------ceEEEEee-----cCCCCeEEEeccCCcEE
Confidence 999999999999999999987766555443210 00000000 00011122222222221
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccc-----cccccccCcEE
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVV 478 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~ 478 (764)
+- -......+..++.|+.+.+.... |.--++.+-.......+... ..+....-...
T Consensus 295 v~-----------------lgreeP~vsMd~~gKIiwa~~~e--i~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq 355 (794)
T KOG0276|consen 295 VK-----------------LGREEPAVSMDSNGKIIWAVHSE--IQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQ 355 (794)
T ss_pred EE-----------------ccCCCCceeecCCccEEEEcCce--eeeeeceeccCcccccCCccccchhhhccccccchH
Confidence 10 00122234445555544443222 11111111100000000000 00001111234
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCC
Q 004270 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD 558 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~ 558 (764)
.++.+|+|+.++.|+ ||.-.||..-. ..-+.-+.-....|++|.+..|+-..++.|.++ +.++..+.+...-.
T Consensus 356 ~L~hsPNGrfV~Vcg-dGEyiIyTala----~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~ 428 (794)
T KOG0276|consen 356 TLAHSPNGRFVVVCG-DGEYIIYTALA----LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS 428 (794)
T ss_pred HhccCCCCcEEEEec-CccEEEEEeee----hhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc
Confidence 577889998766655 68888876211 111223556778899998889998889999988 56666555542211
Q ss_pred CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
..+--.|.+|...+ ++.+++||..++++++.+... ...+.|+.+|.+++.++.++ .|+..+
T Consensus 429 ----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~--~k~v~w~d~g~lVai~~d~S--fyil~~ 489 (794)
T KOG0276|consen 429 ----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT--SKHVYWSDNGELVAIAGDDS--FYILKF 489 (794)
T ss_pred ----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec--cceeEEecCCCEEEEEecCc--eeEEEe
Confidence 11122344555544 667999999999999998653 46899999999999999886 555443
No 18
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.2e-40 Score=323.45 Aligned_cols=485 Identities=16% Similarity=0.233 Sum_probs=366.4
Q ss_pred cCCeEEEEEEeC--CeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE-CCe----EEEEecCceEEE-ecccccc
Q 004270 24 LGTENFVTVSVG--KAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH----IAVVKRAHQVAT-WSRHSAK 95 (764)
Q Consensus 24 ~~~~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~-g~~----i~vw~~~~~~~~-~~~h~~~ 95 (764)
++++|++++-.| ..++||++..-.++..+..|.-.++|++|+|.+.|+.+ |.+ |.+|+....+.. -..-...
T Consensus 88 ~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~ 167 (1080)
T KOG1408|consen 88 QNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSV 167 (1080)
T ss_pred CCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccccccee
Confidence 899999999865 45999999999999999999999999999999999886 444 777875433322 3445667
Q ss_pred eEEEEE--eCCEEEEEecCCcEEEEEccCCcccccce---------eeEec--------CCc--cccEEE----------
Q 004270 96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV---------GHVKL--------DDK--FTPTCI---------- 144 (764)
Q Consensus 96 v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~---------~~~~~--------~~~--~~~~~~---------- 144 (764)
|.+++| ||.|+++.+ ...|++|.++.+.....++ ..+.. ..+ ...+.+
T Consensus 168 Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 168 VSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred EEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 888888 799999988 7889999998776321111 00000 000 000111
Q ss_pred -------------------EeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-C-----------------------C
Q 004270 145 -------------------MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-W-----------------------G 181 (764)
Q Consensus 145 -------------------~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h-----------------------~ 181 (764)
+.-+. ++|++|+.+|.|++++..+...+.++.. | -
T Consensus 247 SsRRLLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 247 SSRRLLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred chhhhhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 11123 5799999999999999887655444321 1 0
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE---EEeccCCCCEEEEEEee------------CCCCEEEEEeCC
Q 004270 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV---TFTHSMRGAVTALAFSS------------DGQPLLASGASS 246 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~l~fs~------------d~~~~l~sg~~d 246 (764)
-...++.|+|..+.|.+...|..++|||++.-+.+. .+..| ...|..+.--| .+ -+++++.|
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyH-S~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD 401 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYH-SACIWDVENLPCNVHSPTAACLPRG--CFTTCSSD 401 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeec-cceeeeeccccccccCcccccCCcc--ceeEecCC
Confidence 123467899999999999999999999998654332 22222 45566655443 23 48899999
Q ss_pred CcEEEEECCCceeeeeee------------------------------------cccccCeeEEEEecCCCEEEEEcCCC
Q 004270 247 GVISIWNLEKRRLQSVIR------------------------------------EAHDNAIISLHFFANEPVLMSASADN 290 (764)
Q Consensus 247 g~i~iwd~~~~~~~~~~~------------------------------------~~h~~~v~~l~~~~~~~~l~s~~~d~ 290 (764)
++|++||+..+..-..+. ......+.+++.+|++++|++|..-|
T Consensus 402 ~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~G 481 (1080)
T KOG1408|consen 402 GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGG 481 (1080)
T ss_pred CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccC
Confidence 999999997631111100 01234689999999999999999999
Q ss_pred cEEEEEecCCCCCceeeEeccCCCCCCeeEEEec---CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA---NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (764)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (764)
.++||++... +.......|...|.|+.|+. ..++|++++.|+.|.+||+...-.
T Consensus 482 nlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~------------------- 538 (1080)
T KOG1408|consen 482 NLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD------------------- 538 (1080)
T ss_pred ceEEEEehhh----hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-------------------
Confidence 9999998765 55667789999999999986 457899999999999999864321
Q ss_pred hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC--CEEEEEecC
Q 004270 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAG 445 (764)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~~ 445 (764)
.+....+|...|+++.|...| ..+++.+.|
T Consensus 539 ------------------------------------------------l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 539 ------------------------------------------------LVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred ------------------------------------------------hhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 122334677999999998888 678888888
Q ss_pred CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC----cceEEE
Q 004270 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI 521 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~i~~~ 521 (764)
..|.+-..+.......+... ........+..++++|..+++++++.|..|+||++.+++..+.++.. +....+
T Consensus 571 ksimFr~~qk~~~g~~f~r~---t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRH---TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred hhhheehhccccCceecccc---ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 87765444422222222200 00122457889999999999999999999999999999999999754 678899
Q ss_pred EEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 522 ~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
...|.|.|+|+.+.|.++.++|..+++++.+..||...|+.+.|++|-+.|++++.||.|.||.++.
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.4e-40 Score=302.48 Aligned_cols=341 Identities=21% Similarity=0.300 Sum_probs=299.3
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
.-+.+|..|...|.+++.+|+.+++|+|+.|..-.+|++.++.....+..| +..|+++.|+.||. +||+|+.+|.|+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-KDSVt~~~Fshdgt-lLATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH-KDSVTCCSFSHDGT-LLATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC-CCceEEEEEccCce-EEEecCCCccEEE
Confidence 456788999999999999999999999999999999999999988888776 89999999999999 9999999999999
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (764)
|...++.....+. ..-+.+.=+.|+|.+..|+.|+.||.+-+|.+... ...+.+.||..++++-.|.|+|+.+++
T Consensus 133 ~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCCCCCcccccccCCCceEEE
Confidence 9999998888886 56677888999999999999999999999988765 567788899999999999999999999
Q ss_pred EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (764)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (764)
+..||+|++|+..++++...+.+.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~-------------------------------------------------------- 231 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQA-------------------------------------------------------- 231 (399)
T ss_pred EecCceEEEEecCCCceeEEeccc--------------------------------------------------------
Confidence 999999999999988765554331
Q ss_pred ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE---CCCCCE
Q 004270 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC---DSTNTL 488 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~~~ 488 (764)
......++.++..+..++.|..++.+++.+..+|+.+.......+.....+...+.++.+ +..-.+
T Consensus 232 -----------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 232 -----------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL 300 (399)
T ss_pred -----------ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence 124566778888888899999999999988888888776653222222345555555554 445578
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270 489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (764)
Q Consensus 489 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d 568 (764)
.|+|+.||+|.|||+...+++....+..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++++|+
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred hhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 8999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcC
Q 004270 569 GKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 569 g~~l~s~s~dg~i~iwd~~ 587 (764)
+++++|+|.|++.+|++++
T Consensus 380 ~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CcEEEEecCCCeEEEEecC
Confidence 9999999999999999876
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-40 Score=293.61 Aligned_cols=290 Identities=18% Similarity=0.318 Sum_probs=263.1
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
.+.++.|...+..+-|+++. ++|++++.||.+.|||.-|...++.++-....|..++|+|.|+++|+|+-|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds--r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS--RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCc--CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 36778888888899999999 8999999999999999999999999998899999999999999999999999999999
Q ss_pred ccCC--c---eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCCEE
Q 004270 210 VRYD--E---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283 (764)
Q Consensus 210 ~~~~--~---~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l 283 (764)
+.+. + .+.....+|.+-+.|+.|.+|+. |++++.|.+..+||+++++.+..+. +|.+.|.+++++| +++.+
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeE
Confidence 9865 2 23333345589999999999775 8899999999999999999999999 9999999999999 89999
Q ss_pred EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (764)
++|+-|++.++||++.+ ...+.+.+|...|++++|.|+|.-+++|+.|++.|+||++.+++...++..
T Consensus 203 vSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-------- 270 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-------- 270 (343)
T ss_pred EecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC--------
Confidence 99999999999998876 688899999999999999999999999999999999999987766554321
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
.....|++++||..|++|++|+
T Consensus 271 ----------------------------------------------------------~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 271 ----------------------------------------------------------SIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred ----------------------------------------------------------cccCCceeEEEcccccEEEeee
Confidence 1237899999999999999999
Q ss_pred cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
.|.++.+||.-.++....+. +|...|+++..+|||..+++|+.|.++|||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999988885 9999999999999999999999999999994
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=282.44 Aligned_cols=290 Identities=14% Similarity=0.318 Sum_probs=254.6
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (764)
Q Consensus 237 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (764)
.-+|++++.|.+|++|...+|.+..+++ ...+.|+.+...|+++.|++++. ..||+||+++... .++..+.+|...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHTKN 85 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--CceeEEeccCCc
Confidence 3489999999999999999999999998 55779999999999999998875 5699999987754 477888999999
Q ss_pred CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270 317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 317 v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
|+.+.|..+|+.+++|++||+++|||++.....+.+
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-------------------------------------------- 121 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-------------------------------------------- 121 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--------------------------------------------
Confidence 999999999999999999999999999875544443
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCc
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 476 (764)
.+..+|+++.+.|+...|++|..+|.|++||+........+. ......
T Consensus 122 -------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-------Pe~~~~ 169 (311)
T KOG0315|consen 122 -------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-------PEDDTS 169 (311)
T ss_pred -------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-------CCCCcc
Confidence 234899999999999999999999999999999887766664 255678
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCe------eeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCC-e
Q 004270 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDL------KSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-R 548 (764)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-~ 548 (764)
|.++.+.|||.+++.+...|..++|++-+.+. +..++.+ ..+..+.+|||+++||+++.|.+++||+.++. +
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 99999999999999999999999999876543 3334433 78999999999999999999999999999988 7
Q ss_pred EEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEE
Q 004270 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSL 606 (764)
Q Consensus 549 ~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~ 606 (764)
....+++|...+.+.+||.||+||+||+.|+.+++||++.++.++.+.+|- +..+++.
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 778899999999999999999999999999999999999999999987654 4666655
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-39 Score=307.16 Aligned_cols=325 Identities=23% Similarity=0.373 Sum_probs=277.7
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCC--c--eEEEEe---------ccCCCCEEEEEEeeCCCCEEEEE
Q 004270 178 KGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYD--E--ELVTFT---------HSMRGAVTALAFSSDGQPLLASG 243 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~--~--~~~~~~---------~~~~~~v~~l~fs~d~~~~l~sg 243 (764)
..|..+|.+++|+|-.. .+++|+.|-..++|++... . ....++ ......|++++|+.+|. +||+|
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~LatG 253 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLATG 253 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEEe
Confidence 34999999999999877 8999999999999999741 1 111111 11235799999999999 99999
Q ss_pred eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
+.||.+++|+. .|.++.++. .|.++|.++.|+..|.+|++++.|+++.+||..++ .....+.-|..+-..+.|-
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----TVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred ecCcEEEEEec-Cchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----eEEEeeeeccCCccceEEe
Confidence 99999999996 566677776 79999999999999999999999999999987665 4555566777776777776
Q ss_pred cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
.+ ..+++++.|+.|+++.+...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~--------------------------------------------------------- 349 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGED--------------------------------------------------------- 349 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCC---------------------------------------------------------
Confidence 43 45777788888877766432
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
.+..++ .+|.+.|.++.|+
T Consensus 350 -----------------------------------------------------~P~~t~--------~GH~g~V~alk~n 368 (524)
T KOG0273|consen 350 -----------------------------------------------------RPVKTF--------IGHHGEVNALKWN 368 (524)
T ss_pred -----------------------------------------------------Ccceee--------ecccCceEEEEEC
Confidence 222233 3899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC---------CEEEEEeCCCeEEEEEccCCeEEEEe
Q 004270 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN---------GLLATVADDLVIRLFDVVALRMVRKF 553 (764)
Q Consensus 484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~---------~~la~~~~d~~i~v~d~~~~~~~~~~ 553 (764)
|.+.+|++++.|+++++|+.........+..+ ..|..+.|+|.| ..+++++.|++|++||+..+.++..|
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 99999999999999999999888888877766 789999999965 48999999999999999999999999
Q ss_pred ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 554 ~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
..|+.+|.+++|||+|+|||+|+.||.|.+|+++++++++.+.....|..++|+.+|++|..+-.|+ .+++-+++
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~-~vcvldlr 523 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG-SVCVLDLR 523 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC-CceEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 58887765
No 23
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.4e-37 Score=292.57 Aligned_cols=518 Identities=16% Similarity=0.193 Sum_probs=389.2
Q ss_pred eeeeecCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe-----------E
Q 004270 9 AIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----------I 77 (764)
Q Consensus 9 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~-----------i 77 (764)
+.||-.-.+.-++.+.....++.. ......+||++...+.+.. +|...|.||+++||...+|+|.. +
T Consensus 59 vygYRG~dcR~Nly~lptgE~vyf-vA~V~Vl~n~ee~~Qr~y~-GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phv 136 (626)
T KOG2106|consen 59 VYGYRGVDCRNNLYLLPTGELVYF-VAAVGVLYNWEERSQRHYL-GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHV 136 (626)
T ss_pred EEeecceeeeceeEEccCccEEEE-eccEEEEEeehhhhccccc-CCCCceEEEeecCCceeeccCcccccCCCcCCCee
Confidence 345533445555555444444433 3467788998775555444 79999999999999999997542 9
Q ss_pred EEEecCce--EEEecccccceEEEEEe----CCEEEEEec--CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCC
Q 004270 78 AVVKRAHQ--VATWSRHSAKVNLLLLF----GEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDT 149 (764)
Q Consensus 78 ~vw~~~~~--~~~~~~h~~~v~~l~~~----g~~l~s~~~--dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 149 (764)
++||.-+. +..+..-...|++++|. |.+|+..+. +..+.|||.+.+.. ....+..+..+..+.|||..
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~----~~~vk~sne~v~~a~FHPtd 212 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK----LGPVKTSNEVVFLATFHPTD 212 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc----cCcceeccceEEEEEeccCC
Confidence 99996543 45566777889999983 777777764 33489999998877 56666677888889999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEE---EcCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC
Q 004270 150 YLNKVIVGSQEGSLQLWNISTKKKLYE---FKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225 (764)
Q Consensus 150 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h-~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 225 (764)
. .+++....|.+..|+.+.+.+... |+.+ ..-|.|++|.++|+ +++|.++|.|.||+..+.+..++.. .|.+
T Consensus 213 ~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~g 288 (626)
T KOG2106|consen 213 P--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDG 288 (626)
T ss_pred C--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCC
Confidence 4 455555668899999988866554 4333 46799999999987 6789999999999998888777777 5699
Q ss_pred CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 304 (764)
.|.+++...+|. |++|+.|..|..|| ..-+.+...+ ....++|..++-.. .-|+.|...+.|-.=.++..
T Consensus 289 gv~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~di~vGTtrN~iL~Gt~~~~---- 359 (626)
T KOG2106|consen 289 GVFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--GDILVGTTRNFILQGTLENG---- 359 (626)
T ss_pred ceEEEEEecCcc--EeecCccceEEecc-ccccccccccCchhcCCeeEEecCC--CcEEEeeccceEEEeeecCC----
Confidence 999999999997 56699999999999 3333222222 23456777766433 33777777777665554443
Q ss_pred eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (764)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (764)
......+|......++.+|+...+++++.|+.+++|+ ..+..
T Consensus 360 -f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~----------------------------------- 401 (626)
T KOG2106|consen 360 -FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE----------------------------------- 401 (626)
T ss_pred -ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee-----------------------------------
Confidence 3334458999999999999999999999999999999 11111
Q ss_pred ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC
Q 004270 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (764)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~ 464 (764)
|.. ....++.++.|+|.| .+++|+..|...+.|.++...+....
T Consensus 402 --------------------wt~--------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~- 445 (626)
T KOG2106|consen 402 --------------------WTK--------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT- 445 (626)
T ss_pred --------------------EEE--------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-
Confidence 110 112788999999999 99999999999999999865555432
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeee-E-ec-CcceEEEEEeecCCEEEEEeCCCeEEE
Q 004270 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-W-EV-GCSLVKIVYHRVNGLLATVADDLVIRL 541 (764)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~-~~-~~~i~~~~~s~~~~~la~~~~d~~i~v 541 (764)
. ..+++.++|+|+|.+||.|+.|+.|++|.++....... . .+ ..+|+.+.||+|++++.+.+.|-.|..
T Consensus 446 -------d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 446 -------D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred -------c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEE
Confidence 3 78999999999999999999999999999875543322 2 11 289999999999999999999999999
Q ss_pred EEccCCeEEEE--------------e----ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE---EEEeeCCc
Q 004270 542 FDVVALRMVRK--------------F----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI---DAIHVDVS 600 (764)
Q Consensus 542 ~d~~~~~~~~~--------------~----~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~ 600 (764)
|....-+.+.. | ..|...|..++-+.+.+++|+|...|.|++|..+-.+.. ..+.+|+.
T Consensus 518 W~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~ 597 (626)
T KOG2106|consen 518 WKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS 597 (626)
T ss_pred EccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccc
Confidence 94332211111 1 135566888888999999999999999999998755443 34455555
Q ss_pred -eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 601 -ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 601 -v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
|++++|+-+...|++.+.|. +|..|++
T Consensus 598 ~vt~V~Fl~~d~~li~tg~D~-Si~qW~l 625 (626)
T KOG2106|consen 598 HVTNVAFLCKDSHLISTGKDT-SIMQWRL 625 (626)
T ss_pred eeEEEEEeeCCceEEecCCCc-eEEEEEe
Confidence 99999999999999998887 7999985
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.4e-39 Score=279.03 Aligned_cols=295 Identities=17% Similarity=0.255 Sum_probs=254.9
Q ss_pred CEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCe
Q 004270 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAI 271 (764)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v 271 (764)
-+|++++.|.+|++|...+|.+..++.+. .+.|..+...||++ .||+++ ...|++||++++. ++.++. +|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~Pv~t~e-~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPNPVATFE-GHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCCceeEEe-ccCCce
Confidence 47899999999999999999999999876 88999999999999 777776 4689999999875 567777 999999
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccc
Q 004270 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (764)
Q Consensus 272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 351 (764)
+++.|..+|+++++||.||+++|||++.. .+.+. ..|..+|+++..+|+...|++|..+|.|++||+.......+
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~----~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSL----SCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCc----ccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 99999999999999999999999999874 22232 36789999999999999999999999999999987765544
Q ss_pred ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (764)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (764)
+.. .....+.+++
T Consensus 162 liP-------------------------------------------------------------------e~~~~i~sl~ 174 (311)
T KOG0315|consen 162 LIP-------------------------------------------------------------------EDDTSIQSLT 174 (311)
T ss_pred cCC-------------------------------------------------------------------CCCcceeeEE
Confidence 322 2337899999
Q ss_pred EccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-Ceee
Q 004270 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS 510 (764)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~ 510 (764)
+.|||.+++.+...|..++|++........+. +....+.|.+.+....+||++++|++++.|.+++||+.++. +...
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~--P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELE--PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccce--EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 99999999999999999999998865544443 12234689999999999999999999999999999999988 4444
Q ss_pred eEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEc
Q 004270 511 RWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS 566 (764)
Q Consensus 511 ~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s 566 (764)
.++.+ ..+..++||.||.||++|+.|+.+++||+..++.++...||.....+++..
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 45544 789999999999999999999999999999999999999999888887764
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-39 Score=283.26 Aligned_cols=299 Identities=17% Similarity=0.271 Sum_probs=254.6
Q ss_pred EEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCccc-ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCc
Q 004270 87 ATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162 (764)
Q Consensus 87 ~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~ 162 (764)
.++++|.+.|+.++. +.+.|++++.|.++.+|++...... -.+++.+.+|..++..+++++++ ++.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccce
Confidence 349999999999996 4789999999999999999876432 34578899999999999999999 89999999999
Q ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC-CCCEEEEEEeeCC-CCEE
Q 004270 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDG-QPLL 240 (764)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~-~~~l 240 (764)
+++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|.+||.. +.+..++..+. .+.|+|+.|+|+. +.++
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 9999999999999999999999999999999999999999999999987 45555555443 7899999999984 4599
Q ss_pred EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (764)
++++.|++|++||+++.+....+. +|.+.++.++++|||.++++|+.||.+.+||++... .+..+ +|...|.++
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~lysl-~a~~~v~sl 239 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLYSL-EAFDIVNSL 239 (315)
T ss_pred EEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeEec-cCCCeEeeE
Confidence 999999999999999999999998 999999999999999999999999999999998773 34444 789999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
+|+|+.-.|+. ..+..|+|||+.+.....++.......
T Consensus 240 ~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~----------------------------------------- 277 (315)
T KOG0279|consen 240 CFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGP----------------------------------------- 277 (315)
T ss_pred EecCCceeEee-ccCCceEEEeccchhhhhhcccccccc-----------------------------------------
Confidence 99998755554 445669999999888777764421100
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~ 454 (764)
..........+++|+++|..|+.|..|+.|++|.+.
T Consensus 278 ------------------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 ------------------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ------------------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 000112456788999999999999999999999864
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8e-38 Score=276.72 Aligned_cols=298 Identities=18% Similarity=0.272 Sum_probs=256.6
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC-----CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS-----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK 204 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~ 204 (764)
..+++.|.+.+...+..+.+. +.+++++.|.++.+|++. .|..++.++||...|..++.++||++.++++.|+.
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~-~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNS-DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeecCCCceEEEEEeecCCC-ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 467788999999999888854 789999999999999764 57789999999999999999999999999999999
Q ss_pred EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC--CCE
Q 004270 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPV 282 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~ 282 (764)
+++||+.+++..+.|.+| ...|.+++|++|++ .+++|+.|.+|++||.............|.+.|.++.|+|+ .++
T Consensus 87 lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGH-TKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEec-CCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 999999999999999876 78899999999999 89999999999999987766655555445889999999998 789
Q ss_pred EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (764)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (764)
+++++.|++|++||++.- ++...+.||.+.++.++++|||...++|+.||.+.+||++.++....+
T Consensus 165 Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---------- 230 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---------- 230 (315)
T ss_pred EEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----------
Confidence 999999999999998876 566777899999999999999999999999999999999887664443
Q ss_pred hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442 (764)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 442 (764)
++...|.+++|+|+.-.|+.+
T Consensus 231 -----------------------------------------------------------~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 231 -----------------------------------------------------------EAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred -----------------------------------------------------------cCCCeEeeEEecCCceeEeec
Confidence 234789999999998877777
Q ss_pred ecCCcEEEEECcCCcccceecCccccc-cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 443 TAGGWIERFNLQSGISRGSYLDMSERS-NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
...+ |++||+.++..+..+....... .........+++|+++|..|+++-.|+.|++|.+.
T Consensus 252 t~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 252 TATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 6655 9999999999888775322211 22234456788999999999999999999999864
No 27
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.9e-37 Score=304.87 Aligned_cols=497 Identities=19% Similarity=0.272 Sum_probs=359.5
Q ss_pred ceEEEEEeCCeEEEEECC--eEEEEecCce--EEEecccccceEEEEE--eCC---EEEEEecCCcEEEEEccCCccccc
Q 004270 58 KIRALASYRDYTFAAYGN--HIAVVKRAHQ--VATWSRHSAKVNLLLL--FGE---HILSIDIDGNMFIWAFKGIEENLA 128 (764)
Q Consensus 58 ~I~~~~~~~~~~~~a~g~--~i~vw~~~~~--~~~~~~h~~~v~~l~~--~g~---~l~s~~~dg~v~vWd~~~~~~~~~ 128 (764)
++.+++-..-+..+|+|. .|.+||..+. +..+.||.++|+|+.+ ..+ ++++|+.||.|++|.+..... .
T Consensus 15 R~~~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~--~ 92 (764)
T KOG1063|consen 15 RVPKVSSWGPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL--I 92 (764)
T ss_pred cccccccccccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe--E
Confidence 444443223344455544 4999998776 3339999999999996 333 899999999999999984333 2
Q ss_pred ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCC--eEEEEEcCCC--CEEEEEEcC
Q 004270 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSS--ISSCVSSPAL--DVVAVGCSD 202 (764)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~--i~~~~~sp~~--~~la~g~~d 202 (764)
.+.+++.+.. ...+++... ..+.+.+.|+.+.+||.+..+ +...+.-..+. -.|+++.|+. -.+|.|+.+
T Consensus 93 ~i~~~~g~~~--~~~cv~a~~--~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~ 168 (764)
T KOG1063|consen 93 KIYTIQGHCK--ECVCVVARS--SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSK 168 (764)
T ss_pred EEEeecCcce--eEEEEEeee--eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcc
Confidence 2445544222 233333322 233334789999999986555 33333322222 2455566632 356677888
Q ss_pred CeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCC--CCEEEEEeCCCcEEEEECCCce--------------------
Q 004270 203 GKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDG--QPLLASGASSGVISIWNLEKRR-------------------- 258 (764)
Q Consensus 203 g~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~--~~~l~sg~~dg~i~iwd~~~~~-------------------- 258 (764)
..|.++.-.+++ .+..+.+ |...|.+++|...+ ..+|++++.|..|+||.+.-+.
T Consensus 169 ~~v~~~s~~~d~f~~v~el~G-H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f 247 (764)
T KOG1063|consen 169 FVVDLYSSSADSFARVAELEG-HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF 247 (764)
T ss_pred eEEEEeccCCcceeEEEEeec-cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee
Confidence 888888766553 3445545 48999999998654 4588999999999999864222
Q ss_pred -ee---e------eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec---cCCCCCCeeEEEecC
Q 004270 259 -LQ---S------VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR---SGHSAPPLCIRFYAN 325 (764)
Q Consensus 259 -~~---~------~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~---~~h~~~v~~i~~~~~ 325 (764)
.. . .+..+|+..|.++.|+|.+..|++++.|.++.+|.-+...+.+...-.+ .|.........|+|+
T Consensus 248 ~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n 327 (764)
T KOG1063|consen 248 MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN 327 (764)
T ss_pred eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC
Confidence 01 0 1113899999999999999999999999999999887776655443322 344556788999999
Q ss_pred CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (764)
++.+++-+.-|..++|....... |
T Consensus 328 ~~~ii~~g~~Gg~hlWkt~d~~~--------------------------------------------------------w 351 (764)
T KOG1063|consen 328 SNVIIAHGRTGGFHLWKTKDKTF--------------------------------------------------------W 351 (764)
T ss_pred CCEEEEecccCcEEEEeccCccc--------------------------------------------------------e
Confidence 99999999999999998322110 1
Q ss_pred EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (764)
. ......+|...|+.++|+|.|.++++.+.|-+-++|-.- |.... . ......+-|...++|+++-+.
T Consensus 352 ~---------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~-w--HEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 352 T---------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQE-W--HEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred e---------eccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccc-e--eeecccccccccceeeehccC
Confidence 1 112234777999999999999999999999999998765 22211 1 111122478999999999986
Q ss_pred CCEEEEEeCCCeEEEEECCCC--------------------------------C--------------------------
Q 004270 486 NTLMISAGYHGDIKVWDFKGR--------------------------------D-------------------------- 507 (764)
Q Consensus 486 ~~~l~s~~~dg~v~iwd~~~~--------------------------------~-------------------------- 507 (764)
...+++|.....+|+|+.... +
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 777899999999999975321 0
Q ss_pred -------------------eeeeEecCcceEEEEEeecCCEEEEEeCC-----CeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270 508 -------------------LKSRWEVGCSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFEGHTDRITDF 563 (764)
Q Consensus 508 -------------------~~~~~~~~~~i~~~~~s~~~~~la~~~~d-----~~i~v~d~~~~~~~~~~~~h~~~i~~l 563 (764)
..+.+.|...|.+++.+|+++++|+++.. ..|++|+..+...+..+.+|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 00011123679999999999999999864 479999999999999999999999999
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcCccce----EEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWDVILARQ----IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~ 631 (764)
+|||||+||++++.|.++.+|....+.. .+..+.|.. |.+..|+|++.++||++.|. .|++|.....
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK-~VkVW~~~~~ 650 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK-KVKVWEEPDL 650 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc-eEEEEeccCc
Confidence 9999999999999999999999864322 233455666 99999999999999999999 6999997644
No 28
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=300.28 Aligned_cols=542 Identities=15% Similarity=0.206 Sum_probs=404.7
Q ss_pred eeeeeecCCCcceEEe-cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE-CCeEEEEecCce
Q 004270 8 KAIGYITSSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNHIAVVKRAHQ 85 (764)
Q Consensus 8 r~~g~~~~~v~~~~~~-~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~-g~~i~vw~~~~~ 85 (764)
+.++. +..+|-.+.. ......+.+..++.|.+|--.+ ....+...|...|.-+..-.+...... .+.+.||+....
T Consensus 67 ~ll~v-s~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk-~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~ 144 (910)
T KOG1539|consen 67 NLLFV-SKPLPDKITALASDKDYVYVASGNKIYAYARGK-HIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSI 144 (910)
T ss_pred EEEEe-cCCCCCceEEEEecCceEEEecCcEEEEEEccc-eEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccc
Confidence 34443 4455544433 2233444445577888875332 455566677889999988888777655 445999986441
Q ss_pred ---EE---E-ecccccceEEEE-Ee--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEE
Q 004270 86 ---VA---T-WSRHSAKVNLLL-LF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVI 155 (764)
Q Consensus 86 ---~~---~-~~~h~~~v~~l~-~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~ 155 (764)
+. + ++...+-|+++. |. =+.++.|+.+|.+.+|++.+++. +.+++.....+.++.-+|.- ..++
T Consensus 145 ~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT~ieqsPaL--DVVa 218 (910)
T KOG1539|consen 145 QEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRITAIEQSPAL--DVVA 218 (910)
T ss_pred cccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE----EEEecccccceeEeccCCcc--eEEE
Confidence 11 1 222223377776 32 46788899999999999999999 77877777666555556655 8999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEee
Q 004270 156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS 234 (764)
Q Consensus 156 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (764)
+|..+|+|.++|++.++.+.+|+...++|++++|..||. .+|+|+..|.+.+||++..+........|.+.|..+.|.|
T Consensus 219 iG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP 298 (910)
T ss_pred EeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence 999999999999999999999997679999999999996 5677778899999999998888888877789999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeeEEEEe-cCCCEEEEEcCCCcEEEEEecCCCCCceeeE-
Q 004270 235 DGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPRLLR- 308 (764)
Q Consensus 235 d~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~- 308 (764)
... ++++++.|+.+++|=.+++ +.+.. +.||..+..++.|. .++..+.+++.|++.+.+++........+..
T Consensus 299 ~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 299 GEP-VLVTAGADNSLKVWVFDSGDGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred CCc-eEeeccCCCceeEEEeeCCCCcchheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 777 9999999999988855543 33333 35999999999998 6788999999999999887643211111111
Q ss_pred -------------eccCCCCCCeeEEEec-----CCCEEEEEeCCCcEEEEEeecccccc-cccchhhhHHHhhccchhh
Q 004270 309 -------------FRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEE 369 (764)
Q Consensus 309 -------------~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 369 (764)
...---.+|..+++.. ..+.+...-.+...+.|+.+....-+ .+......+
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~---------- 446 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK---------- 446 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc----------
Confidence 0111224666666654 12345555567889999987765422 111110000
Q ss_pred hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~ 449 (764)
-...++++.. ..-.+.+..+...+.+.+|+++.+.. ...+...+.|..+|+.++...-++.+++++.+|.+.
T Consensus 447 --~~~~~~av~v-----s~CGNF~~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 447 --DDINATAVCV-----SFCGNFVFIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred --cCcceEEEEE-----eccCceEEEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence 0001111111 11124567788899999999998765 334444567889999999999999999999999999
Q ss_pred EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCC
Q 004270 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG 528 (764)
Q Consensus 450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~ 528 (764)
.||.........+ .-...+.++..+.....++.+..|-.|+++|..+.+..+.+.++ ..|+.++|||||+
T Consensus 519 fw~f~~k~l~~~l---------~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 519 FWDFKKKVLKKSL---------RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred EEecCCcceeeee---------ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 9999998877666 34567788888888889999999999999999999999999855 8999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC-CcEEEEEcC
Q 004270 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI 587 (764)
Q Consensus 529 ~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-g~i~iwd~~ 587 (764)
+|++++.|++|++||+.++.++..+. -..+.+++.|||+|.+|||+..| .-|++|.=.
T Consensus 590 WlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 99999999999999999999988876 45788999999999999999988 569999643
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-37 Score=294.18 Aligned_cols=341 Identities=16% Similarity=0.230 Sum_probs=289.4
Q ss_pred eEEEecccccceEEEEEe---CCEEEEEecCCcEEEEEccCCccccc---cee-------eEecCCccccEEEEeCCCCC
Q 004270 85 QVATWSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLA---PVG-------HVKLDDKFTPTCIMHPDTYL 151 (764)
Q Consensus 85 ~~~~~~~h~~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~p~~~~ 151 (764)
...+..+|+.+|.+.+++ ...|++++.|.+.++|++....-... .++ .-......+.+++++.+|
T Consensus 170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G-- 247 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG-- 247 (524)
T ss_pred cceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC--
Confidence 344444599999999974 44889999999999999975111000 011 011234567888899999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
+.|++|+.+|.+++|+. +|.++.++..|.++|.++.|+..|.+|++++.||++.+||..++...+.+..+ ..+-..+.
T Consensus 248 ~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~-s~~~lDVd 325 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH-SAPALDVD 325 (524)
T ss_pred CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec-cCCccceE
Confidence 89999999999999995 88999999999999999999999999999999999999999999999998876 56667889
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 311 (764)
|..+.. +++++.||.|+++.+...+++.++. +|.++|.++.|.|.+.+|++++.|+++++|..... .....+.
T Consensus 326 W~~~~~--F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----~~~~~l~ 398 (524)
T KOG0273|consen 326 WQSNDE--FATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----NSVHDLQ 398 (524)
T ss_pred EecCce--EeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC----cchhhhh
Confidence 987765 8899999999999999999999999 79999999999999999999999999999976544 4667778
Q ss_pred CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (764)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
+|...|..+.|+|+|.. + |+.
T Consensus 399 ~Hskei~t~~wsp~g~v------~-----~n~------------------------------------------------ 419 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPV------T-----SNP------------------------------------------------ 419 (524)
T ss_pred hhccceeeEeecCCCCc------c-----CCC------------------------------------------------
Confidence 99999999999997631 0 000
Q ss_pred eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (764)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 471 (764)
..+..++.++.|++|++||+..+.++..+.
T Consensus 420 ------------------------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~-------- 449 (524)
T KOG0273|consen 420 ------------------------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLM-------- 449 (524)
T ss_pred ------------------------------------------cCCceEEEeecCCeEEEEEccCCceeEeec--------
Confidence 023456666777788888888888888775
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~ 545 (764)
.|..+|.+++|+|+|+++++|+.||.|.+|+.+++++.+.+...+.|..++|+.+|.+|.++..|+.+++.|++
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999875
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=279.50 Aligned_cols=340 Identities=19% Similarity=0.270 Sum_probs=289.4
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
+.++..|...+..+.++|+. +.+++|+.|..-.+|++.+|.....+.+|...|+++.||.+|.+||+|..+|.|+||.
T Consensus 57 ~~tF~~H~~svFavsl~P~~--~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN--NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred eeehhhcCCceEEEEeCCCC--ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 56777788999999999955 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270 210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (764)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 289 (764)
..++.....+... -..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.++++..|
T Consensus 135 ~stg~~~~~~~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 135 VSTGGEQWKLDQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred cccCceEEEeecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecC
Confidence 9999999888754 56799999999888 99999999999999999988888888 999999999999999999999999
Q ss_pred CcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchh
Q 004270 290 NSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 368 (764)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (764)
|+|++|+..+.. ++.... ....+..++.++..+..++.|..++.+.+-+..+++.........
T Consensus 212 gti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~------------ 275 (399)
T KOG0296|consen 212 GTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV------------ 275 (399)
T ss_pred ceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC------------
Confidence 999999887663 332222 234567788899899999999999999888776655433322100
Q ss_pred hhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 004270 369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 448 (764)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i 448 (764)
.+...........|.++.++..=.+.++|+-||+|
T Consensus 276 ---------------------------------------------~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i 310 (399)
T KOG0296|consen 276 ---------------------------------------------PELKPSQEELDESVESIPSSSKLPLAACGSVDGTI 310 (399)
T ss_pred ---------------------------------------------ccccccchhhhhhhhhcccccccchhhcccccceE
Confidence 00000001112445555666666789999999999
Q ss_pred EEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC
Q 004270 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN 527 (764)
Q Consensus 449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~ 527 (764)
.+||+.....+..+ .|...|+.+.|.+ ..+|++++.+|.|+.||.++|+++.++..| .+|.+++++|+.
T Consensus 311 ~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~ 380 (399)
T KOG0296|consen 311 AIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK 380 (399)
T ss_pred EEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence 99999998888876 6899999999998 789999999999999999999999999888 899999999999
Q ss_pred CEEEEEeCCCeEEEEEcc
Q 004270 528 GLLATVADDLVIRLFDVV 545 (764)
Q Consensus 528 ~~la~~~~d~~i~v~d~~ 545 (764)
+++++++.|++.+||+..
T Consensus 381 ~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cEEEEecCCCeEEEEecC
Confidence 999999999999999864
No 31
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=285.07 Aligned_cols=543 Identities=16% Similarity=0.177 Sum_probs=394.1
Q ss_pred CCCcceEEEEEeCCeEEEEECC---eEEEEecCce---EEEeccc-ccceEEEEE-eCCEEEEEecCCcEEEEEccCCcc
Q 004270 54 QLPKKIRALASYRDYTFAAYGN---HIAVVKRAHQ---VATWSRH-SAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEE 125 (764)
Q Consensus 54 ~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~~~~---~~~~~~h-~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~ 125 (764)
-.|.+|+|||++.+...+|.+. .|.+|+.... ...+.|+ ...|.+++| +|.+|+|.+.+|.|.-||+.+.+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence 3589999999998866666543 4999996432 3335555 568999998 599999999999999999999888
Q ss_pred cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcCC
Q 004270 126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSDG 203 (764)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~dg 203 (764)
...++..++.+++++.+|.+ ..+++|+.||.+...++..++..+. |....+.|.++.|+|++..|+.|+.||
T Consensus 103 ----~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 103 ----KYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG 176 (691)
T ss_pred ----eEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence 67777788999999999999 8999999999888888888877654 445578999999999999999999999
Q ss_pred eEEEEEccCCceEEEEe-------ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEE
Q 004270 204 KIHVHNVRYDEELVTFT-------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF 276 (764)
Q Consensus 204 ~i~iwd~~~~~~~~~~~-------~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~ 276 (764)
.|++||+.++..+.... .....-|.++.|..++ .+++|...|+|.+||...+.++.... .|.+.|.+++.
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav 253 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAV 253 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEE
Confidence 99999999998877322 1123457889998887 49999999999999999999999998 89999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchh
Q 004270 277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356 (764)
Q Consensus 277 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 356 (764)
.+++..++++|.|+.|..+...+...++.....+..|...+.+++..++ .+++|+.|.++.+-........... +..
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~-~~~ 330 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHR-QKN 330 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhh-ccc
Confidence 9999999999999999999887776555566677889999999999977 8999999999888766542211111 000
Q ss_pred hhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee-----cceeecCCCCCCCCeEEEE
Q 004270 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-----GEHILRPCPENPTAVKACT 431 (764)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~~~~v~~~~ 431 (764)
.... .++... .....+..-.....+.+|.+..... ..+.+.........+.+.+
T Consensus 331 ~~p~-------------~~~v~~--------a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~a 389 (691)
T KOG2048|consen 331 LFPA-------------SDRVSV--------APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAA 389 (691)
T ss_pred cccc-------------cceeec--------CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeec
Confidence 0000 000000 0001111122233344444443311 1333344445568899999
Q ss_pred EccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeee
Q 004270 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS 510 (764)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~ 510 (764)
+||+|++++.++-. .+++|.++....+..... ............+.|+-++..++.++ .+..+..+++.+.....
T Consensus 390 iSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v---~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 390 ISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV---DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred cCCCCCEEEEeecc-ceEEEEeccCcceeEEEe---ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 99999999998753 567777765322211110 00112334567788888888777777 77788888877654332
Q ss_pred e--Eec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEeCCCcEEEE
Q 004270 511 R--WEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIW 584 (764)
Q Consensus 511 ~--~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iw 584 (764)
. +.. -..|..+..|++|+++|+.+..|.|.+|++++++.......-...|+.++|+| +-..|+.+..|+.+.-|
T Consensus 466 l~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~ef 545 (691)
T KOG2048|consen 466 LKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEF 545 (691)
T ss_pred hhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEE
Confidence 2 222 26899999999999999999999999999998876554434457899999995 45678888899999999
Q ss_pred EcCccceEEEEe------------eCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccCC
Q 004270 585 DVILARQIDAIH------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG 634 (764)
Q Consensus 585 d~~~~~~~~~~~------------~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~ 634 (764)
|++..++-+... ....+..+.|+|............ -+++-+....+.+
T Consensus 546 di~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~-w~~~id~~~~lp~ 606 (691)
T KOG2048|consen 546 DIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAH-WSCLIDFSLPLPS 606 (691)
T ss_pred ecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCc-EEEEEecCCCCCc
Confidence 995433221111 123488899998776665555444 4777776654443
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-35 Score=298.51 Aligned_cols=500 Identities=14% Similarity=0.170 Sum_probs=364.3
Q ss_pred CCcceEEEEEeCCeEEEEEC---CeEEEEe--cCceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccc
Q 004270 55 LPKKIRALASYRDYTFAAYG---NHIAVVK--RAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENL 127 (764)
Q Consensus 55 ~~~~I~~~~~~~~~~~~a~g---~~i~vw~--~~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~ 127 (764)
...++..++|+|..-++.++ +.|.+|| .+..+.++.+|.++|..+.| .+..++||+.|-.|+||++.+.++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-- 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-- 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee--
Confidence 35678999999997777664 4499998 47788889999999999998 689999999999999999999999
Q ss_pred cceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 004270 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHV 207 (764)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~i 207 (764)
+.++.+|...+.++.||+.- ..|+++|.|.+|+|||..+++++..+.||..-|.|..|+|..+.+++++-|.+|+|
T Consensus 86 --lftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 86 --LFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred --hhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 77788899999999999988 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEccC----------------------------CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-
Q 004270 208 HNVRY----------------------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR- 258 (764)
Q Consensus 208 wd~~~----------------------------~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~- 258 (764)
||+.. +..++....+|...|..++|+|.-. ++++|+.|..|++|.+...+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc
Confidence 99851 1123334456688999999999988 99999999999999986553
Q ss_pred -eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 259 -LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 259 -~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
.+.+.+ +|.+.|.++-|+|...++++.|.|++|+|||++..+ .+..++...+....++-+|..++++.|- |+-
T Consensus 241 WEvDtcr-gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----~v~tfrrendRFW~laahP~lNLfAAgH-DsG 314 (1202)
T KOG0292|consen 241 WEVDTCR-GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----SVQTFRRENDRFWILAAHPELNLFAAGH-DSG 314 (1202)
T ss_pred eeehhhh-cccCCcceEEecCccceeEecCCCccEEEEeccccc----ceeeeeccCCeEEEEEecCCcceeeeec-CCc
Confidence 345566 999999999999999999999999999999998874 4566666677889999999998666655 555
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee-ccee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-GEHI 416 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~ 416 (764)
+.+|.+...+....+.. +.++.. .+..++.+|+.+.+- ....
T Consensus 315 m~VFkleRErpa~~v~~-----------------------------------n~LfYv--kd~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 315 MIVFKLERERPAYAVNG-----------------------------------NGLFYV--KDRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred eEEEEEcccCceEEEcC-----------------------------------CEEEEE--ccceEEeeeccccccceeEe
Confidence 88888875544333222 112222 267788888876332 2222
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 494 (764)
++.......++.++.++|..+.+++.+ .+|.-.++.+........-.. .. ........+ |-..++..+---.
T Consensus 358 lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~---~~--~k~tG~~a~-fvarNrfavl~k~ 431 (1202)
T KOG0292|consen 358 LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK---DV--KKGTGEGAL-FVARNRFAVLDKS 431 (1202)
T ss_pred ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch---hh--hcCCCCceE-EEEecceEEEEec
Confidence 333333457889999999887666653 445666666654322111100 00 011111222 2222333332223
Q ss_pred CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270 495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (764)
Q Consensus 495 dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s 574 (764)
+..+.+=++.+. ..+.+........+-+...|.+|+. ....|.+||++..+.+..+. ...|.-+.||+|..+++-
T Consensus 432 ~~~v~ik~l~N~-vtkkl~~~~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAl 506 (1202)
T KOG0292|consen 432 NEQVVIKNLKNK-VTKKLLLPESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVAL 506 (1202)
T ss_pred CcceEEecccch-hhhcccCcccccceeeccCccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhh
Confidence 445555554432 2222233334445555555655554 35689999999998888876 457889999999988876
Q ss_pred EeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEE
Q 004270 575 SGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH 617 (764)
Q Consensus 575 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~ 617 (764)
-+ -.+|.|.+.+ -+.+..+...-.|.+-+|..+|-++.++.
T Consensus 507 l~-Kh~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~ 547 (1202)
T KOG0292|consen 507 LS-KHTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTL 547 (1202)
T ss_pred cc-cceEEEEecc-hhheecchheeEeeeceeccCceEEEEeh
Confidence 66 4678888844 44555554444588888888887777665
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-35 Score=288.24 Aligned_cols=463 Identities=14% Similarity=0.208 Sum_probs=342.8
Q ss_pred CCCCcceEEEEEeCCeEEEEE---CCeEEEEecCce--EEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcc
Q 004270 53 PQLPKKIRALASYRDYTFAAY---GNHIAVVKRAHQ--VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEE 125 (764)
Q Consensus 53 ~~~~~~I~~~~~~~~~~~~a~---g~~i~vw~~~~~--~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~ 125 (764)
..+..+|.++.++|..-++.+ .++|.+|+..++ ++.+.-..-+|.+..| -.+++++|+.|..|+|+++.+.+.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 346789999999999666543 567999987554 5557777788888877 478999999999999999999999
Q ss_pred cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCC
Q 004270 126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDG 203 (764)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg 203 (764)
+..++.|...+.+++.||.. .+++++|.|-+|++||.+.. .+.++|.||..-|.+++|.|. .+.+|+++-|+
T Consensus 90 ----V~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 90 ----VKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ----eEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 89999999999999999999 78999999999999999754 788999999999999999994 57999999999
Q ss_pred eEEEEEccCCceEEEEeccCCCCEEEEEEeeCC-CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCE
Q 004270 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 282 (764)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 282 (764)
+|++|++.+..+..++.+| ...|.|+.|-+.| +++|++|+.|.+|+|||..+..++.++. +|...|..+.|+|.-++
T Consensus 164 TVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPI 241 (794)
T ss_pred cEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcE
Confidence 9999999999999999865 7889999998865 4599999999999999999999999999 99999999999999999
Q ss_pred EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (764)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (764)
+++|+.||++|+|+-.+- ++...+.-....+.|++..+.++.++.|...|.+. ..+-.+.+...+.
T Consensus 242 iisgsEDGTvriWhs~Ty----~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd--------- 307 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTY----KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMD--------- 307 (794)
T ss_pred EEEecCCccEEEecCcce----ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeec---------
Confidence 999999999999965443 55556666678899999999888888888777554 3443332222211
Q ss_pred hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce-ee-cceeec----CCCCCCCCeEEEEEccCC
Q 004270 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF-VL-GEHILR----PCPENPTAVKACTISACG 436 (764)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~-~~~~~~----~~~~~~~~v~~~~~s~~g 436 (764)
... .-+-+.+..-..+.+-.+... .. ....+. ....-.-....++.+|+|
T Consensus 308 ------------------~~g------KIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNG 363 (794)
T KOG0276|consen 308 ------------------SNG------KIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNG 363 (794)
T ss_pred ------------------CCc------cEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCC
Confidence 100 000011111111111110000 00 000000 000111234467889999
Q ss_pred CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc
Q 004270 437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC 516 (764)
Q Consensus 437 ~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 516 (764)
++++++ .||.-.+|..-.-+ ..+.+.-....|.++....+.--.++.|+++ ++.+....+....
T Consensus 364 rfV~Vc-gdGEyiIyTala~R-------------nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~ 427 (794)
T KOG0276|consen 364 RFVVVC-GDGEYIIYTALALR-------------NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM 427 (794)
T ss_pred cEEEEe-cCccEEEEEeeehh-------------hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc
Confidence 988876 45666666532111 1344566778899997778888778999988 6666666665543
Q ss_pred ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
... .+ -|..|+....++.+++||.+++++++++.-. ...+.|+.+|.+++.++.|. .++..
T Consensus 428 ~~e--~i--~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 428 SAE--GI--FGGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred cee--ee--cCCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc-eeEEE
Confidence 311 11 2445555566778999999999999998743 35678999999888887654 44443
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=261.95 Aligned_cols=293 Identities=18% Similarity=0.308 Sum_probs=235.9
Q ss_pred eEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccC---CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270 172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY---DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg 247 (764)
..++.+++|.+.+..++|+|. |..||+++.|..|++|+... -.+...+...|+..|++++|+|.|+ +|++|+.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccc
Confidence 456788999999999999998 88999999999999999984 3345556667789999999999999 999999999
Q ss_pred cEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270 248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (764)
Q Consensus 248 ~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (764)
++.||.-..+ +++.++. +|.+.|.+++|+++|++|++++.|++|-+|.++ .+.+..+...+.+|...|..+.|+|.
T Consensus 84 t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred eEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEEeeeccccccccEEEEcCC
Confidence 9999986654 6778888 999999999999999999999999999999988 45667889999999999999999998
Q ss_pred CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (764)
..+|++++.|.+|++|+-..+
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~d----------------------------------------------------------- 182 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDD----------------------------------------------------------- 182 (312)
T ss_pred cceeEEeccCCeEEEEeecCC-----------------------------------------------------------
Confidence 889999999999999985311
Q ss_pred EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (764)
+.+..+. ++ .+|...|.+++|++.
T Consensus 183 ------------------------------ddW~c~~------------------tl--------~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 183 ------------------------------DDWECVQ------------------TL--------DGHENTVWSLAFDNI 206 (312)
T ss_pred ------------------------------CCeeEEE------------------Ee--------cCccceEEEEEecCC
Confidence 1111111 11 267778888888888
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC------eEEE-EeecCCC
Q 004270 486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL------RMVR-KFEGHTD 558 (764)
Q Consensus 486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~------~~~~-~~~~h~~ 558 (764)
|..|++++.|++++||...+. ....+...+..++|. ...||+++.|+.|++|..... +++. .-..|..
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred CceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 888888888888888875421 111223566777776 667888888888888865532 1111 2346889
Q ss_pred CeeEEEEcCC-CcEEEEEeCCCcEEEEEcC
Q 004270 559 RITDFCFSED-GKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 559 ~i~~l~~s~d-g~~l~s~s~dg~i~iwd~~ 587 (764)
.|++++|.|. ...|++++.||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999994 6789999999999999875
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-37 Score=280.31 Aligned_cols=289 Identities=21% Similarity=0.337 Sum_probs=261.2
Q ss_pred eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcE
Q 004270 259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338 (764)
Q Consensus 259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i 338 (764)
+...+. +|..+|+.+-|+|+...+++++.|++|++||+.++ .+.+.++||...+..++|+..|+++++++.|=.+
T Consensus 100 l~~~l~-g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 100 LVQKLA-GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG----ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred chhhhh-ccccceeeeeeccCceEEEEecCCceEEEEEccch----hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 344444 79999999999999999999999999999998877 5688889999999999999999999999999999
Q ss_pred EEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeec
Q 004270 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (764)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 418 (764)
.+||..+.... +.
T Consensus 175 ~LWd~~~~~~c-------------------------------------------------------------------~k 187 (406)
T KOG0295|consen 175 KLWDFDTFFRC-------------------------------------------------------------------IK 187 (406)
T ss_pred hheeHHHHHHH-------------------------------------------------------------------HH
Confidence 99997653111 11
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeE
Q 004270 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498 (764)
Q Consensus 419 ~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v 498 (764)
...+|...|.+++|-|.|+++++++.|.+|+.|++.+|..+.++. +|...|..++.+.||..+++++.|.+|
T Consensus 188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~--------~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP--------GHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc--------CchHhEEEEEecCCeeEEEecCCCceE
Confidence 122566889999999999999999999999999999999999996 999999999999999999999999999
Q ss_pred EEEECCCCCeeeeEecC-cceEEEEEeec---------------CCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE
Q 004270 499 KVWDFKGRDLKSRWEVG-CSLVKIVYHRV---------------NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (764)
Q Consensus 499 ~iwd~~~~~~~~~~~~~-~~i~~~~~s~~---------------~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~ 562 (764)
++|-+.++++...+..+ .++.+++|.|. +.++.+++.|++|++||+.++.++.++.||.+.|..
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999999888887655 78889988774 248999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 563 l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
++|+|.|+||+++..|+++++||++++++...+..|.. ++++.|+.+-.+++||+.|. .+++|.-
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq-t~KvwEc 405 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWEC 405 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc-eeeeeec
Confidence 99999999999999999999999999999999987776 99999999999999999999 6999974
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.6e-37 Score=310.54 Aligned_cols=281 Identities=21% Similarity=0.364 Sum_probs=242.0
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
-+.+++..-...++|..|++|+..||.|..|..|++|.+... .+..++.. ++-. .+=+++.|-.+.+
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~--------~~l~----~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA--------SDLS----NIDTESADVDVDM 435 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch--------hhhc----cccccccchhhhh
Confidence 356677666788999999999999999999999999998754 33333322 1111 1223444555777
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (764)
.|-.+......+. +|.++|.++.|+|+.++|++++.|+++|+|.+++. ..+....||..||..+.|+|-|-+++|
T Consensus 436 ~D~~~~~~~~~L~-GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~GyYFat 510 (707)
T KOG0263|consen 436 LDDDSSGTSRTLY-GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPRGYYFAT 510 (707)
T ss_pred ccccCCceeEEee-cCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCCceEEEe
Confidence 7777776677777 99999999999999999999999999999999887 566677799999999999999999999
Q ss_pred EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (764)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (764)
++.|++.++|........
T Consensus 511 as~D~tArLWs~d~~~Pl-------------------------------------------------------------- 528 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPL-------------------------------------------------------------- 528 (707)
T ss_pred cCCCceeeeeecccCCch--------------------------------------------------------------
Confidence 999999999986532211
Q ss_pred ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
+.+ .+|-+.|.|+.|+|+..++++
T Consensus 529 ------------------------------------------------Rif--------aghlsDV~cv~FHPNs~Y~aT 552 (707)
T KOG0263|consen 529 ------------------------------------------------RIF--------AGHLSDVDCVSFHPNSNYVAT 552 (707)
T ss_pred ------------------------------------------------hhh--------cccccccceEEECCccccccc
Confidence 111 389999999999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270 492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~ 570 (764)
||.|.+||+||..+|..++.+.+| ++|++++|||+|++||+|+.||.|.+||+.+++++..+.+|++.|.++.||.||.
T Consensus 553 GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 553 GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN 632 (707)
T ss_pred CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence 999999999999999999999877 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCc
Q 004270 571 WLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 571 ~l~s~s~dg~i~iwd~~~ 588 (764)
.||+|+.|.+|++||+..
T Consensus 633 vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEecCCCCeEEEEEchh
Confidence 999999999999999864
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-37 Score=279.87 Aligned_cols=307 Identities=20% Similarity=0.351 Sum_probs=268.5
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
...+.+.+.+|..+|+.+-|.|+-..+++++.|++|++||..+++....+++| ...+..++|+..|+ +|++++.|-.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-t~sv~di~~~a~Gk-~l~tcSsDl~~ 174 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-TDSVFDISFDASGK-YLATCSSDLSA 174 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-ccceeEEEEecCcc-EEEecCCccch
Confidence 44567778899999999999999999999999999999999999998888877 66799999999999 99999999999
Q ss_pred EEEECCC-ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 250 ~iwd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
.+||..+ .+++..+. +|...|.++.|.|.|.++++++.|++|+.|+++++ .++..+.+|...|..++.+.||..
T Consensus 175 ~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred hheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccc----eeEEeccCchHhEEEEEecCCeeE
Confidence 9999987 45666666 89999999999999999999999999999999988 788999999999999999999999
Q ss_pred EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (764)
+++++.|.++++|-+.+..+..++.
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~lR------------------------------------------------------- 274 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAELR------------------------------------------------------- 274 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhhh-------------------------------------------------------
Confidence 9999999999999988775544432
Q ss_pred ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE
Q 004270 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (764)
.|.-++.+++|-|...+=-+... .+.. ..+++
T Consensus 275 -------------~hEh~vEci~wap~~~~~~i~~a--------------------------t~~~---------~~~~~ 306 (406)
T KOG0295|consen 275 -------------EHEHPVECIAWAPESSYPSISEA--------------------------TGST---------NGGQV 306 (406)
T ss_pred -------------ccccceEEEEecccccCcchhhc--------------------------cCCC---------CCccE
Confidence 35567778877765321100000 0000 04578
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270 489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 489 l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~ 567 (764)
+.+++.|++|++||+.++.++.++..+ ..|..++|+|.|+||+++.+|+++++||++++++...+..|..-|+++.|..
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred EEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 999999999999999999999999877 8999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEc
Q 004270 568 DGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 568 dg~~l~s~s~dg~i~iwd~ 586 (764)
+..+++||+-|.++++|.-
T Consensus 387 ~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCceEEeccccceeeeeec
Confidence 9999999999999999974
No 38
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.9e-34 Score=273.95 Aligned_cols=468 Identities=15% Similarity=0.219 Sum_probs=353.0
Q ss_pred ecCCeEEEEEEeCC--------eEEEEecCCCeEEEecCCCCcceEEEEEeCC--eEEEEE-CC--e--EEEEecCce--
Q 004270 23 RLGTENFVTVSVGK--------AFHIYNCAKLNLVLVGPQLPKKIRALASYRD--YTFAAY-GN--H--IAVVKRAHQ-- 85 (764)
Q Consensus 23 ~~~~~~~~~~~~~~--------~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~--~~~~a~-g~--~--i~vw~~~~~-- 85 (764)
.|+...++++...+ .++|||..+++-+++.......|+|+|||+- +.++.. .. . +.|||-.++
T Consensus 113 HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~ 192 (626)
T KOG2106|consen 113 HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK 192 (626)
T ss_pred cCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc
Confidence 35566666666655 3899999999999998888999999999975 444433 22 2 888885443
Q ss_pred EEEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccccceeeEec-CCccccEEEEeCCCCCCEEEEEeCCC
Q 004270 86 VATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEG 161 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (764)
....+.-...|....| +.+.+++++ .|.+.+|+..++.+... ...++. ..+++.++.|.+++ -+++|..+|
T Consensus 193 ~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~eng---dviTgDS~G 267 (626)
T KOG2106|consen 193 LGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENG---DVITGDSGG 267 (626)
T ss_pred cCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCC---CEEeecCCc
Confidence 3335555556666665 567777776 79999999998876322 122322 33677788899998 499999999
Q ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEE
Q 004270 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLL 240 (764)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l 240 (764)
.|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..|| ..-+.++.... ...++|+.++=.. . -+
T Consensus 268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~-di 342 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--G-DI 342 (626)
T ss_pred eEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCC--C-cE
Confidence 999999988888888889999999999999997555 99999999999 33333333332 2256788776432 2 26
Q ss_pred EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (764)
+.|...+.|.-=.++++-.+... +|......++.+|+.+.+++++.|+.+++|+ .. ++... ..-..++.|+
T Consensus 343 ~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~----k~~wt-~~~~d~~~~~ 413 (626)
T KOG2106|consen 343 LVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH----KLEWT-KIIEDPAECA 413 (626)
T ss_pred EEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc--CC----ceeEE-EEecCceeEe
Confidence 67777777777777766554444 6999999999999999999999999999997 22 22222 2346788999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
.|+|.| .++.|...|...+.|..+...... +.
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~--------------------------------------------~~--- 445 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTI--------------------------------------------HT--- 445 (626)
T ss_pred eccCcc-eEEEeeccceEEEEecccceeEEE--------------------------------------------Ee---
Confidence 999999 999999999999999876322111 10
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc-ceecCccccccccccCcEEE
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVG 479 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~ 479 (764)
...+++++.++|+|.++++|+.|+.|++|.+...... .... ..|...|+.
T Consensus 446 ----------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-------k~~gs~ith 496 (626)
T KOG2106|consen 446 ----------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-------KCSGSPITH 496 (626)
T ss_pred ----------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-------eecCceeEE
Confidence 1378999999999999999999999999998654433 3332 345589999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-------------------cCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270 480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------------------VGCSLVKIVYHRVNGLLATVADDLVIR 540 (764)
Q Consensus 480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------------~~~~i~~~~~s~~~~~la~~~~d~~i~ 540 (764)
+.|++|++++.+-+.|-.|..|.-...+.....+ ....+..++-+.+.+++|+|.+.|.|+
T Consensus 497 LDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~ 576 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVH 576 (626)
T ss_pred eeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEE
Confidence 9999999999999999999999433322221111 124456666777888999999999999
Q ss_pred EEEccCC---eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 541 LFDVVAL---RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 541 v~d~~~~---~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
+|...-- ....++.+|.+.|++++|..+...|++.+.|..|..|++
T Consensus 577 lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 577 LFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9987543 335677899999999999998889998889999999986
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-37 Score=311.86 Aligned_cols=283 Identities=25% Similarity=0.383 Sum_probs=237.1
Q ss_pred eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270 215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (764)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v 294 (764)
+..++... ...++|..|++|+. +||.|..|..|++|.+...++ ..++ +...+. .+=+.+.|-.+.+
T Consensus 370 c~YT~~nt-~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl-~~lk--~~~~l~---------~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 370 CMYTFHNT-YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKL-KKLK--DASDLS---------NIDTESADVDVDM 435 (707)
T ss_pred EEEEEEEc-CCcceeEeecCCcc-hhhccccccEEEEEecchhhh-cccc--chhhhc---------cccccccchhhhh
Confidence 34445444 56799999999999 999999999999999876533 2332 222111 1223344444555
Q ss_pred EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
.|.+.. ...+.+.||.++|..+.|+|+.++|++++.|+++|+|++.+....
T Consensus 436 ~D~~~~----~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~------------------------- 486 (707)
T KOG0263|consen 436 LDDDSS----GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL------------------------- 486 (707)
T ss_pred ccccCC----ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE-------------------------
Confidence 544433 344557899999999999999999999999999999998643211
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~ 454 (764)
+
T Consensus 487 ------------------------------------------------------------------V------------- 487 (707)
T KOG0263|consen 487 ------------------------------------------------------------------V------------- 487 (707)
T ss_pred ------------------------------------------------------------------E-------------
Confidence 0
Q ss_pred CCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEE
Q 004270 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATV 533 (764)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~ 533 (764)
.+ .+|..+|..+.|+|.|-++||++.|++-++|.....++++.+..+ +.+.|+.|+|++.|+|+|
T Consensus 488 ------~y--------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG 553 (707)
T KOG0263|consen 488 ------IY--------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG 553 (707)
T ss_pred ------Ee--------cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC
Confidence 01 389999999999999999999999999999999999999999888 899999999999999999
Q ss_pred eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCe
Q 004270 534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDV 612 (764)
Q Consensus 534 ~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~ 612 (764)
+.|.+||+||+.+|..++.|.||.++|++++|||+|++|++|+.||.|.+||+.+|+++..+..|.. |.++.||.||..
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999988865 999999999999
Q ss_pred EEEEEeCCCeEEEEecccccCC
Q 004270 613 LATAHVDQNGVYLWVNRCMFSG 634 (764)
Q Consensus 613 lat~~~d~~~i~lW~~~~~~~~ 634 (764)
||++|.|. +|++||+...+..
T Consensus 634 Lasgg~Dn-sV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 634 LASGGADN-SVRLWDLTKVIEL 654 (707)
T ss_pred EEecCCCC-eEEEEEchhhccc
Confidence 99999999 7999998765544
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.9e-37 Score=283.84 Aligned_cols=280 Identities=21% Similarity=0.386 Sum_probs=244.9
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
+.+|..+.|.|+|+ .|++|+..|.+.+|+..+......++ +|..+|+++.|++++.++++|+.+|.|++|+.+..
T Consensus 96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--- 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--- 170 (464)
T ss_pred ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchh---
Confidence 46899999999999 89999999999999985555444455 99999999999999999999999999999976654
Q ss_pred ceeeEeccCC-CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270 304 PRLLRFRSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (764)
Q Consensus 304 ~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (764)
.++....| ...|++++|+|+...+++++.||+|+|||....+....
T Consensus 171 --nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v------------------------------- 217 (464)
T KOG0284|consen 171 --NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV------------------------------- 217 (464)
T ss_pred --hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-------------------------------
Confidence 23333444 49999999999989999999999999999764432211
Q ss_pred ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
T Consensus 218 -------------------------------------------------------------------------------- 217 (464)
T KOG0284|consen 218 -------------------------------------------------------------------------------- 217 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEE
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL 541 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v 541 (764)
+.+|.-.|.+++|+|...+++++|.|..|++||.+++.++.++..+ ..|..+.|++++++|++++.|..+++
T Consensus 218 -------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 218 -------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred -------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 1389999999999999999999999999999999999999998776 88999999999999999999999999
Q ss_pred EEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCccceEEEEe--eCCceEEEEEcCCCCeEEEEEe
Q 004270 542 FDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHV 618 (764)
Q Consensus 542 ~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~l~~sp~g~~lat~~~ 618 (764)
||+++.+.+..+++|...|++++|+| ...+|.+|+.||.|..|.+...+++..+. +...|++++|+|=|..|++|+.
T Consensus 291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 99999999999999999999999999 44678899999999999999767666654 3445999999999999999999
Q ss_pred CCCeEEEEecc
Q 004270 619 DQNGVYLWVNR 629 (764)
Q Consensus 619 d~~~i~lW~~~ 629 (764)
|. ++++|.-.
T Consensus 371 d~-t~rfw~r~ 380 (464)
T KOG0284|consen 371 DR-TVRFWTRN 380 (464)
T ss_pred Cc-ceeeeccC
Confidence 98 69999854
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.9e-36 Score=271.93 Aligned_cols=284 Identities=20% Similarity=0.386 Sum_probs=255.0
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
.+|.+.|.|+++.|.++ ++++|+.|++|+|||+.+|++..++. +|-..|..+++++..++|++++.|+.|+.||++.+
T Consensus 148 ~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 45589999999999988 99999999999999999999999998 99999999999999999999999999999999887
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
+.++...||-..|.|++.+|.-..|++|+.|.++|+||+++...+..
T Consensus 226 ----kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~----------------------------- 272 (460)
T KOG0285|consen 226 ----KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV----------------------------- 272 (460)
T ss_pred ----hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-----------------------------
Confidence 68888899999999999999889999999999999999875432111
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
T Consensus 273 -------------------------------------------------------------------------------- 272 (460)
T KOG0285|consen 273 -------------------------------------------------------------------------------- 272 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeE
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVI 539 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i 539 (764)
+ .+|...|..+.+.|.+..+++|+.|++|++||+..++...++.++ ..+.+++.+|....+|+++.| .|
T Consensus 273 -l--------~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-ni 342 (460)
T KOG0285|consen 273 -L--------SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NI 342 (460)
T ss_pred -e--------cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cc
Confidence 1 389999999999998889999999999999999999988888776 889999999999999999877 68
Q ss_pred EEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE---------eeCCceEEEEEcCCC
Q 004270 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------HVDVSITALSLSPNM 610 (764)
Q Consensus 540 ~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~~~~v~~l~~sp~g 610 (764)
+-|++..+..+..+.+|..-|++++...|| ++++|+..|.+.+||.++|...+.. .....|.+.+|...|
T Consensus 343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred eeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 999999999999999999999999999887 7888999999999999998655443 223459999999999
Q ss_pred CeEEEEEeCCCeEEEEecccc
Q 004270 611 DVLATAHVDQNGVYLWVNRCM 631 (764)
Q Consensus 611 ~~lat~~~d~~~i~lW~~~~~ 631 (764)
..|++|..|. +|++|.-+..
T Consensus 422 ~rlit~eadK-tIk~~keDe~ 441 (460)
T KOG0285|consen 422 SRLITGEADK-TIKMYKEDEH 441 (460)
T ss_pred ceEEeccCCc-ceEEEecccc
Confidence 9999999999 6999986543
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=261.82 Aligned_cols=282 Identities=18% Similarity=0.337 Sum_probs=248.1
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (764)
.+|++.|..+.|+|+|. +||+|+.|..|.+|+.... +....+. +|.++|..+.|.+|++.+++++.|.+++.||.++
T Consensus 44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 45699999999999999 9999999999999996544 4555666 9999999999999999999999999999999988
Q ss_pred CCCCceeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270 300 TDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (764)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (764)
+ +..+..++|..-|+.+..+.-| .++.+++.|+++++||+++....+.+.
T Consensus 122 G----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------------------------- 172 (338)
T KOG0265|consen 122 G----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------------------------- 172 (338)
T ss_pred c----eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------
Confidence 7 6788889999999999865544 456688899999999998765554432
Q ss_pred eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc
Q 004270 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (764)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~ 458 (764)
.+..++++.|...+..+.+|.-|+.|++||+..+..
T Consensus 173 --------------------------------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 173 --------------------------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred --------------------------------------------cceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 237889999999999999999999999999998888
Q ss_pred cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CeeeeEecC-----cceEEEEEeecCCE
Q 004270 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG-----CSLVKIVYHRVNGL 529 (764)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~-----~~i~~~~~s~~~~~ 529 (764)
...+. +|...|+++..+++|.++.+-+.|.++++||++.. +++..+..+ .....++|+|++..
T Consensus 209 ~~~ls--------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 209 LYTLS--------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eEEee--------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 88775 99999999999999999999999999999998743 345555543 45678899999999
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 530 la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
+.+|+.|..+++||....+.+..+.||.+.|+.++|+|...+|.+++.|.+|++=+
T Consensus 281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999999999999999999999999999999999999998744
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-36 Score=277.32 Aligned_cols=290 Identities=21% Similarity=0.326 Sum_probs=252.9
Q ss_pred eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (764)
Q Consensus 262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~ 341 (764)
.+. .|...|.-+.|+++|++||+++.|.+..+|.+..... .++..++.+|..+|..+.|+||.+++++|+.|..+++|
T Consensus 219 il~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 344 7999999999999999999999999999999876544 57788899999999999999999999999999999999
Q ss_pred EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (764)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (764)
|+.++.....+..
T Consensus 297 Dv~tgd~~~~y~~------------------------------------------------------------------- 309 (519)
T KOG0293|consen 297 DVDTGDLRHLYPS------------------------------------------------------------------- 309 (519)
T ss_pred cCCcchhhhhccc-------------------------------------------------------------------
Confidence 9988766554432
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
++...+.+++|.|||..+++|+.|+.+..|++.... ..... ......|.+++..+||+++++.+.|..++++
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~-------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~ 381 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWE-------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLY 381 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccc-------ccccceeEEEEEcCCCcEEEEEecccceeee
Confidence 233788999999999999999999999999997654 22222 1233569999999999999999999999999
Q ss_pred ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC--eeEEEEcC-CCcEEEEEeCC
Q 004270 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSE-DGKWLLSSGMD 578 (764)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~--i~~l~~s~-dg~~l~s~s~d 578 (764)
+..+...+..+..+.+|++.++|.|++++.+.-.+..+++||++..+.++++.||... |-.-+|-- +..++++||+|
T Consensus 382 ~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 382 NREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred chhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 9998888878888899999999999999999999999999999999999999999865 33335644 55899999999
Q ss_pred CcEEEEEcCccceEEEEeeCCc-eEEEEEcC-CCCeEEEEEeCCCeEEEEecc
Q 004270 579 GSLRIWDVILARQIDAIHVDVS-ITALSLSP-NMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 579 g~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp-~g~~lat~~~d~~~i~lW~~~ 629 (764)
+.|+||+..+|+++..+.+|.. |++++|+| +-.++|+|+.|+ +|+||.+.
T Consensus 462 ~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg~~ 513 (519)
T KOG0293|consen 462 SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWGPS 513 (519)
T ss_pred ceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEecCC
Confidence 9999999999999999999986 99999999 567889999888 79999875
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-34 Score=288.85 Aligned_cols=408 Identities=17% Similarity=0.283 Sum_probs=314.9
Q ss_pred CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (764)
Q Consensus 136 ~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~ 215 (764)
....+..+.|||.. ..++++-..|.|++||.+-+.++..|..|.++|..++|+|.+.++++|+.|-.|++|+.++.++
T Consensus 8 kSsRvKglsFHP~r--PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKR--PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccccceecCCCC--CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 44556778999999 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEE
Q 004270 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295 (764)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw 295 (764)
+.++.+| -.-|+.+.|++.-. .+++++.|.+|+||+..+++++..+. +|...|.|.+|+|....++++|-|.+||||
T Consensus 86 lftL~GH-lDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 86 LFTLLGH-LDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred hhhhccc-cceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccceEEEecccceEEEE
Confidence 9999887 78999999999888 89999999999999999999999999 999999999999999999999999999999
Q ss_pred EecCCC------C-------------------CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 296 IFDTTD------G-------------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 296 ~~~~~~------~-------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
|+..-. + .......+.||...|+.++|+|.-..+++|+.|+.|++|.....+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--- 239 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--- 239 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc---
Confidence 985321 0 112234568999999999999999999999999999999875321
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
.| ....+.+|...|+++
T Consensus 240 -----------------------------------------------------aW----------EvDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 240 -----------------------------------------------------AW----------EVDTCRGHYNNVSSV 256 (1202)
T ss_pred -----------------------------------------------------ce----------eehhhhcccCCcceE
Confidence 12 233455888999999
Q ss_pred EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC------
Q 004270 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK------ 504 (764)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~------ 504 (764)
-|+|..+.+++.+.|+.|++||+.....+.++. ...+....++.+|..++++.|- |+-+.+|.++
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------rendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~ 327 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------RENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAY 327 (1202)
T ss_pred EecCccceeEecCCCccEEEEecccccceeeee--------ccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceE
Confidence 999999999999999999999999999888885 4566788888888887666554 4444444443
Q ss_pred ---------------------CCCee--eeEecC----cceEEEEEeecCCEEEEEe--CCCeEEEEEccCC--------
Q 004270 505 ---------------------GRDLK--SRWEVG----CSLVKIVYHRVNGLLATVA--DDLVIRLFDVVAL-------- 547 (764)
Q Consensus 505 ---------------------~~~~~--~~~~~~----~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~-------- 547 (764)
+.+-. ..++.. .+..++.++|..+.+..++ +++.--++.+...
T Consensus 328 ~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~ 407 (1202)
T KOG0292|consen 328 AVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK 407 (1202)
T ss_pred EEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch
Confidence 22111 111112 5677888988766554442 3344444433211
Q ss_pred ---------------------------eEEEEeec-------CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270 548 ---------------------------RMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593 (764)
Q Consensus 548 ---------------------------~~~~~~~~-------h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~ 593 (764)
-.++.+.. -...+..|-+..+|.+|+.. ...|.++|++..+.+.
T Consensus 408 ~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~ 485 (1202)
T KOG0292|consen 408 DVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVG 485 (1202)
T ss_pred hhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEE
Confidence 00011110 00123344455556555432 4469999999888888
Q ss_pred EEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 594 ~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
.++. +.|.-+.||+|+.++|.-+.. +|.|.+-
T Consensus 486 si~~-s~vkyvvws~dm~~vAll~Kh--~i~i~~k 517 (1202)
T KOG0292|consen 486 SIKV-SKVKYVVWSNDMSRVALLSKH--TITIADK 517 (1202)
T ss_pred EEec-CceeEEEEcCccchhhhcccc--eEEEEec
Confidence 7765 358889999999888776654 3666654
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.8e-34 Score=250.39 Aligned_cols=294 Identities=18% Similarity=0.275 Sum_probs=244.0
Q ss_pred eeeEecCCccccEEEEeCC-CCCCEEEEEeCCCcEEEEeCCC---CeEEEEE-cCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270 130 VGHVKLDDKFTPTCIMHPD-TYLNKVIVGSQEGSLQLWNIST---KKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGK 204 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~-~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~-~~h~~~i~~~~~sp~~~~la~g~~dg~ 204 (764)
++.++.+.+.+..+++||. | ..|++++.|+.|++|+... -.+...+ .+|...|.+++|+|.|++||+|+.|.+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g--~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKG--VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred EEeecCCCCcEEEEEeccCCc--eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 5667778888999999998 6 6899999999999999874 3444444 479999999999999999999999999
Q ss_pred EEEEEccCC--ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc---eeeeeeecccccCeeEEEEecC
Q 004270 205 IHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFAN 279 (764)
Q Consensus 205 i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~h~~~v~~l~~~~~ 279 (764)
+.||.-..+ +++..+.+| ...|.+++|+++|. +||+++.|..|.||.+..+ .+...+. .|...|..+.|+|.
T Consensus 85 ~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeecc-ccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCC
Confidence 999986644 466666665 88999999999999 9999999999999998754 5677777 89999999999999
Q ss_pred CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhH
Q 004270 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK 359 (764)
Q Consensus 280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 359 (764)
..+|+++|.|++|++|+.+. .....+...+.+|...|.+++|++.|..|++++.|+++++|.....-
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------ 228 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------ 228 (312)
T ss_pred cceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------
Confidence 99999999999999998765 66788999999999999999999999999999999999999854211
Q ss_pred HHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEE
Q 004270 360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 439 (764)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 439 (764)
...|...+..+++. ...+
T Consensus 229 ------------------------------------------------------------~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 229 ------------------------------------------------------------SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred ------------------------------------------------------------chhcccceEeeeec--ccce
Confidence 01233667778887 5689
Q ss_pred EEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECC
Q 004270 440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 440 ~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~ 504 (764)
++++.|+.|++|....+.....+... ......|...|++++|+|. ..+|++++.||.|++|.+.
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccCCCEEEEEEecCCCCCchHHHH-HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999999999987654222222110 1112479999999999994 6789999999999999864
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-35 Score=272.22 Aligned_cols=295 Identities=17% Similarity=0.271 Sum_probs=242.9
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce---EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~ 248 (764)
+..+.+..|...|+-+.||++|++||+++.|.+..+|.+..... ..++.++ ..+|..+.||||.+ +|++++.+..
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDdr-yLlaCg~~e~ 292 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDDR-YLLACGFDEV 292 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCCC-eEEecCchHh
Confidence 34456788999999999999999999999999999999887655 5555554 78999999999999 7778888888
Q ss_pred EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC-CCCCeeEEEecCCC
Q 004270 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGR 327 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~ 327 (764)
+.+||..+|.....+..+|...+.+++|.|||..+++|+.|+++..|+++... +....+- ...|.+++..+||+
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-----hhcccccccceeEEEEEcCCCc
Confidence 99999999999999987778999999999999999999999999999988652 2222222 25688999999999
Q ss_pred EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (764)
Q Consensus 328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (764)
++++.+.|..+++++..+......+
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~li------------------------------------------------------- 392 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLI------------------------------------------------------- 392 (519)
T ss_pred EEEEEecccceeeechhhhhhhccc-------------------------------------------------------
Confidence 9999999999999997643322111
Q ss_pred cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (764)
....+++++++|.+|+++++.-.+..+++||++....+..+. +|.. +.
T Consensus 393 --------------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~--------Ghkq----------~~ 440 (519)
T KOG0293|consen 393 --------------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF--------GHKQ----------GH 440 (519)
T ss_pred --------------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh--------cccc----------cc
Confidence 123789999999999999999999999999999877777775 6653 34
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 488 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~ 567 (764)
+++-.+..| .+..++|+|++|+.|+||+..+++++.++.||...|++++|+|
T Consensus 441 fiIrSCFgg----------------------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 441 FIIRSCFGG----------------------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred eEEEeccCC----------------------------CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 444332211 1256889999999999999999999999999999999999999
Q ss_pred C-CcEEEEEeCCCcEEEEEcCc
Q 004270 568 D-GKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 568 d-g~~l~s~s~dg~i~iwd~~~ 588 (764)
. -.++|+||.||+||||-...
T Consensus 493 ~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 493 ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCHHHhhccCCCCeEEEecCCc
Confidence 5 46789999999999998753
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.8e-36 Score=278.97 Aligned_cols=283 Identities=19% Similarity=0.309 Sum_probs=248.9
Q ss_pred ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE
Q 004270 138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV 217 (764)
Q Consensus 138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~ 217 (764)
..+..+.+.|+| +.|++|+..|.+.+||..+...-..++.|.++|+++.|++++.++++|+.+|.|++|+.. ...+.
T Consensus 97 c~V~~v~WtPeG--RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk 173 (464)
T KOG0284|consen 97 CPVNVVRWTPEG--RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVK 173 (464)
T ss_pred cceeeEEEcCCC--ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhH
Confidence 345677899999 899999999999999985555445567999999999999999999999999999999976 44556
Q ss_pred EEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (764)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~ 297 (764)
.+..+|...|++++|+|+.. .+++++.||+|+|||....+....+. +|.-.|.+++|+|...+++++|.|+.|++||.
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 66667678999999999777 89999999999999999998888887 99999999999999999999999999999987
Q ss_pred cCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (764)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (764)
.+. .++.++.+|...|..+.|.+++++|+++|.|..++++|+++.+..+.+
T Consensus 252 rSg----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~------------------------- 302 (464)
T KOG0284|consen 252 RSG----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY------------------------- 302 (464)
T ss_pred CCc----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-------------------------
Confidence 766 678888999999999999999999999999999999999754433332
Q ss_pred EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCC
Q 004270 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSG 456 (764)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~ 456 (764)
.+|...+++++|+|.. .++.+|+.||.|..|.+...
T Consensus 303 -------------------------------------------r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~ 339 (464)
T KOG0284|consen 303 -------------------------------------------RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE 339 (464)
T ss_pred -------------------------------------------hcchhhheeeccccccccceeeccCCCceEEEecccc
Confidence 2567899999999965 67889999999999999866
Q ss_pred cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..+.... .+|...|.+++++|-|..|++|+.|.++++|.-.
T Consensus 340 ~p~~~i~-------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 340 EPLGEIP-------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccCCC-------cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 6666655 5999999999999999999999999999999754
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=264.79 Aligned_cols=295 Identities=17% Similarity=0.262 Sum_probs=259.0
Q ss_pred EEEecccccceEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270 86 VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (764)
.+.+.||.+.|.+++++ ..++++++.|++++|||+.++++ ..++..|...+..+++++-. .++++++.|+.|
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----kltltGhi~~vr~vavS~rH--pYlFs~gedk~V 217 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQV 217 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE----EEeecchhheeeeeeecccC--ceEEEecCCCee
Confidence 34489999999999985 78999999999999999999999 67788888888899999988 799999999999
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg 243 (764)
+.||++..+.++.+.||-+.|.|++..|.-+.|++|+.|..+++||+++...+..+.+| ..+|.++.+.|-.. .+++|
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dp-qvit~ 295 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDP-QVITG 295 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCC-ceEEe
Confidence 99999999999999999999999999999999999999999999999999999999876 89999999998776 79999
Q ss_pred eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
+.|++|++||+..|+...++. .|...|.+++.+|....+++++.|+ |+-|++..+ ..+..+.+|..-+++++.+
T Consensus 296 S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g----~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG----EFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc----chhhccccccceeeeeeec
Confidence 999999999999999999998 8999999999999999999999885 899987665 5666688999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
.|+ ++++|+..|.+.+||.+++...+.....
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~------------------------------------------------ 400 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI------------------------------------------------ 400 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCccccccccc------------------------------------------------
Confidence 776 7899999999999999876543332110
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~ 455 (764)
.....-.....|.+.+|...|..|++|..|.+|.+|.-..
T Consensus 401 ------------vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 401 ------------VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ------------ccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 0000012236789999999999999999999999997653
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-34 Score=256.29 Aligned_cols=298 Identities=18% Similarity=0.274 Sum_probs=256.6
Q ss_pred ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC-CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 004270 127 LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI-STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI 205 (764)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i 205 (764)
..|...+..|.+.+.++.|+|++ ..+++|+.|..|.+|++ ...+....+++|.++|..+.|.+|++.|++++.|.+|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~g--s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDG--SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCC--CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 34566677889999999999999 89999999999999995 4567788899999999999999999999999999999
Q ss_pred EEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEE
Q 004270 206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285 (764)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 285 (764)
+.||+++|+.++.++.+ ..-|.++.-+.-|..++.+|+.|+++++||+++...++++. ..-.++++.|...+..+++
T Consensus 115 ~~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred EEEecccceeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceee
Confidence 99999999999999887 78899998666777788999999999999999999888886 5678999999999999999
Q ss_pred EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (764)
Q Consensus 286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 365 (764)
|+-|+.|++||+... ..+..+.||..+|+.+..+++|.++++-+.|.++++||++.......
T Consensus 192 ggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R-------------- 253 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR-------------- 253 (338)
T ss_pred ccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc--------------
Confidence 999999999998776 46777889999999999999999999999999999999875432211
Q ss_pred chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 004270 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445 (764)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~ 445 (764)
.+.++.-.. + ........++|+|+++++..|+.|
T Consensus 254 -----------------------------------~v~if~g~~-----h------nfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 254 -----------------------------------CVKIFQGHI-----H------NFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred -----------------------------------eEEEeecch-----h------hhhhhcceeeccCCCCcccccccc
Confidence 111111100 0 112345568999999999999999
Q ss_pred CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
..+++||..+...+..++ +|.+.|.+++|+|....+.+++.|.+|.+=
T Consensus 288 r~vyvwd~~~r~~lyklp--------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 288 RFVYVWDTTSRRILYKLP--------GHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ceEEEeecccccEEEEcC--------CcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999999999888877775 999999999999999999999999998763
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.3e-35 Score=280.77 Aligned_cols=288 Identities=20% Similarity=0.334 Sum_probs=254.6
Q ss_pred eeeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 258 RLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
+.+.++. +|...|+++.|.| .+.+|++++.|+.|++|++-.. .++++++.+|..+|..++|+++|..+++++.|+
T Consensus 205 k~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred hheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 4455566 9999999999999 8889999999999999998763 378999999999999999999999999999999
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
.+++||++++++...+..
T Consensus 281 ~lKlwDtETG~~~~~f~~-------------------------------------------------------------- 298 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL-------------------------------------------------------------- 298 (503)
T ss_pred eeeeeccccceEEEEEec--------------------------------------------------------------
Confidence 999999999987766543
Q ss_pred ecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC
Q 004270 417 LRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 495 (764)
...++++.+.|++ +.+++|+.|+.|..||+++++.+..+. .|-+.|..+.|-++|+++++++.|
T Consensus 299 -------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 299 -------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------RHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred -------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------hhhhheeeeEEccCCceEeeeccC
Confidence 1678899999999 899999999999999999999999886 899999999999999999999999
Q ss_pred CeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCC---eEEEEeecCC--CCeeEEEEcCC
Q 004270 496 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHT--DRITDFCFSED 568 (764)
Q Consensus 496 g~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~---~~~~~~~~h~--~~i~~l~~s~d 568 (764)
+.++||+....-.+..+... ....++..+|+++++++-+.|+.|.+|.+... ...+.|+||. +--..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999999988776655433 56778999999999999999999999986543 2345688886 34567899999
Q ss_pred CcEEEEEeCCCcEEEEEcCccceEEEEeeC-CceEEEEEcCC-CCeEEEEEeCCCeEEEEe
Q 004270 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPN-MDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 569 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~-g~~lat~~~d~~~i~lW~ 627 (764)
|++|++|+.||.+.+||..+-+++..++.| .++..+.|+|. -..+|+++.||. |++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~-Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL-IKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce-eEecC
Confidence 999999999999999999999999999988 56999999994 568999999995 99996
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.7e-33 Score=280.13 Aligned_cols=286 Identities=29% Similarity=0.480 Sum_probs=249.5
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~ 254 (764)
.++++|.++|.+++|+|++++|++++.+|.|++|++.+++....+..+ ...+..+.|+++++ .+++++.+|.|++||+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGT-YLASGSSDKTIRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCC-EEEEEcCCCeEEEEEc
Confidence 457789999999999999999999999999999999988877777655 67889999999997 8999999999999999
Q ss_pred CCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC
Q 004270 255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334 (764)
Q Consensus 255 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~ 334 (764)
.+++....+. .|...+.++.|++++.++++++.|+.+++|++... +....+..|...+.+++|+|++.++++++.
T Consensus 81 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 81 ETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred CcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence 9988888887 88889999999999888988888999999998744 455566678888999999998888888777
Q ss_pred CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecc
Q 004270 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (764)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 414 (764)
|+.+++||+...+.
T Consensus 156 ~~~i~i~d~~~~~~------------------------------------------------------------------ 169 (289)
T cd00200 156 DGTIKLWDLRTGKC------------------------------------------------------------------ 169 (289)
T ss_pred CCcEEEEEcccccc------------------------------------------------------------------
Confidence 88888888643211
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC
Q 004270 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (764)
Q Consensus 415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 494 (764)
...+ ..|...+.++.|+|+++.+++++.
T Consensus 170 --------------------------------------------~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 170 --------------------------------------------VATL--------TGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred --------------------------------------------ceeE--------ecCccccceEEECCCcCEEEEecC
Confidence 1111 156678899999999989999999
Q ss_pred CCeEEEEECCCCCeeeeE-ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270 495 HGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 573 (764)
Q Consensus 495 dg~v~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~ 573 (764)
|+.|++||+.+++.+..+ .+...+.++.|++++.++++++.++.|++||+.+++....+.+|...|.+++|+|++++|+
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 999999999998888888 4457999999999988888888899999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEE
Q 004270 574 SSGMDGSLRIWD 585 (764)
Q Consensus 574 s~s~dg~i~iwd 585 (764)
+++.|+.|++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
No 52
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-30 Score=258.76 Aligned_cols=499 Identities=16% Similarity=0.240 Sum_probs=358.6
Q ss_pred cccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecC-CccccEEEEeCCCCCCEEEEEeCCCcEEEEeC
Q 004270 92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI 168 (764)
Q Consensus 92 h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~ 168 (764)
--.+|.++++ ..+.||.+-.+|.|.+|++...-.. ...+.++ +..+..++|++.+ .|++.+.+|.|.-||+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~---~~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL---EPVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDL 97 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCcee---eEEEecCCCCceeeEEEccCC---eEEeecCCceEEEEec
Confidence 3467899998 4678999999999999999885441 2334444 3556677788554 7999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270 169 STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSG 247 (764)
Q Consensus 169 ~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg 247 (764)
.++++.+.+....+.|++++.+|.++.+++|+.||.+..++...++....... ..++.|.+++|.|++. .+++|+.||
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg 176 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDG 176 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCc
Confidence 99999999999999999999999999999999999888888877776554432 2258999999999998 799999999
Q ss_pred cEEEEECCCceeeeeee-------cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270 248 VISIWNLEKRRLQSVIR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (764)
.|++||..++..+.... .....-|+++.|..++ .+++|..-|+|++||.... .++.....|.+.|.++
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLAL 251 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc----chhhhhhhhhcceeEE
Confidence 99999999997766222 1123458889998666 7999999999999987766 6778888999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
+..+++.+++++|.|+.+..|...+....... ......+...+.+++..+ +.+..+..+.
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~-------------~~~r~~h~hdvrs~av~~-------~~l~sgG~d~ 311 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI-------------NSRRDLHAHDVRSMAVIE-------NALISGGRDF 311 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceee-------------eccccCCcccceeeeeec-------ceEEecceee
Confidence 99999999999999999999887765431110 011111112222222221 2344444444
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccc-cccccccCcEEE
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-RSNYAHNGEVVG 479 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~ 479 (764)
.+.+-.........+... .. .+-.+.....-.++++.--....+.+|.+.+......+..... .........|.+
T Consensus 312 ~l~i~~s~~~~~~~h~~~-~~---~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~ 387 (691)
T KOG2048|consen 312 TLAICSSREFKNMDHRQK-NL---FPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC 387 (691)
T ss_pred EEEEccccccCchhhhcc-cc---ccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee
Confidence 454444443333333311 11 1222223333346666666677788888877643322211000 001133457899
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC------cceEEEEEeecCCEEEEEe-CCCeEEEEEccCCeE--E
Q 004270 480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRM--V 550 (764)
Q Consensus 480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~--~ 550 (764)
.+.+|+|++++.+.- ..+++|.++....+...... -....+.|+-|++.++..+ ....+.++++++... +
T Consensus 388 ~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel 466 (691)
T KOG2048|consen 388 AAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL 466 (691)
T ss_pred eccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence 999999999887764 56788888754333333222 4677888999999888887 778888888876532 2
Q ss_pred EEee--cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE-eeCCceEEEEEcC-CCCeEEEEEeCCCeEEEE
Q 004270 551 RKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSP-NMDVLATAHVDQNGVYLW 626 (764)
Q Consensus 551 ~~~~--~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~sp-~g~~lat~~~d~~~i~lW 626 (764)
..+. +-...|..+..||||+|||+.+.+|.|.+|++++++.-... +....++.++|+| +...|+.++++++ ++=+
T Consensus 467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQ-v~ef 545 (691)
T KOG2048|consen 467 KSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQ-VFEF 545 (691)
T ss_pred hccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCe-EEEE
Confidence 2222 34567999999999999999999999999999987765444 4557799999995 6778889998985 9888
Q ss_pred ec
Q 004270 627 VN 628 (764)
Q Consensus 627 ~~ 628 (764)
++
T Consensus 546 di 547 (691)
T KOG2048|consen 546 DI 547 (691)
T ss_pred ec
Confidence 88
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=251.09 Aligned_cols=290 Identities=19% Similarity=0.331 Sum_probs=258.5
Q ss_pred EEEcCCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 175 YEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp---~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
.+-.+|..+|..++||| +|-+|++++.||.-.+-+-++|.-+.+|.+| ++.|.+.....+.. ..|+++.|-+-++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh-kgavw~~~l~~na~-~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH-KGAVWSATLNKNAT-RAASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc-CcceeeeecCchhh-hhhhhcccchhhh
Confidence 34579999999999985 7889999999999999999999999999886 89999999998877 7889999999999
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (764)
||.-+|..+..+. |..-|.+++|+.|.++|++|+.+.-+|++|++..+.. .....+|.+.|..+.|....+.|++
T Consensus 86 w~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 86 WDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCceEEe
Confidence 9999999999987 8889999999999999999999999999999877654 3445799999999999998899999
Q ss_pred EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (764)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (764)
++.|++||+||.+++.....+
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL----------------------------------------------------------- 181 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSL----------------------------------------------------------- 181 (334)
T ss_pred eccCCceEEEEeccCcEEEEE-----------------------------------------------------------
Confidence 999999999998776543332
Q ss_pred ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
.....|+++.++++|++|.+
T Consensus 182 ------------------------------------------------------------~~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 182 ------------------------------------------------------------EFNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred ------------------------------------------------------------ecCCCCcceeeccCCCEEEE
Confidence 23456788888888886554
Q ss_pred EeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEe-ecCCCCeeEEEEcCCCc
Q 004270 492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGK 570 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~s~dg~ 570 (764)
+ ..+.|++||.++..++..++.+..|.+..++|+...+++|++|+.++.||..+++.+..+ ++|.++|.++.|+|||.
T Consensus 202 a-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 202 A-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred e-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 4 457899999999999999999999999999999999999999999999999999999886 89999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCccce
Q 004270 571 WLLSSGMDGSLRIWDVILARQ 591 (764)
Q Consensus 571 ~l~s~s~dg~i~iwd~~~~~~ 591 (764)
..++||+||+||+|....++.
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eeeccCCCceEEEEEecCCCc
Confidence 999999999999999876543
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=275.58 Aligned_cols=290 Identities=18% Similarity=0.290 Sum_probs=244.6
Q ss_pred CeEEEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270 171 KKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~ 248 (764)
.+.++.+.+|...|+++.|.| .+.+|++++.|+.|+|||+.. +++++++.+| ..+|.+++|+++|. .+.+++.|+.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~-~fLS~sfD~~ 281 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGT-SFLSASFDRF 281 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCC-eeeeeeccee
Confidence 356788999999999999999 899999999999999999987 7788888765 89999999999999 7889999999
Q ss_pred EEEEECCCceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (764)
|++||+++|+++..+. ....++++.|.|++ +.+++|+.|+.|+.||++.+ .+++....|-+.|..+.|.++|+
T Consensus 282 lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhheeeeEEccCCc
Confidence 9999999999999987 55678999999998 79999999999999999887 57778888999999999999999
Q ss_pred EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (764)
Q Consensus 328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (764)
++++++.|+++++|+...+.....+.
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~------------------------------------------------------ 381 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIA------------------------------------------------------ 381 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhc------------------------------------------------------
Confidence 99999999999999976543222111
Q ss_pred cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (764)
..+.....++..+|++.
T Consensus 382 ---------------------------------------------------------------~~~~hsmP~~~~~P~~~ 398 (503)
T KOG0282|consen 382 ---------------------------------------------------------------DPEMHTMPCLTLHPNGK 398 (503)
T ss_pred ---------------------------------------------------------------chhhccCcceecCCCCC
Confidence 02222345666677777
Q ss_pred EEEEEeCCCeEEEEECCCC---CeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee
Q 004270 488 LMISAGYHGDIKVWDFKGR---DLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 561 (764)
Q Consensus 488 ~l~s~~~dg~v~iwd~~~~---~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~ 561 (764)
+++.-+.|..+.++.+... .....++.+ +.-..+.|||||++|++|+.||.+.+||.++-+++..+++|.+++.
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 7777777777777765432 122233333 5567899999999999999999999999999999999999999999
Q ss_pred EEEEcCCC-cEEEEEeCCCcEEEEE
Q 004270 562 DFCFSEDG-KWLLSSGMDGSLRIWD 585 (764)
Q Consensus 562 ~l~~s~dg-~~l~s~s~dg~i~iwd 585 (764)
.+.|+|.. ..+||++.||.|++||
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 99999954 5799999999999996
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-33 Score=238.29 Aligned_cols=284 Identities=20% Similarity=0.379 Sum_probs=243.6
Q ss_pred EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (764)
..+..+ +++|.++.|+-||+ +.++++.|.+|++|+...+.++++.. +|...|..++.+.|+..+++++.|+.+.+||
T Consensus 11 ~~l~~~-qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 11 SILDCA-QGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eeeccc-ccceEEEEEccCCC-EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEE
Confidence 334444 88999999999999 88889999999999999999999999 9999999999999999999999999999999
Q ss_pred ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (764)
++++ +..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.+......
T Consensus 88 V~TG----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-------------------------- 137 (307)
T KOG0316|consen 88 VNTG----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-------------------------- 137 (307)
T ss_pred cccC----eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc--------------------------
Confidence 9988 7889999999999999999999999999999999999986532110
Q ss_pred eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC
Q 004270 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (764)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~ 456 (764)
T Consensus 138 -------------------------------------------------------------------------------- 137 (307)
T KOG0316|consen 138 -------------------------------------------------------------------------------- 137 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC
Q 004270 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536 (764)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d 536 (764)
++.+ ......|.++.+. +..+++|+.||++|.||++.|++...+ ...+|++++|++|++...+++-|
T Consensus 138 --iQil--------dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 138 --IQIL--------DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred --cchh--------hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeecc
Confidence 0011 1344566777665 457899999999999999988765433 34799999999999999999999
Q ss_pred CeEEEEEccCCeEEEEeecCCCCe--eEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc--eEEEEEcCCCCe
Q 004270 537 LVIRLFDVVALRMVRKFEGHTDRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDV 612 (764)
Q Consensus 537 ~~i~v~d~~~~~~~~~~~~h~~~i--~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--v~~l~~sp~g~~ 612 (764)
+++++.|-.+|+++..++||.+.- .+.+++.....+++|++||.|++||+.++.++..+..++. +++++++|....
T Consensus 205 stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 999999999999999999998654 4557787888999999999999999999999999988775 799999999888
Q ss_pred EEEEEeCCCeEEEEec
Q 004270 613 LATAHVDQNGVYLWVN 628 (764)
Q Consensus 613 lat~~~d~~~i~lW~~ 628 (764)
|.++...+ +.+|.-
T Consensus 285 f~~A~~~~--~~~~~~ 298 (307)
T KOG0316|consen 285 FITATGHG--DLFWYQ 298 (307)
T ss_pred eeEecCCc--eeceee
Confidence 88887554 778863
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.1e-32 Score=273.17 Aligned_cols=285 Identities=23% Similarity=0.411 Sum_probs=251.1
Q ss_pred eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (764)
Q Consensus 261 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i 340 (764)
..+. +|.++|.+++|+|+++++++++.||.+++|+++.. ........|...+..+.|+++++.+++++.|+.+++
T Consensus 3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3455 79999999999999999999999999999998765 345566789999999999999999999999999999
Q ss_pred EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (764)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (764)
|++........+
T Consensus 78 ~~~~~~~~~~~~-------------------------------------------------------------------- 89 (289)
T cd00200 78 WDLETGECVRTL-------------------------------------------------------------------- 89 (289)
T ss_pred EEcCcccceEEE--------------------------------------------------------------------
Confidence 998754322211
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (764)
Q Consensus 421 ~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 500 (764)
..+...+.++.++++++++++++.+|.+.+|++.++.....+. .|...+.+++++|++.++++++.|+.|++
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 1234689999999999999999889999999999877776664 78889999999999999888888999999
Q ss_pred EECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270 501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg 579 (764)
||+.+++....+..+ ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..|...+.+++|+|++.++++++.|+
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 999988888888766 5899999999999999999999999999999999999988999999999999999999888899
Q ss_pred cEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 580 SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 580 ~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
.|++||+.+++.+..+..+. .+.+++|+|++.+|++++.|+ .+++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG-TIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC-eEEecC
Confidence 99999999999888887654 599999999999999999999 599996
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=288.68 Aligned_cols=290 Identities=22% Similarity=0.396 Sum_probs=254.0
Q ss_pred EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (764)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v 294 (764)
..+..++...|.++.|+++|+ .+++++.++.+++|+....+ ....+. +|...|.+++|+|++.++++++.|++|++
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEE
Confidence 344444467899999999999 79999999999999997777 666665 89999999999999999999999999999
Q ss_pred EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
||+... ...++.+.+|...|++++|+|+++.+++|+.|++|++||+.+++....+.
T Consensus 230 wd~~~~---~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------------------- 285 (456)
T KOG0266|consen 230 WDLKDD---GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------------------- 285 (456)
T ss_pred eeccCC---CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------
Confidence 998222 26788889999999999999999999999999999999998765544432
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~ 454 (764)
.|...+++++|+++|+++++++.||.|++||+.
T Consensus 286 -----------------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 286 -----------------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred -----------------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 566899999999999999999999999999999
Q ss_pred CCcc--cceecCccccccccccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-c---ceEEEEEeec
Q 004270 455 SGIS--RGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-C---SLVKIVYHRV 526 (764)
Q Consensus 455 ~~~~--~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~---~i~~~~~s~~ 526 (764)
++.. ...+. .+.. .++.+.|+|+++++++++.|+.+++||+..+.....+..+ . .+.+...++.
T Consensus 319 ~~~~~~~~~~~--------~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 319 TGSKLCLKLLS--------GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred CCceeeeeccc--------CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 9994 34443 3433 5999999999999999999999999999999988888766 2 4455566889
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCeeEEEEcCCCcEEEEEe--CCCcEEEEEcC
Q 004270 527 NGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI 587 (764)
Q Consensus 527 ~~~la~~~~d~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~s~dg~~l~s~s--~dg~i~iwd~~ 587 (764)
+.++++|+.|+.|++||..++..+..+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999999999999999999999 89999999999999999998 78999999754
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=262.06 Aligned_cols=270 Identities=21% Similarity=0.396 Sum_probs=230.1
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
...|+|+.+..+ .+++|..|++|+|||.++..++..+. +|++.|.|+.| +.+.+++|+.|.+|++||++++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg--- 267 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG--- 267 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeec--cceEEEecCCCceEEEEeccCC---
Confidence 457999999633 69999999999999999999999998 99999999999 4569999999999999999987
Q ss_pred ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (764)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (764)
+++..+-+|...|..+.|+ ..++++++.|.++++||+........
T Consensus 268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~-------------------------------- 312 (499)
T KOG0281|consen 268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL-------------------------------- 312 (499)
T ss_pred -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH--------------------------------
Confidence 6788888999999999997 44899999999999999865431100
Q ss_pred cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec
Q 004270 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463 (764)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~ 463 (764)
...
T Consensus 313 ---------------------------------------------------------------------------rrV-- 315 (499)
T KOG0281|consen 313 ---------------------------------------------------------------------------RRV-- 315 (499)
T ss_pred ---------------------------------------------------------------------------HHH--
Confidence 011
Q ss_pred CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLF 542 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~ 542 (764)
+.+|...|+.+.|+ .+++++++.|.+|++|++.+++.++++..+ ..|.|+.+. ++++++|+.|.+|++|
T Consensus 316 ------LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 316 ------LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW 385 (499)
T ss_pred ------Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEE
Confidence 13899999999986 459999999999999999999999999877 788888775 8999999999999999
Q ss_pred EccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE---------EEE-eeCCceEEEEEcCCCCe
Q 004270 543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI---------DAI-HVDVSITALSLSPNMDV 612 (764)
Q Consensus 543 d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~---------~~~-~~~~~v~~l~~sp~g~~ 612 (764)
|+..|.+++.++||..-|.++.| |.+.+++|+.||+|+|||+..+..- ..+ ++.+.|..+.| |...
T Consensus 386 di~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fq 461 (499)
T KOG0281|consen 386 DIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQ 461 (499)
T ss_pred eccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceE
Confidence 99999999999999999999999 5678999999999999999876432 222 33446999999 6667
Q ss_pred EEEEEeCCCeEEEEecc
Q 004270 613 LATAHVDQNGVYLWVNR 629 (764)
Q Consensus 613 lat~~~d~~~i~lW~~~ 629 (764)
+++++.|. +|-+|++.
T Consensus 462 IvsssHdd-tILiWdFl 477 (499)
T KOG0281|consen 462 IISSSHDD-TILIWDFL 477 (499)
T ss_pred EEeccCCC-eEEEEEcC
Confidence 77777777 69999975
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.9e-32 Score=252.91 Aligned_cols=306 Identities=21% Similarity=0.355 Sum_probs=245.3
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC---EEEEEcCCCcEEEEEecCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~l~s~~~d~~i~vw~~~~~ 300 (764)
...|.++.-. ++ .+++|+.||.+++||. .|+...++. +|.++|.+++|.-... .+++++.|.++++|.++.+
T Consensus 105 dDWVSsv~~~--~~-~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 105 DDWVSSVKGA--SK-WILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred hhhhhhhccc--Cc-eEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 5788888877 44 8999999999999996 677888888 9999999998865443 5999999999999999888
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
......+....||...|.+++..++|..+++|+.|.++.+|+..... ..++......++.+...
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~--------------- 243 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKR--------------- 243 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccchhhhhhhhh---------------
Confidence 76666666667999999999999999999999999999999933221 11111100000000000
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
... ...+.++.
T Consensus 244 -------------------------------------~~~--------------------------------~~~r~P~v 254 (423)
T KOG0313|consen 244 -------------------------------------EKE--------------------------------GGTRTPLV 254 (423)
T ss_pred -------------------------------------hhc--------------------------------ccccCceE
Confidence 000 00011111
Q ss_pred eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~ 540 (764)
.+ .+|..+|.++.|++ ...+++++.|.+|+.||+.++....++.....+.++.++|..++||+|+.|..++
T Consensus 255 tl--------~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TL--------EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred Ee--------cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence 12 49999999999998 6789999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC---eEEEEeecCCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCccc-eEEEEeeCCc-eEEEEEcCCCCeEE
Q 004270 541 LFDVVAL---RMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILAR-QIDAIHVDVS-ITALSLSPNMDVLA 614 (764)
Q Consensus 541 v~d~~~~---~~~~~~~~h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~-v~~l~~sp~g~~la 614 (764)
+||.+++ -....|.||.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+..|.. |.++.|+ ++.+++
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~Iv 404 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIV 404 (423)
T ss_pred ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEE
Confidence 9998876 34667999999999999999665 57799999999999999877 7877776665 9999996 577999
Q ss_pred EEEeCCCeEEEEeccc
Q 004270 615 TAHVDQNGVYLWVNRC 630 (764)
Q Consensus 615 t~~~d~~~i~lW~~~~ 630 (764)
+|+.|. .|+++.-..
T Consensus 405 SGGaD~-~l~i~~~~~ 419 (423)
T KOG0313|consen 405 SGGADN-KLRIFKGSP 419 (423)
T ss_pred eccCcc-eEEEecccc
Confidence 999999 599987543
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-32 Score=235.21 Aligned_cols=285 Identities=13% Similarity=0.187 Sum_probs=245.4
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw 252 (764)
..+.+.++.++|.++.|+-+|+|.++++.|.+|++||...|..++++..| ...|..++.+.|+. -+++|+.|..+.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dns-kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNS-KFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-Cceeeecccccccc-ccccCCCCceEEEE
Confidence 45678899999999999999999999999999999999999999999876 78899999999988 89999999999999
Q ss_pred ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (764)
Q Consensus 253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (764)
|+++|+....+. +|.+.|+.+.|+.+...+++|+.|.++++||.+.... .+++.+......|.++... +..|++|
T Consensus 87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 87 DVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999 9999999999999999999999999999998876644 5666667777788887774 5578888
Q ss_pred eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee
Q 004270 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (764)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 412 (764)
+.||++|.||++.++....
T Consensus 162 S~DGtvRtydiR~G~l~sD------------------------------------------------------------- 180 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSD------------------------------------------------------------- 180 (307)
T ss_pred ccCCcEEEEEeecceeehh-------------------------------------------------------------
Confidence 8888888888765432111
Q ss_pred cceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE
Q 004270 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492 (764)
Q Consensus 413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 492 (764)
-...+|+++.|+++++..+.+
T Consensus 181 -----------------------------------------------------------y~g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 181 -----------------------------------------------------------YFGHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred -----------------------------------------------------------hcCCcceeEEecCCCCEEEEe
Confidence 234578999999999999999
Q ss_pred eCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC-eeEEEEcCC
Q 004270 493 GYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSED 568 (764)
Q Consensus 493 ~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~-i~~l~~s~d 568 (764)
+.|+++++.|-.+|+++..++.+ ..-...+++.....+++|++||.|++||+.....+..+..|... |++++++|.
T Consensus 202 ~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 202 SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred eccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 99999999999999999988877 33456677777889999999999999999999999999988887 899999998
Q ss_pred CcEEEEEeCCCcEEEEE
Q 004270 569 GKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 569 g~~l~s~s~dg~i~iwd 585 (764)
-.-++++. ++.+..|-
T Consensus 282 ~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 282 MDDFITAT-GHGDLFWY 297 (307)
T ss_pred ccceeEec-CCceecee
Confidence 77777775 45566665
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.7e-34 Score=260.49 Aligned_cols=287 Identities=22% Similarity=0.363 Sum_probs=225.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (764)
Q Consensus 180 h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~ 259 (764)
....|.|+.+.. ..+++|..|++|+|||..+-.+++.+.+| .+.|.|+.|. .+ ++++|+.|.+|++||.+++++
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqyd--~r-viisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQYD--ER-VIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeecc--ce-EEEecCCCceEEEEeccCCch
Confidence 356788888764 46999999999999999988888888776 8999999995 44 999999999999999999999
Q ss_pred eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE
Q 004270 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~ 339 (764)
+.++. +|...|..+.|+. .++++++.|.++.+||+.... ...+.+.+.||...|+.+.|+ .+++++++.|++|+
T Consensus 270 l~tli-hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 270 LNTLI-HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred hhHHh-hhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 99998 8999999999974 489999999999999998775 345567778999999999995 56999999999999
Q ss_pred EEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC
Q 004270 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (764)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 419 (764)
+|++.+....+.+.
T Consensus 344 vW~~st~efvRtl~------------------------------------------------------------------ 357 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLN------------------------------------------------------------------ 357 (499)
T ss_pred EEeccceeeehhhh------------------------------------------------------------------
Confidence 99998776655542
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (764)
Q Consensus 420 ~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 499 (764)
+|...|.|+.+ .|+++++|++|.+|++||+..|..+..+. +|..-|.++.| +.+.+++|+.||+|+
T Consensus 358 --gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe--------GHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 358 --GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--------GHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred --cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh--------chHHhhhheee--cCceeeeccccceEE
Confidence 23344444433 46677777777777777777777776664 77777777777 377777777777777
Q ss_pred EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg 579 (764)
+||+..+..-+. +. ..-++..+..|+++|..+.| |...+++++.|.
T Consensus 424 vWdl~aaldpra-----~~---------------------------~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 424 VWDLQAALDPRA-----PA---------------------------STLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred EEecccccCCcc-----cc---------------------------cchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 777665432111 00 01134556679999999999 567899999999
Q ss_pred cEEEEEcCccceE
Q 004270 580 SLRIWDVILARQI 592 (764)
Q Consensus 580 ~i~iwd~~~~~~~ 592 (764)
+|-|||..++..-
T Consensus 470 tILiWdFl~~~~~ 482 (499)
T KOG0281|consen 470 TILIWDFLNGPPS 482 (499)
T ss_pred eEEEEEcCCCCcc
Confidence 9999999877544
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-31 Score=302.95 Aligned_cols=301 Identities=15% Similarity=0.271 Sum_probs=239.2
Q ss_pred CCcEEEEeCCCCeEEEEE-----cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC----c----eEEEEeccCCCC
Q 004270 160 EGSLQLWNISTKKKLYEF-----KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD----E----ELVTFTHSMRGA 226 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~-----~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~----~----~~~~~~~~~~~~ 226 (764)
+|.+++|+..+.+....+ ..|...|.+++|+|+++++|+|+.|+.|+||++... . ....+.. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSK 534 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCc
Confidence 677888988776655443 358999999999999999999999999999997532 1 1222222 467
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCce
Q 004270 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPR 305 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~ 305 (764)
+.+++|++....+|++++.||.|++||+.+++.+..+. +|.+.|++++|+| ++.+|++|+.|++|++||+... .
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~ 609 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----V 609 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----c
Confidence 99999998644489999999999999999999888887 8999999999997 7889999999999999998765 3
Q ss_pred eeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270 306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (764)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (764)
.+..+.. ...+.++.|.+ ++.+|++|+.|+.|++||++....
T Consensus 610 ~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~------------------------------------ 652 (793)
T PLN00181 610 SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL------------------------------------ 652 (793)
T ss_pred EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc------------------------------------
Confidence 4444443 35788888854 788899999999999988753210
Q ss_pred ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC
Q 004270 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (764)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~ 464 (764)
....+
T Consensus 653 -------------------------------------------------------------------------~~~~~-- 657 (793)
T PLN00181 653 -------------------------------------------------------------------------PLCTM-- 657 (793)
T ss_pred -------------------------------------------------------------------------cceEe--
Confidence 00011
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC------CeeeeEecC-cceEEEEEeecCCEEEEEeCCC
Q 004270 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG-CSLVKIVYHRVNGLLATVADDL 537 (764)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~ 537 (764)
.+|...|.++.|. ++.++++++.|++|++||+..+ ..+..+..+ ..+..++|++++.+||+|+.|+
T Consensus 658 ------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 658 ------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred ------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 2788888999986 6778999999999999998743 455666554 6788999999999999999999
Q ss_pred eEEEEEccCCeEEEEe-------------ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 538 VIRLFDVVALRMVRKF-------------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 538 ~i~v~d~~~~~~~~~~-------------~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
.|++|+......+..+ ..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 731 ~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 731 EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999998765443222 234567999999999999999999999999996
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.3e-32 Score=284.46 Aligned_cols=288 Identities=24% Similarity=0.409 Sum_probs=248.8
Q ss_pred CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc-cCC
Q 004270 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV-RYD 213 (764)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~-~~~ 213 (764)
...+..+.|+|++ +.+++++.++.+++|+..+.+ ..+.+.+|...|..++|+|+++++++++.|++|+|||+ ..+
T Consensus 159 ~~sv~~~~fs~~g--~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 159 CPSVTCVDFSPDG--RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred cCceEEEEEcCCC--CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 3455567899999 789999999999999998888 78888999999999999999999999999999999999 455
Q ss_pred ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~ 293 (764)
..++++..| ...|++++|+|+|+ ++++|+.|++|+|||++++++...+. +|.+.|++++|++++.+|++++.|+.|+
T Consensus 237 ~~~~~l~gH-~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 237 RNLKTLKGH-STYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred eEEEEecCC-CCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 788888754 88999999999996 99999999999999999999999999 9999999999999999999999999999
Q ss_pred EEEecCCCCCceeeEeccCCCCC--CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhh
Q 004270 294 MWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371 (764)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (764)
+||+...... +...+.++..+ ++++.|+|++.++++++.|+.+++|++..............
T Consensus 314 vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~-------------- 377 (456)
T KOG0266|consen 314 VWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN-------------- 377 (456)
T ss_pred EEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC--------------
Confidence 9998876321 34555566555 99999999999999999999999999987765544322100
Q ss_pred ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 004270 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451 (764)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~ 451 (764)
. ...+.+...++.|.++++|+.|+.|++|
T Consensus 378 --------------------------------------------------~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 378 --------------------------------------------------L-VRCIFSPTLSTGGKLIYSGSEDGSVYVW 406 (456)
T ss_pred --------------------------------------------------c-ceeEecccccCCCCeEEEEeCCceEEEE
Confidence 0 0234455568899999999999999999
Q ss_pred ECcCCcccceecCccccccccc-cCcEEEEEECCCCCEEEEEe--CCCeEEEEECC
Q 004270 452 NLQSGISRGSYLDMSERSNYAH-NGEVVGVACDSTNTLMISAG--YHGDIKVWDFK 504 (764)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~ 504 (764)
++.++..+..+. +| ...+..+.+++...++++++ .|+.+++|...
T Consensus 407 ~~~s~~~~~~l~--------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 407 DSSSGGILQRLE--------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eCCccchhhhhc--------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999988888875 88 88999999999999999998 78999999754
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=235.12 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=245.9
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEee
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~ 344 (764)
+|...|.+++|+.+|..|++++.|+++++|+++... ...-....+|.+.|-.++|+| ....+++++.|.++++||++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 789999999999999999999999999999988662 122334568999999999998 66789999999999999999
Q ss_pred cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (764)
..++...... .
T Consensus 96 ~~k~~~~i~~---------------------------------------------------------------------~ 106 (313)
T KOG1407|consen 96 SGKCTARIET---------------------------------------------------------------------K 106 (313)
T ss_pred cCcEEEEeec---------------------------------------------------------------------c
Confidence 8876655422 1
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..-.-++++|+|+++++|..|..|...|..+.+..... .....+..++|+.++.+++....-|+|.|..+.
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---------cccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 34456789999999999999999999999988777665 455678889999888888887778999999999
Q ss_pred CCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEE
Q 004270 505 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (764)
Q Consensus 505 ~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i 583 (764)
.-+++..++.| ....|+.|+|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++||+||+|..|-|
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence 99999998766 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCC
Q 004270 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (764)
Q Consensus 584 wd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~ 621 (764)
=++++|..+..++..++...++|+|...+||.++.|..
T Consensus 258 A~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 258 AEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred EecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 99999999999999999999999999999999998764
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.4e-31 Score=297.93 Aligned_cols=303 Identities=12% Similarity=0.174 Sum_probs=244.0
Q ss_pred CCcEEEEECCCceeeeeeec----ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC----ceeeEeccCCCCCC
Q 004270 246 SGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP 317 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~----~~~~~~~~~h~~~v 317 (764)
+|.+++|+..+.+....+.. .|.+.|.+++|+|++.++++|+.|+.|++|++...... ....... .+...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 67788888877655444332 48999999999999999999999999999987542111 0112222 235678
Q ss_pred eeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270 318 LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 318 ~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
.+++|++ ++.+|++++.||+|++||+.+++....+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-------------------------------------------- 571 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-------------------------------------------- 571 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe--------------------------------------------
Confidence 9999988 5789999999999999998754332221
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccC
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (764)
.+|...|.+++|+| ++++|++|+.||.|++||+.++.....+. +..
T Consensus 572 ------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---------~~~ 618 (793)
T PLN00181 572 ------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---------TKA 618 (793)
T ss_pred ------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------cCC
Confidence 24668899999996 78999999999999999999887776653 346
Q ss_pred cEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCC-eeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccC------
Q 004270 476 EVVGVACD-STNTLMISAGYHGDIKVWDFKGRD-LKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA------ 546 (764)
Q Consensus 476 ~v~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~------ 546 (764)
.+.++.|+ +++.++++|+.||.|++||+.+.+ .+..+..+ ..|.++.|. ++.++++++.|++|++||+..
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence 78999995 578999999999999999998765 34444444 789999997 788999999999999999974
Q ss_pred CeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee--------------CCceEEEEEcCCCCe
Q 004270 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV--------------DVSITALSLSPNMDV 612 (764)
Q Consensus 547 ~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------~~~v~~l~~sp~g~~ 612 (764)
.+.+..+.+|...+..++|+|++++|++|+.|+.|++|+...+..+..+.. ...|.+++|+|++.+
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 367889999999999999999999999999999999999876654433221 123999999999999
Q ss_pred EEEEEeCCCeEEEEec
Q 004270 613 LATAHVDQNGVYLWVN 628 (764)
Q Consensus 613 lat~~~d~~~i~lW~~ 628 (764)
|++++.|+ .|++|++
T Consensus 778 lva~~~dG-~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTG-NIKILEM 792 (793)
T ss_pred EEEecCCC-cEEEEec
Confidence 99999999 5999985
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=252.14 Aligned_cols=291 Identities=22% Similarity=0.338 Sum_probs=249.5
Q ss_pred eeeEecCCcc-ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEcCCCCEEEEEE
Q 004270 130 VGHVKLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--------GWGSSISSCVSSPALDVVAVGC 200 (764)
Q Consensus 130 ~~~~~~~~~~-~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~h~~~i~~~~~sp~~~~la~g~ 200 (764)
.+++++.... +.+..|+|++ +++++|+.||.|.+||..+|+....++ -+..+|.|+.||.|...||+|+
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDg--qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDG--QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred hhheecccccchhheeeCCCC--ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence 4556665543 4445599999 899999999999999999998765543 4689999999999999999999
Q ss_pred cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC
Q 004270 201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE 280 (764)
Q Consensus 201 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~ 280 (764)
.||.|++|.+.+|.+++.|...|...|+|+.|+.|+. .+.+++.|.++++.-+++|++++.++ +|.+.|+...|.++|
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG 360 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC
Confidence 9999999999999999999988899999999999999 78899999999999999999999999 999999999999999
Q ss_pred CEEEEEcCCCcEEEEEecCCCCCceeeEec--cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270 281 PVLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (764)
Q Consensus 281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (764)
..+++++.||+|++|+..+.+ ++.++ .+...+|+++-..| +..+++.+...+++.+.++.. +..+.++.+.
T Consensus 361 ~~iisaSsDgtvkvW~~Ktte----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGk- 434 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTE----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGK- 434 (508)
T ss_pred CeEEEecCCccEEEecCcchh----hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCC-
Confidence 999999999999999876653 33332 35667889998888 667899999999999988642 2222222211
Q ss_pred hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (764)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (764)
...+...+.++||.|.
T Consensus 435 ----------------------------------------------------------------REgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 435 ----------------------------------------------------------------REGGDFINAILSPKGE 450 (508)
T ss_pred ----------------------------------------------------------------ccCCceEEEEecCCCc
Confidence 1236677889999999
Q ss_pred EEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
++.+.+.|+.++.|+..+|.....+. -|...+.+++-+|..+.+++-+.||.+++|.
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl~--------VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTLP--------VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeeee--------cccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999988886 8999999999999999999999999999994
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-32 Score=236.82 Aligned_cols=292 Identities=13% Similarity=0.184 Sum_probs=236.6
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (764)
Q Consensus 176 ~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~ 255 (764)
.++||..+++.+.++.+|++|.+++.|....+|-..+|+.+.++.+| .+.|.|+....+.+ .+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH-tGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH-TGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC-CceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 36789999999999999999999999999999999999999999886 89999999999998 89999999999999999
Q ss_pred CceeeeeeecccccCeeEEEEecCCCEEEEEcC-----CCcEEEEEecCCCC---CceeeEeccCCCCCCeeEEEecCCC
Q 004270 256 KRRLQSVIREAHDNAIISLHFFANEPVLMSASA-----DNSIKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANGR 327 (764)
Q Consensus 256 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----d~~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (764)
+|+.+..+. -..+|..+.|+++|++++.... .+.|.++++..... ...+...+..+...++.+-|.|-++
T Consensus 83 tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999997 6789999999999998776653 35688887764321 1122333344556666666666666
Q ss_pred EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (764)
Q Consensus 328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (764)
+|++|..||.|..||++++.
T Consensus 161 ~ii~Ghe~G~is~~da~~g~------------------------------------------------------------ 180 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGK------------------------------------------------------------ 180 (327)
T ss_pred EEEEecCCCcEEEEEcccCc------------------------------------------------------------
Confidence 66666666666666655432
Q ss_pred cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (764)
....-. ..|...|+.+.++++..
T Consensus 181 --------------------------------------------------~~v~s~-------~~h~~~Ind~q~s~d~T 203 (327)
T KOG0643|consen 181 --------------------------------------------------ELVDSD-------EEHSSKINDLQFSRDRT 203 (327)
T ss_pred --------------------------------------------------eeeech-------hhhccccccccccCCcc
Confidence 221111 37888999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCe--------------EEEEEccCCeEEEEe
Q 004270 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV--------------IRLFDVVALRMVRKF 553 (764)
Q Consensus 488 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~--------------i~v~d~~~~~~~~~~ 553 (764)
++++++.|.+-++||..+.+.++++....|+++.+++|-...++.|+.... -++|++-..+.+..+
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999998888877754321 223333333456778
Q ss_pred ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 554 ~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
+||-++|++++|+|||+..++|++||.||+.-...
T Consensus 284 kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 284 KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999999999999986553
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.8e-33 Score=248.91 Aligned_cols=284 Identities=20% Similarity=0.316 Sum_probs=240.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-------cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-------SMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (764)
Q Consensus 180 h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw 252 (764)
..+.+.|..|||||++|++|+.||-|.+||..+|+....+.. -+..+|.|+.|+.|.. +||+|+.||.|++|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVW 290 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEE
Confidence 356788999999999999999999999999999986654431 1257899999999999 99999999999999
Q ss_pred ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (764)
Q Consensus 253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (764)
.+++|.++..+..+|...|+++.|+.|+..+++++.|.++++.-+..+ ++++.+.||+.-|+...|.+||.+++++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----hhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999999999899999999999999999999999999999977665 7888999999999999999999999999
Q ss_pred eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee
Q 004270 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (764)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 412 (764)
+.||++++|+..+..+...+...
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~--------------------------------------------------------- 389 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPL--------------------------------------------------------- 389 (508)
T ss_pred cCCccEEEecCcchhhhhhccCC---------------------------------------------------------
Confidence 99999999998777665543221
Q ss_pred cceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEE
Q 004270 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMIS 491 (764)
Q Consensus 413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s 491 (764)
+...+|.++-.-|. -..++.
T Consensus 390 -----------------------------------------------------------~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 390 -----------------------------------------------------------GTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred -----------------------------------------------------------CCcccceeEEEcCCCCceEEE
Confidence 22233444444442 245666
Q ss_pred EeCCCeEEEEECCCCCeeeeEecC----cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270 492 AGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~ 567 (764)
|....+|.+.++. |+.++.+... +...+.+.||.|.++.+.++|+.++-|.+.+|++.+.+.-|...+-.++-+|
T Consensus 411 CNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred EcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence 6666777777655 4455555332 5677889999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEE
Q 004270 568 DGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 568 dg~~l~s~s~dg~i~iwd 585 (764)
..+.||+-++||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-30 Score=229.17 Aligned_cols=233 Identities=18% Similarity=0.272 Sum_probs=204.6
Q ss_pred ecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 89 ~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
+.||+.+++.+.+ +|+.|.||+.|.+..||--.+++. +.++..|.+.+++|.+..+. .++++|+.|.++++|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s--~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLW 79 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCc--ceeeeccccceeEEE
Confidence 7899999999998 699999999999999999989998 89999999999999999999 899999999999999
Q ss_pred eCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc-----CCeEEEEEcc-------CCceEEEEeccCCCCEEEEEEee
Q 004270 167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS-----DGKIHVHNVR-------YDEELVTFTHSMRGAVTALAFSS 234 (764)
Q Consensus 167 d~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~l~fs~ 234 (764)
|+++|+++..++. ..+|..+.|+++|++++..+. .+.|.++|++ ..++...+..+ ...++.+-|.|
T Consensus 80 Dv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~ 157 (327)
T KOG0643|consen 80 DVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGP 157 (327)
T ss_pred EcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecc
Confidence 9999999999987 789999999999998887654 3779999998 44557777666 68899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC
Q 004270 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 235 d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
-++ .|++|..||.|.+||+++++....-...|...|+.++++++..++++++.|.+-++||+.+- .+++.. ...
T Consensus 158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty-~te 231 (327)
T KOG0643|consen 158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTY-TTE 231 (327)
T ss_pred cCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEe-eec
Confidence 999 89999999999999999985555444489999999999999999999999999999998876 444444 456
Q ss_pred CCCeeEEEecCCCEEEEEeCC
Q 004270 315 APPLCIRFYANGRHILSAGQD 335 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~d 335 (764)
.||++.+++|-..+++.|+..
T Consensus 232 ~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ccccceecccccceEEecCCc
Confidence 799999999976677766543
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=2.3e-31 Score=231.69 Aligned_cols=281 Identities=16% Similarity=0.255 Sum_probs=247.5
Q ss_pred ccccCeeEEEEec---CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 266 AHDNAIISLHFFA---NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 266 ~h~~~v~~l~~~~---~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
+|..+|..++|+| +|-+|++++.|+.-.+-+=+++ .-+.++.||.+.|.+.....+....++++.|-+-++||
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg----dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG----DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC----CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 8999999999986 7889999999998776644444 56788899999999999998888899999999999999
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
..++.....+ .
T Consensus 88 a~tgdelhsf---------------------------------------------------------------------~ 98 (334)
T KOG0278|consen 88 AVTGDELHSF---------------------------------------------------------------------E 98 (334)
T ss_pred hhhhhhhhhh---------------------------------------------------------------------h
Confidence 9887766554 2
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
|...|.+++|+.|.++|++|+.+..+++||++.......- ..+|.+.|..+.|....+.+++++.|++||+||
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E-------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE-------ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD 171 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh-------hcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence 4467899999999999999999999999999875543322 249999999999999889999999999999999
Q ss_pred CCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEE
Q 004270 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582 (764)
Q Consensus 503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~ 582 (764)
..++..++++....+++++.++++|++|.++ ..+.|.+||..+..+++.++-. -.|.+..++|+...++.|++|..++
T Consensus 172 ~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 172 HRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred eccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEE
Confidence 9999999999999999999999999988766 4678999999999999888744 4699999999999999999999999
Q ss_pred EEEcCccceEEEE-e-eCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 583 IWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 583 iwd~~~~~~~~~~-~-~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.||..+|+.+..+ + ++.+|.|+.|+|||..-|+++.|| +|+||...
T Consensus 250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt~ 297 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQTT 297 (334)
T ss_pred EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc-eEEEEEec
Confidence 9999999999886 3 466799999999999999999999 79999864
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.9e-30 Score=236.05 Aligned_cols=279 Identities=19% Similarity=0.313 Sum_probs=237.3
Q ss_pred CCCcceEEEEEeCCeEEEEE-CCeEEEEec-CceEEEecccccceEEEEE---e--CCEEEEEecCCcEEEEEccCCccc
Q 004270 54 QLPKKIRALASYRDYTFAAY-GNHIAVVKR-AHQVATWSRHSAKVNLLLL---F--GEHILSIDIDGNMFIWAFKGIEEN 126 (764)
Q Consensus 54 ~~~~~I~~~~~~~~~~~~a~-g~~i~vw~~-~~~~~~~~~h~~~v~~l~~---~--g~~l~s~~~dg~v~vWd~~~~~~~ 126 (764)
.|+..|.++...+...+..+ ++.+++|+. |+...++.||.++|.++++ + ...+++++.|.++++|.++.++..
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 36778888888766666554 677999997 6778889999999998885 2 346999999999999999988875
Q ss_pred ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC-------------------------CeEEEEEcCCC
Q 004270 127 LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-------------------------KKKLYEFKGWG 181 (764)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~h~ 181 (764)
...+....+|...+.++...+++ .++++|+.|.+|.+|+..+ +.++-++.||.
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhHHhHhcccccceeEEEecCCC--CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 55555556888888889899999 8999999999999999321 23567789999
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc--ee
Q 004270 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RL 259 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~ 259 (764)
.+|.++.|++ ...+.+++.|.+|+.||+.+++.+.++.. +..+.+++++|... +|++|+.|..|++||.+++ ..
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccc-eeeecCCCCceeecCCCCCCCce
Confidence 9999999999 56899999999999999999999999887 47899999999888 9999999999999999876 33
Q ss_pred -eeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 260 -QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 260 -~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
..++. +|.+.|.++.|+|... .|++++.||++++||++... ..+..+.+|...|.++.|. ++..+++||.|.+
T Consensus 337 v~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 337 VSQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNK 411 (423)
T ss_pred eEEeee-cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEecc-CCceEEeccCcce
Confidence 34444 9999999999999654 78999999999999998764 3567778999999999998 5668999999999
Q ss_pred EEEEEe
Q 004270 338 FRLFSV 343 (764)
Q Consensus 338 i~i~d~ 343 (764)
|+++.-
T Consensus 412 l~i~~~ 417 (423)
T KOG0313|consen 412 LRIFKG 417 (423)
T ss_pred EEEecc
Confidence 999864
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-30 Score=245.98 Aligned_cols=276 Identities=15% Similarity=0.314 Sum_probs=237.4
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
...|++++|+|..++-+|+.+ .-.+.||+..+.....++. -....|.++.|..||++|+.|+..|.|+++|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--- 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--- 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH---
Confidence 468999999998776666655 3579999998887777666 56788999999999999999999999999985543
Q ss_pred ceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270 304 PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (764)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (764)
..++.+.+|+.++..+.|+| ++..+++|+.|+.+++||+.+...
T Consensus 101 -~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---------------------------------- 145 (487)
T KOG0310|consen 101 -VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---------------------------------- 145 (487)
T ss_pred -HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----------------------------------
Confidence 57888899999999999999 667778888889899999754210
Q ss_pred ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
..+
T Consensus 146 -------------------------------------------------------------------~~~---------- 148 (487)
T KOG0310|consen 146 -------------------------------------------------------------------QAE---------- 148 (487)
T ss_pred -------------------------------------------------------------------EEE----------
Confidence 011
Q ss_pred cCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~ 540 (764)
+.+|++.|.+.+++|.+ .+++|||.||.|++||++.. ..+.++.++.+|..+.+-|.|.++|+++. ..|+
T Consensus 149 -------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vk 220 (487)
T KOG0310|consen 149 -------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVK 220 (487)
T ss_pred -------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEE
Confidence 13899999999999965 48899999999999999977 88889999999999999999999998864 5899
Q ss_pred EEEccCC-eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeC
Q 004270 541 LFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 541 v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d 619 (764)
|||+-+| +.+..+..|...|||+.+..+++.|++++.|+.|++||+.+.+.+..+..+++|.+++.+|+++.++.|..+
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 9999955 555556669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEE
Q 004270 620 QNGVYL 625 (764)
Q Consensus 620 ~~~i~l 625 (764)
|. +.+
T Consensus 301 Gl-v~~ 305 (487)
T KOG0310|consen 301 GL-VSI 305 (487)
T ss_pred ce-eee
Confidence 83 443
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=232.26 Aligned_cols=291 Identities=21% Similarity=0.324 Sum_probs=241.8
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC------------c------eeeeeeecccccCeeEEEEecCCCE
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------R------RLQSVIREAHDNAIISLHFFANEPV 282 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~------------~------~~~~~~~~~h~~~v~~l~~~~~~~~ 282 (764)
..|++++.+.+|++||. ++|+|+.|..|+|.|++. + -.+.++. .|...|+++.|+|....
T Consensus 109 t~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETI 186 (430)
T ss_pred eecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhhe
Confidence 34589999999999999 999999999999999861 1 2344554 79999999999999999
Q ss_pred EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (764)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (764)
|++++.|++|+++|+...... +..+.+ ....+|.++.|+|.|.+|+.|..-.++++||+.+.++...
T Consensus 187 LiS~srD~tvKlFDfsK~saK-rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----------- 253 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAK-RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----------- 253 (430)
T ss_pred EEeccCCCeEEEEecccHHHH-HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-----------
Confidence 999999999999999765321 122222 3467899999999999999999999999999987654221
Q ss_pred hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442 (764)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 442 (764)
..+..+|...|+++.+++.|+..++|
T Consensus 254 ------------------------------------------------------anPd~qht~ai~~V~Ys~t~~lYvTa 279 (430)
T KOG0640|consen 254 ------------------------------------------------------ANPDDQHTGAITQVRYSSTGSLYVTA 279 (430)
T ss_pred ------------------------------------------------------cCcccccccceeEEEecCCccEEEEe
Confidence 11334677999999999999999999
Q ss_pred ecCCcEEEEECcCCcccceecCccccccccccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc-----
Q 004270 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----- 516 (764)
Q Consensus 443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----- 516 (764)
+.||.|++||--+++.+.++. .+|.+ .|.+..|..+++++++.|.|..+++|.+.+++++..+.+.+
T Consensus 280 SkDG~IklwDGVS~rCv~t~~-------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq 352 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCVRTIG-------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ 352 (430)
T ss_pred ccCCcEEeeccccHHHHHHHH-------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch
Confidence 999999999999999999887 47765 78999999999999999999999999999999999987652
Q ss_pred -ceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeEEEEe-ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 517 -SLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 517 -~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
--+...|+....+++.-.+ .+.+.-||.++...+..+ .||.+.+..+.-||.+.-+++++.|..+|+|--.
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 2344567776777776544 578899999988665554 3799999999999999999999999999999643
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-28 Score=222.36 Aligned_cols=287 Identities=15% Similarity=0.212 Sum_probs=241.5
Q ss_pred EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC--CCcEEE
Q 004270 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKM 294 (764)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--d~~i~v 294 (764)
+.+.. ..+.|.++.|+++|. +|++++.|..+++||..+++.+.++. .+.-.+..++|......++.++. |.+||.
T Consensus 8 k~f~~-~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 8 KVFRE-TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccc-CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEE
Confidence 34433 367899999999999 88888999999999999999999998 77788999999888888887776 899999
Q ss_pred EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
.++..+ +.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+..
T Consensus 85 Lsl~dN----kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------------------- 140 (311)
T KOG1446|consen 85 LSLHDN----KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-------------------- 140 (311)
T ss_pred EEeecC----ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--------------------
Confidence 999877 78999999999999999999889999999999999999986654433221
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~ 454 (764)
..-..++++|.|-++|++...+.|++||++
T Consensus 141 --------------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 141 --------------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred --------------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 344567999999999999999999999998
Q ss_pred CCcc--cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc----ceEEEEEeecCC
Q 004270 455 SGIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNG 528 (764)
Q Consensus 455 ~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~i~~~~~s~~~~ 528 (764)
+-.. ...+.. ..+.....+.+.|+|+|++++.+...+.+++.|.-+|..+..+.... -....+|+||++
T Consensus 171 s~dkgPF~tf~i-----~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 171 SFDKGPFTTFSI-----TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred ccCCCCceeEcc-----CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 6422 222221 11456788999999999999999999999999999999988887652 225788999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEeec-CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 529 LLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 529 ~la~~~~d~~i~v~d~~~~~~~~~~~~-h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
++.+|++||+|++|+++++..+..+++ +.+++.++.|+|.-.+++|+ +..+.+|=..
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 999999999999999999999999999 78999999999976666655 5678888654
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-29 Score=252.44 Aligned_cols=278 Identities=20% Similarity=0.343 Sum_probs=240.5
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270 185 SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (764)
Q Consensus 185 ~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 264 (764)
.-+.|+ ..+.||+|.. ..|.+|+..+++.......+ ...|+++.|+++|. +|++|..+|.|.|||..+.+.+..+.
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccccc
Confidence 345677 4467888775 57999999999876666665 78999999999999 99999999999999999999999998
Q ss_pred cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
..|...|.+++|. +..+.+|+.|+.|..+|++...... ..+.+|...|..+.|++|++++++|+.|+.+.|||..
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 4499999999997 6689999999999999998775332 2478999999999999999999999999999999962
Q ss_pred cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (764)
....
T Consensus 332 ~~~p---------------------------------------------------------------------------- 335 (484)
T KOG0305|consen 332 SPEP---------------------------------------------------------------------------- 335 (484)
T ss_pred Cccc----------------------------------------------------------------------------
Confidence 2111
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEe--CCCeEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAG--YHGDIKVW 501 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~--~dg~v~iw 501 (764)
...+ ..|..+|.+++|+| ...+||+|+ .|++|++|
T Consensus 336 ----------------------------------~~~~--------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 336 ----------------------------------KFTF--------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred ----------------------------------cEEE--------eccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 1111 28999999999999 456788876 79999999
Q ss_pred ECCCCCeeeeEecCcceEEEEEeecCCEEEEE--eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~--~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg 579 (764)
|..+++.+..+.....|..+.|++..+-++++ ..++.|.||+..+.+.+..+.+|..+|..+++||||..+++|+.|.
T Consensus 374 n~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 374 NTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred EcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 99999999999999999999999998766654 4577999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCcc
Q 004270 580 SLRIWDVILA 589 (764)
Q Consensus 580 ~i~iwd~~~~ 589 (764)
++++|++-..
T Consensus 454 Tlrfw~~f~~ 463 (484)
T KOG0305|consen 454 TLRFWNLFDE 463 (484)
T ss_pred cEEeccccCC
Confidence 9999998764
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=243.38 Aligned_cols=285 Identities=22% Similarity=0.384 Sum_probs=248.1
Q ss_pred eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE
Q 004270 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~ 339 (764)
...+. .|.+.+..+.|.++...|++|+.|..|++|+..... ......+.|..++++++.|.++++++++++.|+.++
T Consensus 168 ~~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 168 LFVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 33444 899999999999998899999999999999877654 456778888999999999999999999999999999
Q ss_pred EEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC
Q 004270 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (764)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 419 (764)
+|++...+....++
T Consensus 245 ~Wnvd~~r~~~TLs------------------------------------------------------------------ 258 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLS------------------------------------------------------------------ 258 (459)
T ss_pred eeeccchhhhhhhc------------------------------------------------------------------
Confidence 99997765544432
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (764)
Q Consensus 420 ~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 499 (764)
+|...|+++.|......++.|+.|.+|+.||++......++. ....+..|+.+ ...++++-.|++|+
T Consensus 259 --GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 259 --GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred --ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec--ceeeeecccccceE
Confidence 577899999999888889999999999999999987777653 34456666665 45788999999999
Q ss_pred EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC----CCCeeEEEEcCCCcEEEEE
Q 004270 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLLSS 575 (764)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h----~~~i~~l~~s~dg~~l~s~ 575 (764)
+||.++..+....+.++.|+++..++++..|.+.+.|.++.+.|+.+.+....+.+. ....+.+.|||++.|+++|
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 999999999999999999999999999999999999999999999999888887642 2348899999999999999
Q ss_pred eCCCcEEEEEcCccceEEEEeeCC---ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 576 GMDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 576 s~dg~i~iwd~~~~~~~~~~~~~~---~v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
|.||.|+||++.++++...+.... .|++++|+|.|..|++++.+. .+.+|.
T Consensus 406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~-~v~lW~ 459 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK-AVTLWT 459 (459)
T ss_pred cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc-ceEecC
Confidence 999999999999999998886533 499999999999999999988 699994
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=8e-31 Score=244.79 Aligned_cols=276 Identities=19% Similarity=0.348 Sum_probs=240.6
Q ss_pred CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
|.+.+..+.|-++.. .|++|+.|..|++|+....+ .+.++. +..++|+++.|.++++.+++++.|+.+++|+++..
T Consensus 174 h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred cccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 478899999999876 79999999999999987776 666666 77889999999999999999999999999998876
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
+...++.||.+.|+++.|......+++|+.|.+++.||+....+..++...
T Consensus 252 ----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~------------------------- 302 (459)
T KOG0288|consen 252 ----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG------------------------- 302 (459)
T ss_pred ----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-------------------------
Confidence 778888999999999999987767999999999999999876655443211
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
+.+..++.+ +..+++|..|+.|++||.++.....
T Consensus 303 --------------------------------------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 303 --------------------------------------------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred --------------------------------------------ccccceEec--ceeeeecccccceEEEeccCCceee
Confidence 233333333 5678889999999999999999888
Q ss_pred eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-----cceEEEEEeecCCEEEEEeC
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVAD 535 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~i~~~~~s~~~~~la~~~~ 535 (764)
..+ . .+.|+++..++++..+.+++.|.++.+.|+++.+....+... ...+.+.|||++.|+|+|+.
T Consensus 337 sv~--------~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 337 SVP--------L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred Eee--------c-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 874 3 459999999999999999999999999999999988887543 66899999999999999999
Q ss_pred CCeEEEEEccCCeEEEEeecCCCC--eeEEEEcCCCcEEEEEeCCCcEEEE
Q 004270 536 DLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIW 584 (764)
Q Consensus 536 d~~i~v~d~~~~~~~~~~~~h~~~--i~~l~~s~dg~~l~s~s~dg~i~iw 584 (764)
||.|+||++.++++...+...... |++++|+|.|.+|++++.++.+.+|
T Consensus 408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999999999998875544 9999999999999999999999999
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.3e-29 Score=218.65 Aligned_cols=279 Identities=14% Similarity=0.167 Sum_probs=239.0
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe-ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd 253 (764)
+.+++|.+.|.+++|+-+|..|++|+.|+++.+|++..++...... .+|.+.|-.++|+|....++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999999876555443 344678999999998888999999999999999
Q ss_pred CCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270 254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (764)
Q Consensus 254 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (764)
++.+++...+. ..+.=.-+.|+|+|.+++.++.|..|...|.... +.... ......+..++|+-++.+++...
T Consensus 94 ~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~----~~~~~-~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 94 IRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTY----KIVNE-EQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEeccc----ceeeh-hcccceeeeeeecCCCCEEEEec
Confidence 99999999887 3444456889999999999999999999987665 22222 24456678889998788887777
Q ss_pred CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (764)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 413 (764)
..|.|.|.....-+....
T Consensus 167 GlG~v~ILsypsLkpv~s-------------------------------------------------------------- 184 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQS-------------------------------------------------------------- 184 (313)
T ss_pred CCceEEEEeccccccccc--------------------------------------------------------------
Confidence 789999987653332222
Q ss_pred ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe
Q 004270 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG 493 (764)
Q Consensus 414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 493 (764)
...|+....|+.|+|+|+++++|+.|..+.+||++.....+.+. .+.-+|+.+.|+.+|++|++++
T Consensus 185 ------i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--------RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 185 ------IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--------RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred ------cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec--------cccCceEEEEeccCcceeeccC
Confidence 22466888999999999999999999999999999998888886 7899999999999999999999
Q ss_pred CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC
Q 004270 494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536 (764)
Q Consensus 494 ~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d 536 (764)
.|..|-|=+.++|..+..++..++...++|+|...+||.+++|
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999999999999999876
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=242.42 Aligned_cols=279 Identities=20% Similarity=0.296 Sum_probs=236.4
Q ss_pred CCCeEEEEEcCCCCE-EEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270 181 GSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~-la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~ 259 (764)
...|++++|+|...+ +|+.+ .-.+.||+..+.....++... +..|.++.|..||+ +|++|+..|.|+|||+.+...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhh-ccceeEEEeecCCe-EEEccCCcCcEEEeccccHHH
Confidence 578999999996543 44444 357999999988777766654 67899999999999 999999999999999877777
Q ss_pred eeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCc
Q 004270 260 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRA 337 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~ 337 (764)
+..+. +|+.+|..+.|+|.+ ..+++|+.|+.+++||+++. .....+.+|..-|.|.+++| ++..++|||.||.
T Consensus 103 LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 103 LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred HHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----EEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 78887 999999999999965 47788888999999999876 34567889999999999999 5668899999999
Q ss_pred EEEEEeecc-cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 338 FRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 338 i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
|++||++.. ....++
T Consensus 178 vrl~DtR~~~~~v~el---------------------------------------------------------------- 193 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVEL---------------------------------------------------------------- 193 (487)
T ss_pred EEEEEeccCCceeEEe----------------------------------------------------------------
Confidence 999999865 222222
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (764)
.|..+|..+.+-|.|..+++++. ..|++||+.+|....... ..|...|+|+.+..++..|++++-|+
T Consensus 194 -----nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~-------~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 194 -----NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSM-------FNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred -----cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhh-------hcccceEEEEEeecCCceEeeccccc
Confidence 34588999999999999888754 479999999655444332 25999999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270 497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~ 544 (764)
.|++||+.+-+.+..+...++|.+++.+|++..+++|..||.+.+-+.
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 999999999999999999999999999999999999999998877643
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-29 Score=249.89 Aligned_cols=269 Identities=18% Similarity=0.232 Sum_probs=235.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
+.|++|... .|++|+..+++.......+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+..+|...|.+++
T Consensus 189 n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 189 NVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA 267 (484)
T ss_pred CeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEe
Confidence 467777554 5999999999877776666899999999999999999999999999999999999999986799999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeee-eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 310 (764)
|. +. .+.+|+.++.|..+|++..+.... +. +|...|..+.|++|+.++++|+.|+.+.|||.... .....+
T Consensus 268 W~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----~p~~~~ 339 (484)
T KOG0305|consen 268 WN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----EPKFTF 339 (484)
T ss_pred cc--Cc-eEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCCeeccCCCccceEeccCCCc----cccEEE
Confidence 98 33 899999999999999998866655 55 89999999999999999999999999999988443 566677
Q ss_pred cCCCCCCeeEEEec-CCCEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270 311 SGHSAPPLCIRFYA-NGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (764)
Q Consensus 311 ~~h~~~v~~i~~~~-~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (764)
..|.+.|..++|+| ....||+|+ .|+.|++||+.++.....+..
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--------------------------------- 386 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--------------------------------- 386 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---------------------------------
Confidence 89999999999999 667888875 699999999987766555422
Q ss_pred cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE--EecCCcEEEEECcCCcccceecCc
Q 004270 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRGSYLDM 465 (764)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~~~~~~~ 465 (764)
...|..+.|++..+-+++ |+.++.|.+|+..+......+.
T Consensus 387 ------------------------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-- 428 (484)
T KOG0305|consen 387 ------------------------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-- 428 (484)
T ss_pred ------------------------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--
Confidence 288999999999977765 5677899999999988887775
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (764)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 506 (764)
+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 429 ------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 ------GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ------CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999998764
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=257.19 Aligned_cols=300 Identities=16% Similarity=0.247 Sum_probs=219.7
Q ss_pred CCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC----------CCCEEEEEEee---C
Q 004270 170 TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----------RGAVTALAFSS---D 235 (764)
Q Consensus 170 ~~~~~~~~~-~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~----------~~~v~~l~fs~---d 235 (764)
.....+.+. .|.+.|+++.||+||+|||+|+.||.|+||.+...+.. ...... .+.+..+.-++ .
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccccccchhhhhhhhccccCcccccccccc
Confidence 334456666 89999999999999999999999999999998764431 111110 01111111111 0
Q ss_pred CC-CEEEEEeCCCcEEEEECC----CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec
Q 004270 236 GQ-PLLASGASSGVISIWNLE----KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310 (764)
Q Consensus 236 ~~-~~l~sg~~dg~i~iwd~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 310 (764)
++ ...-.+..... .+.+.. ..+++..+. +|.+.|..+.|+.++ +|++++.|.+||+|++... .++..+
T Consensus 334 ~~~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~----~CL~~F 406 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK----ECLKVF 406 (712)
T ss_pred ccccccccccCCcc-ccCCCccccccccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCc----ceeeEE
Confidence 11 01112222223 222222 236677777 999999999999776 8999999999999988766 567666
Q ss_pred cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270 311 SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (764)
Q Consensus 311 ~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (764)
.|..-|+|++|+| |.+++++|+-|+.+|+|++...+..
T Consensus 407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv---------------------------------------- 445 (712)
T KOG0283|consen 407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV---------------------------------------- 445 (712)
T ss_pred -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE----------------------------------------
Confidence 7999999999999 9999999999999999998654322
Q ss_pred cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
.|. .-..-|++++++|+|++.++|+-+|.+++|+....+......-.....
T Consensus 446 --------------~W~---------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 446 --------------DWN---------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred --------------eeh---------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 121 112789999999999999999999999999998777665543211111
Q ss_pred -cccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270 470 -NYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (764)
Q Consensus 470 -~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~ 544 (764)
...|. .|+++.|.|.. ..++..+.|..|||+|.....++..+++. ..-....|+.||++|+++++|..|++|+.
T Consensus 497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 497 KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 11233 89999999744 45778889999999999888888888755 44466789999999999999999999998
Q ss_pred cCCe
Q 004270 545 VALR 548 (764)
Q Consensus 545 ~~~~ 548 (764)
....
T Consensus 576 ~~~~ 579 (712)
T KOG0283|consen 576 DSFN 579 (712)
T ss_pred CCCc
Confidence 6543
No 82
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6e-29 Score=236.36 Aligned_cols=317 Identities=18% Similarity=0.244 Sum_probs=248.9
Q ss_pred CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCE
Q 004270 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 282 (764)
Q Consensus 203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 282 (764)
..+.+||+++|....++++.....-.++..- .+.+++++-.....|.+|.+.......... --.++|.+++-+|+|.+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGPVHALASSNLGYF 95 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc-ccccceeeeecCCCceE
Confidence 5699999999999999987522222333322 234345444456689999987665444222 35788999999999999
Q ss_pred EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (764)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (764)
|+.|+..+.+++|.+.++ .++..+.+|..+|+|+.|+.||.+|++||.||.|.+|++..-
T Consensus 96 l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l---------------- 155 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL---------------- 155 (476)
T ss_pred EEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee----------------
Confidence 999989999999999887 788888999999999999999999999999999999997421
Q ss_pred hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442 (764)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 442 (764)
+.+
T Consensus 156 -----------------------------------------------------------------------------v~a 158 (476)
T KOG0646|consen 156 -----------------------------------------------------------------------------VSA 158 (476)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 111
Q ss_pred ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC--CCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEE
Q 004270 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK 520 (764)
Q Consensus 443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~ 520 (764)
..++ +-.....+ ..|.-+|+.+...+. ..+++|++.|.++++||+..+.++.++..+..+.+
T Consensus 159 ~~~~--------~~~p~~~f--------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~a 222 (476)
T KOG0646|consen 159 DNDH--------SVKPLHIF--------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKA 222 (476)
T ss_pred ccCC--------Cccceeee--------ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCccee
Confidence 1111 11122222 289999999988765 46899999999999999999999999999999999
Q ss_pred EEEeecCCEEEEEeCCCeEEEEEccCC----------------eEEEEeecCCC--CeeEEEEcCCCcEEEEEeCCCcEE
Q 004270 521 IVYHRVNGLLATVADDLVIRLFDVVAL----------------RMVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLR 582 (764)
Q Consensus 521 ~~~s~~~~~la~~~~d~~i~v~d~~~~----------------~~~~~~~~h~~--~i~~l~~s~dg~~l~s~s~dg~i~ 582 (764)
++..|.++.+.+|+.+|.|.+.++... ..+..+.||.+ +|++++.+-||..|++|+.||.|+
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 999999999999999999999887543 23566889998 999999999999999999999999
Q ss_pred EEEcCccceEEEEe-eCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccCC
Q 004270 583 IWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG 634 (764)
Q Consensus 583 iwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~ 634 (764)
|||+.+.++++++. ..++|+.+.+.|=-+-...+......+..|.++.+-.+
T Consensus 303 vWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i~~ 355 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMIPN 355 (476)
T ss_pred EEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhccCCc
Confidence 99999999999988 67789999997643333332222225777887765554
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.9e-29 Score=238.52 Aligned_cols=302 Identities=18% Similarity=0.275 Sum_probs=237.4
Q ss_pred EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcE
Q 004270 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292 (764)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i 292 (764)
..+.++ ...|+++++.|.|. .+++|+.|..|++||+... +....+.......|.+++|++.+..|++.+.....
T Consensus 161 i~l~hg-tk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHG-TKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCC-ceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 344444 77899999999999 8999999999999998654 33444444566789999999999999888888899
Q ss_pred EEEEecCCC------C--CceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270 293 KMWIFDTTD------G--DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (764)
Q Consensus 293 ~vw~~~~~~------~--~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (764)
+++|-+... + -.+-+...+||...++|.+|+| +...+++++.||++|+|++...+...+...
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik--------- 309 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK--------- 309 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---------
Confidence 999865431 1 1111234468999999999999 556799999999999999976542221110
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
-....+..-.++.++|+++|+.++.|+
T Consensus 310 -----------------------------------------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc 336 (641)
T KOG0772|consen 310 -----------------------------------------------------TKPAGGKRVPVTSCAWNRDGKLIAAGC 336 (641)
T ss_pred -----------------------------------------------------eccCCCcccCceeeecCCCcchhhhcc
Confidence 111123447889999999999999999
Q ss_pred cCCcEEEEECcCCcccceecCccccccccccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-eeeeEe---cCcc
Q 004270 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE---VGCS 517 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~---~~~~ 517 (764)
.||.|.+|+..+......+. ...+|.. .|++|.|+++|++|++-+.|+++++||++..+ ++.... ...+
T Consensus 337 ~DGSIQ~W~~~~~~v~p~~~-----vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 337 LDGSIQIWDKGSRTVRPVMK-----VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP 411 (641)
T ss_pred cCCceeeeecCCcccccceE-----eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence 99999999986544433332 1247877 99999999999999999999999999998653 343332 2367
Q ss_pred eEEEEEeecCCEEEEEeC------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 518 LVKIVYHRVNGLLATVAD------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 518 i~~~~~s~~~~~la~~~~------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
-+.++|||+.+++++|.. .|.+.+||..+...+.++.-....|..+.|+|.-+.|+.++.||+++||==+
T Consensus 412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 788999999999999864 5789999999999999988888889999999998889999999999988544
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=9.4e-29 Score=222.12 Aligned_cols=292 Identities=19% Similarity=0.319 Sum_probs=243.4
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC--------------CCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (764)
.|.+++.+.+|++||.++++|+.|.+|++.|++.. .....+++.+..|..+|+++.|+|....|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 79999999999999999999999999999998721 1112467888899999999999999999999
Q ss_pred EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (764)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (764)
++.|+++++||+......+.+..
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~--------------------------------------------------------- 212 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKV--------------------------------------------------------- 212 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHH---------------------------------------------------------
Confidence 99999999999865433222110
Q ss_pred ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
+ ....++.++.|+|.|.++++|+.-..+++||+.+-+....-. ....|.+.|+++.+++.+++.++
T Consensus 213 -----~----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 213 -----F----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred -----h----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----cccccccceeEEEecCCccEEEE
Confidence 0 112689999999999999999999999999999877655432 12489999999999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC--C---CeeEE
Q 004270 492 AGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT--D---RITDF 563 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~--~---~i~~l 563 (764)
++.||.|++||--+++++.++.. ...|.+..|..+++++.+.+.|..+++|.+.+++++.++.|.. + --+..
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 99999999999999999988853 3789999999999999999999999999999999999988641 1 23455
Q ss_pred EEcCCCcEEEEEeC-CCcEEEEEcCccceEEEE--eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 564 CFSEDGKWLLSSGM-DGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 564 ~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.|+....|++.-.+ .+.+.-||..++..+..+ .+...+..+.-||.+.-+.|++.|- .+++|--+
T Consensus 359 vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~-raRFWyrr 426 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF-RARFWYRR 426 (430)
T ss_pred hhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc-eeeeeeec
Confidence 68888888886653 467999999998766544 4555699999999999999999998 59999754
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.1e-28 Score=253.79 Aligned_cols=281 Identities=22% Similarity=0.377 Sum_probs=243.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE-EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (764)
Q Consensus 180 h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~ 258 (764)
+...+.+..|. ..++++++.+++|++|+..++..+.. +.+ |.+.|.+++|..-+. +|++|+.|.++++||..+|+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCc
Confidence 56778888888 56899999999999999999999988 555 589999999987444 99999999999999999999
Q ss_pred eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcE
Q 004270 259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338 (764)
Q Consensus 259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i 338 (764)
+...+. +|.+.|.++... ...+++|+.|.+|++|+++.+ ..+..+.+|..+|+++..+ +.++++|+.|++|
T Consensus 283 C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 283 CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 999999 999999999874 447888999999999999865 6788888899999999997 7799999999999
Q ss_pred EEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeec
Q 004270 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (764)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 418 (764)
++|++.+.+....
T Consensus 354 ~VW~~~~~~cl~s------------------------------------------------------------------- 366 (537)
T KOG0274|consen 354 KVWDPRTGKCLKS------------------------------------------------------------------- 366 (537)
T ss_pred EEEEhhhceeeee-------------------------------------------------------------------
Confidence 9999764433222
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeE
Q 004270 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498 (764)
Q Consensus 419 ~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v 498 (764)
+ .+|...|.++.+.+. ..+++|+.|++|
T Consensus 367 -------------------------------------------l--------~gH~~~V~sl~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 367 -------------------------------------------L--------SGHTGRVYSLIVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred -------------------------------------------e--------cCCcceEEEEEecCc-ceEEeeeeccce
Confidence 2 389999999988865 789999999999
Q ss_pred EEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec-CCCCeeEEEEcCCCcEEEEEe
Q 004270 499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-h~~~i~~l~~s~dg~~l~s~s 576 (764)
++||+.+. +++..+.++..+. ..+...+++|++++.|++|++||..++++++.+.+ |...|+.+++. ...+++++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~ 471 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS 471 (537)
T ss_pred EeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence 99999999 9999998885544 33444588999999999999999999999999999 77889999887 45688889
Q ss_pred CCCcEEEEEcCccceEEEE
Q 004270 577 MDGSLRIWDVILARQIDAI 595 (764)
Q Consensus 577 ~dg~i~iwd~~~~~~~~~~ 595 (764)
.|+++++||+++++++..+
T Consensus 472 ~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cCCeeEEEecccCchhhhh
Confidence 9999999999999988766
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-27 Score=213.72 Aligned_cols=295 Identities=12% Similarity=0.184 Sum_probs=237.0
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC--CCc
Q 004270 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS--SGV 248 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~--dg~ 248 (764)
.++.+.|......|.++.|+++|.+|++++.|..++|||..+++.+.++... +-.+..+.|..... .++.++. |.+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~~-~~i~sStk~d~t 81 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHSN-TVIHSSTKEDDT 81 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCCc-eEEEccCCCCCc
Confidence 3445556667889999999999999999999999999999999999999876 56788899987766 4555554 889
Q ss_pred EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
|+..++.+.+.++.+. ||...|.+++.+|-+..+++++.|++|++||++.......+ +...-..++|.|+|-.
T Consensus 82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l------~~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL------NLSGRPIAAFDPEGLI 154 (311)
T ss_pred eEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE------ecCCCcceeECCCCcE
Confidence 9999999999999999 99999999999999999999999999999999866443222 2334456789999999
Q ss_pred EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (764)
++++.....|++||++.-..- |.
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkg-------------------------PF-------------------------------- 177 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKG-------------------------PF-------------------------------- 177 (311)
T ss_pred EEEecCCCeEEEEEecccCCC-------------------------Cc--------------------------------
Confidence 999888879999998753210 11
Q ss_pred ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE
Q 004270 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (764)
..+....+.....+.+.|||||+++++++..+.+++.|.-+|.....+..... ...--....|.||+++
T Consensus 178 ------~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~-----~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 178 ------TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN-----AGNLPLSATFTPDSKF 246 (311)
T ss_pred ------eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC-----CCCcceeEEECCCCcE
Confidence 11111113347788999999999999999999999999999998888763111 1111256789999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270 489 MISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (764)
Q Consensus 489 l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~ 544 (764)
+++|+.||+|.+|+++++..+..+... .++.++.|+|...++++++. .+.+|=.
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p 302 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLP 302 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEec
Confidence 999999999999999999999999874 88999999998777777654 5556643
No 87
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-27 Score=233.42 Aligned_cols=535 Identities=15% Similarity=0.217 Sum_probs=308.2
Q ss_pred eEEEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccccceeeE--ecCCccccEEEEeCCCCCCEEEEEeC
Q 004270 85 QVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHV--KLDDKFTPTCIMHPDTYLNKVIVGSQ 159 (764)
Q Consensus 85 ~~~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~l~~~~~ 159 (764)
.+..+.+|...|+.+.| +...|++|+.|..|+||.+..+-........+ ......+.++-|||... -|+..+.
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaD--gil~s~a 148 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTAD--GILASGA 148 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcC--ceEEecc
Confidence 46668999999999986 57899999999999999998443311111122 22233344555999884 4555557
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.|.++|||+.+++.+.++.+|...|.++.|+.||.+|++.+.|..|+|||.+. ++.++....|....=..+.|..+-..
T Consensus 149 ~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 149 HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 78999999999999999999999999999999999999999999999999885 45666665543334456777766554
Q ss_pred EEEEEeC---CCcEEEEECCCc-eeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCC----------
Q 004270 239 LLASGAS---SGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGD---------- 303 (764)
Q Consensus 239 ~l~sg~~---dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~---------- 303 (764)
++-+|-. -..|++||.+.. ..++++.......|.---|.||.++|+-++ .++.+..+.+......
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle 308 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE 308 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch
Confidence 5555542 357899998764 455555533445666667888888666555 3566666643221000
Q ss_pred ---------------------ceee----------------------------------------EeccCCCCCCeeEEE
Q 004270 304 ---------------------PRLL----------------------------------------RFRSGHSAPPLCIRF 322 (764)
Q Consensus 304 ---------------------~~~~----------------------------------------~~~~~h~~~v~~i~~ 322 (764)
.+.+ ..+.|....|..+..
T Consensus 309 ~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl 388 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSL 388 (1012)
T ss_pred hhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCcccccccccc
Confidence 0000 000000001111111
Q ss_pred e------------------------------------------------cC--CCEEEEEeCCCcEEEEEeecccc----
Q 004270 323 Y------------------------------------------------AN--GRHILSAGQDRAFRLFSVIQDQQ---- 348 (764)
Q Consensus 323 ~------------------------------------------------~~--~~~l~s~~~dg~i~i~d~~~~~~---- 348 (764)
. || .+.-+. ....+|-.+.+..+.
T Consensus 389 ~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~~g~ 466 (1012)
T KOG1445|consen 389 APAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP--KKEEVRELDYRPYEKENGV 466 (1012)
T ss_pred CchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC--cchhhhhhcccccccccCc
Confidence 0 00 000000 001112121111100
Q ss_pred -----cccccchhhh--HHH--------hhcc--chhhh---hccCceeEeeecccccccc-------cceeEeeeCC--
Q 004270 349 -----SRELSQRHVA--KRA--------RKLK--MKEEE---LKLKPVIAFDCAEIRERDW-------CNVVTCHMDT-- 399 (764)
Q Consensus 349 -----~~~~~~~~~~--~~~--------~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-- 399 (764)
.....++... ..+ +... ...+. ..+.|...-..-..+.... +.+....+-.
T Consensus 467 ~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~ 546 (1012)
T KOG1445|consen 467 HTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPK 546 (1012)
T ss_pred cCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccccccccccccc
Confidence 0000000000 000 0000 00000 0000000000000000000 0000000000
Q ss_pred ----ceEEEEEccceeec---cee--ecCC-CCCCCCeEEEEEccCCCEEEE--EecCCcEEEEECcCCccc-ceecCcc
Q 004270 400 ----AQAYVWRLQNFVLG---EHI--LRPC-PENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISR-GSYLDMS 466 (764)
Q Consensus 400 ----~~~~~w~~~~~~~~---~~~--~~~~-~~~~~~v~~~~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~-~~~~~~~ 466 (764)
+.+.-+.--.+..+ .++ ++.. ...++... -|..+..++++ .+..|.|.+|++...-.+ .....
T Consensus 547 s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsn--Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p-- 622 (1012)
T KOG1445|consen 547 SCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESN--GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP-- 622 (1012)
T ss_pred ceeeccchheeeccCccccchhhhhhhhcccccCCCccC--ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccc--
Confidence 00000000000000 000 0000 00011111 22333445554 456789999998653222 11110
Q ss_pred ccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCC-------eeeeEecC-cceEEEEEee-cCCEEEEEeCC
Q 004270 467 ERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRD-------LKSRWEVG-CSLVKIVYHR-VNGLLATVADD 536 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~-~~i~~~~~s~-~~~~la~~~~d 536 (764)
..-....|+.+.|+| |...|+.++.||.|++|.+..+. ....+..+ ..|+++.|+| ....|++++.|
T Consensus 623 ---~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 623 ---GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred ---ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 013456799999999 66889999999999999987552 33344444 7899999999 56789999999
Q ss_pred CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccce-EEEEeeC--CceEEEEEcCCCCeE
Q 004270 537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-IDAIHVD--VSITALSLSPNMDVL 613 (764)
Q Consensus 537 ~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~--~~v~~l~~sp~g~~l 613 (764)
.+|++||+.+++....+.||++.|.+++|||||+.+|+.+.||+|+||+-.+++. +..-++. ..--.+.|.-||+++
T Consensus 700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v 779 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV 779 (1012)
T ss_pred ceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence 9999999999999999999999999999999999999999999999999887643 3332222 235678888899999
Q ss_pred EEEEeCCC---eEEEEeccc
Q 004270 614 ATAHVDQN---GVYLWVNRC 630 (764)
Q Consensus 614 at~~~d~~---~i~lW~~~~ 630 (764)
++.+-|.. .|.+|+-+.
T Consensus 780 iv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 780 IVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEecccccchhhhhhhhhhh
Confidence 99887752 366676543
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3e-28 Score=228.90 Aligned_cols=282 Identities=18% Similarity=0.331 Sum_probs=247.5
Q ss_pred CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 304 (764)
..+.++...|... .+.+|+.|..+.++|...++.+..+. ||.-.|+.+.|+|+...+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--- 294 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence 4678888888744 89999999999999999999999999 999999999999999999999999999999776553
Q ss_pred eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (764)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (764)
.......|..+|+.+..+|.|.||++++.|++..+.|++++.+....+..
T Consensus 295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------------------- 344 (506)
T KOG0289|consen 295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE----------------------------- 344 (506)
T ss_pred -CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-----------------------------
Confidence 34445689999999999999999999999999999998877654332210
Q ss_pred ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC
Q 004270 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (764)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~ 464 (764)
...-.+++.+|+|||..+.+|+.||.+++||+.++.....|.
T Consensus 345 -------------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp- 386 (506)
T KOG0289|consen 345 -------------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP- 386 (506)
T ss_pred -------------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-
Confidence 112568999999999999999999999999999999888886
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLF 542 (764)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~ 542 (764)
+|.++|..++|+.+|-+|++++.|+.|++||++..+...++... .++.++.|.+.|.+|++++.|-.|+++
T Consensus 387 -------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 387 -------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred -------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 89999999999999999999999999999999999888888776 469999999999999999877777777
Q ss_pred Ec--cCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 543 DV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 543 d~--~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
+- ..+..+..+..|.+..+.+.|..+.++++++|.|..++++.+
T Consensus 460 ~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 63 356788889999999999999999999999999999998864
No 89
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=222.20 Aligned_cols=307 Identities=18% Similarity=0.357 Sum_probs=260.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
.+|++...++++. .++++.+.||...|+.++.......+.+++.|.+.+||.+++|+++.++.+| .+.|.++.
T Consensus 125 srivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH-~GSVNsik 197 (481)
T KOG0300|consen 125 SRIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH-TGSVNSIK 197 (481)
T ss_pred chheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc-ccceeeEE
Confidence 3577777777632 3567788999999999999888889999999999999999999999999876 89999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEC------CC------------------------------c----eeeeeeecccccCe
Q 004270 232 FSSDGQPLLASGASSGVISIWNL------EK------------------------------R----RLQSVIREAHDNAI 271 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~------~~------------------------------~----~~~~~~~~~h~~~v 271 (764)
|++.+. ++++++.|++-.||.. .. + .++..+. +|.+.|
T Consensus 198 fh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV 275 (481)
T KOG0300|consen 198 FHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVV 275 (481)
T ss_pred eccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccce
Confidence 999998 9999999999999962 10 0 1233444 899999
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccc
Q 004270 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (764)
Q Consensus 272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 351 (764)
.+..|...|+.+++++.|.+..+||++++ .++..+.||....+.++-+|..+++++.+.|.++++||++..
T Consensus 276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----- 346 (481)
T KOG0300|consen 276 SACDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----- 346 (481)
T ss_pred EehhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----
Confidence 99999999999999999999999999987 688889999999999999999999999999999999997521
Q ss_pred ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (764)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (764)
|.+++
T Consensus 347 ---------------------------------------------------------------------------I~sV~ 351 (481)
T KOG0300|consen 347 ---------------------------------------------------------------------------IQSVA 351 (481)
T ss_pred ---------------------------------------------------------------------------cceee
Confidence 11111
Q ss_pred EccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-Ceee
Q 004270 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS 510 (764)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~ 510 (764)
+ | .+|...|+++.|.-+. .+++|+.|.+|++||+++. .++.
T Consensus 352 ------------------V-----------F--------QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 352 ------------------V-----------F--------QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred ------------------e-----------e--------cccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcce
Confidence 1 1 3999999999998765 5899999999999999875 5788
Q ss_pred eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE----EeecCCCCeeEEEEcCCC--cEEEEEeCCCcEEEE
Q 004270 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR----KFEGHTDRITDFCFSEDG--KWLLSSGMDGSLRIW 584 (764)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~----~~~~h~~~i~~l~~s~dg--~~l~s~s~dg~i~iw 584 (764)
++...++++.++.+..+..+|.-.++..|++||+...++.+ .-+||...|++++|..+. .-|++++.|..+.=|
T Consensus 394 TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 394 TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 99999999999999999999999999999999998765533 345899999999998654 358899999999999
Q ss_pred EcCcc
Q 004270 585 DVILA 589 (764)
Q Consensus 585 d~~~~ 589 (764)
.+...
T Consensus 474 ~in~p 478 (481)
T KOG0300|consen 474 KINTP 478 (481)
T ss_pred Eeccc
Confidence 98653
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=215.86 Aligned_cols=264 Identities=22% Similarity=0.380 Sum_probs=211.5
Q ss_pred EEEEEcCCeEEEEEccCCc------------eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004270 196 VAVGCSDGKIHVHNVRYDE------------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (764)
Q Consensus 196 la~g~~dg~i~iwd~~~~~------------~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 263 (764)
+++|+....|.=+++.-.. ++..+.. |.+++++++.+ ++ ++|+|+.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcce
Confidence 5666666655555543111 1233333 48899999986 66 9999999999999999999999888
Q ss_pred ecccccCeeEEEEecCCC--EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270 264 REAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (764)
Q Consensus 264 ~~~h~~~v~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~ 341 (764)
. .|.+.|+++.|.++-. .|++|+.||.|.+|+... +.++..+.+|.+.|+.++.+|.++..++.+.|+.++.|
T Consensus 80 l-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 80 L-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred e-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCC----eEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence 8 8999999999998765 899999999999997654 47899999999999999999999999999999999999
Q ss_pred EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (764)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (764)
++.+++....+..
T Consensus 155 NLV~Gr~a~v~~L------------------------------------------------------------------- 167 (362)
T KOG0294|consen 155 NLVRGRVAFVLNL------------------------------------------------------------------- 167 (362)
T ss_pred hhhcCccceeecc-------------------------------------------------------------------
Confidence 9876543221110
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
.+. -+.+.|+|.|.+++.++. ..|-+|
T Consensus 168 --------------------------------------------------~~~--at~v~w~~~Gd~F~v~~~-~~i~i~ 194 (362)
T KOG0294|consen 168 --------------------------------------------------KNK--ATLVSWSPQGDHFVVSGR-NKIDIY 194 (362)
T ss_pred --------------------------------------------------CCc--ceeeEEcCCCCEEEEEec-cEEEEE
Confidence 111 122778888887777666 467788
Q ss_pred ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEE--cCCCcEEEEEeCCC
Q 004270 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDG 579 (764)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~--s~dg~~l~s~s~dg 579 (764)
.+.+......+..+..+.++.|- ++..|++|.+|+.|.+||.++..+...+.+|..+|.++.+ .|++.||+|+|.||
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 88877777777666666666665 4778889999999999999999999999999999999985 56789999999999
Q ss_pred cEEEEEcCcc
Q 004270 580 SLRIWDVILA 589 (764)
Q Consensus 580 ~i~iwd~~~~ 589 (764)
.|+|||+...
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999865
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.8e-28 Score=255.97 Aligned_cols=304 Identities=18% Similarity=0.244 Sum_probs=245.8
Q ss_pred cccCeeEEEEecCCCEEEEEc--CCCcEEEEEecCCC--------CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 267 HDNAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTD--------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 267 h~~~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~--------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
++..|.++..+|++..++||+ .|+.+++|+.+.-. ..++.+.....|.+.|+|+.|+|||++|++|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 455789999999999999999 89999999865421 13456677789999999999999999999999999
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
.+.+|..........+ -...+...+.-|..
T Consensus 92 ~v~iW~~~~~~~~~~f-----------------------------------------gs~g~~~~vE~wk~--------- 121 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVF-----------------------------------------GSTGGAKNVESWKV--------- 121 (942)
T ss_pred eEEEeeecccCCcccc-----------------------------------------cccccccccceeeE---------
Confidence 9999997531000000 00001111112221
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (764)
.....+|...|..++|+|++.++++++.|++|.+||..+......+. +|.+.|.++.|+|-|+++++-+.|+
T Consensus 122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--------~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--------GHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred EEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--------cccccccceEECCccCeeeeecCCc
Confidence 11223588999999999999999999999999999999997777775 9999999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEecC-------cceEEEEEeecCCEEEEEeC----CCeEEEEEccCCeEEEEeecCCCCeeEEEE
Q 004270 497 DIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEGHTDRITDFCF 565 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~~~la~~~~----d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~ 565 (764)
+|+||++.+-...+.+..+ .....+.|||||.+|++... -..+.|.+-.+.+.-..|-||.+++..+.|
T Consensus 194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence 9999998876666666433 45788999999999998743 347899999999999999999999999999
Q ss_pred cCC-----Cc------------EEEEEeCCCcEEEEEcCccceEEEEe--eCCceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 004270 566 SED-----GK------------WLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLW 626 (764)
Q Consensus 566 s~d-----g~------------~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~l~~sp~g~~lat~~~d~~~i~lW 626 (764)
+|. .+ .+|+||.|++|.||.....+++..+. ....|..++|+|||..|..++.|| +|.+.
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG-tV~~i 352 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG-TVALI 352 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC-eEEEE
Confidence 981 11 57899999999999998888876654 355699999999999999999999 69998
Q ss_pred ecc
Q 004270 627 VNR 629 (764)
Q Consensus 627 ~~~ 629 (764)
.+.
T Consensus 353 ~Fe 355 (942)
T KOG0973|consen 353 HFE 355 (942)
T ss_pred Ecc
Confidence 864
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=8.2e-28 Score=250.63 Aligned_cols=272 Identities=18% Similarity=0.327 Sum_probs=238.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEE-EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 230 (764)
+++++++.+++|++||..++..+.. +.+|.+.|.++++..-+++|++|+.|.++++||..+|++...+..+ .+.|.++
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-~stv~~~ 297 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-TSSVRCL 297 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-CceEEEE
Confidence 4799999999999999999999988 9999999999999988889999999999999999999999999865 8889998
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec
Q 004270 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 310 (764)
...+. ++++|+.|.+|++|++.++..+..+. +|.++|.++... +.++++|+.|++|++|++.+. +++..+
T Consensus 298 ~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----~cl~sl 367 (537)
T KOG0274|consen 298 TIDPF---LLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----KCLKSL 367 (537)
T ss_pred EccCc---eEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CCEEEEEecCceEEEEEhhhc----eeeeee
Confidence 87654 78889999999999999999999998 799999999997 779999999999999999855 789999
Q ss_pred cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecc-cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (764)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (764)
.+|...|.++.+.+. ..+++|+.|++|++||+.+. ++...
T Consensus 368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-------------------------------------- 408 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT-------------------------------------- 408 (537)
T ss_pred cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh--------------------------------------
Confidence 999999999987654 79999999999999998765 22221
Q ss_pred cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
+
T Consensus 409 ------------------------------------------------------------------------l------- 409 (537)
T KOG0274|consen 409 ------------------------------------------------------------------------L------- 409 (537)
T ss_pred ------------------------------------------------------------------------h-------
Confidence 1
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~ 547 (764)
.+|..-+..+.+ .++.|++++.|++|++||..+++++..+... ..+..+++. ...+++++.|+.+++||++++
T Consensus 410 -~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 410 -QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred -cCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 266666655554 4678999999999999999999999999884 777777776 578899999999999999999
Q ss_pred eEEEEeecCC
Q 004270 548 RMVRKFEGHT 557 (764)
Q Consensus 548 ~~~~~~~~h~ 557 (764)
+..+.+-.+.
T Consensus 485 ~~~~~l~~~~ 494 (537)
T KOG0274|consen 485 TLIRTLLSTD 494 (537)
T ss_pred chhhhhhhcc
Confidence 9988774443
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-28 Score=250.82 Aligned_cols=299 Identities=17% Similarity=0.256 Sum_probs=220.4
Q ss_pred CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (764)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
.|.+.|.++.|++||+|||+||.|+.|+||.+....... ...+........+ ..... ..|...-. .. .....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~-~~~~~~~~~~~~~--~~~s~-~~p~~s~~-~~---~~~~~ 336 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR-VAEGDSSCMYFEY--NANSQ-IEPSTSSE-EK---ISSRT 336 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc-ccccccchhhhhh--hhccc-cCcccccc-cc---ccccc
Confidence 899999999999999999999999999999997743311 1110000000000 00000 00100000 00 00000
Q ss_pred e-eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccc
Q 004270 392 V-VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470 (764)
Q Consensus 392 ~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 470 (764)
. .-.+..... ..............+....+|...|..+.||.+ ++|++++.|.+|++|++.....+..|
T Consensus 337 s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-------- 406 (712)
T KOG0283|consen 337 SSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-------- 406 (712)
T ss_pred cccccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--------
Confidence 0 000000011 122222233335556666789999999999975 68999999999999999999999998
Q ss_pred ccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270 471 YAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (764)
Q Consensus 471 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~ 549 (764)
.|...|+|++|+| |.+++++|+.||.||+|++...+...-.+.+.-|++++|+|||++.++|+.+|.+++|+....+.
T Consensus 407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 7999999999999 67999999999999999999999998888999999999999999999999999999999998887
Q ss_pred EEEeec--C------CCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEeeCCc---eEEEEEcCCCCeEEEEE
Q 004270 550 VRKFEG--H------TDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAH 617 (764)
Q Consensus 550 ~~~~~~--h------~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---v~~l~~sp~g~~lat~~ 617 (764)
...+.- | ..+|+.+.|.|.. ..|++.+.|..|||+|..+-.++..|++... -....|+.||+++++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 665432 1 1279999998743 3466677899999999998899988886443 56788999999999999
Q ss_pred eCCCeEEEEeccc
Q 004270 618 VDQNGVYLWVNRC 630 (764)
Q Consensus 618 ~d~~~i~lW~~~~ 630 (764)
.|. .||+|+++.
T Consensus 566 eDs-~VYiW~~~~ 577 (712)
T KOG0283|consen 566 EDS-WVYIWKNDS 577 (712)
T ss_pred cCc-eEEEEeCCC
Confidence 888 599999854
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=230.49 Aligned_cols=284 Identities=19% Similarity=0.290 Sum_probs=242.0
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecc
Q 004270 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 268 ~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~ 346 (764)
.+.|+++.|+|..+.|++++.|+++++|.++.... ..+..+.--..||.+.+|+|+|. .+++++....+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 46899999999999999999999999999987654 35555556678999999999998 8999999999999999665
Q ss_pred cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC-CC
Q 004270 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-PT 425 (764)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~ 425 (764)
+....- +..++ ..
T Consensus 291 k~~k~~------------------------------------------------------------------~~~g~e~~ 304 (514)
T KOG2055|consen 291 KVTKLK------------------------------------------------------------------PPYGVEEK 304 (514)
T ss_pred cccccc------------------------------------------------------------------CCCCcccc
Confidence 432210 00011 24
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 004270 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 505 (764)
.+....+|++++++++.+..|.|.+....++..+..+ .-.+.|..++|+.+++.|+.++.+|.|.+||+..
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 6778899999999999999999999999999999887 4678899999999999999999999999999999
Q ss_pred CCeeeeEecCcce--EEEEEeecCCEEEEEeCCCeEEEEEccC------CeEEEEeecCCCCeeEEEEcCCCcEEEEEe-
Q 004270 506 RDLKSRWEVGCSL--VKIVYHRVNGLLATVADDLVIRLFDVVA------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG- 576 (764)
Q Consensus 506 ~~~~~~~~~~~~i--~~~~~s~~~~~la~~~~d~~i~v~d~~~------~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s- 576 (764)
..+++.+...+.+ ++++.|+++.+||+|++.|.|.|||.++ .+++..+..-...|++|+|+||++.||.+|
T Consensus 376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 9999999877555 6778889999999999999999999654 356777777778899999999999998776
Q ss_pred -CCCcEEEEEcCccceEEEEeeCCc----eEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 577 -MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 577 -~dg~i~iwd~~~~~~~~~~~~~~~----v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.+..+|+-.+++......+..... |+|++|||.|.+||.|..+++ |.+|.+.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH 512 (514)
T ss_pred ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence 567899999999888877765442 999999999999999999996 9999875
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.6e-29 Score=229.78 Aligned_cols=292 Identities=15% Similarity=0.234 Sum_probs=247.2
Q ss_pred EEEecccccceEEEEEeC---CEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCc
Q 004270 86 VATWSRHSAKVNLLLLFG---EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~~~g---~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~ 162 (764)
+..|.||.+.|.+++-.- ..++||+.||.|++||+...++ ..+++.|.+++..+++... .+++++.|++
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----~~~f~AH~G~V~Gi~v~~~----~~~tvgdDKt 130 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----IRTFKAHEGLVRGICVTQT----SFFTVGDDKT 130 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh----hheeecccCceeeEEeccc----ceEEecCCcc
Confidence 556899999999999532 5699999999999999999988 7889999999999988873 4888999999
Q ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (764)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~s 242 (764)
|+.|-+.. ..++++.+ .+.+..+.-+..+..+|+++. .|.|||..-..++.++.-+ ...|.++.|+|-...+|++
T Consensus 131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILAS 205 (433)
T ss_pred eeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC-CCceeEEecCCCcchheee
Confidence 99999754 58888877 667777877777888898886 5999999999999999877 6789999999998889999
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (764)
++.|+.|.+||++++.+++.+. -...-+.++|+|.+-.+++|+.|..+..+|+.... +.+....+|...|.++.|
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred eccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEecc
Confidence 9999999999999999888876 45567889999988889999999999999887654 567777899999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (764)
Q Consensus 323 ~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
+|.|+.+++|+.|.+|+||.+..+.....+..
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYht------------------------------------------------ 312 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT------------------------------------------------ 312 (433)
T ss_pred CCCcchhccccccceEEEeecCCCcchhhhhH------------------------------------------------
Confidence 99999999999999999999876543222111
Q ss_pred EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
.....|.++.||.|.+|+++|+.|+.|++|.....+....+
T Consensus 313 -------------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 313 -------------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred -------------------hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 01167899999999999999999999999998765554443
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.4e-29 Score=228.61 Aligned_cols=286 Identities=14% Similarity=0.213 Sum_probs=239.0
Q ss_pred EEEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270 174 LYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (764)
Q Consensus 174 ~~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw 252 (764)
+..+.+|...|.|++=+|.. ..+|+|+.||.|+|||+....+...+..+ .+.|..|++.. + .+++++.|.+|+.|
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-~G~V~Gi~v~~-~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-EGLVRGICVTQ-T--SFFTVGDDKTVKQW 134 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-cCceeeEEecc-c--ceEEecCCcceeee
Confidence 45678999999999999986 78999999999999999999999999887 89999999987 3 57888899999999
Q ss_pred ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEE
Q 004270 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILS 331 (764)
Q Consensus 253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s 331 (764)
-++. .++.++. -.+.+..+.-+..+..++|+|. .|.|||.... .++..+.--...+.++.|+| ....|++
T Consensus 135 k~~~-~p~~til--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~----~Pv~smswG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 135 KIDG-PPLHTIL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD----NPVSSMSWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred eccC-Ccceeee--ccccccccccccccccccccCc--eeeecccccC----CccceeecCCCceeEEecCCCcchheee
Confidence 9865 4666665 4567778887777888999886 4899987655 45666667778899999999 5567778
Q ss_pred EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (764)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (764)
|+.|++|.+||+++......+...
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi~~-------------------------------------------------------- 229 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVILT-------------------------------------------------------- 229 (433)
T ss_pred eccCCceEEEecccCCccceeeee--------------------------------------------------------
Confidence 889999999999988766554321
Q ss_pred ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
.....++|+|.+-.+++|..|..++.||+.........- .+|.++|.+++|+|.|+-+++
T Consensus 230 -------------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~-------~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 230 -------------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH-------KDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred -------------ccccceecCccccceeeccccccceehhhhhhcccchhh-------cccceeEEEeccCCCcchhcc
Confidence 445678999988889999999999999998755443332 489999999999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270 492 AGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~ 548 (764)
|+.|.+|+||..+.+.....+... ..|.++.||.|++++++|++|+.|++|.....+
T Consensus 290 gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 999999999999988766555444 789999999999999999999999999876443
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.5e-27 Score=226.44 Aligned_cols=285 Identities=21% Similarity=0.255 Sum_probs=237.3
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE-EE---------------e-ccCCCCEEEEEEeeCC
Q 004270 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TF---------------T-HSMRGAVTALAFSSDG 236 (764)
Q Consensus 174 ~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~-~~---------------~-~~~~~~v~~l~fs~d~ 236 (764)
...+..|.-++.+++++|+..++.+++.+|+|.-|++.+++... .+ . ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56678899999999999999999999999999999999887441 11 1 1456789999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (764)
Q Consensus 237 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (764)
+ +|++|+.|..|.||+.++.+.++.+. +|.+.|.+++|-.....|++++.|+++++|+++.. ..+.++.||...
T Consensus 215 k-ylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~ 288 (479)
T KOG0299|consen 215 K-YLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETLYGHQDG 288 (479)
T ss_pred c-EEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHHhCCccc
Confidence 9 99999999999999999999999988 99999999999988889999999999999998876 577788899999
Q ss_pred CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270 317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 317 v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
|..+....-++.+-+|+.|+++++|++....+..
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------------------------------------------- 322 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------------------------------------------- 322 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccceee----------------------------------------------
Confidence 9999998888888888899999999984332211
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc----ccc
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS----NYA 472 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~----~~~ 472 (764)
..++.+.+.|++|-.+ ..+++|+.+|.|.+|++...+++......-... ...
T Consensus 323 -----------------------frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 323 -----------------------FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred -----------------------eeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 1133477888888754 678999999999999999988877664321111 012
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CeeeeEecCcceEEEEEeecCCEEEEEe
Q 004270 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVGCSLVKIVYHRVNGLLATVA 534 (764)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~ 534 (764)
+...|++++..|...++++|+.+|.|++|-+..+ .++..+...+-|++++|+++|+.+++|.
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 3348999999999999999999999999999877 5566667779999999999999777764
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=8.3e-28 Score=252.45 Aligned_cols=291 Identities=20% Similarity=0.252 Sum_probs=236.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--cCCeEEEEEccC------------CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270 180 WGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRY------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (764)
Q Consensus 180 h~~~i~~~~~sp~~~~la~g~--~dg~i~iwd~~~------------~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~ 245 (764)
+...|.++..+|++..+|+|+ .||.++||+.+. .+.+.+... |.+.|.|+.|+|||+ +||+|++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccC
Confidence 356789999999999999999 899999998652 123333433 489999999999999 9999999
Q ss_pred CCcEEEEECCC------------------ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270 246 SGVISIWNLEK------------------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 246 dg~i~iwd~~~------------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (764)
|+.|.||.... -+....+. +|.+.|..++|+|++.+|++++.|++|.+|+..+. ..+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF----~~~ 164 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF----ELL 164 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccc----eee
Confidence 99999999772 13556666 89999999999999999999999999999987655 678
Q ss_pred EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270 308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (764)
..+.+|...|..+.|.|-|++|++-+.|++|++|++.+-.....+...-
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf------------------------------- 213 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF------------------------------- 213 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch-------------------------------
Confidence 8889999999999999999999999999999999976533332222110
Q ss_pred cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec----CCcEEEEECcCCcccceec
Q 004270 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWIERFNLQSGISRGSYL 463 (764)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----~g~i~i~~~~~~~~~~~~~ 463 (764)
. ..........+.|||||++|+++.. ...+.+.+-.+...-..+.
T Consensus 214 ------------------------------~-~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv 262 (942)
T KOG0973|consen 214 ------------------------------E-ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV 262 (942)
T ss_pred ------------------------------h-hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee
Confidence 0 0012366788999999999998744 2377888876666555554
Q ss_pred CccccccccccCcEEEEEECCC-----CC------------EEEEEeCCCeEEEEECCCCCeeeeEec--CcceEEEEEe
Q 004270 464 DMSERSNYAHNGEVVGVACDST-----NT------------LMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH 524 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~-----~~------------~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~i~~~~~s 524 (764)
+|.+++.+++|+|. .+ .+|+|+.|++|-||.....+++..... ...|..++|+
T Consensus 263 --------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 263 --------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS 334 (942)
T ss_pred --------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc
Confidence 99999999999882 12 678999999999999987777766543 3899999999
Q ss_pred ecCCEEEEEeCCCeEEEEEccCC
Q 004270 525 RVNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 525 ~~~~~la~~~~d~~i~v~d~~~~ 547 (764)
|||..|.+++.||+|.++..+..
T Consensus 335 pdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCCeEEEEecCCeEEEEEcchH
Confidence 99999999999999999998754
No 99
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.1e-28 Score=211.14 Aligned_cols=259 Identities=15% Similarity=0.278 Sum_probs=216.8
Q ss_pred eEEEEec--CceEEEe--cccccceEEEEEe---CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCC
Q 004270 76 HIAVVKR--AHQVATW--SRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD 148 (764)
Q Consensus 76 ~i~vw~~--~~~~~~~--~~h~~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 148 (764)
.+.+-+. ++.+... -.-.+.+..+++. .+.+++++.||++++||+..... |+..++.|...+.++-+++.
T Consensus 39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccc
Confidence 4777775 3334442 2345678888873 67899999999999999544433 67788889999999988887
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCE
Q 004270 149 TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV 227 (764)
Q Consensus 149 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v 227 (764)
.. ..+++++-|++|++|+...++-+.+|.+|...|...+|+|. .+++++++.||.+++||++.......+..| ...+
T Consensus 116 ~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Ei 193 (311)
T KOG0277|consen 116 RR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEI 193 (311)
T ss_pred cc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-ccee
Confidence 75 56777899999999999999999999999999999999995 679999999999999999876555556665 6899
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCce
Q 004270 228 TALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPR 305 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~ 305 (764)
.++.|+.-..++|+||+.|+.|+.||+++-+ ++..+. +|.-.|..+.|+|.. ..|++++.|-++++||...++.
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds--- 269 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS--- 269 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccccchh---
Confidence 9999999888899999999999999998864 566665 999999999999965 5899999999999999876653
Q ss_pred eeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEe
Q 004270 306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~ 343 (764)
.+.....|+.-+..+.|++ ++.++++++-|+.+.+|+.
T Consensus 270 ~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4555568999999999998 7889999999999999983
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.6e-27 Score=211.67 Aligned_cols=278 Identities=19% Similarity=0.298 Sum_probs=222.7
Q ss_pred EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC-ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEE
Q 004270 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295 (764)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw 295 (764)
..+.......|.+|+|||....++++|+.||+|++|+++. |.........|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 3344555788999999996666888999999999999987 455555555799999999999999999999999999999
Q ss_pred EecCCCCCceeeEeccCCCCCCeeEEEecCCC--EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
|+.++ .......|.++|.++.|-+... .|++|+.|.+|+.||.+.......+..+
T Consensus 100 DL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP------------------ 156 (347)
T KOG0647|consen 100 DLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP------------------ 156 (347)
T ss_pred EccCC-----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc------------------
Confidence 99876 3444568999999999998554 8999999999999999876555443211
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
..+.++ +--...+++++.+..|.+|++
T Consensus 157 ---------------------------------------------------eRvYa~--Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 157 ---------------------------------------------------ERVYAA--DVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred ---------------------------------------------------ceeeeh--hccCceeEEEecCCcEEEEEc
Confidence 222222 223467899999999999999
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CeeeeEecC----------cceEEE
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR--DLKSRWEVG----------CSLVKI 521 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~----------~~i~~~ 521 (764)
+.+........ ..-+-.+++++..++.+..+.|+-+|.+.+..+..+ +.-..++.| ..|.++
T Consensus 184 ~n~~te~k~~~------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 184 ENPPTEFKRIE------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred CCCcchhhhhc------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 87654432211 234567899999999988899999999999999876 333333333 357889
Q ss_pred EEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 522 ~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s 576 (764)
+|+|.-..|++++.||++.+||-+....+...+.|..+|++.+|+.+|.++|.+.
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 9999999999999999999999998888888899999999999999999988653
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=222.82 Aligned_cols=279 Identities=17% Similarity=0.292 Sum_probs=236.1
Q ss_pred EEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec
Q 004270 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH 221 (764)
Q Consensus 142 ~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~ 221 (764)
++...|.. +++++|+.|..+.++|..+++.+..++||...|+.+.++|+...+++++.|-.|+||.............
T Consensus 224 ald~~~s~--~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~ 301 (506)
T KOG0289|consen 224 ALDIIPSS--SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRP 301 (506)
T ss_pred EEeecCCC--CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccc
Confidence 33345554 7899999999999999999999999999999999999999999999999999999999987776555554
Q ss_pred cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec-ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
|.++|+.+..+|.|. +|++++.||+..+.|++++..+..... ...-.+++.+|+|||.+|.+|..|+.+++||+..+
T Consensus 302 -h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 302 -HEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred -ccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 489999999999999 888999999999999999998887762 12245899999999999999999999999999877
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
. .+..+.+|.++|..++|+.+|-+|++++.|+.|++||++..+....+..
T Consensus 380 ~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l-------------------------- 429 (506)
T KOG0289|consen 380 T----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL-------------------------- 429 (506)
T ss_pred c----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--------------------------
Confidence 3 5667789999999999999999999999999999999987654333221
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC--Ccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS--GIS 458 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~--~~~ 458 (764)
.....+.++.|.+.|.++++++.+=.|+++.-.+ ...
T Consensus 430 -----------------------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~ 468 (506)
T KOG0289|consen 430 -----------------------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTE 468 (506)
T ss_pred -----------------------------------------cccccceeEEEcCCCCeEEeecceeEEEEEeccccccee
Confidence 1124789999999999999998877777777443 333
Q ss_pred cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
...+ ..|.+..+++.|....+++++++.|..++++.+
T Consensus 469 ~~~~--------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 469 IKEL--------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eehh--------hhcccccceeeecccceEEeeccchhheEEeec
Confidence 3333 378889999999999999999999999988764
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=242.41 Aligned_cols=352 Identities=17% Similarity=0.252 Sum_probs=271.9
Q ss_pred eCCEEEEEecCCcEEEEEccCCccc--ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEE
Q 004270 102 FGEHILSIDIDGNMFIWAFKGIEEN--LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK--KKLYEF 177 (764)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 177 (764)
.+++|+|++.||.|++|++....-. ...+..++.|...+..++..-.+ +.++++|.|-+|++|+...+ -+..++
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--KTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC--CceEEecCCceEEEeecccCcchhHhhh
Confidence 5788999999999999998654331 12256777888888888877777 68999999999999999877 577888
Q ss_pred cCCCCCeEEEEE-cCCCCEEEEEEcCCeEEEEEccCC--ceEEEE--------eccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270 178 KGWGSSISSCVS-SPALDVVAVGCSDGKIHVHNVRYD--EELVTF--------THSMRGAVTALAFSSDGQPLLASGASS 246 (764)
Q Consensus 178 ~~h~~~i~~~~~-sp~~~~la~g~~dg~i~iwd~~~~--~~~~~~--------~~~~~~~v~~l~fs~d~~~~l~sg~~d 246 (764)
..|..-|.|+++ .++..++|+|+-|+.|.+||+.++ ..+.++ ..++..+|++++..+.|. ++++|+..
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgte 192 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTE 192 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcc
Confidence 999999999999 888899999999999999999987 233332 224577999999999997 99999999
Q ss_pred CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (764)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (764)
+.|++||.++++.+..++ +|...|..+..++||..++++|.||+|++||+... +++.++..|...|.++..+|+=
T Consensus 193 k~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred cceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc
Confidence 999999999999999999 99999999999999999999999999999998766 7888889999999999999999
Q ss_pred CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (764)
Q Consensus 327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (764)
.++++|+.||.|..-|+++......+-
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlic----------------------------------------------------- 294 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLIC----------------------------------------------------- 294 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEee-----------------------------------------------------
Confidence 999999999999998887652211110
Q ss_pred ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC
Q 004270 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (764)
....++..+..+...+-+-+++.|+.|..|...-.. ++++.+
T Consensus 295 ---------------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-----------------------~l~~s~ 336 (735)
T KOG0308|consen 295 ---------------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-----------------------ALSVSG 336 (735)
T ss_pred ---------------cCCCchhhhhhccccCCceeeeccccceecCCcccc-----------------------ccccCC
Confidence 011334444444444445677888888888654221 233333
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee
Q 004270 487 TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (764)
Q Consensus 487 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~ 554 (764)
++.. -+.|......+... .+-..+++..+|...++-.|.+.+++-...|.+.+||+-..+.+..|.
T Consensus 337 ~~~~-~~T~~~~~~~~~~~-tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 337 DLDF-FSTDSNNHSCDLTN-TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred CCCc-ccccCCCccccccC-CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 3333 22223333333211 333445556677777888889999999999999999998776666554
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=227.71 Aligned_cols=301 Identities=10% Similarity=0.160 Sum_probs=232.1
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc----eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~ 248 (764)
.--.+++|...|+++++.|.|..+++|+.|..|++||+.... ..+.+.......|.+++|++.|. .+++.+....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aq 237 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQ 237 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcc
Confidence 345678899999999999999999999999999999987432 23333333356899999999998 5555555778
Q ss_pred EEEEECCCceeeeeee-----------cccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEec--cCCC
Q 004270 249 ISIWNLEKRRLQSVIR-----------EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHS 314 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~-----------~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~h~ 314 (764)
.+|+|-.........+ .+|...+++.+|+|..+ .+++++.||++|+|+++........+... .+..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 9999966554443332 38999999999999764 89999999999999998776544444333 3455
Q ss_pred CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (764)
-+++.++|++||+.|++|..||+|.+|+.........+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~------------------------------------------ 355 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM------------------------------------------ 355 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccce------------------------------------------
Confidence 68899999999999999999999999997432211110
Q ss_pred eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc-eecCccccccccc
Q 004270 395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG-SYLDMSERSNYAH 473 (764)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~h 473 (764)
...........|+++.||++|++|++-+.|+++++||++..+... .... ...
T Consensus 356 ---------------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg------L~t 408 (641)
T KOG0772|consen 356 ---------------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG------LPT 408 (641)
T ss_pred ---------------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC------CCc
Confidence 011111122589999999999999999999999999998654432 2211 123
Q ss_pred cCcEEEEEECCCCCEEEEEe------CCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270 474 NGEVVGVACDSTNTLMISAG------YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 474 ~~~v~~l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d 543 (764)
...-+.++|+|+.+++++|. ..|++.+||..+.+.+..+... ..|..+.|+|.=+.+.+|+.||.++||=
T Consensus 409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 34557889999999999986 3578999999999988888776 7899999999999999999999999984
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.6e-27 Score=210.45 Aligned_cols=280 Identities=18% Similarity=0.234 Sum_probs=216.4
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 179 GWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 179 ~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
...+.|.+++||| ...+++.|+.||+||+|+++. |..+.+....+.++|.+++|+.||. .+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC
Confidence 3478899999999 556677899999999999986 5666555566789999999999998 899999999999999999
Q ss_pred ceeeeeeecccccCeeEEEEecCCC--EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC
Q 004270 257 RRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334 (764)
Q Consensus 257 ~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~ 334 (764)
++....- .|.++|..+.|.+... .|+|||.|.+|+.||.+... .+..+ .-.+.+.++.. ....++.+..
T Consensus 104 ~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----pv~t~-~LPeRvYa~Dv--~~pm~vVata 174 (347)
T KOG0647|consen 104 GQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----PVATL-QLPERVYAADV--LYPMAVVATA 174 (347)
T ss_pred CCeeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCC----eeeee-eccceeeehhc--cCceeEEEec
Confidence 9665554 6999999999998766 89999999999999887553 23222 22344555443 3457888888
Q ss_pred CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecc
Q 004270 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (764)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 414 (764)
++.|.+|+++.+........
T Consensus 175 ~r~i~vynL~n~~te~k~~~------------------------------------------------------------ 194 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIE------------------------------------------------------------ 194 (347)
T ss_pred CCcEEEEEcCCCcchhhhhc------------------------------------------------------------
Confidence 99999999976543222110
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc---cccCcEEEEEECCCCCEEEE
Q 004270 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY---AHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s 491 (764)
....-.+++++.-++....++|+-+|.+.+..+..+.....|.-...+... +.-..|.+|+|+|....|+|
T Consensus 195 ------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 195 ------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred ------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 012367899999999998899999999999999887544444322111111 11246889999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEe
Q 004270 492 AGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVA 534 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~ 534 (764)
+|.||++.+||-+....+.+.+ +..+|++.+|+.+|.++|.+.
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 9999999999988777777654 458999999999999988764
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=226.40 Aligned_cols=293 Identities=19% Similarity=0.313 Sum_probs=232.8
Q ss_pred CcEEEEeCCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 161 GSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h-~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.++.+||+++|....++++- ...-.++..- .+.+++++. ....+.+|.+...........- +++|.+++-+|+|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~-Pg~v~al~s~n~G~- 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL-PGPVHALASSNLGY- 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc-ccceeeeecCCCce-
Confidence 45999999999999999874 1111112111 224566554 4468999998765554422222 68999999999998
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC-----CCCCceeeEeccCC
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----TDGDPRLLRFRSGH 313 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~~~~~h 313 (764)
+|+.|+..|.|++|.+.+|.++..+. +|-..|+++.|+.|+.+++|||.||.|.+|.+-. .+.....+..+..|
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 88888899999999999999999997 9999999999999999999999999999998742 23355678888999
Q ss_pred CCCCeeEEEecC--CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270 314 SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (764)
Q Consensus 314 ~~~v~~i~~~~~--~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
.-+|+.+...+. ..+++|++.|.++++||+..+.....+.
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------------------------------------- 215 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-------------------------------------- 215 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------------------------------------
Confidence 999999988764 4689999999999999998775443321
Q ss_pred eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc--------ceec
Q 004270 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR--------GSYL 463 (764)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~--------~~~~ 463 (764)
.+..+.+++++|-++.+++|+++|.|.+.++...... ....
T Consensus 216 -------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 216 -------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred -------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 2378999999999999999999999999887554311 1122
Q ss_pred CccccccccccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeec
Q 004270 464 DMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRV 526 (764)
Q Consensus 464 ~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~ 526 (764)
........+|.+ .|+|++++-||.+|++|+.||.|.|||+.+.++++++. ..++|+.+.+.|-
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 222234468888 99999999999999999999999999999999999998 5689999888663
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=238.45 Aligned_cols=341 Identities=19% Similarity=0.276 Sum_probs=272.5
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCce------EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc--eeeee
Q 004270 191 PALDVVAVGCSDGKIHVHNVRYDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSV 262 (764)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~~~~ 262 (764)
|.+++|.+|+.||.|++|+...... +.++.. |..+|..+....+|+ .|++++.|-+|++|+...+ -+..+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence 4567899999999999999875543 444444 488999999999998 7999999999999999877 56677
Q ss_pred eecccccCeeEEEE-ecCCCEEEEEcCCCcEEEEEecCCCC------CceeeEecc-CCCCCCeeEEEecCCCEEEEEeC
Q 004270 263 IREAHDNAIISLHF-FANEPVLMSASADNSIKMWIFDTTDG------DPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQ 334 (764)
Q Consensus 263 ~~~~h~~~v~~l~~-~~~~~~l~s~~~d~~i~vw~~~~~~~------~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~ 334 (764)
+. .|...|.++++ .++...+++||.|+.|.+||++.... .......+. |+..+|.+++..+.|..+++|+.
T Consensus 113 ir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 113 IR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 77 89999999999 78888999999999999999986632 111122233 89999999999999999999999
Q ss_pred CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecc
Q 004270 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (764)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 414 (764)
.+.+++||.++......+
T Consensus 192 ek~lr~wDprt~~kimkL-------------------------------------------------------------- 209 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKL-------------------------------------------------------------- 209 (735)
T ss_pred ccceEEeccccccceeee--------------------------------------------------------------
Confidence 999999998876544333
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC
Q 004270 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (764)
Q Consensus 415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 494 (764)
.+|...|+++.+++||+.++++++||+|++||+.....+.++. .|...|.++..+|+-+.+++|+.
T Consensus 210 ------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--------vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 210 ------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--------VHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred ------eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--------eccCceEEEeeCCCcceEEecCC
Confidence 2677999999999999999999999999999999999999886 89999999999999999999999
Q ss_pred CCeEEEEECCC-CCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270 495 HGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 573 (764)
Q Consensus 495 dg~v~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~ 573 (764)
||.|..-|+.+ .+....++...++..+..+...+-+-+++.|+.|+-|...-. .++++.|++..
T Consensus 276 d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~---------------~~l~~s~~~~~ 340 (735)
T KOG0308|consen 276 DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD---------------IALSVSGDLDF 340 (735)
T ss_pred CCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc---------------cccccCCCCCc
Confidence 99999999998 455666677789999988876666677888888888854321 14555555554
Q ss_pred EEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 574 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
-+.|....+.+.. ..+-..+++..++..-++-.|.+.++|-...|+ +.+||+
T Consensus 341 -~~T~~~~~~~~~~-~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gn-v~lwDI 392 (735)
T KOG0308|consen 341 -FSTDSNNHSCDLT-NTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGN-VALWDI 392 (735)
T ss_pred -ccccCCCcccccc-CCCceeccCchhhhhhhhhcCcceEeeecCCCC-EEEEEe
Confidence 2334444444432 133444555556777777788888888888885 889987
No 107
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=8.4e-26 Score=235.79 Aligned_cols=164 Identities=18% Similarity=0.294 Sum_probs=138.9
Q ss_pred EEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCc-------eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270 176 EFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (764)
Q Consensus 176 ~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg 247 (764)
.+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++. .+..+.. |...|.+++|+|++..+|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 4789999999999999 88999999999999999998653 3455554 4889999999998755999999999
Q ss_pred cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC-CeeEEEecCC
Q 004270 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANG 326 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~ 326 (764)
.|+|||+++++....+. +|...|.+++|+|++.+|++++.|+.|++||++.. ..+..+.+|... +..+.|.+++
T Consensus 149 tVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred EEEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCC
Confidence 99999999999888887 89999999999999999999999999999998765 456666788765 3467788887
Q ss_pred CEEEEEe----CCCcEEEEEeec
Q 004270 327 RHILSAG----QDRAFRLFSVIQ 345 (764)
Q Consensus 327 ~~l~s~~----~dg~i~i~d~~~ 345 (764)
..+++++ .|+.|++||+++
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCC
Confidence 7777765 367888888653
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.9e-26 Score=208.20 Aligned_cols=274 Identities=15% Similarity=0.251 Sum_probs=222.8
Q ss_pred EEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (764)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~ 297 (764)
.+.......|+++.|+|.+. .|++++.||.+++||.....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus 7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence 34445567899999998888 66667799999999999987777776 999999999987 457999999999999999
Q ss_pred cCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (764)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (764)
++... ..+..|..++.|+.+++....+++||.|++|++||.+.......+.+
T Consensus 83 n~~~~-----~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~----------------------- 134 (323)
T KOG1036|consen 83 NTGNE-----DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ----------------------- 134 (323)
T ss_pred cCCcc-----eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------------------
Confidence 88743 33457999999999999888999999999999999876333222211
Q ss_pred EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (764)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~ 457 (764)
...|.++ +-.|+.|++|+.+..+.+||+++..
T Consensus 135 ----------------------------------------------~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 135 ----------------------------------------------GKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ----------------------------------------------CceEEEE--eccCCEEEEeecCceEEEEEccccc
Confidence 1334444 4458999999999999999998866
Q ss_pred ccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CeeeeEecC----------cceEEEEE
Q 004270 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG----------CSLVKIVY 523 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~----------~~i~~~~~ 523 (764)
...+.. ...-+-.++++++-|++.-.+.++-||.|.+=.++.. +....++.| .+|.+++|
T Consensus 167 ~~~q~r------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 167 EPFQRR------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred chhhhc------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 544222 1255678999999999888999999999988777655 333333332 68999999
Q ss_pred eecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 524 s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
+|-.+.+|+|+.||.|.+||+.+.+.+..+..-...|.+++|+.||..||.++.
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999999999999888888999999999999998873
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.6e-26 Score=219.41 Aligned_cols=285 Identities=17% Similarity=0.284 Sum_probs=230.6
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee-eeee----------------cccccCeeEEEEecCCCEE
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIR----------------EAHDNAIISLHFFANEPVL 283 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~----------------~~h~~~v~~l~~~~~~~~l 283 (764)
..|.-++.+++++|+++ +.++++.+|+|.-|++.+++.. ..+. ..|...+.+++.++|+++|
T Consensus 139 ~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 34578999999999999 8999999999999999888633 1111 1688899999999999999
Q ss_pred EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (764)
++|+.|+.|.||+.++. ..+..+.+|.+.|.+++|-.....+++++.|+++++|++........
T Consensus 218 atgg~d~~v~Iw~~~t~----ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet------------ 281 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTL----EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET------------ 281 (479)
T ss_pred EecCCCceEEEecCccc----chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH------------
Confidence 99999999999999887 45666889999999999998888999999999999999754322111
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
T Consensus 282 -------------------------------------------------------------------------------- 281 (479)
T KOG0299|consen 282 -------------------------------------------------------------------------------- 281 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEE
Q 004270 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~ 523 (764)
+.+|.+.|.+|.....++.+-.|+.|+++++|++.....+.-..+.+.+.|++|
T Consensus 282 --------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 282 --------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAF 335 (479)
T ss_pred --------------------------HhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEE
Confidence 148999999999888888777888999999999965555444455578899988
Q ss_pred eecCCEEEEEeCCCeEEEEEccCCeEEEEeec-C-----------CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc--
Q 004270 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG-H-----------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA-- 589 (764)
Q Consensus 524 s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-h-----------~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~-- 589 (764)
-. ...+++|+++|.|.+|++.+.+++.+..- | ...|++++..|...++|+|+.+|.|++|-+.+|
T Consensus 336 In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 336 IN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 75 56789999999999999999988776541 2 227999999999999999999999999999988
Q ss_pred --ceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeE-EEEecc
Q 004270 590 --RQIDAIHVDVSITALSLSPNMDVLATAHVDQNGV-YLWVNR 629 (764)
Q Consensus 590 --~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i-~lW~~~ 629 (764)
.++..+....-|++++|+++|.+++++......+ +-|.++
T Consensus 415 ~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 415 AINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred ccceeeecccccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 4555566666699999999999777665443224 334443
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.3e-25 Score=190.36 Aligned_cols=297 Identities=19% Similarity=0.294 Sum_probs=231.1
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc------CC--------ceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YD--------EELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~------~~--------~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.+..+.. ...|.+++|+|.|.+.|+|+...+.+|-... .+ ..+..-..+|.+.|.|.+|+|+|+
T Consensus 25 ~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge- 102 (350)
T KOG0641|consen 25 AINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE- 102 (350)
T ss_pred EEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-
Confidence 3444444 7789999999999999999999998886432 11 123334467799999999999999
Q ss_pred EEEEEeCCCcEEEEECCCceee-----eeeecccccCeeEEEEecC----CCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270 239 LLASGASSGVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~-----~~~~~~h~~~v~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (764)
++++|+.|.+|++.-.+...+. ..+. -|.+.|..++|..+ +.+|++++. |..++|..+.+.+ ..+..
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g--~~~~a 178 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDCGRG--QGFHA 178 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeecCCC--Cccee
Confidence 9999999999999876544221 1233 68999999999754 446676654 4455565554443 45677
Q ss_pred ccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270 310 RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (764)
+.||.+.|.++ ++-+|-.+++|+.|.+|++||++-+.....+....
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~--------------------------------- 224 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF--------------------------------- 224 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc---------------------------------
Confidence 78999998876 34478899999999999999998766555443210
Q ss_pred cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
....-..+.|.++++.|.|+++++|-.|....+||++.+..++.+-
T Consensus 225 ----------------------------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~------ 270 (350)
T KOG0641|consen 225 ----------------------------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH------ 270 (350)
T ss_pred ----------------------------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC------
Confidence 0000123779999999999999999999999999999999999985
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~ 544 (764)
.|...|.++.|+|...++++++.|..|++-|+... ..+..-++...+..+.|+|..-.+++.+.|.++.+|-+
T Consensus 271 --phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 271 --PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred --CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 89999999999999999999999999999998743 12223345588889999999999999999999999976
Q ss_pred c
Q 004270 545 V 545 (764)
Q Consensus 545 ~ 545 (764)
.
T Consensus 349 ~ 349 (350)
T KOG0641|consen 349 N 349 (350)
T ss_pred C
Confidence 4
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.5e-27 Score=210.54 Aligned_cols=246 Identities=15% Similarity=0.231 Sum_probs=212.3
Q ss_pred EEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 87 ATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 87 ~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
..+..|.++|++++.+|.++|||+.|-+|+|||+..... +..+..|.+.+..+.|.++...+.|++|+.||.|.+|
T Consensus 37 F~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccceeEEEecceeEeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 347889999999999999999999999999999998887 6777778888888889888865699999999999999
Q ss_pred eCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270 167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (764)
Q Consensus 167 d~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d 246 (764)
+....+++.++++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-..+... ...+.+.|+|.|. .++.+..
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd-~F~v~~~- 188 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGD-HFVVSGR- 188 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCCC-EEEEEec-
Confidence 99999999999999999999999999999999999999999999999987777664 3345599999999 5555554
Q ss_pred CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe--c
Q 004270 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY--A 324 (764)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~--~ 324 (764)
..|-+|.+++.+....+. ....+.++.|. ++..|++|+.|+.|++||-+.. .++..+.+|...|..+.+. |
T Consensus 189 ~~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD----TPLTEFLAHENRVKDIASYTNP 261 (362)
T ss_pred cEEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCC----ccceeeecchhheeeeEEEecC
Confidence 469999999888777765 33557777776 4558999999999999987763 5677788999999999965 3
Q ss_pred CCCEEEEEeCCCcEEEEEeeccc
Q 004270 325 NGRHILSAGQDRAFRLFSVIQDQ 347 (764)
Q Consensus 325 ~~~~l~s~~~dg~i~i~d~~~~~ 347 (764)
++.+|++++.||.|++||+....
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CceEEEEeccCceEEEEEccccc
Confidence 67899999999999999998763
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.8e-27 Score=227.49 Aligned_cols=285 Identities=13% Similarity=0.238 Sum_probs=243.4
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc--CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
.|..-|.++..+...+.++||+. |.|+|||+...... ..+..+. ....-+.++...|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-CccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 58889999999999999999885 77999999765322 2222221 23567889999999999999999999999999
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
........... ...
T Consensus 495 AapTprikael------------------------------------------------------------------tss 508 (705)
T KOG0639|consen 495 AAPTPRIKAEL------------------------------------------------------------------TSS 508 (705)
T ss_pred cCCCcchhhhc------------------------------------------------------------------CCc
Confidence 76543221100 001
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
.....+++++||.+..+++..||.|.+||+.+...++.|. +|.+.+.||.++++|..|.||+-|.+||.||+
T Consensus 509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 1345678999999999999999999999999999999986 99999999999999999999999999999999
Q ss_pred CCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEE
Q 004270 504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (764)
Q Consensus 504 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i 583 (764)
+++..+...+..+.|.++.++|.+.+||+|..++.+.|..... .....+.-|...|.++.|++.|+|+++.+.|..+..
T Consensus 581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence 9999999999999999999999999999999999999988754 344566779999999999999999999999999999
Q ss_pred EEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 584 wd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
|..+-|..+...+..++|+++.+|-|.++++|++.|.+ ..+|.+
T Consensus 660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkk-ATVYeV 703 (705)
T KOG0639|consen 660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKK-ATVYEV 703 (705)
T ss_pred ccCccccceeeccccCcceeeeeccCceEEEecCCCcc-eEEEEE
Confidence 99999999998888889999999999999999999975 666653
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.8e-27 Score=232.33 Aligned_cols=241 Identities=21% Similarity=0.330 Sum_probs=205.4
Q ss_pred EEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccE-EEEeCCCCCCEEEEEeCCCcE
Q 004270 86 VATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPT-CIMHPDTYLNKVIVGSQEGSL 163 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~l~~~~~dg~i 163 (764)
-+.+.||+..|..++. ++..++++|.||++++|+-..++... ...+..+.+++.. .++.+.. ...+++|+.|+.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~--~~~~~~~~g~i~~~i~y~e~~-~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE--THAFEGPKGFIANSICYAESD-KGRLVVGGMDTTI 83 (745)
T ss_pred EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCccccc--ceecccCcceeeccceecccc-CcceEeecccceE
Confidence 4558999999999887 77789999999999999987766521 2334556666665 5555532 1469999999999
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg 243 (764)
.+|...+..+++.+++|.+.|.|+....++. +++|+.|.++++|-. ++....+.. |+..|.++++.|++ .++||
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTG 157 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEec
Confidence 9999999999999999999999999888876 999999999999975 555666655 48999999999988 48899
Q ss_pred eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
+.|.+|++|.- ++.+.++. +|...|+++++.+++ .+++++.||.|+.|+++. ..+....+|..-+.++...
T Consensus 158 saDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred cCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEec
Confidence 99999999984 88889998 899999999999886 588999999999998843 4677888999999999988
Q ss_pred cCCCEEEEEeCCCcEEEEEee
Q 004270 324 ANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 324 ~~~~~l~s~~~dg~i~i~d~~ 344 (764)
.++..++++++|+++++|+..
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CCCCeEEEecCCceEEEeecC
Confidence 888899999999999999965
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=207.06 Aligned_cols=292 Identities=20% Similarity=0.265 Sum_probs=215.0
Q ss_pred cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee--eeee-cccccCeeEEEEecCCC-EEEEEcCCCcEEEEEe
Q 004270 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--SVIR-EAHDNAIISLHFFANEP-VLMSASADNSIKMWIF 297 (764)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~-~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~ 297 (764)
+|.+.|++++|+.||+ .|++++.|+.|++|+++..... ..++ .-..+-.+.+.|.||.+ .++++-..+++++|.+
T Consensus 84 gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 4588999999999999 9999999999999999764211 1111 01123468899999987 4455556778999987
Q ss_pred cCCCCCce--------eeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270 298 DTTDGDPR--------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 369 (764)
Q Consensus 298 ~~~~~~~~--------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (764)
.......- -+.....|..++..+-...++.+|.+++.|..|.+|++. ++....+..
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt--------------- 226 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT--------------- 226 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc---------------
Confidence 65432111 112334577788888888889999999999999999987 443333221
Q ss_pred hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~ 449 (764)
....-...++||||+++++++-.-.|.
T Consensus 227 -----------------------------------------------------nq~~n~~aavSP~GRFia~~gFTpDVk 253 (420)
T KOG2096|consen 227 -----------------------------------------------------NQSSNYDAAVSPDGRFIAVSGFTPDVK 253 (420)
T ss_pred -----------------------------------------------------ccccccceeeCCCCcEEEEecCCCCce
Confidence 224456678999999999999999999
Q ss_pred EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------CeeeeEe-----cCcc
Q 004270 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLKSRWE-----VGCS 517 (764)
Q Consensus 450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~-----~~~~ 517 (764)
+|..--++.-..-.....-.+.+|...|..++|+++.+.+++.+.||++++||++-. +.+++.. ..+.
T Consensus 254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 998732221110001111134699999999999999999999999999999997521 2222221 1244
Q ss_pred eEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 518 i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
...+.++|+|+.||++. ...+++|..++++....++ .|...|++++|+++|++++|++ |..+++..
T Consensus 334 p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 55899999999998865 4589999999998877775 5899999999999999999997 77788876
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.7e-27 Score=210.84 Aligned_cols=296 Identities=13% Similarity=0.245 Sum_probs=244.8
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
++.+.+|...+..++..... ..+.+++.|.+-+||.+++|+++.++.||.+.|+++.|++.+.++++++.|++-+||.
T Consensus 141 vre~~GHkDGiW~Vaa~~tq--pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQ--PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhhcccccceeeehhhcCC--cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 56677788888777765555 6789999999999999999999999999999999999999999999999999999996
Q ss_pred cc------C------------------------------C----ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 210 VR------Y------------------------------D----EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 210 ~~------~------------------------------~----~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
.. . + -++..+.. |.+.|.+..|...|+ .+++++.|.+-
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~-Q~vTaSWDRTA 296 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQ-QMVTASWDRTA 296 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcc-eeeeeeccccc
Confidence 21 0 0 12344444 478899999999998 89999999999
Q ss_pred EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (764)
Q Consensus 250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (764)
.+||++++.++..+. +|....+.++-+|..+++++++.|.+.++||+... ...+..+.||...|+++.|..+. .+
T Consensus 297 nlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---I~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 297 NLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---IQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred eeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhh---cceeeeecccccceeEEEEecCC-ce
Confidence 999999999999998 99999999999999999999999999999999743 24567788999999999999765 68
Q ss_pred EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
++|+.|.++++||+++.+.... .+
T Consensus 372 VSgSDDrTvKvWdLrNMRsplA--------------------------TI------------------------------ 395 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLA--------------------------TI------------------------------ 395 (481)
T ss_pred eecCCCceEEEeeeccccCcce--------------------------ee------------------------------
Confidence 9999999999999976532110 00
Q ss_pred eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC--C
Q 004270 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--T 487 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~ 487 (764)
...+++..++++..+..+++-..+..|++||+......... .....+|...|+|.+|..+. .
T Consensus 396 ------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP----rtsRqgHrRMV~c~AW~eehp~c 459 (481)
T KOG0300|consen 396 ------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP----RTSRQGHRRMVTCCAWLEEHPAC 459 (481)
T ss_pred ------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC----cccccccceeeeeeeccccCccc
Confidence 11277888999999999999999999999999865443321 11225899999999997543 3
Q ss_pred EEEEEeCCCeEEEEECCCC
Q 004270 488 LMISAGYHGDIKVWDFKGR 506 (764)
Q Consensus 488 ~l~s~~~dg~v~iwd~~~~ 506 (764)
-|+++|.|..+.-|.+...
T Consensus 460 nLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 460 NLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccccceeeeeEeccc
Confidence 5889999999999998754
No 116
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=234.77 Aligned_cols=250 Identities=15% Similarity=0.203 Sum_probs=193.7
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCc--------eEEEEeccCCCCE
Q 004270 157 GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE--------ELVTFTHSMRGAV 227 (764)
Q Consensus 157 ~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v 227 (764)
|+..+.+++|+......+..+.+|.+.|.+++|+|+ +++||+|+.||.|+|||+.++. .+..+.. |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 556788999998888889999999999999999997 7899999999999999998643 2233443 47899
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (764)
.+++|+|++..+|++++.|+.|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||++.. ..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIA 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEE
Confidence 9999999998677899999999999999998777665 6678999999999999999999999999998765 456
Q ss_pred EeccCCCCCCeeEE-----EecCCCEEEEEeCCC----cEEEEEeecccc-cccccchhhhHHHhhccchhhhhccCcee
Q 004270 308 RFRSGHSAPPLCIR-----FYANGRHILSAGQDR----AFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVI 377 (764)
Q Consensus 308 ~~~~~h~~~v~~i~-----~~~~~~~l~s~~~dg----~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (764)
..+.+|.+.+.... |++++.+|++++.|+ .|++||++.... .....
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------------------------ 258 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS------------------------ 258 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE------------------------
Confidence 67788988765433 347888999988774 799999874221 11100
Q ss_pred EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (764)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~ 457 (764)
.....+.+......++|.++++|..|+.|++|++..+.
T Consensus 259 ------------------------------------------ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 259 ------------------------------------------IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred ------------------------------------------ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 00111333334445668999999999999999998764
Q ss_pred ccceecCccccccccccCcEEEEEECCCC
Q 004270 458 SRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (764)
... +. ...+..++.+++|.|..
T Consensus 297 ~~~-l~------~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 297 IRK-VN------EYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEe-ec------ccccCCCccceEEcccc
Confidence 222 21 12466788899999964
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.5e-25 Score=189.51 Aligned_cols=290 Identities=15% Similarity=0.233 Sum_probs=229.6
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC----------CCCcee-eEeccCCCCCCeeEEEecCCCEEEEEeCC
Q 004270 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTT----------DGDPRL-LRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (764)
Q Consensus 267 h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~----------~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 335 (764)
....|.+++|+|.|.+.+.|+...+.++..+..- ...+.. .+..+.|.+.|.|.+|+|+|+++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 5678999999999999999999999998754321 111122 23345688999999999999999999999
Q ss_pred CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (764)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 415 (764)
.+|++..+....+...=.
T Consensus 111 k~ik~l~fn~dt~~~~g~-------------------------------------------------------------- 128 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGH-------------------------------------------------------------- 128 (350)
T ss_pred ceEEEEecccccccccCc--------------------------------------------------------------
Confidence 999998776544322100
Q ss_pred eecCCCCCCCCeEEEEEccC----CCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE
Q 004270 416 ILRPCPENPTAVKACTISAC----GNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (764)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~----g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (764)
.+ ...-|.+.|+.++|-.+ |..+++++ .|-.|++-|...|+....+. +|.+.|.++- +-++-+++
T Consensus 129 dl-e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilaly-swn~~m~~ 198 (350)
T KOG0641|consen 129 DL-EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALY-SWNGAMFA 198 (350)
T ss_pred ce-eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEE-EecCcEEE
Confidence 00 00124577888888543 44555544 35688888999999888875 9999998874 44678999
Q ss_pred EEeCCCeEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE
Q 004270 491 SAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (764)
Q Consensus 491 s~~~dg~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~ 562 (764)
+|+.|.+|++||++-..++.++... +.+.+++..|.|++|++|-.|....+||++.++.++.+..|...|.+
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~ 278 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRC 278 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeE
Confidence 9999999999999988888777532 67899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCcc---c-eEEEE-eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 563 FCFSEDGKWLLSSGMDGSLRIWDVILA---R-QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 563 l~~s~dg~~l~s~s~dg~i~iwd~~~~---~-~~~~~-~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
+.|||...||++++.|..|++-|++.. + .+... .+...+..+.|+|..--+++.+.|. ++.+|...
T Consensus 279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk-t~tlwa~~ 349 (350)
T KOG0641|consen 279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK-TATLWALN 349 (350)
T ss_pred EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc-eEEEeccC
Confidence 999999999999999999999998732 1 12222 2334588899999998889999998 79999864
No 118
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.4e-27 Score=205.80 Aligned_cols=255 Identities=18% Similarity=0.255 Sum_probs=212.5
Q ss_pred CCeEEEEecCC--CeEEEecCCCCcceEEEEEeCC---eEEEEECCe-EEEEecC---ceEEEecccccceEEEEE---e
Q 004270 35 GKAFHIYNCAK--LNLVLVGPQLPKKIRALASYRD---YTFAAYGNH-IAVVKRA---HQVATWSRHSAKVNLLLL---F 102 (764)
Q Consensus 35 ~~~i~iwd~~~--~~~~~~~~~~~~~I~~~~~~~~---~~~~a~g~~-i~vw~~~---~~~~~~~~h~~~v~~l~~---~ 102 (764)
.|.+.|.++.. +-.....-.-...+..++++++ .+++|+|+. +++||.. ++++.++.|+..|.++.+ .
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~ 116 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR 116 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc
Confidence 57889999863 3333333445778899999876 555666654 9999964 457779999999999997 4
Q ss_pred CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Q 004270 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS 182 (764)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 182 (764)
+..++++|-|++|++|+...... +.++..|...+...+|+|... +.+++++.|+++++||++..-....+..|..
T Consensus 117 r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~ 191 (311)
T KOG0277|consen 117 RRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNS 191 (311)
T ss_pred ceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccc
Confidence 77888889999999999988877 888999999999999999876 8999999999999999986544444999999
Q ss_pred CeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-ee
Q 004270 183 SISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RL 259 (764)
Q Consensus 183 ~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-~~ 259 (764)
.|.|+.|+. +...|++|+.|+.|+.||++.-+ ++..+ .+|.-.|+.++|||....+|++++.|-+++|||...+ ..
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhccccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence 999999998 45688999999999999999765 45555 4458899999999998889999999999999999855 44
Q ss_pred eeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEE
Q 004270 260 QSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWI 296 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~ 296 (764)
+.+.. .|+.-|..+.|++ ++.++++++.|..+.||+
T Consensus 271 ~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 271 IETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhhh-ccceEEeccccccccCceeeecccccceeeec
Confidence 44554 7999999999988 456999999999999996
No 119
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=233.57 Aligned_cols=233 Identities=12% Similarity=0.180 Sum_probs=186.1
Q ss_pred EecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcc---cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC
Q 004270 88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE---NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (764)
Q Consensus 88 ~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (764)
.+.||.+.|.++.| ++++|++++.||+|++||+.+... ...++..+..|...+..+.|+|++. +.|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCC
Confidence 37899999999997 568999999999999999987542 1234667778888889999999863 6899999999
Q ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (764)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~ 241 (764)
+|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+..+....+..+.|.+++..++.
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999988887664445567889998873444
Q ss_pred EE---eCCCcEEEEECCCce-eeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEec-cCCCC
Q 004270 242 SG---ASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFR-SGHSA 315 (764)
Q Consensus 242 sg---~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~-~~h~~ 315 (764)
+| +.|+.|++||+++.. ........+...+....|++++++|++++ .|+.|++|++.... ++... ..+..
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~----~~~~~~~~s~~ 304 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER----LTFCSSYSSVE 304 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc----eEEEeeccCCC
Confidence 44 247899999998764 33333322334566678899999999887 59999999997652 22222 23556
Q ss_pred CCeeEEEecC
Q 004270 316 PPLCIRFYAN 325 (764)
Q Consensus 316 ~v~~i~~~~~ 325 (764)
++..++|.|.
T Consensus 305 ~~~g~~~~pk 314 (493)
T PTZ00421 305 PHKGLCMMPK 314 (493)
T ss_pred CCcceEeccc
Confidence 7888888884
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.2e-26 Score=227.12 Aligned_cols=283 Identities=19% Similarity=0.309 Sum_probs=233.1
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE-EeccCCCCEEE-EEEeeCCCCEEEEEeCCCc
Q 004270 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTA-LAFSSDGQPLLASGASSGV 248 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~-l~fs~d~~~~l~sg~~dg~ 248 (764)
-++-+.+.+|...|..++..+.. .+++++.||++++|+-..++.+.. ....+.+.|.. ++|.+..+..+++|+.|++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 46678899999999999887764 789999999999999876665542 22333566665 7777633336999999999
Q ss_pred EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
|.+|.+.+..+...+. +|.+.|.+++...++. +++||.|.++++|... .+...+.+|...|.++...|++ .
T Consensus 83 i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~-~ 153 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPEN-T 153 (745)
T ss_pred EEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch------hhhcccCCcchheeeeeecCCC-c
Confidence 9999999999999999 9999999999887776 9999999999999654 3455578999999999999987 8
Q ss_pred EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (764)
++||+.|.+|++|.-.
T Consensus 154 ~vTgsaDKtIklWk~~---------------------------------------------------------------- 169 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGG---------------------------------------------------------------- 169 (745)
T ss_pred EEeccCcceeeeccCC----------------------------------------------------------------
Confidence 9999999999999731
Q ss_pred ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCE
Q 004270 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (764)
....++ .+|.+.|+++++-+++ .
T Consensus 170 ------------------------------------------------~~l~tf--------~gHtD~VRgL~vl~~~-~ 192 (745)
T KOG0301|consen 170 ------------------------------------------------TLLKTF--------SGHTDCVRGLAVLDDS-H 192 (745)
T ss_pred ------------------------------------------------chhhhh--------ccchhheeeeEEecCC-C
Confidence 112222 3899999999999875 4
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270 489 MISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 489 l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~ 567 (764)
+++++.||.|+.|++ +++.+.++. +..-+.++....+++.++++++|+++++|+.. ++++.+.-....|.++.+-+
T Consensus 193 flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL 269 (745)
T ss_pred eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee
Confidence 889999999999999 555555554 44889999988999999999999999999876 77888876666899999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCc
Q 004270 568 DGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 568 dg~~l~s~s~dg~i~iwd~~~ 588 (764)
+|. +++|+.||.||||....
T Consensus 270 NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 270 NGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCC-EEEeccCceEEEEEecc
Confidence 987 66788899999998763
No 121
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=208.29 Aligned_cols=280 Identities=19% Similarity=0.326 Sum_probs=209.8
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 306 (764)
..|+.|++.|. +||+|..||.|.|||+.+...-..+. +|..+|++++|+++|+.|+++|.|..+++||+..+. +
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs----~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS----P 99 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCC----c
Confidence 78999999999 99999999999999999999877777 999999999999999999999999999999998774 3
Q ss_pred eEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccc
Q 004270 307 LRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 385 (764)
Q Consensus 307 ~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (764)
+... ....+|..+.|+|.. +..+..-.+..-.+.++..+
T Consensus 100 l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--------------------------------------- 139 (405)
T KOG1273|consen 100 LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--------------------------------------- 139 (405)
T ss_pred eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC---------------------------------------
Confidence 3332 467899999999943 33332222222222222110
Q ss_pred cccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCc
Q 004270 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465 (764)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~ 465 (764)
.-+.+..+++|..
T Consensus 140 ----------------------------------------~h~~Lp~d~d~dl--------------------------- 152 (405)
T KOG1273|consen 140 ----------------------------------------KHSVLPKDDDGDL--------------------------- 152 (405)
T ss_pred ----------------------------------------ceeeccCCCcccc---------------------------
Confidence 0001111111110
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d 543 (764)
+....+..|++.|+++++|...|.+.++|..+.+++..++.. ..|..+.++..|+.+++.+.|..||.|+
T Consensus 153 --------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 153 --------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred --------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 011112268889999999999999999999999998888765 6889999999999999999999999999
Q ss_pred ccCCe---------EEEEeec--CCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCccceEEEEeeCCc--eEEEEEcCC
Q 004270 544 VVALR---------MVRKFEG--HTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS--ITALSLSPN 609 (764)
Q Consensus 544 ~~~~~---------~~~~~~~--h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~--v~~l~~sp~ 609 (764)
++.-- +..+++. ....-.+++||.||.|++.++ .-..++||.-..|.+++.+.+... ...+.|+|-
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 86321 1111111 122345789999999998776 456899999999999999988763 889999999
Q ss_pred CCeEEEEEeCCCeEEEEecc
Q 004270 610 MDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 610 g~~lat~~~d~~~i~lW~~~ 629 (764)
...+++-. .| .|++|...
T Consensus 305 rp~i~si~-sg-~v~iw~~~ 322 (405)
T KOG1273|consen 305 RPIIASIA-SG-VVYIWAVV 322 (405)
T ss_pred eeeeeecc-CC-ceEEEEee
Confidence 98888883 33 59999864
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=229.30 Aligned_cols=277 Identities=14% Similarity=0.321 Sum_probs=228.8
Q ss_pred cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
.+|...-+.++|.|+|.+|++++.||.|++|+.......++.+. .+...|.+++.. +.+|++++.++++.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 47999999999999999999999999999998765533444332 267777777764 5599999999999999886
Q ss_pred cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (764)
.+.....+. ...
T Consensus 85 s~~~~~iL~--------------------------------------------------------------------Rft 96 (933)
T KOG1274|consen 85 SGEEDTILA--------------------------------------------------------------------RFT 96 (933)
T ss_pred CCCccceee--------------------------------------------------------------------eee
Confidence 654322111 112
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
.+++.++++.+|++++.|+.|-.|++.++........+. +|.++|.++.++|.+.+||+.+-||.|++|++.
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 678999999999999999999999999999988888875 999999999999999999999999999999999
Q ss_pred CCCeeeeEec---------CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec--CCCCeeEEEEcCCCcEEE
Q 004270 505 GRDLKSRWEV---------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL 573 (764)
Q Consensus 505 ~~~~~~~~~~---------~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~--h~~~i~~l~~s~dg~~l~ 573 (764)
++.+..++.. ...+..++|+|+|..+++.+.|+.|.+|+..+++....+.. |...+.+++|||+|+|||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 9987776643 24567899999999999999999999999999998888764 445599999999999999
Q ss_pred EEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 004270 574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626 (764)
Q Consensus 574 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW 626 (764)
+++.||.|.|||+++- ..-.....|++++|.|+++-+-.....+. ..+|
T Consensus 249 As~~~g~I~vWnv~t~---~~~~~~~~Vc~~aw~p~~n~it~~~~~g~-~~~~ 297 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDTH---ERHEFKRAVCCEAWKPNANAITLITALGT-LGVS 297 (933)
T ss_pred eeccCCcEEEEecccc---hhccccceeEEEecCCCCCeeEEEeeccc-cccC
Confidence 9999999999999982 22223345999999999988766666552 4444
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.3e-26 Score=221.62 Aligned_cols=282 Identities=16% Similarity=0.245 Sum_probs=238.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC---ceEEEEecc-CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD---EELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (764)
Q Consensus 179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~---~~~~~~~~~-~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~ 254 (764)
.|..-|.++++|...+.+.+|+. |.|+|||+... ..+..+..- ....|+++...|||+ .|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence 47888899999999999999986 88999999743 233333322 246799999999999 7888999999999999
Q ss_pred CCceeeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270 255 EKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (764)
Q Consensus 255 ~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (764)
....+..... ....-...+++.+||.+..+++..||.|.|||+... .+++.+.||...+.||.+++||..|-+|+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecCC
Confidence 8764433222 123346788999999999999999999999999877 68899999999999999999999999999
Q ss_pred CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (764)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 413 (764)
-|.++|.||++++.+..+..
T Consensus 571 lDntvRcWDlregrqlqqhd------------------------------------------------------------ 590 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHD------------------------------------------------------------ 590 (705)
T ss_pred Cccceeehhhhhhhhhhhhh------------------------------------------------------------
Confidence 99999999998876554321
Q ss_pred ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe
Q 004270 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG 493 (764)
Q Consensus 414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 493 (764)
..+.|.++..+|.+.++++|..++.+.+........... .-|...|.++.|.+.|+++++.+
T Consensus 591 ---------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql---------hlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 591 ---------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL---------HLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ---------hhhhheecccCCCccceeeecccCcEEEEecCCccceee---------cccccEEEEEEecccCceeeecC
Confidence 127788899999999999999999999988765544332 37999999999999999999999
Q ss_pred CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc
Q 004270 494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (764)
Q Consensus 494 ~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~ 544 (764)
.|..+..|...-|..+...+..+.|.++.+|.|++++++|+.|....||.+
T Consensus 653 kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999998888888899999999999999999999998888864
No 124
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=202.47 Aligned_cols=209 Identities=14% Similarity=0.231 Sum_probs=162.2
Q ss_pred EEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEE
Q 004270 87 ATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ 164 (764)
Q Consensus 87 ~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~ 164 (764)
..|+||.+.|++++| ||++|++++.|++|++|++.+.+...-.........+....++|+||-. ..++..-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~-s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK-SVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc-eEEEEEccCCEEE
Confidence 348999999999998 7999999999999999999876542111112222334556788999984 3444445566799
Q ss_pred EEeCCC---CeEEE---------EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEE
Q 004270 165 LWNIST---KKKLY---------EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232 (764)
Q Consensus 165 iwd~~~---~~~~~---------~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~f 232 (764)
+|-... |...+ --+.|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+... ...-+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccceee
Confidence 996532 22111 123467778888888889999999999999999999 9999888765 566788999
Q ss_pred eeCCCCEEEEEeCCCcEEEEECC---Cc-----eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 233 SSDGQPLLASGASSGVISIWNLE---KR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 233 s~d~~~~l~sg~~dg~i~iwd~~---~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
||+|+ ++++++..-.|++|.+- .| ..+..+. +|.+.|..++|+++...+++.+.||++++||.+..
T Consensus 237 SP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 237 SPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred CCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 99999 88888888899999863 22 2344566 99999999999999999999999999999988754
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.9e-24 Score=219.42 Aligned_cols=284 Identities=13% Similarity=0.154 Sum_probs=217.8
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
++++++.|+.|.+||+.+++.+..+. .+ ..+.+++|+|++..+ ++++.++.|++|+.... +....+..+. .+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~-~~ 75 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGP-DP 75 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCC-Cc
Confidence 78899999999999999998888876 44 346789999999876 56778899999988754 3333333333 35
Q ss_pred eeEEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270 318 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 318 ~~i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
..++|+|+++.++++ +.++.+++||+.+.+....+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------------------------------------------- 112 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------------------------------------------- 112 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------------------
Confidence 678999999877655 568999999986543222110
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECcCCcccceecCccccccccccC
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNG 475 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (764)
....+.+++++|+|++++++..++ .+..|+..++....... ...
T Consensus 113 --------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~ 157 (300)
T TIGR03866 113 --------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQ 157 (300)
T ss_pred --------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCC
Confidence 013356799999999999988875 56778988776654432 223
Q ss_pred cEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEE-eCCCeEEEEEcc
Q 004270 476 EVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV 545 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~ 545 (764)
...+++|++++++++.+ ..++.|++||+.+++.+..+... .....++|+|++++++++ ..++.+.+||++
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 45779999999988654 46899999999999877766532 123568899999986554 456789999999
Q ss_pred CCeEEEEeecCCCCeeEEEEcCCCcEEEEE-eCCCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270 546 ALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSP 608 (764)
Q Consensus 546 ~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp 608 (764)
+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++.+..++.....++++++|
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 998876654 44578999999999999876 468999999999999999999888889999876
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.8e-25 Score=199.81 Aligned_cols=276 Identities=16% Similarity=0.237 Sum_probs=216.8
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~ 260 (764)
...|+.+.|+|.++.|++++.||.+++|++........+.+ ..++.+++|.++.. +++|+.||.|+.+|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~d~~~--~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFADEST--IVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeeccCCce--EEEeccCceEEEEEecCCcce
Confidence 67899999999999999999999999999998877766665 68999999998764 889999999999999988766
Q ss_pred eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (764)
Q Consensus 261 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i 340 (764)
..- .|..+|.++.+++....+++||.|++|++||..... ..... .....|.++.. .|+.|+.|+.|..+.+
T Consensus 89 ~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~----~~~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 89 QIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV----VVGTF-DQGKKVYCMDV--SGNRLVVGTSDRKVLI 159 (323)
T ss_pred eec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccc----ccccc-ccCceEEEEec--cCCEEEEeecCceEEE
Confidence 554 599999999999988899999999999999876531 22222 22336777665 4678999999999999
Q ss_pred EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (764)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (764)
||+++........ .
T Consensus 160 yDLRn~~~~~q~r------------------------------------------------------------------e 173 (323)
T KOG1036|consen 160 YDLRNLDEPFQRR------------------------------------------------------------------E 173 (323)
T ss_pred EEcccccchhhhc------------------------------------------------------------------c
Confidence 9998754433111 0
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC----cccceecCcccc-ccccccCcEEEEEECCCCCEEEEEeCC
Q 004270 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG----ISRGSYLDMSER-SNYAHNGEVVGVACDSTNTLMISAGYH 495 (764)
Q Consensus 421 ~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~----~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~d 495 (764)
...+..++++++-|++.-.++++-+|.|.+=.+... .....|.-.... ....-..+|.+|+|+|-...|+||+.|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 122367899999999999999999999887655544 222222100000 001123479999999999999999999
Q ss_pred CeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeC
Q 004270 496 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD 535 (764)
Q Consensus 496 g~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~ 535 (764)
|.|.+||+.+.+.+..+... ..|.+++|+.+|..||+++.
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999888887665 77999999999999999975
No 127
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.6e-24 Score=226.79 Aligned_cols=228 Identities=15% Similarity=0.164 Sum_probs=180.7
Q ss_pred EecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--------EEEEEcCC
Q 004270 109 IDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--------KLYEFKGW 180 (764)
Q Consensus 109 ~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~h 180 (764)
|+.++.|++|+...... +..+..|...+..+.|+|... +.|++|+.||+|++||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~----v~~L~gH~~~V~~lafsP~~~-~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP----VIKLKGHTSSILDLQFNPCFS-EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce----EEEEcCCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 55678899999876543 677888889999999999732 689999999999999997642 34568899
Q ss_pred CCCeEEEEEcCCCCE-EEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270 181 GSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~-la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~ 259 (764)
...|.+++|+|++.. |++++.|+.|+|||+++++.+..+.. ...|.+++|+|+|. +|++++.|+.|+|||+++++.
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE
Confidence 999999999999875 57899999999999999988777753 47899999999999 899999999999999999999
Q ss_pred eeeeecccccCeeEE-----EEecCCCEEEEEcCCC----cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270 260 QSVIREAHDNAIISL-----HFFANEPVLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l-----~~~~~~~~l~s~~~d~----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 330 (764)
+..+. +|.+.+... .|++++.++++++.|+ +|++||++.... +........+.+.+......++|.+++
T Consensus 202 i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 202 ASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEEE
Confidence 88887 888765433 3458888999988774 799999875432 122222333334333333444688999
Q ss_pred EEeCCCcEEEEEeecc
Q 004270 331 SAGQDRAFRLFSVIQD 346 (764)
Q Consensus 331 s~~~dg~i~i~d~~~~ 346 (764)
+|+.|+.|++|++..+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 9999999999998654
No 128
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=8.8e-25 Score=214.82 Aligned_cols=169 Identities=16% Similarity=0.244 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCceEE-----EEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270 172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELV-----TFTHSMRGAVTALAFSSDGQPLLASGAS 245 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~l~fs~d~~~~l~sg~~ 245 (764)
+.+..+.+|...|+.+.|+|- ..+||+++.|..|+||.+..|-... ....+.+-.|.++.|+|....+|+++.
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a- 148 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA- 148 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-
Confidence 345567899999999999994 4588999999999999998443211 112333568899999998776777765
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC-CeeEEEec
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYA 324 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~ 324 (764)
.|.++|||+.+++.+..+. +|...|.+..|+.||.+|++++.|..|+|||-+... +.+....+|.+. =..+.|..
T Consensus 149 ~g~v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~---~piQ~te~H~~~rdsRv~w~G 224 (1012)
T KOG1445|consen 149 HGSVYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM---EPIQTTEGHGGMRDSRVLWAG 224 (1012)
T ss_pred CceEEEEEcccCceeeccc-CCchhhhccccccCCceEeeecCCcceEEeCCccCC---Cccccccccccchhheeeecc
Confidence 7899999999999999998 999999999999999999999999999999876543 455555777653 23566766
Q ss_pred CCCEEEEEeCC----CcEEEEEeec
Q 004270 325 NGRHILSAGQD----RAFRLFSVIQ 345 (764)
Q Consensus 325 ~~~~l~s~~~d----g~i~i~d~~~ 345 (764)
+-..|++.+.+ +.+++||.+.
T Consensus 225 n~~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 225 NWERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred chhhhhhcccchhhheeeeeeeccc
Confidence 65577776654 5678888754
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.5e-24 Score=216.73 Aligned_cols=294 Identities=11% Similarity=0.122 Sum_probs=220.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 230 (764)
+.+++++.|+.+.+||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+..+ ..+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--PDPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--CCccEE
Confidence 4678899999999999999999999987544 6789999999876 56677899999999999887776543 335788
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC-cEEEEEecCCCCCceeeEe
Q 004270 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~ 309 (764)
+|+|+++.++++++.++.|++||+.+++.+..+. +...+.+++|+|++.++++++.++ .+.+|+.... .....
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~~~~~ 152 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----EIVDN 152 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----eEEEE
Confidence 9999998444555678999999999988777765 334578899999999999888765 4666776543 22222
Q ss_pred ccCCCCCCeeEEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270 310 RSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (764)
. .....+.+++|+|++++++.+ ..++.+++||+.+++....+...
T Consensus 153 ~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~--------------------------------- 198 (300)
T TIGR03866 153 V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE--------------------------------- 198 (300)
T ss_pred E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---------------------------------
Confidence 2 123456789999999988655 46899999999766443322100
Q ss_pred ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECcCCcccceecCccc
Q 004270 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSE 467 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~ 467 (764)
. ............++++|+|++++++ ..++.+.+||+.+++.....
T Consensus 199 --------------------~--------~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----- 245 (300)
T TIGR03866 199 --------------------I--------PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL----- 245 (300)
T ss_pred --------------------c--------cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----
Confidence 0 0000001234468899999987664 45678999999888766543
Q ss_pred cccccccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecCcceEEEEEee
Q 004270 468 RSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 525 (764)
Q Consensus 468 ~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~ 525 (764)
.+...+.+++|+|++++|+++ +.+|.|++||+.+++.+..++.+.....++++|
T Consensus 246 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 246 ----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred ----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 234578899999999999876 468999999999999999998887778888764
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.3e-25 Score=214.86 Aligned_cols=319 Identities=14% Similarity=0.227 Sum_probs=244.2
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw 252 (764)
+-..+++|.+.|.++...|.|.+||+|+.||+|+||.+.+|.++.++... +.|.|++|+|.+..-+++......+.|-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEecCceEEe
Confidence 34567899999999999999999999999999999999999999999874 7899999999876444444444557777
Q ss_pred ECCCceeeeeeecccccCeeEEEEecCCCEEEEE----cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~----~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
+..-|..+..-. ....|+++ ..+..+..|.-...+....-+...-.|...|..+.|+..|.|
T Consensus 470 np~~G~~~e~~~--------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVGP--------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhcc--------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence 654442211110 01112221 235577888654332222224455579999999999999999
Q ss_pred EEEEeCC---CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270 329 ILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (764)
Q Consensus 329 l~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (764)
|++...+ ..+.|+++......
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ-------------------------------------------------------- 559 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQ-------------------------------------------------------- 559 (733)
T ss_pred EEEeccCCCcceEEEEeccccccc--------------------------------------------------------
Confidence 9987654 45666665433211
Q ss_pred EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (764)
.+.....+.+.++.|+|...++++++.. .|++||+..+..+..+. .....|..++++|.
T Consensus 560 ------------~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 560 ------------SPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPN 618 (733)
T ss_pred ------------CchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCC
Confidence 1122334789999999999999998764 79999999888777765 56678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC-CCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEcc------CC---eEEEEee
Q 004270 486 NTLMISAGYHGDIKVWDFKG-RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVV------AL---RMVRKFE 554 (764)
Q Consensus 486 ~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~------~~---~~~~~~~ 554 (764)
|..|+.++.|+.+..+|+.- .++.+++.++ ..+++++|++.-.++++|++||++.||.-. .. -++..++
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 99999999999999999984 4566666666 889999999999999999999999998532 11 3467888
Q ss_pred cCCCC----eeEEEEcCCCcEEEEEeCCCcEEEE
Q 004270 555 GHTDR----ITDFCFSEDGKWLLSSGMDGSLRIW 584 (764)
Q Consensus 555 ~h~~~----i~~l~~s~dg~~l~s~s~dg~i~iw 584 (764)
||... |.+..|+|...||++++.||+|++|
T Consensus 699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99766 8999999999999999999999998
No 131
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.6e-23 Score=211.50 Aligned_cols=494 Identities=17% Similarity=0.220 Sum_probs=315.7
Q ss_pred EEeCCeE--EEEECCeEEEEec--CceEEEecccccceEEEEEe-----CCEEEEEecCCcEEEEEccCCcccccceeeE
Q 004270 63 ASYRDYT--FAAYGNHIAVVKR--AHQVATWSRHSAKVNLLLLF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHV 133 (764)
Q Consensus 63 ~~~~~~~--~~a~g~~i~vw~~--~~~~~~~~~h~~~v~~l~~~-----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~ 133 (764)
.||+|.+ |+.+++.|.||.. +..+..+.+|..+++.+.++ -.++++++.||.|++||...+++ ++++
T Consensus 23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L----lkt~ 98 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL----LKTF 98 (792)
T ss_pred ccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE----EEEE
Confidence 4788844 4567889999985 45566699999999999863 26888999999999999999988 4444
Q ss_pred ecCCccccEEEEeCCCCC-CEEE-EEeCCC------------cEEEEeCCC--CeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 004270 134 KLDDKFTPTCIMHPDTYL-NKVI-VGSQEG------------SLQLWNIST--KKKLYEFKGWGSSISSCVSSPALDVVA 197 (764)
Q Consensus 134 ~~~~~~~~~~~~~p~~~~-~~l~-~~~~dg------------~i~iwd~~~--~~~~~~~~~h~~~i~~~~~sp~~~~la 197 (764)
..+.... ...+.|.-.. ...+ .+..+. +.+-+.+.+ ......++.|.. -.++.+++.|.+.+
T Consensus 99 ~~~~~v~-~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 99 DNNLPVH-ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKG 176 (792)
T ss_pred ecCCcee-EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEE
Confidence 4322211 1111111000 0111 111111 111111111 011111222222 46788888887776
Q ss_pred EEEcCCeEEEEEccCCceE---EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCe
Q 004270 198 VGCSDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAI 271 (764)
Q Consensus 198 ~g~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~h~~~v 271 (764)
.... ..+.+|+..++... +....+|...+++.+++|.++ ++|+|..||.|.+|.--. .+...++..-|...|
T Consensus 177 i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 177 IVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 6654 56889998875511 112234466789999999999 999999999999996322 233333333688899
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccc
Q 004270 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (764)
Q Consensus 272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 351 (764)
.+++|+++|.+|++||.++.+.+|.+.++. .+.+ ..-.++|..+.++||+.+.+....|+.|.+....+......
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC--cccc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 999999999999999999999999887764 2333 34578999999999999999999999999988765544433
Q ss_pred ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (764)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (764)
++...... -.......+-.+.++
T Consensus 330 Isgi~~~~---------------------------------------------------------~~~k~~~~~l~t~~~ 352 (792)
T KOG1963|consen 330 ISGIKPPT---------------------------------------------------------PSTKTRPQSLTTGVS 352 (792)
T ss_pred ccCccCCC---------------------------------------------------------ccccccccccceeEE
Confidence 32211000 000111235677889
Q ss_pred EccCCCEEEEEecCCcEEEEECcCCcccceecCccccc--cc-cccCcEEEEEECCCCCEEEEEe--------CC--CeE
Q 004270 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS--NY-AHNGEVVGVACDSTNTLMISAG--------YH--GDI 498 (764)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~--~~-~h~~~v~~l~~~~~~~~l~s~~--------~d--g~v 498 (764)
++|.-+.++..+..|+|++||+.+...+..+....... .. .+.-.++.++.+-.|.+++|.- .| -.+
T Consensus 353 idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 353 IDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred EcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence 99988889999999999999999887775553211110 01 3344678888888899998874 22 358
Q ss_pred EEEECCCCCee----eeEe--cCcceEEEEE-eecCC-EEEEEeCCCeEEEEEccCC----------eEEEEeecCCCCe
Q 004270 499 KVWDFKGRDLK----SRWE--VGCSLVKIVY-HRVNG-LLATVADDLVIRLFDVVAL----------RMVRKFEGHTDRI 560 (764)
Q Consensus 499 ~iwd~~~~~~~----~~~~--~~~~i~~~~~-s~~~~-~la~~~~d~~i~v~d~~~~----------~~~~~~~~h~~~i 560 (764)
++|-......- ..+. ++..+...++ ++... ..++++.||.++||-+... .+...-.-|..++
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i 512 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI 512 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence 89987655432 2222 2233333333 33333 8999999999999988432 2222222378899
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEEcCc-cceEEEEeeCC-ceEEEEEcC----CCCeEEEEEeCCCeEEEEeccc
Q 004270 561 TDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDV-SITALSLSP----NMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 561 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~-~v~~l~~sp----~g~~lat~~~d~~~i~lW~~~~ 630 (764)
++++||.||..|+ ++.|++|.+||..+ ..+........ ++..+.+.. ++. +..++ .. .+.+|++..
T Consensus 513 ~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~l~~WNll~ 584 (792)
T KOG1963|consen 513 TALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA-LVHAT-QQ-RLSVWNLLS 584 (792)
T ss_pred cchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc-eeecc-Cc-eEehHhhhh
Confidence 9999999997555 66789999999988 44333332211 233333332 222 22222 23 588888743
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.4e-24 Score=192.60 Aligned_cols=298 Identities=16% Similarity=0.270 Sum_probs=231.1
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCc----------eEE----EEeccCCCCEEEEEEeeCCCCEEEE
Q 004270 178 KGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE----------ELV----TFTHSMRGAVTALAFSSDGQPLLAS 242 (764)
Q Consensus 178 ~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~----------~~~----~~~~~~~~~v~~l~fs~d~~~~l~s 242 (764)
..|.+.|+++...+ .|+++++|+.||.|.+||++... .+. .-...|+-.|.++.|-|-..-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 56889999999987 58999999999999999998533 111 1112346689999999976668999
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC---CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCee
Q 004270 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (764)
Q Consensus 243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (764)
++.|.++++||.++.+....+. -++.|.+-+++|=. -++++|..|-.|++.|+..+ .....+.||...|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEE
Confidence 9999999999999988888776 67788888888843 37788888899999999877 577888999999999
Q ss_pred EEEecCCCE-EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270 320 IRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (764)
Q Consensus 320 i~~~~~~~~-l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (764)
+.|+|...+ |++|+.||.+++||++..
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRra---------------------------------------------------- 221 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRA---------------------------------------------------- 221 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecc----------------------------------------------------
Confidence 999996654 678999999999998642
Q ss_pred CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
.|...+.|...++....+. ...+|.+.|.
T Consensus 222 ----------------------------------------------sgcf~~lD~hn~k~~p~~~-----~n~ah~gkvn 250 (397)
T KOG4283|consen 222 ----------------------------------------------SGCFRVLDQHNTKRPPILK-----TNTAHYGKVN 250 (397)
T ss_pred ----------------------------------------------cceeEEeecccCccCcccc-----ccccccceee
Confidence 1122222322222111111 1148999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe--------cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEE
Q 004270 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 550 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~ 550 (764)
+++|..++.++++++.|..+++|+..+|+....-- .+-.+. +. +-+...++.--.++.+.++++-.+..+
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~i 328 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFV 328 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEE
Confidence 99999999999999999999999998775322111 111111 22 334555555556799999999999999
Q ss_pred EEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 551 ~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
+.+.+|-..|.+.++-|+-+...+++.|+.|..|-.
T Consensus 329 r~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 329 RRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 999999999999999999999999999999999986
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.8e-25 Score=191.51 Aligned_cols=237 Identities=19% Similarity=0.261 Sum_probs=191.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCce--EEEEecc
Q 004270 150 YLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHS 222 (764)
Q Consensus 150 ~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~ 222 (764)
|..+|++++.|++|+|+.+++. +++.++.||.++|..++|.. -|.+||+++.||.|.||.-.+++- ..... .
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~-~ 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHA-A 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhh-h
Confidence 3478999999999999998754 57889999999999999986 799999999999999999887752 23333 3
Q ss_pred CCCCEEEEEEeeCCC-CEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeeEEEEecC---C-----------CEEEE
Q 004270 223 MRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFAN---E-----------PVLMS 285 (764)
Q Consensus 223 ~~~~v~~l~fs~d~~-~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~---~-----------~~l~s 285 (764)
|...|++++|.|.+- .+|++++.||.|.|.+.++. -....+..+|.-.|++++|.|. | +.|++
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence 488999999999752 37889999999999987654 3344455589999999999986 4 46999
Q ss_pred EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC----CCEEEEEeCCCcEEEEEeecccccccccchhhhHHH
Q 004270 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361 (764)
Q Consensus 286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 361 (764)
|+.|+.|+||+++.. ....-+.+.+|.+.|+.++|.|. ..+|++++.||++.||.........+
T Consensus 181 gGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk---------- 248 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK---------- 248 (299)
T ss_pred cCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc----------
Confidence 999999999998865 44556668999999999999994 35799999999999998653211111
Q ss_pred hhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE
Q 004270 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (764)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 441 (764)
.......+..+..+.||..|+.|++
T Consensus 249 -------------------------------------------------------~tll~~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 249 -------------------------------------------------------KTLLEEFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred -------------------------------------------------------ccccccCCcceEEEEEeccccEEEE
Confidence 0111123478999999999999999
Q ss_pred EecCCcEEEEECc
Q 004270 442 GTAGGWIERFNLQ 454 (764)
Q Consensus 442 g~~~g~i~i~~~~ 454 (764)
++.|+.|.+|.-.
T Consensus 274 s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 274 SGGDNKVTLWKEN 286 (299)
T ss_pred ecCCcEEEEEEeC
Confidence 9999999999754
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.9e-25 Score=192.53 Aligned_cols=254 Identities=16% Similarity=0.271 Sum_probs=207.3
Q ss_pred ecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 89 ~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
...|++.|..+.. .|++|++|+.|++|+|+.+.+... ..++.++..|.+.+..+++....|.+.|++++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 5678888888764 699999999999999999987654 2237788999999999998776667999999999999999
Q ss_pred eCCCCe--EEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEccCC--ceEEEEeccCCCCEEEEEEeeC---CC
Q 004270 167 NISTKK--KLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSD---GQ 237 (764)
Q Consensus 167 d~~~~~--~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d---~~ 237 (764)
.-.+|+ ..+.+..|...|++++|.|. |-.||+++.||.|.|.+.++. -....+...|.-.|++++|.|. |.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 987773 45667899999999999996 568999999999999998865 2334444455778999999986 31
Q ss_pred ----------CEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeeEEEEecCC----CEEEEEcCCCcEEEEEecCCC
Q 004270 238 ----------PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANE----PVLMSASADNSIKMWIFDTTD 301 (764)
Q Consensus 238 ----------~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~d~~i~vw~~~~~~ 301 (764)
..|++|+.|..|+||+..++ +...++. +|.+-|+.++|.|.- .++++++.||++.||..+..
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e- 243 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE- 243 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-
Confidence 25999999999999999876 3334455 999999999999964 38999999999999987733
Q ss_pred CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
..+-....+......+..+.|+..|+.|+.++.|+.+.+|.-..
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 22233344445678899999999999999999999999997543
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.1e-24 Score=201.85 Aligned_cols=290 Identities=17% Similarity=0.281 Sum_probs=234.2
Q ss_pred cccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC
Q 004270 92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169 (764)
Q Consensus 92 h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~ 169 (764)
-.++|+++.| ....|++++.||++++|.++...-. .+..+.+..-.+.++.|+|+|. ..+++++....++.||+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCc-eEEEecccceEEEEeecc
Confidence 3567899887 5788999999999999999876542 3677777788888999999993 389999999999999999
Q ss_pred CCeEEE--EEcCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270 170 TKKKLY--EFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (764)
Q Consensus 170 ~~~~~~--~~~~h-~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d 246 (764)
+.+... ...++ ...+.....||++++||..+..|.|.+....+++.+.+++. .+.|..++|+.||+ .|++.+.+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk-~l~~~~~~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSK-ELLASGGT 365 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCc-EEEEEcCC
Confidence 886543 33344 34677889999999999999999999999999999999988 58999999999998 66666678
Q ss_pred CcEEEEECCCceeeeeeecccccCe--eEEEEecCCCEEEEEcCCCcEEEEEecCC--CCCceeeEeccCCCCCCeeEEE
Q 004270 247 GVISIWNLEKRRLQSVIREAHDNAI--ISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~~~~~~h~~~v~~i~~ 322 (764)
|.|.+||++...+++.+. -.+.| ++++.++++.+|++|+..|.|.|||.+.. ...++++..+..-...|+++.|
T Consensus 366 GeV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F 443 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFV--DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF 443 (514)
T ss_pred ceEEEEecCCcceEEEEe--ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence 999999999998888887 34444 46667789999999999999999986543 3456777777778889999999
Q ss_pred ecCCCEEEEEeC--CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 323 YANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 323 ~~~~~~l~s~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
++|++.|+.++. +..+|+-.+.+...-..+
T Consensus 444 n~d~qiLAiaS~~~knalrLVHvPS~TVFsNf------------------------------------------------ 475 (514)
T KOG2055|consen 444 NHDAQILAIASRVKKNALRLVHVPSCTVFSNF------------------------------------------------ 475 (514)
T ss_pred CcchhhhhhhhhccccceEEEeccceeeeccC------------------------------------------------
Confidence 999999887764 567777765433221111
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~ 454 (764)
......-+.++|++|||.|.++++|...|.+.+|.+.
T Consensus 476 -----------------P~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 476 -----------------PTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -----------------CCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 1111233789999999999999999999999999864
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=3e-24 Score=204.38 Aligned_cols=254 Identities=18% Similarity=0.345 Sum_probs=203.9
Q ss_pred ecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccc------cceeeEecCCccccEEEEeCCCCCCEEEEEeC
Q 004270 89 WSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENL------APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ 159 (764)
Q Consensus 89 ~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~ 159 (764)
.-.|.+.|+.+.. +...+++.+..+.|.|||.....-.. .|-..+.+|.+....+.+++... ..+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-g~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-GTLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-eeEeeccC
Confidence 4457788887763 45677778888999999997654322 22336667776556677777654 58999999
Q ss_pred CCcEEEEeCCCCe-------EEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccC--CceEEEEeccCCCCEEE
Q 004270 160 EGSLQLWNISTKK-------KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTA 229 (764)
Q Consensus 160 dg~i~iwd~~~~~-------~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~ 229 (764)
|++|++||+.... ....+.+|...|..++|++- .+++++++.|+.+.|||+++ .+...... .|.++|.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeE
Confidence 9999999997432 35668999999999999995 46888999999999999995 33344443 45899999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCC-------
Q 004270 230 LAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTT------- 300 (764)
Q Consensus 230 l~fs~d~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~------- 300 (764)
++|+|-+.++||+|+.|++|++||+++. +.+.++. +|...|..+.|+|.. ..|++++.|+.+.+||+..-
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999999989999999999999999986 4566666 999999999999965 58999999999999998653
Q ss_pred ---CCCceeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeec
Q 004270 301 ---DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 301 ---~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~ 345 (764)
++.+.++....||...|..+.|+|.. -.+++.+.|+.+.||....
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 34456777888999999999999954 5677889999999999763
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.4e-24 Score=190.72 Aligned_cols=282 Identities=15% Similarity=0.267 Sum_probs=216.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004270 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (764)
Q Consensus 184 i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 263 (764)
-.|+.|++-|.+||+|+.||.|.|||+.|...-+.+..| ..+|++++||+||+ .|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEE
Confidence 689999999999999999999999999998876666655 88999999999999 9999999999999999999999999
Q ss_pred ecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 264 REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 264 ~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
+ ..++|+.+.|+|.....+.++ .+..- .-+.|++.-..++.-..|+.+.
T Consensus 104 r--f~spv~~~q~hp~k~n~~va~~~~~sp-------------------------~vi~~s~~~h~~Lp~d~d~dln--- 153 (405)
T KOG1273|consen 104 R--FDSPVWGAQWHPRKRNKCVATIMEESP-------------------------VVIDFSDPKHSVLPKDDDGDLN--- 153 (405)
T ss_pred E--ccCccceeeeccccCCeEEEEEecCCc-------------------------EEEEecCCceeeccCCCccccc---
Confidence 8 788999999999654333222 11111 1223332111222223333211
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
T Consensus 154 -------------------------------------------------------------------------------- 153 (405)
T KOG1273|consen 154 -------------------------------------------------------------------------------- 153 (405)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
....+..|.+.|+++++|+..|.+.+++..+.+.+..+. ......|..+.++..|+.++.-+.|..||.|+
T Consensus 154 --~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r-------its~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 154 --SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR-------ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred --cccccccccCCCCEEEEecCcceEEEEecchheeeeeee-------echheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 112223577789999999999999999999998888775 12347899999999999999999999999999
Q ss_pred CCCC-------CeeeeEec-----CcceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeEEEEeecCC-CCeeEEEEcCC
Q 004270 503 FKGR-------DLKSRWEV-----GCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHT-DRITDFCFSED 568 (764)
Q Consensus 503 ~~~~-------~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~~~~~h~-~~i~~l~~s~d 568 (764)
++.- ++....+. ...=.+++|+.+|.|+++++. -..++||.-..|.+++.+.|.. ....++.|+|-
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 7621 11111111 133457899999999988764 4689999999999999999988 56788999999
Q ss_pred CcEEEEEeCCCcEEEEEcC
Q 004270 569 GKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 569 g~~l~s~s~dg~i~iwd~~ 587 (764)
...+++- ..|.|+||...
T Consensus 305 rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeeeeec-cCCceEEEEee
Confidence 8888877 67899999854
No 138
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-21 Score=200.62 Aligned_cols=449 Identities=16% Similarity=0.230 Sum_probs=313.7
Q ss_pred EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcC
Q 004270 101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKG 179 (764)
Q Consensus 101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 179 (764)
.|+++++.+. ...|.||...++++ +..+..+........+.|.... .++++.+.+|.|++||...++++.++..
T Consensus 26 nD~k~l~~~~-~~~V~VyS~~Tg~~----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 26 NDAKFLFLCT-GNFVKVYSTATGEC----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cCCcEEEEee-CCEEEEEecchHhh----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 3778887776 77899999999999 6778888888888888887753 5788999999999999999999999876
Q ss_pred CCCCeEEEEEcCC---CCEEE-EEEcCCe-EEEEEccCCceEEEEe------------ccCCCCEEEEEEeeCCCCEEEE
Q 004270 180 WGSSISSCVSSPA---LDVVA-VGCSDGK-IHVHNVRYDEELVTFT------------HSMRGAVTALAFSSDGQPLLAS 242 (764)
Q Consensus 180 h~~~i~~~~~sp~---~~~la-~g~~dg~-i~iwd~~~~~~~~~~~------------~~~~~~v~~l~fs~d~~~~l~s 242 (764)
..++..+.+.|. ....+ .+..|.. +.....+..+....+. ..+. .-.++.+++.|. +.+.
T Consensus 101 -~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge-~~~i 177 (792)
T KOG1963|consen 101 -NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGE-FKGI 177 (792)
T ss_pred -CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCce-EEEE
Confidence 344555555331 11222 2222211 1111111112111111 1111 146778888887 4433
Q ss_pred EeCCCcEEEEECCCcee---eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCee
Q 004270 243 GASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (764)
Q Consensus 243 g~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (764)
..+..+.+|+..++.. .+.....|.-.+++.+++|++++++++..||.|.+|.=-...........+.-|...|++
T Consensus 178 -~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 178 -VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred -EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 3456789999877541 111123577778999999999999999999999999633312333445666789999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (764)
Q Consensus 320 i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (764)
++|+++|.+|++||..+.+.+|.+.+++. +-++
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP---------------------------------------------- 289 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP---------------------------------------------- 289 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCc-cccc----------------------------------------------
Confidence 99999999999999999999999987762 1111
Q ss_pred ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccc---ccccccCc
Q 004270 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGE 476 (764)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~~h~~~ 476 (764)
.-.++|..+.+|||+.+.++...|+.|.+....+............. ......+-
T Consensus 290 ----------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 290 ----------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred ----------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 12388999999999999999999999999988766555544322211 11234556
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec------------CcceEEEEEeecCCEEEEEeC--------C
Q 004270 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------GCSLVKIVYHRVNGLLATVAD--------D 536 (764)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------------~~~i~~~~~s~~~~~la~~~~--------d 536 (764)
.+.++++|.-+.++-.+..|.|.+||+.+.+.+..+.. .-.+++++.+..|.++++.-. |
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 78899999778888999999999999988877665532 145778888888999988642 3
Q ss_pred --CeEEEEEccCCe----EEEE-eecCCCCeeEEEEcCC-Cc-EEEEEeCCCcEEEEEcCccc----------e--EEEE
Q 004270 537 --LVIRLFDVVALR----MVRK-FEGHTDRITDFCFSED-GK-WLLSSGMDGSLRIWDVILAR----------Q--IDAI 595 (764)
Q Consensus 537 --~~i~v~d~~~~~----~~~~-~~~h~~~i~~l~~s~d-g~-~l~s~s~dg~i~iwd~~~~~----------~--~~~~ 595 (764)
-.+++|-..... +... ...|...+...+|.+. .. ..++++.||.++||-+.+.+ + +..+
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 357788655432 2222 2358777766666543 23 78999999999999884322 1 1111
Q ss_pred eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 596 HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 596 ~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
+..++++++|+.||..|+.+..| +|.+|+...
T Consensus 508 -~k~~i~a~~fs~dGslla~s~~~--~Itiwd~~~ 539 (792)
T KOG1963|consen 508 -HKTPITALCFSQDGSLLAVSFDD--TITIWDYDT 539 (792)
T ss_pred -ccCcccchhhcCCCcEEEEecCC--EEEEecCCC
Confidence 34569999999999887776554 599999765
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.9e-23 Score=186.94 Aligned_cols=292 Identities=18% Similarity=0.254 Sum_probs=214.4
Q ss_pred ecccccceEEEEEe---CCEEEEEecCCcEEEEEccCCccccc--------c---eeeEecCCccccEEEEeCCCCCCEE
Q 004270 89 WSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLA--------P---VGHVKLDDKFTPTCIMHPDTYLNKV 154 (764)
Q Consensus 89 ~~~h~~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~p~~~~~~l 154 (764)
.+.|.+.|.++..+ |+++++|+.||.|.|||++....... . ...-..|.-.+.++.+-|-.. ..+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-GmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-GMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-cee
Confidence 45799999999974 99999999999999999987552110 0 111123334455566666553 578
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC---CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA---LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 155 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~---~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
.+++.|.++++||.++.+....|+- .+.|.+-++||- -.++|+|..+-.|++-|+.+|.....+.+| .+.|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAVE 195 (397)
T ss_pred ecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc-cCceEEEE
Confidence 8899999999999999999999886 678888888884 348899999999999999999999999876 88999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCc-eeeee-------------eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKR-RLQSV-------------IREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~-~~~~~-------------~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~ 297 (764)
|+|...++|++|+.||.|++||++.. .+... ...+|.+.|.+++|..++.++++++.|..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99999999999999999999999754 11111 12478899999999999999999999999999988
Q ss_pred cCCCCCceeeEeccCCCC---CCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 298 DTTDGDPRLLRFRSGHSA---PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
..+....+..... .|.. .-..+. +.+...++---.++.+.++++-.+..
T Consensus 276 ~~G~ntl~~~g~~-~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~-------------------------- 327 (397)
T KOG4283|consen 276 ESGRNTLREFGPI-IHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF-------------------------- 327 (397)
T ss_pred ccCcccccccccc-cccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE--------------------------
Confidence 7664432221111 1111 111112 22333343334456666666544332
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
++.|+. |...+.+.++.|+=+...+|..|+.+..|..
T Consensus 328 ---------------------------ir~l~~---------------h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 328 ---------------------------VRRLST---------------HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ---------------------------EEeeec---------------ccceeeEEeecCchhhhhccccCCccccccc
Confidence 233332 2367888889999899999999999999976
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3.3e-23 Score=196.75 Aligned_cols=304 Identities=20% Similarity=0.277 Sum_probs=234.5
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCC--EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH 328 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~ 328 (764)
+|+.+-......+ -+.+.|++++|+|..+ ++++|..-|.|-+||+++......-+..+..|..+|.++.|+| +...
T Consensus 171 l~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 171 LDLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence 4444445555566 6889999999999765 7888888999999999765555556677789999999999999 6678
Q ss_pred EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (764)
+++.+.||++++-|+........++..
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~~----------------------------------------------------- 276 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSLD----------------------------------------------------- 276 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhcC-----------------------------------------------------
Confidence 999999999999998765432222110
Q ss_pred ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-C
Q 004270 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T 487 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~ 487 (764)
........+.++.+...++.|..=|...+||++++....... .-|...|++++++|.. .
T Consensus 277 -------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 277 -------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKKITSVALNPVCPW 336 (498)
T ss_pred -------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcccceeecCCCCch
Confidence 112456677888888888888888899999998876633322 3788899999999965 6
Q ss_pred EEEEEeCCCeEEEEECCCCC-----eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc----CCeEEEEeecCCC
Q 004270 488 LMISAGYHGDIKVWDFKGRD-----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV----ALRMVRKFEGHTD 558 (764)
Q Consensus 488 ~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~----~~~~~~~~~~h~~ 558 (764)
+++|++.|++.+|||++.-. .+..+.+...|.+..|||.+..|++.+.|..|+|||.. ...+...+. |..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 78999999999999987532 35667777999999999999999999999999999983 334444443 321
Q ss_pred ------CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc--eEE-EEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 559 ------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITA-LSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 559 ------~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--v~~-l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
......|.||..++++|-.-..|-|+|-..++++..+..+.. |.+ ..|+|-+..+++|+.-++-|+||..+
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 133467999999999999988999999998888888755443 444 58999998677776665569999876
Q ss_pred c
Q 004270 630 C 630 (764)
Q Consensus 630 ~ 630 (764)
.
T Consensus 496 ~ 496 (498)
T KOG4328|consen 496 K 496 (498)
T ss_pred C
Confidence 3
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=201.46 Aligned_cols=275 Identities=13% Similarity=0.208 Sum_probs=209.2
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (764)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~ 218 (764)
.+..++|.|+| ..++.+.. ..+.+||.+.|.+++++++|.+.|.|++|+.+|+.+|+|+.|..|.+|+.+ ....
T Consensus 14 ci~d~afkPDG--sqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDG--TQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGI 87 (1081)
T ss_pred chheeEECCCC--ceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccce
Confidence 56778999999 66766644 459999999999999999999999999999999999999999999999854 3334
Q ss_pred EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
++-.|...|.|+.|.|-.. .|++++- ...-+|..+.....+. .....+.+++|..||.+++.|-.+|+|.+-+-.
T Consensus 88 LkYSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred eeeccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 4455688999999999888 7888774 4577898765543322 235678899999999999999999999987322
Q ss_pred CCCCCceeeEeccCCCCCCeeEEEecCC-----CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 299 TTDGDPRLLRFRSGHSAPPLCIRFYANG-----RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~-----~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
......+....|...+|.+++|+|.. ..+++.....++.++.+...
T Consensus 163 --gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--------------------------- 213 (1081)
T KOG1538|consen 163 --GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--------------------------- 213 (1081)
T ss_pred --CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------------------------
Confidence 22223344445788999999999943 24445555555555544321
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
.++ ....-.....|+.+-++|.++++|+.++.+.+|.-
T Consensus 214 -------------------------------------~Ig-----k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 214 -------------------------------------QIG-----KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred -------------------------------------eec-----ccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 111 01112255678899999999999999999999975
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
. |....++. .....|..++..|++++++.|+.||+|-.|++-
T Consensus 252 ~-GvrLGTvg--------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 252 D-GVRLGTVG--------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred c-CeEEeecc--------ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 4 44555543 466789999999999999999999999999863
No 142
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=5.3e-24 Score=202.67 Aligned_cols=243 Identities=17% Similarity=0.264 Sum_probs=197.9
Q ss_pred CCCCcceEEEEEeCC-eEEEEE---CCeEEEEecCce------------EEEecccccceEEEEE---eCCEEEEEecCC
Q 004270 53 PQLPKKIRALASYRD-YTFAAY---GNHIAVVKRAHQ------------VATWSRHSAKVNLLLL---FGEHILSIDIDG 113 (764)
Q Consensus 53 ~~~~~~I~~~~~~~~-~~~~a~---g~~i~vw~~~~~------------~~~~~~h~~~v~~l~~---~g~~l~s~~~dg 113 (764)
..|++.|..+..-|. -..+|+ ++.|+|||..+. -.++.||...=.++++ ...+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 457888888887777 344554 344999985321 1268899998778887 366899999999
Q ss_pred cEEEEEccCCcc---cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcCCCCCeEEEE
Q 004270 114 NMFIWAFKGIEE---NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCV 188 (764)
Q Consensus 114 ~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~i~~~~ 188 (764)
+|++||+..... ...+...+..|...+..++|||-.. +.+.+++.|+.+.|||.+ +.++.+..++|.+.|.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 999999987655 2445667788899999999999875 678889999999999999 6677888899999999999
Q ss_pred EcCC-CCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc---------
Q 004270 189 SSPA-LDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--------- 257 (764)
Q Consensus 189 ~sp~-~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--------- 257 (764)
|+|- +..||+|+.|++|.+||+++-. .+.++.. |...|.++.|+|+...+||+++.|+.+.+||+..-
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 9995 4688999999999999999765 4555554 58999999999999889999999999999998643
Q ss_pred -----eeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEec
Q 004270 258 -----RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFD 298 (764)
Q Consensus 258 -----~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~ 298 (764)
+++..- .||...|..+.|+|+.+ .+++++.|+.+.||.+.
T Consensus 359 ~dgppEllF~H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIH-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEe-cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 122333 48999999999999988 56788899999999764
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=206.41 Aligned_cols=385 Identities=16% Similarity=0.167 Sum_probs=259.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeE------EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE-EeccCC
Q 004270 152 NKVIVGSQEGSLQLWNISTKKK------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMR 224 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~------~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~ 224 (764)
..|+++..+|.|.++|.+.... ++.+..|...|..+.|.|....|++++.|.++++||+++.+.... +..+|.
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 6789999999999999765432 355678999999999999777899999999999999999888766 233458
Q ss_pred CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee---------------------------eeeeecccccCeeE---E
Q 004270 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---------------------------QSVIREAHDNAIIS---L 274 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~---------------------------~~~~~~~h~~~v~~---l 274 (764)
+.|.+++|.|+...++++|+.||.|.|||++-... +..- .+|...|.+ +
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTV 223 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeeeeEE
Confidence 99999999999998999999999999999863220 0001 134455555 5
Q ss_pred EEecCCCEEEEEcC-CCcEEEEEecCCCCCc----eeeEeccCC---CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecc
Q 004270 275 HFFANEPVLMSASA-DNSIKMWIFDTTDGDP----RLLRFRSGH---SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 275 ~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~----~~~~~~~~h---~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~ 346 (764)
.+..|...|+++|. |+.|+|||+....... .....+..| ...+.++.....|.+|+..+.|++|..|++...
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 66678889999988 9999999998764221 222222233 345677777778888888888999999998754
Q ss_pred cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCC
Q 004270 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 426 (764)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 426 (764)
........ ... .....
T Consensus 304 s~sP~~~~-------------------------sg~---------------------------------------~~~sf 319 (720)
T KOG0321|consen 304 SISPVAEF-------------------------SGK---------------------------------------LNSSF 319 (720)
T ss_pred CcCchhhc-------------------------cCc---------------------------------------cccee
Confidence 32211100 000 00122
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCC
Q 004270 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKG 505 (764)
Q Consensus 427 v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~ 505 (764)
-..-..+|++.++++|+.++..++|.+.+...-.... .+|.-.|++++|.|.. .-+++++.|..+++|++..
T Consensus 320 ~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 320 YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------hCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 3344679999999999999999999998876655443 5999999999998843 4578889999999999865
Q ss_pred CCee--------------eeEecC-cc-------------------------eEEEEEeecCCEEEEEe----CCCeEEE
Q 004270 506 RDLK--------------SRWEVG-CS-------------------------LVKIVYHRVNGLLATVA----DDLVIRL 541 (764)
Q Consensus 506 ~~~~--------------~~~~~~-~~-------------------------i~~~~~s~~~~~la~~~----~d~~i~v 541 (764)
+-.. ..++.+ .. ...++..|.+.-...+. ..-.|..
T Consensus 393 ~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR~~~~r~~ssP~s~a~~~s~~s~~~~~~~t~qt~~i~~ 472 (720)
T KOG0321|consen 393 GLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPREGMNRISSSPVSLACSPSGASDDCGYGVTDQTSGIVV 472 (720)
T ss_pred chhhccccccchhhhhhhhhhhccccccccccccccccccchhhhccccccCccchhcCcCCcccccCCCccccccccee
Confidence 4111 111111 01 11122222222222111 1112333
Q ss_pred EEccCCeEEEE--eecCCCCeeEEEEcCCCcEEEEEeC-----------CCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270 542 FDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSSGM-----------DGSLRIWDVILARQIDAIHVDVSITALSLSP 608 (764)
Q Consensus 542 ~d~~~~~~~~~--~~~h~~~i~~l~~s~dg~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp 608 (764)
.+....+.... -.+|...|+...+++.++.+++.+- ++.+++|...........+.......+.|+|
T Consensus 473 ~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar~~~r~ifs~ 552 (720)
T KOG0321|consen 473 FPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREARKKSRLIFSP 552 (720)
T ss_pred cchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhcccccccceeccC
Confidence 33332222211 1246777888888888878888887 8899999877655544443333455566665
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.3e-24 Score=214.87 Aligned_cols=286 Identities=20% Similarity=0.305 Sum_probs=219.4
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc----eEEEEeccC--CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~--~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~ 255 (764)
....++...++-..|++++. ..+.||.+.... +...+.... .-.+..+.|..--.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34566677788888888776 467777765332 222221111 12345677876555699999999999999998
Q ss_pred C---ceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEE
Q 004270 256 K---RRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL 330 (764)
Q Consensus 256 ~---~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~ 330 (764)
. .+.+..+. .|...++++.|++-.+ +|++||.||+|++||++... -...+.+....|..+.|+| .+..++
T Consensus 119 k~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----S~~t~~~nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 119 KSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----SKSTFRSNSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred ccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeeccc----ccccccccchhhhceeeccCCCceEE
Confidence 7 45556666 8999999999998664 89999999999999998774 3444557888999999999 778889
Q ss_pred EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (764)
Q Consensus 331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (764)
++...|.+++||++......
T Consensus 194 s~~dsG~lqlWDlRqp~r~~------------------------------------------------------------ 213 (839)
T KOG0269|consen 194 SIHDSGYLQLWDLRQPDRCE------------------------------------------------------------ 213 (839)
T ss_pred EecCCceEEEeeccCchhHH------------------------------------------------------------
Confidence 99999999999987543211
Q ss_pred eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE
Q 004270 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (764)
..+ .+|.+.|.++.|+|++.+||
T Consensus 214 -------------------------------------------------~k~--------~AH~GpV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 214 -------------------------------------------------KKL--------TAHNGPVLCLNWHPNREWLA 236 (839)
T ss_pred -------------------------------------------------HHh--------hcccCceEEEeecCCCceee
Confidence 111 38999999999999999999
Q ss_pred EEeCCCeEEEEECCCCC--eeeeEecCcceEEEEEeecCCEE-EEEe--CCCeEEEEEccCCe-EEEEeecCCCCeeEEE
Q 004270 491 SAGYHGDIKVWDFKGRD--LKSRWEVGCSLVKIVYHRVNGLL-ATVA--DDLVIRLFDVVALR-MVRKFEGHTDRITDFC 564 (764)
Q Consensus 491 s~~~dg~v~iwd~~~~~--~~~~~~~~~~i~~~~~s~~~~~l-a~~~--~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~ 564 (764)
|||.|+.|+|||..+.+ .+.++....++.++.|-|+..+. |+++ .|..|+|||+...- +..++..|+..++.++
T Consensus 237 TGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~ 316 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIA 316 (839)
T ss_pred ecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccccee
Confidence 99999999999998664 45566666999999999987754 4443 47899999998653 4667889999999999
Q ss_pred EcC-CCcEEEEEeCCCcEEEEEcCccc
Q 004270 565 FSE-DGKWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 565 ~s~-dg~~l~s~s~dg~i~iwd~~~~~ 590 (764)
|-. |-..|.+++.||+|..-.++++.
T Consensus 317 W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 317 WDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ccCCCceeeEeecCccHHHHhhhhccc
Confidence 965 55678899999998877666543
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=3.3e-22 Score=198.01 Aligned_cols=486 Identities=15% Similarity=0.166 Sum_probs=305.8
Q ss_pred ceEEEEEeCC--eEEEEECCeEEEEec--CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCccccccee
Q 004270 58 KIRALASYRD--YTFAAYGNHIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVG 131 (764)
Q Consensus 58 ~I~~~~~~~~--~~~~a~g~~i~vw~~--~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~ 131 (764)
.|..+||-|| ...+|.|+.+.+||. |..+.+++||++.|.++++ ||+.++||+.|..|.+|.-.-. .
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-------G 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-------G 86 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-------c
Confidence 7899999999 456788999999996 6678889999999999998 8999999999999999975432 2
Q ss_pred eEec-CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 004270 132 HVKL-DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV 210 (764)
Q Consensus 132 ~~~~-~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~ 210 (764)
.++. |...+.++.|+|-. ..+++++-. ..-+|..... .+...+. ...|.+++|..||++++.|-.+|+|.|-|-
T Consensus 87 ~LkYSH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK-~V~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQK-SVSKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred eeeeccCCeeeEeecCchH--HHhhhcchh-hccccChhhh-hHHhhhh-heeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 3333 45666667799998 678877664 4788986433 3333332 567899999999999999999999999974
Q ss_pred cCCceEEEEe--ccCCCCEEEEEEeeCCC----CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE
Q 004270 211 RYDEELVTFT--HSMRGAVTALAFSSDGQ----PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 284 (764)
Q Consensus 211 ~~~~~~~~~~--~~~~~~v~~l~fs~d~~----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 284 (764)
++++...+. ++.+.+|.+++|+|... .++++.....++.++.+. |+.+..-+ .-.-...|+.+.++|.+++
T Consensus 162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEEE
Confidence 455544444 34478999999998642 378888888999999874 55554433 3445678999999999999
Q ss_pred EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHH-hh
Q 004270 285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA-RK 363 (764)
Q Consensus 285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~ 363 (764)
.|+.|+.+++|.-+. ..+.+.......|..++..|+++.++.|+.||++..|++...............++. ..
T Consensus 239 iGGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtD 313 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTD 313 (1081)
T ss_pred EccCCCceEEEeecC-----eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHH
Confidence 999999999994322 455566567789999999999999999999999999998654332211111000000 00
Q ss_pred ccchhhhhccCceeEeeecccc--cccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE
Q 004270 364 LKMKEEELKLKPVIAFDCAEIR--ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 441 (764)
.- ...+....-..+.+...- -.-+.+-++.. -...+.+|...+.............-.....+--.--+++.++.
T Consensus 314 Vi--vQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQ-Lpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl 390 (1081)
T KOG1538|consen 314 VI--VQHLITEQKVRIKCKDLVKKIAIYRNRLAVQ-LPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL 390 (1081)
T ss_pred HH--HHHHhhcceeeeeHHHHHHHHHhhhhhheec-ccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE
Confidence 00 000000000000000000 00000001110 11234444443322211111000000011111112223444444
Q ss_pred EecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE--CC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecCcce
Q 004270 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518 (764)
Q Consensus 442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i 518 (764)
. .+..+..+|...-..+.-. ..+-|+-+.+ -| ...-|+.|-.+|.|.--=+++.-++........|
T Consensus 391 C-qekrLqClDF~Gvk~ReW~----------M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~~~tAv 459 (1081)
T KOG1538|consen 391 C-QEKRLQCLDFSGVKEREWQ----------MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLKQATAV 459 (1081)
T ss_pred E-cccceeeecccchhhhhhh----------HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheeccccee
Confidence 3 5666777776543222111 1111111111 12 2356777888887654445555555555566889
Q ss_pred EEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEE
Q 004270 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLR 582 (764)
Q Consensus 519 ~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~ 582 (764)
.|+.++...+.||+..+.++..++|+.+++.+..- ..+++++|+... .+|+..+. |.+.
T Consensus 460 rClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE----pg~nSV~wNT~~E~MlcfT~~-g~L~ 519 (1081)
T KOG1538|consen 460 RCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE----PGANSVAWNTQCEDMLCFTGG-GYLN 519 (1081)
T ss_pred EEeeccCCcceEEEEccCCeEEEEEccCCceEeec----CCCceEEeeccccceEEEecC-CceE
Confidence 99999999999999999999999999999876543 357889997643 34443332 4443
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-22 Score=208.47 Aligned_cols=276 Identities=13% Similarity=0.179 Sum_probs=223.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC-ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
.|....+.++|.|+|.+|.+++.||.|++|+.... +....+.. +...|.+++.. +. .|++|+.+++|.+|.+.++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~--s~-~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACY--SN-HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeec--cc-ceEEeeccceEEEeeCCCC
Confidence 57888999999999999999999999999998776 33333332 35677777764 33 7899999999999999988
Q ss_pred eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
..-..+. -..-+++.++|+.+|++++.||.|-.|++-+.+.. ...+.+.+|.++|.++.|+|++++|++.+.||.
T Consensus 87 ~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 87 EEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred Cccceee-eeeccceEEEEecCCcEEEeecCceeEEEEecccc----chheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 7765555 56678999999999999999999999999988766 456667899999999999999999999999999
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
|++|++.++.....+..-.. ...+
T Consensus 162 v~iw~~~~~~~~~tl~~v~k------------------~n~~-------------------------------------- 185 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDK------------------DNEF-------------------------------------- 185 (933)
T ss_pred EEEEEcccchhhhhcccCCc------------------cccc--------------------------------------
Confidence 99999987766555432100 0000
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 497 (764)
.....+..++|+|+|..+++...++.|.+|+..+......+.. ..+...+..+.|+|+|+|||+++.||.
T Consensus 186 ----~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~------~~~ss~~~~~~wsPnG~YiAAs~~~g~ 255 (933)
T KOG1274|consen 186 ----ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD------KLSSSKFSDLQWSPNGKYIAASTLDGQ 255 (933)
T ss_pred ----cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc------cccccceEEEEEcCCCcEEeeeccCCc
Confidence 0125677899999999999999999999999999988887763 345555999999999999999999999
Q ss_pred EEEEECCCCCeeeeEecCcceEEEEEeecCCEEEE
Q 004270 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532 (764)
Q Consensus 498 v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 532 (764)
|.|||.++... ......|.+++|.|+.+-+-.
T Consensus 256 I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 256 ILVWNVDTHER---HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred EEEEecccchh---ccccceeEEEecCCCCCeeEE
Confidence 99999998222 333478999999998764433
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1e-22 Score=193.43 Aligned_cols=304 Identities=16% Similarity=0.167 Sum_probs=233.4
Q ss_pred EeCCCCeEEEEEcCCCCCeEEEEEcCCC--CEEEEEEcCCeEEEEEccCC---c-eEEEEeccCCCCEEEEEEeeCCCCE
Q 004270 166 WNISTKKKLYEFKGWGSSISSCVSSPAL--DVVAVGCSDGKIHVHNVRYD---E-ELVTFTHSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 166 wd~~~~~~~~~~~~h~~~i~~~~~sp~~--~~la~g~~dg~i~iwd~~~~---~-~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (764)
+|+.+-......+.+.++|++++|+|.. +++|+|..-|.|-+||+.+. . .+..+ ..|.++|.+|.|+|.+...
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChhh
Confidence 4555556666777889999999999975 58899999999999999522 2 23333 4458999999999988778
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeec-ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270 240 LASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (764)
+++.+.||+|++-|++++.....+.. .....+.++.|+.+.+.++.+..=|...+||.++.... ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~---~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE---YENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc---chhhhhhhcccc
Confidence 99999999999999988754444331 23456778899988888888888789999999887643 333456888999
Q ss_pred eEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270 319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (764)
Q Consensus 319 ~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (764)
+++++| ...+|+|++.|++.+|||++.-....+
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------------------------------------- 360 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------------------------------------- 360 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCC----------------------------------------------
Confidence 999999 667899999999999999864321110
Q ss_pred CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (764)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (764)
| + + ....|...|
T Consensus 361 ------------------------------------p----~-------------------l---------st~~HrrsV 372 (498)
T KOG4328|consen 361 ------------------------------------P----F-------------------L---------STLPHRRSV 372 (498)
T ss_pred ------------------------------------c----c-------------------e---------eccccccee
Confidence 0 0 0 013799999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEC----CCCCeeeeEecC------cceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270 478 VGVACDSTNTLMISAGYHGDIKVWDF----KGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 478 ~~l~~~~~~~~l~s~~~dg~v~iwd~----~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~ 547 (764)
.+..|||.+-.|++.+.|..|+|||. ..-.+..++.|. -......|.|+..++++|-.-..|-|+|-..+
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 99999998888999999999999998 344566666654 23456789999999999999999999999999
Q ss_pred eEEEEeecCCC-CeeE-EEEcCCCcEEEEE-eCCCcEEEEEcC
Q 004270 548 RMVRKFEGHTD-RITD-FCFSEDGKWLLSS-GMDGSLRIWDVI 587 (764)
Q Consensus 548 ~~~~~~~~h~~-~i~~-l~~s~dg~~l~s~-s~dg~i~iwd~~ 587 (764)
+.+..+..... .|.+ ..|+|-+.-+++| +..|.|+||--+
T Consensus 453 q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 453 QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 98888765543 4555 4799988745544 467888888644
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.7e-23 Score=200.78 Aligned_cols=317 Identities=14% Similarity=0.184 Sum_probs=236.7
Q ss_pred cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEe
Q 004270 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV 343 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~ 343 (764)
.+|.+.|.++...|.|.+|++|+.||+|++|.+.++ ++++.. ...+.|.|++|+|.+. .++..+.+..+.+.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----Rcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----RCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----eEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 499999999999999999999999999999999887 677665 3456899999999553 3334444444666655
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
.-+............. ..| .-...+..+..|.-........-+.....+
T Consensus 472 ~~G~~~e~~~t~ell~-------------~~~------------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~ 520 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLA-------------SAP------------------NESEPDAAVVTWSRASLDELEKGVCIVIKH 520 (733)
T ss_pred cccchhhhcchhhhhh-------------cCC------------------CccCCcccceeechhhhhhhccceEEEEec
Confidence 4432211111000000 000 001223355566554332222222333356
Q ss_pred CCCeEEEEEccCCCEEEEEecCC---cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270 424 PTAVKACTISACGNFAVLGTAGG---WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 500 (764)
...|+.+.|+..|.||++...++ .|.++++........|. ...+.|.++.|+|...+|+.++. ..|++
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--------kskG~vq~v~FHPs~p~lfVaTq-~~vRi 591 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--------KSKGLVQRVKFHPSKPYLFVATQ-RSVRI 591 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh--------hcCCceeEEEecCCCceEEEEec-cceEE
Confidence 78999999999999999887654 78889888776665553 56788999999999998888876 78999
Q ss_pred EECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCC-eEEEEeecCCCCeeEEEEcCCCcEEEEEeCC
Q 004270 501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578 (764)
Q Consensus 501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d 578 (764)
||+..+.++..+... ..|..++.+|.|.-|++|+.|+.+..||+.-. ++.+++.-|...+++++|++.-.++++|+.|
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 999998887777655 78999999999999999999999999999755 6778899999999999999999999999999
Q ss_pred CcEEEEE------cCccc---eEEEEeeCCc-----eEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 579 GSLRIWD------VILAR---QIDAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 579 g~i~iwd------~~~~~---~~~~~~~~~~-----v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
|++.|+- +-.+. ++..+++|.. |..+.|+|...+|.++++|+ +|++|.
T Consensus 672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~-tirlfT 733 (733)
T KOG0650|consen 672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG-TIRLFT 733 (733)
T ss_pred CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc-eEEeeC
Confidence 9999984 32222 3455565542 78889999999999999999 699984
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.8e-22 Score=180.02 Aligned_cols=256 Identities=16% Similarity=0.250 Sum_probs=196.7
Q ss_pred eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec--CCCEEEEEeCCCcEE
Q 004270 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFR 339 (764)
Q Consensus 262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~i~ 339 (764)
.+..+|..-|.++.|.+-|+.+++++.|++++|||++...+.+.+....+.|.+.|..+.|.+ -|+.+++++.|+++.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 444589999999999999999999999999999999888899999999999999999999976 689999999999999
Q ss_pred EEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC
Q 004270 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (764)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 419 (764)
+|.-........ -+
T Consensus 87 iWEE~~~~~~~~--------------------------------------------------~~---------------- 100 (361)
T KOG2445|consen 87 IWEEQEKSEEAH--------------------------------------------------GR---------------- 100 (361)
T ss_pred eeeecccccccc--------------------------------------------------cc----------------
Confidence 997431100000 00
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC--CCCEEEEEeCCCe
Q 004270 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYHGD 497 (764)
Q Consensus 420 ~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~ 497 (764)
..+. +..+ ....+.|+.+.|.| -|-.+++++.||.
T Consensus 101 -----~Wv~------------------------------~ttl--------~DsrssV~DV~FaP~hlGLklA~~~aDG~ 137 (361)
T KOG2445|consen 101 -----RWVR------------------------------RTTL--------VDSRSSVTDVKFAPKHLGLKLAAASADGI 137 (361)
T ss_pred -----eeEE------------------------------EEEe--------ecCCcceeEEEecchhcceEEEEeccCcE
Confidence 0000 0011 25567788888888 4678899999999
Q ss_pred EEEEECCCC------CeeeeEe--------cCcceEEEEEeec---CCEEEEEeCC-----CeEEEEEccCC----eEEE
Q 004270 498 IKVWDFKGR------DLKSRWE--------VGCSLVKIVYHRV---NGLLATVADD-----LVIRLFDVVAL----RMVR 551 (764)
Q Consensus 498 v~iwd~~~~------~~~~~~~--------~~~~i~~~~~s~~---~~~la~~~~d-----~~i~v~d~~~~----~~~~ 551 (764)
+|||+.... .+..+++ ...+..|+.|+|. ..+||+|+.+ +.+.||....+ ..+.
T Consensus 138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence 999986543 3333333 3466778889873 4589999876 57888876543 3466
Q ss_pred EeecCCCCeeEEEEcCCC----cEEEEEeCCCcEEEEEcCcc--------------------ceEEEEeeCC-ceEEEEE
Q 004270 552 KFEGHTDRITDFCFSEDG----KWLLSSGMDGSLRIWDVILA--------------------RQIDAIHVDV-SITALSL 606 (764)
Q Consensus 552 ~~~~h~~~i~~l~~s~dg----~~l~s~s~dg~i~iwd~~~~--------------------~~~~~~~~~~-~v~~l~~ 606 (764)
++.+|+.+|++++|.|+- ..||+++.|| |+||.+... +.+..+..|. .|..+.|
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 788999999999999963 4799999999 999998731 1334444555 6999999
Q ss_pred cCCCCeEEEEEeCCCeEEEEec
Q 004270 607 SPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 607 sp~g~~lat~~~d~~~i~lW~~ 628 (764)
+-.|..|++++.|| .|++|.-
T Consensus 297 NmtGtiLsStGdDG-~VRLWka 317 (361)
T KOG2445|consen 297 NMTGTILSSTGDDG-CVRLWKA 317 (361)
T ss_pred eeeeeEEeecCCCc-eeeehhh
Confidence 99999999999999 5999974
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=1e-19 Score=195.95 Aligned_cols=372 Identities=26% Similarity=0.457 Sum_probs=291.3
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEE-eeCCCCEEEE-EeCCCcEEE
Q 004270 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAF-SSDGQPLLAS-GASSGVISI 251 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~f-s~d~~~~l~s-g~~dg~i~i 251 (764)
..+..|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++. +..++.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3556789999999999999999999999999999999887 666666643346777777 7777634444 344899999
Q ss_pred EECCC-ceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-E
Q 004270 252 WNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-H 328 (764)
Q Consensus 252 wd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~ 328 (764)
||... ......+. .|...|..+.|+|++..+++++. |+.+++|+.... ..+..+.+|...+.+++|+|++. .
T Consensus 139 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 139 WDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred EEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceE
Confidence 99988 67777777 89999999999999998888886 999999988763 56667778999999999999987 5
Q ss_pred EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (764)
+++++.|+.+++||...+.....
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~--------------------------------------------------------- 236 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRS--------------------------------------------------------- 236 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEee---------------------------------------------------------
Confidence 55559999999997652221110
Q ss_pred ceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc-cceecCccccccccccCcEEEEEECCCCC
Q 004270 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (764)
....|.... ...+++++.++++++.++.+++|+...... ...+ ..|...+.++.++|++.
T Consensus 237 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 237 ----------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred ----------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------ecCCccEEEEEECCCCC
Confidence 111222332 228999999999999999999999987765 2222 27889999999999888
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEe--cC-cceEEEEEeecCCEEEEE-eCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270 488 LMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (764)
Q Consensus 488 ~l~s~~~dg~v~iwd~~~~~~~~~~~--~~-~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l 563 (764)
.+++++.|+.+++|+..+........ .+ ..+..+.+.+++..++.+ ..|+.+.+|+............+. .+..+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 376 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV 376 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence 88889999999999998887766665 44 458888883332556555 678999999999887333333232 28899
Q ss_pred EEcCCCcEEEE-EeCCCcEEEEEcCccceEEEEeeC-CceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 564 CFSEDGKWLLS-SGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 564 ~~s~dg~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
.+++ ....+. +..++.+.+|+............. ..+....+++++..+++++.+. .+.+|+...
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 443 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN-TIRLWDLKT 443 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC-cEEEEeccC
Confidence 9999 544444 688999999999999888888777 7899999999999999988777 599999876
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=200.85 Aligned_cols=318 Identities=17% Similarity=0.179 Sum_probs=218.0
Q ss_pred EEEEEee--CCCCEEEEEeCCCcEEEEECCCceee------eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270 228 TALAFSS--DGQPLLASGASSGVISIWNLEKRRLQ------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (764)
Q Consensus 228 ~~l~fs~--d~~~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (764)
.+..|++ +.+++|+.+..+|.|.++|.+..... ... .+|.+.|..+.|.|....|++++.|.++++||+..
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 3456654 45579999999999999998665332 223 38999999999999888999999999999999987
Q ss_pred CCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270 300 TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (764)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (764)
..... .....||...|.+++|.+ +...|++|+.||.+.+||++-......... ............ .|.
T Consensus 132 s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~------~~~~~~~~n~~p-tps-- 200 (720)
T KOG0321|consen 132 SRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF------DNRIYGRHNTAP-TPS-- 200 (720)
T ss_pred ceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH------hhhhhccccCCC-CCC--
Confidence 63322 223679999999999999 667889999999999999976541111000 000000000000 000
Q ss_pred eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEE---EEEccCCCEEEEEec-CCcEEEEECc
Q 004270 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA---CTISACGNFAVLGTA-GGWIERFNLQ 454 (764)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~g~~l~~g~~-~g~i~i~~~~ 454 (764)
... .........+...+.+ +.+..|...|++++. |+.|++||+.
T Consensus 201 -------------------------------kp~-~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 201 -------------------------------KPL-KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred -------------------------------chh-hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 000 0000111112233333 555667778887776 9999999998
Q ss_pred CCcccceecCccccccccc---cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--eeeeEecC---cceEEEEEeec
Q 004270 455 SGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---CSLVKIVYHRV 526 (764)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~---~~i~~~~~s~~ 526 (764)
..................| ...++++..+..|.+|.+.+.|+.|++|++.+.. ++..+.+. .--..-..+||
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 7655443332222222233 4468888999989999888889999999987543 33333332 22234567899
Q ss_pred CCEEEEEeCCCeEEEEEccCCeE-EEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCcc
Q 004270 527 NGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA 589 (764)
Q Consensus 527 ~~~la~~~~d~~i~v~d~~~~~~-~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~ 589 (764)
+.++++|+.|...++|.+.+.+. ...+.||...|++++|.|.. .-+++++.|.+++||++..+
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999999999987654 55678999999999998742 34777899999999999654
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-21 Score=177.19 Aligned_cols=254 Identities=15% Similarity=0.210 Sum_probs=201.2
Q ss_pred ecccccceEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 89 WSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 89 ~~~h~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
-.+|.+-|+++.|| |+++++|+.|++|+|||..+.......-.....|.+.+..+.+.+..|.+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 45899999999985 9999999999999999987766655556778889999999999999998999999999999999
Q ss_pred eCC---------CCeEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEccCCceEEEEe------------ccC
Q 004270 167 NIS---------TKKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEELVTFT------------HSM 223 (764)
Q Consensus 167 d~~---------~~~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~~~~~~~~~~------------~~~ 223 (764)
.=. .-....++....+.|+.+.|.|. |-.||+++.||.+|||+...--.+.... ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 641 11244566777899999999996 6689999999999999876433222221 122
Q ss_pred CCCEEEEEEeeCC--CCEEEEEeCC-----CcEEEEECCCc----eeeeeeecccccCeeEEEEecCC----CEEEEEcC
Q 004270 224 RGAVTALAFSSDG--QPLLASGASS-----GVISIWNLEKR----RLQSVIREAHDNAIISLHFFANE----PVLMSASA 288 (764)
Q Consensus 224 ~~~v~~l~fs~d~--~~~l~sg~~d-----g~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~ 288 (764)
..+..|+.|+|.. +.+||.|+.+ +.+.||....+ ..+..+. +|..+|++++|.|+- ..|++++.
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeec
Confidence 4578899999753 3478888765 57889876544 2344555 899999999999963 38999999
Q ss_pred CCcEEEEEecCC----------------CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 289 DNSIKMWIFDTT----------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 289 d~~i~vw~~~~~----------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
|| |+||.+... +-....+..+.+|.+.|..++|+-.|..|.+.|.||.+|+|...
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99 999998741 11123455678999999999999999999999999999999754
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.6e-23 Score=208.92 Aligned_cols=283 Identities=16% Similarity=0.241 Sum_probs=212.6
Q ss_pred CcceEEEEEeCCe-EEEEECCe-EEEEecCce-----E-EEecccc---cceEEEE---EeCCEEEEEecCCcEEEEEcc
Q 004270 56 PKKIRALASYRDY-TFAAYGNH-IAVVKRAHQ-----V-ATWSRHS---AKVNLLL---LFGEHILSIDIDGNMFIWAFK 121 (764)
Q Consensus 56 ~~~I~~~~~~~~~-~~~a~g~~-i~vw~~~~~-----~-~~~~~h~---~~v~~l~---~~g~~l~s~~~dg~v~vWd~~ 121 (764)
+..+.+++..++. ..+..|.. +.+|..... . ....+.. -.+..+. ++.++|++++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 5667788888883 33344444 666653211 1 1111111 1122233 368899999999999999998
Q ss_pred CCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEE
Q 004270 122 GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGC 200 (764)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~ 200 (764)
.... ...+..+..|...+..+.||+... +.|++|+.||.|++||++..+-..++.+....|..+.|+|. +..++++.
T Consensus 119 k~~r-nk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIR-NKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred cccc-chhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 7311 111445666778888888998876 79999999999999999999999999999999999999995 67899999
Q ss_pred cCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270 201 SDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (764)
Q Consensus 201 ~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~ 279 (764)
..|.+++||++... ...++.. |.++|.|+.|+|++. +||+|+.|+.|+|||+.+.+...........+|..+.|-|.
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~A-H~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTA-HNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred CCceEEEeeccCchhHHHHhhc-ccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 99999999998654 4555555 499999999999887 99999999999999998765433333235678999999998
Q ss_pred CC-EEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeec
Q 004270 280 EP-VLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 280 ~~-~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~ 345 (764)
.+ .|++++ .|-.|+|||+..+- .+...+..|...++.++|.. |...+.+++.||++..-.+..
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ccchhhhhhccccceEEEEeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 76 556655 48899999997652 45667789999999999976 566788999999876554443
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.2e-22 Score=192.67 Aligned_cols=292 Identities=14% Similarity=0.223 Sum_probs=228.4
Q ss_pred EEcCCeEEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeeEEE
Q 004270 199 GCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLH 275 (764)
Q Consensus 199 g~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~ 275 (764)
++....+++||+...+....+.++. ...+.++.|.......+++.+.|..+++|.-... +....-. .....-.|++
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~ 86 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVA 86 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHh
Confidence 3344579999998776655555332 2348899998766423334456778899974332 1111111 1222334444
Q ss_pred EecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccch
Q 004270 276 FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR 355 (764)
Q Consensus 276 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 355 (764)
......++++|+..+.|++||+... .+.+.+.+|...|+++.|.-...+|++++..|.|.+..+.++....++..
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~- 161 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI- 161 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-
Confidence 4445579999999999999999855 67888899999999999999999999999999999999887765544432
Q ss_pred hhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC
Q 004270 356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435 (764)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 435 (764)
+....++-+.+++.
T Consensus 162 ------------------------------------------------------------------~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 162 ------------------------------------------------------------------DSGQSVRLLRYSPS 175 (673)
T ss_pred ------------------------------------------------------------------CCCCeEEEeecccc
Confidence 11245667888887
Q ss_pred CCE-EEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEe
Q 004270 436 GNF-AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWE 513 (764)
Q Consensus 436 g~~-l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~ 513 (764)
.++ |.+++.+|.|.+||++...+...+. ..|..+..+|+|+|.+ .+|++.|.|..|.+||....+....+.
T Consensus 176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~-------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQGMSPIFHAS-------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred cceeeEeeccCCeEEEEeccCCCcccchh-------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence 765 5577889999999999988888776 5899999999999965 677899999999999999999999999
Q ss_pred cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC-eEEEEeecCCCCeeEEEEcCCC
Q 004270 514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG 569 (764)
Q Consensus 514 ~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg 569 (764)
...+.+.++|+++|.+|++|...|.|..||++.. .++..+..|...|++++|-|.-
T Consensus 249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999999999999999999999865 5688899999999999997753
No 155
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.3e-24 Score=214.57 Aligned_cols=251 Identities=17% Similarity=0.259 Sum_probs=219.1
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCceEEE--ecccccceEEE
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQVAT--WSRHSAKVNLL 99 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~~~~--~~~h~~~v~~l 99 (764)
+..++..+..+..+++||.+... .|...+.|+..-....++++|+. +-+|..++.... +.+|..+|.++
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~~~------~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTREFV------AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccccceeeeeeccccccchhhh------hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 34556667777888899876632 36677788887666888888865 668887776443 89999999999
Q ss_pred EE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004270 100 LL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177 (764)
Q Consensus 100 ~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 177 (764)
.+ +...|++|+.+|+|++||++..+. ++++.+|......+.|||-+ .+.+.|+.|+.+.+||++...+.+.+
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeee
Confidence 98 477899999999999999998888 78888888888999999999 77899999999999999988999999
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
++|...|.+++|+|+|+++++|+.|..++|||+..|+.+..|..+ .+.+.++.|+|..- ++++|+.|+++++||+++.
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-cccccccccCchhh-hhccCCCCceeeeecccee
Confidence 999999999999999999999999999999999999999999876 88999999999877 9999999999999999999
Q ss_pred eeeeeeecccccCeeEEEEecCCCEEEEEcCCC
Q 004270 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADN 290 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 290 (764)
+.+.... .....|.++.|+|++..+++|..+.
T Consensus 229 e~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 229 EVISSGK-PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EEeeccC-CccCCceeeeecCCceeeecCchhh
Confidence 9888887 5688999999999999888876543
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=3.8e-19 Score=191.39 Aligned_cols=369 Identities=27% Similarity=0.506 Sum_probs=290.1
Q ss_pred cCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCC-CeEEEEE-cCCCC-EEEEEEc-CCeEEEEE
Q 004270 135 LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFKGWGS-SISSCVS-SPALD-VVAVGCS-DGKIHVHN 209 (764)
Q Consensus 135 ~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~-~i~~~~~-sp~~~-~la~g~~-dg~i~iwd 209 (764)
.+...+....+.+.+ ..++.++.++.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|+
T Consensus 63 ~~~~~i~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 140 (466)
T COG2319 63 GHEDSITSIAFSPDG--ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140 (466)
T ss_pred eccceEEEEEECCCC--cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence 355666777788888 678888899999999998887 7777777443 7777777 88887 5555444 89999999
Q ss_pred ccC-CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEE
Q 004270 210 VRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSA 286 (764)
Q Consensus 210 ~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~ 286 (764)
... ......+..+ ...|..++|+|++. .+++++. ++.+++|++..++.+..+. +|...|.+++|+|+++ .++++
T Consensus 141 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 141 LSTPGKLIRTLEGH-SESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred ecCCCeEEEEEecC-cccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEe
Confidence 998 6666666655 78899999999998 7777775 9999999999988888888 7999999999999998 55555
Q ss_pred cCCCcEEEEEecCCCCCceeeE-eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc-cccccchhhhHHHhhc
Q 004270 287 SADNSIKMWIFDTTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKL 364 (764)
Q Consensus 287 ~~d~~i~vw~~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~ 364 (764)
+.|+.+++|+.... .... .+.+|.... ...|++++..+++++.|+.+++|++..... ...
T Consensus 218 ~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------- 279 (466)
T COG2319 218 SSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------------- 279 (466)
T ss_pred cCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE-------------
Confidence 99999999966522 4444 577888876 448999998899999999999999875432 000
Q ss_pred cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (764)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 444 (764)
. ..|...+.++.+.|++..+++++.
T Consensus 280 ----------------------------------------------------~---~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 280 ----------------------------------------------------L---SGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred ----------------------------------------------------E---ecCCccEEEEEECCCCCEEEEeeC
Confidence 0 133578899999999998888999
Q ss_pred CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecCcceEEEEE
Q 004270 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523 (764)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~ 523 (764)
++.+.+|+..+........ ...|...+..+.+.+++..++.+ ..|+.+.+|+...............+..+.+
T Consensus 305 d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSF 378 (466)
T ss_pred CCcEEEEEcCCCceEEEee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEE
Confidence 9999999888776655542 12677789999994332456555 6889999999998873333333344888888
Q ss_pred eecCCEEEE-EeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 524 HRVNGLLAT-VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 524 s~~~~~la~-~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
++ ...+.. +..++.+.+|+............+...+....+++++..+++++.++.+++|++.+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 88 543443 68899999999999988877776547899999999999999999999999999988
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.1e-24 Score=212.69 Aligned_cols=253 Identities=15% Similarity=0.320 Sum_probs=218.3
Q ss_pred EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHH
Q 004270 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361 (764)
Q Consensus 282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 361 (764)
+++....+-.+++|+.... ..|...+.++..-..++.+++|+.|..+.+|.+........
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~----------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---------- 65 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREF----------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---------- 65 (825)
T ss_pred ccceeeeeeccccccchhh----------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe----------
Confidence 4444445556778865322 36888888888866888999999999999998754322211
Q ss_pred hhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE
Q 004270 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (764)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 441 (764)
..+|..+|.++.|++...+++.
T Consensus 66 ----------------------------------------------------------~~~hespIeSl~f~~~E~Llaa 87 (825)
T KOG0267|consen 66 ----------------------------------------------------------LTGHESPIESLTFDTSERLLAA 87 (825)
T ss_pred ----------------------------------------------------------eeccCCcceeeecCcchhhhcc
Confidence 1256799999999999999999
Q ss_pred EecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEE
Q 004270 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVK 520 (764)
Q Consensus 442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~ 520 (764)
|+.+|.|++||+..++....+. +|...+..+.|+|-+.+.++++.|+.+++||.+...+...+..+ ..+..
T Consensus 88 gsasgtiK~wDleeAk~vrtLt--------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLT--------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred cccCCceeeeehhhhhhhhhhh--------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence 9999999999999999888775 99999999999999999999999999999999988888888876 66788
Q ss_pred EEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC-C
Q 004270 521 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-V 599 (764)
Q Consensus 521 ~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~ 599 (764)
+.|+|+|++++.|++|..++|||...|+....|.+|.+.+..+.|+|..-++++||.|++|++||+++-+.+...... .
T Consensus 160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~ 239 (825)
T KOG0267|consen 160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD 239 (825)
T ss_pred EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888776554 3
Q ss_pred ceEEEEEcCCCCeEEEEEeCC
Q 004270 600 SITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 600 ~v~~l~~sp~g~~lat~~~d~ 620 (764)
.|.+++|+|+|..++++....
T Consensus 240 ~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 240 GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CceeeeecCCceeeecCchhh
Confidence 599999999999998887665
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-21 Score=186.69 Aligned_cols=290 Identities=14% Similarity=0.154 Sum_probs=231.3
Q ss_pred EEEEEEeCCeEEEEecCCCeEEEecC--CCCcceEEEEEeCCe-EEEEE-CCe--EEEEecCce---EEE---ecccccc
Q 004270 28 NFVTVSVGKAFHIYNCAKLNLVLVGP--QLPKKIRALASYRDY-TFAAY-GNH--IAVVKRAHQ---VAT---WSRHSAK 95 (764)
Q Consensus 28 ~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~~~I~~~~~~~~~-~~~a~-g~~--i~vw~~~~~---~~~---~~~h~~~ 95 (764)
.+..++.+..+.+||....+..-... ..+-.|.++.+.... +.+|+ ++. |++|...++ +.. +.|. .
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~ 81 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--N 81 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--h
Confidence 36677888999999999866554331 123348899988775 44444 333 888975433 222 3343 3
Q ss_pred eEEEE--EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004270 96 VNLLL--LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (764)
Q Consensus 96 v~~l~--~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~ 173 (764)
-+|++ -...++++|+..+.|+|||+....+ .+.++.|...+..+.+.... .+|++++..|.|.|-++.++..
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~----hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLI----HRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHH----hhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEEecccCcc
Confidence 33443 3568999999999999999996665 56677777777777788777 7999999999999999999988
Q ss_pred EEEEcCC-CCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 174 LYEFKGW-GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 174 ~~~~~~h-~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
...|... ...|.-+.|+|..+ +|.+++.+|.|.+||+.....+..+...|..+...++|+|....+|++.+.|..|.+
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 8888654 45666899999876 455788899999999998889998888889999999999999889999999999999
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (764)
||....+....+. ...+...++|.++|.+|+.|...|.|..||++... .++..+..|...|++++|-+.. .+++
T Consensus 236 yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k---~Pv~v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 236 YDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK---APVAVRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred eecccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCC---CCceEeeecccceeEEEeeecc-eeee
Confidence 9999888888876 56689999999999999999999999999997654 5677788999999999998865 3443
No 159
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.89 E-value=3.1e-21 Score=175.60 Aligned_cols=351 Identities=14% Similarity=0.160 Sum_probs=258.4
Q ss_pred EEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEE-EEEcCCeEEEEEccCCceEEEEe
Q 004270 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 142 ~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la-~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
-|.|+|++ +++++.+.- .+.|-|..+.+..+.+.. -+.|..+.|..|..+++ ....++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g--~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCG--NYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCC--Ceeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 57899999 899999776 688889888777666554 45678889998876655 45678899999999888888888
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
.+ ..++.+++|||||+++|.+...+-.|.+|.+.+.+....-. ....+..++|+|||++.+.++.-.......+..
T Consensus 89 eg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~- 164 (447)
T KOG4497|consen 89 EG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS- 164 (447)
T ss_pred cC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHh-
Confidence 77 78899999999999899999999999999998877655433 344578999999999988877532111111110
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
-..+.+++.+.-..-..+.+.|+|||..|+. ||..-..
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Ley--------------------------------- 202 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEY--------------------------------- 202 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhh---------------------------------
Confidence 1112445555556667889999999877664 4421100
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
.++.| .-.-.+..++++|+++++++|+.|+.+++.|--+-+...
T Consensus 203 --------------------kv~aY----------------e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 203 --------------------KVYAY----------------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred --------------------eeeee----------------eeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence 00000 011567889999999999999999999887654433322
Q ss_pred eecCcccc----------------------------------------------------------ccccccCcEEEEEE
Q 004270 461 SYLDMSER----------------------------------------------------------SNYAHNGEVVGVAC 482 (764)
Q Consensus 461 ~~~~~~~~----------------------------------------------------------~~~~h~~~v~~l~~ 482 (764)
.+...... ......-.+.-++|
T Consensus 247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf 326 (447)
T KOG4497|consen 247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF 326 (447)
T ss_pred hhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee
Confidence 22111000 01122345777999
Q ss_pred CCCCCEEEEEeC--CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe
Q 004270 483 DSTNTLMISAGY--HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560 (764)
Q Consensus 483 ~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i 560 (764)
++|..+++|-.. -..+-+||++..++...+....+|....|.|....|++......+++|.......+..-. ..-.|
T Consensus 327 s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i 405 (447)
T KOG4497|consen 327 SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNI 405 (447)
T ss_pred cCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-CCcee
Confidence 999999888754 357999999999888888888999999999999999999888899999988766665543 33679
Q ss_pred eEEEEcCCCcEEEEEeCCC
Q 004270 561 TDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 561 ~~l~~s~dg~~l~s~s~dg 579 (764)
.++.|.-+|..++-.+.|.
T Consensus 406 ~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 406 QKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred eeEEecCCCcEEEEEcCCc
Confidence 9999999999999999886
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.3e-21 Score=177.95 Aligned_cols=250 Identities=20% Similarity=0.306 Sum_probs=193.5
Q ss_pred ecccccceEEEEE----eCCEEEEEecCCcEEEEEccCCc------------ccccceeeEecCCccccEEEEeCCCCCC
Q 004270 89 WSRHSAKVNLLLL----FGEHILSIDIDGNMFIWAFKGIE------------ENLAPVGHVKLDDKFTPTCIMHPDTYLN 152 (764)
Q Consensus 89 ~~~h~~~v~~l~~----~g~~l~s~~~dg~v~vWd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 152 (764)
..+|.+.+..+.. +..+.++-+..|.|.||++.... ....|+.++..|......+.|+|..+ .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-G 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-c
Confidence 4567777777664 45678888889999999985421 13456778888888888999999665 5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEE---EEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCCce-EEEEeccCCCCE
Q 004270 153 KVIVGSQEGSLQLWNISTKKKL---YEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEE-LVTFTHSMRGAV 227 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~---~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~v 227 (764)
.+++|..-+.|++|...+|.=. ..|.+|...|-.++|||.. ..+|+|+.||+|+|||++.+.. ...+...|.+.|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 7999999999999998886432 3467899999999999964 5899999999999999998832 222224457899
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCC-
Q 004270 228 TALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDG- 302 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~- 302 (764)
..++|+.+-. +||+|+.||+++|||++. ++++..+. -|..+|+++.|+|.. ..++++|.|++|.+||+.....
T Consensus 306 NVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 306 NVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred eeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 9999999888 999999999999999975 46777887 899999999999954 5788889999999999875422
Q ss_pred --------------CceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEe
Q 004270 303 --------------DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 303 --------------~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~ 343 (764)
.++++. ...-...+..+.|++ -..++++.+.|| +.+|..
T Consensus 384 ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred hhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 111222 112245678888988 345888888898 666653
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=9.8e-21 Score=172.01 Aligned_cols=286 Identities=17% Similarity=0.243 Sum_probs=213.7
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc---------eeeEeccCCCCCCeeEEEe-------cCCCEEEEEe
Q 004270 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------RLLRFRSGHSAPPLCIRFY-------ANGRHILSAG 333 (764)
Q Consensus 270 ~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~---------~~~~~~~~h~~~v~~i~~~-------~~~~~l~s~~ 333 (764)
-...+.|+|||..|++.+.|+.+++|++....... ............|...+|. |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 45578899999999999999999999875432110 0111111233456666776 5678899999
Q ss_pred CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (764)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 413 (764)
.+.-|++||.-+++....+..-....
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~d------------------------------------------------------ 156 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQD------------------------------------------------------ 156 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHH------------------------------------------------------
Confidence 99999999998887655543211100
Q ss_pred ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC-cCCcccceecCccccccccccCcEEEEEECCCC-CEEEE
Q 004270 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS 491 (764)
Q Consensus 414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s 491 (764)
.-....+++|+|||..|++|.. ..|++||+ +.|..-..+..... ...+..+-+.+++|+|.. +.++.
T Consensus 157 ---------e~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~-~k~gq~giisc~a~sP~~~~~~a~ 225 (406)
T KOG2919|consen 157 ---------EYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTK-GKFGQKGIISCFAFSPMDSKTLAV 225 (406)
T ss_pred ---------hhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhc-ccccccceeeeeeccCCCCcceee
Confidence 0145678999999999998864 58999999 56655444331110 112447789999999965 58999
Q ss_pred EeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeC-CCeEEEEEccC-CeEEEEeecCCC-CeeEE--EE
Q 004270 492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA-LRMVRKFEGHTD-RITDF--CF 565 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~-~~~~~~~~~h~~-~i~~l--~~ 565 (764)
++...++-||.-..+.++..+..+ +.|+.++|.++|+.|.+|.. |..|..||++. +.++..+..|.+ .=..| ..
T Consensus 226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence 999999999999888888887665 89999999999999999876 77999999975 456777887765 22334 44
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCc-cceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCC
Q 004270 566 SEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 566 s~dg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~ 620 (764)
.|+|++|++|+.||.|++||+++ |..+..+..++. ++.++++|--..+||++...
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 78999999999999999999998 776766665554 99999999999999887543
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=183.28 Aligned_cols=240 Identities=17% Similarity=0.311 Sum_probs=183.3
Q ss_pred CCEEEEEecCCcEEEEEccCCcccccceeeE------------------ecCCccccEEEEeCCCCCCEEEEEeCCCcEE
Q 004270 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHV------------------KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ 164 (764)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~ 164 (764)
|+++|.|+.|..|.|||+.-.....+ ...+ ..|...+..+++..... +.|++||.|.+|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-NVLASGSADKTVK 269 (463)
T ss_pred cceEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-eeEEecCCCceEE
Confidence 78999999999999999865332111 1111 11222223333333332 7899999999999
Q ss_pred EEeCCCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCce-EEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270 165 LWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEE-LVTFTHSMRGAVTALAFSSDGQPLLAS 242 (764)
Q Consensus 165 iwd~~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~l~fs~d~~~~l~s 242 (764)
+||+.+|++..++..|.+.|.++.|+|. ..+|++|+.|++|.+.|.+.... -..+.. .+.|-.++|.|.....+++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEE
Confidence 9999999999999999999999999996 57899999999999999984222 222222 4789999999999888999
Q ss_pred EeCCCcEEEEECCCc-eeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270 243 GASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (764)
Q Consensus 243 g~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (764)
+..||+|+-+|+++. +++.++. +|.++|.++++++.-+ ++++++.|+.|++|+++.... +.+....-.-+...|.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCF 424 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--cccccccccccceeec
Confidence 999999999999876 8889998 9999999999998655 788999999999999986644 2222222222346777
Q ss_pred EEecCC-CEEEEEeCCCcEEEEEeeccccc
Q 004270 321 RFYANG-RHILSAGQDRAFRLFSVIQDQQS 349 (764)
Q Consensus 321 ~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~ 349 (764)
++.|+- -.++.||..+.+++||+.+....
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhH
Confidence 888854 45677788888999999776543
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1.1e-20 Score=172.08 Aligned_cols=320 Identities=18% Similarity=0.248 Sum_probs=220.1
Q ss_pred cCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEccCCc---eEEEEec-cCCCCEEEEEEeeC---CCCEEEEEeC
Q 004270 178 KGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE---ELVTFTH-SMRGAVTALAFSSD---GQPLLASGAS 245 (764)
Q Consensus 178 ~~h~~~i~~~~~sp-----~~~~la~g~~dg~i~iwd~~~~~---~~~~~~~-~~~~~v~~l~fs~d---~~~~l~sg~~ 245 (764)
..|..+|..++|.+ +-+.+|+.+. ..+.+|+..... .++.... .+......++|+-| +..++|+|+.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 46788999999985 2346666665 678999887544 2333332 24667888888754 4568999999
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEe---ccCCCCCCeeEE
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRF---RSGHSAPPLCIR 321 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~---~~~h~~~v~~i~ 321 (764)
-|.|+|.|+.++++...+. +|...|+.+.|.|+. ++++++|.|.+||+|++.+. .++.. ..||...|.++.
T Consensus 114 ~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~----~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD----VCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred eeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC----eEEEEecccccccCcEEEEE
Confidence 9999999999999999999 999999999999976 58899999999999999877 34443 368999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCce
Q 004270 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (764)
Q Consensus 322 ~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (764)
|+++|.+|+++|.|.++++|++...+....+.... .........++|.. .
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~------~~~~~~t~~pfpt~------------------------~ 238 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSI------TYSPNKTTRPFPTP------------------------K 238 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhc------ccCCCCccCcCCcc------------------------c
Confidence 99999999999999999999997544322221100 00000000000000 0
Q ss_pred EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC-cCCcccceecCcccc-----ccccccC
Q 004270 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSER-----SNYAHNG 475 (764)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~-~~~~~~~~~~~~~~~-----~~~~h~~ 475 (764)
.. ...+....-|...|.|+.|- |+++++-+-++.|..|.. +-++.......+... ...-...
T Consensus 239 ~~----------fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c 306 (385)
T KOG1034|consen 239 TH----------FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC 306 (385)
T ss_pred cc----------cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc
Confidence 00 00111112344555555554 588888888999999987 222221111111100 0111223
Q ss_pred cEEE--EEECCCCCEEEEEeCCCeEEEEECCCCCee--eeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270 476 EVVG--VACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (764)
Q Consensus 476 ~v~~--l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~ 545 (764)
.|.- .+|++-+++||.|...|.|.+||++..+.. .++.+ ...|...+|+.|+.+|+..++|++|.-||.-
T Consensus 307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3444 456777899999999999999999977653 22332 2789999999999999999999999999854
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.2e-21 Score=176.03 Aligned_cols=287 Identities=19% Similarity=0.327 Sum_probs=207.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEec--cCCCCE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTH--SMRGAV 227 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~v 227 (764)
+.++++...|+|++||..+++.+..|+++...++.+.|.. ..+.+.+++.||+|++||+++......+.. +...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5699999999999999999999999999999999999987 567899999999999999998776655543 323467
Q ss_pred EEEEEeeCCCCEEEEEe----CCCcEEEEECCCcee-eeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCC
Q 004270 228 TALAFSSDGQPLLASGA----SSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTD 301 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~----~dg~i~iwd~~~~~~-~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~ 301 (764)
.+++....++ ++++|. .+-.|.+||++..+. +..+...|...|+++.|+|.. ++|++||.||-|.++|+....
T Consensus 121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7777766666 888876 466899999998865 777778999999999999965 499999999999999987765
Q ss_pred CCceeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 302 GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
..-.++.. -.|...|.++.|..++ +.|.+-+...++.+|++..+.....+.........
T Consensus 200 EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d------------------- 259 (376)
T KOG1188|consen 200 EEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD------------------- 259 (376)
T ss_pred chhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh-------------------
Confidence 44334333 3678889999999876 45888888999999999887755544432111100
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEE-EEecCCcEEEEECc---CC
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV-LGTAGGWIERFNLQ---SG 456 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~~g~i~i~~~~---~~ 456 (764)
.+..+... .-|.+. ...++...+ .|+..|...++-+. ++
T Consensus 260 ---~r~~~~~d---------------------------------Y~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~ 302 (376)
T KOG1188|consen 260 ---LRKEDNCD---------------------------------YVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSG 302 (376)
T ss_pred ---HHhhhhhh---------------------------------heeecc-cCCCcceEEEeccccCceeEEEeeecccc
Confidence 00000000 011111 111223333 33334555554433 22
Q ss_pred cc---cceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 457 IS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 457 ~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
.. ...+. .+|..-|+++.|...+..+.|||.||.+.+|..
T Consensus 303 ~~~~~~a~l~-------g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 303 SLLTEPAILQ-------GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccCcccccc-------CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 22 22222 257778899999999999999999999999985
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=6.2e-21 Score=173.81 Aligned_cols=336 Identities=15% Similarity=0.193 Sum_probs=226.6
Q ss_pred ecccccceEEEEEe------CCEEEEEecCCcEEEEEccCCcccccceeeEe--cCCccccEEEEeCCCC--CCEEEEEe
Q 004270 89 WSRHSAKVNLLLLF------GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK--LDDKFTPTCIMHPDTY--LNKVIVGS 158 (764)
Q Consensus 89 ~~~h~~~v~~l~~~------g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~--~~~l~~~~ 158 (764)
...|..+|..++|+ ...+++....+.+.+++........ .++... -+.....+|++.-+.+ ...+++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcccee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 45677777777763 2233333335667777765443100 011111 1334445666655543 24788899
Q ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCCceEEEEe--ccCCCCEEEEEEeeC
Q 004270 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSD 235 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~d 235 (764)
.-|.|+|.|+.++++...+.+|...|+.+.+.|+. ++|++++.|..|++||++++.++..|- .+|.+.|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 99999999999999999999999999999999975 689999999999999999999998886 456889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270 236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (764)
Q Consensus 236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (764)
|. .+++++.|.+|++|++...+....+. .+..|+|++...=.- .-...+.++ .+..-|..
T Consensus 193 gd-~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfp--t~~~~fp~f----------st~diHrn 252 (385)
T KOG1034|consen 193 GD-RIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFP--TPKTHFPDF----------STTDIHRN 252 (385)
T ss_pred CC-eeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCC--ccccccccc----------cccccccc
Confidence 99 99999999999999998766544444 124566655321100 001112221 13457999
Q ss_pred CCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc-ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (764)
.|-|++|.. .++++-+-++.|..|..-.-... .... +|-
T Consensus 253 yVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vk--------------------p~e------------------ 292 (385)
T KOG1034|consen 253 YVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVK--------------------PPE------------------ 292 (385)
T ss_pred hHHHHHHHh--hheeecccCceEEEEecchhhhhhhccC--------------------CCc------------------
Confidence 999999974 68999999999999986311110 0000 000
Q ss_pred eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccccc
Q 004270 395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474 (764)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (764)
.....+.-++++.. .-.....++.|.++.|+.|...|.|++||+........-.. .-....
T Consensus 293 --s~~Ti~~~~~~~~c-------------~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s~~~ 353 (385)
T KOG1034|consen 293 --SATTILGEFDYPMC-------------DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL----THSKSG 353 (385)
T ss_pred --cceeeeeEeccCcc-------------ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE----Eecccc
Confidence 00000111111110 01233457788899999999999999999988766322110 001234
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..|...+|+.|+..|+....|++|.-||.-
T Consensus 354 ~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 354 STVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 578999999999999999999999999853
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=8.2e-20 Score=171.41 Aligned_cols=161 Identities=25% Similarity=0.354 Sum_probs=135.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCce---------EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEE
Q 004270 181 GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEE---------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250 (764)
Q Consensus 181 ~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~---------~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~ 250 (764)
..+|..+.|.++.. .+|+|+.|..|++|-+..+.. +..+ ..|...|+++.|+|+|. +||+|+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 56888899988776 999999999999998874321 2233 34578999999999999 999999999999
Q ss_pred EEECC--------C--------ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC
Q 004270 251 IWNLE--------K--------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 251 iwd~~--------~--------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
+|-.. + ......+. +|...|..++|+|++.++++++.|+++++||+..+ .....+..|.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G----~l~~~~~dh~ 165 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG----QLLAILDDHE 165 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeeeeccceEEEEEeccc----eeEeeccccc
Confidence 99765 2 12233344 89999999999999999999999999999999877 6788889999
Q ss_pred CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~ 348 (764)
.-+..++|.|-++++++-+.|+..+.+++...+.
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 9999999999999999999999888887765443
No 167
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=169.83 Aligned_cols=343 Identities=14% Similarity=0.193 Sum_probs=244.5
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 004270 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE 265 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 265 (764)
-+.|||+|+++|+.+.- .+.|-|..+-+..+.+.. -..|..+.|..|..++|.....++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId- 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID- 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-
Confidence 46899999999999875 888889887776655554 35688999999998788888899999999999998888888
Q ss_pred ccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 266 AHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
....++.+++|+|||+ .|.+...|-.|.+|.+.+..+ ..+ .-....+..++|+|||++.+.++.-...-.+++.
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--YLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--EEe---cccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 5677899999999996 556666799999999887643 122 2234556899999999998887653211111110
Q ss_pred cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (764)
.. .+| ..+....-..
T Consensus 164 ~c----------------------------------------~~W-------------------------~ll~~f~~dT 178 (447)
T KOG4497|consen 164 SC----------------------------------------KAW-------------------------ILLKEFKLDT 178 (447)
T ss_pred hh----------------------------------------HHH-------------------------HHHHhcCCCc
Confidence 00 000 0001111122
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
-..+.+.|+|||+.+++=.+--.-.++ . ..-.-.+..++|+|.+++++.|+.|+.+|+.+--
T Consensus 179 ~DltgieWsPdg~~laVwd~~Leykv~---------a---------Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 179 IDLTGIEWSPDGNWLAVWDNVLEYKVY---------A---------YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred ccccCceECCCCcEEEEecchhhheee---------e---------eeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 456778999999988864321111111 1 1234568889999999999999999999886532
Q ss_pred CCCe------------------------------------------------------------eeeEe-------cCcc
Q 004270 505 GRDL------------------------------------------------------------KSRWE-------VGCS 517 (764)
Q Consensus 505 ~~~~------------------------------------------------------------~~~~~-------~~~~ 517 (764)
+-+. +..++ ....
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 1100 00011 0145
Q ss_pred eEEEEEeecCCEEEEEeCC--CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE
Q 004270 518 LVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 595 (764)
Q Consensus 518 i~~~~~s~~~~~la~~~~d--~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~ 595 (764)
+..++|++|+.++|+-.+. ..+.+||++..++...+. ...+|....|.|....|+.+.....+++|...-...+..-
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 6789999999999987654 689999999877665554 5578999999999888888877788999997654444444
Q ss_pred eeCCceEEEEEcCCCCeEEEEEeCCC
Q 004270 596 HVDVSITALSLSPNMDVLATAHVDQN 621 (764)
Q Consensus 596 ~~~~~v~~l~~sp~g~~lat~~~d~~ 621 (764)
...-.|..+.|.-+|++++..+.|.-
T Consensus 400 ~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCCcEEEEEcCCce
Confidence 33446999999999999999999873
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=176.11 Aligned_cols=282 Identities=21% Similarity=0.283 Sum_probs=202.5
Q ss_pred EEEEcCCCCEEEEEEcC---Ce--EEEEEccCCceEEEEeccC---CCCEEEEEEeeC-------CCCEEEEEeCCCcEE
Q 004270 186 SCVSSPALDVVAVGCSD---GK--IHVHNVRYDEELVTFTHSM---RGAVTALAFSSD-------GQPLLASGASSGVIS 250 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~d---g~--i~iwd~~~~~~~~~~~~~~---~~~v~~l~fs~d-------~~~~l~sg~~dg~i~ 250 (764)
.+..-|..++|+++-.+ .. |++|+-... .+ +.+|. .....|++|... |+ ++|.|+.+..|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~-nl--YvHHD~ilpafPLC~ewld~~~~~~~~gN-yvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE-NL--YVHHDFILPAFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCc-ce--eEecceeccCcchhhhhhhcCCCCCCCcc-eEEEeccCceeE
Confidence 45566766777776443 23 445543321 11 11111 234456666533 34 999999999999
Q ss_pred EEECCCce---e-----------------eeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270 251 IWNLEKRR---L-----------------QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 251 iwd~~~~~---~-----------------~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (764)
|||+.-.. + ......+|+..|.+++|+..- +.|++||.|.+|++||+++. .+...
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g----~p~~s 281 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG----KPKSS 281 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC----Cccee
Confidence 99985210 0 000113688899999998754 48999999999999999987 56666
Q ss_pred ccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270 310 RSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (764)
+..|...|.++.|+| ....|++|+.|+++.+.|.+.......
T Consensus 282 ~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~------------------------------------- 324 (463)
T KOG0270|consen 282 ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK------------------------------------- 324 (463)
T ss_pred hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc-------------------------------------
Confidence 778999999999999 778999999999999999875221111
Q ss_pred ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCC-cccceecCcc
Q 004270 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSG-ISRGSYLDMS 466 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~-~~~~~~~~~~ 466 (764)
-|.+ .+.|-.++|.|.. ..+++++.||.++-+|+++. +.+.++
T Consensus 325 ---------------~wk~----------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~---- 369 (463)
T KOG0270|consen 325 ---------------EWKF----------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL---- 369 (463)
T ss_pred ---------------eEEe----------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE----
Confidence 1111 2778888998854 67888999999999999876 555555
Q ss_pred ccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecC-CEEEEEeCCCeEEE
Q 004270 467 ERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVN-GLLATVADDLVIRL 541 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~-~~la~~~~d~~i~v 541 (764)
.+|.+.|.++++++.. .++++++.|+.|++|++..........+. +...|+++.|+- ..+|+|+..+.++|
T Consensus 370 ----~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 370 ----KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred ----EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence 4999999999999854 57889999999999999865544333332 446677777765 46788888889999
Q ss_pred EEccCCeEEE
Q 004270 542 FDVVALRMVR 551 (764)
Q Consensus 542 ~d~~~~~~~~ 551 (764)
||+.+...++
T Consensus 446 wd~~~~~~V~ 455 (463)
T KOG0270|consen 446 WDIFTNSPVR 455 (463)
T ss_pred eecccChhHH
Confidence 9998876544
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=3.3e-19 Score=172.79 Aligned_cols=437 Identities=19% Similarity=0.199 Sum_probs=274.3
Q ss_pred ccccceEEEEEeC-CEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCC-------CCCEEEEEeCCCc
Q 004270 91 RHSAKVNLLLLFG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDT-------YLNKVIVGSQEGS 162 (764)
Q Consensus 91 ~h~~~v~~l~~~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~l~~~~~dg~ 162 (764)
.|...|.++.+.+ .-++..+.|..+.+|.-.+.+. ...+...+.++.+..+ +.+ ....++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s----~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS----VEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh----hhhhhCCcccCCcccc-ccccccCCCCCcceEEEEcCCce
Confidence 5666676776633 3455555577766665444333 2233333444433322 211 1246889999999
Q ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (764)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~s 242 (764)
+.+.+ +.++.-..+..|.+.+.|-.|+|||.-|++++.||.|++|. ++|-...++.+. ..+|+|++|.|+...++.+
T Consensus 87 f~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~-~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 87 FVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQN-EESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhc-CceeEEEEECCCCCceEEe
Confidence 99998 68888889999999999999999999999999999999998 445544444443 6789999999999867766
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (764)
.+ +.+.|=.+.....+-..+ +|.+-|.++.|++...++++|+.|-..++||-.. +.+..-..|..+|++++|
T Consensus 164 ~g--~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 164 QG--GHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEYAITSVAF 235 (737)
T ss_pred cC--CeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCChhccceeeeee
Confidence 54 677777776665555666 8999999999999999999999999999996432 456666789999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (764)
Q Consensus 323 ~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
.|+ +.++.++.. ++|+=.
T Consensus 236 npd-~~~~v~S~n-t~R~~~------------------------------------------------------------ 253 (737)
T KOG1524|consen 236 NPE-KDYLLWSYN-TARFSS------------------------------------------------------------ 253 (737)
T ss_pred ccc-cceeeeeee-eeeecC------------------------------------------------------------
Confidence 999 555555532 344111
Q ss_pred EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc-cee----cCcccc---------
Q 004270 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSY----LDMSER--------- 468 (764)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-~~~----~~~~~~--------- 468 (764)
...+.|..++||+||..+++|+..|.+.+-..-..+.. ..+ ......
T Consensus 254 -------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v 314 (737)
T KOG1524|consen 254 -------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGV 314 (737)
T ss_pred -------------------CCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhH
Confidence 12378999999999999999999998765332111110 000 000000
Q ss_pred -ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-------------------CcceEE------EE
Q 004270 469 -SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------------------GCSLVK------IV 522 (764)
Q Consensus 469 -~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------------------~~~i~~------~~ 522 (764)
........|...+.. -.+|+++.. ..|++|.-+.-.....++. ...++- ..
T Consensus 315 ~d~LE~p~rv~k~sL~--Y~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~ 391 (737)
T KOG1524|consen 315 QDILEFPQRVVKFSLG--YGHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLH 391 (737)
T ss_pred HHHhhCccceeeeeec--eeEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCcee
Confidence 001223334444432 223333332 3455554332111111110 001100 01
Q ss_pred Eee-----------------cCCEEEEE--eCCCeEEEEEc-cCCeEEEE--eecCCCCeeEEEEc----CCCcEEEEEe
Q 004270 523 YHR-----------------VNGLLATV--ADDLVIRLFDV-VALRMVRK--FEGHTDRITDFCFS----EDGKWLLSSG 576 (764)
Q Consensus 523 ~s~-----------------~~~~la~~--~~d~~i~v~d~-~~~~~~~~--~~~h~~~i~~l~~s----~dg~~l~s~s 576 (764)
++| ....|+.- .+...+++||. .+++.... +-.|...|..++.. ++.+.++.-.
T Consensus 392 ~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiD 471 (737)
T KOG1524|consen 392 LNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFID 471 (737)
T ss_pred cCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEe
Confidence 111 12233332 22345677776 55554332 22366667767664 3557788888
Q ss_pred CCCcEEEEEcCc-cceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 577 MDGSLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 577 ~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
..+.++|=.+++ |+.-..++...-|..++|+..-+.| .+-.|++ +.+|-..
T Consensus 472 knrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNiL-cglqDt~-fsVWy~p 523 (737)
T KOG1524|consen 472 KNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNIL-CGLQDTC-FSVWYYP 523 (737)
T ss_pred cCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccccee-eeeccce-EEEEEcC
Confidence 888888877765 3444445556668999998766655 5556774 8899754
No 170
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=173.23 Aligned_cols=209 Identities=19% Similarity=0.277 Sum_probs=167.8
Q ss_pred ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC----------------CeEEEEEcCCCCCeEEEEEcCCC-CEEEEEE
Q 004270 138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST----------------KKKLYEFKGWGSSISSCVSSPAL-DVVAVGC 200 (764)
Q Consensus 138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~h~~~i~~~~~sp~~-~~la~g~ 200 (764)
+.+..+...+-+.-...++-+..|.|+|||+.. .++++++.+|...=..++|||-. ..|++|.
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence 333444444443224667778899999999743 35788999999999999999943 3578887
Q ss_pred cCCeEEEEEccCCceE---EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeeEEEE
Q 004270 201 SDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHF 276 (764)
Q Consensus 201 ~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~ 276 (764)
--+.|++|...+|.-. ..|.. |...|-.++|||..+.++++|+.||+|+|||++.+ +.......+|.+.|+.+.|
T Consensus 232 c~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW 310 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW 310 (440)
T ss_pred cccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc
Confidence 7789999999887532 22333 58899999999998889999999999999999988 2222233489999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccc
Q 004270 277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQ 348 (764)
Q Consensus 277 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~ 348 (764)
+.+.++|++|+.||+++|||++.-... ..+..+..|..+|+++.|+| +...|+++|.|..|.+||+.....
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 999999999999999999999876544 67778889999999999999 667888999999999999975543
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=166.45 Aligned_cols=308 Identities=16% Similarity=0.238 Sum_probs=214.3
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
.+.+.+++|.+.|+++.|-.+++ |.+|...|.|++|++.+.+.+..+...+...|+.+.-.|++. +.+-+.|+.+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc--hhhcCCCceEEE
Confidence 35667789999999999998765 889999999999999999999888866688999999999865 788899999999
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (764)
|++..+..+.. |.-.++++.|.+-. +...+. ...|-........... | ..-
T Consensus 82 w~ia~s~~i~i----~Si~~nslgFCrfS--l~~~~k---~~eqll~yp~rgsde~-----h---------------~~D 132 (323)
T KOG0322|consen 82 WTIAYSAFISI----HSIVVNSLGFCRFS--LVKKPK---NSEQLLEYPSRGSDET-----H---------------KQD 132 (323)
T ss_pred EEccCcceEEE----eeeeccccccccce--eccCCC---cchhheecCCcccchh-----h---------------hhc
Confidence 99987654332 44556666666532 222211 1111111000000000 0 000
Q ss_pred EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (764)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (764)
++.--.+++-|-.
T Consensus 133 ~g~~tqv~i~dd~------------------------------------------------------------------- 145 (323)
T KOG0322|consen 133 GGDTTQVQIADDS------------------------------------------------------------------- 145 (323)
T ss_pred cCccceeEccCch-------------------------------------------------------------------
Confidence 0101111111100
Q ss_pred ecceeecCCCCCCCCeEEEEEc-cCCC--EEEEEecCCcEEEEECcCCcccceecCcccc--ccccccCcEEEEEECCCC
Q 004270 412 LGEHILRPCPENPTAVKACTIS-ACGN--FAVLGTAGGWIERFNLQSGISRGSYLDMSER--SNYAHNGEVVGVACDSTN 486 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s-~~g~--~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~ 486 (764)
.....+.+.+..+. .++. ++++|+++|.+.+||+.++.....+...... ....|..+|.++.+.+.-
T Consensus 146 --------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 146 --------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred --------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 00111333333321 1232 5678899999999999888554444322111 224799999999999877
Q ss_pred CEEEEEeCCCeEEEEECCCC--Ce--eeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee
Q 004270 487 TLMISAGYHGDIKVWDFKGR--DL--KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 561 (764)
Q Consensus 487 ~~l~s~~~dg~v~iwd~~~~--~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~ 561 (764)
..=++++.+..+..|++... .+ ..++.. +..+..+.+-||++.+|+++.|+.||||+.++.+++..++-|.+.|+
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn 297 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN 297 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence 77788888889999988643 22 222332 36788999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 562 DFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 562 ~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
+++|+||...+|++|+|++|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999986
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=1.6e-19 Score=169.58 Aligned_cols=298 Identities=17% Similarity=0.168 Sum_probs=215.3
Q ss_pred ccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCC-----ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270 268 DNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (764)
Q Consensus 268 ~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~ 341 (764)
..+|.++.|.++.. .++||+.|..|++|.++..... ...+..+..|...|++++|+|+|..|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45889999988776 9999999999999988765433 34566778999999999999999999999999999999
Q ss_pred EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (764)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (764)
....-... ......... -.. ........
T Consensus 93 k~~~~~~~---~~d~e~~~~----------------------------------------ke~---------w~v~k~lr 120 (434)
T KOG1009|consen 93 KQGDVRIF---DADTEADLN----------------------------------------KEK---------WVVKKVLR 120 (434)
T ss_pred EecCcCCc---cccchhhhC----------------------------------------ccc---------eEEEEEec
Confidence 86531100 000000000 000 11112223
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
+|...+..++|+|+++++++|+.|..+++||+..|.....+. .|...+..++|+|.++++++-+.|...+.+
T Consensus 121 ~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~ 192 (434)
T KOG1009|consen 121 GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSSDRHPEGF 192 (434)
T ss_pred ccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhccCccccee
Confidence 577899999999999999999999999999999999998875 899999999999999999999999877777
Q ss_pred ECCCCCeeeeEe--------------------cC----cceEEEEEeecCCEEEEEeC----CC-----eEEEEEccC-C
Q 004270 502 DFKGRDLKSRWE--------------------VG----CSLVKIVYHRVNGLLATVAD----DL-----VIRLFDVVA-L 547 (764)
Q Consensus 502 d~~~~~~~~~~~--------------------~~----~~i~~~~~s~~~~~la~~~~----d~-----~i~v~d~~~-~ 547 (764)
.+...+...... +. .-...++|+|+|.++++... ++ ..++|+-.. .
T Consensus 193 ~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 193 SAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred eeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 766544333222 01 22345789999999987643 22 335554332 2
Q ss_pred eEEEEeecCCCCeeEEEEcC------------------CCcEEEEEeCCCcEEEEEcCccceEEEEe--eCCceEEEEEc
Q 004270 548 RMVRKFEGHTDRITDFCFSE------------------DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLS 607 (764)
Q Consensus 548 ~~~~~~~~h~~~i~~l~~s~------------------dg~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~l~~s 607 (764)
++...+.+...+...+.|+| -+-.+|.++ ...|+|||.++-.++.... +-.+++.++|+
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws 351 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWS 351 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeec
Confidence 34555666666666666665 112344455 4569999999888876653 33469999999
Q ss_pred CCCCeEEEEEeCCCeEEEEe
Q 004270 608 PNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 608 p~g~~lat~~~d~~~i~lW~ 627 (764)
+||.+|+..+.||- ..+-.
T Consensus 352 ~dg~~l~vSS~DGy-CS~vt 370 (434)
T KOG1009|consen 352 DDGSVLLVSSTDGF-CSLVT 370 (434)
T ss_pred CCCcEEEEeccCCc-eEEEE
Confidence 99999999999993 44433
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=2.9e-19 Score=162.50 Aligned_cols=280 Identities=18% Similarity=0.279 Sum_probs=207.3
Q ss_pred CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC------------eEEEEEc-CCCCCeEEEEEc-------CCCCE
Q 004270 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK------------KKLYEFK-GWGSSISSCVSS-------PALDV 195 (764)
Q Consensus 136 ~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~-~h~~~i~~~~~s-------p~~~~ 195 (764)
+..+...|-++|++ ..|++-+.|..+.+|++... +...+++ .....|...+|- |+..+
T Consensus 48 p~nf~kgckWSPDG--SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDG--SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred chhhhccceeCCCC--ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 34566788999999 89999999999999997421 0111111 124556666664 67789
Q ss_pred EEEEEcCCeEEEEEccCCceEEEEecc-CC---CCEEEEEEeeCCCCEEEEEeCCCcEEEEEC-CCceeeeee---e---
Q 004270 196 VAVGCSDGKIHVHNVRYDEELVTFTHS-MR---GAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSVI---R--- 264 (764)
Q Consensus 196 la~g~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~-~~~~~~~~~---~--- 264 (764)
+|+.+.+.-|++||.-+|+....+..- |. ....+++|+|||. .|++| ....|++||+ +.|+..... .
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhccc
Confidence 999999999999999999988777631 12 2457899999999 66655 5789999999 555322221 1
Q ss_pred cccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCcEEEEE
Q 004270 265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFS 342 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d 342 (764)
.+..+-+.+++|+|-.. .++.++...++-++.-+.. +++..+.+|.+.|+.++|.++|+.|++|+. |-.|..||
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 13367889999999655 8999999999999876655 677778899999999999999999999885 67799999
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
++......---.. + .+
T Consensus 280 iR~~~~pv~~L~r-----------------------------------------------------------h-----v~ 295 (406)
T KOG2919|consen 280 IRYSRDPVYALER-----------------------------------------------------------H-----VG 295 (406)
T ss_pred ehhccchhhhhhh-----------------------------------------------------------h-----cc
Confidence 9764332110000 0 01
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECcC-CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 495 (764)
....-.-..+.|+|++|++|+.+|.|++||++. +.....+. .|...+++++++|--.++++++..
T Consensus 296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCc
Confidence 112233456678999999999999999999998 66555553 789999999999998888887764
No 174
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.4e-20 Score=177.70 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC-CCEEEEEeCCCcEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVIS 250 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~-~~~l~sg~~dg~i~ 250 (764)
.+-..+.||.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|.|.. ..++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 34456889999999999999999999999999999999999999999999999999999999953 34889999999999
Q ss_pred EEECCCc----------eeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCC------ceeeEeccCC
Q 004270 251 IWNLEKR----------RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD------PRLLRFRSGH 313 (764)
Q Consensus 251 iwd~~~~----------~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~------~~~~~~~~~h 313 (764)
++|+... ....... .|...|..++-.|++ +.+.+++.||+++.+|++....- +..+......
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999752 2233333 799999999999999 58899999999999999764211 1111222223
Q ss_pred CCCCeeEEEec-CCCEEEEEeCCCcEEEEEee
Q 004270 314 SAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 314 ~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~ 344 (764)
.-...++..+| +..+|++|+.|-..++||.+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 34567899999 66789999999999999964
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.1e-19 Score=167.26 Aligned_cols=296 Identities=16% Similarity=0.203 Sum_probs=211.9
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc------CCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~------~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~ 248 (764)
..+.+|.+.|.++.||.++++|++|+.|..+++|++. +.+++....++|...|.|++|...++ .+++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcce
Confidence 3456899999999999999999999999999999986 45677777788889999999998877 8999999999
Q ss_pred EEEEECCCceeeeeeeccccc---CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-
Q 004270 249 ISIWNLEKRRLQSVIREAHDN---AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA- 324 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~- 324 (764)
|...|+++.+.+.... |.. .|..+..+|-.+.|++.+.++.|.+||.........+ ..+.........+.|+|
T Consensus 129 VI~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~-~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL-VLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eEeeecccceeeeeec--ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce-eeecCCCccceeeeecCC
Confidence 9999999999888875 544 8999999999999999999999999998765432222 22334456678889999
Q ss_pred CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (764)
Q Consensus 325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (764)
...+|++.+..+-+.+||.+..........
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~-------------------------------------------------- 235 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRS-------------------------------------------------- 235 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhh--------------------------------------------------
Confidence 567788888888899999875432111000
Q ss_pred EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484 (764)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 484 (764)
.+...+.....-.++.|+|+|+.
T Consensus 236 -----------~~~~L~~~~~~~M~~~~~~~G~Q---------------------------------------------- 258 (609)
T KOG4227|consen 236 -----------MFKGLPQENTEWMGSLWSPSGNQ---------------------------------------------- 258 (609)
T ss_pred -----------ccccCcccchhhhheeeCCCCCe----------------------------------------------
Confidence 00000000011123344444444
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe-eeeEecC-------cceEEEEEeecCCEEEEEeCCCeEEEEEccCC---------
Q 004270 485 TNTLMISAGYHGDIKVWDFKGRDL-KSRWEVG-------CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--------- 547 (764)
Q Consensus 485 ~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~-------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~--------- 547 (764)
+++--....-.+||+.+..+ +..+.+. ..+.+++|-.|. .+++|+++-.|++|.+...
T Consensus 259 ----~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~I 333 (609)
T KOG4227|consen 259 ----FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQI 333 (609)
T ss_pred ----ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCcccc
Confidence 33333323333344433221 1111111 234566676544 4999999999999987531
Q ss_pred --------------eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 548 --------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 548 --------------~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
+.+..++||..-++.+.|+|...+|++.+-...+++|.-
T Consensus 334 G~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 334 GHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 235568999999999999999999999999999999964
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1e-20 Score=200.40 Aligned_cols=286 Identities=18% Similarity=0.308 Sum_probs=219.8
Q ss_pred EEEEEeeCCCCEEEEEe----------CCCcEEEEECCC--c----eeeeeeecccccCeeEEEEecCCCE----EEEEc
Q 004270 228 TALAFSSDGQPLLASGA----------SSGVISIWNLEK--R----RLQSVIREAHDNAIISLHFFANEPV----LMSAS 287 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~----------~dg~i~iwd~~~--~----~~~~~~~~~h~~~v~~l~~~~~~~~----l~s~~ 287 (764)
-.++|+|++..++++|. .+.++-||.+.. . +....+. -....+.++|.+.+.. ++.|.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeeccc
Confidence 45789998876676653 244566665432 2 2333332 4557889999987764 88888
Q ss_pred CCCcEEEEEecC--CCCCceeeEeccCCCCCCeeEEEecC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270 288 ADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364 (764)
Q Consensus 288 ~d~~i~vw~~~~--~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (764)
.||.|.+|+... .......+.....|.++|..+.|++. ++.|++|+.||.|.|||+..........
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----------- 156 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----------- 156 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----------
Confidence 999999999876 34555677788899999999999994 5599999999999999987533221110
Q ss_pred cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (764)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 444 (764)
T Consensus 157 -------------------------------------------------------------------------------- 156 (1049)
T KOG0307|consen 157 -------------------------------------------------------------------------------- 156 (1049)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEE
Q 004270 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVK 520 (764)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~ 520 (764)
.......|.+++|+.. ...|++++.+|.+.|||++..+.+-.+... ..+..
T Consensus 157 -------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 157 -------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred -------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 0134566788888764 356788889999999999988777766555 34789
Q ss_pred EEEeecCC-EEEEEeCC---CeEEEEEccCC-eEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEE
Q 004270 521 IVYHRVNG-LLATVADD---LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDA 594 (764)
Q Consensus 521 ~~~s~~~~-~la~~~~d---~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~ 594 (764)
++|+|++. .++++++| -.|.+||++.. ..++.+++|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+..
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 99999874 55555554 37999998754 5678889999999999999966 8999999999999999999999999
Q ss_pred EeeCCc-eEEEEEcCCCC-eEEEEEeCCCeEEEEeccccc
Q 004270 595 IHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNRCMF 632 (764)
Q Consensus 595 ~~~~~~-v~~l~~sp~g~-~lat~~~d~~~i~lW~~~~~~ 632 (764)
+..... +..+.|+|... .++.++-|+. |.|+.+...-
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~ 330 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTD 330 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCC
Confidence 987554 99999999665 8888999995 9999986554
No 177
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=99.83 E-value=1.3e-21 Score=181.01 Aligned_cols=52 Identities=35% Similarity=0.411 Sum_probs=50.6
Q ss_pred CCCCCccCcccCeeEecCCcHHhHhhccChHhhhhcCCCCCCCCCCcCCCcc
Q 004270 682 FGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKFQHLLIILKVCPHLLWIW 733 (764)
Q Consensus 682 ~~~~~~~~~~~~~~~ls~~p~~~~~~l~~l~~i~~r~~p~~~~~~p~~~p~~ 733 (764)
..+.+++||+++|||||++|++|||+|+|||+||+||||+|||||||+||||
T Consensus 17 ~~~~s~~Qi~~~LiTLS~lP~srWq~Ll~LD~IK~RNKPkeppKkPe~APFF 68 (237)
T PF04192_consen 17 IEYSSPEQIDEDLITLSGLPRSRWQNLLNLDVIKERNKPKEPPKKPEKAPFF 68 (237)
T ss_pred cccCChhhhCccceeeccCCHHHHHHHHHHHHHHHhCCCCCCCCCcCCCCcc
Confidence 4599999999999999999999999999999999999999999999999999
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=1.8e-17 Score=169.30 Aligned_cols=273 Identities=12% Similarity=0.143 Sum_probs=182.5
Q ss_pred EEEEEeCCCcEEEEECCC-ce--eeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCC
Q 004270 239 LLASGASSGVISIWNLEK-RR--LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~-~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
+.++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++ ..+........ ...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~-~~~ 79 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAES-PLP 79 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeee-cCC
Confidence 344556789999999964 33 344443 446678899999999887664 57889999987 33322222222 233
Q ss_pred CCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270 315 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (764)
..+..++++|+++++++++. ++.+.+|++.........
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~----------------------------------------- 118 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP----------------------------------------- 118 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc-----------------------------------------
Confidence 45788999999998888764 778888887432110000
Q ss_pred EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccc
Q 004270 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473 (764)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h 473 (764)
+ ..+ .+
T Consensus 119 ------------------------------------------------------~-----------~~~---------~~ 124 (330)
T PRK11028 119 ------------------------------------------------------I-----------QII---------EG 124 (330)
T ss_pred ------------------------------------------------------e-----------eec---------cC
Confidence 0 000 11
Q ss_pred cCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeee-------eEecCcceEEEEEeecCCEEEEEeC-CCeEEEEEc
Q 004270 474 NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-------RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDV 544 (764)
Q Consensus 474 ~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~-------~~~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~ 544 (764)
.....+++++|+++++++++ .++.|.+||+.+...+. ..........++|+|++++++++.. ++.|.+|++
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 12234567888888775544 56889999987632221 1223355678999999999988876 899999999
Q ss_pred cC--C--eEEEEeecCC------CCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCccc----eEEEEeeCCceEEEEEcCC
Q 004270 545 VA--L--RMVRKFEGHT------DRITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR----QIDAIHVDVSITALSLSPN 609 (764)
Q Consensus 545 ~~--~--~~~~~~~~h~------~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~----~~~~~~~~~~v~~l~~sp~ 609 (764)
+. + +.+..+..+. .....+.|+|||++|+++. .++.|.+|++.... .+..+........++|+||
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS 284 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence 73 3 3344443221 1234689999999999885 47899999996432 3344433344678999999
Q ss_pred CCeEEEEEeCCCeEEEEeccc
Q 004270 610 MDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 610 g~~lat~~~d~~~i~lW~~~~ 630 (764)
|++|++++...++|.+|+++.
T Consensus 285 g~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEEEccCCcEEEEEEcC
Confidence 999999987555799998763
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.6e-19 Score=162.18 Aligned_cols=276 Identities=17% Similarity=0.266 Sum_probs=193.4
Q ss_pred CEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeC-CCCEEEEEeCCCcEEEEECCCceeeeeeec-ccc-cC
Q 004270 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIRE-AHD-NA 270 (764)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~h~-~~ 270 (764)
..+|++..+|.|++||..+++.+..++.+ ...+..+.|..+ +.+.+.+++.||+|++||++.......+.. ++. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC-CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 57899999999999999999999999886 778889999875 666899999999999999998866555542 333 35
Q ss_pred eeEEEEecCCCEEEEEcC----CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeec
Q 004270 271 IISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 271 v~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~ 345 (764)
..+++..-.++.+++|.. +-.|.+||++..... +-.....|...|++++|+| +.+.|++|+.||.+.+||+..
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 666666656777777753 678999999877532 2233468999999999999 778999999999999999865
Q ss_pred ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (764)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (764)
+.....+.
T Consensus 198 d~EeDaL~------------------------------------------------------------------------ 205 (376)
T KOG1188|consen 198 DNEEDALL------------------------------------------------------------------------ 205 (376)
T ss_pred CcchhhHH------------------------------------------------------------------------
Confidence 42111110
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECC
Q 004270 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~ 504 (764)
.. ..|...|..+.|..++ +.+.+-+..++..+|+++
T Consensus 206 ----------------------------------~v---------iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 206 ----------------------------------HV---------INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred ----------------------------------Hh---------hcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 00 1455566677776655 346666677777777777
Q ss_pred CCCeeeeEecC-------------cceEEEEEeecCCEEEEEeC-CCeEEEEEcc---C---CeEEEEeec-CCCCeeEE
Q 004270 505 GRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVAD-DLVIRLFDVV---A---LRMVRKFEG-HTDRITDF 563 (764)
Q Consensus 505 ~~~~~~~~~~~-------------~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~---~---~~~~~~~~~-h~~~i~~l 563 (764)
.+.....+..+ ..+.......+....+.++. -+...++-+. + .+.+..+.| |..-|.++
T Consensus 243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i 322 (376)
T KOG1188|consen 243 DGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI 322 (376)
T ss_pred CCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence 66543333221 11111111223445555444 4444444332 2 344566776 67778999
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
.|...+.++.||++||.+.+|..+
T Consensus 323 ~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hhhcccceeeccCCCceEEEEecC
Confidence 999889999999999999999974
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=3.8e-18 Score=153.10 Aligned_cols=289 Identities=17% Similarity=0.296 Sum_probs=208.9
Q ss_pred CceEEEEeccCCCCEEEEEEe--eCCCCEEEEEe----CCCcEEEEEC--CCceeeeeeecccccCeeEEEEecCCC---
Q 004270 213 DEELVTFTHSMRGAVTALAFS--SDGQPLLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEP--- 281 (764)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs--~d~~~~l~sg~----~dg~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~--- 281 (764)
++.+..+.. .-++.++.|+ ++.+..||.|+ ..+.|.|..+ ++++.+..-...|.-+++.+.|.|+..
T Consensus 35 ~~eiy~Y~a--p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 35 RKEIYTYNA--PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred cceEEEecC--CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 445566655 3578899998 55666888887 3456666544 455555444346899999999999863
Q ss_pred --EEEEEcCCCcEEEEEecCCCCCceeeEec-----cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeeccccccccc
Q 004270 282 --VLMSASADNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELS 353 (764)
Q Consensus 282 --~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-----~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~ 353 (764)
+|++++ ..+|+|.+...+....+...+ ..+..++++..|+. +-+++.+++-|-+..+||+.++..
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----- 185 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----- 185 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----
Confidence 555544 479999887544332222222 34567888888887 778888889999999998865310
Q ss_pred chhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc
Q 004270 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (764)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s 433 (764)
T Consensus 186 -------------------------------------------------------------------------------- 185 (364)
T KOG0290|consen 186 -------------------------------------------------------------------------------- 185 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~ 512 (764)
+.....+ .+|...|..++|...+ +.+++.|.||.||+||++..+.-..+
T Consensus 186 ----------------------~~vkTQL--------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 186 ----------------------GTVKTQL--------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred ----------------------cceeeEE--------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 0001111 3899999999999865 68899999999999999876544333
Q ss_pred e---c-CcceEEEEEeecC-CEEEEEe-CCCeEEEEEccCC-eEEEEeecCCCCeeEEEEcCC-CcEEEEEeCCCcEEEE
Q 004270 513 E---V-GCSLVKIVYHRVN-GLLATVA-DDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIW 584 (764)
Q Consensus 513 ~---~-~~~i~~~~~s~~~-~~la~~~-~d~~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~d-g~~l~s~s~dg~i~iw 584 (764)
- . +.+...++|++.. +++|+-. +...|.|.|++.. .++.++++|.+.|+.++|.|. ...|+|++.|..+.+|
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 2 2 3678889998844 5666654 4568999999864 578899999999999999995 4689999999999999
Q ss_pred EcCccc------eEEEEeeCCceEEEEEcC-CCCeEEEEEeCC
Q 004270 585 DVILAR------QIDAIHVDVSITALSLSP-NMDVLATAHVDQ 620 (764)
Q Consensus 585 d~~~~~------~~~~~~~~~~v~~l~~sp-~g~~lat~~~d~ 620 (764)
|+.+-- ++-.+.....|+.+.|++ .+++++.+....
T Consensus 316 Dl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred ecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence 997532 333445566799999996 678898887654
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=6.2e-19 Score=164.72 Aligned_cols=236 Identities=15% Similarity=0.205 Sum_probs=185.7
Q ss_pred EEEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCccc---ccceeeEecCCccccEEEEeCCCCCCEEEEEeC
Q 004270 86 VATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ 159 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~ 159 (764)
.....||+++|..+.| +.+.|||||+|.+|.||++..+.+. ..|+..+.+|...+-.+++||... |.|++++.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~ 152 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGS 152 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccC
Confidence 3347899999999996 6889999999999999999876653 356788899999999999999886 89999999
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (764)
|++|.+||+.+|+.+.++. |...|.++.|+.+|.+|++.+.|..|+|||.++++.+..-..|....-..+-|..+|. +
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 9999999999999999988 9999999999999999999999999999999999999888666455667778888998 6
Q ss_pred EEEEe---CCCcEEEEECCCceeeeee-ecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCC
Q 004270 240 LASGA---SSGVISIWNLEKRRLQSVI-REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 240 l~sg~---~dg~i~iwd~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
+.+|. .+..+.+||..+-+.-..+ .....+.|.---|.+|.+.+..+| .|+.||.|.+.........+..+ ...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f-~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF-SSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc-ccC
Confidence 66664 5788999997655322222 112456677777888888776655 59999999886653222222222 233
Q ss_pred CCCeeEEEecC
Q 004270 315 APPLCIRFYAN 325 (764)
Q Consensus 315 ~~v~~i~~~~~ 325 (764)
.+-..+.|.|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 45556666663
No 182
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.82 E-value=6.6e-17 Score=163.68 Aligned_cols=335 Identities=16% Similarity=0.169 Sum_probs=209.8
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270 152 NKV-IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (764)
Q Consensus 152 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 230 (764)
+.+ ++-..+|.|.+.|..+.+.+.++......-..+.++|||+++.+++.||.|.++|+.+++.+.++..+ .....+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceE
Confidence 344 44566899999999999999999875554456789999999999999999999999999999999875 567899
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc------cccCeeEEEEecCCCEEEEEcCC-CcEEEEEecCCCCC
Q 004270 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA------HDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGD 303 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~ 303 (764)
++++||++++++....+.+.++|.++.+.+..+..+ ....+.++..+|..+.++..-.| +.|-+-|+... .
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--~ 161 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--K 161 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--S
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--c
Confidence 999999955555567899999999999999888732 23467788889988866655554 55544444332 2
Q ss_pred ceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (764)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (764)
...... ...........|+|++++++.+. .+..+.++|..+.+....+..+..
T Consensus 162 ~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~------------------------- 215 (369)
T PF02239_consen 162 NLKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK------------------------- 215 (369)
T ss_dssp CEEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS-------------------------
T ss_pred ccceee-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc-------------------------
Confidence 222222 23445667788999998877653 455677777654332211110000
Q ss_pred ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
.|+.....+
T Consensus 216 ---------------------------------------p~~~~~~~~-------------------------------- 224 (369)
T PF02239_consen 216 ---------------------------------------PHPGPGANF-------------------------------- 224 (369)
T ss_dssp ---------------------------------------BEETTEEEE--------------------------------
T ss_pred ---------------------------------------ccccccccc--------------------------------
Confidence 000000000
Q ss_pred cCccccccccccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE----eCC
Q 004270 463 LDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV----ADD 536 (764)
Q Consensus 463 ~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~----~~d 536 (764)
.|.. .+.... ..+...++.-....+.+||..+.+.++++...+.-..+..||+++++.+. .+.
T Consensus 225 ---------php~~g~vw~~~--~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 225 ---------PHPGFGPVWATS--GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA 293 (369)
T ss_dssp ---------EETTTEEEEEEE--BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH
T ss_pred ---------cCCCcceEEeec--cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC
Confidence 1211 222222 22333333333346668999999999999988666889999999999998 456
Q ss_pred CeEEEEEccCCeEEEEeecC-CCCeeEEEEcCCCcEEEEEe--CCCcEEEEEcCccceEEEEeeC
Q 004270 537 LVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVILARQIDAIHVD 598 (764)
Q Consensus 537 ~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~s~dg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~ 598 (764)
+.|.|+|.++.+.+..+... ..++..+.|++||+++..+. .++.|.|||..+.+.+..+...
T Consensus 294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~ 358 (369)
T PF02239_consen 294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVP 358 (369)
T ss_dssp T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--
T ss_pred ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEee
Confidence 89999999999988887633 23589999999999766544 3347999999999999998743
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5e-20 Score=195.24 Aligned_cols=275 Identities=19% Similarity=0.274 Sum_probs=209.7
Q ss_pred ecCCcEEEEEccC--CcccccceeeEecCCccccEEEEeCCCCC--CEEEEEeCCCcEEEEeCCCC------eEEEEEcC
Q 004270 110 DIDGNMFIWAFKG--IEENLAPVGHVKLDDKFTPTCIMHPDTYL--NKVIVGSQEGSLQLWNISTK------KKLYEFKG 179 (764)
Q Consensus 110 ~~dg~v~vWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~l~~~~~dg~i~iwd~~~~------~~~~~~~~ 179 (764)
+.+.++-+|.++- .+....++..+.....| ..++|.+.+.. ..|+.|..||.|.+||...- ..+.+...
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF-~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRF-NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK 114 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccc-eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence 4455666665543 33222334455444444 34555555521 25889999999999997652 35667789
Q ss_pred CCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEE-eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 180 WGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 180 h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
|.+.|..+.|++... +||+|+.||.|.|||+..-+.-... .....+.|.+++|...-.++|++++.+|.+.|||++..
T Consensus 115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 999999999999765 9999999999999999976655555 23236789999999888889999999999999999998
Q ss_pred eeeeeeecccc--cCeeEEEEecCCC-EEEEEcCCC---cEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEE
Q 004270 258 RLQSVIREAHD--NAIISLHFFANEP-VLMSASADN---SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL 330 (764)
Q Consensus 258 ~~~~~~~~~h~--~~v~~l~~~~~~~-~l~s~~~d~---~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~ 330 (764)
+.+-.+. -|. ..+..++|+|+.. .+++++.|. .|.+||++... ..++.+.+|...|.++.|++ |.++++
T Consensus 195 ~pii~ls-~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 195 KPIIKLS-DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred Ccccccc-cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCCchhhh
Confidence 7777666 333 3478999999864 666666653 58999987765 45666689999999999999 558999
Q ss_pred EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (764)
Q Consensus 331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (764)
+++.|+.+.+|+..+++...++..
T Consensus 271 SsgkD~~ii~wN~~tgEvl~~~p~-------------------------------------------------------- 294 (1049)
T KOG0307|consen 271 SSGKDNRIICWNPNTGEVLGELPA-------------------------------------------------------- 294 (1049)
T ss_pred cccCCCCeeEecCCCceEeeecCC--------------------------------------------------------
Confidence 999999999999988776665533
Q ss_pred eecceeecCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECcCCc
Q 004270 411 VLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGI 457 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~~g~i~i~~~~~~~ 457 (764)
....+..+.|.|..- .+++++-+|.|.||++.++.
T Consensus 295 ------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 ------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 226677888888664 88899999999999998765
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=9.9e-17 Score=163.90 Aligned_cols=281 Identities=11% Similarity=0.092 Sum_probs=183.0
Q ss_pred EEEcCCeEEEEEccC-Cc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC-CceeeeeeecccccCeeE
Q 004270 198 VGCSDGKIHVHNVRY-DE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREAHDNAIIS 273 (764)
Q Consensus 198 ~g~~dg~i~iwd~~~-~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~h~~~v~~ 273 (764)
+...++.|.+|++.+ ++ .+..+.. .+....++++|+++.+++++..++.|.+|++. +++....-.....+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 336689999999974 33 3344432 35678899999999333444568899999986 343321111123345778
Q ss_pred EEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeeccccccc
Q 004270 274 LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRE 351 (764)
Q Consensus 274 l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~ 351 (764)
++|+|+++++++++. ++.|.+|+++........+... .+...+.+++++|+++++++++ .++.|.+||+.+......
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998888764 8899999997532222223222 2334577889999999886555 568999999865322110
Q ss_pred ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (764)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (764)
... ..... ........++
T Consensus 164 ~~~------------------------------------------------------------~~~~~--~~g~~p~~~~ 181 (330)
T PRK11028 164 QEP------------------------------------------------------------AEVTT--VEGAGPRHMV 181 (330)
T ss_pred cCC------------------------------------------------------------Cceec--CCCCCCceEE
Confidence 000 00000 0114456789
Q ss_pred EccCCCEEEEEec-CCcEEEEECcC--Ccc--cceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCC
Q 004270 432 ISACGNFAVLGTA-GGWIERFNLQS--GIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG 505 (764)
Q Consensus 432 ~s~~g~~l~~g~~-~g~i~i~~~~~--~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~ 505 (764)
|+|+|+++++... ++.|.+|++.. +.. ...+...+. . ..+......+.++|++++++++. .++.|.+|++..
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~-~-~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA-D-FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC-c-CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 9999999988877 89999999974 222 122110000 0 01222345689999999998885 478999999865
Q ss_pred CC----eeeeEecCcceEEEEEeecCCEEEEEeC-CCeEEEEEcc
Q 004270 506 RD----LKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV 545 (764)
Q Consensus 506 ~~----~~~~~~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~ 545 (764)
.. .+...........+.++|+|++|+++.. +++|.+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 260 DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 43 2233333345678999999999998775 8899999874
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.7e-17 Score=142.95 Aligned_cols=268 Identities=17% Similarity=0.272 Sum_probs=193.2
Q ss_pred ceEEEEEeCCeEEEEECCe---EEEEec-----------Cc-eEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccC
Q 004270 58 KIRALASYRDYTFAAYGNH---IAVVKR-----------AH-QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKG 122 (764)
Q Consensus 58 ~I~~~~~~~~~~~~a~g~~---i~vw~~-----------~~-~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~ 122 (764)
.|.+-+++|.++|++.|+. |.+... ++ .+...++|.++|..+.|-..+|++|+ ||.|+=|....
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeehh
Confidence 4555678899888888765 777752 22 23447899999999999999999998 69999998865
Q ss_pred Cccc---------ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCC
Q 004270 123 IEEN---------LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL 193 (764)
Q Consensus 123 ~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~ 193 (764)
.+.. ..|.+.-...-..+..+.+.|.. +-++.++.|+.++-||+++|+..+++++|.+-|.+++--...
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 4431 11111111122345566677887 778888899999999999999999999999999999986666
Q ss_pred CEEEEEEcCCeEEEEEccCCceEEEEecc---------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHS---------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (764)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 264 (764)
..+++|++||++++||.++++.+..+..- -...|-+++-+.| .|++|+ ...+.+|+++..++...+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEEEe
Confidence 67999999999999999999988876521 1345677776544 777665 5689999999999888886
Q ss_pred cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEE
Q 004270 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLF 341 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~ 341 (764)
-...+..+.|..+ .+++++..+.|.-|.+... +...........++..+....- ++-.++....+.++
T Consensus 245 --ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 --IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred --cccceeEeeeecc--eEEEeccccceeeeeeccE-----EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 6677888999655 6888888889999976532 2222233333444444443332 33345555555554
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=3.9e-18 Score=152.78 Aligned_cols=226 Identities=19% Similarity=0.266 Sum_probs=168.0
Q ss_pred CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-------CcEEEEeCCCC---------eEEE
Q 004270 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-------GSLQLWNISTK---------KKLY 175 (764)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-------g~i~iwd~~~~---------~~~~ 175 (764)
|+.|.+-+++.+.-... ...+..+.+.+..++-+|... ..+++...+ -...||.+... +++.
T Consensus 39 dNqVhll~~d~e~s~l~-skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELL-SKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecCccchhh-hhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 66777777665433111 233444566777777777763 344444331 23678987532 3344
Q ss_pred EEc-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce-EEEEec----cCCCCEEEEEEee--CCCCEEEEEeCCC
Q 004270 176 EFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE-LVTFTH----SMRGAVTALAFSS--DGQPLLASGASSG 247 (764)
Q Consensus 176 ~~~-~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~-~~~~~~----~~~~~v~~l~fs~--d~~~~l~sg~~dg 247 (764)
.+. .+-+.|.|+.|.|+++.+|+-. |..|.+|++..+.. +..+.. .+....++-+|+| ||. .+++ ..|+
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t-t~d~ 193 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT-TSDS 193 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE-eCCC
Confidence 443 3456899999999999998876 78999999998776 333332 2244678889998 455 4554 4589
Q ss_pred cEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-C
Q 004270 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N 325 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~ 325 (764)
++..||+++.+....+..+|...|..+.|+|+.+ +|++++.||.|++||.+... ..+..+.+|...|.+++|+| -
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc
Confidence 9999999999999999989999999999999865 78999999999999987654 56788899999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEEeec
Q 004270 326 GRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~ 345 (764)
.++++++|.|..+.+|....
T Consensus 271 dqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ceEEEecCCCceeEEEeccc
Confidence 67889999999999997643
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=153.36 Aligned_cols=291 Identities=17% Similarity=0.224 Sum_probs=201.4
Q ss_pred ceEEEecccccceEEEEEe-CCEEEEEecCCcEEEEEccCCcccccceeeEe-cCCccccEEEEeCCCCCCEEEEEeCCC
Q 004270 84 HQVATWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (764)
Q Consensus 84 ~~~~~~~~h~~~v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (764)
.....+++|.+.|+++.|+ ..+|.++...|.|++|++.+... ...+. ++..++...-.-|.+ .+.+-+.|+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~~it~lq~~p~d---~l~tqgRd~ 77 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD----LPLIRLFGRLFITNLQSIPND---SLDTQGRDP 77 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCcc----chhhhhhccceeeceeecCCc---chhhcCCCc
Confidence 3456688999999999995 56899999999999999999876 55565 344555555555544 588889999
Q ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEcC-----CC----CEEEEEEcCC-eEEEEEccCCceEEEEe---ccCCCCEE
Q 004270 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSP-----AL----DVVAVGCSDG-KIHVHNVRYDEELVTFT---HSMRGAVT 228 (764)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-----~~----~~la~g~~dg-~i~iwd~~~~~~~~~~~---~~~~~~v~ 228 (764)
.+.+|++.-+..+.. |.-.++++.|.+ .+ ..++.-+... .+++-|......+.... ....+.+.
T Consensus 78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 78 LLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred eEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 999999976543322 223334444433 21 1122211110 01222221111111111 11135666
Q ss_pred EEEEeeC--CCCEEEEEeCCCcEEEEECCCcee----------eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270 229 ALAFSSD--GQPLLASGASSGVISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 229 ~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~~----------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (764)
+..+.-+ ...+|++|..+|.+.+||+.++.. ..... .|..+|.++.|.+.-..=++++.+..+..|+
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh-hccCcceeeeechhhcCCcCCCccccceeee
Confidence 6664322 334677888999999999998732 33333 6899999999988766678888888999999
Q ss_pred ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (764)
++-..+....-..+.-....+..++.-||++.++++|.|+.+|+|+.++......+.
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk----------------------- 290 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK----------------------- 290 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-----------------------
Confidence 887655444433444445678899999999999999999999999988766554432
Q ss_pred eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
.|...+.+++|+|+.+.++.++.|++|.+|++
T Consensus 291 ---------------------------------------------yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 ---------------------------------------------YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---------------------------------------------hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 46689999999999999999999999999986
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.7e-19 Score=171.99 Aligned_cols=270 Identities=21% Similarity=0.341 Sum_probs=199.5
Q ss_pred eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC----CCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~----~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
++. .|...|+.+.|.|..+.|++++.||.+++|++.. .......+..+.+|.++|.|+++.+++.++++|+.||+
T Consensus 289 tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 444 7899999999999999999999999999999832 22345677888999999999999999999999999999
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
|+.|++.......... .. ....
T Consensus 368 I~~w~~p~n~dp~ds~-------------------------------------------------------dp---~vl~ 389 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSY-------------------------------------------------------DP---SVLS 389 (577)
T ss_pred eeeeccCCCCCccccc-------------------------------------------------------Cc---chhc
Confidence 9999875221110000 00 0111
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCC
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG 496 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg 496 (764)
....+|...+..+++|+....|++.+.||+++.|+...... ..+.. ....+.-.++.+-... ...++...-+
T Consensus 390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------~~e~g~Plsvd~~ss~~a~~~~s~~~~ 462 (577)
T KOG0642|consen 390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------PKEHGYPLSVDRTSSRPAHSLASFRFG 462 (577)
T ss_pred cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC------ccccCCcceEeeccchhHhhhhhcccc
Confidence 22336778999999999999999999999999999987766 33321 1122233444443322 1222222222
Q ss_pred eEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270 497 DIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d 568 (764)
.-.++++.....+..+... ..+..+..+|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+
T Consensus 463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n 542 (577)
T KOG0642|consen 463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN 542 (577)
T ss_pred cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence 2333344444433333321 45778899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270 569 GKWLLSSGMDGSLRIWDVILARQIDAIHV 597 (764)
Q Consensus 569 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 597 (764)
|.+|++++.|+.+++|.+....++.....
T Consensus 543 g~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred CceEEeecCCceeehhhccchheeecccc
Confidence 99999999999999999987666655443
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.8e-19 Score=183.48 Aligned_cols=287 Identities=21% Similarity=0.271 Sum_probs=225.6
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
+.+..+.+|..+|.|..|...|.++++|+.|..++||...++.++....+| .+.|+.++.+.++. ++++++.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs~~n~-~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVSSNNT-MIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccchhhh-hhhhcccCceEEE
Confidence 344556799999999999999999999999999999999999999999876 89999999998877 8999999999999
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC--CCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (764)
|.+..+.++..+. +|++.|++++|+|-. +.+.||++++||.+-.. -.++.... ....-+.++.|...+..+
T Consensus 259 Wrl~~~~pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~--~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF--TEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EecCCCchHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc--ccccceeeeecccccccc
Confidence 9999999999999 999999999999965 77889999999987221 11122221 123456677777788889
Q ss_pred EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
+|++.|+.-+.|.........
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~----------------------------------------------------------- 352 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRS----------------------------------------------------------- 352 (1113)
T ss_pred ccccCCcccccchhhHhhhhc-----------------------------------------------------------
Confidence 999999988877653211100
Q ss_pred eeecceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-
Q 004270 410 FVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT- 487 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~- 487 (764)
..+.-+..+.+ ..+.+++-.+-.+.+|++.+|....... +|...+..+.++|-+.
T Consensus 353 ---------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--------ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 353 ---------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--------GHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ---------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--------ccccceeeeeecCCCcH
Confidence 00000111111 1345556667788899999998887765 8999999999999664
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270 488 LMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (764)
Q Consensus 488 ~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~ 549 (764)
...+++.||...|||+-.+.+++.+. .+..+....||+||..++...+-|.++|.....++.
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 45689999999999999888777664 457888899999999999999999999987655543
No 190
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=8.8e-20 Score=173.93 Aligned_cols=296 Identities=17% Similarity=0.241 Sum_probs=225.5
Q ss_pred CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270 314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (764)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (764)
...+..+.|+.+|++++.|+..|.+..+|..+.....++...
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-------------------------------------- 170 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-------------------------------------- 170 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh--------------------------------------
Confidence 345678999999999999999999999999888776665331
Q ss_pred EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccc
Q 004270 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473 (764)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h 473 (764)
..|..+.|-.+.++++++ ....+++||-. |..+..+ ..
T Consensus 171 -------------------------------Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHCl---------k~ 208 (545)
T KOG1272|consen 171 -------------------------------ETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCL---------KR 208 (545)
T ss_pred -------------------------------hhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeeh---------hh
Confidence 456667777777777776 55678888865 3333333 23
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEE
Q 004270 474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 552 (764)
Q Consensus 474 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~ 552 (764)
...|..+.|-|..-+|++++..|.++.-|+.+|+++..+... +.+..|+-+|-+..+-+|..+|+|.+|.-...+++..
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 457888999999999999999999999999999999998776 7888999999999999999999999999999999999
Q ss_pred eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc--
Q 004270 553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC-- 630 (764)
Q Consensus 553 ~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~-- 630 (764)
+..|.++|.++++.++|+|+||++.|..++|||+..-..+.++..+.+...++||..| +||.+-.+ .|.+|.-..
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~--~v~iw~d~~~~ 365 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD--HVQIWKDALKG 365 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC--eeeeehhhhcC
Confidence 9999999999999999999999999999999999998888888777789999998766 44444434 399996421
Q ss_pred --------------------ccCCCCCcccCCCCCceeeecCCCccCccCccCCCCC--CCCCccCCCCCCCCCCCCCcc
Q 004270 631 --------------------MFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSS--QPDVHRTDRVPKDSFGLPTFK 688 (764)
Q Consensus 631 --------------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 688 (764)
.|.|......+.....+..+-+|+.++..-+..+... ...+..|. +.....+
T Consensus 366 s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetrKQRqE~------EVr~LLe 439 (545)
T KOG1272|consen 366 SGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETRKQRQEK------EVRSLLE 439 (545)
T ss_pred CCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhhhHHhHH------HHHHHHh
Confidence 1222222223333445566778887766655433322 11111121 1233467
Q ss_pred CcccCeeEec
Q 004270 689 QQIPDLVTLS 698 (764)
Q Consensus 689 ~~~~~~~~ls 698 (764)
.|++++|+|-
T Consensus 440 KippElIsLd 449 (545)
T KOG1272|consen 440 KIPPELISLD 449 (545)
T ss_pred hCChHhEEec
Confidence 7889999885
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=161.66 Aligned_cols=226 Identities=20% Similarity=0.287 Sum_probs=162.2
Q ss_pred cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec--CCCEEEEEcCCCcEEEEEecC
Q 004270 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDT 299 (764)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~i~vw~~~~ 299 (764)
+|.+.|.++.|+.+|. +|++|+.|-.+.|||.-..++++.+..+|...|.++.|.| +.+++++|..|..|+++|++.
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 4589999999999999 9999999999999999999999999999999999999999 456999999999999999985
Q ss_pred CCC------CceeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270 300 TDG------DPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 372 (764)
Q Consensus 300 ~~~------~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (764)
..+ ..........|...|..++..|++ ..+.+++.||+++-+|++.......-....
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~---------------- 190 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP---------------- 190 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc----------------
Confidence 321 223445566799999999999988 788999999999999998653322110000
Q ss_pred cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEE
Q 004270 373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERF 451 (764)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~ 451 (764)
..+.......-...+++++|.. .+|++|+++-..++|
T Consensus 191 ------------------------------------------~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY 228 (758)
T KOG1310|consen 191 ------------------------------------------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY 228 (758)
T ss_pred ------------------------------------------HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence 0000000111467788999865 688999999999999
Q ss_pred ECcCCccc----c--eecCcc----cc-cccccc-----------CcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270 452 NLQSGISR----G--SYLDMS----ER-SNYAHN-----------GEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (764)
Q Consensus 452 ~~~~~~~~----~--~~~~~~----~~-~~~~h~-----------~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 506 (764)
|.+..... . ....+. .+ -..+|. ..++-++|+|+|.-|+..-....|+++|+..+
T Consensus 229 D~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 229 DRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred hhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 94211110 0 000000 00 001221 12567889999977766665668999988654
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=2e-16 Score=147.36 Aligned_cols=175 Identities=19% Similarity=0.264 Sum_probs=144.5
Q ss_pred CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC----cceEEE
Q 004270 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI 521 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~i~~~ 521 (764)
..+++++...+..+..+ .....|.++.++. +.|+.+-.+ .|+|||+++.++++++..- ..+.++
T Consensus 68 r~Lkv~~~Kk~~~ICe~---------~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEI---------FFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred ceEEEEEcccCceEEEE---------ecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEee
Confidence 35888888877776665 3456788888864 356655554 4999999999999988654 445666
Q ss_pred EEeecCCEEEEEe--CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCc-EEEEEcCccceEEEEeeC
Q 004270 522 VYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS-LRIWDVILARQIDAIHVD 598 (764)
Q Consensus 522 ~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~ 598 (764)
.+++.+.++|.-+ ..|.|.+||..+.+.+..+..|.+++.+++|+++|.+|||+|+.|+ |||+.+++|+.+..|+-.
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence 6666777998754 4689999999999999999999999999999999999999999887 699999999999999744
Q ss_pred C---ceEEEEEcCCCCeEEEEEeCCCeEEEEecccccC
Q 004270 599 V---SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS 633 (764)
Q Consensus 599 ~---~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~ 633 (764)
. .|.+++|+||+++|++++..+ +|+++.++....
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~Te-TVHiFKL~~~~~ 252 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTE-TVHIFKLEKVSN 252 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCC-eEEEEEeccccc
Confidence 3 399999999999999998887 899999987663
No 193
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-18 Score=167.12 Aligned_cols=289 Identities=20% Similarity=0.336 Sum_probs=221.3
Q ss_pred cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecC
Q 004270 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDT 299 (764)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~ 299 (764)
.|.+.|..+.|...|. .|++|+.|..|.+||...++....+..+|...|....|.|. ...+++++.||.+++=.+..
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4589999999999999 99999999999999999999998888899999999999884 45899999999999876654
Q ss_pred CCCCceeeEeccCCCCCCeeEEEecC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270 300 TDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (764)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (764)
... ..-...+..|.++|..++..|+ ...|.+++.|+.+.-+|++.+.....+..
T Consensus 219 t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c------------------------ 273 (559)
T KOG1334|consen 219 TGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC------------------------ 273 (559)
T ss_pred ccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee------------------------
Confidence 432 2224556689999999999994 46788999999999888765533221110
Q ss_pred eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc
Q 004270 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (764)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~ 458 (764)
-
T Consensus 274 ---------------------------------------------------------------r---------------- 274 (559)
T KOG1334|consen 274 ---------------------------------------------------------------R---------------- 274 (559)
T ss_pred ---------------------------------------------------------------e----------------
Confidence 0
Q ss_pred cceecCccccccccccC---cEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCee------eeE-------ecCcceEEE
Q 004270 459 RGSYLDMSERSNYAHNG---EVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLK------SRW-------EVGCSLVKI 521 (764)
Q Consensus 459 ~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~------~~~-------~~~~~i~~~ 521 (764)
..+.. ....++.+|.+. .+++++.|..+++||...-... ..+ .....|+++
T Consensus 275 ------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 275 ------------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred ------------ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 01111 344566666554 6777788888888876532211 111 223679999
Q ss_pred EEeecCCEEEEEeCCCeEEEEEccC--C----------eEEEE-eecCCCC--eeEEE-EcCCCcEEEEEeCCCcEEEEE
Q 004270 522 VYHRVNGLLATVADDLVIRLFDVVA--L----------RMVRK-FEGHTDR--ITDFC-FSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 522 ~~s~~~~~la~~~~d~~i~v~d~~~--~----------~~~~~-~~~h~~~--i~~l~-~s~dg~~l~s~s~dg~i~iwd 585 (764)
+|+.++.-|.++..|-.|+++.-.- | ..+.. ++||... |..+- |-|...|+++||.-|.|.||+
T Consensus 343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 9998888888888899999995332 2 22333 8899754 55665 467889999999999999999
Q ss_pred cCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 586 VILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 586 ~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
-.+++.+..+.+... |+||.=+|--..||+++-|.. |+||.-
T Consensus 423 K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~D-VKIWTP 465 (559)
T KOG1334|consen 423 KKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHD-VKIWTP 465 (559)
T ss_pred cchhHHHHHhhcccceEeccCCCCCCchhhccCCccc-eeeecC
Confidence 999999988877655 999999999999999999995 999986
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-16 Score=138.03 Aligned_cols=285 Identities=15% Similarity=0.165 Sum_probs=204.8
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEEecCCC------CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 270 ~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
.|.+-+++|.+++|+.|..+|.|.+..+.... .....+....+|.++++.++|+ ..+|++++ ||.++-|.-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 46667889999999999999999999876431 1123344457999999999998 34677776 599999976
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
+....... .-++|.+..... .....
T Consensus 89 ~E~~es~~-------------------------------------------------~K~lwe~~~P~~------~~~~e 113 (325)
T KOG0649|consen 89 NEEEESLA-------------------------------------------------TKRLWEVKIPMQ------VDAVE 113 (325)
T ss_pred hhhhhhcc-------------------------------------------------chhhhhhcCccc------cCccc
Confidence 54332100 011122111100 00011
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
-..|.++.+.|..+-++.++.|+.++-||+++|+....+. +|.+.|.+++--.....+++|+.||++|+||.
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDT 185 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEec
Confidence 2578899999999988888899999999999999999986 99999999998666667999999999999999
Q ss_pred CCCCeeeeEecC-----------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEE
Q 004270 504 KGRDLKSRWEVG-----------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572 (764)
Q Consensus 504 ~~~~~~~~~~~~-----------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l 572 (764)
++++.+..+... ..|.+ ..-+...+++|. ...+.+|.++..++...|. -..++..+.|-.| .+
T Consensus 186 kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~v 259 (325)
T KOG0649|consen 186 KTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CV 259 (325)
T ss_pred cccceeEEeccccChhhcCcccCceeEE--EeccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eE
Confidence 999998887643 22333 334466776664 5689999999998888776 4567888889654 67
Q ss_pred EEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 573 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 573 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
++++..+.|.-|.+. |.+-..+...++ +++.+|+..--.++++....+.+.+..
T Consensus 260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 788888899999875 666666665554 777777765545555444433466554
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.7e-18 Score=166.56 Aligned_cols=264 Identities=20% Similarity=0.333 Sum_probs=191.4
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC--------CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~--------~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d 246 (764)
.++..|...|+.++|.|....|++++.||.+.+|+++. -+++.+|..| .++|.|+++.+++. .+++|+-|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~-~~ysgg~D 365 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGE-HCYSGGID 365 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCce-EEEeeccC
Confidence 36778899999999999999999999999999999932 2467788776 99999999999999 89999999
Q ss_pred CcEEEEECCCc----------eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270 247 GVISIWNLEKR----------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (764)
Q Consensus 247 g~i~iwd~~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (764)
|+|+.|++... .....+. ||.+.|+.+++++....|++++.||+++.|+..... +...... ...+-
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~--~~~f~~~-~e~g~ 441 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES--PCTFGEP-KEHGY 441 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcC--ccccCCc-cccCC
Confidence 99999965421 2334455 999999999999999999999999999999764432 1112111 22233
Q ss_pred CeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270 317 PLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (764)
Q Consensus 317 v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (764)
..++.+-... .+.++ +..++.+++........+..
T Consensus 442 Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~----------------------------------------- 477 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLI----------------------------------------- 477 (577)
T ss_pred cceEeeccchhHhhhh---hcccccccchhhhhhhheee-----------------------------------------
Confidence 4455554322 12222 22333333322211111000
Q ss_pred eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccC
Q 004270 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (764)
Q Consensus 396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (764)
+ .....+.......+..+...|.+.+.+.+..++.|+++|..++..+.... .|..
T Consensus 478 ---------~--------~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--------a~~~ 532 (577)
T KOG0642|consen 478 ---------F--------ESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--------AHKD 532 (577)
T ss_pred ---------c--------cccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee--------eccc
Confidence 0 00000001112456777888899999999999999999999999998875 8999
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 004270 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 513 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 513 (764)
.++++++.|+|-+|++++.|+.+++|.+....+.....
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 99999999999999999999999999998776655443
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=3.9e-17 Score=146.48 Aligned_cols=251 Identities=16% Similarity=0.228 Sum_probs=190.7
Q ss_pred ecccccceEEEEE---eCCEEEEEecC-------CcEEEEEccCCccc-----ccceeeEe-cCCccccEEEEeCCCCCC
Q 004270 89 WSRHSAKVNLLLL---FGEHILSIDID-------GNMFIWAFKGIEEN-----LAPVGHVK-LDDKFTPTCIMHPDTYLN 152 (764)
Q Consensus 89 ~~~h~~~v~~l~~---~g~~l~s~~~d-------g~v~vWd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~p~~~~~ 152 (764)
+.-|.+.|..++. +...|+++-.+ -.+.||.+...... ...+..+. .+.+.+.++.|.|++ .
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns--~ 136 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS--D 136 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC--C
Confidence 6778899999883 66777776542 13789998764432 12233333 223455677799988 7
Q ss_pred EEEEEeCCCcEEEEeCCCCeE-EEEEc-----CCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCC
Q 004270 153 KVIVGSQEGSLQLWNISTKKK-LYEFK-----GWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR 224 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~-~~~~~-----~h~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~ 224 (764)
++++-. +..|.+|++..+.. +..+. +|....++-+|+| +++.+++.+ |+++..||+++.++...+...|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence 888775 77899999987765 44332 3566778889998 677787754 68999999999999999988888
Q ss_pred CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeeecccccCeeEEEEecC-CCEEEEEcCCCcEEEEEecCCCC
Q 004270 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDG 302 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~ 302 (764)
..|..+.|.|+.+++|++|+.||.|++||.+.-+ ++..+. +|...|.++.|+|. .++++++|.|..|.+|....-..
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 8999999999999999999999999999998764 556666 99999999999995 45889999999999995432210
Q ss_pred -------------------------CceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEee
Q 004270 303 -------------------------DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 303 -------------------------~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~ 344 (764)
.-..+..+..|...|.+++|+. |.-.+++-+.||.+.|=.+.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0112345677999999999998 66677888999998886653
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=4.6e-16 Score=157.54 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=208.2
Q ss_pred EEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Q 004270 107 LSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS 186 (764)
Q Consensus 107 ~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 186 (764)
++-..+|.|.|.|..+.+. +..+......-....++|++ +++++++.||.|.++|+.+++.+.+++. .....+
T Consensus 10 V~~~~~~~v~viD~~t~~~----~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKV----VARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG 82 (369)
T ss_dssp EEEGGGTEEEEEETTT-SE----EEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred EEecCCCEEEEEECCCCeE----EEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence 4555689999999999888 77887655554556789999 8899999999999999999999999987 455688
Q ss_pred EEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEecc------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270 187 CVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHS------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (764)
Q Consensus 187 ~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~ 259 (764)
+++|+||++++++. ..+.+.++|.++.+.+..+... ....+.++..+|.+..++++--..+.|.+.|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999875 5799999999999999887643 1346788888888874444555568899999877654
Q ss_pred eeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEec----cCCCCCCeeEEEecCCCEEEEEeC
Q 004270 260 QSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSAGQ 334 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~~~ 334 (764)
+...............|.|++++++.+ ..++.|-++|.... ...... ..|..+...+ .+|....+-..+.
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~ 237 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSG 237 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEB
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccc----eEEEEeeccccccccccccc-cCCCcceEEeecc
Confidence 433222345567789999999987664 55778888876544 222221 1233333332 2332211111111
Q ss_pred CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecc
Q 004270 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (764)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 414 (764)
.+.
T Consensus 238 ~~~----------------------------------------------------------------------------- 240 (369)
T PF02239_consen 238 LGY----------------------------------------------------------------------------- 240 (369)
T ss_dssp SSS-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 111
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE--
Q 004270 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-- 492 (764)
Q Consensus 415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-- 492 (764)
..+..-....+.+|+..+.+....+. ...+. ..+..+|+++++...
T Consensus 241 -----------------------~~~~~ig~~~v~v~d~~~wkvv~~I~--------~~G~g-lFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 241 -----------------------FAIPLIGTDPVSVHDDYAWKVVKTIP--------TQGGG-LFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp -----------------------SEEEEEE--TTT-STTTBTSEEEEEE---------SSSS---EE--TT-SEEEEE-T
T ss_pred -----------------------eecccccCCccccchhhcCeEEEEEE--------CCCCc-ceeecCCCCccEEeecc
Confidence 11111111233355556666666553 33344 778889999999988
Q ss_pred --eCCCeEEEEECCCCCeeeeEecCc--ceEEEEEeecCCEEEEEeCC--CeEEEEEccCCeEEEEee
Q 004270 493 --GYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFE 554 (764)
Q Consensus 493 --~~dg~v~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~d--~~i~v~d~~~~~~~~~~~ 554 (764)
...+.|.++|.++.+....+.... .+..+.|+++|+.+.++..+ +.|.|||..+.+.+.++.
T Consensus 289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 455899999999998887776554 49999999999977666543 479999999999998887
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=8.5e-17 Score=166.74 Aligned_cols=284 Identities=14% Similarity=0.179 Sum_probs=202.7
Q ss_pred CcEEEEECCCc-eeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCC--ceeeEeccCCCCCCeeEEE
Q 004270 247 GVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 247 g~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v~~i~~ 322 (764)
+.+.+|+++.. .+...+ .-...|+++.|+|.. .+++.|..+|.|.+||+...... ...-.....|..++..+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999887 333333 367899999999955 57778888999999999877552 2233344578999999999
Q ss_pred ecCC--CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 323 YANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 323 ~~~~--~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
..+. .-+++++.||.|..|+++.-....+........
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----------------------------------------- 338 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----------------------------------------- 338 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhccccccc-----------------------------------------
Confidence 8744 449999999999999876544322211100000
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 479 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 479 (764)
+ ..........++++.|.+. -+.+++|+..|.|..-+....................|.+.|.+
T Consensus 339 --------------~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 339 --------------H-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA 403 (555)
T ss_pred --------------c-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence 0 0000112356788888774 47799999999998855544333331111111123478999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECC-CCCeeeeEecC-cceEEEEEeecC-CEEEEEeCCCeEEEEEccCC--eEEEEee
Q 004270 480 VACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL--RMVRKFE 554 (764)
Q Consensus 480 l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d~~i~v~d~~~~--~~~~~~~ 554 (764)
+.++|-+..++..+.|.++++|... ...++..+..+ ..+++++|||-. ..++++..||.+.+||+... +++.+..
T Consensus 404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 9999988766666669999999988 66666666655 559999999965 47778888999999998654 4455555
Q ss_pred cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 555 ~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
-+....+.+.|+++|+.|+.|...|++.+|++..
T Consensus 484 ~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5566778888999999999999999999999964
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.3e-17 Score=170.00 Aligned_cols=290 Identities=18% Similarity=0.313 Sum_probs=208.4
Q ss_pred CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc--cccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCC
Q 004270 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD 301 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~ 301 (764)
+...+.|+|-.. .+++++..-.|++||.+.++.+..+..+ ....|+.+.+..+ ..++++++.||.||||+--...
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 456788888877 7888887789999999999988777632 2457899998763 4589999999999999633222
Q ss_pred -CCceeeEeccCC-------CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 302 -GDPRLLRFRSGH-------SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 302 -~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
+.++++....+- .+.-.-+.|.....+|+++|.-+.|++||.........+..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~------------------- 1205 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY------------------- 1205 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------------------
Confidence 444555433222 11223455666556777777788899999876655444322
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEE
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFN 452 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~ 452 (764)
+....++++.-+. .|+.+++|..||.|++||
T Consensus 1206 ------------------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1206 ------------------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred ------------------------------------------------CCCccceeecccccCCceEEEeecCCceEEee
Confidence 1224555554443 469999999999999999
Q ss_pred CcCCcccceecCccccccccccCc--EEEEEECCCCC-EEEEEeCCCeEEEEECCCCCeeeeE--e----cCcceEEEEE
Q 004270 453 LQSGISRGSYLDMSERSNYAHNGE--VVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRW--E----VGCSLVKIVY 523 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~--~----~~~~i~~~~~ 523 (764)
.+......... ..+.|... |..+.+.+.|- .|++|+.||.|++||++.......+ . .++..+++..
T Consensus 1238 ~R~a~~ds~v~-----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1238 RRMAPPDSLVC-----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred cccCCccccce-----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence 87654421111 11477777 99999988764 5999999999999999874222222 1 2345999999
Q ss_pred eecCCEEEEEeCCCeEEEEEccCCeEEEEeec-------CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 524 s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~-------h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 590 (764)
+++...+|+|+. +.|.||++... .+..++. ..+.+.+++|+|.--+||.|+.|.+|.||..+.++
T Consensus 1313 H~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1313 HEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999999999998 99999998743 3333332 23568999999998899999999999999877654
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=3.9e-16 Score=151.76 Aligned_cols=453 Identities=13% Similarity=0.198 Sum_probs=270.9
Q ss_pred CCCcceEEEEEeCC-eEEEEECCe-EEEEec-Cc---eEEEecccccceEEEEE---------eCCEEEEEecCCcEEEE
Q 004270 54 QLPKKIRALASYRD-YTFAAYGNH-IAVVKR-AH---QVATWSRHSAKVNLLLL---------FGEHILSIDIDGNMFIW 118 (764)
Q Consensus 54 ~~~~~I~~~~~~~~-~~~~a~g~~-i~vw~~-~~---~~~~~~~h~~~v~~l~~---------~g~~l~s~~~dg~v~vW 118 (764)
.|...+.|+.++.+ ..+.++.++ +.+|.. .+ ++..+.. ..--+.+.+ ..+.++.++.||.+.+-
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCc-ccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 45566677777665 445555444 666642 22 1221111 111111111 23568888889998887
Q ss_pred EccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 004270 119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAV 198 (764)
Q Consensus 119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~ 198 (764)
+-...- -+.++.|.+.+.+..++|+| .-|++++.||.|++|. ++|-+..++-....+|.|++|.|+.+-++.
T Consensus 91 ~k~~rV-----E~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 91 NKSARV-----ERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred cccchh-----hhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 754432 25666788888888899999 7899999999999998 677776667667889999999999877665
Q ss_pred EEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec
Q 004270 199 GCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA 278 (764)
Q Consensus 199 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~ 278 (764)
+.. +.+.|=.+.....+...+.| .+-|.++.|++.+. ++++|+.|-..++||. .|..+..-. .|+.+|++++|.|
T Consensus 163 c~g-~h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~~s~-lI~sgGED~kfKvWD~-~G~~Lf~S~-~~ey~ITSva~np 237 (737)
T KOG1524|consen 163 CQG-GHISIKPLAANSKIIRWRAH-DGLVLSLSWSTQSN-IIASGGEDFRFKIWDA-QGANLFTSA-AEEYAITSVAFNP 237 (737)
T ss_pred ecC-CeEEEeecccccceeEEecc-CcEEEEeecCcccc-ceeecCCceeEEeecc-cCcccccCC-hhccceeeeeecc
Confidence 543 67888888877777777776 89999999999998 9999999999999995 456666655 7999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc-cccchhh
Q 004270 279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHV 357 (764)
Q Consensus 279 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~ 357 (764)
+ ..++.++. +++| ......+.|..++|++||..++.|...|.+.+=-+...+... .+.....
T Consensus 238 d-~~~~v~S~-nt~R---------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~ 300 (737)
T KOG1524|consen 238 E-KDYLLWSY-NTAR---------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSK 300 (737)
T ss_pred c-cceeeeee-eeee---------------ecCCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEee
Confidence 9 45555443 3343 223456789999999999999999988877654333222111 1100000
Q ss_pred hHHH---hhc-cchhhhhccCc--------------eeEeeecccccccccceeEee------------------eCCce
Q 004270 358 AKRA---RKL-KMKEEELKLKP--------------VIAFDCAEIRERDWCNVVTCH------------------MDTAQ 401 (764)
Q Consensus 358 ~~~~---~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 401 (764)
.++. +.. ....+.+.++. .+...+.-.....|+.-+... .+..+
T Consensus 301 ~r~~I~vrdV~~~v~d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsS 380 (737)
T KOG1524|consen 301 SRKSITVRDVATGVQDILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSS 380 (737)
T ss_pred ccceEEeehhhhhHHHHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcE
Confidence 0000 000 00001111111 111122222233444332222 22333
Q ss_pred EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEEC-cCCcccceecCccccccccccCcEE
Q 004270 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~-~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
+.++.+.....-...++.. .......-.+|-....|+.-. ....+++||. .+|+....-. ...|...|.
T Consensus 381 i~lytyegR~~~np~~Pg~--~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk------~L~hk~~Iv 452 (737)
T KOG1524|consen 381 IWLYTYEGRLHLNPRYPGS--QIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK------SLRHKQQIV 452 (737)
T ss_pred EEEEEecCceecCCCCCCc--ccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc------ccchhhhHH
Confidence 4444443322211111100 001111112222223444432 2346788888 5555443211 125677777
Q ss_pred EEEECC----CCCEEEEEeCCCeEEEEECCC-CCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 479 GVACDS----TNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 479 ~l~~~~----~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
.++.+. +.+.++--...+.+.|-..++ |+....++.+..+..++|+..- -+.+|-.|+.+.||-...
T Consensus 453 eIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndtt-NiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 453 EIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTT-NILCGLQDTCFSVWYYPN 524 (737)
T ss_pred HhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccc-ceeeeeccceEEEEEcCC
Confidence 777754 446677677777777766553 2334445566778888888644 456788899999997654
No 201
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.7e-18 Score=176.51 Aligned_cols=277 Identities=18% Similarity=0.303 Sum_probs=201.1
Q ss_pred CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC
Q 004270 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (764)
Q Consensus 223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 302 (764)
|...|+|+.|...|. ++++|+.|..++||..+++.++...+ ||.+.|+.++.+.+..++++++.|..|++|.+...
T Consensus 189 H~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-- 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-- 264 (1113)
T ss_pred hhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence 477899999999998 89999999999999999999999999 99999999999999999999999999999987765
Q ss_pred CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (764)
Q Consensus 303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (764)
.++..+.||.+.|++++|+|-. +.+.||++++||.+-...... .
T Consensus 265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~--p---------------------------- 308 (1113)
T KOG0644|consen 265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV--P---------------------------- 308 (1113)
T ss_pred --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC--C----------------------------
Confidence 5677888999999999999954 678899999999751100000 0
Q ss_pred ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
. ........-+.++.+...+..+++|+.++.-..|.+
T Consensus 309 --------------------------------r--p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~--------- 345 (1113)
T KOG0644|consen 309 --------------------------------R--PLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF--------- 345 (1113)
T ss_pred --------------------------------C--CCCcccccceeeeeccccccccccccCCcccccchh---------
Confidence 0 000000122333333334444444444433222211
Q ss_pred cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~ 542 (764)
..+++....-.+++.+.| -+.+.+++-.+..+.+|
T Consensus 346 ---------------~~l~~~~~~lif~t~ssd------------------------------~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 346 ---------------EQLAWRSNLLIFVTRSSD------------------------------LSSIVVTARNDHRLCVW 380 (1113)
T ss_pred ---------------hHhhhhccceEEEecccc------------------------------ccccceeeeeeeEeeee
Confidence 111222121112222111 01345555667788999
Q ss_pred EccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEe-eCCceEEEEEcCCCCeEEEEEeCC
Q 004270 543 DVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 543 d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
++.+|.++..+.+|...+..+.++|-+ +...+++.||...|||+-.|.+++.+. +|..+....||+||..++....-+
T Consensus 381 nl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred ecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC
Confidence 999999999999999999999999955 455589999999999999998887654 566689999999999998776666
Q ss_pred CeEEEEec
Q 004270 621 NGVYLWVN 628 (764)
Q Consensus 621 ~~i~lW~~ 628 (764)
.++|...
T Consensus 461 -ql~i~g~ 467 (1113)
T KOG0644|consen 461 -QLYILGT 467 (1113)
T ss_pred -ceEEecc
Confidence 4887754
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=4.9e-15 Score=138.17 Aligned_cols=269 Identities=14% Similarity=0.240 Sum_probs=194.9
Q ss_pred CeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCce--EEEecccccceEEEE
Q 004270 26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ--VATWSRHSAKVNLLL 100 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~--~~~~~~h~~~v~~l~ 100 (764)
+..+++.+.-.-.++|+.......+-.......|--+-|+...+-++.-.+ +++.+..+. +..+. -..+|.++.
T Consensus 16 d~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~Vr 94 (391)
T KOG2110|consen 16 DSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVR 94 (391)
T ss_pred ceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEE
Confidence 334444444455678888775553333334556777778888776666433 777765443 33322 235788999
Q ss_pred EeCCEEEEEecCCcEEEEEccCCcccccceeeEecC-CccccEEEEeCCCCCCEEEE--EeCCCcEEEEeCCCCeEEEEE
Q 004270 101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIV--GSQEGSLQLWNISTKKKLYEF 177 (764)
Q Consensus 101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~ 177 (764)
.+-++|+++-++. |.|+|+.+.++ +.++... ......++++|+....+++. ....|.|.+||..+.+.+..+
T Consensus 95 mNr~RLvV~Lee~-IyIydI~~Mkl----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 95 MNRKRLVVCLEES-IYIYDIKDMKL----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred EccceEEEEEccc-EEEEeccccee----ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 9999999998655 99999999988 6666554 44555778888775456665 334689999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEcCCe-EEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270 178 KGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~ 255 (764)
..|.+++-|++|+++|.+||+++..|+ |||+.+.+|+.+.+|+.+. ...|.+++|+|+++ +|++.+..++|.+|.++
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLE 248 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEec
Confidence 999999999999999999999999987 6899999999999998653 24689999999999 88888899999999886
Q ss_pred Cceee-------------------------------------eeeecccccCe-eEEEEe--cCCCEEEEEcCCCcEEEE
Q 004270 256 KRRLQ-------------------------------------SVIREAHDNAI-ISLHFF--ANEPVLMSASADNSIKMW 295 (764)
Q Consensus 256 ~~~~~-------------------------------------~~~~~~h~~~v-~~l~~~--~~~~~l~s~~~d~~i~vw 295 (764)
..... ...+ ...+.. ..+.+. +..+.+..++.||.+..|
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~-l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y 327 (391)
T KOG2110|consen 249 KVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAK-LPESGRKNICSLSSIQKIPRVLVASYDGHLYSY 327 (391)
T ss_pred ccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEE-ccCCCccceEEeeccCCCCEEEEEEcCCeEEEE
Confidence 43100 0000 001111 222333 467789999999999999
Q ss_pred EecCCCC
Q 004270 296 IFDTTDG 302 (764)
Q Consensus 296 ~~~~~~~ 302 (764)
.++..++
T Consensus 328 ~l~~~~g 334 (391)
T KOG2110|consen 328 RLPPKEG 334 (391)
T ss_pred EcCCCCC
Confidence 9887643
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.3e-16 Score=167.13 Aligned_cols=292 Identities=16% Similarity=0.231 Sum_probs=207.4
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC---CCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCC
Q 004270 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYD 213 (764)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~ 213 (764)
....+.|||-. ..++++...-.|++||.+.++.+..|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~--p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFE--PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCC--ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 44566788877 67888887778999999999998888654 46788888765 3468999999999999974322
Q ss_pred -----ceEEEEec------cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCC
Q 004270 214 -----EELVTFTH------SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEP 281 (764)
Q Consensus 214 -----~~~~~~~~------~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~ 281 (764)
+.+..+.. ...+.-.-+.|..... +|++++.-..|+|||.........+..+....|+++.-.. .|+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 22222211 0011113456666655 4444555789999999999888888867777888886543 468
Q ss_pred EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC--CeeEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhh
Q 004270 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358 (764)
Q Consensus 282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (764)
.++.|..||+|++||.+..... ..+...+.|... |..+.+-+.|- .|++|+.||.|++||++.......+..
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---- 1297 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---- 1297 (1387)
T ss_pred eEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee----
Confidence 9999999999999998876543 345555678877 99999988554 599999999999999875311100000
Q ss_pred HHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCE
Q 004270 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438 (764)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 438 (764)
T Consensus 1298 -------------------------------------------------------------------------------- 1297 (1387)
T KOG1517|consen 1298 -------------------------------------------------------------------------------- 1297 (1387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec----
Q 004270 439 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---- 514 (764)
Q Consensus 439 l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---- 514 (764)
+.- ....+..+++.+++....+++|+. +.|+||++...++......
T Consensus 1298 ---------v~~--------------------~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1298 ---------VAH--------------------WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred ---------eec--------------------cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccc
Confidence 000 011224788888888888888888 8899998765433221111
Q ss_pred ---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270 515 ---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (764)
Q Consensus 515 ---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~ 548 (764)
...+.|++|+|..-++|+|+.|..|.||.....+
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 1667999999999999999999999999876543
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.3e-16 Score=148.01 Aligned_cols=193 Identities=21% Similarity=0.266 Sum_probs=155.4
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 428 ~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 507 (764)
..++++.+|..+++|..||.+++|+..+........ .|.+.|.++.|+|||+.|++.+.| ..+||+..++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 789999999999999999999999988777766664 899999999999999999999999 99999999997
Q ss_pred eeeeEec---CcceEEEEEeecC-----CEEEEEeCCCeEEEEEccCCeE-----EEEeecCCCCeeEEEEcCCCcEEEE
Q 004270 508 LKSRWEV---GCSLVKIVYHRVN-----GLLATVADDLVIRLFDVVALRM-----VRKFEGHTDRITDFCFSEDGKWLLS 574 (764)
Q Consensus 508 ~~~~~~~---~~~i~~~~~s~~~-----~~la~~~~d~~i~v~d~~~~~~-----~~~~~~h~~~i~~l~~s~dg~~l~s 574 (764)
.+..... +.....+.|+.|+ .+++.....+.|+.||+...+- .++...-...|++++.|+||++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 7666553 2567788888887 3334444567788877654322 1111122346999999999999999
Q ss_pred EeCCCcEEEEEcCccceEEEEee-CC-ceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 575 SGMDGSLRIWDVILARQIDAIHV-DV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 575 ~s~dg~i~iwd~~~~~~~~~~~~-~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
|+.||.|.|++..+-+.+..++. |. -|+.+.|+||.+++++.+.+. ...+-.+..
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-EAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-ceeEEEEee
Confidence 99999999999998888877653 44 399999999999999988887 477766543
No 205
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.4e-15 Score=151.66 Aligned_cols=432 Identities=14% Similarity=0.145 Sum_probs=269.6
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCC------------eEEEEECCe---EEEEecCc--eEE
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD------------YTFAAYGNH---IAVVKRAH--QVA 87 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~------------~~~~a~g~~---i~vw~~~~--~~~ 87 (764)
+..-|+.++.+..|.+-|..+.+++....-|+..|+.+.+.|- ...+|+++. |.+||... .+.
T Consensus 24 ~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 24 SPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred CccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 3456777777899999999999999999889999999998753 345666543 99999643 344
Q ss_pred EecccccceEEEEE-----eC-CEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC
Q 004270 88 TWSRHSAKVNLLLL-----FG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (764)
Q Consensus 88 ~~~~h~~~v~~l~~-----~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (764)
.+..|..+|..+.+ +. ..|+.......+.+|+..+|+. +-.............+.|-.. +.+.+-+..|
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g 178 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKG 178 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCc-ceEEEEccCc
Confidence 48899999999986 23 6788888899999999999988 333333333333334555443 3444445556
Q ss_pred cEEEEeCC-------CCeEEEEEcCCCC------------Ce-------------EEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 162 SLQLWNIS-------TKKKLYEFKGWGS------------SI-------------SSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 162 ~i~iwd~~-------~~~~~~~~~~h~~------------~i-------------~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
.+.+-+.- .|+..+.-..|.+ .+ -.++|+|.-+-+........+.++|
T Consensus 179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d 258 (1062)
T KOG1912|consen 179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD 258 (1062)
T ss_pred eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence 66665432 2344444444322 00 1246788766556566678899999
Q ss_pred ccCCceEEEEeccCCCCEEEEEEeeCCC-CEEEEEeCCCcEEEEECCCc----------------eeeeeeecccccCee
Q 004270 210 VRYDEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR----------------RLQSVIREAHDNAII 272 (764)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~-~~l~sg~~dg~i~iwd~~~~----------------~~~~~~~~~h~~~v~ 272 (764)
++-...+...... .+.+.-+.+.|+++ ..|++.-.||.+.+|-.+.. +....+..-.+-.+.
T Consensus 259 le~~~~l~vvpie-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~ 337 (1062)
T KOG1912|consen 259 LEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV 337 (1062)
T ss_pred chhhceeEEEEec-cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc
Confidence 9998888888766 56677788888764 37888889999999976542 111111111112222
Q ss_pred EEEEecC-CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC-----CCEEEEEeCCCcEEEEEeecc
Q 004270 273 SLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 273 ~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-----~~~l~s~~~dg~i~i~d~~~~ 346 (764)
.....|. ...++..-.+|.+.+|.+..+... .....+...-+..+.|+.+ ...|..-+.||. ...+
T Consensus 338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~---~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~-----h~sG 409 (1062)
T KOG1912|consen 338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIH---LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGS-----HSSG 409 (1062)
T ss_pred eeecCCCChhhhhhhhhcchhHHHhhhcCCcC---cccccccccccccccccCceeehhhccccchhhcCC-----CCCC
Confidence 3333444 233333445677888977653210 1111111122222222211 112333333430 0000
Q ss_pred cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCC
Q 004270 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 426 (764)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 426 (764)
....+. .|. ..
T Consensus 410 s~~~~~---------------------~p~------------------------------------------------p~ 420 (1062)
T KOG1912|consen 410 STCVRM---------------------RPM------------------------------------------------PE 420 (1062)
T ss_pred ceeeec---------------------ccC------------------------------------------------cc
Confidence 000000 000 00
Q ss_pred eEEEEEccCC-------CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE-------
Q 004270 427 VKACTISACG-------NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA------- 492 (764)
Q Consensus 427 v~~~~~s~~g-------~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~------- 492 (764)
.+-..-.|.| ..+++|++.|+|.++|+.++.....+. .|...|.++.|-...+++-.+
T Consensus 421 ~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs--------vht~~VkgleW~g~sslvSfsys~~n~~ 492 (1062)
T KOG1912|consen 421 LTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS--------VHTSLVKGLEWLGNSSLVSFSYSHVNSA 492 (1062)
T ss_pred cceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--------ccccceeeeeeccceeEEEeeecccccc
Confidence 0001111111 368999999999999999999988886 899999999998766543222
Q ss_pred --eCCCeEEEEECCCCCeeeeE--e--cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270 493 --GYHGDIKVWDFKGRDLKSRW--E--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 493 --~~dg~v~iwd~~~~~~~~~~--~--~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~ 547 (764)
+.-+.+.+-|+++|..+..- + ...+|..+..|..++||+....+.-+.+||+++.
T Consensus 493 sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 493 SGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred ccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 22245778899988544332 2 2389999999999999999999999999998654
No 206
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=2.5e-16 Score=147.44 Aligned_cols=160 Identities=15% Similarity=0.233 Sum_probs=134.4
Q ss_pred ccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270 471 YAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (764)
Q Consensus 471 ~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~ 549 (764)
.+|...|.-++|+|.. +.|++++.|.+|.+|++.+++.+.++.+...|.++.|+.||.++++.+.|..|||||.+++++
T Consensus 128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV 207 (472)
T ss_pred eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE
Confidence 3899999999999954 688999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEeecCCCC-eeEEEEcCCCcEEEEEe---CCCcEEEEEcCccc---eEEEEeeCCceEEEEEcCCCCeEEEEEeCCCe
Q 004270 550 VRKFEGHTDR-ITDFCFSEDGKWLLSSG---MDGSLRIWDVILAR---QIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622 (764)
Q Consensus 550 ~~~~~~h~~~-i~~l~~s~dg~~l~s~s---~dg~i~iwd~~~~~---~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~ 622 (764)
+.+-.+|.+. -..+.|-.+|..+-||- .+..+-+||-.+-+ ....+...+.|.---|.+|...+..++.....
T Consensus 208 v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 208 VSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred eeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence 9998888753 34566888888444432 57889999876532 34555666778888899999999988876667
Q ss_pred EEEEeccc
Q 004270 623 VYLWVNRC 630 (764)
Q Consensus 623 i~lW~~~~ 630 (764)
|+-|.+..
T Consensus 288 IRYyEit~ 295 (472)
T KOG0303|consen 288 IRYFEITN 295 (472)
T ss_pred eEEEEecC
Confidence 99988743
No 207
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=5e-16 Score=161.11 Aligned_cols=274 Identities=18% Similarity=0.202 Sum_probs=197.0
Q ss_pred CeEEEEEccCC-ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee-----eeeeecccccCeeEEEE
Q 004270 203 GKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----QSVIREAHDNAIISLHF 276 (764)
Q Consensus 203 g~i~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~-----~~~~~~~h~~~v~~l~~ 276 (764)
+.+.+|+++.. ..-..+.. ...|+++.|+|...++++.|..+|.|.+||++.+.. +......|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999876 33333333 688999999999888999999999999999988754 23333578999999999
Q ss_pred ecCCCE--EEEEcCCCcEEEEEecCCCCCce--eeEec------cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeec
Q 004270 277 FANEPV--LMSASADNSIKMWIFDTTDGDPR--LLRFR------SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 277 ~~~~~~--l~s~~~d~~i~vw~~~~~~~~~~--~~~~~------~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~ 345 (764)
..+..- +++++.||.|..|+++.-..... +.... ..-...+++++|.+ +-..++.|+.+|.|..-+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 876554 99999999999998775432111 11111 12235788999998 677899999999776532211
Q ss_pred ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (764)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (764)
.+...+.. .........|.+
T Consensus 380 ~~~~~~~~------------------------------------------------------------~~~~~~~~~h~g 399 (555)
T KOG1587|consen 380 YTPAPEVS------------------------------------------------------------YKGHSTFITHIG 399 (555)
T ss_pred Cccccccc------------------------------------------------------------ccccccccccCc
Confidence 11000000 011112234568
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECc-CCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEEC
Q 004270 426 AVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF 503 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~ 503 (764)
.+.++.++|-+..++..+.|.++++|... ...++..+. .+...|++++|||.. ..++++..||.+.+||+
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 99999999998777766669999999988 555555553 677779999999976 46677778999999998
Q ss_pred CCCC--eeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 504 KGRD--LKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 504 ~~~~--~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
.... +....... ...+.+.++++|+.|++|...|.+++|++..
T Consensus 472 l~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 472 LQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 7543 33333333 5567778888899999999999999999863
No 208
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=159.29 Aligned_cols=320 Identities=14% Similarity=0.168 Sum_probs=236.9
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC-CCEEEEEeCCCcEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVIS 250 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~-~~~l~sg~~dg~i~ 250 (764)
.+...+..|.+.|..+.|...|..|++|+.|..|.+||...++....+..+|...|....|.|.. ..-+++++.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 34466889999999999999999999999999999999999999999999989999988898853 23688999999999
Q ss_pred EEECCCc-eee-eeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC---CCeeEEEec
Q 004270 251 IWNLEKR-RLQ-SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYA 324 (764)
Q Consensus 251 iwd~~~~-~~~-~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~ 324 (764)
+=.+... ... ......|.++|..++.-|+.+ -|.+++.|+.+.-.|+.......... ....+.. ....++..|
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCC
Confidence 8876433 222 122237999999999999775 68899999999988887664433333 3334444 567888888
Q ss_pred -CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 325 -NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 325 -~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
+...+++++.|..+++||.+.-.....-. ++..+
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---------------------~~~~f------------------------ 326 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNG---------------------VLDKF------------------------ 326 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccc---------------------hhhhc------------------------
Confidence 45589999999999999976432210000 00000
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc--eec---CccccccccccC--c
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--SYL---DMSERSNYAHNG--E 476 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~--~~~---~~~~~~~~~h~~--~ 476 (764)
...+... .....|++++++.++.-+++.+.|-.|++|+-.-+.-.. ... .......++|.. .
T Consensus 327 --------~p~hl~~---d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T 395 (559)
T KOG1334|consen 327 --------CPHHLVE---DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT 395 (559)
T ss_pred --------CCccccc---cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc
Confidence 0011111 334789999999999999999999999999543332210 000 001112347754 4
Q ss_pred EEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270 477 VVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (764)
Q Consensus 477 v~~l~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~ 548 (764)
|.++-| -|...++++|+.-|.|.||+-++++.+..++.. .-|.|+.-+|--..||+.+-|..|+||.-.+.+
T Consensus 396 VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 396 VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 677765 567899999999999999999999999888766 578999999999999999999999999765443
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.1e-16 Score=146.42 Aligned_cols=308 Identities=14% Similarity=0.128 Sum_probs=219.1
Q ss_pred eEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC------CCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270 132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS------TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGK 204 (764)
Q Consensus 132 ~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~-~h~~~i~~~~~sp~~~~la~g~~dg~ 204 (764)
.+..|.+.+..+.|+.++ +.|++|+.|..+++|++. +.+++.... .|.+.|.|++|.....+|.+|..+++
T Consensus 51 D~~~H~GCiNAlqFS~N~--~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHND--RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCC--eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 344577788888899988 899999999999999985 346666554 45689999999999999999999999
Q ss_pred EEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeee-cccccCeeEEEEecCCC
Q 004270 205 IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIR-EAHDNAIISLHFFANEP 281 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~-~~h~~~v~~l~~~~~~~ 281 (764)
|.+.|+++.+.+..+.... .+.|+.+..+|... .|++.+.++.|.+||.+... ....+. .........+.|+|..+
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999988887542 46899999999876 89999999999999998764 222221 12345678899999776
Q ss_pred -EEEEEcCCCcEEEEEecCCCCCceee---EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270 282 -VLMSASADNSIKMWIFDTTDGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (764)
Q Consensus 282 -~l~s~~~d~~i~vw~~~~~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (764)
+|++++..+-+.+||........... ..+......-.++.|+|+|+.|++.-....-.+||+...++....
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k----- 282 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK----- 282 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe-----
Confidence 67778888889999987653211100 111111223367889999999988766666667777553321110
Q ss_pred hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (764)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (764)
++..+ ++ -.....+.+++|-.+-.
T Consensus 283 ---------------------~D~N~-------------------------~G----------Y~N~~T~KS~~F~~D~~ 306 (609)
T KOG4227|consen 283 ---------------------SDHNP-------------------------NG----------YCNIKTIKSMTFIDDYT 306 (609)
T ss_pred ---------------------ccCCC-------------------------Cc----------ceeeeeeeeeeeeccee
Confidence 00000 00 00114566777765544
Q ss_pred EEEEEecCCcEEEEECcCCcccce---------------ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 438 FAVLGTAGGWIERFNLQSGISRGS---------------YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 438 ~l~~g~~~g~i~i~~~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
+++|+.+-.|++|.+.......- +.......+++|..-+..+.|+|...+|++.+-...+++|.
T Consensus 307 -v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 307 -VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred -eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 88898888999998854322222 11122224579999999999999999999999999999997
Q ss_pred CC
Q 004270 503 FK 504 (764)
Q Consensus 503 ~~ 504 (764)
-.
T Consensus 386 ~~ 387 (609)
T KOG4227|consen 386 DH 387 (609)
T ss_pred cc
Confidence 44
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.2e-15 Score=139.23 Aligned_cols=166 Identities=11% Similarity=0.148 Sum_probs=138.4
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc---eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
+.+.....+|+|.+|++|+..+|++..+..|.||...... ...++..| ...|+.+.|.|.++ .|++++.|..-++
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~sn-rIvtcs~drnayV 81 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSN-RIVTCSHDRNAYV 81 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCC-ceeEccCCCCccc
Confidence 3444456899999999999999999999999999987554 45566555 88999999999998 7999999999999
Q ss_pred EEC-CCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 252 WNL-EKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 252 wd~-~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
|.. ..+ ++.-.+. -+....+++.|+|.++.+++|+.-+.|.||-++..+.-+........+...|+++.|+|++-+
T Consensus 82 w~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred cccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 998 444 3333444 588999999999999999999999999999988765543333444567888999999999999
Q ss_pred EEEEeCCCcEEEEEe
Q 004270 329 ILSAGQDRAFRLFSV 343 (764)
Q Consensus 329 l~s~~~dg~i~i~d~ 343 (764)
++.|+.|+..|+|+.
T Consensus 161 laaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSA 175 (361)
T ss_pred ecccccCcceeEEEE
Confidence 999999999999985
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=4.3e-16 Score=166.02 Aligned_cols=266 Identities=17% Similarity=0.198 Sum_probs=184.6
Q ss_pred Ee-cCceEEEecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccc---cceeeEecCCccccEEEEeCCCCCC
Q 004270 80 VK-RAHQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENL---APVGHVKLDDKFTPTCIMHPDTYLN 152 (764)
Q Consensus 80 w~-~~~~~~~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~ 152 (764)
|+ +|..++++..|+..|..++. ++.+++|||.||+|++||...-.... ....++......+..+.+-+.+ +
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--D 1111 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--C
Confidence 65 46778889999999998886 46899999999999999987644321 1122233234444555566666 7
Q ss_pred EEEEEeCCCcEEEEeCCCC--e-----EEEEEcCC-CCCeEE-EEEcCC-C-CEEEEEEcCCeEEEEEccCCceEEEEec
Q 004270 153 KVIVGSQEGSLQLWNISTK--K-----KLYEFKGW-GSSISS-CVSSPA-L-DVVAVGCSDGKIHVHNVRYDEELVTFTH 221 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~--~-----~~~~~~~h-~~~i~~-~~~sp~-~-~~la~g~~dg~i~iwd~~~~~~~~~~~~ 221 (764)
.+|+++.||.|++.+++.. + +......+ .+.+.. -+|... + ..|+.+...+.|..||.+......+++.
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 8999999999999988752 1 11112222 233333 344332 2 3788888899999999998776665553
Q ss_pred c-CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC---CEEEEEc--CCCcEEEE
Q 004270 222 S-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSAS--ADNSIKMW 295 (764)
Q Consensus 222 ~-~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~--~d~~i~vw 295 (764)
. ..|.|++++.+|.+. .+++|+..|.+.+||++-+.++.....++..++..+..+|-. ...++++ ..+.|.+|
T Consensus 1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred CccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 2 247899999999999 999999999999999999988888876777888888887743 3444444 47889999
Q ss_pred EecCCCCCceeeEe---------c------cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270 296 IFDTTDGDPRLLRF---------R------SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (764)
Q Consensus 296 ~~~~~~~~~~~~~~---------~------~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~ 348 (764)
++.++.....+... . +.+.-......+...+..+++|+.|..||.||......
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 98877432211111 0 01122223334444566889999999999999876543
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.3e-15 Score=139.55 Aligned_cols=288 Identities=20% Similarity=0.236 Sum_probs=194.0
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc---
Q 004270 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--- 257 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~--- 257 (764)
...+..++|++.-..+|++..|-.|++||-.+ .....++...+..|+|++|.|.+..-|++|+.. -|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34567889999877889999999999999765 666777766678999999999987788888864 5999976432
Q ss_pred -ee--------eeeee-cccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270 258 -RL--------QSVIR-EAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (764)
Q Consensus 258 -~~--------~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (764)
+. ...++ .+| .+|++++|.+||..+++++. |..|.+||.+++...+ +. ....+.+.-+.|+|||
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--L~--~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--LI--PKGLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--cc--ccCCCceeeEEEcCCC
Confidence 11 11122 133 68999999999999999986 6789999998875432 22 2345678889999999
Q ss_pred CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (764)
Q Consensus 327 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (764)
.+|+.+.-|+..++|...+.-..
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~--------------------------------------------------------- 273 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTK--------------------------------------------------------- 273 (445)
T ss_pred CEEEEecccceeeeehhccccee---------------------------------------------------------
Confidence 99999999999999964322110
Q ss_pred ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec------------Ccccccc----
Q 004270 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL------------DMSERSN---- 470 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~------------~~~~~~~---- 470 (764)
.. .. -..+.+...+|+|+|++|+..... .-.+|.+.....-..+. +......
T Consensus 274 -er-----w~-----lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~ 341 (445)
T KOG2139|consen 274 -ER-----WI-----LGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQ 341 (445)
T ss_pred -cc-----ee-----ccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCc
Confidence 00 00 112588999999999988776543 23344432211111111 0000000
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCC--------eEEEEECCCCCeeeeEec----CcceEEEEEee---cCCEEEEEeC
Q 004270 471 YAHNGEVVGVACDSTNTLMISAGYHG--------DIKVWDFKGRDLKSRWEV----GCSLVKIVYHR---VNGLLATVAD 535 (764)
Q Consensus 471 ~~h~~~v~~l~~~~~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~----~~~i~~~~~s~---~~~~la~~~~ 535 (764)
.--.+.+.+++|+|.|.+|++.-..+ .|.+||....-....... ......++|+| ++.+|.++-.
T Consensus 342 ~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs 421 (445)
T KOG2139|consen 342 RLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS 421 (445)
T ss_pred ccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEec
Confidence 11256788999999999999876543 366777665544433321 13345566666 5667777777
Q ss_pred CCeEEEEEc
Q 004270 536 DLVIRLFDV 544 (764)
Q Consensus 536 d~~i~v~d~ 544 (764)
.|.+.-|++
T Consensus 422 TGriq~ypl 430 (445)
T KOG2139|consen 422 TGRIQRYPL 430 (445)
T ss_pred cCceEeeee
Confidence 777776665
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=1.3e-15 Score=162.36 Aligned_cols=269 Identities=16% Similarity=0.240 Sum_probs=189.6
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCC---ceeeEeccCCCCCCeeEEEecCCC
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGR 327 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~ 327 (764)
|+. .|..+..+. .|...|..++.++.. .++++||.||+|++|+.....+. .+...+...-...+.++...+.+.
T Consensus 1034 W~p-~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 665 466677776 688889899888765 89999999999999998765443 222233333567889999999999
Q ss_pred EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (764)
Q Consensus 328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (764)
.++.++.||.|++.++..........
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~------------------------------------------------------ 1137 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVA------------------------------------------------------ 1137 (1431)
T ss_pred eEEEEcCCCeEEEEEcccccccccee------------------------------------------------------
Confidence 99999999999999986531111100
Q ss_pred cceeecceeecCCCCCCCCeE-EEEEcc-CC-CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270 408 QNFVLGEHILRPCPENPTAVK-ACTISA-CG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~-~~~~s~-~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 484 (764)
.....+.....+.+. .-++.. .+ ..++.++..+.|..||+.+......... ....+.|++++.+|
T Consensus 1138 ------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~------~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1138 ------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN------QLRHGLVTSIVIDP 1205 (1431)
T ss_pred ------eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc------CccccceeEEEecC
Confidence 000000001112222 222222 22 3788899999999999988766655542 24568899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecC---CEEE-EEe-CCCeEEEEEccCCeEEEEeecCC
Q 004270 485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVN---GLLA-TVA-DDLVIRLFDVVALRMVRKFEGHT 557 (764)
Q Consensus 485 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~---~~la-~~~-~d~~i~v~d~~~~~~~~~~~~h~ 557 (764)
.+.++++|...|.+.+||++-+.++..+.++ .++..+..+|-. ...+ +++ ..+.|.+|++.+|.+...+....
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~ 1285 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD 1285 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC
Confidence 9999999999999999999999998888766 788888887743 3444 444 57899999999997766665331
Q ss_pred C-------------------CeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 558 D-------------------RITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 558 ~-------------------~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
+ .....++..-+.++.+|+.|..||.||...
T Consensus 1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 1 111223333456889999999999999753
No 214
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.3e-15 Score=150.94 Aligned_cols=423 Identities=14% Similarity=0.121 Sum_probs=271.1
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCC------------CEEEEEEcCCeEEE
Q 004270 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL------------DVVAVGCSDGKIHV 207 (764)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~------------~~la~g~~dg~i~i 207 (764)
...+-++|.| .++.|+ ...|.+.|..+.+.++.+..|...|+.+.|.|.. -+||++...|.|.+
T Consensus 18 ~~A~Dw~~~G---LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSG---LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccc---eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3455588888 455554 4679999999999999999999999999998732 26778888899999
Q ss_pred EEccCCceEEEEeccCCCCEEEEEEee---CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCCEE
Q 004270 208 HNVRYDEELVTFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283 (764)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~v~~l~fs~---d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l 283 (764)
||...+..+..+.++ ..++..++|-+ +.+++|++-.....|.+|+..+|+....... ......++.+.| |.+.+
T Consensus 94 ~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeeeeCCCCcceE
Confidence 999999888888766 78899999876 4445777777788999999999998888773 334566678877 44455
Q ss_pred EEEcCCCcEEEEEecCC---CCCceeeEeccCCCC----------------CC---------eeEEEecCCCEEEEEeCC
Q 004270 284 MSASADNSIKMWIFDTT---DGDPRLLRFRSGHSA----------------PP---------LCIRFYANGRHILSAGQD 335 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~---~~~~~~~~~~~~h~~----------------~v---------~~i~~~~~~~~l~s~~~d 335 (764)
...+..|.+.+-++-.. ....+.......|.. .. ..++|+|.-+.++.....
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 55555666655543221 111222222222222 11 124567765556656667
Q ss_pred CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee---
Q 004270 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL--- 412 (764)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--- 412 (764)
+.+.++|++-............ ..++..+-. ......+.|...+|.+.+|..+....
T Consensus 252 rellv~dle~~~~l~vvpier~---------------~akfv~vlP-----~~~rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERG---------------GAKFVDVLP-----DPRRDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred cceEEEcchhhceeEEEEeccC---------------CcceeEecc-----CCCcceEEEEecCCeEEEEEeeccCcccc
Confidence 7799999876554443321100 001111111 11224566666778888886553211
Q ss_pred ----------c--ceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECcCCcccceecCccc------------
Q 004270 413 ----------G--EHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSE------------ 467 (764)
Q Consensus 413 ----------~--~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~------------ 467 (764)
+ .+.+++.. ...+......|. .+.+++-.++|.+.+|++.+|+..........
T Consensus 312 ~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~ 389 (1062)
T KOG1912|consen 312 KPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLST 389 (1062)
T ss_pred ccchhhccccccceEEEeech--hcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCce
Confidence 0 11111111 112222223333 45566667788888898886554322211000
Q ss_pred -----------cccccccCcEEEEEECC-----------CC-------CEEEEEeCCCeEEEEECCCCCeeeeEecC-cc
Q 004270 468 -----------RSNYAHNGEVVGVACDS-----------TN-------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS 517 (764)
Q Consensus 468 -----------~~~~~h~~~v~~l~~~~-----------~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~ 517 (764)
....+|....++....| .+ .+++.|...|+|.++|+.++..-..+..+ +.
T Consensus 390 ~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~ 469 (1062)
T KOG1912|consen 390 KLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSL 469 (1062)
T ss_pred eehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccc
Confidence 01235666665555443 12 26788999999999999999888877666 77
Q ss_pred eEEEEEeecCCEEEEEeC---------CCeEEEEEccCCeEE--EEeec-CCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 518 LVKIVYHRVNGLLATVAD---------DLVIRLFDVVALRMV--RKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 518 i~~~~~s~~~~~la~~~~---------d~~i~v~d~~~~~~~--~~~~~-h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
|.++.|-...+++-.+.. -+.+.|-|+++|... +.+++ .+.+|+.+..|..|+||+..-.|.-+.+||
T Consensus 470 VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 470 VKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD 549 (1062)
T ss_pred eeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence 888888876666654432 246778899988542 22232 457899999999999999999999999999
Q ss_pred cCccc
Q 004270 586 VILAR 590 (764)
Q Consensus 586 ~~~~~ 590 (764)
+++..
T Consensus 550 ~kt~~ 554 (1062)
T KOG1912|consen 550 LKTLR 554 (1062)
T ss_pred hccch
Confidence 96543
No 215
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.72 E-value=5.4e-14 Score=148.52 Aligned_cols=271 Identities=15% Similarity=0.200 Sum_probs=193.5
Q ss_pred cceEEEEEeCCeEEEEECCeEEEEecCce--E------EEecccccceEEEE-EeCCEEEEEecCCcEEEEEccCCcccc
Q 004270 57 KKIRALASYRDYTFAAYGNHIAVVKRAHQ--V------ATWSRHSAKVNLLL-LFGEHILSIDIDGNMFIWAFKGIEENL 127 (764)
Q Consensus 57 ~~I~~~~~~~~~~~~a~g~~i~vw~~~~~--~------~~~~~h~~~v~~l~-~~g~~l~s~~~dg~v~vWd~~~~~~~~ 127 (764)
++..+.++-.|..+++.|..|.+||.... + .-+..| .+.... ..+..++++..-+.+.+=+.+....
T Consensus 8 ~~l~~~~~~~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~-- 83 (967)
T KOG0974|consen 8 GPLNLPQLVSDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQII-- 83 (967)
T ss_pred ccccchhhccceeeecCCCceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhhhh--
Confidence 44555555557888888899999986332 1 114455 111111 2566777776655554433322211
Q ss_pred cceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC----eEEEEEcCCCCEEEEEEcCC
Q 004270 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS----ISSCVSSPALDVVAVGCSDG 203 (764)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~----i~~~~~sp~~~~la~g~~dg 203 (764)
.. -...+..+.+.... .++++++.++.+.+||...+.....+...... ..-+.++++.-++++|+.-+
T Consensus 84 ---~~---~s~wi~g~~l~~e~--k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 84 ---ER---FSDWIFGAKLFEEN--KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ---hh---ccccccccchhhhc--ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 11 11222223344444 67999999999999999888777766543221 12234567777999999999
Q ss_pred eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE
Q 004270 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (764)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 283 (764)
.|.+|+....+.-..+. +|.+.|.++.|+.||+ ++++.+.|.++++|++++.+.....--+|...|..+.|+|+ .+
T Consensus 156 ~iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceec-ccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 99999998444433344 4599999999999999 99999999999999999998877333489999999999998 89
Q ss_pred EEEcCCCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~ 348 (764)
++++.|.+.++|+.+.. .+....+|. ..+..++..++...+++++.|+.+++|++.....
T Consensus 232 ~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred EEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 99999999999966543 334556665 4688999998888999999999999999876544
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.5e-16 Score=151.14 Aligned_cols=202 Identities=22% Similarity=0.265 Sum_probs=154.1
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (764)
.+++|+.+|. .|++|+.||.+|+|+..+...+.... .|...|.++.|+||++.|++.+.| ..+||+.+......+
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~-- 222 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR-- 222 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh--
Confidence 7899999998 99999999999999988777776666 799999999999999999999999 899999887622111
Q ss_pred EeccCCCCCCeeEEEecCC---C--EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270 308 RFRSGHSAPPLCIRFYANG---R--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~---~--~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (764)
.....-......++|+.|+ . .++....-+.++.|++........+.
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~----------------------------- 273 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR----------------------------- 273 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-----------------------------
Confidence 1112334456677888766 2 22333345567777654322110000
Q ss_pred ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
..........++++++|+||+++++|+.+|.|.+++..+.+.....
T Consensus 274 ----------------------------------~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 274 ----------------------------------LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV 319 (398)
T ss_pred ----------------------------------hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence 0001112368999999999999999999999999999998888777
Q ss_pred cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
. ..|...|+.+.|+|+.+++++.+.|....+..+.
T Consensus 320 k-------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 320 K-------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred h-------hhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 6 5999999999999999999999998888877655
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7.5e-16 Score=162.10 Aligned_cols=236 Identities=16% Similarity=0.180 Sum_probs=164.5
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC
Q 004270 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (764)
+..|.+||..... .+.+..|...+...+|||||+.|+.++.+ ..|.+||+.+++....... .+...+++|+|||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCC
Confidence 4689999985444 56677788899999999999999987654 4699999988764322211 2345578999999
Q ss_pred CCEEEEEeCCCcEEE--EECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCC
Q 004270 237 QPLLASGASSGVISI--WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH 313 (764)
Q Consensus 237 ~~~l~sg~~dg~i~i--wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (764)
+.++++.+.+|.+.| ||+.+++.. .+. .+...+....|+|||+.|+.++ .++...+|+++...+..+.+ .+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~ 333 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPS-QLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GG 333 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeE-eec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cC
Confidence 944444456776555 566666543 344 4667788999999999776555 57889999987654433322 23
Q ss_pred CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270 314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (764)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (764)
.. ....|+|||++|+..+.++ +.+||+.++..... ..
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~--------------------------------------- 370 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SS--------------------------------------- 370 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cC---------------------------------------
Confidence 33 4578999999999888765 55688765432110 00
Q ss_pred EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc--CCcccceecCccccccc
Q 004270 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ--SGISRGSYLDMSERSNY 471 (764)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~ 471 (764)
. .....+.|+|+|++++.++.+|...+|.+. +|.....+.
T Consensus 371 ----------------------------~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-------- 412 (429)
T PRK01742 371 ----------------------------T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-------- 412 (429)
T ss_pred ----------------------------C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--------
Confidence 0 112346799999999999999988887753 455555553
Q ss_pred cccCcEEEEEECCC
Q 004270 472 AHNGEVVGVACDST 485 (764)
Q Consensus 472 ~h~~~v~~l~~~~~ 485 (764)
.|.+.+...+|+|-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 67788888999885
No 218
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.71 E-value=5e-13 Score=141.34 Aligned_cols=189 Identities=16% Similarity=0.202 Sum_probs=153.0
Q ss_pred EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCc----cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004270 101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK----FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176 (764)
Q Consensus 101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 176 (764)
+....++.++.++.+-+||...+.. +..+..... ....+.++++. -++++|+.-+.|.+|+...-+.-..
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~----~~~i~~~er~~l~~~~~~g~s~~~--~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSV----LSKIQSDERCTLYSSLIIGDSAEE--LYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCce----ehhcCCCceEEEEeEEEEeccCcE--EEEEeccccccEEEEeccccCCcce
Confidence 4678889999899999999988766 333322222 22333466666 6899999999999999874444446
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
+.+|.+.|..+.++-||.++++.+.|.++++|++++.+.......+|...|..+.|.|+ .+++++.|-+.++|+.+
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~- 246 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN- 246 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc-
Confidence 89999999999999999999999999999999999999887555566899999999998 69999999999999764
Q ss_pred ceeeeeeeccc-ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 257 RRLQSVIREAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 257 ~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
++.+..+. .| ...+..++..++...++|++.|+.+++|++...
T Consensus 247 ~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 247 GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 44444666 55 457999999999999999999999999987544
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=4.2e-14 Score=129.40 Aligned_cols=227 Identities=16% Similarity=0.286 Sum_probs=164.4
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCC--cceEEEEEeCCeEEEEECCe--------EEEEecC--ceEEEecc
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP--KKIRALASYRDYTFAAYGNH--------IAVVKRA--HQVATWSR 91 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~I~~~~~~~~~~~~a~g~~--------i~vw~~~--~~~~~~~~ 91 (764)
.|..-+++ ..+.-++||+++=.+.......+. -.+.-|-|--+...+..|+. +.|||.- +++.++.
T Consensus 15 QD~ScFav-a~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~- 92 (346)
T KOG2111|consen 15 QDHSCFAV-ATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS- 92 (346)
T ss_pred cCCceEEE-EecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-
Confidence 34444444 457889999998643322221112 33444444444444444433 9999953 3344433
Q ss_pred cccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEE-EeCCCcEEEEeCCC
Q 004270 92 HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV-GSQEGSLQLWNIST 170 (764)
Q Consensus 92 h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-~~~dg~i~iwd~~~ 170 (764)
-..+|.++....++|+..- .+.|.||...+.-.. +..++......-.|++.|......|+. |-.-|.|+|-|+..
T Consensus 93 f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence 5678999999999999987 788999999854332 444444443334677777664334443 56679999999976
Q ss_pred CeE--EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCe-EEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEEEEEeCC
Q 004270 171 KKK--LYEFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASS 246 (764)
Q Consensus 171 ~~~--~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~sg~~d 246 (764)
.+. ...+..|.+.|.|++.+-+|.+||+++..|+ |||||..+|+.+..+..+. ...|.+++|||++. +||+++..
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdK 247 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDK 247 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCC
Confidence 655 4778999999999999999999999999987 7999999999999998653 35899999999999 99999999
Q ss_pred CcEEEEECCCc
Q 004270 247 GVISIWNLEKR 257 (764)
Q Consensus 247 g~i~iwd~~~~ 257 (764)
|+|.|+.++..
T Consensus 248 gTlHiF~l~~~ 258 (346)
T KOG2111|consen 248 GTLHIFSLRDT 258 (346)
T ss_pred CeEEEEEeecC
Confidence 99999998754
No 220
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=8.3e-15 Score=131.88 Aligned_cols=279 Identities=11% Similarity=0.128 Sum_probs=197.8
Q ss_pred eeeecCCCcceEEec----CCeEEEEEEe----CCeEEEEecC--CCeEEEec-CCCCcceEEEEEeCCe------EEEE
Q 004270 10 IGYITSSVPFSVQRL----GTENFVTVSV----GKAFHIYNCA--KLNLVLVG-PQLPKKIRALASYRDY------TFAA 72 (764)
Q Consensus 10 ~g~~~~~v~~~~~~~----~~~~~~~~~~----~~~i~iwd~~--~~~~~~~~-~~~~~~I~~~~~~~~~------~~~a 72 (764)
.+|.+.-.+|++... .+.+++.+|. .+.|+|--++ +++++... ..|+-+++.+.|.|+. .++.
T Consensus 39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT 118 (364)
T KOG0290|consen 39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT 118 (364)
T ss_pred EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence 344333344444432 4678888886 4667666544 45555433 4689999999999984 3445
Q ss_pred ECCeEEEEecCce---EE--------EecccccceEEEEE---eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCc
Q 004270 73 YGNHIAVVKRAHQ---VA--------TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK 138 (764)
Q Consensus 73 ~g~~i~vw~~~~~---~~--------~~~~h~~~v~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~ 138 (764)
+++.+++|+.+.+ +. +-..+.++++++.+ +-+++.+.|-|-+..|||++++.... ....+-.|.+
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkTQLIAHDK 197 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKTQLIAHDK 197 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-eeeEEEecCc
Confidence 5777999987632 11 12346778999987 57899999999999999999873211 1344556889
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE---EEEEcCCCCCeEEEEEcCC-CCEEEEEEcC-CeEEEEEccCC
Q 004270 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK---LYEFKGWGSSISSCVSSPA-LDVVAVGCSD-GKIHVHNVRYD 213 (764)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~h~~~i~~~~~sp~-~~~la~g~~d-g~i~iwd~~~~ 213 (764)
.+..++|...+. +.+++.+.||+++++|++..+. +++-.....+...++|++. -+++|+-..| ..|.|.|++..
T Consensus 198 EV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P 276 (364)
T KOG0290|consen 198 EVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP 276 (364)
T ss_pred ceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence 999999998664 7899999999999999987654 3333333567788888875 4677765554 67999999976
Q ss_pred c-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee------eeeeecccccCeeEEEEecCC-CEEEE
Q 004270 214 E-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------QSVIREAHDNAIISLHFFANE-PVLMS 285 (764)
Q Consensus 214 ~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~h~~~v~~l~~~~~~-~~l~s 285 (764)
. .+..+.. |++.|..++|.|.....+++++.|..+.+||+.+.-. +... ...+.|+.+.|++.. ..++.
T Consensus 277 ~tpva~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 277 CTPVARLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred Ccceehhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEE
Confidence 5 4555555 4899999999999988999999999999999975422 1112 356789999999754 46666
Q ss_pred EcCCCcEEE
Q 004270 286 ASADNSIKM 294 (764)
Q Consensus 286 ~~~d~~i~v 294 (764)
+. ++.+.+
T Consensus 354 ~~-~kklei 361 (364)
T KOG0290|consen 354 CF-GKKLEI 361 (364)
T ss_pred Ee-cCeeeE
Confidence 54 344433
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.7e-15 Score=157.88 Aligned_cols=236 Identities=8% Similarity=0.093 Sum_probs=164.4
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC---CcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (764)
+..|.+||..... ...+. .|...+.+..|+|||+.|+.++.+ ..|.+|++... ..+.+....+|. ..++|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg--~~~~l~~~~g~~---~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG--ARKVVASFRGHN---GAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC--ceEEEecCCCcc---CceeE
Confidence 4689999986655 34444 577889999999999999887654 36899987654 223444444443 46899
Q ss_pred ecCCCEEEEEe-CCCcEEEEEeeccc-ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 323 YANGRHILSAG-QDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 323 ~~~~~~l~s~~-~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
+|||+.|+.++ .+|...+|.+.... ....+
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------------------------ 287 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQL------------------------------------------------ 287 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeEee------------------------------------------------
Confidence 99999888765 67877766543211 00000
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 479 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 479 (764)
..+...+....|+|||+.++..+ .+|...+|++.......... .+.. ..
T Consensus 288 --------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~--~~ 337 (429)
T PRK01742 288 --------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG--YS 337 (429)
T ss_pred --------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC--CC
Confidence 01224567789999999877655 56788888765432211111 2222 35
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc--cCCeEEEEeecCC
Q 004270 480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV--VALRMVRKFEGHT 557 (764)
Q Consensus 480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~--~~~~~~~~~~~h~ 557 (764)
..|+|+|++++..+.++ +.+||+.+++....... .......|+|||++|++++.++.+.+|++ .+++..+.+.+|.
T Consensus 338 ~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 338 AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence 78999999998888765 55599988875433222 23456789999999999999998888876 3578888999999
Q ss_pred CCeeEEEEcCC
Q 004270 558 DRITDFCFSED 568 (764)
Q Consensus 558 ~~i~~l~~s~d 568 (764)
+.+...+|||-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 99999999984
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.1e-13 Score=136.40 Aligned_cols=355 Identities=15% Similarity=0.197 Sum_probs=226.9
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcCC---CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270 154 VIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (764)
Q Consensus 154 l~~~~~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 230 (764)
+++=+..+ +.+|+....+.......+ ..+....++|++|+++|.+. +..+.|++..++..+.+... . .++++
T Consensus 5 ~aVRsSe~-~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~-~~~~L 79 (566)
T KOG2315|consen 5 YAVRSSEG-FYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--K-KTYDL 79 (566)
T ss_pred EEEEccce-eEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--c-eeeee
Confidence 34444444 888987554433333222 44577889999999888765 47899999998875554443 3 79999
Q ss_pred EEeeCCCCEEEEEe----------CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 231 AFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 231 ~fs~d~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
.|+|-|. +|.+-- ..-.+.+|+++++.....+....... ++..|+.|..+.+-. ..+.+.+|+....
T Consensus 80 ~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f 156 (566)
T KOG2315|consen 80 LFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSF 156 (566)
T ss_pred eeccccc-ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEecCCc
Confidence 9999998 665421 12457899999977666666333333 789999988643322 3467999987663
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCC--CEEEE-----EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
.. ... .-|...++.+.++|.+ ..+++ .|.-+.+++|..........+.....
T Consensus 157 ~~---~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---------------- 215 (566)
T KOG2315|consen 157 KT---IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---------------- 215 (566)
T ss_pred cc---eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc----------------
Confidence 22 222 2357788888888853 23332 34455677776542221111110000
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
....-..+.|.+-|.-|++
T Consensus 216 -------------------------------------------------Fkadkvqm~WN~~gt~LLv------------ 234 (566)
T KOG2315|consen 216 -------------------------------------------------FKADKVQMKWNKLGTALLV------------ 234 (566)
T ss_pred -------------------------------------------------cccceeEEEeccCCceEEE------------
Confidence 0011111222222221111
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEE-
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT- 532 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~- 532 (764)
+....++..+. +--.+.++++.+++.......+...++|.++.|+++++-+++
T Consensus 235 -----------------------LastdVDktn~---SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 235 -----------------------LASTDVDKTNA---SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred -----------------------EEEEeecCCCc---cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEE
Confidence 00111222111 111245678888776666666677799999999999986665
Q ss_pred -EeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270 533 -VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSP 608 (764)
Q Consensus 533 -~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~sp 608 (764)
|..-..+.|||++ ++++..+ ..++-+++-|+|.|++|+.+|-+ |.|-|||+.+.+++..+.... .+-+.|+|
T Consensus 289 yGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~P 364 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSP 364 (566)
T ss_pred EecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcC
Confidence 4556789999986 4555555 35677889999999999988854 789999999988888876543 56689999
Q ss_pred CCCeEEEEEe------CCCeEEEEecc
Q 004270 609 NMDVLATAHV------DQNGVYLWVNR 629 (764)
Q Consensus 609 ~g~~lat~~~------d~~~i~lW~~~ 629 (764)
||++++|+.. |. +++||...
T Consensus 365 dGe~flTATTaPRlrvdN-g~Kiwhyt 390 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDN-GIKIWHYT 390 (566)
T ss_pred CCcEEEEEeccccEEecC-CeEEEEec
Confidence 9999999885 44 69999874
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.9e-13 Score=133.52 Aligned_cols=372 Identities=13% Similarity=0.180 Sum_probs=235.7
Q ss_pred ecCCcEEEEEccCCcccccceeeEecC--CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE
Q 004270 110 DIDGNMFIWAFKGIEENLAPVGHVKLD--DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSC 187 (764)
Q Consensus 110 ~~dg~v~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~ 187 (764)
...-.+.+|........ ...+... ......+++++++ +++..+.+..+.|++..+++.+.+.... .+.++
T Consensus 8 RsSe~~~l~~~~~~~~~---~~~f~~~~~~~~~~v~~~S~~G---~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L 79 (566)
T KOG2315|consen 8 RSSEGFYLFNGPGSKDA---VTVFEQNKTSRPCNVFAYSNNG---RLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDL 79 (566)
T ss_pred EccceeEEeccCCcccc---ccccccCCCCCcceeEEEcCCC---cEEEEEcCCeEEEEEccCCcEEEEeccc--eeeee
Confidence 33445778877654331 1222221 2224567788888 4555556778999999988766666543 78999
Q ss_pred EEcCCCCEEEEE-----Ec-----CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 188 VSSPALDVVAVG-----CS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 188 ~~sp~~~~la~g-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
.|||.+.+|.+= .. .-.+.+|+++++.....+....+.. .+..|+.|.. +++--..+.+.+|++.+.
T Consensus 80 ~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f 156 (566)
T KOG2315|consen 80 LFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSF 156 (566)
T ss_pred eecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchh--hhhhhhcceEEEEecCCc
Confidence 999999998762 11 2457899999977666666543333 5899999986 443344678999999875
Q ss_pred eeeeeeecccccCeeEEEEecCC-C-EEEE-----EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270 258 RLQSVIREAHDNAIISLHFFANE-P-VLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~-~-~l~s-----~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 330 (764)
+....- -|...|+.+.++|.+ . .+++ .|.-..+++|.+.... ....+....-....=..+.|.+-|.-|+
T Consensus 157 ~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ksFFkadkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 157 KTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKSFFKADKVQMKWNKLGTALL 233 (566)
T ss_pred cceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccchhhhccccccceeEEEeccCCceEE
Confidence 444333 378889999999973 3 3332 3445678888665221 1111111111122223455555443322
Q ss_pred E-EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 331 S-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 331 s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
. ++.| +...
T Consensus 234 vLastd-------VDkt--------------------------------------------------------------- 243 (566)
T KOG2315|consen 234 VLASTD-------VDKT--------------------------------------------------------------- 243 (566)
T ss_pred EEEEEe-------ecCC---------------------------------------------------------------
Confidence 2 2111 1000
Q ss_pred eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 489 (764)
+ .+=+.+..+++++++.......+ ...++|.++.|+|+++-+
T Consensus 244 --------------------------n---~SYYGEq~Lyll~t~g~s~~V~L---------~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 244 --------------------------N---ASYYGEQTLYLLATQGESVSVPL---------LKEGPVHDVTWSPSGREF 285 (566)
T ss_pred --------------------------C---ccccccceEEEEEecCceEEEec---------CCCCCceEEEECCCCCEE
Confidence 0 00011223444444421222111 457899999999999766
Q ss_pred EEE--eCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEE
Q 004270 490 ISA--GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFC 564 (764)
Q Consensus 490 ~s~--~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~ 564 (764)
+.+ -.-..+.|+|++. .++..+ ..++-.++-|+|.|++++.++-+ |.+.|||+.+.+++..+..... +-+.
T Consensus 286 ~VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~e 361 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFE 361 (566)
T ss_pred EEEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEE
Confidence 544 3567888998763 233222 23677889999999999887754 7999999999999988886543 5678
Q ss_pred EcCCCcEEEEEeC------CCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270 565 FSEDGKWLLSSGM------DGSLRIWDVILARQIDAIHVDVSITALSLSP 608 (764)
Q Consensus 565 ~s~dg~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp 608 (764)
|+|||++++|++. |+.++||+.. |+++..-...+....+.|-|
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeee
Confidence 9999999998874 7789999965 77777666555677788876
No 224
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.68 E-value=5.6e-12 Score=121.50 Aligned_cols=435 Identities=14% Similarity=0.132 Sum_probs=265.4
Q ss_pred ecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE-------EcCCeEE
Q 004270 134 KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-------CSDGKIH 206 (764)
Q Consensus 134 ~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g-------~~dg~i~ 206 (764)
.+|.-........|+-+...++..+.|. +..+++.+|+..+.. .|-+-|+.-.|+|+|+.+|.. ...+.+.
T Consensus 33 ~~h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~rit-S~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly 110 (668)
T COG4946 33 GFHEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLRIT-SGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLY 110 (668)
T ss_pred hhhhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeEEe-cccceeccccCCCCCcEEEEEEEEecCCCccccEE
Confidence 3454444455578887777777766664 666678888776644 457888999999999988862 2235688
Q ss_pred EEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE----EEEECCCcee-eeeeecccccCeeEEEEecCCC
Q 004270 207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI----SIWNLEKRRL-QSVIREAHDNAIISLHFFANEP 281 (764)
Q Consensus 207 iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i----~iwd~~~~~~-~~~~~~~h~~~v~~l~~~~~~~ 281 (764)
+.+.+.|+..+.--.+ ..--.-.-|.|||+ ++++...-.-. .+|.+..... ... -.-++.+.+.+- ||
T Consensus 111 ~v~~e~Ge~kRiTyfG-r~fT~VaG~~~dg~-iiV~TD~~tPF~q~~~lYkv~~dg~~~e~---LnlGpathiv~~-dg- 183 (668)
T COG4946 111 VVPSEDGEAKRITYFG-RRFTRVAGWIPDGE-IIVSTDFHTPFSQWTELYKVNVDGIKTEP---LNLGPATHIVIK-DG- 183 (668)
T ss_pred EEeCCCCcEEEEEEec-cccceeeccCCCCC-EEEEeccCCCcccceeeeEEccCCceeee---ccCCceeeEEEe-CC-
Confidence 8888888765433332 22233455999998 77665432211 2222221111 111 122344444443 33
Q ss_pred EEEEEcCCC------------cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc-
Q 004270 282 VLMSASADN------------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ- 348 (764)
Q Consensus 282 ~l~s~~~d~------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~- 348 (764)
.++.|-.-- .=++|.-.......+....+.+|-..+. .- .++..+....+|.=.+|++.-...
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~Pm---IV-~~RvYFlsD~eG~GnlYSvdldGkD 259 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPM---IV-GERVYFLSDHEGVGNLYSVDLDGKD 259 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCce---EE-cceEEEEecccCccceEEeccCCch
Confidence 333322111 1245543322222233333444433322 21 222233334455555555432111
Q ss_pred cccccchhhhHHHhhccchhhhhccCceeEeeeccc--ccccccceeEeeeCCceEEEEEccceeecceeec-CCCCCCC
Q 004270 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI--RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR-PCPENPT 425 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~ 425 (764)
.+. -+.|.-.-. ...|+..++. ...+.++++|..+..+.+..+. +......
T Consensus 260 lrr------------------------HTnFtdYY~R~~nsDGkrIvF--q~~GdIylydP~td~lekldI~lpl~rk~k 313 (668)
T COG4946 260 LRR------------------------HTNFTDYYPRNANSDGKRIVF--QNAGDIYLYDPETDSLEKLDIGLPLDRKKK 313 (668)
T ss_pred hhh------------------------cCCchhccccccCCCCcEEEE--ecCCcEEEeCCCcCcceeeecCCccccccc
Confidence 000 001111111 1234444444 3457788998887766544433 1111111
Q ss_pred CeEEE------E-Ecc-CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC-
Q 004270 426 AVKAC------T-ISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG- 496 (764)
Q Consensus 426 ~v~~~------~-~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg- 496 (764)
....+ . |++ +|++++..+ .|...+.+...+-.++ .+|.+.|.-..+..+++-++.|..||
T Consensus 314 ~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq----------v~~~~~VrY~r~~~~~e~~vigt~dgD 382 (668)
T COG4946 314 QPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ----------VGKKGGVRYRRIQVDPEGDVIGTNDGD 382 (668)
T ss_pred cccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE----------cCCCCceEEEEEccCCcceEEeccCCc
Confidence 11111 1 222 567776664 4666777666554443 27888899888888888899999999
Q ss_pred eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270 497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s 576 (764)
.+-++|..+++.......-+.|.++..+++|++++++.+...+.++|+++++....=+...+-|+.++|||+++|+|-+-
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence 89999999988777766679999999999999999999999999999999987665556668899999999999999876
Q ss_pred CCC----cEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEe
Q 004270 577 MDG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV 618 (764)
Q Consensus 577 ~dg----~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~ 618 (764)
-+| .|+++|+..++..+.-...+.=.+-+|.|||++|..-+.
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 655 699999998888776555445677899999999876654
No 225
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.66 E-value=2.9e-13 Score=131.71 Aligned_cols=359 Identities=13% Similarity=0.184 Sum_probs=242.1
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg 243 (764)
..|+..+...-..+....-++...++||.|.+|++.... .|.+|.-.....+..+.+ ..|..+.|+|.++ +|.+-
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~k-YL~tw 89 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH---PDVKYLDFSPNEK-YLVTW 89 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec---CCceecccCcccc-eeeee
Confidence 456655555555555567889999999999999988775 489999888777777765 3699999999999 88876
Q ss_pred eCC---------------CcEEEEECCCceeeeeeecccccC--ee-EEEEecCCCEEEEEcCCCcEEEEEecCCCCCce
Q 004270 244 ASS---------------GVISIWNLEKRRLQSVIREAHDNA--II-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 305 (764)
Q Consensus 244 ~~d---------------g~i~iwd~~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~ 305 (764)
+.. ..+.+||+.++.++..+. .-..+ .+ -+.|+-+.++++-. ....+.++++ +..-...
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~ 166 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH 166 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccC
Confidence 533 359999999999998887 44433 44 67888888877655 3457899986 3322212
Q ss_pred eeEeccCCCCCCeeEEEecCC--CEEEE-----EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270 306 LLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (764)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (764)
....+ ....+....++|.+ ..|+. .+.++++++|.+..+.....-.
T Consensus 167 p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~------------------------- 219 (561)
T COG5354 167 PFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN------------------------- 219 (561)
T ss_pred chhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------------------------
Confidence 22222 13567778888853 33332 3456667777665332211100
Q ss_pred eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-----------cCCc
Q 004270 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-----------AGGW 447 (764)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-----------~~g~ 447 (764)
++. ..-..+.|.+.|+++++-. ....
T Consensus 220 -------------------------lfk------------------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 220 -------------------------LFK------------------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred -------------------------eEe------------------ecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 000 1223455666666655421 1246
Q ss_pred EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe--CCCeEEEEECCCCCeeeeEecCcceEEEEEee
Q 004270 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 525 (764)
Q Consensus 448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~ 525 (764)
+++++++....... ..-.++|...+|.|.++.+++.+ .+..+.++|++.. +...-....-..+.|+|
T Consensus 257 Lyl~~~~e~~i~V~---------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp 325 (561)
T COG5354 257 LYLLRITERSIPVE---------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP 325 (561)
T ss_pred EEEEeeccccccee---------ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC
Confidence 77888773333222 14578999999999888776554 7788999998876 44444456667788999
Q ss_pred cCCEEEEEeCC---CeEEEEEccCCeEEE-EeecCCCCeeEEEEcCCCcEEEEEe------CCCcEEEEEcCccceEEEE
Q 004270 526 VNGLLATVADD---LVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSG------MDGSLRIWDVILARQIDAI 595 (764)
Q Consensus 526 ~~~~la~~~~d---~~i~v~d~~~~~~~~-~~~~h~~~i~~l~~s~dg~~l~s~s------~dg~i~iwd~~~~~~~~~~ 595 (764)
.++++++++-| |.+.+||......+. .+.+.. .+-+.|+|||+++.+.. .|..|.|||+......
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--- 400 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--- 400 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---
Confidence 99999987665 789999988765444 676543 34568999999988664 3788999998743322
Q ss_pred eeCCceEEEEEcCCCCeEEEEEeCC
Q 004270 596 HVDVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 596 ~~~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
..+.+.|.|.|++..+.+.+.
T Consensus 401 ----el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ----ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----hhhhccccCCcccceeeccCC
Confidence 567788999888887776654
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=6.8e-16 Score=147.72 Aligned_cols=267 Identities=15% Similarity=0.204 Sum_probs=209.7
Q ss_pred CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 304 (764)
-....+.++.+|+ .|+.|+..|.|..+|..++++...+. -...|.++.|..+.++++++- .+.+.|||-..
T Consensus 130 FGPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~G----- 200 (545)
T KOG1272|consen 130 FGPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNG----- 200 (545)
T ss_pred cCCeeeeecCCcc-EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecCCC-----
Confidence 3467899999999 78888899999999999999988886 567899999999988887765 56788885322
Q ss_pred eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (764)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (764)
..+..+..| ..|..+.|.|---+|++++..|.++.-|+..++.+.++..+
T Consensus 201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~----------------------------- 250 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG----------------------------- 250 (545)
T ss_pred cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----------------------------
Confidence 344444433 57889999998888999999999999999988877665432
Q ss_pred ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC
Q 004270 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (764)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~ 464 (764)
.+.+..++-.|-...+-+|..+|+|.+|...+...+..+.
T Consensus 251 ---------------------------------------~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL- 290 (545)
T KOG1272|consen 251 ---------------------------------------AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL- 290 (545)
T ss_pred ---------------------------------------CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-
Confidence 1566777788888899999999999999999998888775
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEE-
Q 004270 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD- 543 (764)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d- 543 (764)
.|.++|.+++++++|++++|+|.|..++|||++....+.++....+...+++|..| +||. +....|.||.
T Consensus 291 -------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d 361 (545)
T KOG1272|consen 291 -------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLAL-SYGDHVQIWKD 361 (545)
T ss_pred -------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceee-ecCCeeeeehh
Confidence 89999999999999999999999999999999998888888777888889998644 4444 3455788884
Q ss_pred ccCCe--EEEEeecC--CCCeeEEEEcCCCcEEEEEeCCC
Q 004270 544 VVALR--MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 544 ~~~~~--~~~~~~~h--~~~i~~l~~s~dg~~l~s~s~dg 579 (764)
.-.+. .-..+-.| .+.|.++.|.|-...|-.|...|
T Consensus 362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 22211 11112223 25789999999777776665544
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.8e-14 Score=139.45 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=207.4
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
....+.|..+|||++++|+|...-.|++||+.+-.+..... -....|.-.-.+.|-..++.-..|++|.+.. ..+
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-lDae~V~feiLsDD~SK~v~L~~DR~IefHa---k~G- 125 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-LDAEVVDFEILSDDYSKSVFLQNDRTIEFHA---KYG- 125 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-ccccceeEEEeccchhhheEeecCceeeehh---hcC-
Confidence 46678999999999999999999999999998766544332 1223344444455555666667788876652 111
Q ss_pred ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (764)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (764)
...... -...-..++++.-..-|+.++....|.-+++..+.....+.
T Consensus 126 -~hy~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~------------------------------ 172 (703)
T KOG2321|consen 126 -RHYRTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE------------------------------ 172 (703)
T ss_pred -eeeeee--cCcCCccccccCCCccEEEeecCcceEEEEccccccccccc------------------------------
Confidence 111110 11223455665544445555556667778887765544332
Q ss_pred cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec
Q 004270 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463 (764)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~ 463 (764)
...+.+.++.+++...++++|+.+|.|..||.........+.
T Consensus 173 --------------------------------------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 173 --------------------------------------TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred --------------------------------------cccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence 223788999999999999999999999999999887777664
Q ss_pred CccccccccccC-----cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEeecC-CEEEEEeC
Q 004270 464 DMSERSNYAHNG-----EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVN-GLLATVAD 535 (764)
Q Consensus 464 ~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~-~~la~~~~ 535 (764)
.... ...|.+ .|+++.|+.+|-.++.|..+|.+.|||+++.+++..-.+. .+|..+.|.+.+ .--++..+
T Consensus 215 ~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 215 AASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred cccc--cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc
Confidence 3222 113333 4999999999999999999999999999999988877766 789999997753 23344456
Q ss_pred CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 536 d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
...++|||-.+|+....+.. +..++++|+-|++.++++|-.++.+..|=++.
T Consensus 293 k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 67899999999999888874 45599999999999999999888888877664
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.5e-14 Score=129.04 Aligned_cols=305 Identities=11% Similarity=0.146 Sum_probs=195.8
Q ss_pred CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCC
Q 004270 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
..+..++|++.-. -++++..|-.|++||-.. +....++......|++++|-|.+. .|+.|+. +-|.+|..+.....
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 4678899998654 678888999999999766 555666645667899999999654 6666665 45999987654333
Q ss_pred cee----------eEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270 304 PRL----------LRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 372 (764)
Q Consensus 304 ~~~----------~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (764)
.+. +....|| .+|++++|.+||..+++++ .|..|.+||..++......
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-------------------- 234 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-------------------- 234 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--------------------
Confidence 232 2223455 7899999999999999887 4678999998876543221
Q ss_pred cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 004270 373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 452 (764)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~ 452 (764)
....+.++-+.|||||.++++++-|+..++|+
T Consensus 235 ------------------------------------------------~~glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 235 ------------------------------------------------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred ------------------------------------------------ccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 11237788899999999999999999999996
Q ss_pred CcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEE
Q 004270 453 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 532 (764)
........... --.+.|...+|+|+|++|+.+.. |.-++|.+.-...-..+. -.
T Consensus 267 e~q~wt~erw~--------lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~-----------------~~ 320 (445)
T KOG2139|consen 267 ENQSWTKERWI--------LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL-----------------RP 320 (445)
T ss_pred hcccceeccee--------ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc-----------------Cc
Confidence 54433322222 23458999999999988765554 333344432111100000 01
Q ss_pred EeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC--------cEEEEEcCccceEEEEe----eCCc
Q 004270 533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG--------SLRIWDVILARQIDAIH----VDVS 600 (764)
Q Consensus 533 ~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg--------~i~iwd~~~~~~~~~~~----~~~~ 600 (764)
++.-...-+-|+..-....--+--.+++.+++|.|.|.+||+.-..+ .|.+||....-.+.... ....
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~ 400 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY 400 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence 11112222333321111000011246789999999999999876543 46778876544433321 1223
Q ss_pred eEEEEEcC---CCCeEEEEEeCCCeEEEEec
Q 004270 601 ITALSLSP---NMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 601 v~~l~~sp---~g~~lat~~~d~~~i~lW~~ 628 (764)
...++|+| +|.+|..+=..|. +.-|.+
T Consensus 401 P~~IsF~pl~n~g~lLsiaWsTGr-iq~ypl 430 (445)
T KOG2139|consen 401 PAYISFGPLKNEGRLLSIAWSTGR-IQRYPL 430 (445)
T ss_pred CceEEeeecccCCcEEEEEeccCc-eEeeee
Confidence 56667776 6777777766664 655554
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=5.5e-15 Score=144.15 Aligned_cols=93 Identities=15% Similarity=0.306 Sum_probs=87.5
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEE
Q 004270 474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 552 (764)
Q Consensus 474 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~ 552 (764)
.+.|...+|+|||++||+.+.||.+||+|+.+.+++..++.- +...|++|||||+++++|++|.-|.||.+..++++..
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 458899999999999999999999999999998888776654 8899999999999999999999999999999999999
Q ss_pred eecCCCCeeEEEEc
Q 004270 553 FEGHTDRITDFCFS 566 (764)
Q Consensus 553 ~~~h~~~i~~l~~s 566 (764)
-+||...|+.++|.
T Consensus 370 GqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFD 383 (636)
T ss_pred ccccccceeeEeec
Confidence 99999999999998
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.8e-14 Score=139.43 Aligned_cols=277 Identities=14% Similarity=0.177 Sum_probs=201.4
Q ss_pred ccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 266 AHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
.|....+.+..+|||++++ +|..--.|++||+.... ++.-.... ..|.-.-.+.|-..++.--.|++|.+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 4677889999999999765 45557789999987542 22222222 33443444445555555666776655431
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
... |.-. .-
T Consensus 124 ~G~--------------------------------------------------------------------hy~~---RI 132 (703)
T KOG2321|consen 124 YGR--------------------------------------------------------------------HYRT---RI 132 (703)
T ss_pred cCe--------------------------------------------------------------------eeee---ec
Confidence 100 0000 00
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
+..-..++++.-..-|++++....|+.+|+..|..+..+. ...+.++++..++...+|++|+.+|.|.+||.
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~--------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE--------TDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEccccccccccc--------cccccceeeeecCccceEEecccCceEEEecc
Confidence 1222334444444456667777789999999999988885 55689999999999999999999999999999
Q ss_pred CCCCeeeeEecCc------------ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-cCCCCeeEEEEcCC--
Q 004270 504 KGRDLKSRWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSED-- 568 (764)
Q Consensus 504 ~~~~~~~~~~~~~------------~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~d-- 568 (764)
+.......+.... .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.|.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 9888777776543 38999999999999999999999999999988765543 33467899999775
Q ss_pred CcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 569 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
+..|+|. ....++|||-.+|+....+.....++.+++-|++-++.+|-.+.. +..+=+
T Consensus 285 q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~-m~~yyi 342 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK-MHTYYI 342 (703)
T ss_pred CceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc-ceeEEc
Confidence 3455554 346799999999999999998888999999999999999987774 444433
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=5.6e-15 Score=144.08 Aligned_cols=207 Identities=15% Similarity=0.229 Sum_probs=151.1
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEE-----ccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-----SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 471 (764)
.-...+++|++....-....+..........++-+| .+.|--+++|-..|.+.+.+.........+.... .
T Consensus 141 nvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r----~ 216 (636)
T KOG2394|consen 141 NVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER----L 216 (636)
T ss_pred ecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcc----c
Confidence 345667788777422211111111122233333333 5677789999999999999987743333232110 1
Q ss_pred cccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCC----------------------------CeeeeEe-cCcceEEE
Q 004270 472 AHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR----------------------------DLKSRWE-VGCSLVKI 521 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~----------------------------~~~~~~~-~~~~i~~~ 521 (764)
-.+..|+++.|-|.+ ..++.+-.+|.+.+||..-. .++..+. ....|...
T Consensus 217 i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 217 INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF 296 (636)
T ss_pred ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence 234789999998855 45666678899999975311 1111111 12678899
Q ss_pred EEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-
Q 004270 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS- 600 (764)
Q Consensus 522 ~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~- 600 (764)
+|+|||++||+.+.||.+||||..+.+++..++.--+...+++|||||+||++|++|--|.||.+...+.+..-++|..
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW 376 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW 376 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc
Confidence 9999999999999999999999999998888887788999999999999999999999999999999999999888877
Q ss_pred eEEEEEc
Q 004270 601 ITALSLS 607 (764)
Q Consensus 601 v~~l~~s 607 (764)
|..++|.
T Consensus 377 Vs~VaFD 383 (636)
T KOG2394|consen 377 VSVVAFD 383 (636)
T ss_pred eeeEeec
Confidence 9999997
No 232
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=5.8e-14 Score=128.49 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=164.8
Q ss_pred CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 004270 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY 212 (764)
Q Consensus 136 ~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~ 212 (764)
-...+...+++++. ..++++.....|.||..... +..++++.|...|+++.|+|..+.|++++.|..-++|....
T Consensus 9 ~~~pitchAwn~dr--t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR--TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCC--ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 34556777899998 78999999999999987654 57899999999999999999999999999999999999843
Q ss_pred C-c--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee---eeeeecccccCeeEEEEecCCCEEEEE
Q 004270 213 D-E--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSA 286 (764)
Q Consensus 213 ~-~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~ 286 (764)
+ + +...+... +...+++.|+|.+. .+|+|+....|.||-++...- .+.++..+.+.|++++|+|++-+|++|
T Consensus 87 ~~~WkptlvLlRi-NrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRI-NRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEe-ccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 3 2 33344443 78899999999998 899999999999988765432 222334678899999999999999999
Q ss_pred cCCCcEEEEEecCCCC--------------CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccc
Q 004270 287 SADNSIKMWIFDTTDG--------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (764)
Q Consensus 287 ~~d~~i~vw~~~~~~~--------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~ 347 (764)
+.|+..+|+..-...- ...+........+.+..+.|+|+|..|+-.+.|.++.+-|...+.
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999986422110 011222233556789999999999999999999999998876553
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=4.5e-14 Score=132.80 Aligned_cols=273 Identities=13% Similarity=0.181 Sum_probs=189.9
Q ss_pred CCEEEEEEeeCCCCEEEEEe-CCCcEEEEECCCceeeeee-----ecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 225 GAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVI-----REAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~-~dg~i~iwd~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
..|++++|..+++.-+..+. .+..+..+.+........+ ......+|..+... |+ .|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEecc
Confidence 46777888766653333333 6666777776666554443 11345567766654 33 68888889999999877
Q ss_pred CCCCCceeeEeccCCCCCCeeEEEecCC-CEEEEEeCC--CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270 299 TTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375 (764)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (764)
.+......+..+..+ .++..+.-++.. ..+++||.. ..+.+||+.+.+++
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi-------------------------- 186 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI-------------------------- 186 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--------------------------
Confidence 554222222222222 445555555533 344557766 67788887654221
Q ss_pred eeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC
Q 004270 376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (764)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~ 455 (764)
|...+... . + -+=.|-+
T Consensus 187 -----------------------------w~aKNvpn-----------------------D-~-----L~LrVPv----- 203 (412)
T KOG3881|consen 187 -----------------------------WSAKNVPN-----------------------D-R-----LGLRVPV----- 203 (412)
T ss_pred -----------------------------eeccCCCC-----------------------c-c-----ccceeee-----
Confidence 11111000 0 0 0001222
Q ss_pred CcccceecCccccccccccCcEEEEEECCC--CCEEEEEeCCCeEEEEECCCC-CeeeeEecC-cceEEEEEeecCCEEE
Q 004270 456 GISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLA 531 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~la 531 (764)
.++++.|-+. ...+++++.-+.+++||.+.+ +++..+... .+++++...|.+++++
T Consensus 204 --------------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 204 --------------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred --------------------eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 3455667665 788999999999999999855 566677665 8999999999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEE-eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCC
Q 004270 532 TVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN 609 (764)
Q Consensus 532 ~~~~d~~i~v~d~~~~~~~~~-~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~ 609 (764)
+|..-+.+..||+++++.... +.+-.+.|+++..+|.+++|+++|.|..|||+|+++.+++......+.++++.+.++
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999999999999999887 899999999999999999999999999999999999888888777777787777654
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=3.1e-14 Score=131.33 Aligned_cols=330 Identities=16% Similarity=0.225 Sum_probs=213.1
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce----EEEEeccC------------CCCEEEEEEeeCCC-CEEEEE
Q 004270 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE----LVTFTHSM------------RGAVTALAFSSDGQ-PLLASG 243 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~----~~~~~~~~------------~~~v~~l~fs~d~~-~~l~sg 243 (764)
..-|.++.|...|.+||+|..+|+|.++.-..... ..+..+.| ...|..+.|.+++. ..+...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56789999999999999999999999996442221 22222211 24688899998764 245556
Q ss_pred eCCCcEEEEECCCcee-----------------------------------eeeeecccccCeeEEEEecCCCEEEEEcC
Q 004270 244 ASSGVISIWNLEKRRL-----------------------------------QSVIREAHDNAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 244 ~~dg~i~iwd~~~~~~-----------------------------------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 288 (764)
+.|.+|++|.+..... ...+..+|.--|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 7899999998753311 1222257888899999999999888875
Q ss_pred CCcEEEEEecCCCCCceeeEeccC----CCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270 289 DNSIKMWIFDTTDGDPRLLRFRSG----HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (764)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~----h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (764)
|=.|.+|+++..++...++..... -..-|++..|+| .-+.++-.+..|+|++.|++........
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h----------- 252 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH----------- 252 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch-----------
Confidence 678999998877665555433221 234578888998 4567777788899999998643211100
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
T Consensus 253 -------------------------------------------------------------------------------- 252 (433)
T KOG1354|consen 253 -------------------------------------------------------------------------------- 252 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCeeeeEecCc------
Q 004270 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGC------ 516 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~------ 516 (764)
-.+|.......-..+ ..+--..|..+.|++.|+++++-.. -+|++||+. ..+++.+++.+.
T Consensus 253 ----sKlfEepedp~~rsf-------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 253 ----SKLFEEPEDPSSRSF-------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred ----hhhhccccCCcchhh-------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 000000000000000 0134567889999999999998765 689999994 566676666431
Q ss_pred ----------ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEE-EEeecCCCC--eeEEEEcCCCcEEEEEeCCCcEEE
Q 004270 517 ----------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV-RKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRI 583 (764)
Q Consensus 517 ----------~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~-~~~~~h~~~--i~~l~~s~dg~~l~s~s~dg~i~i 583 (764)
.-..++|+.++.++++|+....+++|+...|... .++...... ...+ . .-+.+.+++.....
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~-~--k~~~V~~~g~r~~~-- 395 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV-L--KLRLVSSSGKRKRD-- 395 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc-c--cceeeecCCCcccc--
Confidence 1245789989999999999999999997766432 223322221 1111 1 12344444444331
Q ss_pred EEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 004270 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626 (764)
Q Consensus 584 wd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW 626 (764)
.--+..+.....+...+|+|..+.+|.+..+. ++++
T Consensus 396 -----~~~vd~ldf~kkilh~aWhp~en~ia~aatnn--lyif 431 (433)
T KOG1354|consen 396 -----EISVDALDFRKKILHTAWHPKENSIAVAATNN--LYIF 431 (433)
T ss_pred -----ccccchhhhhhHHHhhccCCccceeeeeecCc--eEEe
Confidence 12233344445578899999999999998876 6765
No 235
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.62 E-value=1e-09 Score=123.86 Aligned_cols=478 Identities=14% Similarity=0.100 Sum_probs=280.9
Q ss_pred cccceEEEEE--eCCEEEEEecCCcEEEE----EccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEE
Q 004270 92 HSAKVNLLLL--FGEHILSIDIDGNMFIW----AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (764)
Q Consensus 92 h~~~v~~l~~--~g~~l~s~~~dg~v~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~i 165 (764)
..+.|.++.+ +...|+.+..+|.|.+. +..+... .....-+..+..+.||||. ..|+..+.+|++.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-----E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-----EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-----EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEE
Confidence 4567888875 67889999999999998 4443332 2222234567788899999 78999999998887
Q ss_pred EeCCCCeEEE------------------------EEcC------------------------CCCCeEEEEEcCCCCEEE
Q 004270 166 WNISTKKKLY------------------------EFKG------------------------WGSSISSCVSSPALDVVA 197 (764)
Q Consensus 166 wd~~~~~~~~------------------------~~~~------------------------h~~~i~~~~~sp~~~~la 197 (764)
.+ ++...+. .|+| +...-..++|-.||.++|
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 64 2222221 1111 222445788999999999
Q ss_pred EEEc---C---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC---CCcEEEEECCCceeeeeeec---
Q 004270 198 VGCS---D---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIRE--- 265 (764)
Q Consensus 198 ~g~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~--- 265 (764)
+.+. . ..++||+-+ |....+- ..-.+--.+++|.|.|. ++|+... ...|.+|.- +|-....+..
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~ 301 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCC
Confidence 8875 2 579999854 5533332 23345557899999999 7877653 456777773 4433333321
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEe
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~ 343 (764)
.....|..+.|++|+..|+..-.|. |.+|-...- .+-+...+. .....+..+.|+| +...|...+.+|.+..++.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY--HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY--HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC--EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 3456899999999999999977655 999965433 222222222 2233455699999 5566777777777877665
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
.-...... ... ..+.-..+--++..+.+-.++....+.......-..
T Consensus 379 ~~~v~~s~--------------------------------~~~-~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 379 AWDVSRSP--------------------------------GSS-PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred EEEEEecC--------------------------------CCC-ccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 32211100 000 001112223344455555555444433332222234
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc--------eecCc--cccccccccCcEEEEEECCCCCEEEEEe
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--------SYLDM--SERSNYAHNGEVVGVACDSTNTLMISAG 493 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~--------~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 493 (764)
+..|.+++|++++..+++-..+|.+.+|......... .+... ...........+..++|..++..++...
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 5889999999999999999999999999865543221 11100 0000112245678888888877766666
Q ss_pred CC---CeEEEEECCCCCe---eeeE-ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE-EEEeecCCCCeeEEEE
Q 004270 494 YH---GDIKVWDFKGRDL---KSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCF 565 (764)
Q Consensus 494 ~d---g~v~iwd~~~~~~---~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~-~~~~~~h~~~i~~l~~ 565 (764)
.+ ..+.++++...+. .... .....+..+...++...++.-..+|.+..++...... +..|......+....+
T Consensus 506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~ 585 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQI 585 (928)
T ss_pred cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEE
Confidence 54 6788888743322 2222 2234555555555555577777888888766554322 2233322222222233
Q ss_pred cCCC--cEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 566 SEDG--KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 566 s~dg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.... ..++.-+..|.+++ +++.+ ...+++.+.+ +.+|+.+.... .+++..+.
T Consensus 586 ~~~~~~~~~~GLs~~~~Ly~----n~~~l-----a~~~tSF~v~--~~~Ll~TT~~h-~l~fv~L~ 639 (928)
T PF04762_consen 586 NGSEDKRVLFGLSSNGRLYA----NSRLL-----ASNCTSFAVT--DSFLLFTTTQH-TLKFVHLN 639 (928)
T ss_pred CCccceeEEEEECCCCEEEE----CCEEE-----ecCCceEEEE--cCEEEEEecCc-eEEEEECc
Confidence 3222 13443344444443 23332 2567777774 55666666665 48888876
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.8e-13 Score=143.71 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=157.8
Q ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.|.+||...... +.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++....... .+.+..++|+|||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCE
Confidence 689999865443 444455778999999999999987642 35799999988764332222 344567899999995
Q ss_pred EEEEEeCCC--cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCC
Q 004270 239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (764)
Q Consensus 239 ~l~sg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (764)
++++.+.+| .|.+||+++++...... +...+....|+|||+.|+..+. ++...+|.++...+..+.+ ..+..
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCC
Confidence 555555555 59999998887654433 4456788999999998877665 4567788766554433332 23334
Q ss_pred CCeeEEEecCCCEEEEEeCC---CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270 316 PPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (764)
......|+|||++++..+.+ ..+.+||+.++... .+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~L---------------------------------------- 370 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL---------------------------------------- 370 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ee----------------------------------------
Confidence 45678999999999876643 24666666443211 00
Q ss_pred eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc---EEEEECcCCcccceecCccccc
Q 004270 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW---IERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~---i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
.. . .......|+|||++++.++.++. +.++++. |.....+.
T Consensus 371 -------------------------t~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~------ 414 (429)
T PRK03629 371 -------------------------TD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP------ 414 (429)
T ss_pred -------------------------CC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc------
Confidence 00 0 11234679999999999988764 6667774 43344443
Q ss_pred cccccCcEEEEEECCC
Q 004270 470 NYAHNGEVVGVACDST 485 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~ 485 (764)
.|.+.+...+|+|-
T Consensus 415 --~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 415 --ATDGQVKFPAWSPY 428 (429)
T ss_pred --cCCCCcCCcccCCC
Confidence 67778888888873
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=4.6e-12 Score=129.29 Aligned_cols=282 Identities=15% Similarity=0.218 Sum_probs=187.4
Q ss_pred EEEEcCC----CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC----CCcEEEEEeecc-ccccccc
Q 004270 283 LMSASAD----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----DRAFRLFSVIQD-QQSRELS 353 (764)
Q Consensus 283 l~s~~~d----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~----dg~i~i~d~~~~-~~~~~~~ 353 (764)
++.|+.. +.|.+|+++...+....+... .-...+..++++|++++|++... ++.|..|++... .....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445544 789999997776655555442 34566778999999999998876 467888887654 1111111
Q ss_pred chhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc
Q 004270 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (764)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s 433 (764)
.. .........++++
T Consensus 81 ~~-----------------------------------------------------------------~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 81 SV-----------------------------------------------------------------PSGGSSPCHIAVD 95 (345)
T ss_dssp EE-----------------------------------------------------------------EESSSCEEEEEEC
T ss_pred ee-----------------------------------------------------------------ccCCCCcEEEEEe
Confidence 00 0012566789999
Q ss_pred cCCCEEEEEe-cCCcEEEEECcC-CcccceecCc-----cccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCC
Q 004270 434 ACGNFAVLGT-AGGWIERFNLQS-GISRGSYLDM-----SERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG 505 (764)
Q Consensus 434 ~~g~~l~~g~-~~g~i~i~~~~~-~~~~~~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~ 505 (764)
|++++++++. .+|.+.++++.. |......... .+...........++.++|+++++++.. ....|.+|++..
T Consensus 96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 9999998886 588999999987 3333221100 0000112234567899999999888775 345799999986
Q ss_pred CC--eee--eE--ecCcceEEEEEeecCCEEEEEeC-CCeEEEEEcc--CCe--EEEEeec----C--CCCeeEEEEcCC
Q 004270 506 RD--LKS--RW--EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALR--MVRKFEG----H--TDRITDFCFSED 568 (764)
Q Consensus 506 ~~--~~~--~~--~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~--~~~--~~~~~~~----h--~~~i~~l~~s~d 568 (764)
.. +.. .+ ........++|+|+++++.+..+ ++.|.++++. +++ .+..+.. . ......|+++||
T Consensus 176 ~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd 255 (345)
T PF10282_consen 176 DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD 255 (345)
T ss_dssp TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence 65 322 22 33478899999999998877654 6789999988 443 2333321 1 125778999999
Q ss_pred CcEEEEEe-CCCcEEEEEcC--ccc--eEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 569 GKWLLSSG-MDGSLRIWDVI--LAR--QIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 569 g~~l~s~s-~dg~i~iwd~~--~~~--~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
|++|.++. .+.+|.+|++. +|+ .+..+..... ...++++|+|++|+++..++..|.+|+++.
T Consensus 256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 99988765 56789999993 343 3445554333 899999999999999998888899998753
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=1.2e-11 Score=126.13 Aligned_cols=309 Identities=15% Similarity=0.178 Sum_probs=198.1
Q ss_pred EEEEeCC----CcEEEEEC--CCceeeeeeecccccCeeEEEEecCCCEEEEEcC----CCcEEEEEecCCCCCceeeEe
Q 004270 240 LASGASS----GVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 240 l~sg~~d----g~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~~~~~~ 309 (764)
+++|+.. +.|.+|++ +++++...-..........++++|++++|.++.. ++.|..|.++...+....+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3455544 68888887 5555433322234556778999999999988876 578999998876555555555
Q ss_pred ccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270 310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (764)
..........++++|++++|+++. .+|++.++++...........
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~---------------------------------- 127 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ---------------------------------- 127 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE----------------------------------
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee----------------------------------
Confidence 544556778899999999999887 589999999876432222110
Q ss_pred ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECcCCcc-cceecCcc
Q 004270 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGIS-RGSYLDMS 466 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~~~~-~~~~~~~~ 466 (764)
++... ..-..+.........++.++|+|+++++.... ..|.+|++..... +.....
T Consensus 128 ---------------~~~~~-----g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-- 185 (345)
T PF10282_consen 128 ---------------TVRHE-----GSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-- 185 (345)
T ss_dssp ---------------EEESE-----EEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE--
T ss_pred ---------------ecccC-----CCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec--
Confidence 00000 00001112334678899999999998886543 4899999876552 111000
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECC--CCCe--eeeEec-------CcceEEEEEeecCCEEEEEe
Q 004270 467 ERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK--GRDL--KSRWEV-------GCSLVKIVYHRVNGLLATVA 534 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~--~~~~--~~~~~~-------~~~i~~~~~s~~~~~la~~~ 534 (764)
.........+.++|+|+++++.... .++.|.++++. ++.. +..+.. ......++++|||++|.++.
T Consensus 186 --~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 186 --IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp --EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred --cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 0024556789999999998886655 67889999988 4422 222221 12578899999999988776
Q ss_pred -CCCeEEEEEcc--CC--eEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEc--CccceEEEEe--eCCceEEE
Q 004270 535 -DDLVIRLFDVV--AL--RMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQIDAIH--VDVSITAL 604 (764)
Q Consensus 535 -~d~~i~v~d~~--~~--~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~--~~~~~~~~~~--~~~~v~~l 604 (764)
....|.+|+++ ++ +.+..+.........++++|+|++|+++. .++.|.+|++ .+|.+...-. .-....|+
T Consensus 264 r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 264 RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 46789999993 23 34444544445578999999999999887 5678999976 4676654432 12235666
Q ss_pred EE
Q 004270 605 SL 606 (764)
Q Consensus 605 ~~ 606 (764)
.|
T Consensus 344 ~f 345 (345)
T PF10282_consen 344 VF 345 (345)
T ss_dssp EE
T ss_pred eC
Confidence 65
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.4e-13 Score=141.60 Aligned_cols=170 Identities=12% Similarity=0.042 Sum_probs=119.4
Q ss_pred eEEEEEccCCCEEEEE-ecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC-Ce--EEE
Q 004270 427 VKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GD--IKV 500 (764)
Q Consensus 427 v~~~~~s~~g~~l~~g-~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g~--v~i 500 (764)
.....|+|||+.|+.. ..+| .|++||+.++...... .+...+....|+|+|+.|+..+.+ +. |.+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 3457899999988865 3444 5889999887654332 334567789999999988877654 44 555
Q ss_pred EECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
+|+.+++...............|+|||++++..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++.
T Consensus 316 ~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 316 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred EECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence 577776554333333455678999999999887653 36889999888643 34322 23456789999999999887
Q ss_pred CCc---EEEEEcCccceEEEEeeC-CceEEEEEcC
Q 004270 578 DGS---LRIWDVILARQIDAIHVD-VSITALSLSP 608 (764)
Q Consensus 578 dg~---i~iwd~~~~~~~~~~~~~-~~v~~l~~sp 608 (764)
++. +.++++ +|+....+..+ ..+...+|+|
T Consensus 394 ~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 394 QGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 764 677777 46666666543 4588889987
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=9.6e-14 Score=130.58 Aligned_cols=243 Identities=15% Similarity=0.175 Sum_probs=183.5
Q ss_pred CCCcceEEEEEeCC---eEEEEE-CCe-EEEEecCc--------eEEEecccccceEEEEEeCCEEEEEecCCcEEEEEc
Q 004270 54 QLPKKIRALASYRD---YTFAAY-GNH-IAVVKRAH--------QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120 (764)
Q Consensus 54 ~~~~~I~~~~~~~~---~~~~a~-g~~-i~vw~~~~--------~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~ 120 (764)
.-...|+.++|--+ ..+++. ++. +..+.... .+.+..+.+++|..+.-...+|++|..+|.+.+|..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 44566778877654 455565 443 33332211 122345567778888877788999999999999999
Q ss_pred cCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC--CcEEEEeCCCCeEEEEEcCC---------CCCeEEEEE
Q 004270 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE--GSLQLWNISTKKKLYEFKGW---------GSSISSCVS 189 (764)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~h---------~~~i~~~~~ 189 (764)
..+..+..+...+..+.+ ...+--+|... ..+++|+.. +.+.+||+...+.+.+-+.- .-.++.+.|
T Consensus 133 k~~d~hss~l~~la~g~g-~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPG-LYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred cCCccccccceeeecCCc-eeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 977765444444443322 22333333332 567779999 89999999998777765432 234567888
Q ss_pred cCC--CCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc
Q 004270 190 SPA--LDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA 266 (764)
Q Consensus 190 sp~--~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 266 (764)
-+. ...+|+++.-+.|++||.+.++ ++.++... ..+++++...|+|. ++++|..-|.+..||++.++.......+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCc-EEEEecccchhheecccCceeeccccCC
Confidence 887 7899999999999999999765 66777665 78999999999999 8999999999999999999998884448
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 267 h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
-.+.|+++..+|..++++++|-|+.+||+|+.+.
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 9999999999999999999999999999998874
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=5.1e-12 Score=115.94 Aligned_cols=238 Identities=18% Similarity=0.242 Sum_probs=158.4
Q ss_pred eEEEEEe-CCEEEEEecCCcEEEEEccCCcccccceeeEecC-CccccEEEEeCCCCCCEEEEEeCC------CcEEEEe
Q 004270 96 VNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWN 167 (764)
Q Consensus 96 v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~~~~d------g~i~iwd 167 (764)
..+++|+ ..-..++..|.-.+||+.+.-+.. .+-... .+....-.+.-..+ ..++|+.+ +.|.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~----~~r~~~~~G~~~veMLfR~N~--laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKES----ASRQFIDGGFKIVEMLFRSNY--LALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCchhhh----hhhccccCchhhhhHhhhhce--EEEecCCCCCCCCCceEEEEe
Confidence 3446773 333444445666999998764441 111111 12222222233332 23344433 4799999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc-CCceEEEEeccC-CCCEEEEEEeeCCCCEEEE-Ee
Q 004270 168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR-YDEELVTFTHSM-RGAVTALAFSSDGQPLLAS-GA 244 (764)
Q Consensus 168 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l~s-g~ 244 (764)
-...+++.++.- ..+|.++.++++ .|++.. .+.|.||... +.+.+..+.... .....+++-..+.. +||. |-
T Consensus 82 D~k~~~i~el~f-~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~ 156 (346)
T KOG2111|consen 82 DLKERCIIELSF-NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGF 156 (346)
T ss_pred cccCcEEEEEEe-ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCC
Confidence 777788888875 789999999986 455555 4789999988 455666665321 23343433333333 4443 44
Q ss_pred CCCcEEEEECCCcee--eeeeecccccCeeEEEEecCCCEEEEEcCCCc-EEEEEecCCCCCceeeEeccCCCCCCeeEE
Q 004270 245 SSGVISIWNLEKRRL--QSVIREAHDNAIISLHFFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~ 321 (764)
.-|.|.|-|+...+. ...+. +|.+.|.+++.+.+|..+||+|..|+ ||+||...++. ..-..+......|.+++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~--l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL--LQELRRGVDRADIYCIA 233 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE--eeeeecCCchheEEEEE
Confidence 679999999987766 35555 99999999999999999999999987 68997665532 11112223456899999
Q ss_pred EecCCCEEEEEeCCCcEEEEEeeccc
Q 004270 322 FYANGRHILSAGQDRAFRLFSVIQDQ 347 (764)
Q Consensus 322 ~~~~~~~l~s~~~dg~i~i~d~~~~~ 347 (764)
|+|++.+|++++..|++++|.++...
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99999999999999999999997654
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.2e-13 Score=142.00 Aligned_cols=178 Identities=14% Similarity=0.126 Sum_probs=122.9
Q ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (764)
..|.++|. .|+....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +... .+.+.+.+|+|||+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~-~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF-KGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC-CCCccceEECCCCC
Confidence 35777786 455555666778889999999999999887643 469999999887543 3222 45677899999998
Q ss_pred CEEEEEeCCCcEEEE--ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCC
Q 004270 238 PLLASGASSGVISIW--NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 238 ~~l~sg~~dg~i~iw--d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
.++++.+.+|...|| |+.++. ...+. .+........|+|||+.|+..+. ++...+|.++...+..+.+. . +.
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~--~g 327 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-F--TG 327 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-c--CC
Confidence 555567777776665 555444 33443 35555677899999998876654 57788888875544333332 1 22
Q ss_pred CCCeeEEEecCCCEEEEEeCCC---cEEEEEeecc
Q 004270 315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD 346 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~~ 346 (764)
.......|+|||++|+..+.++ .|.+||+.++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 2344678999999998777554 4777776544
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.9e-11 Score=115.04 Aligned_cols=276 Identities=14% Similarity=0.228 Sum_probs=190.6
Q ss_pred CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---CcEEEEEeecccccccccchhhhHHHhhcc
Q 004270 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (764)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 365 (764)
+.-|.+|++++..+....+.. ..+...++-++++|++++|.++..+ |.+..|.+....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~------------------ 75 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD------------------ 75 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC------------------
Confidence 567999999977765544433 3677889999999999999988654 556666654320
Q ss_pred chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-c
Q 004270 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-A 444 (764)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~ 444 (764)
+.+...+- ......+.+.++++++|++++++. .
T Consensus 76 ----------------------------------G~Lt~ln~------------~~~~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 76 ----------------------------------GRLTFLNR------------QTLPGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred ----------------------------------CeEEEeec------------cccCCCCCeEEEECCCCCEEEEEEcc
Confidence 11111110 001124448899999999988775 4
Q ss_pred CCcEEEEECcC-CcccceecCccccccccccCc----------EEEEEECCCCCEEEEEeC-CCeEEEEECCCCCeeee-
Q 004270 445 GGWIERFNLQS-GISRGSYLDMSERSNYAHNGE----------VVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSR- 511 (764)
Q Consensus 445 ~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~- 511 (764)
.|.|.++-++. |........ ..|.+. +....+.|++++|++... -..|.+|++..+++...
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~ 183 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQV------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD 183 (346)
T ss_pred CceEEEEEcccCCccccceee------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence 57999999966 443332211 123332 778889999999998873 34799999998765443
Q ss_pred ---EecCcceEEEEEeecCCEEEEEeC-CCeEEEEEccCC-eEEEEeec---------CCCCeeEEEEcCCCcEEEEEeC
Q 004270 512 ---WEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVAL-RMVRKFEG---------HTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 512 ---~~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~-~~~~~~~~---------h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
++.......+.|+|++++..+.++ +++|-+|..+.. ..+..++. -.....+|..+|||++|.++..
T Consensus 184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 344578899999999999888776 889999998873 22333322 1245778999999999997753
Q ss_pred -CCcEEEEEcCcc-ceEEEE---eeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEecccccCCC
Q 004270 578 -DGSLRIWDVILA-RQIDAI---HVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGD 635 (764)
Q Consensus 578 -dg~i~iwd~~~~-~~~~~~---~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~~ 635 (764)
...|.++.+... ..+..+ ..+.. .....|+++|++|++++.++..|.++..+..-...
T Consensus 264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 336888877642 323322 22333 78999999999999999999889999987655443
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=8.4e-12 Score=126.17 Aligned_cols=520 Identities=12% Similarity=0.118 Sum_probs=314.4
Q ss_pred CCcceEEEEEeCCeEEEEECCe---EEEEecCce-----------------EEEecccccceEEEEEe--CCEEEEEecC
Q 004270 55 LPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ-----------------VATWSRHSAKVNLLLLF--GEHILSIDID 112 (764)
Q Consensus 55 ~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~-----------------~~~~~~h~~~v~~l~~~--g~~l~s~~~d 112 (764)
......|+++..+.-|+|+|+. ++|.+.++. -+++.||.+.|.-+.++ .+.|-+.+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456789999999999999876 777653221 22488999999999994 5678888899
Q ss_pred CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC
Q 004270 113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA 192 (764)
Q Consensus 113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~ 192 (764)
|.|.||=+-.+.-....+. .-....+.++.+..+| .++.....||.|.+=.++ |..+.--.-.......+.|++|
T Consensus 93 GlIiVWmlykgsW~EEMiN--nRnKSvV~SmsWn~dG--~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMIN--NRNKSVVVSMSWNLDG--TKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred ceEEEEeeecccHHHHHhh--CcCccEEEEEEEcCCC--cEEEEEEccCCEEEEeec-cceecchhcchheccceeeccc
Confidence 9999999877654111110 1123344555666666 677777777776665543 2222211111223457899999
Q ss_pred CCEEEEEEcCCeEEEEEccCCc-------eEEEEec---cCCCCEEEEEEe--------eCCCCEEEEEeCCCcEEEEEC
Q 004270 193 LDVVAVGCSDGKIHVHNVRYDE-------ELVTFTH---SMRGAVTALAFS--------SDGQPLLASGASSGVISIWNL 254 (764)
Q Consensus 193 ~~~la~g~~dg~i~iwd~~~~~-------~~~~~~~---~~~~~v~~l~fs--------~d~~~~l~sg~~dg~i~iwd~ 254 (764)
.+.++.+-.+|.+++||.+..- +.....+ .....|..+.|. ||.. .|+++..+|.+.|-.-
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRS 246 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhh
Confidence 9999999999999999976321 1111111 112235556654 3555 8999999999988765
Q ss_pred CCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC---------cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270 255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (764)
Q Consensus 255 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~---------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (764)
++......+. ..-.+....|+++|..|+.+|.+. .|.++. .....+..++.....|++++|-..
T Consensus 247 eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 247 ENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred cCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecCCceeeeeEEcCC
Confidence 5554444443 235788999999999999998652 344442 122456666777888999999887
Q ss_pred CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee----eCCce
Q 004270 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH----MDTAQ 401 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 401 (764)
|-.++.+- |+.|.+=+++..-.-..+.. .++..- .....
T Consensus 320 gLriA~Av-dsfiyfanIRP~ykWgy~e~------------------------------------TvVy~y~~~e~p~y~ 362 (1189)
T KOG2041|consen 320 GLRIAIAV-DSFIYFANIRPEYKWGYIEE------------------------------------TVVYVYQKEELPQYG 362 (1189)
T ss_pred ceEEEEEe-cceEEEEeecccceEEEeee------------------------------------EEEEEEccCCCcceE
Confidence 76666544 77777766553321111100 011110 12345
Q ss_pred EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccc---ccccccCcEE
Q 004270 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGEVV 478 (764)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~~h~~~v~ 478 (764)
+..||..+........ ....++++..+.-.++.-..+|.+.-++.-......-+...... .+...-..|.
T Consensus 363 i~Fwdtk~nek~vK~V-------~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdir 435 (1189)
T KOG2041|consen 363 IMFWDTKTNEKTVKTV-------THFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIR 435 (1189)
T ss_pred EEEEecccChhhhhhh-------cceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceee
Confidence 6678877654321111 33455666666666666666776665532211111000000000 0001111122
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCeee-------------------------eE-------e-cCcceEEEEEee
Q 004270 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-------------------------RW-------E-VGCSLVKIVYHR 525 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-------------------------~~-------~-~~~~i~~~~~s~ 525 (764)
-.-..-++..++.++.+ .+.+|.+...+... .+ . ...+|.+++.+
T Consensus 436 P~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s- 513 (1189)
T KOG2041|consen 436 PKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS- 513 (1189)
T ss_pred eeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec-
Confidence 11122245566666664 56788754321110 00 1 12566666665
Q ss_pred cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC---ccceEEEE-eeCC-c
Q 004270 526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAI-HVDV-S 600 (764)
Q Consensus 526 ~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~---~~~~~~~~-~~~~-~ 600 (764)
.++|.++-..|.|.-|.+...-+..... -...|.+++.+-+...++.-..-|.+.+.|+. +|..+..+ +... .
T Consensus 514 -dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errD 591 (1189)
T KOG2041|consen 514 -DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRD 591 (1189)
T ss_pred -ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhh
Confidence 6889999999999999998876665554 34568999998888888888888888888886 46666544 3333 4
Q ss_pred eEEEEEcCCCCeEEEEEeCCCeEEEEecccccCCCC
Q 004270 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS 636 (764)
Q Consensus 601 v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~~~ 636 (764)
|+.+.|..|+..|..--... .+++++....-.|.+
T Consensus 592 VWd~~Wa~dNp~llAlmeKt-rmyifrgndpeEp~s 626 (1189)
T KOG2041|consen 592 VWDYEWAQDNPNLLALMEKT-RMYIFRGNDPEEPSS 626 (1189)
T ss_pred hhhhhhccCCchHHhhhhhc-eEEEecCcCcccccc
Confidence 99999999887665544444 488888765554443
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.7e-13 Score=142.11 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=123.4
Q ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (764)
..|.+||.. +...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ... .+...+++|+|||+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~-~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASF-RGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccC-CCCccCceECCCCC
Confidence 368999985 44555566677889999999999999987643 4699999988765432 222 44566889999998
Q ss_pred CEEEEEeCCC--cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCC
Q 004270 238 PLLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 238 ~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
.++++.+.+| .|++||+.+++... +. .+.......+|+||++.|+.++. ++...+|.++...+..+.+. .+.
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---~~g 335 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---FQG 335 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---cCC
Confidence 5555666555 59999998887543 33 45555678899999998887664 56656666554433323222 222
Q ss_pred CCCeeEEEecCCCEEEEEeCCC---cEEEEEeecc
Q 004270 315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD 346 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~~ 346 (764)
......+|+|||++++..+.++ .|.+||+.++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 3445789999999998765433 4777876543
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.5e-13 Score=123.80 Aligned_cols=148 Identities=20% Similarity=0.349 Sum_probs=111.4
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEECC-CCCeeeeEec--CcceEEEEEeecCCEEEEEe--CCCeEEEE
Q 004270 478 VGVACDSTNTLMISAGY----------HGDIKVWDFK-GRDLKSRWEV--GCSLVKIVYHRVNGLLATVA--DDLVIRLF 542 (764)
Q Consensus 478 ~~l~~~~~~~~l~s~~~----------dg~v~iwd~~-~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~--~d~~i~v~ 542 (764)
..+.|+++|++|+.-.. -|...+|.++ .......+.. ..+|.+++|+|+|+.+|+.. .+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45778888887765433 1335555553 2233444443 46799999999999876653 56799999
Q ss_pred EccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeC
Q 004270 543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 543 d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d 619 (764)
|++ ++.+..+. ...++.+.|||+|++|++++.+ |.|.+||+.+.+.+....+. .++.++|||||++|+++...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 997 66666664 4678899999999999998744 67999999998888887654 47899999999999999863
Q ss_pred -----CCeEEEEecc
Q 004270 620 -----QNGVYLWVNR 629 (764)
Q Consensus 620 -----~~~i~lW~~~ 629 (764)
.++++||+..
T Consensus 165 ~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ 179 (194)
T ss_pred cceeccccEEEEEec
Confidence 2369999975
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.57 E-value=2.2e-13 Score=125.94 Aligned_cols=336 Identities=15% Similarity=0.191 Sum_probs=221.2
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE-ccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN-VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd-~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
...++.++||.+.|+....-|...-+.+.+.|.+++||- ...++.-..+.+....+++++++.++.. .|+.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence 345677889999999999989888899999999999995 3455555555555578999999999988 89999999999
Q ss_pred EEEECCC----ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270 250 SIWNLEK----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (764)
Q Consensus 250 ~iwd~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (764)
.-+.+.. ....+... .|...+..+-|+-...++++.+.|..+.---.+.+......... ...+++.+.-.
T Consensus 93 tefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-----~~~t~~~~d~~ 166 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-----TPASALQFDAL 166 (404)
T ss_pred EEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-----ccCCCCceeeE
Confidence 9886643 33444444 89999999999988889999999887653322222211111100 11111111111
Q ss_pred CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (764)
+...|...|.+....+....
T Consensus 167 --~~fvGd~~gqvt~lr~~~~~---------------------------------------------------------- 186 (404)
T KOG1409|consen 167 --YAFVGDHSGQITMLKLEQNG---------------------------------------------------------- 186 (404)
T ss_pred --EEEecccccceEEEEEeecC----------------------------------------------------------
Confidence 33334344444443332211
Q ss_pred EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (764)
...+....+|...+++++|.+....+.+|..|..+.+||+.......... .+|.+.|..+...+-
T Consensus 187 --------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 187 --------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------QGHNDKVQALSYAQH 251 (404)
T ss_pred --------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee-------ccchhhhhhhhhhhh
Confidence 11122223667899999999999999999999999999998766655544 599999999998888
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeee------------------------------eEecC----cceEEEEEeecCCEEE
Q 004270 486 NTLMISAGYHGDIKVWDFKGRDLKS------------------------------RWEVG----CSLVKIVYHRVNGLLA 531 (764)
Q Consensus 486 ~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------~~~~~----~~i~~~~~s~~~~~la 531 (764)
-+.+++++.||.|.+|+.+...... ...++ +...+...+.......
T Consensus 252 t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p 331 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYP 331 (404)
T ss_pred heeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccc
Confidence 8999999999999999987542110 00011 1111111111122222
Q ss_pred EEeCCCeEEEEEccC-------CeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 532 TVADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 532 ~~~~d~~i~v~d~~~-------~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
+-+..-.+|+-|.-- ..++..+..-...|+.+.+..+-.+|+|+|.|..|+|||+..
T Consensus 332 ~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 332 TMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 222233444443211 122334433335699999998888999999999999999864
No 248
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.1e-12 Score=138.70 Aligned_cols=232 Identities=15% Similarity=0.132 Sum_probs=155.5
Q ss_pred cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC---CCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (764)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (764)
.|.++|.+.. ..+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.... +
T Consensus 183 ~l~~~d~dg~-----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l--------------- 241 (435)
T PRK05137 183 RLAIMDQDGA-----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V--------------- 241 (435)
T ss_pred EEEEECCCCC-----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e---------------
Confidence 5666655432 22334467788999999999999887763 4578888876543210 0
Q ss_pred hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 004270 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG 446 (764)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g 446 (764)
. .....+...+|+|||+.++.. +.+|
T Consensus 242 --------------------------------------------------~---~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 242 --------------------------------------------------G---NFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred --------------------------------------------------e---cCCCcccCcEECCCCCEEEEEEecCC
Confidence 0 112455678999999987644 4455
Q ss_pred --cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CC--eEEEEECCCCCeeeeEecCcceEEE
Q 004270 447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKI 521 (764)
Q Consensus 447 --~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~i~~~ 521 (764)
.|+++|+.++.... +. .+........|+|||+.++..+. +| .|.++|+.+++..........+...
T Consensus 269 ~~~Iy~~d~~~~~~~~-Lt--------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 269 NTDIYTMDLRSGTTTR-LT--------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred CceEEEEECCCCceEE-cc--------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 47778888776543 22 45555677899999998887763 33 6888898877665544444566778
Q ss_pred EEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC------CcEEEEEcCccceE
Q 004270 522 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD------GSLRIWDVILARQI 592 (764)
Q Consensus 522 ~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d------g~i~iwd~~~~~~~ 592 (764)
.|+|||+.|+....+ ..|.+||+.++.. +.+. +...+....|+|||++|+..+.+ ..+.++|+..+..
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~- 416 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE- 416 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence 999999999887653 3688889865543 3343 22357788999999998866543 2577888765544
Q ss_pred EEEeeCCceEEEEEcC
Q 004270 593 DAIHVDVSITALSLSP 608 (764)
Q Consensus 593 ~~~~~~~~v~~l~~sp 608 (764)
..+.....+...+|+|
T Consensus 417 ~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 417 REVPTPGDASDPAWSP 432 (435)
T ss_pred EEccCCCCccCcccCC
Confidence 4444444467778876
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.5e-12 Score=136.86 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=156.6
Q ss_pred CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-C--CcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (764)
Q Consensus 203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-d--g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~ 279 (764)
..|.++|.. +.....+..+ ...+.+.+|+|||+ .|+..+. + ..|.+||+.+++..... ...+.+....|+||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSS-PEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccC-CCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC
Confidence 457777764 4444444443 57899999999998 5555443 2 45999999988754332 24456678999999
Q ss_pred CCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhh
Q 004270 280 EPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHV 357 (764)
Q Consensus 280 ~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~ 357 (764)
|+.|+ +.+.++...+|.++...+. ...+..+........|+|||+.|+..+. ++...+|.+...
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~----------- 316 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS----------- 316 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----------
Confidence 98776 5677888889888765433 2333345555667889999988876553 345555543211
Q ss_pred hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (764)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (764)
T Consensus 317 -------------------------------------------------------------------------------- 316 (427)
T PRK02889 317 -------------------------------------------------------------------------------- 316 (427)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC---eEEEEECCCCCeeeeEec
Q 004270 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEV 514 (764)
Q Consensus 438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~ 514 (764)
++...... .+.......+|+|+|++++..+.++ .|.+||+.+++..... .
T Consensus 317 -----------------~g~~~~lt---------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~ 369 (427)
T PRK02889 317 -----------------GGAAQRVT---------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D 369 (427)
T ss_pred -----------------CCceEEEe---------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C
Confidence 00000000 0011122457899999888776554 6999999888755433 3
Q ss_pred CcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270 515 GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (764)
Q Consensus 515 ~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d 568 (764)
........|+|||+.|+.++.++ .+.+.++ +++..+.+..+.+.+...+|+|-
T Consensus 370 ~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 33456789999999998887654 4666676 46666677777788888899874
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=1e-11 Score=121.22 Aligned_cols=333 Identities=15% Similarity=0.209 Sum_probs=220.0
Q ss_pred EEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEE
Q 004270 206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285 (764)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 285 (764)
.+|+..+...-..+.. ..-++...+|||.|. +|++... ..|.+|.-.....+..+. | ..|..+.|+|++++|.+
T Consensus 15 ~f~~~~s~~~~~~~~~-~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFES-ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVT 88 (561)
T ss_pred EeecCccccccccccc-cCcchhheeecCcch-heehhhc-cceEEccccchhheeeee--c-CCceecccCcccceeee
Confidence 4555555544444443 367899999999999 7776654 469999988777555554 3 46999999999999998
Q ss_pred EcCC---------------CcEEEEEecCCCCCceeeEeccCCCCC--Ce-eEEEecCCCEEEEEeCCCcEEEEEeeccc
Q 004270 286 ASAD---------------NSIKMWIFDTTDGDPRLLRFRSGHSAP--PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (764)
Q Consensus 286 ~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~-~i~~~~~~~~l~s~~~dg~i~i~d~~~~~ 347 (764)
-+.. +.+.+||...+ .++..+.+-..+ .. -+.|+-+.++++-.. ...+.++++ ++.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDN 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCc
Confidence 6543 35889988766 566666655554 33 567777777666442 334888886 222
Q ss_pred ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCe
Q 004270 348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 427 (764)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 427 (764)
.. .... +.+ ....+
T Consensus 163 ~~-~~p~------------------------------------------------------------~~l-----r~~gi 176 (561)
T COG5354 163 IE-EHPF------------------------------------------------------------KNL-----RPVGI 176 (561)
T ss_pred cc-cCch------------------------------------------------------------hhc-----cccce
Confidence 11 0000 000 01455
Q ss_pred EEEEEccCCCE--EEE-----EecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-------
Q 004270 428 KACTISACGNF--AVL-----GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG------- 493 (764)
Q Consensus 428 ~~~~~s~~g~~--l~~-----g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~------- 493 (764)
....++|.|+. |+. +...+.+++|.+..+..+.+.. -....=..+.|.+.|++++.--
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--------lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--------LFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--------eEeecccEEEEecCCceEEEEEEEeeecc
Confidence 56666665432 221 3456688888887665554332 1122224567788887665321
Q ss_pred ----CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe--CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270 494 ----YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 494 ----~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~ 567 (764)
....+.++++....+.......++|...+|.|.++.+++.+ .+..+.++|++.. +. +......=+.+.|||
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp 325 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP 325 (561)
T ss_pred cceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC
Confidence 23568888888655555555579999999999998777654 6788999999866 33 333445567788999
Q ss_pred CCcEEEEEeCC---CcEEEEEcCccceEE-EEeeCCceEEEEEcCCCCeEEEEEe------CCCeEEEEecc
Q 004270 568 DGKWLLSSGMD---GSLRIWDVILARQID-AIHVDVSITALSLSPNMDVLATAHV------DQNGVYLWVNR 629 (764)
Q Consensus 568 dg~~l~s~s~d---g~i~iwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~lat~~~------d~~~i~lW~~~ 629 (764)
.++|++.++-| |.+-+||......+. .+. .....-+.|+|||+|+-++.. |. +|.||++-
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn-~i~l~~v~ 395 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDN-SIKLWDVY 395 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEee-cCCceEeeccCCceEEEecCCCcccccCc-ceEEEEec
Confidence 99999998865 689999988655444 333 334667789999999887763 33 69999984
No 251
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.7e-12 Score=137.36 Aligned_cols=175 Identities=13% Similarity=0.119 Sum_probs=121.5
Q ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (764)
..|.++|.. +.....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+... .+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCcccCcEECCCCC
Confidence 378899974 5555667778889999999999999988764 468999999888653 33332 56778999999998
Q ss_pred CEEEEEeCCCc--EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCC
Q 004270 238 PLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 238 ~~l~sg~~dg~--i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
.++++.+.++. |.+||+.+++... +. .+........|+|||+.|+..+. ++...+|.++...+..+.+. .+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~ 333 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGG 333 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCC
Confidence 55566666655 7788998876544 33 35566778999999998887663 44444444443333223222 234
Q ss_pred CCCeeEEEecCCCEEEEEeCCC---cEEEEEe
Q 004270 315 APPLCIRFYANGRHILSAGQDR---AFRLFSV 343 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~ 343 (764)
..+....|+|||+.|+..+.++ .+.+|++
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 4566788999999998776432 3555554
No 252
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=9.2e-13 Score=139.14 Aligned_cols=232 Identities=14% Similarity=0.049 Sum_probs=154.4
Q ss_pred cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---CcEEEEEeecccccccccchhhhHHHhhccch
Q 004270 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (764)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (764)
.|.+||.+.. . .+.+..+...+.+.+|+|||+.|+..+.+ ..|.+|++.++.....
T Consensus 185 ~l~i~D~~g~--~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---------------- 243 (433)
T PRK04922 185 ALQVADSDGY--N---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---------------- 243 (433)
T ss_pred EEEEECCCCC--C---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe----------------
Confidence 5777766433 1 22234567789999999999999987643 3577888754432110
Q ss_pred hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCC
Q 004270 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG 446 (764)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g 446 (764)
. .......+..|+|+|+.++.. +.+|
T Consensus 244 --------------------------------------------------~---~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 244 --------------------------------------------------A---SFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred --------------------------------------------------c---cCCCCccCceECCCCCEEEEEEeCCC
Confidence 0 011334467899999987654 4555
Q ss_pred --cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CCe--EEEEECCCCCeeeeEecCcceEEE
Q 004270 447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGD--IKVWDFKGRDLKSRWEVGCSLVKI 521 (764)
Q Consensus 447 --~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~--v~iwd~~~~~~~~~~~~~~~i~~~ 521 (764)
.|++||+.++.... +. .+.......+|+|+|+.++.++. +|. |.++++.+++..............
T Consensus 271 ~~~Iy~~d~~~g~~~~-lt--------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~ 341 (433)
T PRK04922 271 NPEIYVMDLGSRQLTR-LT--------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA 341 (433)
T ss_pred CceEEEEECCCCCeEE-Cc--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 69999998876543 21 44445567899999998887763 444 667777776654433333445578
Q ss_pred EEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEE
Q 004270 522 VYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAI 595 (764)
Q Consensus 522 ~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~ 595 (764)
+|+|||++++..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++. |.....+
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l 418 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL 418 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence 9999999998876543 6999999888754 443 22345678999999998877653 468888875 4555555
Q ss_pred eeC-CceEEEEEcC
Q 004270 596 HVD-VSITALSLSP 608 (764)
Q Consensus 596 ~~~-~~v~~l~~sp 608 (764)
..+ ..+...+|+|
T Consensus 419 ~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 VSADGEVREPAWSP 432 (433)
T ss_pred ccCCCCCCCCccCC
Confidence 443 4577788876
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=8.8e-13 Score=121.16 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=117.5
Q ss_pred CeEEEEEccCCCEEEEEec----------CCcEEEEECcCC-cccceecCccccccccccCcEEEEEECCCCCEEEEE--
Q 004270 426 AVKACTISACGNFAVLGTA----------GGWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-- 492 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~----------~g~i~i~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-- 492 (764)
.-..+.|+++|++|++-.. -|...+|.+... .....+. ....+.|.+++|+|+|+.++..
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-------l~~~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-------LKKEGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-------ccCCCceEEEEECcCCCEEEEEEc
Confidence 3456789999998876544 134555555322 2222222 1345679999999999987654
Q ss_pred eCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeC---CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC
Q 004270 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG 569 (764)
Q Consensus 493 ~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~---d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg 569 (764)
..++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++. .|.+.+||.++.+.+..+. |. .++.++|||||
T Consensus 80 ~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG 155 (194)
T PF08662_consen 80 SMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG 155 (194)
T ss_pred cCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence 367799999997 55555554 467789999999999999874 4679999999999888776 33 47899999999
Q ss_pred cEEEEEeC------CCcEEEEEcCccceEEEEe
Q 004270 570 KWLLSSGM------DGSLRIWDVILARQIDAIH 596 (764)
Q Consensus 570 ~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 596 (764)
++|++++. |..++||+.. |+++....
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99998874 7889999985 77776544
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.54 E-value=1e-10 Score=115.54 Aligned_cols=279 Identities=9% Similarity=0.002 Sum_probs=179.6
Q ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc----------CCeEEEEEccCCceEEEEeccCC------
Q 004270 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS----------DGKIHVHNVRYDEELVTFTHSMR------ 224 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~----------dg~i~iwd~~~~~~~~~~~~~~~------ 224 (764)
++|.+.|..+++.+..+..-..+- .+ +|||++.|+++.. +..|.+||..+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999999999887543333 34 9999998888765 68999999999999998885421
Q ss_pred CCEEEEEEeeCCCCEEEEEe-C-CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC
Q 004270 225 GAVTALAFSSDGQPLLASGA-S-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~-~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 302 (764)
.....++++|||+ +|++.. . +..|.+.|+.+++.+..+.. .+...-...+++. .+ +-+.||......++....
T Consensus 105 ~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCc
Confidence 1234789999999 555444 3 79999999999999998872 2222222222222 11 223455554444333221
Q ss_pred Cceee--EeccCCCCCCe-eEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeE
Q 004270 303 DPRLL--RFRSGHSAPPL-CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (764)
Q Consensus 303 ~~~~~--~~~~~h~~~v~-~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (764)
.... ..+.+...++. .-.|.+ +|+++..... |+|.+.|+.........
T Consensus 180 -~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-------------------------- 231 (352)
T TIGR02658 180 -PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-------------------------- 231 (352)
T ss_pred -eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------------------------
Confidence 0110 01111000000 004566 7877777666 99999996543321110
Q ss_pred eeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe----------cCCcE
Q 004270 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGWI 448 (764)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----------~~g~i 448 (764)
.|..-+..... ..-.+....-++++++|+.+++.. ..+.|
T Consensus 232 -------------------------~~~~~~~~~~~-----~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 232 -------------------------AIEAFTEAEKA-----DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred -------------------------eeeeccccccc-----cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence 01110000000 001124444599999999998853 22479
Q ss_pred EEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEe-CCCeEEEEECCCCCeeeeEe
Q 004270 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRWE 513 (764)
Q Consensus 449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~~ 513 (764)
.++|..+++....+. -...+.+++++||++ +|++.. .++.|.+.|..+++.+..+.
T Consensus 282 ~ViD~~t~kvi~~i~---------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 282 FVVDAKTGKRLRKIE---------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEECCCCeEEEEEe---------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 999999999988874 345789999999999 777666 67889999999999988873
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=9.2e-12 Score=122.47 Aligned_cols=327 Identities=11% Similarity=0.110 Sum_probs=205.2
Q ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (764)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~s 242 (764)
...||.........-....-.-+-+.|||.|.||++-...| |.+|--.+-..++.|.+. .|.-+.|||..+ +|++
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~Ek-YLVT 266 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP---GVQFIDFSPNEK-YLVT 266 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC---CceeeecCCccc-eEEE
Confidence 45677544322211111223346789999999999988765 889987776777777653 589999999999 7887
Q ss_pred EeC-----------CCcEEEEECCCceeeeeeecc-cccC-eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270 243 GAS-----------SGVISIWNLEKRRLQSVIREA-HDNA-IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 243 g~~-----------dg~i~iwd~~~~~~~~~~~~~-h~~~-v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (764)
-+. ...++|||+.+|.....+... .... -.-..||.|+++++--.. ++|.|++...- .++..
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~ 341 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDK 341 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeecc
Confidence 652 257999999999888877621 1112 234689999999998776 57889854332 33333
Q ss_pred ccCCCCCCeeEEEecCCCEEEEEeCC-----CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270 310 RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (764)
..-.-..|....|+|.++.|+--... ..+.+..+.+.+.++.
T Consensus 342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt--------------------------------- 388 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT--------------------------------- 388 (698)
T ss_pred cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee---------------------------------
Confidence 33345678888999987766643211 1122222222211111
Q ss_pred ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE----------ecCCcEEEEECc
Q 004270 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG----------TAGGWIERFNLQ 454 (764)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g----------~~~g~i~i~~~~ 454 (764)
..+++ -.-..+.|-.+|.+|++- +.-..+.+|.+.
T Consensus 389 -----------------~nlfn------------------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 389 -----------------KNLFN------------------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred -----------------cccee------------------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 00111 111234455566666543 222255666665
Q ss_pred CCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC---CCeEEEEECCC-C---CeeeeEecCcceEEEEEeecC
Q 004270 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKG-R---DLKSRWEVGCSLVKIVYHRVN 527 (764)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~-~---~~~~~~~~~~~i~~~~~s~~~ 527 (764)
......... .-...|...+|.|.|..+++-+. ..++.+|.+.+ . +++..+.. ...+.+.|+|.|
T Consensus 434 eKdIpve~v--------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG 504 (698)
T KOG2314|consen 434 EKDIPVEVV--------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKG 504 (698)
T ss_pred ccCCCceee--------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCC
Confidence 544332221 45678899999999988776553 35788998873 2 22333322 566889999999
Q ss_pred CEEEEE---eCCCeEEEEEccCCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeC
Q 004270 528 GLLATV---ADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 528 ~~la~~---~~d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
++++++ +..|.+.++|..-..+...-. .| ...+.+.|.|.|||++|++.
T Consensus 505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 505 RFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeee
Confidence 998876 457899999987433322222 24 34678999999999999875
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=2.8e-10 Score=112.42 Aligned_cols=270 Identities=13% Similarity=0.108 Sum_probs=176.4
Q ss_pred CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe---------CCCcEEEEECCCceeeeeeeccc------
Q 004270 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAH------ 267 (764)
Q Consensus 203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~h------ 267 (764)
++|.+.|..+++.+..+..+. .+ ..+ ++|||+.+.++.+ .+..|.+||..+.+.+..+..+-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 899999999999999998762 22 235 9999995555556 68899999999999998887321
Q ss_pred ccCeeEEEEecCCCEEEEEc-C-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE--------eCCCc
Q 004270 268 DNAIISLHFFANEPVLMSAS-A-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA--------GQDRA 337 (764)
Q Consensus 268 ~~~v~~l~~~~~~~~l~s~~-~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~--------~~dg~ 337 (764)
......++++|||++|+... . ++.|.+.|+... +.+....- |++..++.. +.||.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~----kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK----AFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGS 168 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCC----cEEEEEeC-----------CCCcEEEEecCCccEEEeecCc
Confidence 12334789999999888766 3 789999998776 44443322 233333322 33444
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
.....+........- ...+++... ...
T Consensus 169 ~~~v~~d~~g~~~~~------------------------------------------------~~~vf~~~~----~~v- 195 (352)
T TIGR02658 169 LAKVGYGTKGNPKIK------------------------------------------------PTEVFHPED----EYL- 195 (352)
T ss_pred eEEEEecCCCceEEe------------------------------------------------eeeeecCCc----ccc-
Confidence 443333221110000 000000000 000
Q ss_pred cCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECcCCcc-----cceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 418 RPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGIS-----RGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
...+ .+++ +|+++.+... |.|.+.|+..... ...+.. ......-..+.+..++++++++.++.
T Consensus 196 -----~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 196 -----INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred -----ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-cccccccCCCcceeEEEcCCCCEEEE
Confidence 0011 3455 8888888877 9999999644322 211110 00000113344555999999988887
Q ss_pred Ee----------CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCC-EEEEEe-CCCeEEEEEccCCeEEEEee
Q 004270 492 AG----------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFDVVALRMVRKFE 554 (764)
Q Consensus 492 ~~----------~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~d~~i~v~d~~~~~~~~~~~ 554 (764)
.. ..+.|.++|..+++.+..+.....+..++++||++ +|++.. .++.|.++|..+++.++++.
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 43 12579999999999999999999999999999999 777666 57889999999999998873
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=2e-12 Score=119.72 Aligned_cols=248 Identities=18% Similarity=0.278 Sum_probs=182.0
Q ss_pred EEEecccccceEEEE--EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270 86 VATWSRHSAKVNLLL--LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~--~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (764)
+..+.||.+.|.+.. +-...+++++.|.+++||--.+.......+... -........+++.. .+|++|-..|++
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e~--~~L~vg~~ngtv 92 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSES--RRLYVGQDNGTV 92 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeeccc--eEEEEEEecceE
Confidence 344889988888765 457789999999999999654433322222211 23334455577777 789999999999
Q ss_pred EEEeCC----CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270 164 QLWNIS----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 164 ~iwd~~----~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (764)
.-+.+. ....++....|...|..+.|+....++++.+.|..+.-.-.+.+..+..+... .+.+++.|.-. +
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~---~ 167 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL---Y 167 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE---E
Confidence 888653 34455667789999999999999999999999988766666666655544332 22223333222 4
Q ss_pred EEEEeCCCcEEEEECC--CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270 240 LASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
...|...|.|.+-.+. .-.++.++. +|.+.+.+++|.+....|+++..|..+.+||+-...+ ....+.+|...|
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~kV 243 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHNDKV 243 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccchhhh
Confidence 4556666666655443 345666676 9999999999999999999999999999999876653 445567999999
Q ss_pred eeEEEecCCCEEEEEeCCCcEEEEEeecc
Q 004270 318 LCIRFYANGRHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg~i~i~d~~~~ 346 (764)
..+.+.+--+.+++++.||.|.+|+....
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999988889999999999999998654
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.9e-11 Score=117.44 Aligned_cols=337 Identities=13% Similarity=0.163 Sum_probs=220.4
Q ss_pred EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE
Q 004270 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 284 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 284 (764)
...||.........-... +-.-+-+.|||.|. +|++--..| |.+|--++-..++.+. |. .|.-+.|||+.++|+
T Consensus 192 svfwN~~~n~p~~ie~Re-nWTetyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLV 265 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERE-NWTETYVRWSPKGT-YLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLV 265 (698)
T ss_pred EEEccccCCchhhhhhhh-cceeeeEEecCCce-EEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCccceEE
Confidence 556776543222111111 23457899999999 888876554 8999876666666664 65 589999999999999
Q ss_pred EEcC-----------CCcEEEEEecCCCCCceeeEeccC---CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 285 SASA-----------DNSIKMWIFDTTDGDPRLLRFRSG---HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 285 s~~~-----------d~~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
|=+. ...++|||+.++. +.+.+.. ....-.-..|+.|+++++--..++ |.+|+......
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~----lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~l-- 338 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGL----LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFML-- 338 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccc----hhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecCceee--
Confidence 8663 2579999998873 3333222 222233468999999999877654 88888643211
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
.+... -....|...
T Consensus 339 ------------------------------------------------------ld~Ks------------lki~gIr~F 352 (698)
T KOG2314|consen 339 ------------------------------------------------------LDKKS------------LKISGIRDF 352 (698)
T ss_pred ------------------------------------------------------ecccc------------cCCccccCc
Confidence 11111 112667778
Q ss_pred EEccCCCEEEEEecC-----CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe----------CC
Q 004270 431 TISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG----------YH 495 (764)
Q Consensus 431 ~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d 495 (764)
.|+|.++.|+.=+.. ..+.+..+.+++.++.-. -|.-.=..+.|-.+|.+|+.-- .-
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------ceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 888888877754322 356667777766665543 2333334456667777776432 11
Q ss_pred CeEEEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccC----CeEEEEeecCCCCeeEEEEcC
Q 004270 496 GDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVA----LRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 496 g~v~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~----~~~~~~~~~h~~~i~~l~~s~ 567 (764)
..+.|+.++.. -++........+...+|-|.|+.+++-+.+ .++.+|.+++ .+++..+.. ...+.+.|+|
T Consensus 425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP 502 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP 502 (698)
T ss_pred eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC
Confidence 23556666544 345566677899999999999988876543 5788888773 233444443 4567899999
Q ss_pred CCcEEEEEe---CCCcEEEEEcCccceEE-EEeeCCceEEEEEcCCCCeEEEEEeCC-----CeEEEEeccc
Q 004270 568 DGKWLLSSG---MDGSLRIWDVILARQID-AIHVDVSITALSLSPNMDVLATAHVDQ-----NGVYLWVNRC 630 (764)
Q Consensus 568 dg~~l~s~s---~dg~i~iwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~lat~~~d~-----~~i~lW~~~~ 630 (764)
.|++++.+. ..|.+.++|..-..+.. ....|...+.+.|.|.|+|++|++.-. .+-++|+++.
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 999998764 57899999988533322 223355688999999999999988521 2588888754
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.49 E-value=2.3e-08 Score=113.13 Aligned_cols=481 Identities=10% Similarity=0.081 Sum_probs=273.0
Q ss_pred cceEEe-cCCeEEEEEEeCCeEEEE----ecCCCeEEEecCCCCcceEEEEEeCCeEEE--EECCe-EEEE----e----
Q 004270 18 PFSVQR-LGTENFVTVSVGKAFHIY----NCAKLNLVLVGPQLPKKIRALASYRDYTFA--AYGNH-IAVV----K---- 81 (764)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~~~~i~iw----d~~~~~~~~~~~~~~~~I~~~~~~~~~~~~--a~g~~-i~vw----~---- 81 (764)
..++.+ .+.+.++++..+|-|.+. |......--++ .....|.|+++|||..++ ++|.. +.+- +
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E 156 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG-SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISE 156 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE-EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEE
Confidence 344444 567788888889999999 66665555554 357899999999995554 44543 3332 1
Q ss_pred -------cC----------ceEEEecc------------------------cccceEEEEE--eCCEEEEEec---C---
Q 004270 82 -------RA----------HQVATWSR------------------------HSAKVNLLLL--FGEHILSIDI---D--- 112 (764)
Q Consensus 82 -------~~----------~~~~~~~~------------------------h~~~v~~l~~--~g~~l~s~~~---d--- 112 (764)
.+ ++.-.++| +...-..|+| ||.++|+.+. .
T Consensus 157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~ 236 (928)
T PF04762_consen 157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR 236 (928)
T ss_pred eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence 01 11011111 2223345666 8999988775 3
Q ss_pred CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEc----CCCCCeE
Q 004270 113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ---EGSLQLWNISTKKKLYEFK----GWGSSIS 185 (764)
Q Consensus 113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~----~h~~~i~ 185 (764)
..++||+-+ +.+ ..+-+.-.+....++|.|.| +.|++... ...|.+|. ++|-....|. .....|.
T Consensus 237 R~iRVy~Re-G~L----~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 237 RVIRVYSRE-GEL----QSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred eEEEEECCC-ceE----EeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence 359999987 444 22222234455677899999 78887654 34566776 4554444443 3467899
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004270 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 263 (764)
.+.|++++..||+...|. |.+|-..+.. ..+.+.......+..+.|+|.....|...+.+|.+..+++.-...
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~---- 383 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS---- 383 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE----
Confidence 999999999999988665 9999887665 233333332345666999998876788888778887776421111
Q ss_pred ecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 264 ~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
+... ..|+..-.+..-....+++-.+....-.+..-...-....+|..++|++++..+++-..||.+.+|..
T Consensus 384 ---~s~~-----~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 384 ---RSPG-----SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred ---ecCC-----CCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 1100 01111111211122345555555443222222222245678999999999888999999999999986
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
........ .......... .. ..........
T Consensus 456 ~~~~~~~~-~~~~~~~~~~--------------------------------------------~~-----~~~~~~~~~~ 485 (928)
T PF04762_consen 456 DLKNMWSV-KPPKLLSSIS--------------------------------------------LD-----SMDISDSELP 485 (928)
T ss_pred cCCCcccc-cCcchhhhcc--------------------------------------------cc-----cccccccccc
Confidence 54322110 0000000000 00 0000000112
Q ss_pred CCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270 424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 500 (764)
...+..++|..+...+++...+ ..+.+++............ ...-.+.+..+...+....++.-..+|.+..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVES-----STEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEE-----EeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 3567788888877777666654 5777887743332111110 0123344555555555554666677898886
Q ss_pred EECCCCCee-eeEecCcceEEEEEeecCC--EEEEE-eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270 501 WDFKGRDLK-SRWEVGCSLVKIVYHRVNG--LLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 501 wd~~~~~~~-~~~~~~~~i~~~~~s~~~~--~la~~-~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s 576 (764)
.+....... ..+....+-..+....+.. .++.| +..|.+++ .++.+ ...+++++++ +.+|+...
T Consensus 561 ~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l------a~~~tSF~v~--~~~Ll~TT 628 (928)
T PF04762_consen 561 LSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL------ASNCTSFAVT--DSFLLFTT 628 (928)
T ss_pred eecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE------ecCCceEEEE--cCEEEEEe
Confidence 665543222 1222223333333333333 24444 33444443 22222 2567887775 45777777
Q ss_pred CCCcEEEEEcC
Q 004270 577 MDGSLRIWDVI 587 (764)
Q Consensus 577 ~dg~i~iwd~~ 587 (764)
....+++.++.
T Consensus 629 ~~h~l~fv~L~ 639 (928)
T PF04762_consen 629 TQHTLKFVHLN 639 (928)
T ss_pred cCceEEEEECc
Confidence 78889999988
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.9e-10 Score=116.59 Aligned_cols=490 Identities=12% Similarity=0.130 Sum_probs=296.8
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCe---------------EEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecCce
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLN---------------LVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ 85 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~---------------~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~~~ 85 (764)
....++++++.||-++|..+.+.. +-.+..||.+.|.-+.+..+..-+.+.+. |.||-.-+.
T Consensus 24 ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg 103 (1189)
T KOG2041|consen 24 KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG 103 (1189)
T ss_pred ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence 468899999999999999776421 11234689999999999988777666444 999975332
Q ss_pred --E--EEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC
Q 004270 86 --V--ATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ 159 (764)
Q Consensus 86 --~--~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~ 159 (764)
. ..-...++.|.++++ ||..++.+-+||.|.|=.++........+ .......+.++++. ..++.+-.
T Consensus 104 sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL-----kg~~l~hv~ws~D~--~~~Lf~~a 176 (1189)
T KOG2041|consen 104 SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL-----KGQLLAHVLWSEDL--EQALFKKA 176 (1189)
T ss_pred cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc-----chheccceeecccH--HHHHhhhc
Confidence 1 112335667888887 79999999999998887777665422111 22233467889988 67888888
Q ss_pred CCcEEEEeCCCC-------eE-E---EEEcCCCCCeEEEEEc--------CCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270 160 EGSLQLWNISTK-------KK-L---YEFKGWGSSISSCVSS--------PALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 160 dg~i~iwd~~~~-------~~-~---~~~~~h~~~i~~~~~s--------p~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
+|.+.+||.... .+ + ..+......|-.+.|. |+...||++..+|.+.|..-.++.....+.
T Consensus 177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d 256 (1189)
T KOG2041|consen 177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD 256 (1189)
T ss_pred CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence 899999986432 11 1 1122223345555553 577899999999999998877766655555
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCC---------CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASS---------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 291 (764)
.+ -.+..+.|+++|. +|++++.+ +.|.++. .-|+.+.+++ .....|++++|-..|-.++.+ .|+.
T Consensus 257 tg--m~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk-vpg~~It~lsWEg~gLriA~A-vdsf 330 (1189)
T KOG2041|consen 257 TG--MKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK-VPGSCITGLSWEGTGLRIAIA-VDSF 330 (1189)
T ss_pred cc--cEeecceecCCCc-EEEEccCcccccCccccceEEEec-cchhheEEEe-cCCceeeeeEEcCCceEEEEE-ecce
Confidence 43 5789999999999 88888743 2455555 3567777777 677889999998777655554 3566
Q ss_pred EEEEEecCCCC----CceeeEeccCCCCCCeeEEEe---------------------cCCCEEEEEeCCCcEEEEEeecc
Q 004270 292 IKMWIFDTTDG----DPRLLRFRSGHSAPPLCIRFY---------------------ANGRHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 292 i~vw~~~~~~~----~~~~~~~~~~h~~~v~~i~~~---------------------~~~~~l~s~~~dg~i~i~d~~~~ 346 (764)
|.+=+++..-. ....+....+...+-.++.|- .+--.|+.-..|+.+.-++.-.
T Consensus 331 iyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le- 409 (1189)
T KOG2041|consen 331 IYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLE- 409 (1189)
T ss_pred EEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhh-
Confidence 66554433210 001122222222333333332 2211122222222221110000
Q ss_pred cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCC
Q 004270 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 426 (764)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 426 (764)
. .+.++..-+-+ .+-.+....-..
T Consensus 410 -------------------------------------~--------------~~~~~~l~LCN-----SIGT~lD~kytd 433 (1189)
T KOG2041|consen 410 -------------------------------------N--------------RSRVYFLQLCN-----SIGTSLDYKYTD 433 (1189)
T ss_pred -------------------------------------c--------------ccceEEEeeec-----ccCCcCCCCcce
Confidence 0 00000000000 000000011122
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC------------------------ccccccccccCcEEEEEE
Q 004270 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD------------------------MSERSNYAHNGEVVGVAC 482 (764)
Q Consensus 427 v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~------------------------~~~~~~~~h~~~v~~l~~ 482 (764)
|.-.-..-++.++++++.+ .+.+|.....+....+.. .......+..++|.+++.
T Consensus 434 irP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~ 512 (1189)
T KOG2041|consen 434 IRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCI 512 (1189)
T ss_pred eeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeee
Confidence 2222222344555555444 455555432211111100 001123466778888887
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc---CCeEEE-EeecCCC
Q 004270 483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV---ALRMVR-KFEGHTD 558 (764)
Q Consensus 483 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~---~~~~~~-~~~~h~~ 558 (764)
+ .++++.+-..|.|.-|.+.+..+...+.....+.++.++-+...+|+-.--|.+.+.|+. ++..+. -++....
T Consensus 513 s--dk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~err 590 (1189)
T KOG2041|consen 513 S--DKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERR 590 (1189)
T ss_pred c--ceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhh
Confidence 6 568889999999999999999999988888999999999999999998888899888876 333333 4444567
Q ss_pred CeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 559 RITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
.|.++.|..|+..|+.--+-..+.|++-
T Consensus 591 DVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 591 DVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred hhhhhhhccCCchHHhhhhhceEEEecC
Confidence 7999999988876665444455666653
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.7e-09 Score=102.12 Aligned_cols=302 Identities=13% Similarity=0.150 Sum_probs=201.1
Q ss_pred CCcEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcC---CCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270 246 SGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (764)
Q Consensus 246 dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (764)
+.-|.+|++.+. +........+.+.++-|+|+|+++.|.++.. +|.|..|.++..++....+........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998733 3222222357788999999999999888765 47899999988767666666555566677999
Q ss_pred EEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270 321 RFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (764)
Q Consensus 321 ~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (764)
+++++|++++++.. -|.|.++-+..........+. ... .+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~------------------------~~h--------------~g- 135 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV------------------------VKH--------------TG- 135 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceee------------------------eec--------------CC-
Confidence 99999999998864 578888888654333222110 000 00
Q ss_pred ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECcCCcccceecCccccccccccCcEE
Q 004270 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
.+.+ .+.....+....++|+++++++..-. -.|.+|++..|......... ......-+
T Consensus 136 ------------~~p~----~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-----v~~G~GPR 194 (346)
T COG2706 136 ------------SGPH----ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-----VKPGAGPR 194 (346)
T ss_pred ------------CCCC----ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-----cCCCCCcc
Confidence 0000 11122447888999999999887653 48999999977665433210 13445678
Q ss_pred EEEECCCCCEEEEEe-CCCeEEEEECCCC-CeeeeE----------ecCcceEEEEEeecCCEEEEEeC-CCeEEEEEcc
Q 004270 479 GVACDSTNTLMISAG-YHGDIKVWDFKGR-DLKSRW----------EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV 545 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~-~dg~v~iwd~~~~-~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~ 545 (764)
.|+|+|++++..... .+++|.+|.++.. ..+..+ ........+.+++||++|.++.. ...|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999999999887665 6899999999874 222222 22366788999999999988754 3478888765
Q ss_pred C--CeE--EEEeecCCCCeeEEEEcCCCcEEEEEeCC-CcEEEEEcC--ccceEEEEee--CCceEEEEEc
Q 004270 546 A--LRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI--LARQIDAIHV--DVSITALSLS 607 (764)
Q Consensus 546 ~--~~~--~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-g~i~iwd~~--~~~~~~~~~~--~~~v~~l~~s 607 (764)
. +++ +.....+...-.+..|+++|++|+++..+ ..|.+|.+. +|++-..... -....|+.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 4 332 22223344446889999999999999865 468888664 5655443321 1225566664
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=2.4e-11 Score=121.26 Aligned_cols=201 Identities=17% Similarity=0.238 Sum_probs=154.9
Q ss_pred CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEE-------------------EeCCCCCCEEEEEeCCCcE
Q 004270 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI-------------------MHPDTYLNKVIVGSQEGSL 163 (764)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~p~~~~~~l~~~~~dg~i 163 (764)
+.++|..+.||.+++||...++............+..+.... .+.+. ..++.|...|.|
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t--~~lvlgt~~g~v 82 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT--SMLVLGTPQGSV 82 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc--eEEEeecCCccE
Confidence 467788888888888888887763321111111111111110 12222 468889999999
Q ss_pred EEEeCCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270 164 QLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~--~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~ 241 (764)
.+|++..|+..+.+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+... +..+.+++.+|||. +++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCCCC-EEE
Confidence 999999999988885 79999999999999999999999999999999999999988877 77899999999998 888
Q ss_pred EEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC-----CCEEEE-EcCCCcEEEEEecCCCCCceeeEec
Q 004270 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-----EPVLMS-ASADNSIKMWIFDTTDGDPRLLRFR 310 (764)
Q Consensus 242 sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~l~s-~~~d~~i~vw~~~~~~~~~~~~~~~ 310 (764)
+++ +.|++||+++++.+..+. +|.++|.+++|..+ |.++++ ...+.-+.+|-.+...........+
T Consensus 161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl 232 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSL 232 (541)
T ss_pred ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheee
Confidence 876 789999999999999999 99999999999877 555554 4456778899877654433333333
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=1.9e-11 Score=113.14 Aligned_cols=292 Identities=12% Similarity=0.164 Sum_probs=187.0
Q ss_pred cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC-CCceeeEeccCCC------------CCCeeEEEecCC--CEEEE
Q 004270 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYANG--RHILS 331 (764)
Q Consensus 267 h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~~--~~l~s 331 (764)
...-|.++.|...|.+|++|..+|.|.++.-+... +.......+..|. ..|..++|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 44578899999999999999999999998644332 2333444444443 468889999844 56788
Q ss_pred EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (764)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (764)
.+.|.++++|.+.......+-.. ...+. -......+++|-+...+. .+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~--~~~~~--~~~~~~~lr~p~~~~~~~----------~v------------------ 151 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYN--LPEEG--PPGTITSLRLPVEGRHDL----------EV------------------ 151 (433)
T ss_pred ecCCcceeeeeeecccccccccc--ccccC--CCCccceeeceeeccccc----------ee------------------
Confidence 88999999999875433221000 00000 000000111111100000 00
Q ss_pred ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEE
Q 004270 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMI 490 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~ 490 (764)
...........|...+.++.+..|+..++++ .|=.|.+|++.-......+....+..+..-..-|++..|+|. ...++
T Consensus 152 ea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~ 230 (433)
T KOG1354|consen 152 EASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFV 230 (433)
T ss_pred eeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEE
Confidence 0011111223567889999999999988876 567899999875544444433333222233445788889995 46778
Q ss_pred EEeCCCeEEEEECCCCCeee----eEe---c----------CcceEEEEEeecCCEEEEEeCCCeEEEEEc-cCCeEEEE
Q 004270 491 SAGYHGDIKVWDFKGRDLKS----RWE---V----------GCSLVKIVYHRVNGLLATVADDLVIRLFDV-VALRMVRK 552 (764)
Q Consensus 491 s~~~dg~v~iwd~~~~~~~~----~~~---~----------~~~i~~~~~s~~~~~la~~~~d~~i~v~d~-~~~~~~~~ 552 (764)
-.+..|+|++-|++...+.. .++ . -..|..+.|+++|+++++-. --+|++||+ ...+++.+
T Consensus 231 YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 231 YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVET 309 (433)
T ss_pred EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceE
Confidence 88888999999998432211 111 0 15688899999999998753 368999999 55677777
Q ss_pred eecCCC------------Ce---eEEEEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270 553 FEGHTD------------RI---TDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (764)
Q Consensus 553 ~~~h~~------------~i---~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~ 592 (764)
++-|.. .| ..++||.++.+++||+....++++++..|...
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 766642 23 35789999999999999999999998776543
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=8.4e-11 Score=124.04 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=113.4
Q ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.|.++|..... .+.+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +... .+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-PGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-CCCcCCeeECCCCCE
Confidence 57777865443 34455567788999999999999876543 368899998876533 2221 344567899999995
Q ss_pred EEEEEeCCCc--EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCC
Q 004270 239 LLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (764)
Q Consensus 239 ~l~sg~~dg~--i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (764)
++++.+.+|. |.++|+.+++.... . .+........|+||++.++..+. ++...+|.++...+..+.+. ..+ .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~l-t-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g--~ 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRI-T-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEG--E 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEEC-c-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCC--C
Confidence 5556666665 88889888765443 3 35556678899999997766553 56666776665444333332 122 2
Q ss_pred CCeeEEEecCCCEEEEEeC-CCcEEEE
Q 004270 316 PPLCIRFYANGRHILSAGQ-DRAFRLF 341 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~-dg~i~i~ 341 (764)
.....+|+|||++|+..+. ++...+|
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 2345789999999887654 3434443
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=3.6e-10 Score=117.94 Aligned_cols=300 Identities=12% Similarity=0.092 Sum_probs=187.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
+++++++.+|.|..+|..+|+.+..++.........+ .++..+++++.+|.+..+|..+|+.+.+.... +.+.+..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p 141 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPP 141 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCC
Confidence 5799999999999999999999988765443222222 24678888999999999999999998877653 3333222
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe-----eEEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-----ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 306 (764)
...++ .++.++.+|.|..||.++|+.+.... ...... .+.... + ..++.+..++.+..+|..++...++.
T Consensus 142 ~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 142 LVANG--LVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EEECC--EEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence 22233 56667789999999999998877765 211111 111222 2 36777788888888877655322111
Q ss_pred eEe-ccCCCC--CCeeEEEec--CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270 307 LRF-RSGHSA--PPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (764)
Q Consensus 307 ~~~-~~~h~~--~v~~i~~~~--~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (764)
... ..+... ....+.-+| .+..++.++.+|.+..+|..+++..
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~-------------------------------- 264 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL-------------------------------- 264 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE--------------------------------
Confidence 000 000000 000010011 3457777888899999998655322
Q ss_pred cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (764)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~ 461 (764)
|.... .... .....+..+++++.+|.+..+|..+|+.+..
T Consensus 265 -----------------------W~~~~---------------~~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 265 -----------------------WKRDA---------------SSYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred -----------------------Eeecc---------------CCcc--CceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 22110 0001 1112467888889999999999999987654
Q ss_pred ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc-ceEEEEEeecCCEEEEEeCCCeEE
Q 004270 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIR 540 (764)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~i~~~~~s~~~~~la~~~~d~~i~ 540 (764)
... ........... .+..+++++.+|.|.++|..+++.+..++.+. .+...-... ++.|++++.||.|+
T Consensus 305 ~~~-------~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~ 374 (377)
T TIGR03300 305 NDE-------LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLY 374 (377)
T ss_pred ccc-------ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEE
Confidence 421 01111122222 35688899999999999999999999888664 333332233 34588888999887
Q ss_pred EE
Q 004270 541 LF 542 (764)
Q Consensus 541 v~ 542 (764)
.|
T Consensus 375 ~~ 376 (377)
T TIGR03300 375 AF 376 (377)
T ss_pred Ee
Confidence 65
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=6.8e-11 Score=125.65 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=120.4
Q ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.|.++|.. +...+.+..+...+...+|+|+|++|+.+..+ ..|.+||+.+++...... . .+.+.+++|+|||+.
T Consensus 171 ~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~-~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F-PGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C-CCCccceEECCCCCE
Confidence 58888875 34445555667788999999999999987654 479999999886543332 2 456778999999985
Q ss_pred EEEEEeCCC--cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCC
Q 004270 239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (764)
Q Consensus 239 ~l~sg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (764)
++++.+.++ .|++||+.++...... .+........|+|+++.|+..+. ++...+|.++...+... .+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~---~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR---RLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EeecCCC
Confidence 555555444 5899999887654333 34455567899999998876654 44445554444333222 2233455
Q ss_pred CCeeEEEecCCCEEEEEeCCC---cEEEEEeec
Q 004270 316 PPLCIRFYANGRHILSAGQDR---AFRLFSVIQ 345 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~ 345 (764)
......|+|+|++++.++.++ .|.+||+.+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 677889999999999888765 566776643
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=7e-11 Score=125.56 Aligned_cols=207 Identities=14% Similarity=0.061 Sum_probs=144.8
Q ss_pred CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCccccccccccC
Q 004270 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (764)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (764)
...+.+++...... ..+. .+...+...+|+|+|++++..... ..|++|++.++...... .+.+
T Consensus 169 ~~~l~~~d~~g~~~--~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGANP--QTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPG 234 (417)
T ss_pred cceEEEEcCCCCCC--EEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCC
Confidence 34566666543221 1111 233467888999999999887654 47999999887554322 3445
Q ss_pred cEEEEEECCCCCEEEE-EeCCC--eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC-C--eEEEEEccCCeE
Q 004270 476 EVVGVACDSTNTLMIS-AGYHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRM 549 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-~--~i~v~d~~~~~~ 549 (764)
.+.+++|+|+++.|+. .+.++ .|++||+.+++...............|+|||+.|+..+.. + .|+++|+.+++.
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 5677899999987764 44444 5888999887655544444445577899999988877653 2 688888887764
Q ss_pred EEEeecCCCCeeEEEEcCCCcEEEEEeCCC---cEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCC
Q 004270 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (764)
Q Consensus 550 ~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~ 621 (764)
..+..+...+....|+|||++|+.++.++ .|.+||+.++.. ..+.........+|+|||++|+.++.++.
T Consensus 315 -~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 315 -RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred -EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCCC
Confidence 34444556678889999999999888776 799999987654 33333333566789999999998888763
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.7e-10 Score=120.57 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=92.1
Q ss_pred EEEEEECCCCCEEEEEe-CCCeEEEE--ECCC-CCeeeeEec-CcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCe
Q 004270 477 VVGVACDSTNTLMISAG-YHGDIKVW--DFKG-RDLKSRWEV-GCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALR 548 (764)
Q Consensus 477 v~~l~~~~~~~~l~s~~-~dg~v~iw--d~~~-~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~ 548 (764)
....+|+|||+.|+..+ .+|...+| ++.. +.....+.. ...+....|||||+.|+....+ ..|.+||+.+++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 34678999999887665 46655555 4432 222333332 3566788999999999877653 479999999887
Q ss_pred EEEEeecCCCCeeEEEEcCCCcEEEEEeC---CCcEEEEEcCccceEEEEeeCCceEEEEEcCCC
Q 004270 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNM 610 (764)
Q Consensus 549 ~~~~~~~h~~~i~~l~~s~dg~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g 610 (764)
... +......+....|+|||++|+..+. ...|++||+.+++..........+...+|+|-.
T Consensus 363 ~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 363 DYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred eEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 643 4333445778999999998875443 357899999888766555555557788888754
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=7.6e-11 Score=117.72 Aligned_cols=193 Identities=13% Similarity=0.256 Sum_probs=157.9
Q ss_pred cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEE------C--------------CCCCEEEEEe
Q 004270 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC------D--------------STNTLMISAG 493 (764)
Q Consensus 434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~--------------~~~~~l~s~~ 493 (764)
|-+.+++..+.||.+++|+...++....|..... -.+..++..| + .+...++-|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-----~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-----LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchh-----ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 4567899999999999999999998888753211 1222233332 1 1334677888
Q ss_pred CCCeEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270 494 YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570 (764)
Q Consensus 494 ~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~ 570 (764)
..|.|.+|+...++....+.. .+++.++.++.+-..|.+++.|+.+..|+....+.++.+++....+.+++.+|||.
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 899999999999999888873 38899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCC-----CCeEEEEEeCCCeEEEEecccccC
Q 004270 571 WLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-----MDVLATAHVDQNGVYLWVNRCMFS 633 (764)
Q Consensus 571 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~-----g~~lat~~~d~~~i~lW~~~~~~~ 633 (764)
.|++|+ +.|++||+++++.+..|.+|.. |.+++|--+ |.++.+...-...+.+|-.+..-.
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k 224 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK 224 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccc
Confidence 999987 6799999999999999998875 999999877 667666555444699998865433
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.6e-10 Score=121.84 Aligned_cols=169 Identities=13% Similarity=0.005 Sum_probs=111.7
Q ss_pred EEEEEccCCCEEEE-EecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CC--eEEEE
Q 004270 428 KACTISACGNFAVL-GTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVW 501 (764)
Q Consensus 428 ~~~~~s~~g~~l~~-g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~v~iw 501 (764)
...+|+|||+.++. ...+| .|+++|+.++...... .+.......+|+||++.++..+. ++ .|.++
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 35789999998875 45566 4778888877643321 34455677899999998876653 33 46677
Q ss_pred ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC-C--eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC
Q 004270 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578 (764)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d 578 (764)
|+.+++..............+|+|||++++..+.+ + .|.++|+.+++.. .+... .......|+|||++|+..+.+
T Consensus 336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEec
Confidence 88777654432222334457899999999887653 3 5666788877653 33322 122345899999998866543
Q ss_pred -C--cEEEEEcCccceEEEEeeC-CceEEEEEcC
Q 004270 579 -G--SLRIWDVILARQIDAIHVD-VSITALSLSP 608 (764)
Q Consensus 579 -g--~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp 608 (764)
+ .+++++. +|+....+..+ ..+...+|||
T Consensus 414 ~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 414 QGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 3 3777786 56666666544 3477788887
No 271
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.9e-10 Score=122.15 Aligned_cols=194 Identities=18% Similarity=0.050 Sum_probs=132.7
Q ss_pred CCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE-EEeCCC--e
Q 004270 424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHG--D 497 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg--~ 497 (764)
...+....|+|+|+.++..+.+ ..|.+|++.++...... ...+.+...+|+|+|+.|+ +...+| .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------NFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------CCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 3567889999999998776543 36899999887654322 2233455689999999887 444455 6
Q ss_pred EEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (764)
Q Consensus 498 v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s 574 (764)
|.+||+.+++...............|+|||+.++..+.. ..|+++|+.+++..+. ...........|+|||++|+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEE
Confidence 888899988765544444556678899999988877643 3688888887764332 222223446789999999987
Q ss_pred EeCC-C--cEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCe--EEEEec
Q 004270 575 SGMD-G--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG--VYLWVN 628 (764)
Q Consensus 575 ~s~d-g--~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~--i~lW~~ 628 (764)
.+.+ + .|.+||+.+++.. .+..........|+|||++++.++.++.. +++++.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 7643 3 5889999887653 33222233466899999999988765432 444443
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.4e-10 Score=121.48 Aligned_cols=170 Identities=15% Similarity=0.024 Sum_probs=112.2
Q ss_pred eEEEEEccCCCEEEEE-ecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CC--eEEE
Q 004270 427 VKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKV 500 (764)
Q Consensus 427 v~~~~~s~~g~~l~~g-~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~v~i 500 (764)
.....|+|+|+.++.. ..+| .|+++|+.++.... +. .+........|+|+|+.++..+. +| .|.+
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT--------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK 315 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc--------cCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 4467899999988754 4444 68888998876543 22 34445567889999998876653 33 5777
Q ss_pred EECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
+++.+++...............|+|||+.++....++ .|.++|+.+++.. .+. +........|+|||++|+.++.
T Consensus 316 ~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 316 VNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred EECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEe
Confidence 8888777544332223345678999999998876532 5888999887653 333 2222345689999999987764
Q ss_pred C---CcEEEEEcCccceEEEEeeC-CceEEEEEcC
Q 004270 578 D---GSLRIWDVILARQIDAIHVD-VSITALSLSP 608 (764)
Q Consensus 578 d---g~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp 608 (764)
+ ..|.++++. |.....+..+ ..+...+|+|
T Consensus 394 ~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 394 QQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred cCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 4 346777774 4444444433 3466777776
No 273
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=9.6e-13 Score=135.93 Aligned_cols=270 Identities=16% Similarity=0.198 Sum_probs=194.4
Q ss_pred eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC--
Q 004270 259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-- 336 (764)
Q Consensus 259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg-- 336 (764)
....++ .|....++++|+-+.+.|+.|+..|.|+++++.++. ......+|..+++.+.-+.||..+++.+.-.
T Consensus 1093 ~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccCc
Confidence 334455 678899999999999999999999999999998873 4555679999999999999998887765433
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
-..+|++..-... .|.
T Consensus 1168 lsaLW~~~s~~~~----------------------------------------------------------------~Hs 1183 (1516)
T KOG1832|consen 1168 LSALWDASSTGGP----------------------------------------------------------------RHS 1183 (1516)
T ss_pred hHHHhccccccCc----------------------------------------------------------------ccc
Confidence 3556765421100 111
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (764)
+ ..-.++.|+..-.+-++|+......+||++++....++..... +....-+...|+|+.++++ .||
T Consensus 1184 f-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1184 F-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred c-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEe---eCc
Confidence 1 3345677777767778888888999999999998887542211 2223336788999998877 355
Q ss_pred eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270 497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s 576 (764)
. +||.+..+.++.+..-..-..-.|+|.|.-++..+ .|||+++.++++....-. -..+.|+..|..+...-
T Consensus 1250 v--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1250 V--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred e--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhhh
Confidence 3 79999887777775544444556999999888865 489999998877665432 25677888777554322
Q ss_pred -----C------------CCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270 577 -----M------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 577 -----~------------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
. -...|.+|..+.+.+.++.....+..++-+|...+|+..-..+
T Consensus 1321 ~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1321 NIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred hhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence 0 1245677777788899999988999999999888887765433
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.35 E-value=8.4e-09 Score=100.10 Aligned_cols=290 Identities=16% Similarity=0.159 Sum_probs=187.3
Q ss_pred eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEcCC
Q 004270 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG-SLQLWNISTKKKLYEFKGW 180 (764)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h 180 (764)
+|++++..| -|...+.+...+-.. .+. +...+.-..+.-++ +.++.|..|| .+-++|..+++... +...
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~i-----qv~-~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr-~e~~ 400 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSI-----QVG-KKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKR-IEKD 400 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeE-----EcC-CCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEE-eeCC
Confidence 699999998 577777665544331 111 22334444555555 5799999999 89999988776554 4445
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC----CcEEEEECCC
Q 004270 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS----GVISIWNLEK 256 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d----g~i~iwd~~~ 256 (764)
-+.|.++..+|+|++++++.....+.+.|+.+|.....-+ ...+-|+...|+|+++ ++|-+--+ ..|+++|+.+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC
Confidence 7889999999999999999999999999999987654433 3367899999999999 88876554 4799999999
Q ss_pred ceeeeeeecccccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCceeeEeccCCCCCCeeE---------
Q 004270 257 RRLQSVIREAHDNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI--------- 320 (764)
Q Consensus 257 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i--------- 320 (764)
++...... ..+.=.+-+|.|++++|..-+. |..+.=+.+..-.. +-++....+...|....
T Consensus 479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vsk-Pylv~L~~g~~sP~~q~p~~~~~ea~ 555 (668)
T COG4946 479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSK-PYLVVLGRGYYSPFNQPPDEANSEAG 555 (668)
T ss_pred CeEEEecC--CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeecc-ceEEEecCCCCChhhcCchhcCcccc
Confidence 88765544 3333456788999998776543 33332222221110 11111111111111100
Q ss_pred -----------EEec--CCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270 321 -----------RFYA--NGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (764)
Q Consensus 321 -----------~~~~--~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (764)
.-.| .+. .-+++-.+|.|.+++..-......
T Consensus 556 e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~----------------------------------- 600 (668)
T COG4946 556 EVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQ----------------------------------- 600 (668)
T ss_pred ceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhh-----------------------------------
Confidence 0011 122 234455566677766532211111
Q ss_pred ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC
Q 004270 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (764)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~ 455 (764)
...+....+.+..+|+++....+. ...++++.+|+||+.+.+ -.+|.+++|+++.
T Consensus 601 -----yy~gq~~kG~l~~ydletkk~~e~--------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 601 -----YYWGQPEKGRLEKYDLETKKVEEY--------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred -----hhcCCCccceEEEEecchhhHHHH--------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 112334557778888887655332 278899999999999999 8899999999875
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.34 E-value=4.6e-09 Score=109.61 Aligned_cols=296 Identities=10% Similarity=0.034 Sum_probs=184.2
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEEC-CeEEEEec--CceEEEecccccceEEEEE
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYG-NHIAVVKR--AHQVATWSRHSAKVNLLLL 101 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g-~~i~vw~~--~~~~~~~~~h~~~v~~l~~ 101 (764)
.++.+++++.++.+.-+|..+|+.+........-..+.++..+..|+++. +.++.+|. ++.+-+.............
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 46677888888999999999999987653322222345666667777664 45888985 5554443222211122223
Q ss_pred eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCcc-----ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004270 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF-----TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176 (764)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 176 (764)
.++.++.++.+|.+..||..+++.. -+....... ....++. + ..++++..+|.+..+|.++|+.+.+
T Consensus 144 ~~~~v~v~~~~g~l~a~d~~tG~~~----W~~~~~~~~~~~~~~~sp~~~-~---~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 144 ANGLVVVRTNDGRLTALDAATGERL----WTYSRVTPALTLRGSASPVIA-D---GGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred ECCEEEEECCCCeEEEEEcCCCcee----eEEccCCCceeecCCCCCEEE-C---CEEEEECCCCEEEEEEccCCCEeee
Confidence 6778888888999999999998873 222221110 0111122 2 3688888899999999999998876
Q ss_pred EcCCCC----C---eEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270 177 FKGWGS----S---ISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (764)
Q Consensus 177 ~~~h~~----~---i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg 247 (764)
...... . ...+.-+| .+..+.+++.+|.+..+|.++|+.+...... ....... ++. .++.++.+|
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~--~~~-~vyv~~~~G 289 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV--DDN-RLYVTDADG 289 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE--eCC-EEEEECCCC
Confidence 532100 0 00111111 3467888888999999999999988766532 1222222 344 577778899
Q ss_pred cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (764)
.|..+|..+++.+............+... .+..+++++.+|.+.+++.++. +.+.....+...+..--...+ .
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG----~~~~~~~~~~~~~~~sp~~~~-~ 362 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG----SFVARLKTDGSGIASPPVVVG-D 362 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC----CEEEEEEcCCCccccCCEEEC-C
Confidence 99999999998776553111112222222 3568889999999999986655 344444444433222212223 3
Q ss_pred EEEEEeCCCcEEEE
Q 004270 328 HILSAGQDRAFRLF 341 (764)
Q Consensus 328 ~l~s~~~dg~i~i~ 341 (764)
.|+.++.||.|..|
T Consensus 363 ~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCceEEEe
Confidence 58889999988765
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.1e-10 Score=117.74 Aligned_cols=196 Identities=12% Similarity=0.022 Sum_probs=129.9
Q ss_pred CCeEEEEEccCCCE---EEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-----
Q 004270 425 TAVKACTISACGNF---AVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY----- 494 (764)
Q Consensus 425 ~~v~~~~~s~~g~~---l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----- 494 (764)
....+-.|||||+. +++...+| .|++.++.++...... ...+.....+|+|||+.|+..+.
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------~~~g~~~~p~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------ALQGNQLMPTFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------cCCCCccceEECCCCCEEEEEECCCCCc
Confidence 44567799999975 33555554 6888888877654332 23444556899999988886653
Q ss_pred CCeEEEEECCCC---CeeeeEecC-cceEEEEEeecCCEEEEEeC-CCe--EEEEEccC-CeEEEEeecCCCCeeEEEEc
Q 004270 495 HGDIKVWDFKGR---DLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLV--IRLFDVVA-LRMVRKFEGHTDRITDFCFS 566 (764)
Q Consensus 495 dg~v~iwd~~~~---~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d~~--i~v~d~~~-~~~~~~~~~h~~~i~~l~~s 566 (764)
+..+..|++..+ +........ ......+|+|||+.|+..++ +|. |+++++.. +.....+..+...+....||
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 223445776653 333333333 34467899999998887764 564 44445542 23345555555677889999
Q ss_pred CCCcEEEEEeCC---CcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC--CeEEEEecc
Q 004270 567 EDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ--NGVYLWVNR 629 (764)
Q Consensus 567 ~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~--~~i~lW~~~ 629 (764)
|||++|+..+.+ ..|.+||+.+++..........+....|+|||++|+....++ ..|++|++.
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 999999876543 469999999887654443334578899999999988665432 247777764
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=5.6e-11 Score=120.87 Aligned_cols=291 Identities=16% Similarity=0.264 Sum_probs=190.9
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCC-CEEEEEeCCCcEEEEE
Q 004270 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWN 253 (764)
Q Consensus 176 ~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~-~~l~sg~~dg~i~iwd 253 (764)
.++. .+++.++.++|.|+-+|.++.-|. .+-|+.. +...+-+.+-..-.|-...|+|... .+-++......-.+|+
T Consensus 20 sl~v-~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 20 SLKV-DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred EEEe-cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 3443 567888999999999999988774 4556553 3333334333344677888887642 2444555566677898
Q ss_pred CCCc--eeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270 254 LEKR--RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (764)
Q Consensus 254 ~~~~--~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 330 (764)
+... +.+..+..+|..+|+.+.|.|..+ .+++++.|-.+..||++... +.+.....-......++|+-....++
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchh
Confidence 7543 344444459999999999999776 88999999999999987664 33333333344455667766333444
Q ss_pred EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (764)
Q Consensus 331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (764)
..+..+.+++||++.+.
T Consensus 175 asshg~~i~vwd~r~gs--------------------------------------------------------------- 191 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGS--------------------------------------------------------------- 191 (1081)
T ss_pred hhccCCceEEEeccCCC---------------------------------------------------------------
Confidence 44455557777765331
Q ss_pred eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEE
Q 004270 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLM 489 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l 489 (764)
...... ++|...|.+++|.. ....+
T Consensus 192 -----------------------------------------------~pl~s~-------K~~vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 192 -----------------------------------------------TPLCSL-------KGHVSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred -----------------------------------------------cceEEe-------cccceeeehHHHhhhhhhhh
Confidence 111111 35666777777754 23467
Q ss_pred EEEeCCCeEEEEECCCC--CeeeeEecCcceEEEEEeecCCEEEEE--eCCCeEEEEEcc----------CCeEEEEeec
Q 004270 490 ISAGYHGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVV----------ALRMVRKFEG 555 (764)
Q Consensus 490 ~s~~~dg~v~iwd~~~~--~~~~~~~~~~~i~~~~~s~~~~~la~~--~~d~~i~v~d~~----------~~~~~~~~~~ 555 (764)
.+++.||+|++||.... +..++.....++..-.+-|-|.-..+- -.+..+.+++.+ ..+++.+|.|
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G 297 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG 297 (1081)
T ss_pred cccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence 88999999999998754 445555666888888888865532222 122244444332 2367899999
Q ss_pred CCCCeeEEEEcCCC----------cEEEEEeCCCcEEEEEcCc
Q 004270 556 HTDRITDFCFSEDG----------KWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 556 h~~~i~~l~~s~dg----------~~l~s~s~dg~i~iwd~~~ 588 (764)
|.+.|....|-..+ -.|+|-+.|.++|+|-+.+
T Consensus 298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 99998877764322 1699999999999999875
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.25 E-value=3.2e-09 Score=96.73 Aligned_cols=288 Identities=15% Similarity=0.155 Sum_probs=188.7
Q ss_pred CCCeEEEEEcCCCCEEEEEE------------cCCeEEEEEccCCceEE--EEeccCCCCEEEEEEee---CCCCEEEEE
Q 004270 181 GSSISSCVSSPALDVVAVGC------------SDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSS---DGQPLLASG 243 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~------------~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~---d~~~~l~sg 243 (764)
.-++.+++..++ +||+|+ ..|.+.+|++...+... ++.......+..+.|+- +|...++-+
T Consensus 14 ~~~~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a 91 (339)
T KOG0280|consen 14 PVPICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDA 91 (339)
T ss_pred CCCccccccccc--eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeec
Confidence 344445544443 666664 34678899887665433 22222245677777763 444456677
Q ss_pred eCCCcEEEEECCCceeeeeeecccc------cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270 244 ASSGVISIWNLEKRRLQSVIREAHD------NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~h~------~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
...|.|.++..........++ +-. ....++.|++.+..++++-.+|.+.+-+.... ..+.....+.|..+.
T Consensus 92 ~a~G~i~~~r~~~~~ss~~L~-~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~ 168 (339)
T KOG0280|consen 92 HARGQIQLYRNDEDESSVHLR-GLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEA 168 (339)
T ss_pred cccceEEEEeeccceeeeeec-ccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceee
Confidence 788999999876554444444 111 12457789999999999999999885443322 112334678999999
Q ss_pred eeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270 318 LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 318 ~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
....|+. +.+.+.+||.|+.+..||++.+..
T Consensus 169 Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~------------------------------------------------ 200 (339)
T KOG0280|consen 169 WTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT------------------------------------------------ 200 (339)
T ss_pred eeeecccCCCceEEecCCCceEEEEEecCCcc------------------------------------------------
Confidence 9999987 557888999999999999862210
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCc
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 476 (764)
.+|.- .+-|...
T Consensus 201 ----------------------------------------------------~i~~n----------------~kvH~~G 212 (339)
T KOG0280|consen 201 ----------------------------------------------------FIWHN----------------SKVHTSG 212 (339)
T ss_pred ----------------------------------------------------eeeec----------------ceeeecc
Confidence 00100 0267788
Q ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECC-CCCeeeeEecCcceEEEEEeecCC-EEEEEeCCCeEEEEEccCC--e---
Q 004270 477 VVGVACDS-TNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--R--- 548 (764)
Q Consensus 477 v~~l~~~~-~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~~d~~i~v~d~~~~--~--- 548 (764)
|.+|.-+| ...++++|+.|..|++||.+ -++++..-...+.|..+..+|.-. .+..++.-.-.+|.+.+.+ +
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~ 292 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI 292 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe
Confidence 88888776 56899999999999999998 567777777779999999999533 2233333334556655543 2
Q ss_pred EEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEE-EEEcCcc
Q 004270 549 MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLR-IWDVILA 589 (764)
Q Consensus 549 ~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~-iwd~~~~ 589 (764)
.....+.|.+-...-.|.....+|+|++ .|..++ +|-.-++
T Consensus 293 ~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 293 VLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 3444556766666666644445788876 577655 7755444
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.23 E-value=6.9e-09 Score=93.24 Aligned_cols=270 Identities=11% Similarity=0.091 Sum_probs=178.6
Q ss_pred CCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 159 QEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 159 ~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~sp-----~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
....+-+|++-+.. .+... ..+.|.| ...+||.|+..|...+|...+.+....+...+...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34456777765432 22222 2344544 3458999999999999999977655544433344343332
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc--CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeE-
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN--AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR- 308 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~- 308 (764)
=..|...-+..++.|.++++.+++.+...... |.. .+.+++++++++++++.+....|-.|.++.... ..++
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--y~~~~ 197 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--YIENI 197 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--eeeee
Confidence 22233334667788999999988766544333 333 388999999999999999999999998876543 2233
Q ss_pred eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270 309 FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (764)
Q Consensus 309 ~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (764)
........-.+..|+.....++++.+||++.+||++.........
T Consensus 198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~----------------------------------- 242 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI----------------------------------- 242 (344)
T ss_pred EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh-----------------------------------
Confidence 334455566788899988999999999999999998654332211
Q ss_pred ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMS 466 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~ 466 (764)
-...+.|.+.++.+.|++.| .+|+..-.-+.+.+.|++++........+.
T Consensus 243 ----------------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 243 ----------------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred ----------------------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 11122467899999999877 466777677899999999987766554332
Q ss_pred ccccccccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 004270 467 ERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (764)
Q Consensus 467 ~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 505 (764)
.. ...|.. .|.+-.|+.++..+.+...+ .+.-|++.+
T Consensus 295 d~-~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 295 DV-ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cc-cccccccccccccccCCCcccccccch-hhheeeccc
Confidence 22 223444 48888888887766665543 344455443
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1.5e-09 Score=98.79 Aligned_cols=237 Identities=13% Similarity=0.112 Sum_probs=160.9
Q ss_pred EEEEEecCCcEEEEEccCCcc--cccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEcCC
Q 004270 105 HILSIDIDGNMFIWAFKGIEE--NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK--LYEFKGW 180 (764)
Q Consensus 105 ~l~s~~~dg~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h 180 (764)
.|+-+..+|.|.++..+..+. ...++...........+.-+++.+ ..++++-.+|.+.+-+.....+ ++.++.|
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~--~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H 164 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG--TKIFVSDSRGSISGVYETEMVLEKVQTWKVH 164 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC--ceEEEEcCCCcEEEEecceeeeeeccccccc
Confidence 456667788888887765443 111222222222223445578888 7899999999999777655544 4588999
Q ss_pred CCCeEEEEEcCC-CCEEEEEEcCCeEEEEEcc-CCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC-c
Q 004270 181 GSSISSCVSSPA-LDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-R 257 (764)
Q Consensus 181 ~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~-~ 257 (764)
.-+.+.+.|+.. .+++.+|+.|+.+.-||++ .++.+..-..-|...|.++.-+|...+++++|+.|-.|++||.++ +
T Consensus 165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 999999999864 4688999999999999999 444444433344678999999988777999999999999999984 5
Q ss_pred eeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCC-ceeeEeccCCCCCCeeEEEecCCCEEEEEe-C
Q 004270 258 RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAG-Q 334 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~ 334 (764)
+++..-. -.+.|+.+.++|.-. .++.+.--+-.++-+.+....+ ...+...+.|.+-...-.|......|+|++ .
T Consensus 245 kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 245 KPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred CccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 6665544 558999999998533 3333333444667666554332 224455566766666666644445677765 4
Q ss_pred CCcEE-EEEeec
Q 004270 335 DRAFR-LFSVIQ 345 (764)
Q Consensus 335 dg~i~-i~d~~~ 345 (764)
|+.++ +|-..+
T Consensus 323 Dk~~~~~Wl~~t 334 (339)
T KOG0280|consen 323 DKKIRQLWLHIT 334 (339)
T ss_pred ccceeeeeeecc
Confidence 66655 675443
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.6e-10 Score=128.76 Aligned_cols=225 Identities=15% Similarity=0.254 Sum_probs=171.2
Q ss_pred CEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeE
Q 004270 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273 (764)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~ 273 (764)
+.......++...-|..+-+..+ ..++-..|.++.=+|... +.++|+.||.+++|....+..+...+.+-...|+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~---~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM---IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred ccCCcccCCccccceecccceeE---eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 33444444455555554432222 223355788888888888 78899999999999999998888888666689999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe---CCCcEEEEEeecccccc
Q 004270 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~dg~i~i~d~~~~~~~~ 350 (764)
+.|+.+|+.+..+..||.+.+|... ++.....+.|......++|-. ..+++++ .++.+.+||......
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-- 2327 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-- 2327 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc--
Confidence 9999999999999999999999765 356677778998888888875 4566654 356677776421100
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
T Consensus 2328 -------------------------------------------------------------------------------- 2327 (2439)
T KOG1064|consen 2328 -------------------------------------------------------------------------------- 2327 (2439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (764)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 510 (764)
+.++ . ..|.+.++++++.|..+++++||.+|.|++||++..++++
T Consensus 2328 ------~s~v----------------------~-------~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2328 ------NSLV----------------------H-------TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred ------ccee----------------------e-------eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 0000 0 2799999999999999999999999999999999988887
Q ss_pred eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec
Q 004270 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG 555 (764)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~ 555 (764)
.++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2373 ~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2373 TFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred Hhhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 7765 33 577999999999999999998877777653
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=2.6e-10 Score=127.19 Aligned_cols=182 Identities=16% Similarity=0.252 Sum_probs=142.4
Q ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.++...-|..+.+... ++.+-..|.++.-+|...+-++|+.||.|++|....++.+..+....+..|+.+.|+.+|.
T Consensus 2188 ~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn- 2264 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN- 2264 (2439)
T ss_pred CCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-
Confidence 3444444544322221 2334567888888898899999999999999999999999999876678999999999998
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc---CCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (764)
-+..+..||.+.+|... .++....+ .|........|.. ..+++++ .++.+.+||....... .++. ..|.+
T Consensus 2265 k~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDG 2337 (2439)
T ss_pred ceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCC
Confidence 78888899999999986 55555555 7988899999976 5677765 3688999986554332 2333 68999
Q ss_pred CCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
.++++++.|..+.|++||.+|.+++||++..+...
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 99999999999999999999999999997655433
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.18 E-value=3.3e-08 Score=114.26 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=60.8
Q ss_pred eEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-------------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEE
Q 004270 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584 (764)
Q Consensus 518 i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-------------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iw 584 (764)
...++++++|.++++-..++.|++||..++....... ++-.....++++++|+.+++-+.++.|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 4588999999988888999999999998876653321 112356789999999998888899999999
Q ss_pred EcCccceE
Q 004270 585 DVILARQI 592 (764)
Q Consensus 585 d~~~~~~~ 592 (764)
|+.+++..
T Consensus 886 d~~~~~~~ 893 (1057)
T PLN02919 886 DLNKGEAA 893 (1057)
T ss_pred ECCCCccc
Confidence 99988753
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=3.8e-08 Score=103.07 Aligned_cols=304 Identities=13% Similarity=0.107 Sum_probs=183.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-Ce-E-----EEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEecc
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS-SI-S-----SCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHS 222 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~i-~-----~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~ 222 (764)
+++++++.+|.+.-+|.++|+.+...+.... .. . .+.-+| ++..+++++.+|.+.-+|.++|+.+.+....
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 5799999999999999999999988754220 00 0 000111 3567788889999999999999998887653
Q ss_pred CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc----CeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
+.+.+--...++ .++.++.+|.|..+|.++|+.+......... ...+... .+..++.++.++.+...+..
T Consensus 150 --~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 150 --GEALSRPVVSDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred --CceecCCEEECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence 233221112244 4666778899999999999988777621110 0011111 12356667778888877766
Q ss_pred CCCCCceeeEec-cC-CC-CCCeeEEEec--CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 299 TTDGDPRLLRFR-SG-HS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 299 ~~~~~~~~~~~~-~~-h~-~~v~~i~~~~--~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
++...++..... .+ +. .....+..+| .+..++.++.+|.+..+|..+++..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------------------------ 279 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------------------------ 279 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------------------------
Confidence 553222211000 00 00 0000111122 3456777778888888887665432
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
|.... ..... ....+..+++++.+|.+..+|.
T Consensus 280 -------------------------------W~~~~---------------~~~~~--~~~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 280 -------------------------------WKREY---------------GSVND--FAVDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred -------------------------------EeecC---------------CCccC--cEEECCEEEEEcCCCeEEEEEC
Confidence 22110 00001 1124678888889999999999
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEE-EEEeecCCEEE
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVK-IVYHRVNGLLA 531 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~-~~~s~~~~~la 531 (764)
.+|+.+-..... .+ ....+..+ .+.+++.++.||.+.+.|..+++.+...+.. ..+.+ ..+ .+..|+
T Consensus 312 ~tG~~~W~~~~~------~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~ 380 (394)
T PRK11138 312 RGGVELWSQSDL------LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLL 380 (394)
T ss_pred CCCcEEEccccc------CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEE
Confidence 998765443210 11 11112222 2457888899999999999999998887654 33322 122 356888
Q ss_pred EEeCCCeEEEEEc
Q 004270 532 TVADDLVIRLFDV 544 (764)
Q Consensus 532 ~~~~d~~i~v~d~ 544 (764)
+++.||.++.++.
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 8999999888764
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2e-08 Score=104.31 Aligned_cols=190 Identities=11% Similarity=-0.020 Sum_probs=128.5
Q ss_pred CeEEEEEccCCCE-EEEEecC---CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE-eCC--CeE
Q 004270 426 AVKACTISACGNF-AVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYH--GDI 498 (764)
Q Consensus 426 ~v~~~~~s~~g~~-l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d--g~v 498 (764)
......|+|+|+. ++..+.. ..|+++|+.+++..... ...+......|+|||+.++.. +.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5678899999985 5544333 47999999888665543 234455667899999877643 333 568
Q ss_pred EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE
Q 004270 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (764)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~ 575 (764)
.++|+.+++...............|+|||+.|+..++. ..|+++|+.+++..+..... . ....|||||++|+..
T Consensus 260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~--~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K--NNSSVSTYKNYIVYS 336 (419)
T ss_pred EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--cCceECCCCCEEEEE
Confidence 88888888755443333334566899999988887753 26888899887764433221 1 124899999999876
Q ss_pred eCC---------CcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 576 GMD---------GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 576 s~d---------g~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
+.. ..|.+.|+.++... .+..........|+|||++++.....+..-.||.+
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 643 36888898888653 33323334468999999999888766543445544
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=5.2e-10 Score=110.07 Aligned_cols=287 Identities=17% Similarity=0.193 Sum_probs=193.0
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC---ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
+|...|..++-..+.+-+++++.|.+|++|.+...... ..+..+...|..+|..+.|..+-++++++ ||.+.+||
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWD 810 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWD 810 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeec
Confidence 89999999988888999999999999999998765432 23667778999999999999998888765 78899999
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
.-.++......... ..+
T Consensus 811 PFigr~Laq~~dap---------------------------------------------------------------k~~ 827 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAP---------------------------------------------------------------KEG 827 (1034)
T ss_pred ccccchhHhhhcCc---------------------------------------------------------------ccC
Confidence 76554433221100 001
Q ss_pred CCCCeEEEEEccCCCEEEEE-ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 423 NPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
..+.|.++. +-+...++.| +...+|+++|.+++.....+..-. ..+.+.-++++++.+.|++++.+-..|+|.+.
T Consensus 828 a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 828 AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence 112222221 1133445555 677899999999887766654211 12556778999999999999999999999999
Q ss_pred ECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEE-EEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270 502 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL-FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 502 d~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v-~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg 579 (764)
|.++|+.+..+... .....++ .|..+.++....|.++.| |....+....+.+....+-.-+ -.-|.-|+++....
T Consensus 904 DaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn 980 (1034)
T KOG4190|consen 904 DARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGN 980 (1034)
T ss_pred ecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCc
Confidence 99999988777543 3333333 344566777777888888 8877776666555433332211 12366788888777
Q ss_pred cEEEEEcCc----cceEEEE---eeCCceEEEEEcCCCCeEEEEEeCCCeEEE
Q 004270 580 SLRIWDVIL----ARQIDAI---HVDVSITALSLSPNMDVLATAHVDQNGVYL 625 (764)
Q Consensus 580 ~i~iwd~~~----~~~~~~~---~~~~~v~~l~~sp~g~~lat~~~d~~~i~l 625 (764)
.+.||.-.. ...+..+ ..+...++++--|=+.-+..|...|. |.+
T Consensus 981 ~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~-IaL 1032 (1034)
T KOG4190|consen 981 ILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA-IAL 1032 (1034)
T ss_pred EEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc-eee
Confidence 888885221 1112222 23445888888885555555555553 543
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=9.8e-08 Score=110.39 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=84.3
Q ss_pred CCeEEEEEccCCCEEEE-EecCCcEEEEECcCCcccceecCcc-----ccc--------cccccCcEEEEEECCCCCEEE
Q 004270 425 TAVKACTISACGNFAVL-GTAGGWIERFNLQSGISRGSYLDMS-----ERS--------NYAHNGEVVGVACDSTNTLMI 490 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~-g~~~g~i~i~~~~~~~~~~~~~~~~-----~~~--------~~~h~~~v~~l~~~~~~~~l~ 490 (764)
.....++++|+|+.+++ .+.++.|++||+.++.......... ... ....-....+++++++|..++
T Consensus 740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 34566788888775444 4445788888877654221100000 000 001112346899999999889
Q ss_pred EEeCCCeEEEEECCCCCeeeeEecC--------------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270 491 SAGYHGDIKVWDFKGRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (764)
Q Consensus 491 s~~~dg~v~iwd~~~~~~~~~~~~~--------------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~ 549 (764)
+-..++.|++||..++......... .....++++++|+++++-+.++.|++||+.+++.
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 8899999999999887655433211 2567899999999888888999999999998865
No 288
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=99.09 E-value=4e-05 Score=82.39 Aligned_cols=587 Identities=13% Similarity=0.062 Sum_probs=303.0
Q ss_pred CCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEE-------EecCCCCcceEEEEEeCC-----eEEEEECC-----eE
Q 004270 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLV-------LVGPQLPKKIRALASYRD-----YTFAAYGN-----HI 77 (764)
Q Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~-------~~~~~~~~~I~~~~~~~~-----~~~~a~g~-----~i 77 (764)
..++-++.+.+...+.++|.-+-=++-.+.+..-. -.. ..-+||..|++-.. +.++.+.+ .+
T Consensus 306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSL 384 (1096)
T KOG1897|consen 306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSL 384 (1096)
T ss_pred cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCceEEEEeCCCCCCcE
Confidence 55667777888888888887333344444332111 111 23458888876533 56665532 28
Q ss_pred EEEecCc---eEEE--ecccccceEEEE--Ee---CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeC
Q 004270 78 AVVKRAH---QVAT--WSRHSAKVNLLL--LF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHP 147 (764)
Q Consensus 78 ~vw~~~~---~~~~--~~~h~~~v~~l~--~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p 147 (764)
++.+.+- +++. +.| -..+..+. ++ .++|+.+- -+.-++..+... .. ......-.....+.++|.
T Consensus 385 RiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e-~e---e~~~~gf~~~~~Tif~S~ 458 (1096)
T KOG1897|consen 385 RIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEE-VE---ETEDPGFSTDEQTIFCST 458 (1096)
T ss_pred EEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccceEEEEEccc-eE---EeccccccccCceEEEEc
Confidence 8887543 2333 555 33345554 22 33555443 344455555433 10 111111122334445554
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCE
Q 004270 148 DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV 227 (764)
Q Consensus 148 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v 227 (764)
-.+ +.|+-...+ .|++++-. ..+..+.. .+.++....+.+...+++++.++.+...++..+.............|
T Consensus 459 i~g-~~lvQvTs~-~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~ev 533 (1096)
T KOG1897|consen 459 ING-NQLVQVTSN-SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEV 533 (1096)
T ss_pred cCC-ceEEEEecc-cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheeccee
Confidence 444 345544443 48888743 34455554 45566666666666778888777777777776653333333335789
Q ss_pred EEEEEeeC--CCC---EEEEEeCCCcEEEEE-CCCceeeeeeeccc---ccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 228 TALAFSSD--GQP---LLASGASSGVISIWN-LEKRRLQSVIREAH---DNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 228 ~~l~fs~d--~~~---~l~sg~~dg~i~iwd-~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
.|+.++|- ++. +++.|.++..+.+.- +.+...+.....+- ...|.-..|-.|..+|.++..||.+..+.++
T Consensus 534 aCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 534 ACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred EEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 99999975 443 888888776655443 33333333221111 2344555565668899999999999999888
Q ss_pred CCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHH-----------------
Q 004270 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA----------------- 361 (764)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------------- 361 (764)
...+...-.+...--..|+.--.|+..++.-+.+..|+-..+|..+..-....++......-+
T Consensus 614 ~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~ 693 (1096)
T KOG1897|consen 614 INTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGG 693 (1096)
T ss_pred cccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCC
Confidence 776543333322233445555555554433333333444444443322111111111000000
Q ss_pred -----------------hhccchhhhhccCc-eeEeeecccccccccceeEeeeCCceEEEEEccceeecc-eeecCCCC
Q 004270 362 -----------------RKLKMKEEELKLKP-VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE-HILRPCPE 422 (764)
Q Consensus 362 -----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~ 422 (764)
-.+..........+ -..+.....|.........-...-..++++|-.+.+.-. +.+.. ..
T Consensus 694 ~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-~E 772 (1096)
T KOG1897|consen 694 ALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-NE 772 (1096)
T ss_pred ceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc-cc
Confidence 00000000000000 000111111111110000001112334445544433211 11110 11
Q ss_pred CCCCeEEEEEccC-CCEEEEEec----------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 423 NPTAVKACTISAC-GNFAVLGTA----------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 423 ~~~~v~~~~~s~~-g~~l~~g~~----------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
.-..+.++.|..| +.++++|+. .|.|.+|....+..+..... ..-.+.+.++..- +|+++|.
T Consensus 773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e------~~v~Gav~aL~~f-ngkllA~ 845 (1096)
T KOG1897|consen 773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE------TVVKGAVYALVEF-NGKLLAG 845 (1096)
T ss_pred eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee------eeeccceeehhhh-CCeEEEe
Confidence 1234555567777 788888864 58899998877443333210 1223444444432 5666654
Q ss_pred EeCCCeEEEEECCCCCeee-eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc--CCeEEEEee-cCCCCeeEEEEcC
Q 004270 492 AGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRMVRKFE-GHTDRITDFCFSE 567 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~--~~~~~~~~~-~h~~~i~~l~~s~ 567 (764)
- ...|++|++.+.+.++ .-....++..+...-.|..+++|.--+++.+...+ .|.....-+ -+....+++.+-.
T Consensus 846 I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~ 923 (1096)
T KOG1897|consen 846 I--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD 923 (1096)
T ss_pred c--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence 4 4689999998884443 44455889999999999999999887777765544 333433222 3667788888876
Q ss_pred CCcEEEEEeCCCcEEEEEcCc-------------------cceEEEEeeCCceEE--EEEcCCCCeEEEEEeCCCeEEE
Q 004270 568 DGKWLLSSGMDGSLRIWDVIL-------------------ARQIDAIHVDVSITA--LSLSPNMDVLATAHVDQNGVYL 625 (764)
Q Consensus 568 dg~~l~s~s~dg~i~iwd~~~-------------------~~~~~~~~~~~~v~~--l~~sp~g~~lat~~~d~~~i~l 625 (764)
+..|+. +..+|.+.+-..++ |+.+..+++..-|.. -..+|-+..+..|..+| +|-+
T Consensus 924 ~d~ylg-ae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~G-sIG~ 1000 (1096)
T KOG1897|consen 924 DDTYLG-AENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNG-SIGI 1000 (1096)
T ss_pred CceEEe-ecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccc-eEEE
Confidence 655554 55677777765543 333444443333444 24456555677777777 4543
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=5.4e-08 Score=87.66 Aligned_cols=236 Identities=8% Similarity=0.003 Sum_probs=151.0
Q ss_pred eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEE-EeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Q 004270 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI-MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180 (764)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 180 (764)
.-.+|+.++..|...+|...+.+.+. .....+...+...- ..... -.+..++.|.++++.+++-+..-......
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~---~~cd~snn~v~~~~r~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHL---YQCDVSNNDVTLVKRYCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccce---eeecccccchhhhhhhcccc--cceeeccCCcceeEEEEecCcccceeecc
Confidence 45689999999999999998776532 22222222111110 11111 24777888888888887644332222221
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc-e-EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-E-LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~-~-~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~ 258 (764)
.-.+.++++++|++++++.+....|..|.+.... . +..........-.+.+|+.... .+|++..||++.|||++...
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccc
Confidence 2337899999999999999999999999987543 2 2323344455668889998887 89999999999999998763
Q ss_pred ee----eeeecccccCeeEEEEecCCC--EEEEEcCCCcEEEEEecCCCCCceeeEe---ccCCC-CCCeeEEEecCCCE
Q 004270 259 LQ----SVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRF---RSGHS-APPLCIRFYANGRH 328 (764)
Q Consensus 259 ~~----~~~~~~h~~~v~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~---~~~h~-~~v~~i~~~~~~~~ 328 (764)
.. ...+..|.+.+..+.|++.|. +|+..-.-+.+.+-|++....-..++.. ...|. ..+....|+.++..
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES 316 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence 32 222346899999999998765 4554444567888877665332222111 12233 33777778777766
Q ss_pred EEEEeCCCcEEEEEee
Q 004270 329 ILSAGQDRAFRLFSVI 344 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~ 344 (764)
+.+...+. +.-|++.
T Consensus 317 ~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 317 NDVKNELQ-GAEYNIL 331 (344)
T ss_pred cccccchh-hheeecc
Confidence 66655543 3444443
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=3e-09 Score=108.57 Aligned_cols=201 Identities=16% Similarity=0.249 Sum_probs=149.4
Q ss_pred ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEcc
Q 004270 138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK----KKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVR 211 (764)
Q Consensus 138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~ 211 (764)
+....+.++|.+ +-++.++..| +.+.|+... ..++.+. .-.|-...|+|. ..+-++......-.+|++.
T Consensus 25 ~~~~a~si~p~g--rdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 25 GGFNAVSINPSG--RDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred Ccccceeecccc--chhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 344566788998 7799998888 777777643 2233222 234555667764 4566666667778899986
Q ss_pred C--CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeeecccccCeeEEEEecCCCEEEEEcC
Q 004270 212 Y--DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 212 ~--~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 288 (764)
. ...+.-+.++|...|+.+.|.|..+.++++++.|..+..||+++.. ++.... .-...-..+.|+...+.+...+.
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchhhhcc
Confidence 3 4455555677789999999999998899999999999999998864 444444 44456678999887776777777
Q ss_pred CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeeccc
Q 004270 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQ 347 (764)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~ 347 (764)
.+.|++||.+.+. ..+..+++|...++.+.|.. ....+.+++.||+++.||.....
T Consensus 179 g~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred CCceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 8889999987664 46667778999999999987 44568899999999999986543
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=1.8e-09 Score=102.96 Aligned_cols=170 Identities=17% Similarity=0.218 Sum_probs=122.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
.....+..++.+++++++..+....+++.........+.... ........++.+..+......-.++....+.+|...
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 344556778899999999999998888776554422221000 001122233333333333333344555667777777
Q ss_pred CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEe-ecCCCCeeEEEEcCCCcEEEEEeCCCcEEE
Q 004270 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (764)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i 583 (764)
.+.+...+.+-..++.++++||+++++++..|..|+|-....--.+..| -||+.-|..++.-++ +.|+++|.|++|++
T Consensus 141 ~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 141 SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 7777777777799999999999999999999999999888766655554 479999999999865 56899999999999
Q ss_pred EEcCccceEEEEee
Q 004270 584 WDVILARQIDAIHV 597 (764)
Q Consensus 584 wd~~~~~~~~~~~~ 597 (764)
||+.+|+++.++..
T Consensus 220 Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 220 WDITSGKLLDTCDL 233 (390)
T ss_pred EecccCCcccccch
Confidence 99999999987764
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=9.2e-09 Score=98.24 Aligned_cols=170 Identities=12% Similarity=0.190 Sum_probs=122.2
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 271 v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
...+..++++++++.+..+....+++++......+++... .-....+.+.|..+......+..-|-+.-+|+....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~--- 140 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD--- 140 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccc---
Confidence 3445567788888888888888888887765433443333 233445566666655555554444444444432211
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
. ....+.-+|-+.++.+
T Consensus 141 ----------------------------------------------------------~-----~~~~~~lGhvSml~dV 157 (390)
T KOG3914|consen 141 ----------------------------------------------------------S-----GRCEPILGHVSMLLDV 157 (390)
T ss_pred ----------------------------------------------------------c-----cCcchhhhhhhhhhee
Confidence 0 1112223566899999
Q ss_pred EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (764)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 510 (764)
+++||+++++++..|+.|++-.......+..+. .+|..-|..+++-++ +.|+++|.|++|++||+.+++.+.
T Consensus 158 avS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-------lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 158 AVSPDDQFIITADRDEKIRVSRYPATFVIESFC-------LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred eecCCCCEEEEecCCceEEEEecCcccchhhhc-------cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccc
Confidence 999999999999999999999998888888876 499999999999865 459999999999999999999998
Q ss_pred eEecC
Q 004270 511 RWEVG 515 (764)
Q Consensus 511 ~~~~~ 515 (764)
++...
T Consensus 230 t~dl~ 234 (390)
T KOG3914|consen 230 TCDLS 234 (390)
T ss_pred ccchh
Confidence 77654
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=5.6e-10 Score=109.85 Aligned_cols=305 Identities=15% Similarity=0.124 Sum_probs=190.3
Q ss_pred CeEEEEEEeCCeEEEEecCCCeEE----EecCCCCcceEEEE-EeCCeEEEEECC--eEEEEecC---c------eEEEe
Q 004270 26 TENFVTVSVGKAFHIYNCAKLNLV----LVGPQLPKKIRALA-SYRDYTFAAYGN--HIAVVKRA---H------QVATW 89 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~~~~~~----~~~~~~~~~I~~~~-~~~~~~~~a~g~--~i~vw~~~---~------~~~~~ 89 (764)
+..++.-+..-+-..-|.++.++- ..+.+|...|++++ ++....|+.... .|++|... . ...++
T Consensus 701 Gn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY 780 (1034)
T KOG4190|consen 701 GNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY 780 (1034)
T ss_pred cchHHHHHhhhhHhhcCCcccccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh
Confidence 334443333333333355554432 23478999999986 556677775533 39999732 1 34558
Q ss_pred cccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEE-eCCCcEEEE
Q 004270 90 SRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG-SQEGSLQLW 166 (764)
Q Consensus 90 ~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~-~~dg~i~iw 166 (764)
+.|+.+|.++.| +-++++++ ||.|.+||.--+.........-+........|.-+-+. ..+..| +...+|+++
T Consensus 781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~--~iliAgcsaeSTVKl~ 856 (1034)
T KOG4190|consen 781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDR--HILIAGCSAESTVKLF 856 (1034)
T ss_pred hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcc--hheeeeccchhhheee
Confidence 899999999998 45566665 89999999876665221111111122222333322233 334444 788999999
Q ss_pred eCCCCeEEEEEc-----CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270 167 NISTKKKLYEFK-----GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (764)
Q Consensus 167 d~~~~~~~~~~~-----~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~ 241 (764)
|.+.++-..+++ +...-+.+++..+.|+.+|.|-.+|.|.+.|.++|+.+.....- ......++- |..+ .|+
T Consensus 857 DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqlaa-psdq-~L~ 933 (1034)
T KOG4190|consen 857 DARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLAA-PSDQ-ALA 933 (1034)
T ss_pred ecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhcC-chhH-HHH
Confidence 999988766664 44567899999999999999999999999999999988766533 222333332 3334 677
Q ss_pred EEeCCCcEEE-EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec--cCCCCCCe
Q 004270 242 SGASSGVISI-WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHSAPPL 318 (764)
Q Consensus 242 sg~~dg~i~i-wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~h~~~v~ 318 (764)
....|.++.+ |..-.+....+.+ ....+..-+ -.-|+-|+++...+.+.+|.-.........+..+ ....+..+
T Consensus 934 ~saldHslaVnWhaldgimh~q~k-pppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lT 1010 (1034)
T KOG4190|consen 934 QSALDHSLAVNWHALDGIMHLQDK-PPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLT 1010 (1034)
T ss_pred hhcccceeEeeehhcCCeeeeccC-CCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccc
Confidence 7778889988 9877776555544 222221111 1236678888888888888422111111111111 23456678
Q ss_pred eEEEecCCCEEEEEeCCCcEEE
Q 004270 319 CIRFYANGRHILSAGQDRAFRL 340 (764)
Q Consensus 319 ~i~~~~~~~~l~s~~~dg~i~i 340 (764)
+++..|-+.-++.|...|.|++
T Consensus 1011 ala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1011 ALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eeeeccccchhhccCCCCceee
Confidence 8888886667778888887765
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.01 E-value=9.4e-07 Score=92.57 Aligned_cols=301 Identities=9% Similarity=0.032 Sum_probs=179.2
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCC----------cce-EEEEEeCCeEEEEECC-eEEEEec--CceEEEec
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP----------KKI-RALASYRDYTFAAYGN-HIAVVKR--AHQVATWS 90 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~I-~~~~~~~~~~~~a~g~-~i~vw~~--~~~~~~~~ 90 (764)
.++.+.+.+.++.+.-+|.++|+.+....... ..+ ..+++..+.+|+++.+ .++.+|. ++.+-+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 35566667778899999999999887653211 011 2355667777777643 5888885 55444432
Q ss_pred ccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCc-cccEEEEeCCCCCCEEEEEeCCCcEEEEeCC
Q 004270 91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169 (764)
Q Consensus 91 ~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~ 169 (764)
........-...+..++.++.+|.+.-+|..+++... ....... .......+|.-....+++++.+|.+..+|..
T Consensus 148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W----~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKW----TVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCCceecCCEEECCEEEEECCCCEEEEEEccCCCEee----eecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 2222122223356778888889999999999998732 2222110 0000001121111468888899999999999
Q ss_pred CCeEEEEEcCCCC-------CeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270 170 TKKKLYEFKGWGS-------SISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240 (764)
Q Consensus 170 ~~~~~~~~~~h~~-------~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l 240 (764)
+|+.+........ ....+..+| .+..+.+++.+|.+..+|..+|+.+.+.... ....+.. ++. .+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~~--~~~-~v 297 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFAV--DGG-RI 297 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcEE--ECC-EE
Confidence 9998776542110 011111222 2456777888999999999999987765432 1122222 344 56
Q ss_pred EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCee-
Q 004270 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC- 319 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~- 319 (764)
+.++.+|.+..+|..+++.+............+... .+..++.++.||.+.+.|.+++ +.+....-....+.+
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG----~~~~~~~~~~~~~~s~ 371 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG----RFVAQQKVDSSGFLSE 371 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC----CEEEEEEcCCCcceeC
Confidence 777889999999999998765443111111222222 2447788889999998876654 333332222222222
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEe
Q 004270 320 IRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 320 i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
..+ .+..|+.++.||.+..++.
T Consensus 372 P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE--ECCEEEEEeCCceEEEEeC
Confidence 122 3447888999998887763
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=8.8e-09 Score=94.45 Aligned_cols=333 Identities=16% Similarity=0.248 Sum_probs=195.5
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-----eeeeeecccc------------cCeeEEEEecCCC--EEE
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----LQSVIREAHD------------NAIISLHFFANEP--VLM 284 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-----~~~~~~~~h~------------~~v~~l~~~~~~~--~l~ 284 (764)
...|+++.|...|. +|++|...|.|.+|.-+... ....++ +|. ..|..+.|..++. .++
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 46799999999998 99999999999999765432 222233 443 4678888887653 566
Q ss_pred EEcCCCcEEEEEecCC------------------CCC---------cee------e-----E-eccCCCCCCeeEEEecC
Q 004270 285 SASADNSIKMWIFDTT------------------DGD---------PRL------L-----R-FRSGHSAPPLCIRFYAN 325 (764)
Q Consensus 285 s~~~d~~i~vw~~~~~------------------~~~---------~~~------~-----~-~~~~h~~~v~~i~~~~~ 325 (764)
..+.|.+|++|.+... .+. +++ + + .-..|...++++.|..|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 6778999999987543 100 000 0 0 11356667788888888
Q ss_pred CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (764)
...++++. |=.|.+|++.-... ...+.
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~----------------------------------------------------sFnIV 210 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDG----------------------------------------------------SFNIV 210 (460)
T ss_pred hheeeecc-ceeeeeccccccCC----------------------------------------------------ceEEE
Confidence 77777654 55588887653222 12222
Q ss_pred EccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCCcccce----e----cCccccccccccCc
Q 004270 406 RLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGS----Y----LDMSERSNYAHNGE 476 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~----~----~~~~~~~~~~h~~~ 476 (764)
|+....+... ...|++..|+|.. +.+...++.|.|++-|++....-.. + .........+-...
T Consensus 211 DiKP~nmeeL--------teVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsS 282 (460)
T COG5170 211 DIKPHNMEEL--------TEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSS 282 (460)
T ss_pred eccCccHHHH--------HHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhh
Confidence 2222211111 1456777788754 5666778889999999874322110 0 00000011233467
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCC-CeeeeEecC-------------cce---EEEEEeecCCEEEEEeCCCeE
Q 004270 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-------------CSL---VKIVYHRVNGLLATVADDLVI 539 (764)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~-------------~~i---~~~~~s~~~~~la~~~~d~~i 539 (764)
|..+.|+++|+++++-+. -+|++||.... .++.++..+ ..| -.+.||.|.+.+.+|+.....
T Consensus 283 ISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 283 ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred hcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence 889999999999988765 68999998743 456665432 122 357788889999999888777
Q ss_pred EEEEccCC-----eEEEEeecCCC----------CeeEEE-EcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEE
Q 004270 540 RLFDVVAL-----RMVRKFEGHTD----------RITDFC-FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA 603 (764)
Q Consensus 540 ~v~d~~~~-----~~~~~~~~h~~----------~i~~l~-~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~ 603 (764)
-+|-..+. -.+..+..|.. .|.... ...+.....+.+.+|.+..-.= ...+.....|..
T Consensus 362 giyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~~eD-----~d~ld~~k~ilh 436 (460)
T COG5170 362 GIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACED-----PDNLDLLKKILH 436 (460)
T ss_pred eeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceeeccC-----cchhHHHHHHHh
Confidence 77764321 11222222211 111111 1111122344444444332211 122233334677
Q ss_pred EEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 604 LSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 604 l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
..|+|-.+-+|.+..+. ++++.
T Consensus 437 ~sWhp~e~svaiaatnn--lfvfs 458 (460)
T COG5170 437 RSWHPFEDSVAIAATNN--LFVFS 458 (460)
T ss_pred hccCCcccceeeeecCc--eEEEe
Confidence 88999888888887775 66653
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.99 E-value=7.9e-09 Score=92.52 Aligned_cols=187 Identities=12% Similarity=0.164 Sum_probs=117.4
Q ss_pred EEEEEeCCCcEEEEeCCCCeEE------------EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE-EE
Q 004270 153 KVIVGSQEGSLQLWNISTKKKL------------YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TF 219 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~------------~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~-~~ 219 (764)
.++++..++.+...+.-++.+. +.+..|.++-.+-+.+--+..++++..||.+.+++.+....+. +.
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i 128 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI 128 (319)
T ss_pred eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc
Confidence 4666777776666655444333 3333333333333444446789999999999999977522211 11
Q ss_pred eccCCCCEEEEEEeeCCCCEEEEEe-----CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEE
Q 004270 220 THSMRGAVTALAFSSDGQPLLASGA-----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIK 293 (764)
Q Consensus 220 ~~~~~~~v~~l~fs~d~~~~l~sg~-----~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~ 293 (764)
...+. .-.+.+....+. ++.++. .-+..+.|+++..+.+.... .....|.+++-+|..+ .+++|+.||.+.
T Consensus 129 ~~~~~-~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~ 205 (319)
T KOG4714|consen 129 PSIHS-GSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVG 205 (319)
T ss_pred ccccc-cccccceeeccc-EEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEE
Confidence 11111 112223333444 333332 23456677765443332222 1223489999888654 777888899999
Q ss_pred EEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeec
Q 004270 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~ 345 (764)
+||.+... .+...+..|..++..+-|+| ++..|+++++||.+.-||..+
T Consensus 206 l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 206 LWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99988763 45556678999999999999 888999999999999999764
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-08 Score=98.66 Aligned_cols=259 Identities=15% Similarity=0.218 Sum_probs=180.0
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEee
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVI 344 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~ 344 (764)
-|...|+.+... -.+++.+++.||.++.|.-... .....+..+..|...+.+++.+-++..+.|.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 377777776654 3459999999999999953321 223456667789999999999999999999777 9999999987
Q ss_pred cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (764)
+-....-+....+++ ..-|.... .
T Consensus 85 n~DminmiKL~~lPg------------------------------------------~a~wv~sk--------------G 108 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPG------------------------------------------FAEWVTSK--------------G 108 (558)
T ss_pred ccchhhhcccccCCC------------------------------------------ceEEecCC--------------C
Confidence 654332211110000 00000000 0
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..+.. ..+..-.+|.+.++|-........+. ..-|..+|..+.+.+.+..+++....|.|.-|...
T Consensus 109 d~~s~--------IAVs~~~sg~i~VvD~~~d~~q~~~f------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 109 DKISL--------IAVSLFKSGKIFVVDGFGDFCQDGYF------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred Ceeee--------EEeecccCCCcEEECCcCCcCcccee------cccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 11111 22233456889999876655333222 14799999999999999999999999999999877
Q ss_pred C------CCeeeeEe----------cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec-------------
Q 004270 505 G------RDLKSRWE----------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG------------- 555 (764)
Q Consensus 505 ~------~~~~~~~~----------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~------------- 555 (764)
. .+....++ ......++.|+|++..+++-..|..|++++..++++++.+..
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y 254 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPY 254 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccc
Confidence 3 11222222 236788999999999999999999999999999977655421
Q ss_pred -------------------CC-CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270 556 -------------------HT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597 (764)
Q Consensus 556 -------------------h~-~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 597 (764)
|. ..-+.+.|...|++|+.++.=| |+|.++.++.+++.+.-
T Consensus 255 ~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 255 GLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred ccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 11 1245678999999999998777 99999999998887743
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=1.5e-06 Score=84.46 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=123.9
Q ss_pred eEEEEEc-cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC--------Ce
Q 004270 427 VKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------GD 497 (764)
Q Consensus 427 v~~~~~s-~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--------g~ 497 (764)
...+++. ++ ..++++...+ +.++|..+++......... ........+.++++++|++.++.... |.
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEET---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC---CCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence 6667777 55 5555555544 4555988886544443100 01144678899999999987776643 55
Q ss_pred EEEEECCCCCeeeeEecCcceEEEEEeecCCEEE-EEeCCCeEEEEEccCCe-------EEEEeecCCCCeeEEEEcCCC
Q 004270 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDVVALR-------MVRKFEGHTDRITDFCFSEDG 569 (764)
Q Consensus 498 v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~d~~i~v~d~~~~~-------~~~~~~~h~~~i~~l~~s~dg 569 (764)
|..++.. ++.......-.....++|+|+++.|+ +-+..+.|..|++.... ....+....+..-.+++..+|
T Consensus 117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 7777776 55554445557788999999999776 45667899999986321 122223223347789999999
Q ss_pred cEEEEEeCCCcEEEEEcCccceEEEEeeC-CceEEEEEc-CCCCeEEEEE
Q 004270 570 KWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLS-PNMDVLATAH 617 (764)
Q Consensus 570 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~s-p~g~~lat~~ 617 (764)
++.++....+.|.++|.. |+++..+..+ ..+++++|. ++.+.|..++
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 988887788999999976 9999999888 569999994 6766666554
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=4.3e-07 Score=94.45 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=102.2
Q ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCE-EEEEEc---CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDV-VAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (764)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~-la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (764)
.|.+-|.... ..+.+.... .+....|+|||+. ++..+. +..|.++|+.+++...... . .+......|+|||+
T Consensus 170 ~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~-~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S-QGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C-CCcEEeeEECCCCC
Confidence 5666565433 334343333 7788999999985 664433 3569999998887654443 2 56677889999998
Q ss_pred CEEEEEeCC--CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCC
Q 004270 238 PLLASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 238 ~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
.++++.+.+ ..|.++|+.+++... +. .+........|+|||+.|+..+ ..+.-.+|.++...+..+.+.. .+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~ 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE-cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc
Confidence 566665544 568888988876443 33 2333344568999998776665 3455555555554443322221 1211
Q ss_pred CCCeeEEEecCCCEEEEEeCC
Q 004270 315 APPLCIRFYANGRHILSAGQD 335 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~d 335 (764)
...|+|||+.++..+..
T Consensus 323 ----~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 323 ----NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred ----CceECCCCCEEEEEEcC
Confidence 24899999998876643
No 300
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.97 E-value=5e-06 Score=75.03 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=95.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
.+++.|+..+.+.-.|..+|+++.+-.- ...|.+-+.- -|++++.|+..|.+.+.+.++|.....+..-..-.+ ...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceE
Confidence 5799999999999999999999887543 3444443333 578899999999999999999998888775422222 233
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcE
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i 292 (764)
..+++. ++..|+.|++.+..|.++...+...+ ...+...+-+..|....|..+...|.+
T Consensus 101 ~d~~~g-lIycgshd~~~yalD~~~~~cVyksk-cgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 101 CDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK-CGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred EcCCCc-eEEEecCCCcEEEecccccceEEecc-cCCceeccceecCCCceEEEEeccceE
Confidence 456777 99999999999999999998888766 222233334445522334444444443
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.95 E-value=9e-07 Score=81.55 Aligned_cols=246 Identities=13% Similarity=0.166 Sum_probs=128.4
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEecCCCCCceee---EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
++.+.+|+.||.. .|..|.+-..... -..++ ...+.....-+.++|+||+..|+.+...|+|++||+... ...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Dd--f~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDD--FSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELF 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCC--chheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeE
Confidence 4556778766655 4555655432211 11121 122233344578999999999999999999999998642 222
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
.++... .+. ......|..+
T Consensus 79 ~I~p~~---------------------~~~----------------------------------------~d~~~Aiagl 97 (282)
T PF15492_consen 79 VIPPAM---------------------SFP----------------------------------------GDLSDAIAGL 97 (282)
T ss_pred EcCccc---------------------ccC----------------------------------------Cccccceeee
Confidence 222110 000 0001222223
Q ss_pred EEccC------CCEEEEEecCCcEEEEECcCC-----cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270 431 TISAC------GNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (764)
Q Consensus 431 ~~s~~------g~~l~~g~~~g~i~i~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 499 (764)
.|-+. ...|++-.-.|.++-|-+..+ +....+. ....+...|.++.++|..++|+.||....
T Consensus 98 ~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-----f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~-- 170 (282)
T PF15492_consen 98 IFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-----FSSHYPHGINSAVYHPKHRLLLVGGCEQN-- 170 (282)
T ss_pred EeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-----ecccCCCceeEEEEcCCCCEEEEeccCCC--
Confidence 22221 123444445565655554222 1111211 01235678999999999998888874322
Q ss_pred EEECCCCCeeeeEecCcceEEEEEeecCCEE--EEEeCCC------eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE
Q 004270 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL--ATVADDL------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571 (764)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l--a~~~~d~------~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~ 571 (764)
+.+. .......+++-..-.+..+. +...+|+ +-.+|.+-+.+...........|..|..||||+.
T Consensus 171 ----~~~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~ 243 (282)
T PF15492_consen 171 ----QDGM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL 243 (282)
T ss_pred ----CCcc---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCE
Confidence 0000 00001122221111111111 1111111 1123333333322222234577999999999999
Q ss_pred EEEEeCCCcEEEEEcCccceEEEEeeC
Q 004270 572 LLSSGMDGSLRIWDVILARQIDAIHVD 598 (764)
Q Consensus 572 l~s~s~dg~i~iwd~~~~~~~~~~~~~ 598 (764)
||+...+|.|.+|++++-++.+.+..+
T Consensus 244 La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 244 LACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEEEcCCeEEEEecCcchhhcccchh
Confidence 999999999999999998877766543
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.95 E-value=1.1e-08 Score=91.57 Aligned_cols=165 Identities=19% Similarity=0.294 Sum_probs=105.4
Q ss_pred eeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEcCCCCEEEEEEc-----CCe
Q 004270 131 GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFKGWGSSISSCVSSPALDVVAVGCS-----DGK 204 (764)
Q Consensus 131 ~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~sp~~~~la~g~~-----dg~ 204 (764)
..+..+.........+..+ +.++++..||.+.+.+.+.-. ..+.+..-...-.+.+....++.+.++.- -+.
T Consensus 83 ~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTD--NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred eeeeccCCCCCcccccccC--CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 3333343333333444444 679999999999999875411 11111111111112223334444444321 234
Q ss_pred EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC-CEE
Q 004270 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVL 283 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l 283 (764)
.+.|+++-.+.+..-... ...|++++-+|..++++++|+.||.+.+||.++......+..+|+.+++.+.|+|.. ..|
T Consensus 161 ~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 455555433332222222 235999999998888999999999999999999866665556999999999999954 589
Q ss_pred EEEcCCCcEEEEEec
Q 004270 284 MSASADNSIKMWIFD 298 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~ 298 (764)
++++.||++-.||-.
T Consensus 240 ft~sedGslw~wdas 254 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAS 254 (319)
T ss_pred eEecCCCcEEEEcCC
Confidence 999999999999765
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.94 E-value=1.1e-06 Score=80.94 Aligned_cols=147 Identities=19% Similarity=0.163 Sum_probs=97.1
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEE--eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee
Q 004270 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTF--THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~--~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~ 261 (764)
.++.+++|++||+-- |..|.|-..+.+- .+.+. ..+..-.=+.++||||+. +||.+...|+|+++|+... .+.
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~-~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGS-ELF 78 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccc-eeE
Confidence 367788999888754 5677777665432 22222 222233567899999999 9999999999999998754 334
Q ss_pred eeeccc------ccCeeEEEEecCC------CEEEEEcCCCcEEEEEecCCC-CCceeeEe---ccCCCCCCeeEEEecC
Q 004270 262 VIREAH------DNAIISLHFFANE------PVLMSASADNSIKMWIFDTTD-GDPRLLRF---RSGHSAPPLCIRFYAN 325 (764)
Q Consensus 262 ~~~~~h------~~~v~~l~~~~~~------~~l~s~~~d~~i~vw~~~~~~-~~~~~~~~---~~~h~~~v~~i~~~~~ 325 (764)
.+..++ ..+|..+.|.+.. ..|+.-..+|.++-|-+.... ...+.... ...+...|.++.|+|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 444233 3467778786532 256666778888888765421 12222222 2235779999999999
Q ss_pred CCEEEEEeCC
Q 004270 326 GRHILSAGQD 335 (764)
Q Consensus 326 ~~~l~s~~~d 335 (764)
.+.|+.||..
T Consensus 159 h~LLlVgG~~ 168 (282)
T PF15492_consen 159 HRLLLVGGCE 168 (282)
T ss_pred CCEEEEeccC
Confidence 8888887754
No 304
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.91 E-value=9.6e-07 Score=92.14 Aligned_cols=178 Identities=10% Similarity=0.003 Sum_probs=119.6
Q ss_pred CeEEEEEccCCCEEEEEecC---C-cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 426 AVKACTISACGNFAVLGTAG---G-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~~---g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
....++++++|+++++.+.+ | .+...+.........+. -.. .-++.++|++... .++.|.+.
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn----------i~~--iea~vkdGK~~~V--~gn~V~VI 301 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN----------IAR--IEEAVKAGKFKTI--GGSKVPVV 301 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc----------hHH--HHHhhhCCCEEEE--CCCEEEEE
Confidence 44567889999999887632 2 22222221111111110 000 0023446776655 36789999
Q ss_pred ECCC-----CCeeeeEecCcceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeE------------EEEeecCCCCeeEE
Q 004270 502 DFKG-----RDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRM------------VRKFEGHTDRITDF 563 (764)
Q Consensus 502 d~~~-----~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~------------~~~~~~h~~~i~~l 563 (764)
|..+ .+.+..+........+.++|||+++++++. +.++.|+|+.+.+. +.+.+--.+ -...
T Consensus 302 D~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHT 380 (635)
T PRK02888 302 DGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHT 380 (635)
T ss_pred ECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceE
Confidence 9998 577888888899999999999998887765 88999999988652 444443233 3467
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcCc----------cceEEEEeeCCceEEEEE------cCCCCeEEEEEe
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSITALSL------SPNMDVLATAHV 618 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~v~~l~~------sp~g~~lat~~~ 618 (764)
+|.++|....|-..|..|..|++.+ ...++.+..|..+-.+.- .|||++|++...
T Consensus 381 aFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 8999998888888999999999987 345666666655444444 689999988754
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=5.4e-08 Score=89.42 Aligned_cols=246 Identities=15% Similarity=0.245 Sum_probs=151.9
Q ss_pred ccceEEEEEe--CCEEEEEecCCcEEEEEccCCcc--------------cccceeeEecCCccccEEEEeCCCCCCEEEE
Q 004270 93 SAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEE--------------NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV 156 (764)
Q Consensus 93 ~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 156 (764)
...|+++.++ |.||++|+..|.|.++.-+.... ...-+..++........-.+.+.+ .+.++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~-r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG-RNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC-cceEEE
Confidence 3445566654 55666666666666665443220 000011222222222222344444 367888
Q ss_pred EeCCCcEEEEeCCCCe--E-----------------------------------E-----EEE-cCCCCCeEEEEEcCCC
Q 004270 157 GSQEGSLQLWNISTKK--K-----------------------------------L-----YEF-KGWGSSISSCVSSPAL 193 (764)
Q Consensus 157 ~~~dg~i~iwd~~~~~--~-----------------------------------~-----~~~-~~h~~~i~~~~~sp~~ 193 (764)
.+.|.+|++|.+.... . + +.. ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999774320 0 0 011 3566778889999998
Q ss_pred CEEEEEEcCCeEEEEEccCCceEE---EEeccC----CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee-----
Q 004270 194 DVVAVGCSDGKIHVHNVRYDEELV---TFTHSM----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS----- 261 (764)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~---~~~~~~----~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~----- 261 (764)
..++++. |-.|.+|++.--..-. .++.+. ..-|++..|+|....++.-.+..|.|++-|++...+.-
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8887754 5789999987433222 222210 23588999999876677777889999999998442210
Q ss_pred -eee---------cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC------------CCC--
Q 004270 262 -VIR---------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS------------APP-- 317 (764)
Q Consensus 262 -~~~---------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~------------~~v-- 317 (764)
... .+-...|..+.|+++|+++++-+. .++++||++.... ++.+..-|. ..|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~---pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN---PIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC---CceeechHHHHHHHHHhhhhccceee
Confidence 000 122457889999999999887654 6899999887653 333333331 122
Q ss_pred -eeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 318 -LCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 318 -~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
..+.|+.|.+.+++|+.....-+|-+.
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eEEEEecCCcccccccccccceeeeccc
Confidence 457788899999999988888887643
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=2.9e-05 Score=70.23 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=79.5
Q ss_pred eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Q 004270 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG 181 (764)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 181 (764)
-|++++.|+..|.+.+-+.++++. +..+...+.......+.+++ ..++.|+.|++.+..|.++..+++..+...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ----IWNFVILETVKVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh----eeeeeehhhhccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCC
Confidence 588899999999999999999977 44444444555556677888 789999999999999999999999988755
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC
Q 004270 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~ 213 (764)
+...+-+..|-..-|..+...|.|.--+.+.+
T Consensus 136 ~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 136 GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 55555566663334555555677766665544
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=4.4e-06 Score=81.13 Aligned_cols=217 Identities=14% Similarity=0.094 Sum_probs=138.4
Q ss_pred CCeEEEEecCCCeEEEecCCC--CcceEEEEE-eCCeEEEEECC-eEEEEec--CceEEEecccccceEEEEEeCCEEEE
Q 004270 35 GKAFHIYNCAKLNLVLVGPQL--PKKIRALAS-YRDYTFAAYGN-HIAVVKR--AHQVATWSRHSAKVNLLLLFGEHILS 108 (764)
Q Consensus 35 ~~~i~iwd~~~~~~~~~~~~~--~~~I~~~~~-~~~~~~~a~g~-~i~vw~~--~~~~~~~~~h~~~v~~l~~~g~~l~s 108 (764)
+++|..||..+++.+....-- .....+.++ .....|++.++ .++.||. ++.+-+..............+..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v 81 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV 81 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence 578999999999999877321 222333244 66677777544 4999995 66555543311111113567888888
Q ss_pred EecCCcEEEEEccCCcccccceeeEecCC---ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC--
Q 004270 109 IDIDGNMFIWAFKGIEENLAPVGHVKLDD---KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-- 183 (764)
Q Consensus 109 ~~~dg~v~vWd~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-- 183 (764)
++.++.+..+|..+++..... ..... ...........+ +.++++..++.|..+|+++|+.+.........
T Consensus 82 ~~~~~~l~~~d~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 82 GTSDGSLYALDAKTGKVLWSI---YLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EETTSEEEEEETTTSCEEEEE---EE-SSCTCSTB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccceeeeEecccCCcceeeee---ccccccccccccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 888999999999999883321 11111 111222222234 67999998999999999999999988764422
Q ss_pred --------eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270 184 --------ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (764)
Q Consensus 184 --------i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~ 255 (764)
+..-....++ .+..+..+|.+.-+|+.+++.+.... ...+..+ ...++. .|+.++.++.|..||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLK 230 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCT-EEEEEETTTEEEEEETT
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCC-EEEEEeCCCEEEEEECC
Confidence 1222233344 77777777754444999999775333 2223331 345566 67777789999999999
Q ss_pred Cceeeee
Q 004270 256 KRRLQSV 262 (764)
Q Consensus 256 ~~~~~~~ 262 (764)
+++.+..
T Consensus 231 tG~~~W~ 237 (238)
T PF13360_consen 231 TGKVVWQ 237 (238)
T ss_dssp TTEEEEE
T ss_pred CCCEEeE
Confidence 9987643
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=3.3e-06 Score=81.98 Aligned_cols=220 Identities=19% Similarity=0.172 Sum_probs=139.3
Q ss_pred CCcEEEEEccCCcccccceeeEecCCccccEE-EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEc
Q 004270 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS 190 (764)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s 190 (764)
+|+|..||..+++. +-............ ...+++ +.+++++.++.|..||..+|+.+.++.. ...+.... .
T Consensus 2 ~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKE----LWSYDLGPGIGGPVATAVPDG--GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-V 73 (238)
T ss_dssp TSEEEEEETTTTEE----EEEEECSSSCSSEEETEEEET--TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-E
T ss_pred CCEEEEEECCCCCE----EEEEECCCCCCCccceEEEeC--CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-e
Confidence 68889999988887 44444322122222 133344 5788889999999999999999998876 33322222 2
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCceEEEE-eccC--CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc
Q 004270 191 PALDVVAVGCSDGKIHVHNVRYDEELVTF-THSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH 267 (764)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~-~~~~--~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h 267 (764)
.++..+++++.++.+..+|..+|+.+.+. .... ......+....++. .++.+..++.|..+|+++|+.+..... .
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~-~ 151 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPV-G 151 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEES-S
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeec-C
Confidence 34556777788899999999999999885 3221 11122333333355 677888899999999999999888773 3
Q ss_pred ccC----------eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 268 DNA----------IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 268 ~~~----------v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
... +..-....++ .++.++.++.+..+|+.++. .+-... ...+.. ....++..++.++.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~----~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE----KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE----EEEEEC--SS-ECE-CEECCCTEEEEEETTTE
T ss_pred CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC----EEEEec--CCCccC-CceeeCCEEEEEeCCCE
Confidence 322 1122222344 67777777753333666552 222211 111111 13457778888889999
Q ss_pred EEEEEeeccccc
Q 004270 338 FRLFSVIQDQQS 349 (764)
Q Consensus 338 i~i~d~~~~~~~ 349 (764)
+..||+.+++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999887654
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.5e-08 Score=92.75 Aligned_cols=275 Identities=14% Similarity=0.113 Sum_probs=180.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC--CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-CCcEEEEECCC
Q 004270 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLEK 256 (764)
Q Consensus 180 h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-dg~i~iwd~~~ 256 (764)
|...|+.+..+. .+++.+++.||.++.|--.. |-........|.+.|.+++.+-+|. ++.+.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEEeec
Confidence 677777776665 47999999999999997442 2222222233467899999999998 8888776 99999999988
Q ss_pred ceeeeeeecccccCeeEEEE--ecCCC--EEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270 257 RRLQSVIREAHDNAIISLHF--FANEP--VLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 257 ~~~~~~~~~~h~~~v~~l~~--~~~~~--~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (764)
-.....++. ......+.| ++... .++ +.-.++.+.++|-. .........-.-|..+|.++.+.+-+..+++
T Consensus 86 ~DminmiKL--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~--~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 86 FDMINMIKL--VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF--GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred cchhhhccc--ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc--CCcCccceecccccCceEEEEeeccccceee
Confidence 766655541 111222233 22211 233 33346778887533 3333444555679999999999999999999
Q ss_pred EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcccee
Q 004270 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (764)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (764)
....|.|..|.....- .+.... ..|.+..
T Consensus 162 iD~~gmVEyWs~e~~~---qfPr~~----------------------------------------------l~~~~K~-- 190 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPF---QFPRTN----------------------------------------------LNFELKH-- 190 (558)
T ss_pred ccccceeEeecCCCcc---cCcccc----------------------------------------------ccccccc--
Confidence 9999999999876310 000000 0011100
Q ss_pred ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccc-----------------------
Q 004270 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER----------------------- 468 (764)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~----------------------- 468 (764)
+.-+-.........+++.++|+|..+..-..|..|++++..+|...+.+......
T Consensus 191 --eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmave 268 (558)
T KOG0882|consen 191 --ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVE 268 (558)
T ss_pred --cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHH
Confidence 0111111233477889999999999999999999999999999887766432211
Q ss_pred -ccccccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 004270 469 -SNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514 (764)
Q Consensus 469 -~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 514 (764)
.+..|.. .-+.+.|+..+++|+-++-= -|++.++.+++..+.+.-
T Consensus 269 relek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 269 RELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILGK 315 (558)
T ss_pred hhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEecc
Confidence 1112222 34567888889999888763 488999999887776643
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.81 E-value=3.8e-05 Score=74.34 Aligned_cols=296 Identities=11% Similarity=0.126 Sum_probs=168.8
Q ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEEEEccCCceEEEEeccCCCC----
Q 004270 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNVRYDEELVTFTHSMRGA---- 226 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------~dg~i~iwd~~~~~~~~~~~~~~~~~---- 226 (764)
+.+.++|.++++.+-.+.. +-.-.+..||+++.+++++ ..-.|.+||..+-.....+..+.+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4699999999998888764 3334577899999888753 23469999999998888776553211
Q ss_pred --EEEEEEeeCCCCEEEEE--eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC
Q 004270 227 --VTALAFSSDGQPLLASG--ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (764)
Q Consensus 227 --v~~l~fs~d~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 302 (764)
...++++.||+ +++.. +-...|.|-|+..++.+..+. -.+ +..+--+++ ..+.+.+.||++.-..++....
T Consensus 95 ~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEID--TPG-CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEE--GTS-EEEEEEEET-TEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeec--CCC-EEEEEecCC-CceEEEecCCceEEEEECCCCC
Confidence 23467888998 55443 345679999999999988876 222 222222222 3578888999999998886543
Q ss_pred Ccee-eEeccCCCCCCe-eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 303 DPRL-LRFRSGHSAPPL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 303 ~~~~-~~~~~~h~~~v~-~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
..+. ...+.....++. .-++...+..++-.+..|.|+-.|+........-+-.......+
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~------------------ 231 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK------------------ 231 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH------------------
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc------------------
Confidence 2211 112222223332 33445555566667888888888876543211100000000000
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
-...|...| ++++.+...+.+++.- .....+. |+.+ .-.|.+||+.+++.+.
T Consensus 232 ~~~WrPGG~-Q~~A~~~~~~rlyvLM-h~g~~gs--------HKdp------------------gteVWv~D~~t~krv~ 283 (342)
T PF06433_consen 232 ADGWRPGGW-QLIAYHAASGRLYVLM-HQGGEGS--------HKDP------------------GTEVWVYDLKTHKRVA 283 (342)
T ss_dssp HTTEEE-SS-S-EEEETTTTEEEEEE-EE--TT---------TTS-------------------EEEEEEEETTTTEEEE
T ss_pred ccCcCCcce-eeeeeccccCeEEEEe-cCCCCCC--------ccCC------------------ceEEEEEECCCCeEEE
Confidence 001111111 3344444444444421 1111111 1110 1157888999999888
Q ss_pred eecCccccccccccCcEEEEEECCCCC-EEEEE-eCCCeEEEEECCCCCeeeeEecCcce
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNT-LMISA-GYHGDIKVWDFKGRDLKSRWEVGCSL 518 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i 518 (764)
.+. -...+.+|+++.+.+ +|++. ..++.+.+||..+++.++.++.-+.-
T Consensus 284 Ri~---------l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~ 334 (342)
T PF06433_consen 284 RIP---------LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGET 334 (342)
T ss_dssp EEE---------EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS
T ss_pred EEe---------CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCC
Confidence 874 234577899998775 55554 45799999999999999988755443
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.79 E-value=2.5e-05 Score=75.99 Aligned_cols=192 Identities=15% Similarity=0.094 Sum_probs=123.5
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEc-CCCCEEEEEEcCCeEEEEEccCCceEEEEec
Q 004270 143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS-PALDVVAVGCSDGKIHVHNVRYDEELVTFTH 221 (764)
Q Consensus 143 ~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s-p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~ 221 (764)
.++.+... ..+++-...+.|..|+..+++... +.... ...+++. +++ .++++...+ +.++|..+++.......
T Consensus 5 p~~d~~~g-~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 5 PVWDPRDG-RLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEETTTT-EEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred eEEECCCC-EEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 45666331 345555568889999988876544 33222 6677777 664 555556544 56669988865444443
Q ss_pred --c--CCCCEEEEEEeeCCCCEEEEEeCC--------CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcC
Q 004270 222 --S--MRGAVTALAFSSDGQPLLASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASA 288 (764)
Q Consensus 222 --~--~~~~v~~l~fs~d~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~ 288 (764)
. .......+++.++|+ +.++.... |.|..++.. ++...... .-...+.++|+|+++.|+ +-+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeecccc
Confidence 1 245788999999998 66665533 568888877 55444433 455678999999998765 5566
Q ss_pred CCcEEEEEecCCCCCc---eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 289 DNSIKMWIFDTTDGDP---RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 289 d~~i~vw~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
.+.|..++++...... +....+....+.+-.+++..+|+..++....+.|.+++..
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 7888888887554321 2222222223347889999999888877778888888864
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=2.7e-08 Score=92.86 Aligned_cols=155 Identities=19% Similarity=0.275 Sum_probs=124.0
Q ss_pred ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----CeeeeEecCcc
Q 004270 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCS 517 (764)
Q Consensus 443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~ 517 (764)
+.+-.+-+-|+.+|.... | ...+.|.++.|...+.++..|...|.|...|++.+ .+...+-+++.
T Consensus 231 G~sqqv~L~nvetg~~qs-f---------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss 300 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQS-F---------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS 300 (425)
T ss_pred cccceeEEEEeecccccc-c---------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence 344567777887765432 1 45678888999988899999999999999999854 56777888899
Q ss_pred eEEEEEee-cCCEEEEEeCCCeEEEEEccCCeE---EEEeecCCCCeeEE--EEcCCCcEEEEEeCCCcEEEEEcCccce
Q 004270 518 LVKIVYHR-VNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDF--CFSEDGKWLLSSGMDGSLRIWDVILARQ 591 (764)
Q Consensus 518 i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~~~---~~~~~~h~~~i~~l--~~s~dg~~l~s~s~dg~i~iwd~~~~~~ 591 (764)
++++..-. ++.+|.+.+.+|+|.+||++--++ +.+++||...-.-+ ...+....+++++.|...|||.+.+|.+
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 99998877 788999999999999999987777 99999997544333 3456677899999999999999999999
Q ss_pred EEEEeeCCc-----eEEEEEc
Q 004270 592 IDAIHVDVS-----ITALSLS 607 (764)
Q Consensus 592 ~~~~~~~~~-----v~~l~~s 607 (764)
+.+++.+.. +.+++|.
T Consensus 381 l~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 381 LCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeccCCCCccccccccceehh
Confidence 999887553 4555554
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.75 E-value=4.6e-06 Score=79.64 Aligned_cols=197 Identities=12% Similarity=0.147 Sum_probs=144.7
Q ss_pred CCeEEEEEcc-CCCEEEEEecCC-cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-----CCCe
Q 004270 425 TAVKACTISA-CGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----YHGD 497 (764)
Q Consensus 425 ~~v~~~~~s~-~g~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-----~dg~ 497 (764)
.....++.+| .+..++.+-.-| ...+||..++.....+.....+-+.+| -+|++||++|++.- ..|.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence 4456678888 566777787777 677899999999888765555555555 47999999999864 3588
Q ss_pred EEEEECC-CCCeeeeEecC-cceEEEEEeecCCEEEEEeC------------------CCeEEEEEccCCeEEEE--e--
Q 004270 498 IKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD------------------DLVIRLFDVVALRMVRK--F-- 553 (764)
Q Consensus 498 v~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~------------------d~~i~v~d~~~~~~~~~--~-- 553 (764)
|-|||.. +-+.+.++..+ -....+.+.|||+.|+++.. +.++...|..+|+++.+ +
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 9999999 56667777655 45677889999988887642 33677778889998877 4
Q ss_pred ecCCCCeeEEEEcCCCcEEEEEeCCC-------cEEEEEcCccceEEEEee--------CCceEEEEEcCCCCeEEEEEe
Q 004270 554 EGHTDRITDFCFSEDGKWLLSSGMDG-------SLRIWDVILARQIDAIHV--------DVSITALSLSPNMDVLATAHV 618 (764)
Q Consensus 554 ~~h~~~i~~l~~s~dg~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~--------~~~v~~l~~sp~g~~lat~~~ 618 (764)
.-|...|..+++.++|..++..-..| -|-+++ .++.+..+.. ..-+-+++++++|.++++++-
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 33788899999999998766544333 233333 2333333332 334899999999999999988
Q ss_pred CCCeEEEEecc
Q 004270 619 DQNGVYLWVNR 629 (764)
Q Consensus 619 d~~~i~lW~~~ 629 (764)
-++.+.+|+..
T Consensus 237 rGg~~~~~d~~ 247 (305)
T PF07433_consen 237 RGGRVAVWDAA 247 (305)
T ss_pred CCCEEEEEECC
Confidence 88789999764
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.74 E-value=1.8e-06 Score=90.24 Aligned_cols=328 Identities=9% Similarity=0.033 Sum_probs=179.4
Q ss_pred EEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCC--------CEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004270 106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL--------NKVIVGSQEGSLQLWNISTKKKLYEF 177 (764)
Q Consensus 106 l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~ 177 (764)
+.|++..|.|+|+-+.+..+ +..+. +|+|+... +.++..+..|....|.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~----l~~ip---------vf~~~~~~G~G~~~esk~~l~~~~~~~~~~~g---------- 125 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRE----LMRIP---------VFNRDSATGWGITNESKKVLGEGARGGKYLNG---------- 125 (635)
T ss_pred EeeCCccceEEEEecCCcce----EEEee---------eecCCCCcccCCchhHHHHhhccccCCcccCC----------
Confidence 67888899999999999887 44443 23332210 2233222112222221
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCceEEEEeccCCCCEEEEE-------------------EeeCCC
Q 004270 178 KGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALA-------------------FSSDGQ 237 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~-------------------fs~d~~ 237 (764)
..|.-.++.-.=..||++|.+-.. +.+|-..+++..++-..+..+....+..++ ++|||+
T Consensus 126 D~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk 205 (635)
T PRK02888 126 DTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGK 205 (635)
T ss_pred CcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCC
Confidence 112211221122347888887664 456666666654443333322222233333 345665
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc--EEEEEecCCCCCceeeEeccCCCC
Q 004270 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS--IKMWIFDTTDGDPRLLRFRSGHSA 315 (764)
Q Consensus 238 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~--i~vw~~~~~~~~~~~~~~~~~h~~ 315 (764)
.+..+.-..+.+.+.|.++.+...++. -.+....++++++++++++.+.+.. ..+-.++..+.. .+..+.. .
T Consensus 206 ~l~~~~ey~~~vSvID~etmeV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni--~ 279 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETMEVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNI--A 279 (635)
T ss_pred EeecccceeEEEEEEECccceEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEch--H
Confidence 232333345678888888887777776 2335577889999999888863221 111111211111 0000000 0
Q ss_pred CCeeEEEecCCCEEEEEeCCCcEEEEEeec-----ccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQ-----DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
. .-++.++|++... .++.|.+.|..+ ......+
T Consensus 280 ~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-------------------------------------- 317 (635)
T PRK02888 280 R--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-------------------------------------- 317 (635)
T ss_pred H--HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE--------------------------------------
Confidence 0 0023346666555 256688888664 1111111
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceec-Ccccc
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYL-DMSER 468 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~-~~~~~ 468 (764)
.-......+.++|||+++++++. +.++.++|+.+.+....-. .+...
T Consensus 318 -------------------------------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 318 -------------------------------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred -------------------------------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 11256778999999999887665 7899999998765311000 00000
Q ss_pred --ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC----------CCeeeeEecCcceEEEEE------eecCCEE
Q 004270 469 --SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG----------RDLKSRWEVGCSLVKIVY------HRVNGLL 530 (764)
Q Consensus 469 --~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----------~~~~~~~~~~~~i~~~~~------s~~~~~l 530 (764)
....-...-...+|+++|....|...|..|-.|++.. ...+..+..+..+-.+.. .+||++|
T Consensus 367 vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l 446 (635)
T PRK02888 367 VVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWL 446 (635)
T ss_pred EEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEE
Confidence 0001133445678999999888888999999999876 345555666655555555 6789999
Q ss_pred EEEeC
Q 004270 531 ATVAD 535 (764)
Q Consensus 531 a~~~~ 535 (764)
++...
T Consensus 447 ~~~nk 451 (635)
T PRK02888 447 VSLNK 451 (635)
T ss_pred EEccc
Confidence 88743
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.73 E-value=3.7e-08 Score=63.93 Aligned_cols=39 Identities=41% Similarity=0.868 Sum_probs=37.1
Q ss_pred CeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 547 ~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
++++.++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.73 E-value=6.4e-06 Score=79.59 Aligned_cols=272 Identities=13% Similarity=0.183 Sum_probs=153.3
Q ss_pred CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CCCcEEEEEecCCCCCceeeEeccC----
Q 004270 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSG---- 312 (764)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~~~~~~~~~---- 312 (764)
+.+.++|..+++.+..+..+.. -.+..+|+++.+++++ ..-.|.+||..+-.....+. ...+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~-iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE-IPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-ETTS-B--
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-cCCcchhe
Confidence 4799999999999999884443 3466799999888754 23468899876653221111 1111
Q ss_pred CCCCCeeEEEecCCCEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 313 HSAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 313 h~~~v~~i~~~~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
.......++++.|+++++... --.+|.+.|+...+...++..+
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------------------------------- 137 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----------------------------------- 137 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------------------------------
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------------------------------
Confidence 112334556777777766542 3345666666655544443221
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECc-CCcccceecCcccc
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSER 468 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~ 468 (764)
+ |..+-|. .+-+..-+.||.+.-+.+. .|+....... .
T Consensus 138 ----------------------------------G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~---~ 177 (342)
T PF06433_consen 138 ----------------------------------G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK---V 177 (342)
T ss_dssp ----------------------------------S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE---E
T ss_pred ----------------------------------C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc---c
Confidence 0 1111111 1335556667777666665 3333211100 0
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee--eEec-----------CcceEEEEEeecCCEEEEEeC
Q 004270 469 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV-----------GCSLVKIVYHRVNGLLATVAD 535 (764)
Q Consensus 469 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~-----------~~~i~~~~~s~~~~~la~~~~ 535 (764)
....+..-...-+++..+..++-.+.+|.|+--|+....... .+.. .+.-.-+++++..+.|.+-..
T Consensus 178 F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh 257 (342)
T PF06433_consen 178 FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH 257 (342)
T ss_dssp SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence 001111112223344445556557788888888887664322 2211 134455788877666655432
Q ss_pred C----------CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc-EEEEE-eCCCcEEEEEcCccceEEEEeeC
Q 004270 536 D----------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS-GMDGSLRIWDVILARQIDAIHVD 598 (764)
Q Consensus 536 d----------~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~s~-s~dg~i~iwd~~~~~~~~~~~~~ 598 (764)
. ..|.++|+.+++.+.++.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+|++++.+..-
T Consensus 258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 258 QGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp E--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 1 2688999999999999874 24688999999876 56544 46899999999999999988753
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.9e-06 Score=82.60 Aligned_cols=166 Identities=11% Similarity=0.122 Sum_probs=115.5
Q ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (764)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~ 241 (764)
+++.+..+.+...-+.+|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-|..+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeE
Confidence 67777666777777788999999999999887 7888999999999999999999888875 78999999999998999
Q ss_pred EEeCCCcEEEEECCCceeee-eee-cccccCeeEEEEe------cCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC
Q 004270 242 SGASSGVISIWNLEKRRLQS-VIR-EAHDNAIISLHFF------ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH 313 (764)
Q Consensus 242 sg~~dg~i~iwd~~~~~~~~-~~~-~~h~~~v~~l~~~------~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (764)
.|..+|.|.+||++..+-.. .+. .-...+|..++.. +.+.+|+..+.+ +..|++....+.+.++..+ +.
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EP 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CC
Confidence 99999999999998653221 111 0122344444443 334455544433 5677665554433332222 34
Q ss_pred CCCCeeEEEecCCCEEEEEe
Q 004270 314 SAPPLCIRFYANGRHILSAG 333 (764)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~ 333 (764)
.+...++.+++-.++++...
T Consensus 330 pG~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTY 349 (463)
T ss_pred CcceeeeeecCccceEEEEe
Confidence 55666777777555555443
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=9.1e-07 Score=92.34 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=137.6
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..+++++++ +++++.|+.+|.|++++.+... ...+ .|... +-+|.+++||+.||+|.|-.+-
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------~~s~~------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------DHSSS------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------ccccc------ccCCceEEEecCCCcEEEeecc
Confidence 344455554 6899999999999999987554 2222 34333 6689999999999999999999
Q ss_pred CCCeeeeEecCcceEEEEEeec-----CCEEEEEeCCCeEEEEEccCC--eEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270 505 GRDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVVAL--RMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~-----~~~la~~~~d~~i~v~d~~~~--~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
+.+....+..+.++.+++++|+ .+.+++|+.-| +.++.-.=. +.-..+..-.++|.++.|. |.++|-++.
T Consensus 102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 9999999999999999999998 57889998888 777653211 1111355567899999995 779998887
Q ss_pred CCcEEEEEcCccceEEEEeeCCc-------eEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 578 DGSLRIWDVILARQIDAIHVDVS-------ITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 578 dg~i~iwd~~~~~~~~~~~~~~~-------v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
+| |+|||+.+++.+..++.+.. ...+.|.++. .|+.|=.| +|++-.++.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d--~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD--SVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC--eEEEEEEec
Confidence 77 99999999998887765432 5678887664 45566556 488888873
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=4.5e-05 Score=72.98 Aligned_cols=243 Identities=18% Similarity=0.200 Sum_probs=149.2
Q ss_pred eEEEEEcC-CCCEEEEEEcCCe-EEEEEccCCceEEEEeccCCCC--EEEEEEeeCCCCEEEEE-----eCCCcEEEEEC
Q 004270 184 ISSCVSSP-ALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSMRGA--VTALAFSSDGQPLLASG-----ASSGVISIWNL 254 (764)
Q Consensus 184 i~~~~~sp-~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~--v~~l~fs~d~~~~l~sg-----~~dg~i~iwd~ 254 (764)
...++.+| ....++.+-.-|+ ..+||..+++....+... .+. .-.-.|++||+ +|++. +..|.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-PGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-CCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEEC
Confidence 34678888 5567777776664 789999999988877654 222 22578999999 55554 24589999999
Q ss_pred C-CceeeeeeecccccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCc--------eeeEe--c--cCCC
Q 004270 255 E-KRRLQSVIREAHDNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDP--------RLLRF--R--SGHS 314 (764)
Q Consensus 255 ~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~--------~~~~~--~--~~h~ 314 (764)
. +.+.+..+. .|.-....+.+.||++.|+.+.. .|..++ ++++..... .++.. + .-|.
T Consensus 85 ~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 85 ARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred cCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 8 557777776 67667788999999987777642 133333 223222111 22221 2 2366
Q ss_pred CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (764)
..+..+++.++|..++..-..|.-. +..-++.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~------------------------------------------------~~~PLva 194 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPG------------------------------------------------DAPPLVA 194 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCC------------------------------------------------ccCCeEE
Confidence 6777788777775444433222100 0011222
Q ss_pred eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceecCccccccccc
Q 004270 395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAH 473 (764)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h 473 (764)
.+..+..+.......... ......+-+++++++|.++++.+- .|.+.+||..++..+....
T Consensus 195 ~~~~g~~~~~~~~p~~~~--------~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---------- 256 (305)
T PF07433_consen 195 LHRRGGALRLLPAPEEQW--------RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---------- 256 (305)
T ss_pred EEcCCCcceeccCChHHH--------HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----------
Confidence 232222233222221110 012378999999999998866665 5689999999999887643
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCeE
Q 004270 474 NGEVVGVACDSTNTLMISAGYHGDI 498 (764)
Q Consensus 474 ~~~v~~l~~~~~~~~l~s~~~dg~v 498 (764)
-..+.+++..+++ ++++.+. |.+
T Consensus 257 l~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 257 LPDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred cCceeeeeecCCc-eEEeCCC-ccE
Confidence 3457778877776 5666554 443
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=3.8e-08 Score=102.83 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=121.5
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC-cE
Q 004270 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG-VI 249 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg-~i 249 (764)
.+...+|..|....+|++|+-+.+.|++|+..|.|+++++.+|........| +.+|+-+.-+.||...|.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchH
Confidence 3455677888999999999999999999999999999999999998888776 889999999999994444444443 57
Q ss_pred EEEECCC-ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 250 ~iwd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
.+|++.+ +...+.+. .-.++.|+.....-+.|.......+||+.+.......+.-..+....-++..|+|+..+
T Consensus 1170 aLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999864 23333333 34577887765444445444568899988775332322222233334478889998877
Q ss_pred EEEEeCCCcEEEEEeecccccccc
Q 004270 329 ILSAGQDRAFRLFSVIQDQQSREL 352 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~~~~~~ 352 (764)
++- || .+||++..+.+..+
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhh
Confidence 764 66 47998776544443
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=0.00024 Score=78.44 Aligned_cols=276 Identities=12% Similarity=0.101 Sum_probs=166.8
Q ss_pred CCCcceEEEEEeCCeEEEEECCe-----EEEEec---Cc---eEEE--ecccccceEEEEE--eCCEEEEEecCCcEEEE
Q 004270 54 QLPKKIRALASYRDYTFAAYGNH-----IAVVKR---AH---QVAT--WSRHSAKVNLLLL--FGEHILSIDIDGNMFIW 118 (764)
Q Consensus 54 ~~~~~I~~~~~~~~~~~~a~g~~-----i~vw~~---~~---~~~~--~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vW 118 (764)
.|++.-.+...+|...+++++.. +..+.. ++ .... ...-.+.|.++.+ +++.++.+..+|.|.+-
T Consensus 16 ~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilv 95 (1265)
T KOG1920|consen 16 AGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILV 95 (1265)
T ss_pred CCCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEE
Confidence 34444566777788888888733 333322 22 1111 1223358888887 78889999999999998
Q ss_pred EccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC----CC-------------------CeEEE
Q 004270 119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI----ST-------------------KKKLY 175 (764)
Q Consensus 119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~----~~-------------------~~~~~ 175 (764)
|.++... .....-...+..+.++|+. ..++..+..+++.+-.- -. |+.-.
T Consensus 96 d~et~~~-----eivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeT 168 (1265)
T KOG1920|consen 96 DPETLEL-----EIVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKET 168 (1265)
T ss_pred cccccce-----eeeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccce
Confidence 8777654 2222345566777899999 78888888787766432 01 11111
Q ss_pred EEcCC---------------------CCCeEEEEEcCCCCEEEEE-----EcCCeEEEEEccCCceEEEEeccCCCCEEE
Q 004270 176 EFKGW---------------------GSSISSCVSSPALDVVAVG-----CSDGKIHVHNVRYDEELVTFTHSMRGAVTA 229 (764)
Q Consensus 176 ~~~~h---------------------~~~i~~~~~sp~~~~la~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 229 (764)
.|+|. .+.=+.+.|--||+++|+. .....|++||-+ | .+........+.-.+
T Consensus 169 qfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~ 246 (1265)
T KOG1920|consen 169 QFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHS 246 (1265)
T ss_pred eeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccc
Confidence 22211 1122458899999999983 233789999966 3 333333333455678
Q ss_pred EEEeeCCCCEEEEEe---CCCcEEEEECCCc---eeeeeeecccccCeeEEEEecCCCEEEE---EcCCCcEEEEEecCC
Q 004270 230 LAFSSDGQPLLASGA---SSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMS---ASADNSIKMWIFDTT 300 (764)
Q Consensus 230 l~fs~d~~~~l~sg~---~dg~i~iwd~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s---~~~d~~i~vw~~~~~ 300 (764)
++|-|.|. ++++-. .|+.|.++.-+.- ....... .....|..++|+.++..|++ ......|++|-+..-
T Consensus 247 LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 247 LSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 99999998 666643 4667999984322 1111122 23344999999999998887 444455999965432
Q ss_pred CCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEee
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~ 344 (764)
.+.+...+.-..... +.|+| ....+..-..+|...+++..
T Consensus 325 --hWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 325 --HWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred --EEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 222222222222222 78888 33344444467777776653
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=5.8e-06 Score=85.37 Aligned_cols=197 Identities=19% Similarity=0.247 Sum_probs=123.5
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce---
Q 004270 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY-EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE--- 215 (764)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~--- 215 (764)
+.-.++.-.. .+++.|+.-|.+++|+-..++... ...+-.+.+..+..|++..++|.|+..|.|.++-+..+..
T Consensus 36 v~lTc~dst~--~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDATE--EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecCC--ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3334445555 689999999999999966655433 2333456677788999999999999999999998876432
Q ss_pred --EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270 216 --LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (764)
Q Consensus 216 --~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 289 (764)
+..+...|+..|++++|++++. .+++|...|.|.+-.+... .....+. .-.+.|..+.+.. +.+|++.. -
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q-~~LLVStl-~ 189 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQ-SYLLVSTL-T 189 (726)
T ss_pred eeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeeccc-ceehHhhh-h
Confidence 2223333578999999999999 8999999999999888772 1111222 3456777777653 33343333 2
Q ss_pred CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC----CCEEEEEeCCCcEEEEEeecc
Q 004270 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~i~i~d~~~~ 346 (764)
+. .+++.+..+ .+.+.......-.-...+|.|. .+-.+.++.-| .|+|...-.
T Consensus 190 r~-~Lc~tE~et--i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~ 246 (726)
T KOG3621|consen 190 RC-ILCQTEAET--ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFA 246 (726)
T ss_pred hh-heeecchhH--HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecc
Confidence 22 233333221 1111111111112345566664 44566666666 788877543
No 323
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.61 E-value=0.00019 Score=77.13 Aligned_cols=176 Identities=16% Similarity=0.147 Sum_probs=110.2
Q ss_pred EEEEccCCCEEEEEecCC------------------cEEEEECcCCcccceecCccccc--cccccCcE-EEEEECCCCC
Q 004270 429 ACTISACGNFAVLGTAGG------------------WIERFNLQSGISRGSYLDMSERS--NYAHNGEV-VGVACDSTNT 487 (764)
Q Consensus 429 ~~~~s~~g~~l~~g~~~g------------------~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v-~~l~~~~~~~ 487 (764)
+.++.+.+..+++++.++ .+.-+|..+|+.+-.+....... .......+ ..+. .-++.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~ 299 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGK 299 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCC
Confidence 345666778888887765 79999999999988764211000 00111111 1111 11332
Q ss_pred ---EEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE------------------eCCCeEEEEEccC
Q 004270 488 ---LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV------------------ADDLVIRLFDVVA 546 (764)
Q Consensus 488 ---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~------------------~~d~~i~v~d~~~ 546 (764)
.++.++.+|.+...|..+++.+....... ..++.+| ..+.++ ..+|.+.-+|+.+
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 57778889999999999999888765431 1123333 333332 2367888999999
Q ss_pred CeEEEEeecCC--------CCe--eEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEE--EEEcCCCC
Q 004270 547 LRMVRKFEGHT--------DRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD 611 (764)
Q Consensus 547 ~~~~~~~~~h~--------~~i--~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~--l~~sp~g~ 611 (764)
++.+-+..... .+. ..+.. .+..|+.++.||.|+.+|..+|+.+..++....+.+ +.+..+|+
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 98877765331 111 12222 456788889999999999999999999887665433 23344553
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.60 E-value=4.7e-05 Score=81.75 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=114.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC------eE--EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS------IS--SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM 223 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~------i~--~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~ 223 (764)
+.+++++.++.|.-.|.++|+.+.+++..... +. .++.. ++..+++++.+|.|.-+|.++|+.+.++....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 47888988999999999999999887653320 10 01111 22678888899999999999999998887542
Q ss_pred CC----CE-EEEEEeeCCCCEEEEEe---------CCCcEEEEECCCceeeeeeeccccc-------------------C
Q 004270 224 RG----AV-TALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAHDN-------------------A 270 (764)
Q Consensus 224 ~~----~v-~~l~fs~d~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~h~~-------------------~ 270 (764)
.. .+ .+..+. ++ +++.++ .+|.+..+|..+|+.+......... .
T Consensus 141 ~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 141 QVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 11 01 112222 23 455553 3678999999999988877632111 0
Q ss_pred e-eEEEEecCCCEEEEEcCCC------------------cEEEEEecCCCCCceeeEeccCCCC----CCeeEEEe----
Q 004270 271 I-ISLHFFANEPVLMSASADN------------------SIKMWIFDTTDGDPRLLRFRSGHSA----PPLCIRFY---- 323 (764)
Q Consensus 271 v-~~l~~~~~~~~l~s~~~d~------------------~i~vw~~~~~~~~~~~~~~~~~h~~----~v~~i~~~---- 323 (764)
+ ....+.+.+..++.++.++ .+.-+|..+++..+. .....|.. ......+.
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~--~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF--YQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE--eeCCCCCCcccccCCCCeEEeccc
Confidence 1 1234444556777776555 465555554432221 11111211 00111111
Q ss_pred cCCC---EEEEEeCCCcEEEEEeeccccccc
Q 004270 324 ANGR---HILSAGQDRAFRLFSVIQDQQSRE 351 (764)
Q Consensus 324 ~~~~---~l~s~~~dg~i~i~d~~~~~~~~~ 351 (764)
-++. .++.++.+|.+..+|..+++..-.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 1333 567778889999999888765544
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.3e-06 Score=81.99 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=71.8
Q ss_pred EEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC-
Q 004270 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG- 326 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~- 326 (764)
+++.+..+.+....+. .|...|.+++|+|..+ ++..++.++.|++.|+++. ..+.....| ..+.+++|.-|.
T Consensus 175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~----~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS----CVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccc----eeeeheecc-CCceeeeeccCCc
Confidence 5666655555555444 7888999999999877 7888999999999999887 344444455 889999999855
Q ss_pred CEEEEEeCCCcEEEEEeeccc
Q 004270 327 RHILSAGQDRAFRLFSVIQDQ 347 (764)
Q Consensus 327 ~~l~s~~~dg~i~i~d~~~~~ 347 (764)
++|+.|-..|.|.+||++..+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccCceEEEEEccCCC
Confidence 556677788999999987654
No 326
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=2.3e-07 Score=60.09 Aligned_cols=39 Identities=41% Similarity=0.536 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
+++++++++|.+.|.+++|+|++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 478899999999999999999999999999999999997
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.57 E-value=3.7e-05 Score=79.02 Aligned_cols=304 Identities=10% Similarity=0.050 Sum_probs=154.5
Q ss_pred cCCCCEEEEEE---------cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270 190 SPALDVVAVGC---------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (764)
Q Consensus 190 sp~~~~la~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~ 260 (764)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+ .++-.. ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeE
Confidence 68888888742 346799999998665443332 46789999999999 555554 689999998877544
Q ss_pred eeeeccc----------------ccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 261 SVIREAH----------------DNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 261 ~~~~~~h----------------~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
.....+- -+.-.++.|+||+++|+.... +..|+.+.+........ ....+..+.+-
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP 149 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP 149 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC
Confidence 4333220 012345678888877766554 33444443221110000 00112222221
Q ss_pred cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
--|..... -.+.++++.+++... +....
T Consensus 150 k~G~~np~----v~l~v~~~~~~~~~~-~~~~~----------------------------------------------- 177 (353)
T PF00930_consen 150 KAGDPNPR----VSLFVVDLASGKTTE-LDPPN----------------------------------------------- 177 (353)
T ss_dssp BTTS---E----EEEEEEESSSTCCCE-E---H-----------------------------------------------
T ss_pred CCCCcCCc----eEEEEEECCCCcEEE-eeecc-----------------------------------------------
Confidence 12211111 124455554433210 00000
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECcCCcccceecCccccccccccCcEE
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
........+..+.|+++++.+++...+ ..+.++|..++.......... .+--..-.
T Consensus 178 ---------------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~ 238 (353)
T PF00930_consen 178 ---------------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYD 238 (353)
T ss_dssp ---------------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSS
T ss_pred ---------------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----Ccceeeec
Confidence 000123567788899998844443322 256677777766544442111 01111122
Q ss_pred EEEEC-CCC-CEEEEEeCCCe--EEEEECCCCCeeeeEecCcceEE-EEEeecCCEEEEEe-C----CCeEEEEEccCCe
Q 004270 479 GVACD-STN-TLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLLATVA-D----DLVIRLFDVVALR 548 (764)
Q Consensus 479 ~l~~~-~~~-~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~i~~-~~~s~~~~~la~~~-~----d~~i~v~d~~~~~ 548 (764)
...+. +++ .++.....||. |.+++..++.......+.-.|.. +.+.++++.+...+ . ...++..++..+.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 44443 555 44445556775 55556566655544445566644 67788877665443 3 2356666777334
Q ss_pred EEEEeecCCCCeeEEEEcCCCcEEEEE
Q 004270 549 MVRKFEGHTDRITDFCFSEDGKWLLSS 575 (764)
Q Consensus 549 ~~~~~~~h~~~i~~l~~s~dg~~l~s~ 575 (764)
.+..+....+.-..+.|||+|++++-.
T Consensus 319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 319 EPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CeEeccCCCCCceEEEECCCCCEEEEE
Confidence 455666444433689999999988743
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=1.9e-06 Score=90.05 Aligned_cols=111 Identities=21% Similarity=0.322 Sum_probs=89.8
Q ss_pred EEEEEcCCCCEEEEEEc----CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270 185 SSCVSSPALDVVAVGCS----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (764)
Q Consensus 185 ~~~~~sp~~~~la~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~ 260 (764)
+-..|+|...++|+++- .|.|.||- ++|++-..... +-.+++++|+|..- +|+.|-.-|.+.+|...+.+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCceee
Confidence 34578999999998863 48898884 66775544433 23467899999876 8999999999999998776655
Q ss_pred eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 261 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
.... .|..+|..+.|+++|..|+++..-|.+.+|.++..
T Consensus 95 tv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 95 TVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred eecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 5554 89999999999999999999999999999998854
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=3.4e-06 Score=88.31 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=86.4
Q ss_pred EEEEEEeeCCCCEEEEEe----CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC
Q 004270 227 VTALAFSSDGQPLLASGA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 302 (764)
-+-.+|+|..+ ++++++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|.....
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-- 91 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-- 91 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc--
Confidence 34467888887 787776 468888885 5666544433 2234677999999988999988999999966544
Q ss_pred CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
..-.....|..++..+.|+++|..++++..-|.+.+|....
T Consensus 92 --e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 --ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred --eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 34445568999999999999999999999999999998764
No 330
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=2.9e-07 Score=86.18 Aligned_cols=128 Identities=15% Similarity=0.227 Sum_probs=98.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEEC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~ 503 (764)
+.|-++.|...++.+..|+.+|.|..+|++.+..-..... .-.-|...|+++..-. ++++|++.+.+|+|++||.
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a----~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA----QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce----EEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 5666777777889999999999999999987522111000 0026889999998776 7889999999999999999
Q ss_pred CCCCe---eeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 004270 504 KGRDL---KSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (764)
Q Consensus 504 ~~~~~---~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h 556 (764)
+--++ +..+++| ..-.-+.+.+....++++++|...|||.++.+.++.++.-.
T Consensus 329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 86666 7777766 23334556677889999999999999999999999887643
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.1e-05 Score=81.01 Aligned_cols=197 Identities=13% Similarity=0.223 Sum_probs=136.0
Q ss_pred cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEcCCCCEEEEEEcCC-----eEEEEEccCC-
Q 004270 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSPALDVVAVGCSDG-----KIHVHNVRYD- 213 (764)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~~- 213 (764)
...++++.+ ..++.|+.+|.|.++| ++.+.++.|+.+... |..+-...+..+|++-+.|+ .++||+++.-
T Consensus 27 ~isc~~s~~--~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSST--GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCC--ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 445577777 7899999999999998 466777889888877 44444444446777766653 5999998732
Q ss_pred -----ceE---EEEe--cc-CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC---CceeeeeeecccccCeeEEEEecC
Q 004270 214 -----EEL---VTFT--HS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLE---KRRLQSVIREAHDNAIISLHFFAN 279 (764)
Q Consensus 214 -----~~~---~~~~--~~-~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~---~~~~~~~~~~~h~~~v~~l~~~~~ 279 (764)
.++ +.+. .+ ...++.+++.+.+-+ .+|+|-.+|.|..+.-+ .......+.....++|+++.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 223 1121 11 246889999999877 89999999999998532 111122222234579999999999
Q ss_pred CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
+..++.+..-..|.+|.+.... ........|..++.|..+++....+++++... +.+|+...
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~ 244 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGSEF-LYFYDSDG 244 (933)
T ss_pred CceeEEEEecceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecCce-EEEEcCCC
Confidence 8874444445679999887432 23455678888999999998665566666554 88888653
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=2.7e-06 Score=89.94 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=137.4
Q ss_pred eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Q 004270 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG 181 (764)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 181 (764)
++..++.|+-...+...|+.+.+. .+........ ..++--++ +.+.+|...|+|.+-|.++.+.++++..|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e----~r~~~v~a~~--v~imR~Nn--r~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE----TRTTNVSASG--VTIMRYNN--RNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeeccccee----eeeeeccCCc--eEEEEecC--cEEEeecccceEEeecCCcCceeeeeeccc
Confidence 467788888888899999988877 4444433333 22333344 579999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEEc---------CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270 182 SSISSCVSSPALDVVAVGCS---------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw 252 (764)
+.|..+. -.|+.|++++. |.-|+|||++.-+.+.-+..+ .+ ..-+.|.|.=...+++.+..|...+-
T Consensus 218 ~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~-P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 218 GSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YG-PQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cC-chhhhhcccccceEEEEecccceeec
Confidence 9998655 45788888765 445899999988776655543 22 36678888765578888999999999
Q ss_pred E---CCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270 253 N---LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 253 d---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (764)
| +.+...-..........+.++++++++..++.+..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9 4433222222223455699999999999999999999999996
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.49 E-value=0.00012 Score=75.18 Aligned_cols=287 Identities=11% Similarity=0.083 Sum_probs=156.7
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccC-------C-----
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG-------H----- 313 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~-------h----- 313 (764)
.+.+.++|+++++...... . ...+....|+|+|+.++... ++.|.+++.... ....+.. .| -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~~lT~-dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QETQLTT-DGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEEESES---TTTEEESB--HHH
T ss_pred ceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEe-cCceEEEECCCC--CeEEecc-ccceeEEcCccceec
Confidence 4679999999987666554 2 67889999999999998886 567877754333 1111111 11 0
Q ss_pred ----CCCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270 314 ----SAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (764)
Q Consensus 314 ----~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (764)
-+.-..+.|+||+++|+.... +..++.+.+........ ..
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------------------~y--------------- 140 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------------------QY--------------- 140 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------------------SS---------------
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------------------cC---------------
Confidence 123467889999999987653 45555555432211100 00
Q ss_pred ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCcc
Q 004270 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMS 466 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~ 466 (764)
..+..+.+-.-| ..+. .+.++++.+++....-. .
T Consensus 141 ------------------------------------p~~~~~~YPk~G------~~np~v~l~v~~~~~~~~~~~~~-~- 176 (353)
T PF00930_consen 141 ------------------------------------PEVESIRYPKAG------DPNPRVSLFVVDLASGKTTELDP-P- 176 (353)
T ss_dssp -------------------------------------EEEEEE--BTT------S---EEEEEEEESSSTCCCEE-----
T ss_pred ------------------------------------CcccccccCCCC------CcCCceEEEEEECCCCcEEEeee-c-
Confidence 001111110001 1111 35667777766542111 0
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEe--CC---CeEEEEECCCCCeeeeEec--Cc---ceEEEEEe-ecCC-EEEEEe
Q 004270 467 ERSNYAHNGEVVGVACDSTNTLMISAG--YH---GDIKVWDFKGRDLKSRWEV--GC---SLVKIVYH-RVNG-LLATVA 534 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~--~d---g~v~iwd~~~~~~~~~~~~--~~---~i~~~~~s-~~~~-~la~~~ 534 (764)
.....-...+..+.|.++++.++..- .+ ..+.+.|..++........ .. ......+. +++. ++....
T Consensus 177 -~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 177 -NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred -cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence 00013355788999999988444333 22 2466778877655443332 22 22355554 5554 455555
Q ss_pred CCC--eEEEEEccCCeEEEEeecCCCCeeE-EEEcCCCcEEE-EEeCC----CcEEEEEcCccceEEEEeeCCceE-EEE
Q 004270 535 DDL--VIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKWLL-SSGMD----GSLRIWDVILARQIDAIHVDVSIT-ALS 605 (764)
Q Consensus 535 ~d~--~i~v~d~~~~~~~~~~~~h~~~i~~-l~~s~dg~~l~-s~s~d----g~i~iwd~~~~~~~~~~~~~~~v~-~l~ 605 (764)
.+| .|.+++..++. .+.+....-.|+. +.++++++.|. ++..+ ..|..-++..+..+..+....... .+.
T Consensus 256 ~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~ 334 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS 334 (353)
T ss_dssp TTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred cCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence 666 45556666665 4466655566755 67888877665 55442 355555666345556665555544 999
Q ss_pred EcCCCCeEEEEEeC
Q 004270 606 LSPNMDVLATAHVD 619 (764)
Q Consensus 606 ~sp~g~~lat~~~d 619 (764)
|||+|++++..+..
T Consensus 335 ~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 335 FSPDGKYYVDTYSG 348 (353)
T ss_dssp E-TTSSEEEEEEES
T ss_pred ECCCCCEEEEEEcC
Confidence 99999999887654
No 334
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.48 E-value=0.00097 Score=71.85 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeE---E-------EEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSIS---S-------CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~i~---~-------~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
+.|++++.++.|.-.|.++|+.+.++.... ..+. + +++ .+..+++++.|+.+.-.|.++|+.+....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 578888889999999999999998876421 1111 1 122 23567788899999999999999988765
Q ss_pred ccCCC---CEEEEEEeeCCCCEEEEEe------CCCcEEEEECCCceeeeeee
Q 004270 221 HSMRG---AVTALAFSSDGQPLLASGA------SSGVISIWNLEKRRLQSVIR 264 (764)
Q Consensus 221 ~~~~~---~v~~l~fs~d~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~ 264 (764)
..... .+++--..-++. ++++. .+|.|..+|.++|+.+-...
T Consensus 148 ~~~~~~~~~~tssP~v~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccccccCCcEEECCE--EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 32111 122211112443 44443 26899999999999887765
No 335
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.47 E-value=0.0042 Score=67.55 Aligned_cols=532 Identities=14% Similarity=0.110 Sum_probs=267.7
Q ss_pred eCCeEEEEECCeEEEEecC-ceEEE--ecccccceEEEE---EeCCEEEEEecCCcEEEEEcc-CCcccccc-eeeEecC
Q 004270 65 YRDYTFAAYGNHIAVVKRA-HQVAT--WSRHSAKVNLLL---LFGEHILSIDIDGNMFIWAFK-GIEENLAP-VGHVKLD 136 (764)
Q Consensus 65 ~~~~~~~a~g~~i~vw~~~-~~~~~--~~~h~~~v~~l~---~~g~~l~s~~~dg~v~vWd~~-~~~~~~~~-~~~~~~~ 136 (764)
+|.+-.+..|..-.+|-.+ ..... +.+....+.+-. .+|.+.+.++.+|.+...-+. +++..... .+.....
T Consensus 225 ~~~gGvlV~ge~~I~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lg 304 (1096)
T KOG1897|consen 225 SPIGGVLVIGEEFIVYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLG 304 (1096)
T ss_pred CCCceEEEEeeeEEEEeeCCceeEecccccCCceEEEcccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecC
Confidence 3445555566664445433 33332 233444444433 378889999999998777666 44432221 1222234
Q ss_pred CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEE-------EEEcCCCCCeEEEEEcCC----CCEEEEEE---cC
Q 004270 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL-------YEFKGWGSSISSCVSSPA----LDVVAVGC---SD 202 (764)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~h~~~i~~~~~sp~----~~~la~g~---~d 202 (764)
...+.++...-+. ..+++||.-|.=++-.+.+..-. .++.. -++|..++.-.. +..+++++ .|
T Consensus 305 e~siassi~~L~n--g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~N-LgPI~Dm~Vvd~d~q~q~qivtCsGa~kd 381 (1096)
T KOG1897|consen 305 ETSIASSINYLDN--GVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVN-LGPIVDMCVVDLDRQGQGQIVTCSGAFKD 381 (1096)
T ss_pred CcchhhhhhcccC--ceEEEeccCCceeeEEccccCCCCchhhhhhhccc-ccceeeEEEEeccccCCceEEEEeCCCCC
Confidence 4444555544444 58999999887777776543322 33333 457777766432 23455443 47
Q ss_pred CeEEEEEccCCc-eEEEEeccCCCCEEEEE--EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEec-
Q 004270 203 GKIHVHNVRYDE-ELVTFTHSMRGAVTALA--FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA- 278 (764)
Q Consensus 203 g~i~iwd~~~~~-~~~~~~~~~~~~v~~l~--fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~- 278 (764)
|++++..-.-+- .+.......-..+..+. +++.-..+++.+-. +.-++..+... ...+...+-......+..+.
T Consensus 382 gSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e-~ee~~~~gf~~~~~Tif~S~i 459 (1096)
T KOG1897|consen 382 GSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFI-SETRVLNISEE-VEETEDPGFSTDEQTIFCSTI 459 (1096)
T ss_pred CcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEec-cceEEEEEccc-eEEeccccccccCceEEEEcc
Confidence 999988643222 22233322134566666 44433334544432 33444444322 22222112222233333322
Q ss_pred CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhh
Q 004270 279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358 (764)
Q Consensus 279 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (764)
.++.|+-.. .+.||+++-... .... .....++....+.+...++.++.++.+...++.... .++..+..
T Consensus 460 ~g~~lvQvT-s~~iRl~ss~~~------~~~W-~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~-- 528 (1096)
T KOG1897|consen 460 NGNQLVQVT-SNSIRLVSSAGL------RSEW-RPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKE-- 528 (1096)
T ss_pred CCceEEEEe-cccEEEEcchhh------hhcc-cCCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeehe--
Confidence 222332222 234666643211 1111 112333444444466677778777777777665544 22222111
Q ss_pred HHHhhccchhhhhccCceeEeeecccccccc--cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC
Q 004270 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDW--CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 436 (764)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 436 (764)
-...+.+++.++..+... ..++.+-..+..+.+.-.++....-+.......-+..+--.++-.|.
T Consensus 529 -------------~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 529 -------------FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred -------------ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 112455555554432221 12333333344444443443333222222222334556666777778
Q ss_pred CEEEEEecCCcEEEEECc--CCcccce----ecCcccc------------------------------------------
Q 004270 437 NFAVLGTAGGWIERFNLQ--SGISRGS----YLDMSER------------------------------------------ 468 (764)
Q Consensus 437 ~~l~~g~~~g~i~i~~~~--~~~~~~~----~~~~~~~------------------------------------------ 468 (764)
.+|.++..||.+..|.++ +|..... +...+..
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~ 675 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHM 675 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhh
Confidence 999999999988776554 3322111 0000000
Q ss_pred ---------------------------------ccccccCcEEEEEECCCCCEEEEEeCC--------------CeEEEE
Q 004270 469 ---------------------------------SNYAHNGEVVGVACDSTNTLMISAGYH--------------GDIKVW 501 (764)
Q Consensus 469 ---------------------------------~~~~h~~~v~~l~~~~~~~~l~s~~~d--------------g~v~iw 501 (764)
....-......+++.+....+.+.+.. ..++++
T Consensus 676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred cccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEe
Confidence 000001112223333322222222210 125555
Q ss_pred ECCCCCeeeeEecC-----cceEEEEEeec-CCEEEEEeC----------CCeEEEEEccCCeEEEEeecC--CCCeeEE
Q 004270 502 DFKGRDLKSRWEVG-----CSLVKIVYHRV-NGLLATVAD----------DLVIRLFDVVALRMVRKFEGH--TDRITDF 563 (764)
Q Consensus 502 d~~~~~~~~~~~~~-----~~i~~~~~s~~-~~~la~~~~----------d~~i~v~d~~~~~~~~~~~~h--~~~i~~l 563 (764)
|-++.+.+...+.. ..+.++.|..| +.++++|.. .|.|.||....++.++....+ .+.+.++
T Consensus 756 D~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL 835 (1096)
T KOG1897|consen 756 DQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL 835 (1096)
T ss_pred cCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeeh
Confidence 55555544444333 34555568777 778888863 588999988774444433322 3455555
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcCccceEEE-EeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWDVILARQIDA-IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.-- +|++||. -...|++|+..+.+.++. -....++..+...-.|+.+|+|..-+ ++.+-..+
T Consensus 836 ~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~y~ 898 (1096)
T KOG1897|consen 836 VEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQYK 898 (1096)
T ss_pred hhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEEEe
Confidence 432 6777764 467899999998855543 34456688888888999999998776 46665443
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=5.6e-05 Score=80.03 Aligned_cols=207 Identities=15% Similarity=0.182 Sum_probs=137.3
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC-eeEEEEecCCCEEEEEcCCCc-----EEEEEecCCCCC--
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-IISLHFFANEPVLMSASADNS-----IKMWIFDTTDGD-- 303 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~-- 303 (764)
|++.+. .++.|+.+|.|.+.+ +.-+.+..+. ++... |..+....+..+|++.+.|+. +++|+++..++.
T Consensus 31 ~~s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG-SVVIGTADGRVVILN-SSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc-eEEEeeccccEEEec-ccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 455666 899999999999988 3445556666 66666 565655555578888887754 899999876332
Q ss_pred ceee---Eec----cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270 304 PRLL---RFR----SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (764)
Q Consensus 304 ~~~~---~~~----~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (764)
+.++ +.. .....++.+++.+.+-+.++.|-.+|.|..+.-. ..+....
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs---------------------- 162 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS---------------------- 162 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc----------------------
Confidence 3444 111 1235678899999998999999999988877421 1111000
Q ss_pred eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC
Q 004270 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (764)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~ 456 (764)
..........+|+.+++..++..++.......|.+|.+...
T Consensus 163 ---------------------------------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 163 ---------------------------------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred ---------------------------------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 00111123489999999999988555555668999999844
Q ss_pred cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 004270 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 513 (764)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 513 (764)
.+..... ..|...+.|..+++....+++++. ..+.+|+.+...+...+.
T Consensus 204 ~p~~~~l-------d~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 204 TPSLKVL-------DNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred Ccceeee-------ccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 4222212 377888999999876664555554 578999988666655555
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=0.0009 Score=74.16 Aligned_cols=242 Identities=13% Similarity=0.155 Sum_probs=142.3
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
.+.|.++.|..+.. -++.+...|.|.+-|.++......- .-.+.|.+++|+||+..++..+.++++.+-..+-.
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~--- 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDEELLALITGRQTLLFMTKDFE--- 141 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCCcEEEEEeCCcEEEEEecccc---
Confidence 35899999999988 6777888999999988776543322 35678999999999999999988888776533211
Q ss_pred ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (764)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (764)
++....-+ ..-.+.+ ..+..|..+.=.-+.-..++....... .
T Consensus 142 --~i~E~~L~------~d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~--------------~-------------- 184 (1265)
T KOG1920|consen 142 --PIAEKPLD------ADDERKS-KFVNVGWGRKETQFRGSEGRQAARQKI--------------E-------------- 184 (1265)
T ss_pred --chhccccc------ccccccc-ccceecccccceeeecchhhhcccccc--------------c--------------
Confidence 11110001 0111122 223333222111111111100000000 0
Q ss_pred cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-----ecCCcEEEEECcCCcc
Q 004270 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGIS 458 (764)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~~g~i~i~~~~~~~~ 458 (764)
...........+.-++++|--||.++++. .....|++||.. |..
T Consensus 185 ------------------------------~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L 233 (1265)
T KOG1920|consen 185 ------------------------------KEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL 233 (1265)
T ss_pred ------------------------------ccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh
Confidence 00000000112444678999999999883 333689999987 433
Q ss_pred cceecCccccccccccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCC---CCeeeeEecC-cceEEEEEeecCCEEE
Q 004270 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKG---RDLKSRWEVG-CSLVKIVYHRVNGLLA 531 (764)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~---~~~~~~~~~~-~~i~~~~~s~~~~~la 531 (764)
-..-. ...+.-.+++|-|.|..+++-. .|+.|.++.-+. ++....+... .++..++|+.++..||
T Consensus 234 ns~se--------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 234 NSTSE--------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred hcccC--------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 22211 3334456899999999888765 566788887442 2222222333 3489999999999999
Q ss_pred E---EeCCCeEEEEEccCC
Q 004270 532 T---VADDLVIRLFDVVAL 547 (764)
Q Consensus 532 ~---~~~d~~i~v~d~~~~ 547 (764)
+ ......|++|-+.+.
T Consensus 306 v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecccccceEEEEEecCe
Confidence 8 455566999987764
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.43 E-value=3.2e-05 Score=80.09 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=122.5
Q ss_pred ceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--
Q 004270 95 KVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-- 172 (764)
Q Consensus 95 ~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~-- 172 (764)
..+++...+++|+.|+..|.+.+++-.+++.. ........+.+..+.+|++.| +++.|+..|.|.++-+..+.
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~---~~~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR---KLKNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhh---cccccCccceEEEEEecchhH--hhhhhcCCceEEeehhhccCCC
Confidence 45566667999999999999999999888763 222223455566667889884 68889999999998766532
Q ss_pred -EEEEE---cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc----eEEEEeccCCCCEEEEEEeeCCCCEEEEEe
Q 004270 173 -KLYEF---KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGA 244 (764)
Q Consensus 173 -~~~~~---~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~ 244 (764)
.++.- +.|...|+|++|++++..+.+|...|.|..-.+.+.. ..+.+... .+.|..+.+.. +. +|++..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~q-~~-LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYLQ-SY-LLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeeccc-ce-ehHhhh
Confidence 22221 3478899999999999999999999999999888721 11112121 46777777763 22 444332
Q ss_pred CCCcEEEEECCCceeeeeeeccccc-CeeEEEEecC----CCEEEEEcCCCcEEEEEecCC
Q 004270 245 SSGVISIWNLEKRRLQSVIREAHDN-AIISLHFFAN----EPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~h~~-~v~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~ 300 (764)
. .-.+++.+.++..+.=.....+ .-...+|.|. .+-.+.++.=| .|+|..+..
T Consensus 189 ~--r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~ 246 (726)
T KOG3621|consen 189 T--RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFA 246 (726)
T ss_pred h--hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecc
Confidence 2 2334555544322211111122 1344556554 33444444433 688977654
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.41 E-value=7.3e-06 Score=86.85 Aligned_cols=178 Identities=13% Similarity=0.183 Sum_probs=133.5
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe---EEEEecC--ceEEEecccccceEE
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRA--HQVATWSRHSAKVNL 98 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~---i~vw~~~--~~~~~~~~h~~~v~~ 98 (764)
.+...++.++....+..+|..+.+......-....|+-|.. +++++.+|.+ |.+-|.. +.++++..|++.|.+
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 47788898888888999999998877766443444555544 4555555544 8887754 457789999999999
Q ss_pred EEEeCCEEEEEec---------CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC-
Q 004270 99 LLLFGEHILSIDI---------DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI- 168 (764)
Q Consensus 99 l~~~g~~l~s~~~---------dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~- 168 (764)
+...|+.|++|+. |.-|+|||+...+. +..+.++.+. .-+.|+|.-. ..+++.+..|...+-|.
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~~P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccccCc-hhhhhccccc-ceEEEEecccceeecccc
Confidence 9999999999987 44589999988776 4444444333 3345777654 68999999999999983
Q ss_pred --CCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 169 --STK-KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 169 --~~~-~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
.+. .-++.+...+..+..+.+|++++.+|.|..+|.|.+|.
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 322 22344444466799999999999999999999999997
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.41 E-value=0.00012 Score=74.97 Aligned_cols=279 Identities=12% Similarity=0.099 Sum_probs=143.5
Q ss_pred CCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc-cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (764)
.|+.+.|.++...|+.+...|.+.+|.....+... .........+...+......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 58 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSP------------------------ 58 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS------------------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCC------------------------
Confidence 47889999998899999999999999887654432 11110100000000000000
Q ss_pred eeeCCceEEEEEcccee-----ecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 395 CHMDTAQAYVWRLQNFV-----LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 395 ~~~~~~~~~~w~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
-.+-|+.... .+...........+.|++++.| +=.++++|+.+|.+.+.|++....+..-.-.....
T Consensus 59 -------~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~ 130 (395)
T PF08596_consen 59 -------GKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFL 130 (395)
T ss_dssp --------SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T
T ss_pred -------cceEEehhhCCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecccccccc
Confidence 0011111100 0001111111225899999997 66799999999999999998766655422111001
Q ss_pred cccccCcEEEEEECC-----CC---CEEEEEeCCCeEEEEECCC---CCe----eeeE-ecCcceEEEE-EeecC-----
Q 004270 470 NYAHNGEVVGVACDS-----TN---TLMISAGYHGDIKVWDFKG---RDL----KSRW-EVGCSLVKIV-YHRVN----- 527 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~-----~~---~~l~s~~~dg~v~iwd~~~---~~~----~~~~-~~~~~i~~~~-~s~~~----- 527 (764)
.......++++.|.- |+ -.++.|...|.+.+|.+.- +.. .... ...+++..+. ++.+.
T Consensus 131 ~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 131 SKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESAL 210 (395)
T ss_dssp -SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B
T ss_pred ccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCccc
Confidence 123345678887752 33 4678888999999998751 111 1111 2334555444 22221
Q ss_pred ---------------CEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEc-----CCCcEEEEEeCCCcEEEEEcC
Q 004270 528 ---------------GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS-----EDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 528 ---------------~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s-----~dg~~l~s~s~dg~i~iwd~~ 587 (764)
.-+++...+..++++...+.+...+.....-....+.+- ..+..|++-..+|.|+++.++
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 134555567899999998887766555332233344552 356678888899999999999
Q ss_pred ccceEEEEeeCCc-----eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 588 LARQIDAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 588 ~~~~~~~~~~~~~-----v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
.-+.+..++.+.. +...+++++|+.++..+..+ +.++.+
T Consensus 291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE--~~l~sv 334 (395)
T PF08596_consen 291 SLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE--IQLFSV 334 (395)
T ss_dssp T--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE--EEEEEE
T ss_pred CchHhhcccCCCccccccccccEECCCCCEEEEeCccc--EEEEEE
Confidence 9999988877442 66778899999888776654 444443
No 341
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.35 E-value=0.00056 Score=67.82 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=94.7
Q ss_pred EEeCCCCCCEEEEEeC-C--CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270 144 IMHPDTYLNKVIVGSQ-E--GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 144 ~~~p~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
+|.+++ ++|+.++. + ..+.+.|+.+++..+--.+-........++|+.+.++-......|+-.|+++.+....+.
T Consensus 42 ~ft~dG--~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDG--RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS---EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCC--CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 457777 56666554 4 457777999998877666533333356777888888766666789999999988765555
Q ss_pred ccCCCCEEEEEEee--CCCCEEEEEe----------------------CCCcEEEEECCCceeeeeeecccccCeeEEEE
Q 004270 221 HSMRGAVTALAFSS--DGQPLLASGA----------------------SSGVISIWNLEKRRLQSVIREAHDNAIISLHF 276 (764)
Q Consensus 221 ~~~~~~v~~l~fs~--d~~~~l~sg~----------------------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~ 276 (764)
.+ ...+-...|.. |+. .++-.- ....|.-.|+.+|+....+. -...+..+.|
T Consensus 120 ~p-~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f 195 (386)
T PF14583_consen 120 VP-DDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF 195 (386)
T ss_dssp ---TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred CC-cccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence 54 55565566653 344 333211 12346667888887666655 4567889999
Q ss_pred ecCCCEEEEEcC----CC-cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEE
Q 004270 277 FANEPVLMSASA----DN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 277 ~~~~~~l~s~~~----d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (764)
+|..+.+++=+. +. .-|||-++......+.+.... -...+..=-|.|||..|.-
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEE
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEE
Confidence 997765544332 33 248898887655444443221 1222333346777765543
No 342
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.33 E-value=0.0029 Score=68.24 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=63.9
Q ss_pred CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEE----------EEEeeCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004270 193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTA----------LAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262 (764)
Q Consensus 193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~----------l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~ 262 (764)
+..|.+++.++.|.-.|.++|+.+.++.......+.. +++. ++ .++.++.++.|.-.|.++|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~--~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG--KVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CC--EEEEEcCCCEEEEEECCCCCEEee
Confidence 4577788888999999999999998876432211211 2222 23 466778899999999999998877
Q ss_pred eeccccc---CeeEEEEecCCCEEEEEc------CCCcEEEEEecCCC
Q 004270 263 IREAHDN---AIISLHFFANEPVLMSAS------ADNSIKMWIFDTTD 301 (764)
Q Consensus 263 ~~~~h~~---~v~~l~~~~~~~~l~s~~------~d~~i~vw~~~~~~ 301 (764)
....... .+.+--..-++ .++.+. .+|.|..+|.++++
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc
Confidence 6522111 12211111144 344433 25777777766553
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.0017 Score=67.23 Aligned_cols=279 Identities=11% Similarity=0.123 Sum_probs=181.6
Q ss_pred EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (764)
+.+++..+.+....+. .+ .....+...+++..+..... ...+...+.. .. ........-......+++++.+.
T Consensus 13 ~~v~~~~~~~~~~~~~-~~-~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n--~~~~~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAIS-LG-RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SN--TVTQSLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEee-cC-CCCceeEEcCccCEEEEEeecCceeeecccc--cc--eeeeeccCCCccccceeeCCCCC
Confidence 6666666665555554 22 25667777888754444332 2233333222 11 11111111114556788888777
Q ss_pred EEE-EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEE
Q 004270 328 HIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (764)
Q Consensus 328 ~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (764)
.++ ....+..+.+.|............
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~v---------------------------------------------------- 114 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPV---------------------------------------------------- 114 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeee----------------------------------------------------
Confidence 544 444557888888554433322211
Q ss_pred ccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec---CCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
......++++++++.+.++.. ++.+.+.|..++....... .+. .+ ..++++
T Consensus 115 -----------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-------vG~-~P-~~~a~~ 168 (381)
T COG3391 115 -----------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-------VGN-TP-TGVAVD 168 (381)
T ss_pred -----------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------cCC-Cc-ceEEEC
Confidence 125567899999998888877 6899999999988887743 122 23 899999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCCeee-----eEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEE-e
Q 004270 484 STNTLMISAG-YHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRK-F 553 (764)
Q Consensus 484 ~~~~~l~s~~-~dg~v~iwd~~~~~~~~-----~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~-~ 553 (764)
|+|..++.+. .++.|.+.|........ ..........+.++++|.++.+.... +.+.+.|..++..... .
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 9999666555 78999999987776664 23334566789999999977776554 5999999998887765 2
Q ss_pred ecCCCCeeEEEEcCCCcEEEEEeC-CCcEEEEEcCccceEEEEeeCCc----eEEEEEcCCCC
Q 004270 554 EGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMD 611 (764)
Q Consensus 554 ~~h~~~i~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~----v~~l~~sp~g~ 611 (764)
..-......+.++|+|+++.+... .+.+.+-|..+.+....+..... +..+++.+...
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD 311 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence 222114567899999999887744 48899999998888887665443 66666655443
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.28 E-value=0.00021 Score=74.13 Aligned_cols=183 Identities=16% Similarity=0.138 Sum_probs=100.1
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
+.....+|.+.++ +++-..++.|.++.--.......+. ....+..+-. |.+|...+.+ .|.+||..
T Consensus 69 G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~---------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~ 134 (443)
T PF04053_consen 69 GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK---------LPFSVEKIFG---GNLLGVKSSD-FICFYDWE 134 (443)
T ss_dssp EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--------------SS-EEEEE----SSSEEEEETT-EEEEE-TT
T ss_pred CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc---------CCcccceEEc---CcEEEEECCC-CEEEEEhh
Confidence 3445677888555 5555568889996433333322332 1123444433 7777776654 89999999
Q ss_pred CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC-----------eEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEGHTDRITDFCFSEDGKWLL 573 (764)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-----------~~~~~~~~h~~~i~~l~~s~dg~~l~ 573 (764)
+++.++.+.... +..+.|++++.++|..+.+ .+.|++.+.. .....+..-..+|.+.+|..| -++.
T Consensus 135 ~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiY 211 (443)
T PF04053_consen 135 TGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIY 211 (443)
T ss_dssp T--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEE
T ss_pred HcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEE
Confidence 999999998765 8999999999999999866 6667664432 022233322467999999876 4444
Q ss_pred EEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 574 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
|. .. .++- +..|+.-..-....++.=+...|..+.+.....|.. |..+.++
T Consensus 212 tT-~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~-v~~~~ld 262 (443)
T PF04053_consen 212 TT-SN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN-VISYELD 262 (443)
T ss_dssp E--TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE--
T ss_pred Ec-CC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC-EEEEEEC
Confidence 43 33 6776 555554444444667777788887778888888874 8877764
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.26 E-value=0.00017 Score=78.80 Aligned_cols=191 Identities=19% Similarity=0.214 Sum_probs=124.8
Q ss_pred CCcceEEEEEe--CCeEEEEECCeEEEEecC--ceE------EEecccccc----eEEEEE--eCCEEEEE-ecCCcEEE
Q 004270 55 LPKKIRALASY--RDYTFAAYGNHIAVVKRA--HQV------ATWSRHSAK----VNLLLL--FGEHILSI-DIDGNMFI 117 (764)
Q Consensus 55 ~~~~I~~~~~~--~~~~~~a~g~~i~vw~~~--~~~------~~~~~h~~~----v~~l~~--~g~~l~s~-~~dg~v~v 117 (764)
......+|++. .|..|++-|+.|-|++.. ..+ ..+..-.+. -..|.- +.+.|+.- ...+.|.-
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~ 508 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYK 508 (794)
T ss_pred CCCccceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEE
Confidence 35667778877 589999999999999754 111 011111111 111111 22333332 34567899
Q ss_pred EEccCCcccccceeeEecCCccccEEEEeCCCC-----CCEEEEEeCCCcEEEEeCCCC--eEEEE-Ec--CCCCCeEEE
Q 004270 118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY-----LNKVIVGSQEGSLQLWNISTK--KKLYE-FK--GWGSSISSC 187 (764)
Q Consensus 118 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~l~~~~~dg~i~iwd~~~~--~~~~~-~~--~h~~~i~~~ 187 (764)
-|++.++. +..+..+.... ..-+.|+.. ....++|-.++.+..||.+-. +++.. .+ ......+|+
T Consensus 509 mDLe~GKV----V~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 509 MDLERGKV----VEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred EecCCCcE----EEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 99999999 88888876543 333445421 145778888899999998742 33321 11 124567888
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270 188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (764)
Q Consensus 188 ~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~ 254 (764)
+-+.+| +||+|+.+|.||+|| +.|+...+...+...+|..|..+.||+++|||+ +..|.+++.
T Consensus 584 aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 584 ATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred EecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 888776 799999999999999 455555555445578999999999999666665 467888775
No 346
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.26 E-value=0.0064 Score=60.55 Aligned_cols=170 Identities=19% Similarity=0.195 Sum_probs=84.1
Q ss_pred EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC-----eEEEEECC--CCCe--eeeEecCcce
Q 004270 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDFK--GRDL--KSRWEVGCSL 518 (764)
Q Consensus 448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~v~iwd~~--~~~~--~~~~~~~~~i 518 (764)
|...|+.+|+....+ .-...+..+.|+|....+++-+..| .-|+|-++ .... +..-.....+
T Consensus 170 i~~idl~tG~~~~v~---------~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 170 IFTIDLKTGERKVVF---------EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp EEEEETTT--EEEEE---------EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred EEEEECCCCceeEEE---------ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence 444556665554443 3345667788888766666554333 13566554 2222 2221222455
Q ss_pred EEEEEeecCCEEEEEeC-----CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC--------------
Q 004270 519 VKIVYHRVNGLLATVAD-----DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG-------------- 579 (764)
Q Consensus 519 ~~~~~s~~~~~la~~~~-----d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg-------------- 579 (764)
..=-|.|||..+..-+. +..|.-+|..+++...... ..+...+.-++||+++|-=+.|.
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~ 318 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN 318 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-----------------
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence 66678999987765332 4467777888876543222 22455667789999877433332
Q ss_pred --cEEEEEcCccceEEEEeeCC-----------ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 580 --SLRIWDVILARQIDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 580 --~i~iwd~~~~~~~~~~~~~~-----------~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
.|+++++..++.....++.. .=....|||||++++-.+.-.+...||-+
T Consensus 319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 56778888776554333321 12468999999999888765544555543
No 347
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=4.6e-05 Score=80.06 Aligned_cols=180 Identities=17% Similarity=0.245 Sum_probs=124.6
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (764)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~ 218 (764)
...+++++. ..++.|+.+|.+++.+.. +.. .+...|... ..+|.++++++.||+|.|-.+-+++...+
T Consensus 41 ~is~~av~~----~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 41 AISCCAVHD----KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred HHHHHHhhc----ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 344455554 469999999999999864 444 444455444 66899999999999999999999998888
Q ss_pred EeccCCCCEEEEEEeeC-----CCCEEEEEeCCCcEEEEECCC--ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc
Q 004270 219 FTHSMRGAVTALAFSSD-----GQPLLASGASSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291 (764)
Q Consensus 219 ~~~~~~~~v~~l~fs~d-----~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 291 (764)
+.. ..++.+++++|+ .+ .+++|+..| +.++.-+= .+....+. .-.++|.++.|. |++++-++.+|
T Consensus 109 ~df--~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~lIAWand~G- 180 (846)
T KOG2066|consen 109 YDF--KRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GNLIAWANDDG- 180 (846)
T ss_pred Eec--CCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeee-cCccceEEEEec--CcEEEEecCCC-
Confidence 876 478999999998 33 688899888 77765321 11111233 567899999994 66888888766
Q ss_pred EEEEEecCCCCCceeeEecc-CC-----CCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 292 IKMWIFDTTDGDPRLLRFRS-GH-----SAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 292 i~vw~~~~~~~~~~~~~~~~-~h-----~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
|+|||..... .+.... .+ ......+.|.++. .|+.|=.| +|++..++
T Consensus 181 v~vyd~~~~~----~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQ----RLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred cEEEeccccc----eeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 8999887653 222221 11 1233456776554 45544434 59999887
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.21 E-value=0.011 Score=61.12 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=84.2
Q ss_pred CCEEEEEEeeCCCCEEEEE----eCCCc----EEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270 225 GAVTALAFSSDGQPLLASG----ASSGV----ISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg----~~dg~----i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v 294 (764)
....++.|+....+.+.+- +.+|. -.+|++..++ .+..........|.+++++|+...|+.|+.||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446667765444344432 22333 3456665543 233333457889999999999999999999999999
Q ss_pred EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc
Q 004270 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (764)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~ 349 (764)
||...+. .......-.++.++|+|+|..+++|+..|.+.+||+.-....
T Consensus 286 yD~~~~~------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 286 YDTTRGV------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEcCCCe------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 9876542 222244567899999999999999999999999998755443
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.20 E-value=0.0012 Score=68.56 Aligned_cols=190 Identities=15% Similarity=0.140 Sum_probs=103.2
Q ss_pred cceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 004270 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHV 207 (764)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~i 207 (764)
.+.+.+.........+.++|++ +.+++ +.+|.-.|+.....+....-++ ...+|.+.+ .+|+-..++.|.|
T Consensus 23 l~~k~lg~~~~~p~~ls~npng--r~v~V-~g~geY~iyt~~~~r~k~~G~g-----~~~vw~~~n-~yAv~~~~~~I~I 93 (443)
T PF04053_consen 23 LSVKELGSCEIYPQSLSHNPNG--RFVLV-CGDGEYEIYTALAWRNKAFGSG-----LSFVWSSRN-RYAVLESSSTIKI 93 (443)
T ss_dssp ---EEEEE-SS--SEEEE-TTS--SEEEE-EETTEEEEEETTTTEEEEEEE------SEEEE-TSS-EEEEE-TTS-EEE
T ss_pred EEeccCCCCCcCCeeEEECCCC--CEEEE-EcCCEEEEEEccCCcccccCce-----eEEEEecCc-cEEEEECCCeEEE
Confidence 3345555556667888899999 67777 6778889998555555443332 467888854 5777777889999
Q ss_pred EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270 208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (764)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 287 (764)
+.--..+....+..+ ..+..+-. |. +|...+. +.|.+||+.+++.+..+. .. +|..+.|++++.+++..+
T Consensus 94 ~kn~~~~~~k~i~~~--~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 94 YKNFKNEVVKSIKLP--FSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVT 163 (443)
T ss_dssp EETTEE-TT-----S--S-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-
T ss_pred EEcCccccceEEcCC--cccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEe
Confidence 632233333344432 23444433 77 6666553 489999999999999987 22 489999999999998887
Q ss_pred CCCcEEEEEecCC-------CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270 288 ADNSIKMWIFDTT-------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (764)
Q Consensus 288 ~d~~i~vw~~~~~-------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i 340 (764)
.+ ++.+++.+.. ++..........-...|.+..|..+ .++-.+.. .++.
T Consensus 164 ~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 164 KD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 54 6888876543 1222233333333578888888866 44444433 5555
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.17 E-value=0.00069 Score=69.47 Aligned_cols=242 Identities=11% Similarity=0.125 Sum_probs=129.4
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc---------------------------------------eeeEec
Q 004270 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------------------------------------RLLRFR 310 (764)
Q Consensus 270 ~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~---------------------------------------~~~~~~ 310 (764)
.|+.+.|.++..-|+.+...|.|.+|.+....... .....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998899999999999999776542211 001111
Q ss_pred cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
....++|++++.+. =-+++.|..+|.+.+.|++....+..-....
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~---------------------------------- 127 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRE---------------------------------- 127 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG----------------------------------
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccc----------------------------------
Confidence 22367888888874 4489999999999999997655443311110
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc-----cCC---CEEEEEecCCcEEEEECcC---Cccc
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-----ACG---NFAVLGTAGGWIERFNLQS---GISR 459 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g---~~l~~g~~~g~i~i~~~~~---~~~~ 459 (764)
..........++++.|+ .|+ -.+++|++.|.+.+|.+.- +...
T Consensus 128 --------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~ 181 (395)
T PF08596_consen 128 --------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFS 181 (395)
T ss_dssp ----------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE
T ss_pred --------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceE
Confidence 00000112445555554 223 4688999999999998752 2222
Q ss_pred ceecCccccccccccCcEEEEE-ECCC-C-------------------CEEEEEeCCCeEEEEECCCCCeeeeEecC-cc
Q 004270 460 GSYLDMSERSNYAHNGEVVGVA-CDST-N-------------------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS 517 (764)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~-~~~~-~-------------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~ 517 (764)
..+.. ....+.+.|..+. ++.+ | .-++....+..+|++...+.+..+..... ..
T Consensus 182 v~~~~----~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~ 257 (395)
T PF08596_consen 182 VQFAG----ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFL 257 (395)
T ss_dssp EEEEE----EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EE
T ss_pred EEEee----ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccc
Confidence 12211 0124555555554 3221 1 12344445678999999887766655422 22
Q ss_pred eEEEEE-----eecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC----CCeeEEEEcCCCcEEEEEe
Q 004270 518 LVKIVY-----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 518 i~~~~~-----s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~----~~i~~l~~s~dg~~l~s~s 576 (764)
...+++ ...+..|++-..+|.+++|.+...+.+..+.-+. ..+....++++|..++-.+
T Consensus 258 ~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 258 CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 233444 2356788888999999999999999888877542 2345566777777665544
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.14 E-value=0.0014 Score=62.25 Aligned_cols=217 Identities=13% Similarity=0.112 Sum_probs=117.0
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
...++.++|.|+...++++....+.|...+. +|+.+..+...-.+..-.+++..++.++++.-.++.+.+++++.....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3469999999987658888888999999997 578888876444567889999988877777767899999988554322
Q ss_pred cee--eE-----eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270 304 PRL--LR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (764)
Q Consensus 304 ~~~--~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (764)
... .. ....+...+-.++|.+.++.|+.+-......+|.+........+.
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~----------------------- 156 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF----------------------- 156 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-----------------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-----------------------
Confidence 111 11 112355678999999988888888777777888776422000000
Q ss_pred eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcC
Q 004270 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQS 455 (764)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~ 455 (764)
+.+.... .........+.+++++|.. ++++....+..+..+| .+
T Consensus 157 ---------------------------~~~~~~~-------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~ 201 (248)
T PF06977_consen 157 ---------------------------VSDDQDL-------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQ 201 (248)
T ss_dssp ---------------------------EEE-HHH-------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT
T ss_pred ---------------------------ecccccc-------ccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CC
Confidence 0000000 0000112456777887754 5666666777888888 55
Q ss_pred CcccceecCccc-cccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270 456 GISRGSYLDMSE-RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (764)
Q Consensus 456 ~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 500 (764)
|+.+..+..... ..+...-...-+|+++++|++.+++ .-+..++
T Consensus 202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp --EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 555444432110 0001112467899999999765554 4444444
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.13 E-value=0.0041 Score=64.81 Aligned_cols=51 Identities=16% Similarity=0.327 Sum_probs=39.7
Q ss_pred eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (764)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~ 258 (764)
.|.||+.. |+.+.++.-.. +.+.++.|+.+.. |++-..||.++++|+....
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-CCEEEEEECCCCe--EEEEEcCCEEEEEeCCCce
Confidence 58889864 77888877663 8999999998765 5556689999999986433
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.00072 Score=68.66 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=114.2
Q ss_pred CCEEEEEec---------C-CcEEEEECcCC----cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 436 GNFAVLGTA---------G-GWIERFNLQSG----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 436 g~~l~~g~~---------~-g~i~i~~~~~~----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
..++++|+. . |.|.+|++... ....... .....++|++++-- +++ |+.+. .+.|.+|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~------~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH------STEVKGPVTAICSF-NGR-LVVAV-GNKLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE------EEEESS-EEEEEEE-TTE-EEEEE-TTEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE------EEeecCcceEhhhh-CCE-EEEee-cCEEEEE
Confidence 578888865 2 89999999884 1111111 12557889998876 344 44443 4799999
Q ss_pred ECCCCC-eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC-CeEEEEee--cCCCCeeEEEEcCCCcEEEEEeC
Q 004270 502 DFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 502 d~~~~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~-~~~~~~~~--~h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
++...+ ....-..+.++........++++++|.....+.++..+. .+.+..+. .....++++.|-+|++.++.+..
T Consensus 113 ~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 113 DLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp EEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred EccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence 999888 666655555555555666688999999988888885543 23222322 23456889999877778999999
Q ss_pred CCcEEEEEcCc-------cc----eEEEEeeCCceEEE---EEcCC--CC------eEEEEEeCCCeEE
Q 004270 578 DGSLRIWDVIL-------AR----QIDAIHVDVSITAL---SLSPN--MD------VLATAHVDQNGVY 624 (764)
Q Consensus 578 dg~i~iwd~~~-------~~----~~~~~~~~~~v~~l---~~sp~--g~------~lat~~~d~~~i~ 624 (764)
+|.+.++..+. +. .+..+..+..|+++ ++.|. +. .++.++.+| +|.
T Consensus 193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G-~Ig 260 (321)
T PF03178_consen 193 DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDG-SIG 260 (321)
T ss_dssp TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCC-EEE
Confidence 99999998863 22 33556667778888 66662 22 377777888 466
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.10 E-value=9e-05 Score=76.65 Aligned_cols=186 Identities=15% Similarity=0.107 Sum_probs=125.5
Q ss_pred CCeEEEEEccCCCEEEEE---ecC-CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCe--
Q 004270 425 TAVKACTISACGNFAVLG---TAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD-- 497 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g---~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~-- 497 (764)
..+..-.|+|++..++.- ... ..+.++++.++....... ..+.-...+|+|||+.|+-+. .||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 455667888888765543 222 468999999887766553 233344568999998877554 5665
Q ss_pred EEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (764)
Q Consensus 498 v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s 574 (764)
|.+.|+.++...+.....+.-+.-.|+|||+.++..++.+ .|.+++.+.... ..+....+.-..-.|||||++|+.
T Consensus 264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 6666777777544333334445778999999999887643 677778776655 333333332236789999999997
Q ss_pred EeC-CCc--EEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270 575 SGM-DGS--LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 575 ~s~-dg~--i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
.+. +|. |.+.|+.++..++.+........-+|.++|..+...+...
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 764 344 7777877776666666555567788899998887766543
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.015 Score=60.23 Aligned_cols=284 Identities=14% Similarity=0.118 Sum_probs=179.2
Q ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC-CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (764)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~ 241 (764)
+.+++..+.+....+..+. ....+...+++..+.+.... ..+...+.. .................++.++.+....+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666666665555433 55677888888655544332 245555444 22222211110134567888888886777
Q ss_pred EEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC---CCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (764)
Q Consensus 242 sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (764)
....++.|.+.|..+.+.......+. ....+++.++++.+..+.. ++++.+.|-.+. ........-..+ .
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~----~~~~~~~vG~~P-~ 163 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN----KVTATIPVGNTP-T 163 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC----eEEEEEecCCCc-c
Confidence 77677999999988888887776444 6788999999987776665 455555544333 333332222233 8
Q ss_pred eEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270 319 CIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (764)
Q Consensus 319 ~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (764)
.+++.|+|..++.+. .++.+.+.|.......+ -...
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~------------------------------------------ 200 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG------------------------------------------ 200 (381)
T ss_pred eEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc------------------------------------------
Confidence 999999999776665 67888888854432221 0000
Q ss_pred CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECcCCcccceecCcccccccccc
Q 004270 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHN 474 (764)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (764)
...........+.++++|+++.+.... +.+...|..++.....-.. .+..
T Consensus 201 ---------------------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~ 253 (381)
T COG3391 201 ---------------------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG 253 (381)
T ss_pred ---------------------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC
Confidence 000112455678999999987776555 5899999988877665210 1222
Q ss_pred CcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecCcc----eEEEEEeec
Q 004270 475 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS----LVKIVYHRV 526 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~----i~~~~~s~~ 526 (764)
....+.++|+|+.+.... ..+.+.+-|..+............ +..+++.+.
T Consensus 254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred -CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 566789999999888874 448899999888877776654432 555555543
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.06 E-value=0.007 Score=63.14 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=103.8
Q ss_pred EEEEec-CceEEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccc---eeeEecCCccccEEEEeCCCCC
Q 004270 77 IAVVKR-AHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAP---VGHVKLDDKFTPTCIMHPDTYL 151 (764)
Q Consensus 77 i~vw~~-~~~~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~ 151 (764)
|.+|+. |+.+.+..-..+.|.++.| +...|+....||.++++|+.... .... +.........+....+...|
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G-- 139 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG-- 139 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--
Confidence 777874 5666663222288999998 56789999999999999986444 1110 11111111111111222233
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-EEEEE---cCCCC------CeE-EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270 152 NKVIVGSQEGSLQLWNISTKK-KLYEF---KGWGS------SIS-SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~h~~------~i~-~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
+++-..++.+.+.+--... ....+ ..... ... ...++.+....+....++.+.+.+-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 4444455555444322211 11111 11000 000 022333444444444444454333221111 11
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP 281 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 281 (764)
..+++..|+.||+|+ ++|.-..+|.+.+.+..-.+....+...-......+.|.-+..
T Consensus 215 --~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 215 --SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred --CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 146899999999999 8888888999999987666666666533345667788876543
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.06 E-value=0.0044 Score=62.92 Aligned_cols=218 Identities=14% Similarity=0.172 Sum_probs=126.5
Q ss_pred cEEEEEccCCcccccceeeEecCCccccEEE--Ee--CC--CCCCEEEEEeC----------CCcEEEEeCCCC------
Q 004270 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCI--MH--PD--TYLNKVIVGSQ----------EGSLQLWNISTK------ 171 (764)
Q Consensus 114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~--p~--~~~~~l~~~~~----------dg~i~iwd~~~~------ 171 (764)
.|++.|..+.+. +.++.+.......++ +. .+ +...++++|+. .|.|.++++...
T Consensus 3 ~i~l~d~~~~~~----~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 3 SIRLVDPTTFEV----LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp EEEEEETTTSSE----EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred EEEEEeCCCCeE----EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence 466666666554 444444433322222 22 11 01256777654 288999999884
Q ss_pred -eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 172 -KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 172 -~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
+.++... ..++|++++.- .+ +|+++. .+.|.+|++...+ ....-..+....+.++... ++ +++.|+....+
T Consensus 79 l~~i~~~~-~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv 151 (321)
T PF03178_consen 79 LKLIHSTE-VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSV 151 (321)
T ss_dssp EEEEEEEE-ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSE
T ss_pred EEEEEEEe-ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc-EEEEEEcccCE
Confidence 2233333 37889998877 33 455554 4899999999888 5544444334567777665 44 88899888888
Q ss_pred EEEECC--CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC----CCc-eeeEeccC-CCCCCeeE-
Q 004270 250 SIWNLE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD----GDP-RLLRFRSG-HSAPPLCI- 320 (764)
Q Consensus 250 ~iwd~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~----~~~-~~~~~~~~-h~~~v~~i- 320 (764)
.++..+ ..+....-+......++++.|.+++..++.+..+|.+.++.++... ... ++.....- ....|+++
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 877443 3334433333445678999999776799999999999999887421 111 22222222 33456666
Q ss_pred --EEec--CC------CEEEEEeCCCcEEEEE
Q 004270 321 --RFYA--NG------RHILSAGQDRAFRLFS 342 (764)
Q Consensus 321 --~~~~--~~------~~l~s~~~dg~i~i~d 342 (764)
++.| .+ ..++.++.+|.|...-
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 4344 12 2488888999988543
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.04 E-value=0.0073 Score=59.90 Aligned_cols=243 Identities=14% Similarity=0.136 Sum_probs=137.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee-------
Q 004270 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL------- 307 (764)
Q Consensus 235 d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------- 307 (764)
.++ .|+.|+.+| |.+++.........+. +...|..+...++-+.|++-+ |+.+.+++++.-.......
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 344 788898888 9999983333333332 344499999999888777775 5999999987653322110
Q ss_pred ---EeccCCCCCCeeEE--EecCCCEEEEEeCCCcEEEEEeecccccc-cccchhhhHHHhhccchhhhhccCceeEeee
Q 004270 308 ---RFRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (764)
Q Consensus 308 ---~~~~~h~~~v~~i~--~~~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (764)
.........+...+ -...+...+.....+.+.+|......... ..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~----------------------------- 131 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKL----------------------------- 131 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccce-----------------------------
Confidence 00112223344444 11233344444445578888765532111 00
Q ss_pred cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (764)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~ 461 (764)
..+. .-+..+.+++|. ++.+++|..++ ..+.|+.++.....
T Consensus 132 ------------------------------~ke~------~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l 172 (275)
T PF00780_consen 132 ------------------------------LKEI------SLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL 172 (275)
T ss_pred ------------------------------eEEE------EcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE
Confidence 0000 112677778887 77888887554 78889887766544
Q ss_pred ecCcccc----ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCee-eeEecCcceEEEEEeecCCEEEEEeCC
Q 004270 462 YLDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRVNGLLATVADD 536 (764)
Q Consensus 462 ~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~i~~~~~s~~~~~la~~~~d 536 (764)
+...... .......++..+... ++.+|++. |..-.+.|....... ..+.-...+.++++. ..+|++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~- 246 (275)
T PF00780_consen 173 LDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS- 246 (275)
T ss_pred eCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-
Confidence 4211100 000112233344443 45666543 334444454433222 355556677777774 457766655
Q ss_pred CeEEEEEccCCeEEEEeecC
Q 004270 537 LVIRLFDVVALRMVRKFEGH 556 (764)
Q Consensus 537 ~~i~v~d~~~~~~~~~~~~h 556 (764)
+.|.||++.++++++.+...
T Consensus 247 ~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 247 NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CEEEEEECcCCcEEEEEECC
Confidence 55999999999999888754
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.00 E-value=0.0027 Score=60.26 Aligned_cols=213 Identities=14% Similarity=0.132 Sum_probs=111.8
Q ss_pred ccccCeeEEEEecCCCEEEE-EcCCCcEEEEEecCCCCCceeeEeccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 266 AHDNAIISLHFFANEPVLMS-ASADNSIKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s-~~~d~~i~vw~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
+-...+.+++|.|+...|++ ....+.|... +.. + ++++...- -.+..-.|++..++.++++.-.++.+.++++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~el--s~~-G--~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYEL--SLD-G--KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEE--ETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEE--cCC-C--CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34456999999998665554 4455555444 433 2 34443322 2467889999988887777767898998888
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
........... +. ...+.....+
T Consensus 94 ~~~~~~~~~~~----------------------------------------------------~~-----~~~l~~~~~~ 116 (248)
T PF06977_consen 94 DDDTTSLDRAD----------------------------------------------------VQ-----KISLGFPNKG 116 (248)
T ss_dssp ----TT--EEE----------------------------------------------------EE-----EEE---S---
T ss_pred eccccccchhh----------------------------------------------------ce-----EEecccccCC
Confidence 54322111000 00 0111111223
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcC---CcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEE
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQS---GISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIK 499 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~ 499 (764)
...+-.+++++.++.++++-...-..+|.+.. .....................+.+++++|.. .+++.+..+..|.
T Consensus 117 N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~ 196 (248)
T PF06977_consen 117 NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL 196 (248)
T ss_dssp SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE
Confidence 46788999999999888888877777777654 1111111100000012344568899999964 5666677788899
Q ss_pred EEECCCCCeeeeEecCc----------ceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270 500 VWDFKGRDLKSRWEVGC----------SLVKIVYHRVNGLLATVADDLVIRLF 542 (764)
Q Consensus 500 iwd~~~~~~~~~~~~~~----------~i~~~~~s~~~~~la~~~~d~~i~v~ 542 (764)
.+| .+|+.+..+.... ....+++.++|++.+++ +-+..++|
T Consensus 197 ~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 197 ELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 999 6677777665542 57789999988655554 45555444
No 360
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.98 E-value=0.031 Score=57.90 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=65.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~ 547 (764)
.....|.+.+++|+.+.++.|+.||.|.+||...+... ..+..-.++.++|+|+|..+++|++.|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 67789999999999999999999999999998776433 3355577899999999999999999999999998754
No 361
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.94 E-value=3.2e-06 Score=85.99 Aligned_cols=200 Identities=15% Similarity=0.166 Sum_probs=136.0
Q ss_pred CCeEEEEEccCC--CEEEEEecCCcEEEEECcCCccc-ceecCccccccccccCcEEEEEECCCC-CEEEEEe----CCC
Q 004270 425 TAVKACTISACG--NFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG----YHG 496 (764)
Q Consensus 425 ~~v~~~~~s~~g--~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~----~dg 496 (764)
..+.|++...+. ..+++|..+|.|.+-........ ..+. .+|....++++|++-. ..||.|- .|.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-------ccccccccccccccccHHHHHhhhhhhcccC
Confidence 455666655443 47899999999999988765444 3332 4788899999999854 4555442 356
Q ss_pred eEEEEECCCC--CeeeeEe----cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC-CC
Q 004270 497 DIKVWDFKGR--DLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DG 569 (764)
Q Consensus 497 ~v~iwd~~~~--~~~~~~~----~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg 569 (764)
.+.|||+.++ .+..... ......+++|-.+.+++.+|.....+.++|++.. +.+.-.-.+..+..+..+| .+
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCC
Confidence 7999999877 3322222 2245568889899999999999999999998732 1111111334566677888 77
Q ss_pred cEEEEEeCCCcEEEEEcC-c-cceEEEEee-----CCceEEEEEcCCC-CeEEEEEeCCCeEEEEecccccC
Q 004270 570 KWLLSSGMDGSLRIWDVI-L-ARQIDAIHV-----DVSITALSLSPNM-DVLATAHVDQNGVYLWVNRCMFS 633 (764)
Q Consensus 570 ~~l~s~s~dg~i~iwd~~-~-~~~~~~~~~-----~~~v~~l~~sp~g-~~lat~~~d~~~i~lW~~~~~~~ 633 (764)
.|+++-. ||.|.+||.. + ..++..+.. ...+..++|+|.. ..|++...|..+|+++++...-.
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t 279 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGT 279 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCC
Confidence 7888765 9999999942 2 122222222 1238999999943 46788888888999999865433
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.91 E-value=0.016 Score=57.48 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=92.6
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee-------
Q 004270 191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI------- 263 (764)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~------- 263 (764)
..++.|++|+.+| +.+++............ ...|..+...++-+ .|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4578999999988 89999843333333333 23499999999877 444443 599999998765444311
Q ss_pred ------ecccccCeeEEE--EecCCCEEEEEcCCCcEEEEEecCCCCCc-eeeEeccCCCCCCeeEEEecCCCEEEEEeC
Q 004270 264 ------REAHDNAIISLH--FFANEPVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334 (764)
Q Consensus 264 ------~~~h~~~v~~l~--~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~ 334 (764)
.......+...+ -...+...+.....+.|.+|.+....... ...+.+ .-...+.+++|. ++.++.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeC
Confidence 101223344443 11233333344445689999887754433 344444 345788999998 557777776
Q ss_pred CCcEEEEEeecccc
Q 004270 335 DRAFRLFSVIQDQQ 348 (764)
Q Consensus 335 dg~i~i~d~~~~~~ 348 (764)
++ ..+.|+.++..
T Consensus 157 ~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 157 KG-FYLIDLNTGSP 169 (275)
T ss_pred Cc-eEEEecCCCCc
Confidence 55 78888875443
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0022 Score=66.57 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=74.2
Q ss_pred eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC--C-CcEEEEECCCceeeeeeecccccCeeEEEEecCC
Q 004270 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS--S-GVISIWNLEKRRLQSVIREAHDNAIISLHFFANE 280 (764)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~--d-g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~ 280 (764)
.+.+-|.. +.....+... ...+..-+|+|++..+....-. . ..+.++|+++++...... -.+.-...+|+|||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~-~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG 249 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDS-GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDG 249 (425)
T ss_pred eEEEEccC-CcceeEeccc-CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCC
Confidence 34444433 4444445443 5677888999999844333222 2 459999999987666654 34445567899999
Q ss_pred CEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270 281 PVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (764)
Q Consensus 281 ~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (764)
+.|+ +...|+...+|-++........ +....+.-..-.|+|||+.++-.+
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~spdG~~ivf~S 300 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSPDGSKIVFTS 300 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCCCCCEEEEEe
Confidence 8665 4556788777766655443222 222222222556778888777654
No 364
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.84 E-value=1.1e-05 Score=82.34 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=129.9
Q ss_pred CEEEEEEeeCC-CCEEEEEeCCCcEEEEECCCceee-eeeecccccCeeEEEEecC-CCEEEEEc----CCCcEEEEEec
Q 004270 226 AVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQ-SVIREAHDNAIISLHFFAN-EPVLMSAS----ADNSIKMWIFD 298 (764)
Q Consensus 226 ~v~~l~fs~d~-~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~h~~~v~~l~~~~~-~~~l~s~~----~d~~i~vw~~~ 298 (764)
.+.|+++.-+. +.++++|..+|.|.+-..+...-. .....+|....++++|++- .+.|+.|- .|-.+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45555554433 248999999999999887765433 3444478889999999884 45666653 35689999998
Q ss_pred CCCCCceeeEecc-CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc-ccccchhhhHHHhhccchhhhhccCce
Q 004270 299 TTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPV 376 (764)
Q Consensus 299 ~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (764)
..-..+..-..+. +......+++|..+.+.+++|...+.+.++|++..... ..+
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------------------------ 193 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------------------------ 193 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------------------------
Confidence 7632222222222 24455668889888889999999989999998743211 111
Q ss_pred eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEEC-c
Q 004270 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNL-Q 454 (764)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~-~ 454 (764)
....+..+.++| .+++++.-. +|.|.+||. .
T Consensus 194 ----------------------------------------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~r 226 (783)
T KOG1008|consen 194 ----------------------------------------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYR 226 (783)
T ss_pred ----------------------------------------------hhhhcccceecCCCCCceeccc-cCceeeccchh
Confidence 113556677888 677776655 999999994 2
Q ss_pred CC-cccceecCccccccccccCcEEEEEECCCC-CEEEEEe-CCCeEEEEECC
Q 004270 455 SG-ISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG-YHGDIKVWDFK 504 (764)
Q Consensus 455 ~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~-~dg~v~iwd~~ 504 (764)
.- ........ ........+..++|.|.. ..+++.. ..++|+.+|+.
T Consensus 227 nienpl~~i~~----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 227 NIENPLQIILR----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhccHHHHHhh----CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 21 11111110 001222358999999954 3444444 45789999875
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.83 E-value=0.022 Score=60.31 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=58.3
Q ss_pred EEEEEEeeCCCCEEEEEeCCC----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC---------c--
Q 004270 227 VTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------S-- 291 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~---------~-- 291 (764)
+...+++|||+.++++-+..| .|+++|+++++.+.... .......+.|.+++..|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 346788999994444545545 49999999997765432 111223499999988777665443 2
Q ss_pred EEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (764)
Q Consensus 292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (764)
|..|.+.+......++.....+......+..++|+++++...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence 445544333222122222211111134666677777766443
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.75 E-value=0.065 Score=56.80 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCEEEEEE-cC----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC----------Cc
Q 004270 184 ISSCVSSPALDVVAVGC-SD----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS----------GV 248 (764)
Q Consensus 184 i~~~~~sp~~~~la~g~-~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d----------g~ 248 (764)
+....+||+++++|.+- .. ..++++|+++|+.+...... .....+.|.+|++.++.+...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34678999999999763 33 35999999999876643222 1223499999988555555322 24
Q ss_pred EEEEECCCceee--eeeecccccC-eeEEEEecCCCEEEEEcC-CCc-EEEEEecCCC
Q 004270 249 ISIWNLEKRRLQ--SVIREAHDNA-IISLHFFANEPVLMSASA-DNS-IKMWIFDTTD 301 (764)
Q Consensus 249 i~iwd~~~~~~~--~~~~~~h~~~-v~~l~~~~~~~~l~s~~~-d~~-i~vw~~~~~~ 301 (764)
|+.|.+.+.... ..+....... ...+..++++++|+..+. ..+ -.+|-++...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 788888776433 3333122222 568889999998765433 233 4555445443
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.74 E-value=0.0011 Score=72.82 Aligned_cols=142 Identities=14% Similarity=0.205 Sum_probs=99.0
Q ss_pred CEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEcC-----CCCEEEEEEcCCeEEEEEccCCc--eEEEEe--
Q 004270 152 NKVIVG-SQEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE--ELVTFT-- 220 (764)
Q Consensus 152 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~sp-----~~~~la~g~~dg~i~iwd~~~~~--~~~~~~-- 220 (764)
+.|+.- ...+.|+-.|+++|+.+..++.|... |..++-.. ...-..+|-.+..+..||.+-.. .+..-.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344443 34577999999999999999987654 55554321 12345678888999999998543 221111
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~ 297 (764)
.......+|++-+.+| .+|+|+.+|.|++||- .++..++...+-..+|.+|..+.||++++..+. ..+.+++.
T Consensus 574 Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 1124567888888787 5999999999999995 343344433377899999999999998887664 55666664
No 368
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.71 E-value=0.023 Score=57.14 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=63.1
Q ss_pred CCeEEEEECCCCCeeeeEecC---cceEEEEEeec--CCEEEE--EeCCCeEEEEEccCCe----EEEEeec-----C--
Q 004270 495 HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRV--NGLLAT--VADDLVIRLFDVVALR----MVRKFEG-----H-- 556 (764)
Q Consensus 495 dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~--~~~la~--~~~d~~i~v~d~~~~~----~~~~~~~-----h-- 556 (764)
..++.+||+.+.+.++++... .....+.|..+ ..+-.+ +......++|..+.++ .+-.+.. -
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 357999999999999999887 33456666554 333333 3233333444434432 1222211 0
Q ss_pred ----------CCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCcc---ceEEEEeeCC-----------------ceEEEE
Q 004270 557 ----------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA---RQIDAIHVDV-----------------SITALS 605 (764)
Q Consensus 557 ----------~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~---~~~~~~~~~~-----------------~v~~l~ 605 (764)
..-|++|..|.|.++|..+. .+|.||.||+.+. +++..+.... ...-+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 23479999999999997555 7899999999863 4444443221 235567
Q ss_pred EcCCCCeEEEEE
Q 004270 606 LSPNMDVLATAH 617 (764)
Q Consensus 606 ~sp~g~~lat~~ 617 (764)
.|-||+.|..+.
T Consensus 381 lS~DGkRlYvTn 392 (461)
T PF05694_consen 381 LSLDGKRLYVTN 392 (461)
T ss_dssp E-TTSSEEEEE-
T ss_pred EccCCeEEEEEe
Confidence 777888777664
No 369
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.69 E-value=0.043 Score=56.23 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=57.9
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC-------------CC-CC-E
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD-------------ST-NT-L 488 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------------~~-~~-~ 488 (764)
...+.+++.+|++++.++..+-|+|.++|+.++..++.+...... .-+.+....-. +. .. +
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA----qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA----QCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc----eEEEEEeecccccccccccccCCCCcceEEE
Confidence 456889999999999999988899999999999888776421110 00001000000 00 01 3
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeEec
Q 004270 489 MISAGYHGDIKVWDFKGRDLKSRWEV 514 (764)
Q Consensus 489 l~s~~~dg~v~iwd~~~~~~~~~~~~ 514 (764)
++-+-.-|.|.||.++.+..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 34556789999999999887776654
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00019 Score=73.58 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=82.2
Q ss_pred cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee-EEEEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270 514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (764)
Q Consensus 514 ~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~-~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~ 592 (764)
....+..+.|+|.-.++|.+..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.+|..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34677889999999999999999999999988 777888887777777 9999999999999999999999999999988
Q ss_pred EE--EeeCCceEEEEEcC
Q 004270 593 DA--IHVDVSITALSLSP 608 (764)
Q Consensus 593 ~~--~~~~~~v~~l~~sp 608 (764)
.. +....+|.++.|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 55566788888873
No 371
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.051 Score=50.81 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=153.9
Q ss_pred CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc-EEEEECCCceeeeeeeccccc--CeeEEEEecCCCEEEEEcCC
Q 004270 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV-ISIWNLEKRRLQSVIREAHDN--AIISLHFFANEPVLMSASAD 289 (764)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~d 289 (764)
|+.+..... ...-..++|+|....-++.+-.-|+ ..++|....+...++. ..++ ---.-.|+|||.+|...-.|
T Consensus 58 Gk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 58 GKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred Cceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCC
Confidence 444444443 2445678888887756666665555 5688988887666654 1111 11234689999988876543
Q ss_pred -----CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE-EeecccccccccchhhhHHHhh
Q 004270 290 -----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF-SVIQDQQSRELSQRHVAKRARK 363 (764)
Q Consensus 290 -----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~ 363 (764)
|.|-+||.+.. ...+..+..|.-....+.+.+||+.++.+. |-|..- |....+....
T Consensus 135 fd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld------------ 197 (366)
T COG3490 135 FDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD------------ 197 (366)
T ss_pred CCCCCceEEEEecccc---cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh------------
Confidence 78999988743 244556678888899999999999888764 334443 2211110000
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
.-..++.+.+..+..+.+....+...+...++.+++.+||...+-.-
T Consensus 198 ---------------------------------sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 198 ---------------------------------SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred ---------------------------------hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 01122233333333332222223334457888999999887665443
Q ss_pred cCCc----EEEE-ECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecCcc
Q 004270 444 AGGW----IERF-NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS 517 (764)
Q Consensus 444 ~~g~----i~i~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~ 517 (764)
..|. --+. -...++....+. .+..........|-+++.+.+..+++..+ ..+...+||..++..+..-....
T Consensus 245 y~G~~~d~ppLvg~~~~g~~l~~~~-~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d- 322 (366)
T COG3490 245 YRGPRNDLPPLVGHFRKGEPLEFLD-LPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD- 322 (366)
T ss_pred eeCCCccCCcceeeccCCCcCcccC-CCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-
Confidence 2221 1111 111222222221 11111123445677888887666665555 45567899999998876554331
Q ss_pred eEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270 518 LVKIVYHRVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 518 i~~~~~s~~~~~la~~~~d~~i~v~d 543 (764)
+.-.-+...-+++.+.+|.+.++.
T Consensus 323 --aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 323 --AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred --cccceeccCceEEecCCceEEecc
Confidence 111223345566677788887774
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00023 Score=73.08 Aligned_cols=92 Identities=21% Similarity=0.360 Sum_probs=80.2
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE-EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSIS-SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (764)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~-~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~ 218 (764)
+..+.++|.- ..+|.+..+|.|.+..++ .+.+.++.-|+..++ +++|.|||+.||+|..||+|++.|+.++..+..
T Consensus 23 i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 23 IKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred eEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4556788888 789999999999999987 888999987888888 999999999999999999999999999999888
Q ss_pred EeccCCCCEEEEEEee
Q 004270 219 FTHSMRGAVTALAFSS 234 (764)
Q Consensus 219 ~~~~~~~~v~~l~fs~ 234 (764)
+.......|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 5544467888988874
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.025 Score=55.83 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=131.3
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 230 l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (764)
..|.++...++.+--..+.|.-|+..+++..... +.+.+.++.....+..|+++.. .+.+++.+..... ..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-TLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-EEecc
Confidence 4567777656666667889999998866543332 3344455555555556665543 3566665333110 12111
Q ss_pred c-cC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270 310 R-SG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (764)
Q Consensus 310 ~-~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (764)
. .+ -....+.+...|+|.+-++.... ++ .+...
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~-----~~--~~~~~-------------------------------------- 138 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGY-----FD--LGKSE-------------------------------------- 138 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCc-----cc--cCccc--------------------------------------
Confidence 1 11 12455677777777655543321 11 00000
Q ss_pred cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECcC--CcccceecC
Q 004270 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQS--GISRGSYLD 464 (764)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-g~i~i~~~~~--~~~~~~~~~ 464 (764)
....+ .+|.+... .........+-.....++||||++.+++.... +.|+.|++.. +.....-
T Consensus 139 --------~~~~G--~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~-- 203 (307)
T COG3386 139 --------ERPTG--SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR-- 203 (307)
T ss_pred --------cCCcc--eEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc--
Confidence 00111 12222210 11111111223556789999999888877664 7899888763 2111110
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCCCCeeeeEecC-cceEEEEEee-cCCEEEEEe
Q 004270 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVA 534 (764)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~ 534 (764)
.......+.+..-+++.+.+|.+.+++..+| .|.+|+.+ ++++..+..+ ..+++++|-- +.+.|.+.+
T Consensus 204 -~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 204 -GFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred -eEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 0001123456777889999998886555554 99999988 9999999888 7788888854 344444443
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.48 E-value=0.00035 Score=44.51 Aligned_cols=39 Identities=38% Similarity=0.841 Sum_probs=34.9
Q ss_pred CeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 547 ~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
+++...+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677788999999999999999999999999999996
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.48 E-value=0.01 Score=47.39 Aligned_cols=101 Identities=21% Similarity=0.304 Sum_probs=70.8
Q ss_pred EEEEEEe---eCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 227 VTALAFS---SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 227 v~~l~fs---~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
|++|++. .||..-|++|+.|..|++|+- ...+..+. -.+.|+++.-... ..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----
Confidence 5666655 466678999999999999984 46666665 5567888888766 5789999999999995422
Q ss_pred ceeeEeccCCCCCCeeEEEec-C--C-CEEEEEeCCCcEE
Q 004270 304 PRLLRFRSGHSAPPLCIRFYA-N--G-RHILSAGQDRAFR 339 (764)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~-~--~-~~l~s~~~dg~i~ 339 (764)
++.+.- ....+.++.+.. + | ..|++|-.+|.+-
T Consensus 73 -RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 -RLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333332 233477777765 2 2 3688888888664
No 376
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.47 E-value=0.12 Score=52.32 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=47.1
Q ss_pred eeeEecCcceEEEEEeec-------CCEEEEEeCCCeEEEEEccCCeEEE---E-eecCCCCeeEEEEcCCCcEEEEEeC
Q 004270 509 KSRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVALRMVR---K-FEGHTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 509 ~~~~~~~~~i~~~~~s~~-------~~~la~~~~d~~i~v~d~~~~~~~~---~-~~~h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
...+..+..+..+.|.+. |.++++....+.|....++....+. . +.....++.++++.|||.+.++.+.
T Consensus 246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence 334455566777777643 4466666667788888887553322 2 2334458999999999999998888
Q ss_pred CCcEE
Q 004270 578 DGSLR 582 (764)
Q Consensus 578 dg~i~ 582 (764)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 88764
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0053 Score=62.04 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=100.4
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-------EEEEEEcCCeEEEEEccCCce-EEEEeccC--
Q 004270 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRYDEE-LVTFTHSM-- 223 (764)
Q Consensus 154 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-------~la~g~~dg~i~iwd~~~~~~-~~~~~~~~-- 223 (764)
+..+.....++-.|++.|+.+.+++-|.. |+-+.+.|+.+ .-++|-.+..|.-||.+-... .......+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 33456667799999999999999998776 78888888753 234677889999999873222 22222211
Q ss_pred --CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 224 --RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 224 --~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
.....|.+-..+| ++++|+.+|.|++||- .++...+...+...+|..+..+.+|++++..+ +..+.+-+..
T Consensus 428 ~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2345666666566 6999999999999997 55555555448899999999999999887665 4556665543
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.074 Score=52.60 Aligned_cols=206 Identities=14% Similarity=0.095 Sum_probs=118.7
Q ss_pred CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----CC-CCCeEE
Q 004270 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK----GW-GSSISS 186 (764)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h-~~~i~~ 186 (764)
.+.|.-|+..+++. ..+..+........+...+ .++++..| +.+++.+++..+..+. +. ....+.
T Consensus 46 ~~~i~r~~~~~g~~-----~~~~~p~~~~~~~~~d~~g----~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 46 GGRIHRLDPETGKK-----RVFPSPGGFSSGALIDAGG----RLIACEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPND 115 (307)
T ss_pred CCeEEEecCCcCce-----EEEECCCCcccceeecCCC----eEEEEccc-cEEEeccCCceeEEeccccCCCCcCCCCc
Confidence 55677777765544 3444455555555566655 44555555 7788877666633331 11 244567
Q ss_pred EEEcCCCCEEEEEEc---------CCeEEEEEcc-CCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 187 CVSSPALDVVAVGCS---------DGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 187 ~~~sp~~~~la~g~~---------dg~i~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
+...|+|.+.+.... ...-.+|-+. .+..+..+..+ -..-+.|+||||++.+.++=+..+.|.-|++..
T Consensus 116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred eeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 788899887665433 0111445444 45544444432 345578999999984555555668888888752
Q ss_pred --c----eeeeeeecccccCeeEEEEecCCCEEEEEcCCC-cEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCE
Q 004270 257 --R----RLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH 328 (764)
Q Consensus 257 --~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~ 328 (764)
+ +........+.+..-.++...+|.+-+++..+| .|.+|+.+ + +++....-....+++++|-. +.+.
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcCE
Confidence 2 111111112345566677777787665444443 78888655 2 45555555557788888865 4455
Q ss_pred EEEEe
Q 004270 329 ILSAG 333 (764)
Q Consensus 329 l~s~~ 333 (764)
|+..+
T Consensus 270 L~iTs 274 (307)
T COG3386 270 LYITS 274 (307)
T ss_pred EEEEe
Confidence 54444
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.42 E-value=0.022 Score=61.99 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=98.1
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE------cCCeEEEEEccCCceEEEEeccCCCCEEEEEEe
Q 004270 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS 233 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs 233 (764)
+|.+.-.+-.....+.-..+....+...++||+|+.+|... .|+.-.||=...+.....+... ...+.-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceEC
Confidence 66665544322223322323335678999999999888765 2443344433333333444433 248889999
Q ss_pred eCCCCEEEEEeC------------CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC-C
Q 004270 234 SDGQPLLASGAS------------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-T 300 (764)
Q Consensus 234 ~d~~~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~-~ 300 (764)
|||+ .+++... .+.+.+.+++.+.... ...+.|..+.|+|||..++... ++.|.+=-+.. .
T Consensus 406 pDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~ 479 (591)
T PRK13616 406 LDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE 479 (591)
T ss_pred CCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence 9987 4544432 2234333444443322 1346799999999999888766 46666532222 2
Q ss_pred CCCceee--E-eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 301 DGDPRLL--R-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 301 ~~~~~~~--~-~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
.+..++. . ...+-...+..+.|..++.+ +.+..++.-.+|.+.
T Consensus 480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred CCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 3322221 1 11223344688999998874 455555545556554
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.007 Score=65.75 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=91.0
Q ss_pred CcEEEEEECCCCCEEEEEe------CCC--eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC----------
Q 004270 475 GEVVGVACDSTNTLMISAG------YHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---------- 536 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---------- 536 (764)
..+...+++|+|+.++... .|. .|.+++.. +.. ..+......+.-.|+|||+.+++..+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4678899999999887665 243 45555542 222 333333458889999998888777533
Q ss_pred --CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEE---EEcCccceEEE-----Eee--CCceEEE
Q 004270 537 --LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI---WDVILARQIDA-----IHV--DVSITAL 604 (764)
Q Consensus 537 --~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i---wd~~~~~~~~~-----~~~--~~~v~~l 604 (764)
+.+.+.+++.++... ...+.|..+.|||||..++... ++.|.+ -.-..|. ... +.. ...+.++
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 233333444433322 2346799999999999988765 577777 4444554 111 211 2236889
Q ss_pred EEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 605 SLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 605 ~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.|.+++.++ ++..+.. ..+|.+.
T Consensus 503 ~W~~~~~L~-V~~~~~~-~~v~~v~ 525 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPE-HPVWYVN 525 (591)
T ss_pred eEecCCEEE-EEecCCC-CceEEEe
Confidence 999999865 4444442 5566653
No 381
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.38 E-value=0.39 Score=54.07 Aligned_cols=109 Identities=14% Similarity=0.178 Sum_probs=74.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC--------eEEEEEc----------------CCCCEEEEEEcCCeEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS--------ISSCVSS----------------PALDVVAVGCSDGKIHV 207 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--------i~~~~~s----------------p~~~~la~g~~dg~i~i 207 (764)
+.|++++.++.|.-.|.++|+.+.++...... ...+++- ..+..|+.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 57999999999999999999999988643211 1112221 13458888999999999
Q ss_pred EEccCCceEEEEeccCCCCE----------------EEEEEeeCCCCEEEEEeC----------CCcEEEEECCCceeee
Q 004270 208 HNVRYDEELVTFTHSMRGAV----------------TALAFSSDGQPLLASGAS----------SGVISIWNLEKRRLQS 261 (764)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~v----------------~~l~fs~d~~~~l~sg~~----------dg~i~iwd~~~~~~~~ 261 (764)
.|.++|+.+..+... +.| ++--.--++ .+++|+. +|.|+-+|.++|+.+-
T Consensus 275 LDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 275 LDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999999876432 211 110011133 4555642 6889999999999887
Q ss_pred eee
Q 004270 262 VIR 264 (764)
Q Consensus 262 ~~~ 264 (764)
...
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 765
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.37 E-value=0.14 Score=48.59 Aligned_cols=183 Identities=12% Similarity=0.057 Sum_probs=125.5
Q ss_pred CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
.....+.+..+|.++-+.+.-| .|+.+|+.+++....... ....---+++... ++...-.-.++...+||
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd 116 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------PPRYFGEGITILG-DKLYQLTWKEGTGFVYD 116 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------TTT--EEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------CccccceeEEEEC-CEEEEEEecCCeEEEEc
Confidence 4456777877888777777776 899999999987765542 2222334444443 34444555789999999
Q ss_pred CCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC-----CCCeeEEEEcCCCcEEEEEeC
Q 004270 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h-----~~~i~~l~~s~dg~~l~s~s~ 577 (764)
..+.+.+.++.....-..++ .|++.|+.......++++|..+.+..+++.-. -..++.+.+- +|...|=.=.
T Consensus 117 ~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 117 PNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp TTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred cccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence 99999999998887777777 67888888888899999999988887776532 2346667776 7777776666
Q ss_pred CCcEEEEEcCccceEEEEee----------------CCceEEEEEcCCCCeEEEEEe
Q 004270 578 DGSLRIWDVILARQIDAIHV----------------DVSITALSLSPNMDVLATAHV 618 (764)
Q Consensus 578 dg~i~iwd~~~~~~~~~~~~----------------~~~v~~l~~sp~g~~lat~~~ 618 (764)
...|..-|..+|+.+..+.. ..-.+.+|+.|.++.|..++.
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 77888999999999988752 113899999997777766654
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.36 E-value=0.0097 Score=47.48 Aligned_cols=96 Identities=24% Similarity=0.364 Sum_probs=70.5
Q ss_pred eCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC
Q 004270 146 HPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225 (764)
Q Consensus 146 ~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 225 (764)
.-++. +.|++|+.|..|++|+ ..+.+.++.. .+.|++++-... ..++.+..+|+|-+|+- ...+...+. +.
T Consensus 11 d~dg~-~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS--K~ 81 (111)
T PF14783_consen 11 DGDGE-NELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS--KN 81 (111)
T ss_pred CCCCc-ceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc--CC
Confidence 33443 7899999999999997 5578888876 567888877776 57899999999999974 344444444 34
Q ss_pred CEEEEEEe---eCCCCEEEEEeCCCcEE
Q 004270 226 AVTALAFS---SDGQPLLASGASSGVIS 250 (764)
Q Consensus 226 ~v~~l~fs---~d~~~~l~sg~~dg~i~ 250 (764)
.+.++.+. .||..-|++|-.+|.|-
T Consensus 82 ~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 82 QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 46666654 34555788998888774
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.074 Score=50.27 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=87.6
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
...+.++.|+|+.+ .|++-.....-.++=..+|..+.++...--...-.+.+..++.+.++--.++.+.++.++.....
T Consensus 85 ~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 44599999999999 55555556666666667888888887444455667889888888888888999999888766322
Q ss_pred cee------eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 304 PRL------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 304 ~~~------~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
... +............++|.|..+.|+.+-+-.-+.+|.+..
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 111 111112256778999999888888888888899988763
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.22 E-value=0.0011 Score=41.99 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
++.+..+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
No 386
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=97.17 E-value=0.61 Score=52.04 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=62.3
Q ss_pred EEEEEEcCCeEEEEEccCCceEEEEec--cCCCCEEEEEEeeCC-----CCEEEEEeCCCcEEEEECCCceeeeeee-cc
Q 004270 195 VVAVGCSDGKIHVHNVRYDEELVTFTH--SMRGAVTALAFSSDG-----QPLLASGASSGVISIWNLEKRRLQSVIR-EA 266 (764)
Q Consensus 195 ~la~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~l~fs~d~-----~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~ 266 (764)
.++++..+|.+.-+.......+..+.. .....+.|+++.++. ..+++.++.|+++++..+.....+..+. .+
T Consensus 551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~ 630 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQG 630 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccc
Confidence 445555555555555443333333431 124578899998875 2379999999999999987655554443 23
Q ss_pred cccCeeEEEEec---CC------CEEEEEcCCCcEEEEEecCCCC
Q 004270 267 HDNAIISLHFFA---NE------PVLMSASADNSIKMWIFDTTDG 302 (764)
Q Consensus 267 h~~~v~~l~~~~---~~------~~l~s~~~d~~i~vw~~~~~~~ 302 (764)
-..++.++.+-+ ++ -+|.+|-..|.+.-.-++.-.+
T Consensus 631 l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G 675 (1205)
T KOG1898|consen 631 LSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTG 675 (1205)
T ss_pred cCCCccceEEEEecccCCccceeEEEEecccccEEEEEEeccccc
Confidence 344555555533 22 1455666666555454454444
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.14 E-value=0.097 Score=52.84 Aligned_cols=198 Identities=10% Similarity=0.116 Sum_probs=97.2
Q ss_pred CEEEEEe-CCCcEEEEeCCC----CeEEEEEcC---CC----CCeEEEEEcCCCCEEEEEEc------CCeEEEEEccCC
Q 004270 152 NKVIVGS-QEGSLQLWNIST----KKKLYEFKG---WG----SSISSCVSSPALDVVAVGCS------DGKIHVHNVRYD 213 (764)
Q Consensus 152 ~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~---h~----~~i~~~~~sp~~~~la~g~~------dg~i~iwd~~~~ 213 (764)
++|++.+ .++.|++.|+.+ .++.+.+.. +. ..-..+-.-|+|+.++++-. -|.+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5676665 778899999873 455555542 11 22234455678988887633 267889998887
Q ss_pred ceEEEEeccC--CCCEEEEEEeeCCCCEEEEEeC--------------------CCcEEEEECCCceeeeeeeccccc-C
Q 004270 214 EELVTFTHSM--RGAVTALAFSSDGQPLLASGAS--------------------SGVISIWNLEKRRLQSVIREAHDN-A 270 (764)
Q Consensus 214 ~~~~~~~~~~--~~~v~~l~fs~d~~~~l~sg~~--------------------dg~i~iwd~~~~~~~~~~~~~h~~-~ 270 (764)
+......... ..--...-|.|..+ +++|... ..++.+||+.+.+.++++..+..+ .
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 7777766532 22345667777665 7777542 368999999999999999855444 4
Q ss_pred eeEEEEecC--CCE-EEEEcCCCcEEEEEecCCCCCceeeE--ec-----------------cCCCCCCeeEEEecCCCE
Q 004270 271 IISLHFFAN--EPV-LMSASADNSIKMWIFDTTDGDPRLLR--FR-----------------SGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 271 v~~l~~~~~--~~~-l~s~~~d~~i~vw~~~~~~~~~~~~~--~~-----------------~~h~~~v~~i~~~~~~~~ 328 (764)
+..+.|..+ ..+ ++.+....+|..|--+ .++.+...+ .. ..-..-|+.|..+.|.++
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 667888665 333 3333333344333221 122211111 11 111345789999999999
Q ss_pred EEEEe-CCCcEEEEEeeccccccc
Q 004270 329 ILSAG-QDRAFRLFSVIQDQQSRE 351 (764)
Q Consensus 329 l~s~~-~dg~i~i~d~~~~~~~~~ 351 (764)
|.... ..|.+|.||+......+.
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EE
T ss_pred EEEEcccCCcEEEEecCCCCCCcE
Confidence 87665 689999999987655443
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.13 E-value=0.00065 Score=61.01 Aligned_cols=143 Identities=18% Similarity=0.187 Sum_probs=86.1
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEE
Q 004270 154 VIVGSQEGSLQLWNISTKKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232 (764)
Q Consensus 154 l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~f 232 (764)
+..-+.+|.|.-++++.-+.-..- .-|... ...-..+..+++|+.+|.|.+|+.................|.++--
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 444566777777776543322111 111111 1222234678999999999999987222221111111233433332
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc-cCeeEEEEecCCCEEEEE--cCCCcEEEEEecCC
Q 004270 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSA--SADNSIKMWIFDTT 300 (764)
Q Consensus 233 s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~--~~d~~i~vw~~~~~ 300 (764)
..+...+..++..+|.|+.|++.-++.+...- .|. .++..+..+..+..++.+ |.|..++.|++..-
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 22222288899999999999999888877776 676 566666666666677777 77777888876543
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.25 Score=46.41 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=87.9
Q ss_pred CCCeEEEEEccCCCEEEEEecC------------------CcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270 424 PTAVKACTISACGNFAVLGTAG------------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (764)
.-....+.+.+||+.++++... -.+.+.|..+|..+.....+. ..+...|..++..+|
T Consensus 161 GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~----~l~~lSiRHld~g~d 236 (366)
T COG3490 161 GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA----SLRQLSIRHLDIGRD 236 (366)
T ss_pred CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch----hhhhcceeeeeeCCC
Confidence 3455678888999988876331 123334444444443332110 145667899999999
Q ss_pred CCEEEEEeCCCe-----EEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeEEE
Q 004270 486 NTLMISAGYHGD-----IKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVR 551 (764)
Q Consensus 486 ~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~ 551 (764)
|+.++.+-..|. -.+=-...++.+..+... ..|-+++.+.+..+++..+- .+...+||..+|..+.
T Consensus 237 gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 237 GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 987776654332 111122344444444332 55778888877777766655 4567899999998876
Q ss_pred EeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 552 ~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
.-.-. ....++-- ..=++..+.+|.+..+.
T Consensus 317 ~a~l~--daaGva~~--~~gf~vssg~G~~~~~s 346 (366)
T COG3490 317 EAALP--DAAGVAAA--KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ccccc--ccccceec--cCceEEecCCceEEecc
Confidence 53311 12222322 22244455677777774
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.2 Score=47.54 Aligned_cols=165 Identities=9% Similarity=0.088 Sum_probs=112.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
.+-...++++.|+|+.+.|.+......-.|+=-..|+.+.++....-...-.+.+..+|+ +.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence 444566999999999999998888888888877889999988765445667788888887 6666667888888877655
Q ss_pred eeeeeee--------ccc-ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC-------CCCCeeEE
Q 004270 258 RLQSVIR--------EAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-------SAPPLCIR 321 (764)
Q Consensus 258 ~~~~~~~--------~~h-~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-------~~~v~~i~ 321 (764)
....... ..+ ....-.++|.|....|+.+-.-+-+.++.+...... -.......+ -..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cccccccCcccccceEeeccccce
Confidence 2221111 112 556789999999999999888888888877643211 111111111 23567788
Q ss_pred Eec-CCCEEEEEeCCCcEEEEEee
Q 004270 322 FYA-NGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 322 ~~~-~~~~l~s~~~dg~i~i~d~~ 344 (764)
|++ .+..++-+.+++.+.-.|..
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC
Confidence 887 45555556666666555543
No 391
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.53 Score=48.87 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=85.0
Q ss_pred CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (764)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~ 215 (764)
...+....+.-.+ .+.+|+.+| +..||..+++.++.-.... .+|..+..+-.+ .|.+|+.+| |.+.+.+..+.
T Consensus 164 d~~V~aLv~D~~g---~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~ 237 (671)
T COG3292 164 DTPVVALVFDANG---RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRA 237 (671)
T ss_pred CccceeeeeeccC---cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccc
Confidence 3444455555544 688999988 8889999998887665543 677777777766 467787766 67777665332
Q ss_pred EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc--ccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH--DNAIISLHFFANEPVLMSASADNSIK 293 (764)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~~~d~~i~ 293 (764)
......-..+.|..+.=..+|. +-.|+.+|..+ ..+....+......-| .+.|.++....+|. |-+++.++.++
T Consensus 238 sn~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~ 313 (671)
T COG3292 238 SNWGPMLPSGNILLLVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR 313 (671)
T ss_pred cccCCCCcchheeeeecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence 2222222244565555555554 66677666443 3333333332222122 23456666555664 55555555444
Q ss_pred E
Q 004270 294 M 294 (764)
Q Consensus 294 v 294 (764)
+
T Consensus 314 ~ 314 (671)
T COG3292 314 Y 314 (671)
T ss_pred E
Confidence 3
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.014 Score=59.26 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=97.8
Q ss_pred EEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCE-----EEEEeCCCcEEEEeCCC-Ce-EEEEEc
Q 004270 106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNK-----VIVGSQEGSLQLWNIST-KK-KLYEFK 178 (764)
Q Consensus 106 l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----l~~~~~dg~i~iwd~~~-~~-~~~~~~ 178 (764)
|.++.....++--|++.++. +.+.+++.. +..+-+.|+..... -++|-.++.|.-||.+- ++ .+..-+
T Consensus 349 l~~~~~~~~l~klDIE~GKI----VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKI----VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred eeCCCCcCcceeeeccccee----eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 34445556688889999988 788887776 44555666654332 45677788899999872 22 222222
Q ss_pred CC----CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270 179 GW----GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (764)
Q Consensus 179 ~h----~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~ 254 (764)
+| .....|.+-..+| +||+|+.+|.|++||- .+....+...+...+|..+..+.||+.+|+|+ +..+.+.++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 32 3455666666665 8999999999999996 67766666666678999999999999655554 567777764
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.97 E-value=0.36 Score=45.82 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=114.9
Q ss_pred EEEE-e-CCEEEEEecCC--cEEEEEccCCcccccceeeEecCC-ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe
Q 004270 98 LLLL-F-GEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172 (764)
Q Consensus 98 ~l~~-~-g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~ 172 (764)
.+.+ + |..+-|.+.-| .|+.+|+.+++. ......+. -+.-.+....+. .....-.++...+||.++.+
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~----~~~~~l~~~~FgEGit~~~d~---l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKV----LQSVPLPPRYFGEGITILGDK---LYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSE----EEEEE-TTT--EEEEEEETTE---EEEEESSSSEEEEEETTTTE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcE----EEEEECCccccceeEEEECCE---EEEEEecCCeEEEEccccce
Confidence 4556 4 55566766655 599999999987 55555554 344445555443 34445678899999999999
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC----CCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----RGAVTALAFSSDGQPLLASGASSGV 248 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~l~fs~d~~~~l~sg~~dg~ 248 (764)
.+.++.-. +.=+.++ .+++.|+.......+..+|..+.+...++.... -..+.-+.|- +|. +.|=.-....
T Consensus 122 ~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDR 196 (264)
T ss_dssp EEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSE
T ss_pred EEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCe
Confidence 99988643 3335555 567778877778899999998888777666321 1245667776 666 6666667788
Q ss_pred EEEEECCCceeeeeeec-----------cc---ccCeeEEEEecCCCEEEEEc
Q 004270 249 ISIWNLEKRRLQSVIRE-----------AH---DNAIISLHFFANEPVLMSAS 287 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~-----------~h---~~~v~~l~~~~~~~~l~s~~ 287 (764)
|...|..+|+....+.. .+ ..-.+.+++.|....|...|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 99999999988877641 01 24578999999877655554
No 394
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.94 E-value=0.036 Score=56.83 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=60.6
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC-----------------CC
Q 004270 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-----------------QP 238 (764)
Q Consensus 176 ~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~-----------------~~ 238 (764)
.+......+.+++.+|.+++.|+...-|+|.++|+.++..++.+++-....+.-+.....+ ..
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3445567789999999999888877779999999999888777665422222222211111 11
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeee
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIR 264 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~ 264 (764)
+++-+-.-|.|.||++++|..+..+.
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEE
Confidence 33445578899999998887776665
No 395
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.84 E-value=1.3 Score=50.12 Aligned_cols=71 Identities=8% Similarity=0.099 Sum_probs=50.8
Q ss_pred CCEEEEEEcCCeEEEEEccCCceEEEEeccCCCC-------EEEEEEee----------------CCCCEEEEEeCCCcE
Q 004270 193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGA-------VTALAFSS----------------DGQPLLASGASSGVI 249 (764)
Q Consensus 193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-------v~~l~fs~----------------d~~~~l~sg~~dg~i 249 (764)
+..|.+++.++.|.-.|.++|+.+-++....... .+.+++.. .+. .++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence 5678888888999999999999998886532110 12233321 122 57778889999
Q ss_pred EEEECCCceeeeeee
Q 004270 250 SIWNLEKRRLQSVIR 264 (764)
Q Consensus 250 ~iwd~~~~~~~~~~~ 264 (764)
.-.|.++|+.+..+.
T Consensus 273 iALDA~TGk~~W~fg 287 (764)
T TIGR03074 273 IALDADTGKLCEDFG 287 (764)
T ss_pred EEEECCCCCEEEEec
Confidence 999999999887653
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.76 E-value=0.14 Score=49.50 Aligned_cols=144 Identities=13% Similarity=0.048 Sum_probs=92.9
Q ss_pred cEEEEEECCCCCEEEEEe---CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEE-ccCCeEE-
Q 004270 476 EVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRMV- 550 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d-~~~~~~~- 550 (764)
.+...+++++++.++... ....+.++. .+...........+..-.|++++...++...+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999998877665 233455554 333333333445788889999988888877777777773 3333221
Q ss_pred EEeec--CCCCeeEEEEcCCCcEEEEEe---CCCcEEEEEcC---cc---ceEEEEe----eCCceEEEEEcCCCCeEEE
Q 004270 551 RKFEG--HTDRITDFCFSEDGKWLLSSG---MDGSLRIWDVI---LA---RQIDAIH----VDVSITALSLSPNMDVLAT 615 (764)
Q Consensus 551 ~~~~~--h~~~i~~l~~s~dg~~l~s~s---~dg~i~iwd~~---~~---~~~~~~~----~~~~v~~l~~sp~g~~lat 615 (764)
..... -.+.|+++.+||||..++... .++.|.|=-+. .| .+...+. ....+++++|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 12221 112899999999999877655 35777777554 23 1111111 1345999999999998887
Q ss_pred EEeCCC
Q 004270 616 AHVDQN 621 (764)
Q Consensus 616 ~~~d~~ 621 (764)
+...+.
T Consensus 183 ~~~~~~ 188 (253)
T PF10647_consen 183 GRSAGG 188 (253)
T ss_pred eCCCCC
Confidence 776653
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.0048 Score=55.61 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCEEEEEeCCCeEEEEECCCC-CeeeeEecC-cceEE-EEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC-CCee
Q 004270 486 NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRIT 561 (764)
Q Consensus 486 ~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~-~~i~~-~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~-~~i~ 561 (764)
+..++.|+.+|.|.+|..... ......... ..|.+ +.--.++.+..+++.||.||.|++.-.+.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 467889999999999987721 111111111 23322 2333456688999999999999999988888877787 5555
Q ss_pred EEEEcCCCcEEEEE--eCCCcEEEEEcC
Q 004270 562 DFCFSEDGKWLLSS--GMDGSLRIWDVI 587 (764)
Q Consensus 562 ~l~~s~dg~~l~s~--s~dg~i~iwd~~ 587 (764)
.+..+..+++|+.+ |.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 55555566666666 666666666655
No 398
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.72 E-value=0.7 Score=45.52 Aligned_cols=273 Identities=15% Similarity=0.095 Sum_probs=120.3
Q ss_pred CCcceEEEEEeCCeEEEEECCeEEEEe---cCce-EE-Eeccc---ccceEEEEEeCCEEEEEecCCcEEEEEccCCccc
Q 004270 55 LPKKIRALASYRDYTFAAYGNHIAVVK---RAHQ-VA-TWSRH---SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN 126 (764)
Q Consensus 55 ~~~~I~~~~~~~~~~~~a~g~~i~vw~---~~~~-~~-~~~~h---~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~ 126 (764)
...++..|+|..+..-.+.|..=.++. -++. .. ..... .-...+|.+.++....++..+ +.+-..+.++.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~t- 92 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-LLLHTTDGGKT- 92 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-EEEEESSTTSS-
T ss_pred CCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-eEEEecCCCCC-
Confidence 456888888875433333343312232 1221 11 11111 234567777766666666555 33333444443
Q ss_pred ccceee-EecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EcCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270 127 LAPVGH-VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGK 204 (764)
Q Consensus 127 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~sp~~~~la~g~~dg~ 204 (764)
...+.. ...+.......++. +. .+..++..|.|..=. +.|+.-.. ...-.+.+..+.-+++|++++++..-..
T Consensus 93 W~~v~l~~~lpgs~~~i~~l~-~~---~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 93 WERVPLSSKLPGSPFGITALG-DG---SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp -EE----TT-SS-EEEEEEEE-TT---EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred cEEeecCCCCCCCeeEEEEcC-CC---cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 111110 01112222222232 22 344445556443322 33433222 3344678899999999999999876555
Q ss_pred EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC-CCceeeee-ee-c-ccccCeeEEEEecCC
Q 004270 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV-IR-E-AHDNAIISLHFFANE 280 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~-~~~~~~~~-~~-~-~h~~~v~~l~~~~~~ 280 (764)
..-|+--.. .-..........|.+|.|.|++. +.+ ....|.|+.=+. ...+.-.. +. . ...-.+..++|.+++
T Consensus 168 ~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 168 YSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEecCCCc-cceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 567764321 12222222367899999999987 444 447888888772 22221111 11 0 123357899999988
Q ss_pred CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270 281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (764)
Q Consensus 281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~ 341 (764)
...++|+. |.+.+ ..+.+ ...+..+....-....+.+.|.++.+ -+..+.+|.|.-|
T Consensus 245 ~~wa~gg~-G~l~~-S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGGS-GTLLV-STDGG-KTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEEST-T-EEE-ESSTT-SS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred CEEEEeCC-ccEEE-eCCCC-ccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 77776664 44432 22222 22233222234456788999987654 4445667866554
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0067 Score=66.72 Aligned_cols=103 Identities=20% Similarity=0.482 Sum_probs=75.2
Q ss_pred CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe
Q 004270 192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271 (764)
Q Consensus 192 ~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v 271 (764)
.+-.++.|+..|.+...|+...-.......+..++|++++|+.+|+ +++.|-.+|.|.+||...++..+.+. .|..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeee-ecCCcc
Confidence 4457889999999998887653111111223367999999999999 89999999999999999999988887 566655
Q ss_pred eEEE---EecCCCEEEEEcCCCcEEEEEec
Q 004270 272 ISLH---FFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 272 ~~l~---~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
+++- +..++..++++...|. +|.+.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 5544 3445557777777665 66543
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.62 E-value=0.13 Score=56.24 Aligned_cols=190 Identities=11% Similarity=0.062 Sum_probs=94.1
Q ss_pred CEEEEEeCC------CcEEEEeCCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEEcCC-----eEEEEEccCCceEEEE
Q 004270 152 NKVIVGSQE------GSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTF 219 (764)
Q Consensus 152 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~h~-~~i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~ 219 (764)
...++|+.+ ..+..||..+.+-. .+..-. ..-......-++++.+.|+.++ .+..||..+++-...-
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 345556543 34778887766421 111111 1111122233567778887653 4788998766432211
Q ss_pred eccC-CCCEEEEEEeeCCCCEEEEEeCCC-----------------------cEEEEECCCceeeeeeecccccCeeEEE
Q 004270 220 THSM-RGAVTALAFSSDGQPLLASGASSG-----------------------VISIWNLEKRRLQSVIREAHDNAIISLH 275 (764)
Q Consensus 220 ~~~~-~~~v~~l~fs~d~~~~l~sg~~dg-----------------------~i~iwd~~~~~~~~~~~~~h~~~v~~l~ 275 (764)
.... ......+ .-+|. +.+.|+.++ .+..||..+.+-...-. -.......-.
T Consensus 384 ~mp~~r~~~~~~--~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~ 459 (557)
T PHA02713 384 DMPIALSSYGMC--VLDQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGV 459 (557)
T ss_pred CCCcccccccEE--EECCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcE
Confidence 1111 1111122 23566 777777542 47778887764332221 1111111111
Q ss_pred EecCCCEEEEEcCCC------cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC--cEEEEEeeccc
Q 004270 276 FFANEPVLMSASADN------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQDQ 347 (764)
Q Consensus 276 ~~~~~~~l~s~~~d~------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~i~i~d~~~~~ 347 (764)
..-++++.+.||.++ .+..||.++. ..+..+..+.........+.+ +++..++||.++ ++..||..+++
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 223566666676542 2445654430 344554444333333333332 778888999888 67777777665
Q ss_pred cc
Q 004270 348 QS 349 (764)
Q Consensus 348 ~~ 349 (764)
-.
T Consensus 537 W~ 538 (557)
T PHA02713 537 WN 538 (557)
T ss_pred cc
Confidence 43
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=96.59 E-value=1 Score=45.77 Aligned_cols=273 Identities=10% Similarity=0.039 Sum_probs=132.2
Q ss_pred CcceEEEEEeCCeEEEEECCeEEEEe---cCceEEE----ecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccccc
Q 004270 56 PKKIRALASYRDYTFAAYGNHIAVVK---RAHQVAT----WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA 128 (764)
Q Consensus 56 ~~~I~~~~~~~~~~~~a~g~~i~vw~---~~~~~~~----~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~ 128 (764)
...+.+|+|..+..-.+.|..=.||. -++.=.. +......+.++.+.++....++..|.| +.-.++-....
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g~i--~~S~DgG~tW~ 122 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQPSLL--LHTTDGGKNWT 122 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCCceE--EEECCCCCCCe
Confidence 56788899875544444554433442 2221111 111233466777765544444555543 33333322221
Q ss_pred ceeeE-ecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 004270 129 PVGHV-KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIH 206 (764)
Q Consensus 129 ~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~sp~~~~la~g~~dg~i~ 206 (764)
.+..- ..........+..+ + .+..++..|.|..=+ +.|+.-..+. .-...+..+.+.|++.+++++.. |.+.
T Consensus 123 ~~~~~~~~~~~~~~i~~~~~-~---~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~ 196 (334)
T PRK13684 123 RIPLSEKLPGSPYLITALGP-G---TAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFY 196 (334)
T ss_pred EccCCcCCCCCceEEEEECC-C---cceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEE
Confidence 11110 01111111222222 2 233334445333222 2333322222 22567889999999877766554 6443
Q ss_pred EEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---cccCeeEEEEecCCCEE
Q 004270 207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPVL 283 (764)
Q Consensus 207 iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l 283 (764)
.-.-..++.-..........++++.+.++++ ++++| ..|.+.+=..+.+..-...... ....+.++.+.+++..+
T Consensus 197 ~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~ 274 (334)
T PRK13684 197 STWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW 274 (334)
T ss_pred EEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE
Confidence 2211222333333444457899999999998 65554 4676654333444322221101 22357888999887655
Q ss_pred EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
+ ++.+|.+. ...+.. ..++.......-......+.|..+++. +..+..|.|..++
T Consensus 275 ~-~G~~G~v~-~S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~ 329 (334)
T PRK13684 275 A-GGGNGTLL-VSKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYV 329 (334)
T ss_pred E-EcCCCeEE-EeCCCC-CCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEec
Confidence 4 55567554 332322 222222211222345777887766655 4456678777665
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.57 E-value=0.81 Score=44.33 Aligned_cols=115 Identities=12% Similarity=0.131 Sum_probs=69.2
Q ss_pred CEEEEEEeeCCCCEEEEEe--CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEe-cCCCC
Q 004270 226 AVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF-DTTDG 302 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~-~~~~~ 302 (764)
.+.+.+.+++++.+.+... ....++++. .+....... ....+....|.+++...+....+...+++.. .....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6899999999984444442 334455554 333333332 2237888899999876666666666677642 12222
Q ss_pred CceeeEeccCCCCCCeeEEEecCCCEEEEEe---CCCcEEEEEeec
Q 004270 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQ 345 (764)
Q Consensus 303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~dg~i~i~d~~~ 345 (764)
....+... .-...|..++++|||..++... .++.+.+--+..
T Consensus 101 ~~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 101 EPVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred eeEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 11222221 1112899999999999887655 346666665543
No 403
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.74 Score=43.63 Aligned_cols=271 Identities=10% Similarity=0.091 Sum_probs=152.1
Q ss_pred CCcceEEEEEeCCeEEEEECCe-EEEEecCce-----EEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccccc
Q 004270 55 LPKKIRALASYRDYTFAAYGNH-IAVVKRAHQ-----VATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA 128 (764)
Q Consensus 55 ~~~~I~~~~~~~~~~~~a~g~~-i~vw~~~~~-----~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~ 128 (764)
.+.-+..+.++.+..|+|-++. +++.|.... +..+.- .+--.++...|++...++.|.-+.+.|+.+.....
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~- 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ- 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCCEEEEeeccCcEEEEECCCCCCce-
Confidence 4667788899999999998776 999986432 222222 23445666789999999977778889998765421
Q ss_pred ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 004270 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI 205 (764)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i 205 (764)
..............++++ + ++.+++..|+-+.+.|+... ..+.... ....+.++..+++-.+++...+ -+
T Consensus 163 lagrya~~~~d~~~v~IS--G--n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~e--gv 235 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--G--NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDE--GV 235 (370)
T ss_pred eeeeeccCCCCceeEEEe--c--CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEccc--ce
Confidence 133344444433445554 4 56888888999999998754 3333332 2447888888888777776544 46
Q ss_pred EEEEccCCceEEEEeccCCCCEEEE-EEeeCCCCEEEEEeCCCcEEEEECCCceeee---eeecccccCeeEEEEecCCC
Q 004270 206 HVHNVRYDEELVTFTHSMRGAVTAL-AFSSDGQPLLASGASSGVISIWNLEKRRLQS---VIREAHDNAIISLHFFANEP 281 (764)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~v~~l-~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~~h~~~v~~l~~~~~~~ 281 (764)
.+-|..+.+....+..-....+.++ .|.-.++ +......+.-+.+-|+++..... .+. .....-..+... +.
T Consensus 236 livd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-~~Yvadga~gl~~idisnp~spfl~ss~~-t~g~~a~gi~ay--~~ 311 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-YAYVADGAKGLPIIDISNPPSPFLSSSLD-TAGYQAAGIRAY--GN 311 (370)
T ss_pred EEEecCCCCCceEeeccccCCcccccceecccc-eeeeeccccCceeEeccCCCCCchhcccc-CCCccccceEEe--cC
Confidence 7777776654444432222223232 2222344 55555656666777765542211 111 111122222222 33
Q ss_pred EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
++..+..+ ...+-+.... .......+....+.+.+.+-+.+.+.+...++-+.+|+.
T Consensus 312 y~yiadkn-~g~vV~~s~~----s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 312 YNYIADKN-TGAVVDASPP----SMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred eeEeccCC-ceEEEeCCCh----hhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 44444433 2333332222 111111222223334444445567778888888988875
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.50 E-value=0.29 Score=53.70 Aligned_cols=215 Identities=12% Similarity=0.125 Sum_probs=108.9
Q ss_pred eEEEEecCCCeEEEecCCCCcce--EEEEEeCCeEEEEECC--------eEEEEecCceEEE----ecccccceEEEEEe
Q 004270 37 AFHIYNCAKLNLVLVGPQLPKKI--RALASYRDYTFAAYGN--------HIAVVKRAHQVAT----WSRHSAKVNLLLLF 102 (764)
Q Consensus 37 ~i~iwd~~~~~~~~~~~~~~~~I--~~~~~~~~~~~~a~g~--------~i~vw~~~~~~~~----~~~h~~~v~~l~~~ 102 (764)
.+..||..+.+-....+ .+.+. .+++...+.+|++.|. .+..||.....-. +............+
T Consensus 273 ~v~~yd~~~~~W~~l~~-mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVIST-IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCC-CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 56789998876544332 22222 3556667778887663 1667775332111 21112222334456
Q ss_pred CCEEEEEecCC-----cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----------------
Q 004270 103 GEHILSIDIDG-----NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----------------- 160 (764)
Q Consensus 103 g~~l~s~~~dg-----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d----------------- 160 (764)
|...+.|+.++ ++..||..+.+-.. +..+....... .+..-++ ...++|+.+
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~--~~~mp~~r~~~--~~~~~~g--~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKM--LPDMPIALSSY--GMCVLDQ--YIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEE--CCCCCcccccc--cEEEECC--EEEEEeCCCccccccccccccccccc
Confidence 77777777654 37888887654311 11211111111 1222344 345556544
Q ss_pred ------CcEEEEeCCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEEccC-Cce--EEEEeccC
Q 004270 161 ------GSLQLWNISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRY-DEE--LVTFTHSM 223 (764)
Q Consensus 161 ------g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~sp~~~~la~g~~d------g~i~iwd~~~-~~~--~~~~~~~~ 223 (764)
..+..||..+.+= +..+.. ......+..-++++.++|+.+ ..+..||..+ ++- +..+...
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~- 502 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR- 502 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-
Confidence 2477788766532 222211 111222223346666777654 2467899887 442 2222221
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCC--cEEEEECCCceeeeeee
Q 004270 224 RGAVTALAFSSDGQPLLASGASSG--VISIWNLEKRRLQSVIR 264 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~ 264 (764)
......+.+ +|. +.++|+.+| .+..||..+.+-.....
T Consensus 503 r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 503 LSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred cccceeEEE--CCE-EEEEeeecceeehhhcCcccccccchhh
Confidence 112222222 566 888999888 77788887776554433
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.01 Score=65.39 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=76.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe--eeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE
Q 004270 485 TNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (764)
Q Consensus 485 ~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~ 562 (764)
.+..++.|+..|.+-..|....-. .+-....+++++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 455788888888888888765311 222334589999999999999999999999999999999999998877776665
Q ss_pred EEE---cCCCcEEEEEeCCCcEEEEEc
Q 004270 563 FCF---SEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 563 l~~---s~dg~~l~s~s~dg~i~iwd~ 586 (764)
+-+ ..++..+.++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 543 445567778777775 6654
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.48 E-value=0.49 Score=43.16 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=66.1
Q ss_pred EEEEEECCCCCEEE-EEeCCCeEEEEE--CCCCCee-----eeEec-----CcceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270 477 VVGVACDSTNTLMI-SAGYHGDIKVWD--FKGRDLK-----SRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 477 v~~l~~~~~~~~l~-s~~~dg~v~iwd--~~~~~~~-----~~~~~-----~~~i~~~~~s~~~~~la~~~~d~~i~v~d 543 (764)
-++++|+.+.+.+. +-+.+-.|.-|| ..+|... ..++. +-..-.+++..+|.+.++....++|..+|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35788888776554 445667787788 4555322 22221 12223456667889999999999999999
Q ss_pred ccCCeEEEEeecCCCCeeEEEEcC
Q 004270 544 VVALRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 544 ~~~~~~~~~~~~h~~~i~~l~~s~ 567 (764)
..+|+.+.++.-.+..|++++|--
T Consensus 240 p~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999998999999999954
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.46 E-value=0.011 Score=39.11 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~ 215 (764)
...|.+++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999998 4544
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.087 Score=58.75 Aligned_cols=150 Identities=7% Similarity=-0.012 Sum_probs=96.9
Q ss_pred CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCc---cccccccccCcEEEEEECCCC-CEEEEEeCCCeE
Q 004270 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDM---SERSNYAHNGEVVGVACDSTN-TLMISAGYHGDI 498 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v 498 (764)
..+..+...+|+...++-.... .|..||+.+-......... ..+..........++.|.|.- ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566677778877665554433 8889998764433211100 000111223345667777753 235566788899
Q ss_pred EEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC----CCCeeEEEEcCCCcEEE
Q 004270 499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLL 573 (764)
Q Consensus 499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h----~~~i~~l~~s~dg~~l~ 573 (764)
++..+... .....+......++++|+|.|+.+++|..+|++.-|... ++..+.+.+. ..+|.+++|-..-.||+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 88876633 333445666889999999999999999999999988653 3444444332 36799999988777777
Q ss_pred EE
Q 004270 574 SS 575 (764)
Q Consensus 574 s~ 575 (764)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 54
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.43 E-value=0.71 Score=42.16 Aligned_cols=142 Identities=9% Similarity=0.138 Sum_probs=86.6
Q ss_pred CcEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEE-
Q 004270 475 GEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFD- 543 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d- 543 (764)
...+.-..+|+|++.+-.-.| |.++.|-.. ++....+..-.--..++|+.+.+.+... +.+..|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 344556678999985432222 334444322 1221122222334568888877766544 5567787777
Q ss_pred -ccCCeE-----EEEeecC---C-CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCC-CC
Q 004270 544 -VVALRM-----VRKFEGH---T-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-MD 611 (764)
Q Consensus 544 -~~~~~~-----~~~~~~h---~-~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~-g~ 611 (764)
..+|.. +..++.. . ..--.++...+|.+.+++-..++|...|..+|+.+..++.+.+ +++++|--- -+
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d 267 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD 267 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence 555532 3333321 1 1123456667888888888889999999999999999998876 999999642 23
Q ss_pred eEEEEE
Q 004270 612 VLATAH 617 (764)
Q Consensus 612 ~lat~~ 617 (764)
.|.++.
T Consensus 268 ~~yvT~ 273 (310)
T KOG4499|consen 268 ILYVTT 273 (310)
T ss_pred EEEEEe
Confidence 444443
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.36 E-value=1.5 Score=45.29 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=37.2
Q ss_pred cCeeEEEEecCCCEEEEEc-----------CCC-cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 269 NAIISLHFFANEPVLMSAS-----------ADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 269 ~~v~~l~~~~~~~~l~s~~-----------~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
.....++|.++|+++++-. ..+ .|.+++-...++.......+......+..+++.++| |+.+....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3567788888888766643 122 555554333333333333333344567889999888 44444443
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.36 E-value=1.7 Score=45.68 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=76.5
Q ss_pred ccEEEEeCCCCC--CEEEEEeCCCcEEEEeCC-----CCeEEEEEcCC---CC--CeEEEEEcCCCCEEEEEEcCCeEEE
Q 004270 140 TPTCIMHPDTYL--NKVIVGSQEGSLQLWNIS-----TKKKLYEFKGW---GS--SISSCVSSPALDVVAVGCSDGKIHV 207 (764)
Q Consensus 140 ~~~~~~~p~~~~--~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~h---~~--~i~~~~~sp~~~~la~g~~dg~i~i 207 (764)
+..+.|.|.... ..+++......|.+|-+. +++.+..-..+ .- --..+.|+|....|++-+....-.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 344556554311 245566677889999764 23333322211 11 1245789999999998888776678
Q ss_pred EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
+++..+...........+-|.|.+|.+||+.++++.+..=.-++||-..
T Consensus 139 ~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 139 PSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 8887666555444444789999999999996666656566778998543
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.23 E-value=2 Score=45.18 Aligned_cols=150 Identities=13% Similarity=0.172 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCEEEEEE--cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC----CCEEEEEeCCCcEEEEECC
Q 004270 182 SSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG----QPLLASGASSGVISIWNLE 255 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~----~~~l~sg~~dg~i~iwd~~ 255 (764)
.++..++|....+.+.+.- .+|.+++=| .+.+.+| ..|..++|.|-+ ..+||+ .....|.+|.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEE-eccceEEEEEec
Confidence 4677888886555555542 234333322 2233443 348899999853 335554 457899999875
Q ss_pred -----Cceeeeeeeccccc----CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270 256 -----KRRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (764)
Q Consensus 256 -----~~~~~~~~~~~h~~----~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (764)
.++.+......... --..+.|+|....|+.-.....-.++++..... +. +.--...+.|.|.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rV-kaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RV-KADIKTSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eE-EEeccCCceEEEEEecCcC
Confidence 22322222101111 234678999998887766655445555544332 22 2223567889999999999
Q ss_pred CEEEEEeCC-CcEEEEEe
Q 004270 327 RHILSAGQD-RAFRLFSV 343 (764)
Q Consensus 327 ~~l~s~~~d-g~i~i~d~ 343 (764)
+.|+.+-.. =.-.+||-
T Consensus 168 ~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CEEEEEeCCeEEEEEecC
Confidence 988876433 23456764
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.23 E-value=0.22 Score=51.55 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=82.8
Q ss_pred CcEEEEEECCCCCEEEEEe-----------CCC-eEEEEECCC--CCe--eeeEecC-cceEEEEEeecCCEEEEEeCCC
Q 004270 475 GEVVGVACDSTNTLMISAG-----------YHG-DIKVWDFKG--RDL--KSRWEVG-CSLVKIVYHRVNGLLATVADDL 537 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~-~~i~~~~~s~~~~~la~~~~d~ 537 (764)
.....|+|+++|+++++-. ..+ .|.+++-.+ ++. ...+... .....+++.+++ |.+++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999999877753 223 677776442 322 2233222 456889999888 44444444
Q ss_pred eEEEEEccC-------CeE-EEEeec----CCCCeeEEEEcCCCcEEEEEeCC-------------------CcEEEEEc
Q 004270 538 VIRLFDVVA-------LRM-VRKFEG----HTDRITDFCFSEDGKWLLSSGMD-------------------GSLRIWDV 586 (764)
Q Consensus 538 ~i~v~d~~~-------~~~-~~~~~~----h~~~i~~l~~s~dg~~l~s~s~d-------------------g~i~iwd~ 586 (764)
..++.|... .+. +..+.. +......++|.|||++.++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333445432 112 222322 23447789999999877755521 34555555
Q ss_pred CccceEEEE-eeCCceEEEEEcCCCCeEEEEEeCC
Q 004270 587 ILARQIDAI-HVDVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 587 ~~~~~~~~~-~~~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
.+++. ..+ ........++|+|+|+++++-..+.
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEccCCC
Confidence 44443 333 2333478999999999987655433
No 414
>PRK10115 protease 2; Provisional
Probab=96.01 E-value=3.7 Score=46.37 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=38.9
Q ss_pred CEEEEEEeeCCCCEEEEEeCCC----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC
Q 004270 226 AVTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 288 (764)
.+..+.++|||+.++++.+.+| .|++.|+.+++.+.... ...-..++|.+|++.|+....
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i---~~~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL---DNVEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc---cCcceEEEEeeCCCEEEEEEe
Confidence 4677889999994444433333 58899998886443322 111256999999987766654
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=1.5 Score=41.64 Aligned_cols=234 Identities=12% Similarity=0.085 Sum_probs=140.3
Q ss_pred CcceEEEEEeCCeEEEEECCeEEEEecCce------E-EEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccccc
Q 004270 56 PKKIRALASYRDYTFAAYGNHIAVVKRAHQ------V-ATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA 128 (764)
Q Consensus 56 ~~~I~~~~~~~~~~~~a~g~~i~vw~~~~~------~-~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~ 128 (764)
.+.|.++....+.-+++.|..+.+.|.... . ...-.-.+-+..+.+.+++...+..+.-++|.|+++.+...
T Consensus 42 g~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~- 120 (370)
T COG5276 42 GKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPT- 120 (370)
T ss_pred cCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcc-
Confidence 378899999999999999999777663211 1 11222334555666789999999999999999999876521
Q ss_pred ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 004270 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI 205 (764)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i 205 (764)
.+..+... -..-.+.-.+ ++.+++.-+.-+.+.|+.+. .+...+......-..++.| |++-.++..|+-+
T Consensus 121 ~~~~lnt~---gyaygv~vsG--n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL 193 (370)
T COG5276 121 LIGFLNTD---GYAYGVYVSG--NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL 193 (370)
T ss_pred eeccccCC---ceEEEEEecC--CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence 11222111 2233345556 77888886666888888654 3444444444444556665 5666777788999
Q ss_pred EEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEE-EEecCCCEE
Q 004270 206 HVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL-HFFANEPVL 283 (764)
Q Consensus 206 ~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~l 283 (764)
.+.|+.......-+.. .....+.++..+++.. +++.. +--+.+-|..+.+....+-.-....+.++ .+.-.+++.
T Consensus 194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~ 270 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA 270 (370)
T ss_pred EEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEc--ccceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence 9999876543222221 1123688888887755 45443 33477777766653333321112222222 222345566
Q ss_pred EEEcCCCcEEEEEecCC
Q 004270 284 MSASADNSIKMWIFDTT 300 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~ 300 (764)
..+..+.-+.+-|+..+
T Consensus 271 Yvadga~gl~~idisnp 287 (370)
T COG5276 271 YVADGAKGLPIIDISNP 287 (370)
T ss_pred eeeccccCceeEeccCC
Confidence 66666666666666554
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.92 E-value=0.027 Score=37.37 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270 557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (764)
Q Consensus 557 ~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~ 592 (764)
...|..++|+|...+||.++.||.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 356999999999999999999999999998 55543
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.91 E-value=2.6 Score=43.72 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=92.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-----EEEEEcCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEccCC--c-----
Q 004270 152 NKVIVGSQEGSLQLWNISTKK-----KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYD--E----- 214 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~~~~sp-----~~~~la~g~~dg~i~iwd~~~~--~----- 214 (764)
.+|++|+.+|.++||+..... ++.+.+- ..+|..++.-+ +...||+ -.-..+.||.+... .
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 689999999999999985433 3333332 67888887543 2345666 44578889988421 1
Q ss_pred --e-EEEEeccCCCCEEEEEEeeC----CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270 215 --E-LVTFTHSMRGAVTALAFSSD----GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (764)
Q Consensus 215 --~-~~~~~~~~~~~v~~l~fs~d----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 287 (764)
. ...+.+........++.-|- |+.++.+-+.||.+.+++-+.......+. ..--...+.|.+....+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEEEEec
Confidence 1 11222222334445554442 34588899999999999976655444443 233344577888888899999
Q ss_pred CCCcEEEEEec
Q 004270 288 ADNSIKMWIFD 298 (764)
Q Consensus 288 ~d~~i~vw~~~ 298 (764)
.+..+.-|.+.
T Consensus 194 ss~~l~~Yky~ 204 (418)
T PF14727_consen 194 SSWTLECYKYQ 204 (418)
T ss_pred CceeEEEecHH
Confidence 88888888653
No 418
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.70 E-value=0.97 Score=49.50 Aligned_cols=222 Identities=13% Similarity=0.119 Sum_probs=121.9
Q ss_pred CeEEEEEEeC------CeEEEEecCCCeEEEec-CCCCcceEEEEEeCCeEEEEECCe--------EEEEecCce----E
Q 004270 26 TENFVTVSVG------KAFHIYNCAKLNLVLVG-PQLPKKIRALASYRDYTFAAYGNH--------IAVVKRAHQ----V 86 (764)
Q Consensus 26 ~~~~~~~~~~------~~i~iwd~~~~~~~~~~-~~~~~~I~~~~~~~~~~~~a~g~~--------i~vw~~~~~----~ 86 (764)
+..+++++.. .++..||..++.-.... ...+..-.++++.++.+|++.|.+ +..||.... +
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 4455565555 56889999998554443 234555678888888888887643 666775332 2
Q ss_pred EEecccccceEEEEEeCCEEEEEecCCc-----EEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-
Q 004270 87 ATWSRHSAKVNLLLLFGEHILSIDIDGN-----MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE- 160 (764)
Q Consensus 87 ~~~~~h~~~v~~l~~~g~~l~s~~~dg~-----v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d- 160 (764)
..+............+|..-|.|+.||. |-.||..+.+-.. +.... .......+..-.+ ...++|+.+
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~--~~r~~~gv~~~~g--~iYi~GG~~~ 438 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPML--TRRSGHGVAVLGG--KLYIIGGGDG 438 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc--cCCCC--cceeeeEEEEECC--EEEEEcCcCC
Confidence 2233444444445567888888888875 7778877765421 11111 1111222233344 345556644
Q ss_pred -----CcEEEEeCCCCeEE--EEEcCCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEEccCCceEEEEeccCCCCEE
Q 004270 161 -----GSLQLWNISTKKKL--YEFKGWGSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTFTHSMRGAVT 228 (764)
Q Consensus 161 -----g~i~iwd~~~~~~~--~~~~~h~~~i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~ 228 (764)
.++..||..+.+-. ..+..-..... ...-++.+.++|+.|+ +|..||..+.+-...-.. ..+..
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m--~~~rs 514 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM--TSPRS 514 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC--ccccc
Confidence 35677887765422 22221111111 2233567788888776 377788877664433211 11222
Q ss_pred EEEEee-CCCCEEEEEeCCC-----cEEEEECCCce
Q 004270 229 ALAFSS-DGQPLLASGASSG-----VISIWNLEKRR 258 (764)
Q Consensus 229 ~l~fs~-d~~~~l~sg~~dg-----~i~iwd~~~~~ 258 (764)
...... ++. +.++|+.|| +|..||..+.+
T Consensus 515 ~~g~~~~~~~-ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 515 AVGVVVLGGK-LYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccEEEECCE-EEEEecccCccccceeEEcCCCCCc
Confidence 222222 344 778888665 46666665543
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.64 E-value=0.42 Score=51.72 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=77.0
Q ss_pred cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-cCCCCeeEEEE--cCCCcEEEEEeCCCcEEEEEc------
Q 004270 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDV------ 586 (764)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~--s~dg~~l~s~s~dg~i~iwd~------ 586 (764)
..++.+.-|.-++..++-++...+.|||...+....+-. ...+.|.++.| .|||+.+++.|..+.|.++.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555556665665666789999999887543322 34678999988 569999999999999999853
Q ss_pred ---CccceEEEEee----CCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 587 ---ILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 587 ---~~~~~~~~~~~----~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
++-.+++.+.. +.+|.+..|.++|.+++.++ + .+++++-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-N--qlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-N--QLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-C--EEEEECCC
Confidence 22234554432 23599999999998776654 2 48888754
No 420
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.63 E-value=3.5 Score=43.19 Aligned_cols=473 Identities=14% Similarity=0.102 Sum_probs=216.5
Q ss_pred cceEEEEEeCC-eEEEEECCeEEEEecCceEEEecccccceEEEEEeCCEEE-EEecCCcEEEEEccCCcccccceeeEe
Q 004270 57 KKIRALASYRD-YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHIL-SIDIDGNMFIWAFKGIEENLAPVGHVK 134 (764)
Q Consensus 57 ~~I~~~~~~~~-~~~~a~g~~i~vw~~~~~~~~~~~h~~~v~~l~~~g~~l~-s~~~dg~v~vWd~~~~~~~~~~~~~~~ 134 (764)
.-|++|+...| +.++|+-..+.-|+-......+.+| ++..+.+++..++ ..+..|.|.+=....... ..+.
T Consensus 40 nv~~~~~q~~dGylW~at~~G~vrY~g~~~f~vf~gn--~~~~ly~~gtr~Ll~s~~~gll~lga~~~~d~-----~q~y 112 (671)
T COG3292 40 NVVRAMLQDADGYLWLATSDGLVRYDGPNDFGVFPGN--SVLGLYPDGTRLLLVSSENGLLALGALGRRDF-----IQVY 112 (671)
T ss_pred HHHHHHhhccCCcEEEEecccEEEecCCcccccccCC--ceEEEecCcceEEeeeccchhhhhccccceec-----eeec
Confidence 44677777777 6677776666666543333344444 5777777765433 334444343333221111 0000
Q ss_pred cCCccccEEEEeCCCCC----CEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 004270 135 LDDKFTPTCIMHPDTYL----NKVIVGSQEGSLQLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVH 208 (764)
Q Consensus 135 ~~~~~~~~~~~~p~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~sp~~~~la~g~~dg~i~iw 208 (764)
......+.+.|+.+.+ +.+-....+.-+..-|....+.+...+ .-..+|.++.+.-.| .+-+|+.|| +..|
T Consensus 113 -r~~~~~s~a~h~lt~lIddaqllw~~~~~~gV~~~d~lg~~~v~~~r~ll~d~~V~aLv~D~~g-~lWvgT~dG-L~~f 189 (671)
T COG3292 113 -RGGVAKSDALHELTALIDDAQLLWLHASVIGVDSADALGREAVKDVRPLLKDTPVVALVFDANG-RLWVGTPDG-LSYF 189 (671)
T ss_pred -ccceeeccCccccccccchhhhhhhccccCCccccccchhhhccCccccccCccceeeeeeccC-cEEEecCCc-ceEE
Confidence 1111122222322210 111112222222222322222222111 125678888888887 566788877 6778
Q ss_pred EccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC
Q 004270 209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 209 d~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 288 (764)
|..+++.+..-......+|..+.-+-.|+ |.+|+.+| +.+.+.+..+.......-..+.|..+.-..+| .+-.|+.
T Consensus 190 d~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTe 265 (671)
T COG3292 190 DAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTE 265 (671)
T ss_pred ccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeec
Confidence 88888877766655446788888777786 77787665 77777665333222221122233333322233 3444444
Q ss_pred CCcEEEEEecCCCCC-ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270 289 DNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (764)
Q Consensus 289 d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (764)
.|- |........ ..+.....--...|.++....+|. +-+++.+|.+++-+..
T Consensus 266 nGl---~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~----------------------- 318 (671)
T COG3292 266 NGL---WRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD----------------------- 318 (671)
T ss_pred ccc---eeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecch-----------------------
Confidence 442 222222111 111111111223455555555664 5555556544443211
Q ss_pred hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc--CCCEEEEEecC
Q 004270 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA--CGNFAVLGTAG 445 (764)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~~ 445 (764)
|.........++ ..+..++..| .+..+-...+.
T Consensus 319 ---------------------w~~ma~in~~dG------------------------~v~~~~~~a~~ll~~~v~~~ns~ 353 (671)
T COG3292 319 ---------------------WKRMAVINDSDG------------------------GVSQYEAVAPALLSWGVRQLNSI 353 (671)
T ss_pred ---------------------hhheeeeecCCC------------------------chhhhhccCchhcccceeecccc
Confidence 000000000000 0000011111 11112222222
Q ss_pred CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCeeeeEec--CcceEEEE
Q 004270 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEV--GCSLVKIV 522 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~--~~~i~~~~ 522 (764)
|.+.+-+-.+|....... ......|+.++++.+++ +-.++...-+..|+-++ +........ .+++..+.
T Consensus 354 g~L~van~stG~~v~sv~-------q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aiv 425 (671)
T COG3292 354 GELMVANGSTGELVRSVH-------QLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIV 425 (671)
T ss_pred ceEEEecCCCCcEEEEee-------eccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCCcccceeeee
Confidence 333333333443333321 12334566677777555 44455443344555555 333333222 26777888
Q ss_pred EeecCCEEEEEeCCCeEEEEEccCCeEEEEe--ecC---CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKF--EGH---TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597 (764)
Q Consensus 523 ~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~--~~h---~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 597 (764)
=.|+++ |..|+.+|.++. +.+.++....+ ..| .+.|..+..-|+|++-+.++ +| |..|+-+.....-.+..
T Consensus 426 ed~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~~~~~~~l~~ 501 (671)
T COG3292 426 EDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQRRMFVPILDL 501 (671)
T ss_pred ecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccccceecccccc
Confidence 888888 778888876654 33333332222 222 24577888999998654333 44 67887654332222222
Q ss_pred CCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 598 DVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 598 ~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
...-.-..+--.++++-.+- +. ++.-|.+.
T Consensus 502 ~~q~qy~f~~~~~d~vw~~~-~R-g~vr~r~s 531 (671)
T COG3292 502 TGQRQYSFVPVGGDEVWVHR-LR-GLVRWRHS 531 (671)
T ss_pred cceeeEEEEEccCceEeeee-ec-eeeeeccC
Confidence 21111111333556665544 33 35556654
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.59 E-value=0.81 Score=50.10 Aligned_cols=150 Identities=13% Similarity=0.189 Sum_probs=97.1
Q ss_pred CCEEEEEecCCcEEEEECcCCcccce------ecCcccc--------ccccccCcEEEEEECC--CCCEEEEEeCCCeEE
Q 004270 436 GNFAVLGTAGGWIERFNLQSGISRGS------YLDMSER--------SNYAHNGEVVGVACDS--TNTLMISAGYHGDIK 499 (764)
Q Consensus 436 g~~l~~g~~~g~i~i~~~~~~~~~~~------~~~~~~~--------~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~ 499 (764)
+++++++. .+.|.+|+......... +...+.. ........|+.|.+.. +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 77777765 77999999865433221 1000000 0011223466665544 447889999999999
Q ss_pred EEECCC-------C-------------CeeeeEecCcceEEEEEe--ecCCEEEEEeCCCeEEEEEccCC--eE-EEEee
Q 004270 500 VWDFKG-------R-------------DLKSRWEVGCSLVKIVYH--RVNGLLATVADDLVIRLFDVVAL--RM-VRKFE 554 (764)
Q Consensus 500 iwd~~~-------~-------------~~~~~~~~~~~i~~~~~s--~~~~~la~~~~d~~i~v~d~~~~--~~-~~~~~ 554 (764)
+|.+++ . ++...+..+...+.++++ ...+++|+++....|.||-.... +. ...-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 996521 0 122334455788999999 88899999999999988865442 11 11111
Q ss_pred cCCCCeeEEEEcCCC------cEEEEEeCCCcEEEEEc
Q 004270 555 GHTDRITDFCFSEDG------KWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 555 ~h~~~i~~l~~s~dg------~~l~s~s~dg~i~iwd~ 586 (764)
.|...|-+|+|-++. .+|++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 256679999997643 27888999999999888
No 422
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.55 E-value=1.3 Score=48.65 Aligned_cols=229 Identities=10% Similarity=0.075 Sum_probs=112.0
Q ss_pred CCEEEEEecCC------cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC------CcEEEEeCCC
Q 004270 103 GEHILSIDIDG------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWNIST 170 (764)
Q Consensus 103 g~~l~s~~~dg------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d------g~i~iwd~~~ 170 (764)
+..++.|+.++ .+..+|..+++-.. ...+ ........+..-.+ ...++|+.+ .++..||..+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~--~a~m--~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSS--LAPM--PSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEee--cCCC--CcccccccEEEECC--EEEEEccccCCCcccceEEEecCCC
Confidence 44455555553 47778877764311 1111 22222223333333 466778887 3567788776
Q ss_pred CeEEE--EEcCCCCCeEEEEEcCCCCEEEEEEcCCe-----EEEEEccCCceEEEEeccCCCCEEEEEE-eeCCCCEEEE
Q 004270 171 KKKLY--EFKGWGSSISSCVSSPALDVVAVGCSDGK-----IHVHNVRYDEELVTFTHSMRGAVTALAF-SSDGQPLLAS 242 (764)
Q Consensus 171 ~~~~~--~~~~h~~~i~~~~~sp~~~~la~g~~dg~-----i~iwd~~~~~~~~~~~~~~~~~v~~l~f-s~d~~~~l~s 242 (764)
.+=.. .+....... -.-.-+|.+-|+|+.||. |-.||..+.+--..-... ......+. .-+|. +.++
T Consensus 359 ~~W~~~a~M~~~R~~~--~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--~~r~~~gv~~~~g~-iYi~ 433 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDF--GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--TRRSGHGVAVLGGK-LYII 433 (571)
T ss_pred CceeccCCccCccccc--eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC--cceeeeEEEEECCE-EEEE
Confidence 65211 111111111 112235778889988854 677777765432222111 11122221 22566 7778
Q ss_pred EeCC------CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc-----EEEEEecCCCCCceeeEecc
Q 004270 243 GASS------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS-----IKMWIFDTTDGDPRLLRFRS 311 (764)
Q Consensus 243 g~~d------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~~~~~~~~~ 311 (764)
|+.+ .++..||..+++-...-.-.-...-..++. -++.+.+.||.|+. |..+|. ....+..+....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp--~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDP--ETNQWTMVAPMT 510 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcC--CCCceeEcccCc
Confidence 8754 357788887774332221001111112333 25667788887763 445544 344445553333
Q ss_pred CCCCCCeeEEEecCCCEEEEEeCCC-----cEEEEEeeccc
Q 004270 312 GHSAPPLCIRFYANGRHILSAGQDR-----AFRLFSVIQDQ 347 (764)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg-----~i~i~d~~~~~ 347 (764)
.....+-.... ++...+.|+.|| ++..||..+++
T Consensus 511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 33332222222 677778888776 35556554443
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.53 E-value=3.2 Score=42.13 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=41.7
Q ss_pred CCeeEEEEcC-------CCcEEEEEeCCCcEEEEEcCccceEEE-Ee----eCCceEEEEEcCCCCeEEEEEeCCCeEE
Q 004270 558 DRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQIDA-IH----VDVSITALSLSPNMDVLATAHVDQNGVY 624 (764)
Q Consensus 558 ~~i~~l~~s~-------dg~~l~s~s~dg~i~iwd~~~~~~~~~-~~----~~~~v~~l~~sp~g~~lat~~~d~~~i~ 624 (764)
..++.+.|-. .|.++++.-..+.|....+..+..+.. -. ....+..+++.|||.+.++...++. |+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~-iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGK-IY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTT-EE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCe-Ee
Confidence 4567777753 456777666667888888775533322 11 1225999999999999999887774 53
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.41 Score=48.04 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=103.7
Q ss_pred CCeEEEEEcCCCCC------eEEEEEcCCCCEEEEEEcCCeEEEEEcc--CCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270 170 TKKKLYEFKGWGSS------ISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (764)
Q Consensus 170 ~~~~~~~~~~h~~~------i~~~~~sp~~~~la~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~ 241 (764)
+|..-+.+-.|... -+.+-|....+ .+.+...|.+.=|-.+ .......+.....++|.++.|++|.+ .+|
T Consensus 5 sGalyhelihhPslfcnipesngvFfDDaNk-qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilA 82 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDDANK-QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILA 82 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeeccCcc-eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEE
Confidence 45555555544322 22333333333 3333344555555544 34455566666678999999999999 999
Q ss_pred EEeCCCcEEEEECCCceeeeeeec---ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270 242 SGASSGVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (764)
Q Consensus 242 sg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (764)
+--.+.+|.+++....+....... .....|.+..|+.+. -++..+.. -+.+|...... +.++..+.|...|+
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~pek---rslRlVks~~~nvn 157 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQ-GIEFYQVLPEK---RSLRLVKSHNLNVN 157 (657)
T ss_pred EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecC-CeEEEEEchhh---hhhhhhhhcccCcc
Confidence 999999999999744332222211 234468899998764 45555443 37778766554 44555678889999
Q ss_pred eEEEecCCCEEEEEe--CCCcEEEEEeec
Q 004270 319 CIRFYANGRHILSAG--QDRAFRLFSVIQ 345 (764)
Q Consensus 319 ~i~~~~~~~~l~s~~--~dg~i~i~d~~~ 345 (764)
-..|.++.+.++-++ ..+++.-+-+.+
T Consensus 158 Wy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 158 WYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEEEccccceEeeeccccccccccEEEee
Confidence 999999887665443 344444444443
No 425
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=1.2 Score=47.91 Aligned_cols=197 Identities=14% Similarity=0.178 Sum_probs=107.5
Q ss_pred eEEEEec-CceEEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCE
Q 004270 76 HIAVVKR-AHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNK 153 (764)
Q Consensus 76 ~i~vw~~-~~~~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 153 (764)
.|+||+. |..+.++.-..+++..+.| +..-|+....+|+++|+++-........+. .+.....+..|.+..+|
T Consensus 65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg-~e~~~~~I~ec~~f~~G---- 139 (829)
T KOG2280|consen 65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVG-FESQMSDIVECRFFHNG---- 139 (829)
T ss_pred eEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccc-cccccCceeEEEEecCc----
Confidence 3888886 5555553333347888888 467899999999999999866544211010 11222334555555566
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcC---CCCCeEEEEEcCCCC---EE-EEEEcCCeEEEEEccCC-ceEEEEeccCCC
Q 004270 154 VIVGSQEGSLQLWNISTKKKLYEFKG---WGSSISSCVSSPALD---VV-AVGCSDGKIHVHNVRYD-EELVTFTHSMRG 225 (764)
Q Consensus 154 l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~i~~~~~sp~~~---~l-a~g~~dg~i~iwd~~~~-~~~~~~~~~~~~ 225 (764)
+++-..+|.+.+-+-.....+++++. ..-+-+|-+.-+++. .+ .+.-..+ ..+....++ .....+... .+
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~-~~ 217 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWP-NS 217 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCC-Cc
Confidence 66666677776665333323344332 111212332222221 11 1111111 112222221 122223222 36
Q ss_pred CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC
Q 004270 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE 280 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~ 280 (764)
.+..++.||+.+ +|+--...|.|.+-+.+..+....+......+...++|.-+.
T Consensus 218 ~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRR-FLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcc-eEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 788999999998 888888999999998887776666553333333456665443
No 426
>PRK13684 Ycf48-like protein; Provisional
Probab=95.44 E-value=3.5 Score=41.92 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=85.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..+..+.+.+++.++++| ..|.+..-.-..++.-.... ..-...++++.+.++++.++.+ ..|.+++=..+
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 567888899988776655 44544432111222111111 1344678899999998876654 55776543344
Q ss_pred CCCeeeeEec-----CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee---cCCCCeeEEEEcCCCcEEEEEe
Q 004270 505 GRDLKSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 505 ~~~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~s~dg~~l~s~s 576 (764)
.+..-..... ...+..+.+.+++..++++ .+|.+. .....++.-.... +-....+.+.|..+++.++ .+
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G 320 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LG 320 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-EC
Confidence 4433222221 1457788899887766655 456554 3444444333332 2224577888887777666 45
Q ss_pred CCCcEEEEE
Q 004270 577 MDGSLRIWD 585 (764)
Q Consensus 577 ~dg~i~iwd 585 (764)
..|.|.-|+
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
Confidence 678887775
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.40 E-value=0.014 Score=62.83 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=94.7
Q ss_pred ccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECC--CCCeeeeEec------CcceEEEEEee---cCCEEEEEeCCCe
Q 004270 471 YAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK--GRDLKSRWEV------GCSLVKIVYHR---VNGLLATVADDLV 538 (764)
Q Consensus 471 ~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~--~~~~~~~~~~------~~~i~~~~~s~---~~~~la~~~~d~~ 538 (764)
++..+.|-.+.|.... ..+. -.-|.+.||++. .|+....+.. ...+..+.|.| +..++..+..++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 3667777777774321 1111 223678889876 4444333322 13344444444 6678888888999
Q ss_pred EEEEEccCCeEEEEeecCCCCeeEEE-----------EcCCCcEEEEEeCCCcEEEEEcC-cc----ceEEEEeeCCc--
Q 004270 539 IRLFDVVALRMVRKFEGHTDRITDFC-----------FSEDGKWLLSSGMDGSLRIWDVI-LA----RQIDAIHVDVS-- 600 (764)
Q Consensus 539 i~v~d~~~~~~~~~~~~h~~~i~~l~-----------~s~dg~~l~s~s~dg~i~iwd~~-~~----~~~~~~~~~~~-- 600 (764)
+++....+... ..+.+|..++++++ .||||..++.+..||.++.|.+. +| +++...+.|..
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p 285 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP 285 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence 99887765433 44566887777655 48999999999999999999764 22 33344444432
Q ss_pred -eEEEEEcCC---------CCeEEEEEeCCCeEEEEec
Q 004270 601 -ITALSLSPN---------MDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 601 -v~~l~~sp~---------g~~lat~~~d~~~i~lW~~ 628 (764)
|..+ ++.+ -.++++++.-+..+++|.-
T Consensus 286 ~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 286 RVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred ceeee-eccccccCCccceeEEEEecccCCcceeEeec
Confidence 3333 3322 1356666665557999975
No 428
>PRK10115 protease 2; Provisional
Probab=95.39 E-value=6.3 Score=44.56 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-----CcEEE
Q 004270 182 SSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISI 251 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-----g~i~i 251 (764)
-.+..+.+||++++|+.+... ..|++.|+.+|+.+...... .. ..++|++|++.++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346678899999999876432 45889999888644332222 12 5699999998555554422 46888
Q ss_pred EECCCc--eeeeeeecccccCee-EEEEecCCCEEEEEcC---CCcEEEEEecCC
Q 004270 252 WNLEKR--RLQSVIREAHDNAII-SLHFFANEPVLMSASA---DNSIKMWIFDTT 300 (764)
Q Consensus 252 wd~~~~--~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~---d~~i~vw~~~~~ 300 (764)
+++.++ +....+. ....... ....+.++++++..+. ++.+.+++.+..
T Consensus 204 h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~ 257 (686)
T PRK10115 204 HTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELA 257 (686)
T ss_pred EECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCC
Confidence 898887 3333333 2222233 3333447776554433 356777765443
No 429
>PHA03098 kelch-like protein; Provisional
Probab=95.26 E-value=0.95 Score=49.84 Aligned_cols=189 Identities=11% Similarity=0.064 Sum_probs=85.2
Q ss_pred EEeCCEEEEEecCC------cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEEEEeC
Q 004270 100 LLFGEHILSIDIDG------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNI 168 (764)
Q Consensus 100 ~~~g~~l~s~~~dg------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~iwd~ 168 (764)
..++..++.|+.++ .+..||..+.+... +..+..... ...+..-++ ...+.|+.+ ..+..||.
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~~~~~~~R~--~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK--VPELIYPRK--NPGVTVFNN--RIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE--CCCCCcccc--cceEEEECC--EEEEEeCCCCCEecceEEEEcC
Confidence 34555555555432 46677776655421 111111111 112222344 455666654 34777887
Q ss_pred CCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270 169 STKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240 (764)
Q Consensus 169 ~~~~~~~--~~~~h~~~i~~~~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l 240 (764)
.+.+-.. .+....... ++ ..-++++.+.|+.+ ..+..||..+++-...-.......-.+ +..-++. +.
T Consensus 366 ~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~-iy 441 (534)
T PHA03098 366 GESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC-AIYHDGK-IY 441 (534)
T ss_pred CCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce-EEEECCE-EE
Confidence 6653221 111111111 11 22356667777632 458889987664322111110111112 2233555 67
Q ss_pred EEEeCC--------CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecC
Q 004270 241 ASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDT 299 (764)
Q Consensus 241 ~sg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~ 299 (764)
+.|+.+ ..+.+||..+++-...-.......-.+++. -++..++.||.+ +.+.+||.++
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 777643 238889988765332211011111112222 266677777654 3455565443
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.24 E-value=0.6 Score=50.57 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=75.7
Q ss_pred CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEe--cCCCEEEEEcCCCcEEEEEe-----c
Q 004270 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMWIF-----D 298 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d~~i~vw~~-----~ 298 (764)
.++-+.-+.-++ ..++.+....+.|||.+.+...........+.|.++.|. |+++.+++.|..+.|.++.- .
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 444455555555 445555566899999998876555443457899999995 68889999999999998842 1
Q ss_pred CCCCCceeeEe--ccCCC-CCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 299 TTDGDPRLLRF--RSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 299 ~~~~~~~~~~~--~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
.....+..++. ...|+ .+|....|.++|..++.+| +.+.++|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11222222222 23344 6899999999996555543 347777643
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.24 Score=55.55 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=111.3
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECcCCcccceecC--------ccccccc-cccCcEEEEEECCCCCEEEE--EeCCC
Q 004270 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD--------MSERSNY-AHNGEVVGVACDSTNTLMIS--AGYHG 496 (764)
Q Consensus 428 ~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~--------~~~~~~~-~h~~~v~~l~~~~~~~~l~s--~~~dg 496 (764)
..++.++.-..++++...+.+.++-..+-.....-.+ ....... ...-.+..+.+.+|+...+. .+.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 3456666666666777777666665433211111100 0000111 12335666677777654443 33445
Q ss_pred eEEEEECCCCCeee--------eE----ecCcceEEEEEeecC-CEEEEEeCCCeEEEEEccCCeE-EEEeecCCCCeeE
Q 004270 497 DIKVWDFKGRDLKS--------RW----EVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITD 562 (764)
Q Consensus 497 ~v~iwd~~~~~~~~--------~~----~~~~~i~~~~~s~~~-~~la~~~~d~~i~v~d~~~~~~-~~~~~~h~~~i~~ 562 (764)
.|..||+.+-..-. .. ....-..++.|.|.- ...|+...|+.|+|..+..... +..+. -....++
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Ta 203 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTA 203 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceee
Confidence 78999987542211 11 111334566777643 2456667888888887654332 22222 4567899
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee-----CCceEEEEEcCCCCeEEEEE
Q 004270 563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVLATAH 617 (764)
Q Consensus 563 l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~v~~l~~sp~g~~lat~~ 617 (764)
++|+|.|+.++.|-..|++.-|.. +++....+.. ...|.+|+|-....||++=+
T Consensus 204 v~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred EEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 999999999999999999998873 3554444432 23499999999888887643
No 432
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=2.3 Score=38.30 Aligned_cols=174 Identities=15% Similarity=0.098 Sum_probs=101.3
Q ss_pred eCCEEEEEecCC--cEEEEEccCCcccccceeeEecCC--ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004270 102 FGEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDD--KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177 (764)
Q Consensus 102 ~g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 177 (764)
+|..+.+.+.-| .|++||+.+++. +.+.+... -+.-...-.-+. .....-.+|.-..+|.++.+++..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~----~~s~~l~~~~~FgEGit~~gd~---~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQE----IFSEKLAPDTVFGEGITKLGDY---FYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceE----EEEeecCCccccccceeeccce---EEEEEeccceeEEEChHHhhhhccc
Confidence 465666666544 499999998887 33333221 111111111121 2233447788899999999888777
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe----ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT----HSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd 253 (764)
.-. +.=+.+ ..|++.|..+.....++.-|.++-....+.. +..-..+..+.|- ||. +.|---.+..|...+
T Consensus 128 ~y~-GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~ 202 (262)
T COG3823 128 SYE-GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARID 202 (262)
T ss_pred ccC-Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEc
Confidence 542 222333 3456667777766778888877655444333 2112234445554 455 555555566677777
Q ss_pred CCCceeeeeee-----------cccccCeeEEEEecCCCEEEEEc
Q 004270 254 LEKRRLQSVIR-----------EAHDNAIISLHFFANEPVLMSAS 287 (764)
Q Consensus 254 ~~~~~~~~~~~-----------~~h~~~v~~l~~~~~~~~l~s~~ 287 (764)
.++|+.+..+. ..|.+-.+.+++.|++..++..+
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777766554 23455678899999875444433
No 433
>PHA03098 kelch-like protein; Provisional
Probab=94.68 E-value=2.3 Score=46.78 Aligned_cols=186 Identities=11% Similarity=0.058 Sum_probs=89.5
Q ss_pred EEecCCeEEEEEEeC------CeEEEEecCCCeEEEecCCC-CcceEEEEEeCCeEEEEECCe-------EEEEecCceE
Q 004270 21 VQRLGTENFVTVSVG------KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGNH-------IAVVKRAHQV 86 (764)
Q Consensus 21 ~~~~~~~~~~~~~~~------~~i~iwd~~~~~~~~~~~~~-~~~I~~~~~~~~~~~~a~g~~-------i~vw~~~~~~ 86 (764)
....++..++.++.+ +.+..||..+.+-....+.. +..-.+++...+..|+..|.. +..||.....
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 334566777777653 25788998887765443211 222234445566677666532 7777754321
Q ss_pred EE----ecccccceEEEEEeCCEEEEEecC------CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEE
Q 004270 87 AT----WSRHSAKVNLLLLFGEHILSIDID------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV 156 (764)
Q Consensus 87 ~~----~~~h~~~v~~l~~~g~~l~s~~~d------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 156 (764)
-+ +............++...+.|+.+ +.+..||..+.+-.. +..+. ......++...++ ...+.
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~--~~~~p--~~r~~~~~~~~~~--~iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK--GSPLP--ISHYGGCAIYHDG--KIYVI 443 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee--cCCCC--ccccCceEEEECC--EEEEE
Confidence 11 111111112233456666666632 357888887655421 11111 1111122333344 34455
Q ss_pred EeCC--------CcEEEEeCCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCc
Q 004270 157 GSQE--------GSLQLWNISTKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDE 214 (764)
Q Consensus 157 ~~~d--------g~i~iwd~~~~~~~~--~~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~ 214 (764)
|+.+ ..+.+||..+.+-.. .+.........+.+ ++.+.+.|+.+ +.+.+||..+++
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 5432 237888887654221 11111111122222 56666677654 457777766553
No 434
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.63 E-value=5.1 Score=39.59 Aligned_cols=159 Identities=16% Similarity=0.257 Sum_probs=95.4
Q ss_pred EEEEEECCCCCEEEE--EeC----------CCeEEEEECCCCCeeeeEecC-------cceEEEEEeecC-----CEEEE
Q 004270 477 VVGVACDSTNTLMIS--AGY----------HGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVN-----GLLAT 532 (764)
Q Consensus 477 v~~l~~~~~~~~l~s--~~~----------dg~v~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~-----~~la~ 532 (764)
|..+..++++++-+. |.. .-.|.+||+++++.++++..+ +.+..+.+.... .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 556666666654442 110 126888999999998888754 455667776632 24433
Q ss_pred Ee-CCCeEEEEEccCCeEEEEeecCC-------------------CCeeEEEEcC---CCcEEEEEeCCCcEEEEEcCcc
Q 004270 533 VA-DDLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSE---DGKWLLSSGMDGSLRIWDVILA 589 (764)
Q Consensus 533 ~~-~d~~i~v~d~~~~~~~~~~~~h~-------------------~~i~~l~~s~---dg~~l~s~s~dg~i~iwd~~~~ 589 (764)
+. ..+.|.|+|+.+++..+.+..+. ..+..++.+| ||++|.-....+ -++|.+++.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 34689999999988766654321 2366677765 777887766544 355555431
Q ss_pred --------------ceEEEEee-CCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccCCCCC
Q 004270 590 --------------RQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 637 (764)
Q Consensus 590 --------------~~~~~~~~-~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~~~~~ 637 (764)
+.+..+.. ......++++++|....+--... +|..|+.+..|.+...
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~-aI~~w~~~~~~~~~~~ 223 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN-AIGCWDPDGPYTPENF 223 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT-EEEEEETTTSB-GCCE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC-eEEEEeCCCCcCccch
Confidence 12222222 23477899999888777776666 7999999988876554
No 435
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.50 E-value=8.9 Score=41.81 Aligned_cols=397 Identities=11% Similarity=0.101 Sum_probs=168.9
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC--------CeEE-EEEcCCCCCeEEEEEcC-----CCCEEEEE--EcCC
Q 004270 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNIST--------KKKL-YEFKGWGSSISSCVSSP-----ALDVVAVG--CSDG 203 (764)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~--------~~~~-~~~~~h~~~i~~~~~sp-----~~~~la~g--~~dg 203 (764)
...++..|.+ +.++++..+|.+.++-++. ...+ ..+ .....|..++|-. +...+|+- ...+
T Consensus 46 G~~l~vDP~~--R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 46 GQYLAVDPSG--RCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp --EEEE-TTS--SEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred CcEEEECCcC--CEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 4567899999 8999999999999998877 1111 111 1256778888875 22344432 2222
Q ss_pred --eEEEEEccCCceEEE----------EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc---eeeeeeec---
Q 004270 204 --KIHVHNVRYDEELVT----------FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIRE--- 265 (764)
Q Consensus 204 --~i~iwd~~~~~~~~~----------~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~--- 265 (764)
.+..++......+.. +......+..-+....... .++.++ ++.+.+-+.... .....+..
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g-gllV~~-~~~i~y~~~~~~~~~~~~~~~~~~~~ 200 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG-GLLVGG-ENIIIYKNHLIGSGDYSFLSIPSPPS 200 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT--SEEEEE-SSEEEEEE------TTEEEEE--H-H
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc-EEEEEC-CEEEEEecccccccccccccccCCcc
Confidence 234443222211111 1111112222222222122 333443 233333322111 11111110
Q ss_pred ccccCeeEEEE-------ecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC-CCCCeeEEEecCC-CEEEEEeCCC
Q 004270 266 AHDNAIISLHF-------FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANG-RHILSAGQDR 336 (764)
Q Consensus 266 ~h~~~v~~l~~-------~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~s~~~dg 336 (764)
....-+.+... ..++..++.+..+|.+....+..... .+....-+. .....++.+..+| .+++.|+.-|
T Consensus 201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~g 278 (504)
T PF10433_consen 201 SSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFG 278 (504)
T ss_dssp HHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS
T ss_pred CCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecC
Confidence 01222333332 34566888889999998887765432 111222223 4555677776554 3777777655
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc------ceeEeee--CCceEEEEEcc
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC------NVVTCHM--DTAQAYVWRLQ 408 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~w~~~ 408 (764)
.=.++.+.... +.....-....|+..+........... .++++.. ..+.+++..-.
T Consensus 279 ds~l~~~~~~~----------------l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G 342 (504)
T PF10433_consen 279 DSQLLQISLSN----------------LEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG 342 (504)
T ss_dssp -EEEEEEESES----------------EEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES
T ss_pred CcEEEEEeCCC----------------cEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc
Confidence 54444443111 111122234667877777654433333 6666654 34566555432
Q ss_pred ceeec-ceeecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECc---CCcccceecCccccccccccCcEEEEEEC
Q 004270 409 NFVLG-EHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ---SGISRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 409 ~~~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
-...+ .......++ ...+..+.... ++.++++...+. -.++.+. .......... . ........+.+-.+.
T Consensus 343 i~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~-~--~f~~~~~Tl~~~~~~ 417 (504)
T PF10433_consen 343 IGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEE-D--GFDTDEPTLAAGNVG 417 (504)
T ss_dssp BEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE------TS-SSS-EEEEEEET
T ss_pred CCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhh-c--cCCCCCCCeEEEEcC
Confidence 11110 000000000 12222222221 246777766654 3344443 2222111100 0 000111122222222
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee-c----CCC
Q 004270 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G----HTD 558 (764)
Q Consensus 484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~-~----h~~ 558 (764)
+..++=... ..|++.+...++....+.......-++.+-++.+++++..++.+..+.+.......... . ...
T Consensus 418 --~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 --DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp --TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred --CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 333433333 45888888888877777665333333334446788888889999999998776643332 1 457
Q ss_pred CeeEEEEcC
Q 004270 559 RITDFCFSE 567 (764)
Q Consensus 559 ~i~~l~~s~ 567 (764)
.|.++..+|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788887766
No 436
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=94.48 E-value=12 Score=43.20 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=78.4
Q ss_pred CEEEEEec---------CCcEEEEECcC-----CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 437 NFAVLGTA---------GGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 437 ~~l~~g~~---------~g~i~i~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
.++++|+. .|.+++||+-. |++...... ........++.|..++= -+|. |+++. ...|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~Kl-Kel~~eE~KGtVsavce-V~G~-l~~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKL-KELYIEEQKGTVSAVCE-VRGH-LLSSQ-GQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCccccee-eeeehhhcccceEEEEE-eccE-EEEcc-CcEEEEEE
Confidence 47788754 58999999733 222111110 00011245667766653 2454 44433 35899999
Q ss_pred CC-CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE-EEEeec--CCCCeeEEEEcCCCc--EEEEEe
Q 004270 503 FK-GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEG--HTDRITDFCFSEDGK--WLLSSG 576 (764)
Q Consensus 503 ~~-~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~-~~~~~~--h~~~i~~l~~s~dg~--~l~s~s 576 (764)
++ ...++..--..-++.-.....-.+++..|.--..|.+.-.+..-. +.-+.. ..-.+.++.|--||. +++++.
T Consensus 1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 94 443332221222333333333356777776666666655443221 222211 123477888877775 567788
Q ss_pred CCCcEEEEEcC
Q 004270 577 MDGSLRIWDVI 587 (764)
Q Consensus 577 ~dg~i~iwd~~ 587 (764)
.|++|+++-..
T Consensus 1203 a~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1203 ADRNIHVYMYA 1213 (1366)
T ss_pred CCCcEEEEEeC
Confidence 99999988543
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=7 Score=45.49 Aligned_cols=162 Identities=15% Similarity=0.277 Sum_probs=90.2
Q ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE--------cCCCCEEEEEEcCCeEEEEEccCCceE---------EEEec
Q 004270 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVS--------SPALDVVAVGCSDGKIHVHNVRYDEEL---------VTFTH 221 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~--------sp~~~~la~g~~dg~i~iwd~~~~~~~---------~~~~~ 221 (764)
.|+.+.+||++++.....+.+....|..+.. -|.-+++++-+.--.|.++-+..++.. .++..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 5678999999998888888887777777643 344445554444456777755422211 11112
Q ss_pred cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC
Q 004270 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 301 (764)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~ 301 (764)
. ...|.++....+|+ ++.+ +.|| .+|.+. .....+-.+. ...+.-.+.+.-..+.
T Consensus 177 d-g~~V~~I~~t~nGR-IF~~-G~dg--~lyEl~-----Yq~~~gWf~~-------rc~Kiclt~s~ls~lv-------- 231 (1311)
T KOG1900|consen 177 D-GVSVNCITYTENGR-IFFA-GRDG--NLYELV-----YQAEDGWFGS-------RCRKICLTKSVLSSLV-------- 231 (1311)
T ss_pred C-CceEEEEEeccCCc-EEEe-ecCC--CEEEEE-----EeccCchhhc-------ccccccCchhHHHHhh--------
Confidence 1 45688888777887 5554 4556 444431 0000000000 0000111111000000
Q ss_pred CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccc
Q 004270 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (764)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~ 347 (764)
+.++.....+..+|..+.....-..+.+-+..|++++|++....
T Consensus 232 --Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 232 --PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred --hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 01111113677899999998877888899999999999998743
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.22 E-value=8 Score=40.14 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceE-EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---
Q 004270 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--- 258 (764)
Q Consensus 183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--- 258 (764)
....+..++++.+++++..-..++-|| .|... ..........++++.|.+++. +++++ ..|.+. +....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEE-EecCCCCccc
Confidence 345567788888888776533233343 33322 233333356799999999998 55544 556654 3334443
Q ss_pred --eeeeeecc-cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC
Q 004270 259 --LQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (764)
Q Consensus 259 --~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 335 (764)
........ -...+.++.|.+++..+++ +..|.+... ......+........-....+.+.|.++++-++ .+.+
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~ 390 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGND 390 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCC
Confidence 12222211 1235889999988765554 556766654 222222233222233456778888877665444 4567
Q ss_pred CcEEEE
Q 004270 336 RAFRLF 341 (764)
Q Consensus 336 g~i~i~ 341 (764)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 766544
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.22 E-value=6.3 Score=38.98 Aligned_cols=145 Identities=10% Similarity=0.056 Sum_probs=77.3
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEE-ccCCeE
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRM 549 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d-~~~~~~ 549 (764)
.-.+.+..+..+++|++++++..-..+.-||--.. =..+.......|..|.|.|++.+.+++ ..|.|+.=+ ....+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 44577888999999998888876555667764322 122233345889999999998877655 888888877 222222
Q ss_pred EEE----eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee----CCceEEEEEcCCCCeEEEEEeCC
Q 004270 550 VRK----FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 550 ~~~----~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
... +....-.+.+++|.+++...++|+ .|++ +.....|+-=..-+. +.....+.|.++.+-+|.+ .++
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G 296 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDG 296 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCc
Confidence 211 111223478999999988777665 4533 344555654444432 3458889998765555554 455
No 440
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.10 E-value=2.3 Score=45.67 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=50.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~ 551 (764)
.|.+.|--+..+..+..|+.-...-.+.++|+.+.+....+. -.+-+.|-|-+..++.-+.|....-|+++-.+.+.
T Consensus 335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmiln---fcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt 411 (1636)
T KOG3616|consen 335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILN---FCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVT 411 (1636)
T ss_pred cccccccceeccchhhhhhcccccceeEEEEcccchHHHHHH---HhhhheeccCcceEEecCCCceEEEecCCcchhhe
Confidence 788998888888877777776666778888888654322221 23446788877777666655444444555544444
Q ss_pred Ee
Q 004270 552 KF 553 (764)
Q Consensus 552 ~~ 553 (764)
.+
T Consensus 412 ~~ 413 (1636)
T KOG3616|consen 412 MF 413 (1636)
T ss_pred ee
Confidence 43
No 441
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.08 E-value=6.1 Score=38.24 Aligned_cols=242 Identities=12% Similarity=0.133 Sum_probs=125.3
Q ss_pred CEEEEEEeeCCCCEEEEEeCCCcEEEEECC------Cc-eeeeeeec--c--cccCeeEEEEecCCC------------E
Q 004270 226 AVTALAFSSDGQPLLASGASSGVISIWNLE------KR-RLQSVIRE--A--HDNAIISLHFFANEP------------V 282 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~------~~-~~~~~~~~--~--h~~~v~~l~~~~~~~------------~ 282 (764)
.-..|+|+|.+. +-++....+...+||.. .. .++..+.. + .....+.+.|+.... .
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 346799999887 66776777899999986 12 22333331 1 234677777764322 3
Q ss_pred EEEEcCCCcEEEEEecCCCCC--ceeeEeccCCCCCC-eeEEEec--CCCEEEEE-eCCCcEEEEEeecccccccccchh
Q 004270 283 LMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPP-LCIRFYA--NGRHILSA-GQDRAFRLFSVIQDQQSRELSQRH 356 (764)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v-~~i~~~~--~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~ 356 (764)
++.+++||+|.-|.-...... ...+..-.+....| ..+++.. .+.+|..+ -..++|.+||-.-..... . +.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~-g~ 179 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--P-GS 179 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--C-CC
Confidence 677889999999964322110 01111111112222 3344443 24455444 356778887643221100 0 00
Q ss_pred hhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC
Q 004270 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 436 (764)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 436 (764)
+... .+|. .++. -++... .+. -.|+-..-.+++
T Consensus 180 ---------F~DP--~iPa--gyAP--------FnIqni---g~~-----------------------lyVtYA~qd~~~ 212 (336)
T TIGR03118 180 ---------FIDP--ALPA--GYAP--------FNVQNL---GGT-----------------------LYVTYAQQDADR 212 (336)
T ss_pred ---------ccCC--CCCC--CCCC--------cceEEE---CCe-----------------------EEEEEEecCCcc
Confidence 0000 0000 0000 000000 000 112222223334
Q ss_pred CEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC------CCCEEEEEeCCCeEEEEECCCCCeee
Q 004270 437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS------TNTLMISAGYHGDIKVWDFKGRDLKS 510 (764)
Q Consensus 437 ~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~ 510 (764)
+.=+.|...|.|.+||+... .++.+.. .+.-..-.+|+..| .+.+|+---.||+|..+|..+++.+.
T Consensus 213 ~d~v~G~G~G~VdvFd~~G~-l~~r~as------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 213 NDEVAGAGLGYVNVFTLNGQ-LLRRVAS------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred cccccCCCcceEEEEcCCCc-EEEEecc------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 44455566678888887643 3333321 24445667788765 45777766689999999999998777
Q ss_pred eEecC-------cceEEEEEee
Q 004270 511 RWEVG-------CSLVKIVYHR 525 (764)
Q Consensus 511 ~~~~~-------~~i~~~~~s~ 525 (764)
.+... ..++.++|..
T Consensus 286 ~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 286 QLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eecCCCCCeEEecCeEEeeeCC
Confidence 76543 4456677655
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=4.6 Score=43.89 Aligned_cols=216 Identities=12% Similarity=0.124 Sum_probs=112.6
Q ss_pred CcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEE--CCeEEEEecCceEEEe-----
Q 004270 17 VPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQVATW----- 89 (764)
Q Consensus 17 v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~--g~~i~vw~~~~~~~~~----- 89 (764)
-|.++.+.+.+..=.++.-..|+||+....-+-...-.|. ++-.|-|+.+..++.. .+.+.||+.-.+....
T Consensus 45 GpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~ 123 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGF 123 (829)
T ss_pred CceEEEecccccccccccceeEEEEeccccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhccccccc
Confidence 3444444333333223444568888866544433333333 7888999999666654 4559999864433322
Q ss_pred cccccceEEEEEeCCEEEEEecCCcEEEEEc-cCCcccccceeeEecCCccccEEEEeCCCCCCEEEEE-e-CCCcEEEE
Q 004270 90 SRHSAKVNLLLLFGEHILSIDIDGNMFIWAF-KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG-S-QEGSLQLW 166 (764)
Q Consensus 90 ~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~-~-~dg~i~iw 166 (764)
......|....+.++-++.-..+|.+.+-+- +...... ...+++..-...+..+.++.+...++.. . ..+ ..+.
T Consensus 124 e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~--~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~ 200 (829)
T KOG2280|consen 124 ESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRK--MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHIC 200 (829)
T ss_pred ccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhh--CCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccc
Confidence 1223345555555566666666776554332 2211111 1111111111111122222221111111 1 111 1112
Q ss_pred eCCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCC
Q 004270 167 NISTK-KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (764)
Q Consensus 167 d~~~~-~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (764)
-..++ ...+.+..-.+.+..+..||+.++||--..+|.|.+-+.+..+....+......+...++|..+.
T Consensus 201 q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 201 QVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 11111 12223333246788999999999999999999999999998888888875444455567776554
No 443
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.04 E-value=8.7 Score=39.94 Aligned_cols=259 Identities=14% Similarity=0.141 Sum_probs=139.1
Q ss_pred CCeEEEEEEeCCeEEEEecCCCe-----EEEecCCCCcceEEEEEeC-----CeEEEE--ECCeEEEEec----Cc----
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLN-----LVLVGPQLPKKIRALASYR-----DYTFAA--YGNHIAVVKR----AH---- 84 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~I~~~~~~~-----~~~~~a--~g~~i~vw~~----~~---- 84 (764)
+.+.++++|..|.++||+..... ++.. .....+|-.|+.-+ +...+| .-..+.||.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 56799999999999999997643 3333 35678898887532 222222 2444777753 11
Q ss_pred ---eEEEecccccceEEEE----Ee-----CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCC
Q 004270 85 ---QVATWSRHSAKVNLLL----LF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLN 152 (764)
Q Consensus 85 ---~~~~~~~h~~~v~~l~----~~-----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 152 (764)
.+.....|.-.-++.. ++ -++++.-+.||.+.+++-+.... ...++. --....+++.+.. +
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~-~llPgPl~Y~~~t--D 187 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPD-FLLPGPLCYCPRT--D 187 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCC-CCCCcCeEEeecC--C
Confidence 1222334433333222 12 36788899999999999776543 111111 1122234566666 6
Q ss_pred EEEEEeCCCcEEEEeCCC--------------------Ce---EEEEEcCCCCCeEEE---EEcCCCCEEEEEEcCCeEE
Q 004270 153 KVIVGSQEGSLQLWNIST--------------------KK---KLYEFKGWGSSISSC---VSSPALDVVAVGCSDGKIH 206 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~--------------------~~---~~~~~~~h~~~i~~~---~~sp~~~~la~g~~dg~i~ 206 (764)
.+++++.+..+.-|.... ++ .-+++.- +..+..+ .++.....+++-+. .++.
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLge-r~Lf 265 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGE-RSLF 265 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEec-ceEE
Confidence 788888888888886421 11 1122222 2333333 33323333443333 4566
Q ss_pred EEEccCCceEEEEeccCCCCEEEEEEee------CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEE---Ee
Q 004270 207 VHNVRYDEELVTFTHSMRGAVTALAFSS------DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLH---FF 277 (764)
Q Consensus 207 iwd~~~~~~~~~~~~~~~~~v~~l~fs~------d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~---~~ 277 (764)
..+. +|......+.. -.+...+.|.. +....++.++.++++.||. ..+++......| .+| ++. |.
T Consensus 266 ~l~~-~G~l~~~krLd-~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~-~PV-al~v~~~~ 339 (418)
T PF14727_consen 266 CLKD-NGSLRFQKRLD-YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPH-VPV-ALSVANFN 339 (418)
T ss_pred EEcC-CCeEEEEEecC-CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCC-CCE-EEEecccC
Confidence 6664 45444444332 22233333332 2222578888999999996 334444443112 222 332 22
Q ss_pred cCCCEEEEEcCCCcEEEEEecC
Q 004270 278 ANEPVLMSASADNSIKMWIFDT 299 (764)
Q Consensus 278 ~~~~~l~s~~~d~~i~vw~~~~ 299 (764)
.-...+++-+.+|.+.+--+-+
T Consensus 340 ~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 340 GLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CCCceEEEEcCCCcEEEEEeCC
Confidence 2334788888888888764433
No 444
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.83 E-value=3.8 Score=45.16 Aligned_cols=102 Identities=11% Similarity=0.152 Sum_probs=72.8
Q ss_pred EEEEEeCCCcEEEEECCCc--------------------eeeeeeecccccCeeEEEEe--cCCCEEEEEcCCCcEEEEE
Q 004270 239 LLASGASSGVISIWNLEKR--------------------RLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~--------------------~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d~~i~vw~ 296 (764)
+|+.+..||.|.+|.+++- ++...+ .-...+++++++ ...+++|.++....|.||-
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 8889999999999975211 011122 234578999998 7788999999889999998
Q ss_pred ecCCCCCceeeEeccCCCCCCeeEEEecCC---C---EEEEEeCCCcEEEEEe
Q 004270 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANG---R---HILSAGQDRAFRLFSV 343 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~---~---~l~s~~~dg~i~i~d~ 343 (764)
+........... -..|...|.+|+|.++. . .+++++-.|.+.+|++
T Consensus 194 f~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 876422211111 22477789999998733 2 7778899999999888
No 445
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.71 E-value=7.1 Score=37.79 Aligned_cols=236 Identities=12% Similarity=0.126 Sum_probs=128.3
Q ss_pred CeeEEEEecCCCEEEEEcCCCcEEEEEecCCC--CCc-eeeEeccC-----CCCCCeeEEEecCCCE------------E
Q 004270 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDP-RLLRFRSG-----HSAPPLCIRFYANGRH------------I 329 (764)
Q Consensus 270 ~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~--~~~-~~~~~~~~-----h~~~v~~i~~~~~~~~------------l 329 (764)
.-+.++++|.+.+-++....+...+||.+... +.+ .++..... ....++.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888888888899999876221 111 22222221 2346788888753333 5
Q ss_pred EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
+.+++||+|.-|...-+..... ..+.+.|-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~------------------------------------------------~~~~~~d~s- 134 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMT------------------------------------------------RAEIVVDAS- 134 (336)
T ss_pred EEEeCCceEEeecCcCCccccc------------------------------------------------ccEEEEccC-
Confidence 6677888888887432211000 000000000
Q ss_pred eeecceeecCCCCCCCCeEEEEEcc--CCCEEEEE-ecCCcEEEEECcCCccc--ceecCccccc--------cccccCc
Q 004270 410 FVLGEHILRPCPENPTAVKACTISA--CGNFAVLG-TAGGWIERFNLQSGISR--GSYLDMSERS--------NYAHNGE 476 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g-~~~g~i~i~~~~~~~~~--~~~~~~~~~~--------~~~h~~~ 476 (764)
.....-+.+++.. .+++|..+ ..+++|.+||-.-.... ..+.++.... ..+..-.
T Consensus 135 ------------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~ly 202 (336)
T TIGR03118 135 ------------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLY 202 (336)
T ss_pred ------------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEE
Confidence 0012223344433 34555444 45788999876533221 1122111000 0000111
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEee------cCCEEEEEeCCCeEEEEEccCC
Q 004270 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~------~~~~la~~~~d~~i~v~d~~~~ 547 (764)
|+-..-+++.+.=+.+..-|.|-+||.. +++++++... ...+.|+..| .+.+|+--..||+|..||..++
T Consensus 203 VtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 203 VTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 2222223333223334445789999965 6677777555 4556677755 4667777788999999999999
Q ss_pred eEEEEeecCCC------CeeEEEEcC
Q 004270 548 RMVRKFEGHTD------RITDFCFSE 567 (764)
Q Consensus 548 ~~~~~~~~h~~------~i~~l~~s~ 567 (764)
+.+..+....+ ....|+|-.
T Consensus 282 ~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 282 AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 98888876443 356677754
No 446
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.70 E-value=9.1 Score=38.97 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=109.9
Q ss_pred EEEEeCCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcC----CCCE--EEEEEc-C---CeEEEEEc
Q 004270 142 TCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP----ALDV--VAVGCS-D---GKIHVHNV 210 (764)
Q Consensus 142 ~~~~~p~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp----~~~~--la~g~~-d---g~i~iwd~ 210 (764)
.+..+|...- .+|+....++-+.+||+ .|+.++.+.. +.++.+..-. .|+. ||+++. + .+|++|.+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 3445543322 46777778888999998 6778787752 3455544321 3332 444443 2 47999988
Q ss_pred cCC-ceEEEEecc------CCCCEEEEEEe--e-CCCCEEEEEeCCCcEEEEECC---Cc----eeeeeeecccccCeeE
Q 004270 211 RYD-EELVTFTHS------MRGAVTALAFS--S-DGQPLLASGASSGVISIWNLE---KR----RLQSVIREAHDNAIIS 273 (764)
Q Consensus 211 ~~~-~~~~~~~~~------~~~~v~~l~fs--~-d~~~~l~sg~~dg~i~iwd~~---~~----~~~~~~~~~h~~~v~~ 273 (764)
... ..+..+... .-..+..+++- + +|..+++....+|.+.-|.+. .+ ++++.+. -.+.+..
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EG 212 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEG 212 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEE
T ss_pred cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceE
Confidence 632 233333211 12346677764 3 466567778889988877664 33 3455554 3457888
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEecCCCCC-ceeeEecc--CCCCCCeeEEEec--CC-CEEEEEe-CCCcEEEEEeec
Q 004270 274 LHFFANEPVLMSASADNSIKMWIFDTTDGD-PRLLRFRS--GHSAPPLCIRFYA--NG-RHILSAG-QDRAFRLFSVIQ 345 (764)
Q Consensus 274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~--~h~~~v~~i~~~~--~~-~~l~s~~-~dg~i~i~d~~~ 345 (764)
+........|+.+-.+.-|.-|+.+...+. .+.+.... +....+..++... ++ .+|+..+ .+++..+|+...
T Consensus 213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 888888889999887755544444433322 23333332 3456888888865 33 3455444 577899999753
No 447
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.54 E-value=4.5 Score=41.01 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=94.0
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCe------EEEEECCC--C--Ce---eeeEe--cC---------cceEEEEEeecCC
Q 004270 473 HNGEVVGVACDSTNTLMISAGYHGD------IKVWDFKG--R--DL---KSRWE--VG---------CSLVKIVYHRVNG 528 (764)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~~dg~------v~iwd~~~--~--~~---~~~~~--~~---------~~i~~~~~s~~~~ 528 (764)
.-+.+.+|.+.+++..+++.+.+|. +..+++.. + .. ..... .. ....++++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3466788999976666777777777 65555543 1 00 11111 11 1345788877788
Q ss_pred EEEEEeCC------CeEEEEEccCCeEEEEee---------------cCCCCeeEEEEcCCCcEEEEEeC-----CC--c
Q 004270 529 LLATVADD------LVIRLFDVVALRMVRKFE---------------GHTDRITDFCFSEDGKWLLSSGM-----DG--S 580 (764)
Q Consensus 529 ~la~~~~d------~~i~v~d~~~~~~~~~~~---------------~h~~~i~~l~~s~dg~~l~s~s~-----dg--~ 580 (764)
++++.-.+ ..|+.++.. |+....+. .......+|+++|||+.|+++.+ |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77777667 788888876 66554441 12345789999999996665543 22 1
Q ss_pred -------EEEE--EcCc-cceEEEE--eeC--------CceEEEEEcCCCCeEEEEEe----CCCeEEEEecc
Q 004270 581 -------LRIW--DVIL-ARQIDAI--HVD--------VSITALSLSPNMDVLATAHV----DQNGVYLWVNR 629 (764)
Q Consensus 581 -------i~iw--d~~~-~~~~~~~--~~~--------~~v~~l~~sp~g~~lat~~~----d~~~i~lW~~~ 629 (764)
++++ |..+ ++....+ +.. ..+..+.+-+++++|+.-=. .+..++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 4554 5444 3333333 222 34889999999998775332 22345555544
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.52 E-value=3.3 Score=37.94 Aligned_cols=103 Identities=13% Similarity=0.218 Sum_probs=66.3
Q ss_pred CEEEEEeCCCeEEEEEcc--CCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC---C---cEEEE---EcC--ccce---
Q 004270 528 GLLATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---G---SLRIW---DVI--LARQ--- 591 (764)
Q Consensus 528 ~~la~~~~d~~i~v~d~~--~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d---g---~i~iw---d~~--~~~~--- 591 (764)
+.|.++.....|.+|++. ..+++.+|..- +.|..+.++..|.||+|-=.+ . .+|+| +.. ..++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455455777889999988 34556667644 789999999999999985322 2 56775 222 1111
Q ss_pred ------------------EE--EEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccccC
Q 004270 592 ------------------ID--AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS 633 (764)
Q Consensus 592 ------------------~~--~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~~~ 633 (764)
+. .++...++.+++-.|-.--|+.|+.+ .+.||.++....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~ 167 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTI 167 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEE
Confidence 11 12234457888888844445555545 499999876544
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.40 E-value=17 Score=41.07 Aligned_cols=93 Identities=11% Similarity=0.194 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~ 260 (764)
-.|..+.++|+|++||..+..| |.|..+.. ...-..+..+ ...|.|-.+.=+.. ++ .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g-~~~i~Crt~~v~~~-~~-~------------------ 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDG-KKEINCRTVPVDER-FF-T------------------ 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCC-CcceeEEEEEechh-hc-c------------------
Confidence 4677888999999999888865 44444431 1111222222 22333333322221 11 1
Q ss_pred eeeecccccCeeEEEEecC---CCEEEEEcCCCcEEEEEecCC
Q 004270 261 SVIREAHDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 261 ~~~~~~h~~~v~~l~~~~~---~~~l~s~~~d~~i~vw~~~~~ 300 (764)
..+...|..+.|+|. +..|+.-..|+++|+||+...
T Consensus 143 ----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 ----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 123446777788875 467888888888888888644
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=2.8 Score=37.80 Aligned_cols=172 Identities=12% Similarity=0.048 Sum_probs=105.5
Q ss_pred CCCEEEEEec--CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCeeee
Q 004270 435 CGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSR 511 (764)
Q Consensus 435 ~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~ 511 (764)
+|.++.+.+. ...|++||+.+|+...+....+ ..+.+=-...-+.++ .-.-.+|.-..+|.++.+.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--------~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--------DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--------ccccccceeeccceEEEEEeccceeEEEChHHhhhhcc
Confidence 3444444433 3489999999998877654211 111111111112222 2334678888999999888888
Q ss_pred EecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee----cC-CCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE----GH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 512 ~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~----~h-~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
+..++.-..++. |+.-|..+....+++.-|-++.....+.. |. -..++.+.|- ||...|-.=.+..|..-|.
T Consensus 127 ~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 127 FSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP 203 (262)
T ss_pred cccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence 877766665554 45667777777788888877654443332 21 1334445554 6766666666667777888
Q ss_pred CccceEEEEeeC-------------CceEEEEEcCCCCeEEEEE
Q 004270 587 ILARQIDAIHVD-------------VSITALSLSPNMDVLATAH 617 (764)
Q Consensus 587 ~~~~~~~~~~~~-------------~~v~~l~~sp~g~~lat~~ 617 (764)
.+|+.+..+... ...+.+++.|++..+...+
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 889888877532 1378899999885554443
No 451
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.15 E-value=9 Score=40.30 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=60.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee--eE----e--cCcceEEEEEeecC------CEEEEEe------
Q 004270 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RW----E--VGCSLVKIVYHRVN------GLLATVA------ 534 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~----~--~~~~i~~~~~s~~~------~~la~~~------ 534 (764)
...+.|+|.|++++|++--..|.|++++-.++.... .+ . .......++++|+- ++|.+..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 456889999999888776657999999865543211 11 1 24678899999874 3444432
Q ss_pred ----CCCeEEEEEccCC-------e-EEEEee---cCCCCeeEEEEcCCCcEEEEEeCC
Q 004270 535 ----DDLVIRLFDVVAL-------R-MVRKFE---GHTDRITDFCFSEDGKWLLSSGMD 578 (764)
Q Consensus 535 ----~d~~i~v~d~~~~-------~-~~~~~~---~h~~~i~~l~~s~dg~~l~s~s~d 578 (764)
....|.-|.+... + ++..+. .|. -..|+|.|||.+.++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 1234444544311 1 111121 233 3568899999877766543
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.04 E-value=2.7 Score=43.24 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=89.7
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-------EEEEEEcCCeEEEEEccC-CceEEEEec---cC
Q 004270 155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRY-DEELVTFTH---SM 223 (764)
Q Consensus 155 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-------~la~g~~dg~i~iwd~~~-~~~~~~~~~---~~ 223 (764)
..|.....++-.|++.|+.+.++..|... -+.|.|..+ .-++|-++..|.-.|.+- |..+..... ..
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence 34666677888899999999999987765 567777532 234566666666666553 322222111 00
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
.....+..-...| ++|+|+..|.|++||--..+....+. +....|..+..+.+|.++++.+. ..+.+-|+.
T Consensus 562 Kn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccccccccCc--eEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1223333333334 79999999999999965444444455 78889999999999998777664 456665554
No 453
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.94 E-value=0.53 Score=30.24 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCC---CEEEEEEcCCeEEEEEccCC
Q 004270 182 SSISSCVSSPAL---DVVAVGCSDGKIHVHNVRYD 213 (764)
Q Consensus 182 ~~i~~~~~sp~~---~~la~g~~dg~i~iwd~~~~ 213 (764)
++|.++.|||+. ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 454
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.80 E-value=9 Score=36.35 Aligned_cols=235 Identities=12% Similarity=0.073 Sum_probs=141.4
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee
Q 004270 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~ 260 (764)
...-..++-+|||..-.++...|.|--.|..+|+....-... ...-..+..-|||. .-++-+.. -|.-.|-++.+..
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~-Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS-GASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCC-CCCCceEEECCCCC-eeEecCcc-eeEEecCcccceE
Confidence 345567888999998888888888888898888765544332 55677888888887 33332222 5555665555332
Q ss_pred ee-eec-ccccCeeEEEEecCCCEEEEEcCC---------CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270 261 SV-IRE-AHDNAIISLHFFANEPVLMSASAD---------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (764)
Q Consensus 261 ~~-~~~-~h~~~v~~l~~~~~~~~l~s~~~d---------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (764)
.- +.. .-........|.+.|++-+++... +.|++|.. ........|+..|||..-
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--------------PqG~gpyGi~atpdGsvw 203 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--------------PQGGGPYGICATPDGSVW 203 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc--------------CCCCCCcceEECCCCcEE
Confidence 21 111 224567788899999887777531 23344422 233456778888998877
Q ss_pred EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
++.-.+..|...|..... ..
T Consensus 204 yaslagnaiaridp~~~~-ae----------------------------------------------------------- 223 (353)
T COG4257 204 YASLAGNAIARIDPFAGH-AE----------------------------------------------------------- 223 (353)
T ss_pred EEeccccceEEcccccCC-cc-----------------------------------------------------------
Confidence 776666666666654431 11
Q ss_pred eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 489 (764)
.+..........+.+-.+|.|+.-++-...+.+..||..... -.++.. .+.+..-.++.++..++.-
T Consensus 224 ------v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypL------Pgs~arpys~rVD~~grVW 290 (353)
T COG4257 224 ------VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPL------PGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred ------eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeC------CCCCCCcceeeeccCCcEE
Confidence 111111222344556667777777777778889999887655 222321 2444445566676666655
Q ss_pred EEEeCCCeEEEEECCC
Q 004270 490 ISAGYHGDIKVWDFKG 505 (764)
Q Consensus 490 ~s~~~dg~v~iwd~~~ 505 (764)
.+--..|.|.-+|-.+
T Consensus 291 ~sea~agai~rfdpet 306 (353)
T COG4257 291 LSEADAGAIGRFDPET 306 (353)
T ss_pred eeccccCceeecCccc
Confidence 5444445555555443
No 455
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.79 E-value=2.9 Score=42.25 Aligned_cols=163 Identities=14% Similarity=0.065 Sum_probs=99.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeee-E-ec--C---cceE-EEEEeecCCEEEEEeCCCeEEEE-
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-W-EV--G---CSLV-KIVYHRVNGLLATVADDLVIRLF- 542 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~-~~--~---~~i~-~~~~s~~~~~la~~~~d~~i~v~- 542 (764)
.....|..+-..|||+.+..-+. ..+.++++.+...... + +. + ..++ ++..-..|..+.+++.||.|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 44566788889999998887665 6888898876543221 1 11 1 1122 12222345677888889888776
Q ss_pred EccCC-----eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEE
Q 004270 543 DVVAL-----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH 617 (764)
Q Consensus 543 d~~~~-----~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~ 617 (764)
|+..+ ..++.++-...++..+.--.+.+-+++-+..|++.++.....+.+-.-+.-..+.-+++||.+.+|++-.
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence 44332 1223333222334433333334556677788888887765555544334444677899999999998765
Q ss_pred eCCCeEEEEecccccCCCCC
Q 004270 618 VDQNGVYLWVNRCMFSGDSN 637 (764)
Q Consensus 618 ~d~~~i~lW~~~~~~~~~~~ 637 (764)
.. .++++.++..+-.++.
T Consensus 377 ~g--ki~~~~l~Nr~Peisw 394 (733)
T COG4590 377 QG--KIRLAQLENRNPEISW 394 (733)
T ss_pred CC--ceEEEEecCCCCCccH
Confidence 44 4999988776665553
No 456
>PHA02790 Kelch-like protein; Provisional
Probab=92.68 E-value=4.4 Score=43.75 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=43.6
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC--cEEEEEecCCCCCceee
Q 004270 235 DGQPLLASGASSG-----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 235 d~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~--~i~vw~~~~~~~~~~~~ 307 (764)
++. ++++|+.++ .+..||..+++-...-.......-.+++ .-++...+.||.++ ++..|+. ....+..+
T Consensus 271 ~~~-lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp--~~n~W~~~ 346 (480)
T PHA02790 271 GEV-VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFH--GDAAWVNM 346 (480)
T ss_pred CCE-EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEEC--CCCeEEEC
Confidence 344 677777543 4677888776533222101111111222 23666667777543 4555643 33333333
Q ss_pred EeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 308 RFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
..+....... +++ .-+|+..+.||.++
T Consensus 347 ~~l~~~r~~~-~~~-~~~g~IYviGG~~~ 373 (480)
T PHA02790 347 PSLLKPRCNP-AVA-SINNVIYVIGGHSE 373 (480)
T ss_pred CCCCCCCccc-EEE-EECCEEEEecCcCC
Confidence 2222111111 111 22666667777543
No 457
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.63 E-value=13 Score=37.73 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=93.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCc------EEEEECcCC-cccceecCcccccccc--------ccCcEEEEEECCCCCEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGW------IERFNLQSG-ISRGSYLDMSERSNYA--------HNGEVVGVACDSTNTLM 489 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~------i~i~~~~~~-~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~l 489 (764)
+....+.+.+++..+++-+.+|. +..+++... .............+.. -....-+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 67888999976666666677776 666665541 1111110000000011 11145578887888888
Q ss_pred EEEeCC------CeEEEEECCCCCeeeeEe----------------cCcceEEEEEeecCCEEEEEeC-----CC--e--
Q 004270 490 ISAGYH------GDIKVWDFKGRDLKSRWE----------------VGCSLVKIVYHRVNGLLATVAD-----DL--V-- 538 (764)
Q Consensus 490 ~s~~~d------g~v~iwd~~~~~~~~~~~----------------~~~~i~~~~~s~~~~~la~~~~-----d~--~-- 538 (764)
++.-.+ ..|..++.. ++....+. ......+++++|+|+.|.++.+ |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 877777 778888866 55544431 2356789999999996666543 22 1
Q ss_pred -----EEEE--EccC-CeEEE----Eeec-----CCCCeeEEEEcCCCcEEEEE-----eCCCcEEEEEc
Q 004270 539 -----IRLF--DVVA-LRMVR----KFEG-----HTDRITDFCFSEDGKWLLSS-----GMDGSLRIWDV 586 (764)
Q Consensus 539 -----i~v~--d~~~-~~~~~----~~~~-----h~~~i~~l~~s~dg~~l~s~-----s~dg~i~iwd~ 586 (764)
++++ |..+ ++... .+.. ....|+++.+-+++++|+-- +....++|+.+
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 4554 5444 22222 2332 34678999999999987732 12345666644
No 458
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.61 E-value=1.7 Score=44.52 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=90.5
Q ss_pred ccCCCEEE-EEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC--------CEEEEEeCCCeEEEEEC
Q 004270 433 SACGNFAV-LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--------TLMISAGYHGDIKVWDF 503 (764)
Q Consensus 433 s~~g~~l~-~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------~~l~s~~~dg~v~iwd~ 503 (764)
..+.+.++ .|.....++-.|+..|+.+.... -|..- -+.+.|.. +.|+-.+..+..+|=-.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~--------~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR 545 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWD--------LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPR 545 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEee--------cCCcc--eeecCCchhHHhcCccceEEeecccceEEeccc
Confidence 33444443 34455677888888888887764 33333 45566643 34554444443333222
Q ss_pred CCCCeeeeEecCcceEEEEEe----ecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC
Q 004270 504 KGRDLKSRWEVGCSLVKIVYH----RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 504 ~~~~~~~~~~~~~~i~~~~~s----~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg 579 (764)
-.+..+...+.....+.-.|| ..+.++|+++..|.|++||.-.-+....+.+-...|..+..+.+|+++++.+. .
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred ccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence 234333333333333322233 35779999999999999997766666677888889999999999999886664 5
Q ss_pred cEEEEEcC
Q 004270 580 SLRIWDVI 587 (764)
Q Consensus 580 ~i~iwd~~ 587 (764)
++.+-|++
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 67777764
No 459
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=92.53 E-value=9.2 Score=36.43 Aligned_cols=135 Identities=12% Similarity=0.173 Sum_probs=88.0
Q ss_pred CeEEEEEEe-----CCeEEEEecCCCeEEEecCCCCcceEEEEEeCC-----eEEEEECCeEEEEecCceEEEec-----
Q 004270 26 TENFVTVSV-----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD-----YTFAAYGNHIAVVKRAHQVATWS----- 90 (764)
Q Consensus 26 ~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~-----~~~~a~g~~i~vw~~~~~~~~~~----- 90 (764)
...|+++.. +..++||.-.+...-...++.|..|.++-.... .+-+|+|..|++|+.-+....+.
T Consensus 30 d~kLvvaD~g~~~~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiYkNlkP~yKftlP~~~ 109 (257)
T PF14779_consen 30 DYKLVVADLGTGDQNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAGPSVYIYKNLKPFYKFTLPPLE 109 (257)
T ss_pred eEEEEEEecCCcCCCceEEEEcCCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeCCEEEEEecccceeeecCCCCC
Confidence 446666664 468999988877766666666776666655432 56778899999986332211100
Q ss_pred ----------------------------------------------------------------ccccceEEEEE-----
Q 004270 91 ----------------------------------------------------------------RHSAKVNLLLL----- 101 (764)
Q Consensus 91 ----------------------------------------------------------------~h~~~v~~l~~----- 101 (764)
.+...|+||+.
T Consensus 110 ~~~~E~eiW~~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~~t~ITcm~tikk~~ 189 (257)
T PF14779_consen 110 INPLEQEIWQQLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKRQTVITCMATIKKSS 189 (257)
T ss_pred CCHHHHHHHHhcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCcccCceeEEeeeecccc
Confidence 24456888874
Q ss_pred -e---CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEE---EeCCCCCCEEEEEeCCCcEEEE
Q 004270 102 -F---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI---MHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 102 -~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~l~~~~~dg~i~iw 166 (764)
+ -..|+.|.++|.|.|-|-+.... +.......-.+..++ +.... -+|++++.||.|++.
T Consensus 190 ~d~~a~scLViGTE~~~i~iLd~~af~i----l~~~~lpsvPv~i~~~G~~devd--yRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 190 ADEDAVSCLVIGTESGEIYILDPQAFTI----LKQVQLPSVPVFISVSGQYDEVD--YRIVVACRDGKIYTI 255 (257)
T ss_pred cCCCCcceEEEEecCCeEEEECchhhee----EEEEecCCCceEEEEEeeeeccc--eEEEEEeCCCEEEEE
Confidence 1 25799999999999999887766 555555443332222 22123 378999999988764
No 460
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.45 E-value=10 Score=36.05 Aligned_cols=243 Identities=12% Similarity=0.046 Sum_probs=145.3
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
...-..++-.|||. +-+++...|.|--.|..+|+....-. +....-..+..-|||..-++-+.. -|-.++..+..
T Consensus 61 G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~---aI~R~dpkt~e 135 (353)
T COG4257 61 GSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL---AIGRLDPKTLE 135 (353)
T ss_pred CCCccccccCCCCc-eEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc---eeEEecCcccc
Confidence 34567788889998 78888888889889999998766555 566667778888888766554332 23333433222
Q ss_pred ceeeEe-ccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270 304 PRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (764)
Q Consensus 304 ~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (764)
...... ...-........|.+.|++-+++.. |.---.|.
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP--------------------------------------- 175 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP--------------------------------------- 175 (353)
T ss_pred eEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCc---------------------------------------
Confidence 222111 1223346677788888877777642 11000010
Q ss_pred ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
..+.+.+|+.. .......++..|+|..-++...+..|...|..++.. ..+
T Consensus 176 ---------------a~~~i~vfpaP--------------qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~ 225 (353)
T COG4257 176 ---------------ARNVISVFPAP--------------QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVV 225 (353)
T ss_pred ---------------ccCceeeeccC--------------CCCCCcceEECCCCcEEEEeccccceEEcccccCCc-cee
Confidence 01222333322 125567789999999999988888898888887732 222
Q ss_pred cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeE
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVI 539 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i 539 (764)
..+ ......-+.+-.+|.++.-+|....+.+.-+|-.... -.++... ..-.++.....++.-.+-...+.|
T Consensus 226 p~P-----~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai 299 (353)
T COG4257 226 PQP-----NALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAI 299 (353)
T ss_pred cCC-----CcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCce
Confidence 211 1223445667778888888887777888888766544 3333332 334455555555544444445566
Q ss_pred EEEEccCC
Q 004270 540 RLFDVVAL 547 (764)
Q Consensus 540 ~v~d~~~~ 547 (764)
.-+|-++.
T Consensus 300 ~rfdpeta 307 (353)
T COG4257 300 GRFDPETA 307 (353)
T ss_pred eecCcccc
Confidence 66665543
No 461
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.38 E-value=0.67 Score=43.54 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=48.1
Q ss_pred EcCCCcEEEEEeCCCcEEEEEcCccceEEEE---------------eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 565 ~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~---------------~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
+..++.+|++.+.+|.+++||+.+++.+..- .....|..+.++.+|.-+++-+. +. .|.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~-~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GD-SYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CC-EEEeccc
Confidence 4457889999999999999999988765322 12234999999999988887664 53 8999864
No 462
>PHA02790 Kelch-like protein; Provisional
Probab=92.17 E-value=13 Score=40.24 Aligned_cols=179 Identities=7% Similarity=-0.054 Sum_probs=87.4
Q ss_pred cCCeEEEEEEeC-----CeEEEEecCCCeEEEecCCC-CcceEEEEEeCCeEEEEECC----eEEEEecCce----EEEe
Q 004270 24 LGTENFVTVSVG-----KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGN----HIAVVKRAHQ----VATW 89 (764)
Q Consensus 24 ~~~~~~~~~~~~-----~~i~iwd~~~~~~~~~~~~~-~~~I~~~~~~~~~~~~a~g~----~i~vw~~~~~----~~~~ 89 (764)
.++..+++++.+ .++..||..+++-....+.. +..-.+++...+..|+..|. .+..|+..+. +..+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 456666777653 35778999987765554322 22223444555666666553 2777875432 1112
Q ss_pred cccccceEEEEEeCCEEEEEecCC---cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 90 SRHSAKVNLLLLFGEHILSIDIDG---NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 90 ~~h~~~v~~l~~~g~~l~s~~~dg---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
............+|...+.|+.++ .+..||..+.+-.. ......... ..++..-++ +|++.+ |.+..|
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~~~m~~~r~--~~~~~~~~~---~IYv~G--G~~e~y 420 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF--GPSTYYPHY--KSCALVFGR---RLFLVG--RNAEFY 420 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe--CCCCCCccc--cceEEEECC---EEEEEC--CceEEe
Confidence 211222233345677667766543 47788876654321 111111111 122223333 455543 457889
Q ss_pred eCCCCeEE--EEEcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCC
Q 004270 167 NISTKKKL--YEFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYD 213 (764)
Q Consensus 167 d~~~~~~~--~~~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~ 213 (764)
|.++.+=. ..+......... ..-++++.++|+.+ ..+..||..++
T Consensus 421 dp~~~~W~~~~~m~~~r~~~~~--~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 421 CESSNTWTLIDDPIYPRDNPEL--IIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCCCCcEeEcCCCCCCccccEE--EEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 88765322 222211122222 22356677777654 24556665544
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.15 E-value=0.015 Score=58.35 Aligned_cols=147 Identities=14% Similarity=0.226 Sum_probs=102.4
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270 185 SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (764)
Q Consensus 185 ~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 264 (764)
....|-|.+.-+++++.+..+..||-. ++....... .+....++|..++...++.+-..+.+.+||+.+......-.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~--tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP--TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC--chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 345677777779999999999999843 444444433 56778899999888666667788999999997653322221
Q ss_pred cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i 340 (764)
+-...-.-+.|++..+.++.+...+.+.+++.... +.......|...++++++.+.+. .+.++.|..+.+
T Consensus 115 -gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 115 -GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred -cCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 22222233789999999999988999999976554 34444434999999999998774 455555554433
No 464
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=3.3 Score=41.99 Aligned_cols=100 Identities=12% Similarity=0.270 Sum_probs=70.5
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe----cC-cceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE----VG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
...++|.++.|++|++.++.--.|..|.++++...+...... .. ..|...+|+.. .-+|...+.| +.+|....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 456799999999999999999999999999985444333222 22 45888888875 5555555443 55554432
Q ss_pred -CeEEEEeecCCCCeeEEEEcCCCcEEE
Q 004270 547 -LRMVRKFEGHTDRITDFCFSEDGKWLL 573 (764)
Q Consensus 547 -~~~~~~~~~h~~~i~~l~~s~dg~~l~ 573 (764)
.+.++..+.|...|+...|.++-+.+.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEe
Confidence 334556667888899999998877544
No 465
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.91 E-value=0.033 Score=56.13 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=93.2
Q ss_pred cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE-EcCCeEEEEEccCCceEEEE
Q 004270 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-CSDGKIHVHNVRYDEELVTF 219 (764)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g-~~dg~i~iwd~~~~~~~~~~ 219 (764)
....+-|.+ .-+++++.+..+..|| +.++....... .+....++|..+++.+++. -..+.+.+|++.+... .++
T Consensus 38 i~~~w~~e~--~nlavaca~tiv~~YD-~agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 38 IIHRWRPEG--HNLAVACANTIVIYYD-KAGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred ceeeEecCC--CceehhhhhhHHHhhh-hhcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 344566777 4488888989999999 45555555544 5566678888888876654 4568999999975432 222
Q ss_pred eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCC
Q 004270 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP 281 (764)
Q Consensus 220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 281 (764)
..+....-.-+.|++.+. .++.|...|.+.|++..+.+.....- .|...++++++.+.+.
T Consensus 113 E~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY 172 (615)
T ss_pred hccCcchHHHHhhccCCc-cccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce
Confidence 211122222378888877 78888899999999987766555543 4889999999988764
No 466
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.88 E-value=0.75 Score=29.59 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=27.0
Q ss_pred CCEEEEEEeeCCC--CEEEEEeCCCcEEEEECCCc
Q 004270 225 GAVTALAFSSDGQ--PLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 225 ~~v~~l~fs~d~~--~~l~sg~~dg~i~iwd~~~~ 257 (764)
+.|.++.|+|+.. .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997543 58888888899999999853
No 467
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.82 E-value=23 Score=38.85 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=84.3
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee--eEecCcc--eEEEEEee------cCCEEEEEeC-C---Ce
Q 004270 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCS--LVKIVYHR------VNGLLATVAD-D---LV 538 (764)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~--i~~~~~s~------~~~~la~~~~-d---~~ 538 (764)
-...|.++.+.++++.++..-.+|.|.+||+..+.... .+..... +.--.|-+ ...++.+.+. + -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 36788999999999999999999999999994332221 1211111 11002222 1234444443 2 25
Q ss_pred EEEEEc-cCCeEEEEee---cCCCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc-------eEEEEE
Q 004270 539 IRLFDV-VALRMVRKFE---GHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-------ITALSL 606 (764)
Q Consensus 539 i~v~d~-~~~~~~~~~~---~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------v~~l~~ 606 (764)
.+++.+ .....+.++. -+.....+..|.- +|+...- .+++|.+|++++-+...++..+.- +.++.-
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 677777 1122222332 1222223333332 5654433 678999999999988888776522 223322
Q ss_pred cCCCCeEEEEEeCCCeEEEEecc
Q 004270 607 SPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 607 sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
|..+.+..+..+ .|++.++.
T Consensus 286 -~s~nRvLLs~~n--kIyLld~~ 305 (670)
T PF10395_consen 286 -PSPNRVLLSVNN--KIYLLDLK 305 (670)
T ss_pred -CCCCeEEEEcCC--EEEEEeeh
Confidence 334444444433 49999974
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.61 E-value=9.4 Score=40.48 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=66.9
Q ss_pred EEEEEeCC--eEEEEECCeEEEEecC---------ceEEEe-cccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccc
Q 004270 60 RALASYRD--YTFAAYGNHIAVVKRA---------HQVATW-SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL 127 (764)
Q Consensus 60 ~~~~~~~~--~~~~a~g~~i~vw~~~---------~~~~~~-~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~ 127 (764)
..+.+.+. .-++++++.+++|+.. .....+ .++...+.++ ++.....|.|+.|+--+.....
T Consensus 29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v------~lv~p~~G~v~f~~~I~~~l~~ 102 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV------GLVKPKTGRVVFWESISHLLVL 102 (422)
T ss_dssp -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE------EEEE-TT-EEEEES-TT-TT--
T ss_pred eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE------EEEEcCCCCEEecccchhhhhc
Confidence 34444554 6778889999999952 222233 4444444444 4555678999999754433321
Q ss_pred cceeeE---------ecCCccc-cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 004270 128 APVGHV---------KLDDKFT-PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA 197 (764)
Q Consensus 128 ~~~~~~---------~~~~~~~-~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la 197 (764)
.....+ ....... ...-..|.+ ++++..+|.|.....+....++++.- .+...
T Consensus 103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~----~I~~ts~GRif~~~~~~~~g~~~l~y----------~~~~~--- 165 (422)
T PF08801_consen 103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG----FIVSTSTGRIFFLGIRDSNGKYELSY----------QQLSG--- 165 (422)
T ss_dssp EEEE------------------EEEEEEETTT----EEEEETT--EEEEEE-TTS-EEEEE-----------TT------
T ss_pred CccccccccccceeeecCCceEEECCCCceEE----EEEECCCCeEEEEeCCCCCCcEEEEE----------EcCcC---
Confidence 111111 0111111 111234444 66666667666665554333333321 11100
Q ss_pred EEEcCCeEEEEEccCCceEEE-E--eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 198 VGCSDGKIHVHNVRYDEELVT-F--THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 198 ~g~~dg~i~iwd~~~~~~~~~-~--~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
.....+...+..... + .......|.+++..+..+ ++++.+.+|.|.+|++..
T Consensus 166 ------~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 166 ------RCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --------------------------------EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred ------CccccccccCceeccccCCcccchhceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 000000000000000 0 111123488888888776 999999999999999975
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.52 E-value=0.96 Score=29.11 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCcEEEEEe-CCCcEEEEEcCccceEEEEeeCCceEEEEEc
Q 004270 567 EDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLS 607 (764)
Q Consensus 567 ~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~s 607 (764)
|++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 5777776655 5789999999999999988876656666664
No 470
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.45 E-value=0.32 Score=53.12 Aligned_cols=176 Identities=16% Similarity=0.292 Sum_probs=97.4
Q ss_pred CceEEEEEccc--eeec-ceeecCCCCCCCCeEEEEE---ccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccc
Q 004270 399 TAQAYVWRLQN--FVLG-EHILRPCPENPTAVKACTI---SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472 (764)
Q Consensus 399 ~~~~~~w~~~~--~~~~-~~~~~~~~~~~~~v~~~~~---s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 472 (764)
-+...+|++.- +.+. ...+.+.......+.-+.| -++.-++.++..+|.+++.+...... ..+ .+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~--------rs 222 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF--------RS 222 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHH--------Hh
Confidence 35667777653 2221 2222222222333344444 44667888999999999888765443 222 25
Q ss_pred ccCcEEEEE-----------ECCCCCEEEEEeCCCeEEEEECC-C----CCeeeeEecCc--ceEEEEEeecCC------
Q 004270 473 HNGEVVGVA-----------CDSTNTLMISAGYHGDIKVWDFK-G----RDLKSRWEVGC--SLVKIVYHRVNG------ 528 (764)
Q Consensus 473 h~~~v~~l~-----------~~~~~~~l~s~~~dg~v~iwd~~-~----~~~~~~~~~~~--~i~~~~~s~~~~------ 528 (764)
|...++.++ .+|||+.++.++.||.+++|-+. + ..++..++.+. +-.|..++.+..
T Consensus 223 Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~ 302 (1283)
T KOG1916|consen 223 HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIG 302 (1283)
T ss_pred cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccc
Confidence 655555443 68999999999999999998764 2 24455555553 333333333211
Q ss_pred ---EEEEEeC-CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc--------E----EEEEeCCCcEEEEEc
Q 004270 529 ---LLATVAD-DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK--------W----LLSSGMDGSLRIWDV 586 (764)
Q Consensus 529 ---~la~~~~-d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~--------~----l~s~s~dg~i~iwd~ 586 (764)
+++++++ +..+++|....++++-. -....|..+. -+||. | +++-+-|++|.+|.=
T Consensus 303 ~w~~~Itttd~nre~k~w~~a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 303 KWVLRITTTDVNREEKFWAEAPWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred eeEEEEecccCCcceeEeeccchhhhhh--hcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 3344433 55788888777766511 1122233333 22222 2 344566888888853
No 471
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.30 E-value=17 Score=36.32 Aligned_cols=148 Identities=9% Similarity=0.062 Sum_probs=74.7
Q ss_pred CCEEEEEEcCCeEEEEEccCC-ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee------------
Q 004270 193 LDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------------ 259 (764)
Q Consensus 193 ~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~------------ 259 (764)
+++|+.|+.+|...+. +... .....+.. ..+|+++...+.-+.+++.++....++.+++..-..
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~~--~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLIG--RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEecC--cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 3689999999855544 5432 22222222 568999999988773444555555699999843221
Q ss_pred --eeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEec----cCCCCCCeeEEEecC--CCEEE
Q 004270 260 --QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYAN--GRHIL 330 (764)
Q Consensus 260 --~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~--~~~l~ 330 (764)
......+|.............. .++++....+|.++.+...-......+.. ..-..++..+..+++ ...+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 0011224444444444443222 34445556677776544332121222210 011223333333332 45667
Q ss_pred EEeCCCcEEEEEe
Q 004270 331 SAGQDRAFRLFSV 343 (764)
Q Consensus 331 s~~~dg~i~i~d~ 343 (764)
.|+..+...++++
T Consensus 170 vG~~~~~~~~~~~ 182 (302)
T smart00036 170 IGSDKGGGDVVQF 182 (302)
T ss_pred EEEcCCCCeEEEE
Confidence 7765433555555
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.28 E-value=32 Score=39.39 Aligned_cols=86 Identities=9% Similarity=0.165 Sum_probs=57.5
Q ss_pred eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee---cCCCCeeEEEEcCCC------cEEEEEeCCCcE
Q 004270 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDG------KWLLSSGMDGSL 581 (764)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~s~dg------~~l~s~s~dg~i 581 (764)
++..+..+.-+.-.-+...++++..+|.+.-+.......+..+. .-...|.++++.++. ++++.++.|+++
T Consensus 533 ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 533 EWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred cccCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccce
Confidence 44444444444444446677777778877777654333333332 234668899998865 689999999999
Q ss_pred EEEEcCccceEEEEe
Q 004270 582 RIWDVILARQIDAIH 596 (764)
Q Consensus 582 ~iwd~~~~~~~~~~~ 596 (764)
++..+.....+..+.
T Consensus 613 riisL~p~d~l~~ls 627 (1205)
T KOG1898|consen 613 RIISLDPSDCLQPLS 627 (1205)
T ss_pred eEEEecCcceEEEcc
Confidence 999998766666654
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.13 E-value=12 Score=34.36 Aligned_cols=143 Identities=15% Similarity=0.232 Sum_probs=85.0
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECC--CCCeeeeEecCcceEEEEEeecCCEEEEEeCC---C---eEEEE---Ecc--
Q 004270 479 GVACDSTNTLMISAGYHGDIKVWDFK--GRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---L---VIRLF---DVV-- 545 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~---~i~v~---d~~-- 545 (764)
.++..+. +.|..+...+.|.+|++. ..+.+..+..-+.|..+.++..|++|++--.+ . .+|+| ...
T Consensus 22 ~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3444432 344444566789999988 44566677777999999999999999986432 2 56665 221
Q ss_pred CCeEEE-EeecC---------------------CCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCccce-E---EEEee-
Q 004270 546 ALRMVR-KFEGH---------------------TDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQ-I---DAIHV- 597 (764)
Q Consensus 546 ~~~~~~-~~~~h---------------------~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~-~---~~~~~- 597 (764)
...+++ ++-|| ..++.+++..| .|+.|+ |+ ++.+.+|.+..+.. . ..+..
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEech
Confidence 112222 22232 22456677766 455444 44 56799998875433 1 11111
Q ss_pred ------CCc--eEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 598 ------DVS--ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 598 ------~~~--v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
+.. +..+++. +.|+|..+... +++..+
T Consensus 179 ~~l~~~~~~~~p~~v~ic--~~yiA~~s~~e--v~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAIC--EGYIAVMSDLE--VLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEEE--eeEEEEecCCE--EEEEEE
Confidence 222 5566664 56888887665 666544
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.90 E-value=8.7 Score=32.22 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=74.9
Q ss_pred EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-----CCCEEEEEeCCCeEEEEECCC
Q 004270 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKG 505 (764)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~ 505 (764)
.|......|++++..|.|.+++........... ........-...|++++-.+ ....|+.|+ ...+..||...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~-~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQ-DSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccc-cCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 344445578888999999999876543322110 00001114556788886544 235566555 46889999998
Q ss_pred CCeeeeEecCcceEEEEEeec---CCEEEEEeCCCeEEEEEccCCeEEEEe
Q 004270 506 RDLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMVRKF 553 (764)
Q Consensus 506 ~~~~~~~~~~~~i~~~~~s~~---~~~la~~~~d~~i~v~d~~~~~~~~~~ 553 (764)
..-+...+.+..+.++.+-.- ..-++..+.+..|.-||.+..+...+.
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 877777777788888877542 234555555677777777665554443
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=6.5 Score=40.75 Aligned_cols=30 Identities=17% Similarity=0.001 Sum_probs=24.5
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIERFN 452 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~ 452 (764)
-.-.|..+..++.|..++..+.+|.+.++=
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 345778899999999999999999776654
No 476
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.59 E-value=2.7 Score=39.50 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=52.9
Q ss_pred eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEe-------e-------cCCCCeeEEEEcCCCcEEEEEe
Q 004270 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-------E-------GHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~-------~-------~h~~~i~~l~~s~dg~~l~s~s 576 (764)
.+..+.++.. +..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+
T Consensus 8 ~i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 8 PIVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred cEecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 3344444444 4456889999999999999999998775432 1 2445677888888887766654
Q ss_pred CCCcEEEEEcCcc
Q 004270 577 MDGSLRIWDVILA 589 (764)
Q Consensus 577 ~dg~i~iwd~~~~ 589 (764)
+|..+.|+..-+
T Consensus 86 -ng~~y~y~~~L~ 97 (219)
T PF07569_consen 86 -NGDSYSYSPDLG 97 (219)
T ss_pred -CCCEEEeccccc
Confidence 567788876543
No 477
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.57 E-value=22 Score=36.32 Aligned_cols=122 Identities=19% Similarity=0.305 Sum_probs=79.7
Q ss_pred CcEEEEEE--CC-CCC-EEEEEeCCCeEEEEECC---CC----CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270 475 GEVVGVAC--DS-TNT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 475 ~~v~~l~~--~~-~~~-~l~s~~~dg~v~iwd~~---~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d 543 (764)
..+.++|+ ++ +|. +++..+.+|.+..|.+. .+ ++++.+.....+..+........|.++-++.-|.-|+
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~ 235 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYD 235 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEe
Confidence 34677776 33 344 56667788998888774 23 4678888889999999999999999999999999998
Q ss_pred ccC-----CeEEEEeec--CCCCeeEEEEc--CCC-cEEEEEe-CCCcEEEEEcCc-cceEEEEe
Q 004270 544 VVA-----LRMVRKFEG--HTDRITDFCFS--EDG-KWLLSSG-MDGSLRIWDVIL-ARQIDAIH 596 (764)
Q Consensus 544 ~~~-----~~~~~~~~~--h~~~i~~l~~s--~dg-~~l~s~s-~dg~i~iwd~~~-~~~~~~~~ 596 (764)
.+- ++.+....+ ....|-.|++- ++| .||+.++ .+++..||+... ...+..|+
T Consensus 236 Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 236 AEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp SSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred cCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 762 233433333 34567777764 344 3555444 678899999875 35555554
No 478
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.26 E-value=38 Score=40.07 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 004270 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRY 212 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~ 212 (764)
......++|+|.-.++|.|+.+|.|.++....
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 44567889999999999999999999997553
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.08 E-value=11 Score=38.47 Aligned_cols=238 Identities=15% Similarity=0.172 Sum_probs=115.3
Q ss_pred EEEEeCCEEEEEecCCcEEEEEccCCccc-ccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe----
Q 004270 98 LLLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---- 172 (764)
Q Consensus 98 ~l~~~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~---- 172 (764)
.+...|+.-+-.+.||.=..|.+.+-... -.++++....... ..-+-.|.+. ..++.|..+|.+.+....-..
T Consensus 75 gm~~~G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal~~pp-v~wa~~~~gq-p~~alglsngqv~v~qp~~s~t~p~ 152 (733)
T COG4590 75 GMGAYGENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQALGFPP-VLWAQTPPGQ-PWFALGLSNGQVAVVQPQLSHTMPT 152 (733)
T ss_pred ecccccceeEEEecCCccEEEEecccCCCCCCchhhhhcCCCC-cccccCCCCC-ceEEEeccCCeEEEEeccccccCCC
Confidence 33445666666677888788887654321 1112222211111 1122233343 578889999999888642110
Q ss_pred EEEEEcCCCCCeEEEEEcCCCC--------EEEEEEcCCeEEEEEccC-----------Cc-eEEEEeccCCCCEEEEEE
Q 004270 173 KLYEFKGWGSSISSCVSSPALD--------VVAVGCSDGKIHVHNVRY-----------DE-ELVTFTHSMRGAVTALAF 232 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~--------~la~g~~dg~i~iwd~~~-----------~~-~~~~~~~~~~~~v~~l~f 232 (764)
+-..|.. .-.-++..+.|+ +...++.+....+++... .+ .+..+... ...|..+-.
T Consensus 153 pg~~Fp~---g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~-~~~v~qllL 228 (733)
T COG4590 153 PGREFPP---GLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVP-FSDVSQLLL 228 (733)
T ss_pred CCccCCC---CCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCC-ccchHhhEE
Confidence 1111111 111123333332 222333333333443321 12 22223222 467888889
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCceeeee--eecccc---cCee-EEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270 233 SSDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHD---NAII-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (764)
Q Consensus 233 s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~h~---~~v~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 306 (764)
.|||+ .+..-+. ..+.++++.+...... ...... ..|+ ++.....|.-++.++.||-|.-|---..++.+..
T Consensus 229 ~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 229 TPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred CCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 99999 6655443 6788888876543222 111111 1222 2333446677888999999999843222222222
Q ss_pred e--EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 307 L--RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 307 ~--~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
. +.++-...++..+.-..+.+-+++-+..|++..+..
T Consensus 307 ~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~s 345 (733)
T COG4590 307 NHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYS 345 (733)
T ss_pred eeeeccccCcccceeeccccccceEEEEcCCCceeeeec
Confidence 2 222222233333332224455667777777776654
No 480
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.87 E-value=27 Score=38.54 Aligned_cols=93 Identities=11% Similarity=0.142 Sum_probs=51.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCe-----EEEEECC---CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 475 GEVVGVACDSTNTLMISAGYHGD-----IKVWDFK---GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~-----v~iwd~~---~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
+.-..+.|-|.|..+++-+.||. |.++.-+ .|+.-............+|.-....+|++ ....+.+|-...
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence 33345789999999999886653 6666533 22222222333445556666555555544 345788887655
Q ss_pred CeEEEEeecCCCCeeEEEEcCC
Q 004270 547 LRMVRKFEGHTDRITDFCFSED 568 (764)
Q Consensus 547 ~~~~~~~~~h~~~i~~l~~s~d 568 (764)
-.--.+..-.-..+.-+.|+|.
T Consensus 326 yhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred eEEEEEEeecCCCcceeeeccc
Confidence 4322222222233455666663
No 481
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.25 E-value=18 Score=40.82 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=22.5
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIER 450 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i 450 (764)
....|..+.++|+|++++..+..|...+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 3468999999999999999888764444
No 482
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.53 E-value=52 Score=37.81 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=54.9
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee----cCcccc-c------cccccCcEEEEEECCCCCEEEEE
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSER-S------NYAHNGEVVGVACDSTNTLMISA 492 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~----~~~~~~-~------~~~h~~~v~~l~~~~~~~~l~s~ 492 (764)
...|.+++...-+.+++....||+|.++|..+.+..... ...... . ...+...+..++|||.+-.++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 367888998889999999999999999999887665544 111100 0 01122245568899999999999
Q ss_pred eCCCeEE
Q 004270 493 GYHGDIK 499 (764)
Q Consensus 493 ~~dg~v~ 499 (764)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888866
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.41 E-value=10 Score=41.05 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=56.9
Q ss_pred ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcE
Q 004270 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 581 (764)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i 581 (764)
|+-.|+....+.+.+.+--+.++..+..|..-...-.++++|+.+.+....+ +-.+-+.|-|-...++.-+.|. +
T Consensus 324 dli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dn-l 398 (1636)
T KOG3616|consen 324 DLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDN-L 398 (1636)
T ss_pred ecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCc-e
Confidence 4444555555555566666666666666666666667778887754321111 1234578888887777666555 6
Q ss_pred EEE-EcCccceEEEEeeCCceEE
Q 004270 582 RIW-DVILARQIDAIHVDVSITA 603 (764)
Q Consensus 582 ~iw-d~~~~~~~~~~~~~~~v~~ 603 (764)
.|| ++.-.+.+..++....|..
T Consensus 399 ~iwyn~d~peqvt~~kikgdv~~ 421 (1636)
T KOG3616|consen 399 CIWYNIDAPEQVTMFKIKGDVEA 421 (1636)
T ss_pred EEEecCCcchhheeeEecccchh
Confidence 666 5555566666655444433
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.58 E-value=25 Score=33.55 Aligned_cols=145 Identities=15% Similarity=0.160 Sum_probs=77.6
Q ss_pred EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-C--CcEEEEECCCc-eeeeeee----cccccCeeEEEE
Q 004270 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEKR-RLQSVIR----EAHDNAIISLHF 276 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-d--g~i~iwd~~~~-~~~~~~~----~~h~~~v~~l~~ 276 (764)
-.+||+.+++... +.....-...+-+|.+||+ +|.+|+. + ..+++++..+. ....... ......=-+..-
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 4689998876533 3333244555567889999 8888874 2 35788876541 0000000 012223334556
Q ss_pred ecCCCEEEEEcCCCc-EEEEEecCCCCCceeeEeccC-----CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 277 FANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSG-----HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 277 ~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
.|||+.|+.|+..+- ..+|.-.........+..+.. ...---.+...|+|+.++.+..+. .+||..+.+..+
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence 789999999887643 334422111111111111111 111122455678999998887654 567877765544
Q ss_pred ccc
Q 004270 351 ELS 353 (764)
Q Consensus 351 ~~~ 353 (764)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 443
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.37 E-value=42 Score=35.44 Aligned_cols=71 Identities=21% Similarity=0.164 Sum_probs=45.1
Q ss_pred CCEEEEEeCCCeEEEEEccCCe--E----EEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270 527 NGLLATVADDLVIRLFDVVALR--M----VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDV 599 (764)
Q Consensus 527 ~~~la~~~~d~~i~v~d~~~~~--~----~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 599 (764)
+.+|+.+-..+.|....++..+ . ...+.. .++|.++..+||| .+.+..+.+|.+.= +++....++..+.
T Consensus 369 g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~---~~~~~~~~~~~~~ 444 (454)
T TIGR03606 369 NSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQK---DDGSVTNTLENPG 444 (454)
T ss_pred CCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcccc---CCCCceeEecCCC
Confidence 6788888888888888886442 2 223443 6799999999997 55555556665432 3344444444444
Q ss_pred ce
Q 004270 600 SI 601 (764)
Q Consensus 600 ~v 601 (764)
.|
T Consensus 445 ~~ 446 (454)
T TIGR03606 445 SI 446 (454)
T ss_pred eE
Confidence 33
No 486
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.24 E-value=34 Score=34.20 Aligned_cols=227 Identities=9% Similarity=0.015 Sum_probs=114.5
Q ss_pred eEEEEEEeCCeEEEEecCC--CeEEEecCCCCcceEEEEEeCC--eEEEEECCe--EEEEecCceE--------------
Q 004270 27 ENFVTVSVGKAFHIYNCAK--LNLVLVGPQLPKKIRALASYRD--YTFAAYGNH--IAVVKRAHQV-------------- 86 (764)
Q Consensus 27 ~~~~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~I~~~~~~~~--~~~~a~g~~--i~vw~~~~~~-------------- 86 (764)
++++.++.+|-+.++ ... .+..... ...+|++|.+.+. ..++.+|.. +++++.....
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 578888887777666 554 4455554 4679999998877 334455766 9999852111
Q ss_pred ---EEecccccceEEEEE-eCC--EEEEEecCCcEEEEEccCCcccccceeeE---e-cCCccccEEEEeCCCCCCEEEE
Q 004270 87 ---ATWSRHSAKVNLLLL-FGE--HILSIDIDGNMFIWAFKGIEENLAPVGHV---K-LDDKFTPTCIMHPDTYLNKVIV 156 (764)
Q Consensus 87 ---~~~~~h~~~v~~l~~-~g~--~l~s~~~dg~v~vWd~~~~~~~~~~~~~~---~-~~~~~~~~~~~~p~~~~~~l~~ 156 (764)
...-+|......+.. .++ .++.+....+|.++............+.+ . ........+..+++.....+.+
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 112234433333333 333 22333445667775543331111112211 1 1122222333444432367888
Q ss_pred EeCCCcEEEEeCCC--CeEEE-----EEcCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC-ceEEEEeccCCCCE
Q 004270 157 GSQEGSLQLWNIST--KKKLY-----EFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAV 227 (764)
Q Consensus 157 ~~~dg~i~iwd~~~--~~~~~-----~~~~h~-~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~v 227 (764)
|+..+...++++.. ...-. ...... .++..... +++.+|++ .. ......|.. | +........-.+..
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~~-~~~v~Vn~~-G~~~~r~~~l~w~~~p 246 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-YD-EFGVFVNLY-GKRRSRNPILHWEFMP 246 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-EC-cEEEEEeCC-CCccccceEEEcCCcc
Confidence 88763355665533 11000 011111 34444343 44445444 33 345555554 4 22222111124566
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 264 (764)
.++++.. . +++.-. +..|.++++.+++.++.+.
T Consensus 247 ~~~~~~~--p-yll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 247 ESFAYHS--P-YLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cEEEEEC--C-EEEEEc-CCcEEEEECCCCceEEEEe
Confidence 7788774 4 444444 5569999999999888886
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.15 E-value=17 Score=30.58 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=72.3
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCC--------CCeeeeEecCcceEEEEEee-----cCCEEEEEeCCCeEEEEEccCC
Q 004270 481 ACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVYHR-----VNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 481 ~~~~~~~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~i~~~~~s~-----~~~~la~~~~d~~i~v~d~~~~ 547 (764)
.|+.....|+.++.-|+|.|++... ...+..+.....|++++-.+ +...|++|+ ...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 4555666788888889999998663 34566777788888887766 244666665 457999999877
Q ss_pred eEEEEeecCCCCeeEEEEcC---CCcEEEEEeCCCcEEEEEcCccceEEE
Q 004270 548 RMVRKFEGHTDRITDFCFSE---DGKWLLSSGMDGSLRIWDVILARQIDA 594 (764)
Q Consensus 548 ~~~~~~~~h~~~i~~l~~s~---dg~~l~s~s~dg~i~iwd~~~~~~~~~ 594 (764)
.-+.--. -.+.|+++.+-. ...-|+..+.+..|.-+|..-.+...+
T Consensus 84 ~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 5543333 235677776632 122344445577788888664444433
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.10 E-value=39 Score=34.68 Aligned_cols=41 Identities=5% Similarity=0.035 Sum_probs=19.7
Q ss_pred CcEEEEECCCceeeeeeeccccc-CeeEEEEecCCCEEEEEcC
Q 004270 247 GVISIWNLEKRRLQSVIREAHDN-AIISLHFFANEPVLMSASA 288 (764)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~ 288 (764)
..+.+||..+.+-...-...... .-.+++ .-++++.+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence 46888998776433221101111 112222 336667777765
No 489
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.77 E-value=35 Score=33.80 Aligned_cols=167 Identities=10% Similarity=0.094 Sum_probs=92.9
Q ss_pred cEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-----CEE-EEEeCCCeEEEEECCCCCeeeeEec------
Q 004270 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-----TLM-ISAGYHGDIKVWDFKGRDLKSRWEV------ 514 (764)
Q Consensus 447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~l-~s~~~dg~v~iwd~~~~~~~~~~~~------ 514 (764)
.|..||+.+++.+..+.-+.... ...+....+.++... .++ ++=+..+-|.|+|+.+++..+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 68889999998877775433221 245678888887732 233 3333446899999998865544432
Q ss_pred --------------CcceEEEEEee---cCCEEEEEeCCCeEEEEEccCC--------------eEEEEeecCCCCeeEE
Q 004270 515 --------------GCSLVKIVYHR---VNGLLATVADDLVIRLFDVVAL--------------RMVRKFEGHTDRITDF 563 (764)
Q Consensus 515 --------------~~~i~~~~~s~---~~~~la~~~~d~~i~v~d~~~~--------------~~~~~~~~h~~~i~~l 563 (764)
...+..++.+| +++.|....-.+ -++|.+.+. +.+..+-........+
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence 23355555554 555555544322 122222211 1122221112356778
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcCcc---ceEEEEe-eCC---ceEEEEEcC--CCCeEEEE
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWDVILA---RQIDAIH-VDV---SITALSLSP--NMDVLATA 616 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd~~~~---~~~~~~~-~~~---~v~~l~~sp--~g~~lat~ 616 (764)
+++++|.+.++--..+.|..|+..+. +....+. -+. -+.++.+.+ +|.+-+.+
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99999998888889999999998751 1223332 222 278888888 66655554
No 490
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.41 E-value=3.1 Score=45.97 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=45.1
Q ss_pred ecCCEEEEEeCCCeEEEEEccC----CeEEEEe-----------ec-----------CCCCeeEEEEcC----CCcEEEE
Q 004270 525 RVNGLLATVADDLVIRLFDVVA----LRMVRKF-----------EG-----------HTDRITDFCFSE----DGKWLLS 574 (764)
Q Consensus 525 ~~~~~la~~~~d~~i~v~d~~~----~~~~~~~-----------~~-----------h~~~i~~l~~s~----dg~~l~s 574 (764)
++...++++..||.+....... +...... .+ ..+...+++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3567778888888887777654 2121111 00 123455666766 7789999
Q ss_pred EeCCCcEEEEEcCccceEEEEe
Q 004270 575 SGMDGSLRIWDVILARQIDAIH 596 (764)
Q Consensus 575 ~s~dg~i~iwd~~~~~~~~~~~ 596 (764)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.37 E-value=40 Score=34.14 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=35.4
Q ss_pred CCCEEEEEEc-----CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC----cEEEEECCCcee
Q 004270 192 ALDVVAVGCS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG----VISIWNLEKRRL 259 (764)
Q Consensus 192 ~~~~la~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg----~i~iwd~~~~~~ 259 (764)
++++.+.|+. ...+..||+.+.+-...-...........+..-+++ +.+.|+.++ .+.+||.++.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCee
Confidence 4566666664 246888888766532211111111122223334566 777777653 356888887653
No 492
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.17 E-value=27 Score=42.18 Aligned_cols=153 Identities=10% Similarity=0.147 Sum_probs=87.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (764)
Q Consensus 179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~ 258 (764)
.|...++.+.-+++|..+=. .|+.++.||.....-.. .......+++.+.-.-||+ +.+ .++. .+-|+..+.
T Consensus 360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qgdG~-lYA---k~~~-~l~nLSs~~ 431 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQGDGK-LYA---KDDD-TLVNLSSGQ 431 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccCCCc-eEe---cCCC-ceeecCCCC
Confidence 45566677777777776654 46777777766442110 1122234556666666666 333 2221 133444433
Q ss_pred eeeeeecccccCeeEEEEecCCCE-EEEEcCCCcEEEEEecCCCCCcee----eEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270 259 LQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPRL----LRFRSGHSAPPLCIRFYANGRHILSAG 333 (764)
Q Consensus 259 ~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (764)
.... .-..+.+...++++.. ++++-....+.+|++....+..+. ...+.+-.....+|.++++ .|+.+.
T Consensus 432 ~~~~----~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvAD 505 (1774)
T PF11725_consen 432 MSEA----EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVAD 505 (1774)
T ss_pred cchh----hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEe
Confidence 2111 1235677778888886 555555566799998876544332 2222333346677778766 688888
Q ss_pred CCCcEEEEEeec
Q 004270 334 QDRAFRLFSVIQ 345 (764)
Q Consensus 334 ~dg~i~i~d~~~ 345 (764)
.+|.++.=++..
T Consensus 506 seGkLYsa~l~~ 517 (1774)
T PF11725_consen 506 SEGKLYSADLPA 517 (1774)
T ss_pred CCCCEEeccccc
Confidence 888877766543
No 493
>PLN02193 nitrile-specifier protein
Probab=85.85 E-value=55 Score=35.26 Aligned_cols=183 Identities=8% Similarity=-0.029 Sum_probs=0.0
Q ss_pred ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECcCCcccceecCcccccccc--
Q 004270 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYA-- 472 (764)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~-- 472 (764)
..+..||..+.....................+..-+++..+.|+.+ ..+..||+.+.+-..... .
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~--------~~~ 264 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP--------VEE 264 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCc--------CCC
Q ss_pred -ccCcEEEEEECCCCCEEEEEeCCCe-----EEEEECCCCCeeeeEecC----cceEEEEEeecCCEEEEEeCC----Ce
Q 004270 473 -HNGEVVGVACDSTNTLMISAGYHGD-----IKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADD----LV 538 (764)
Q Consensus 473 -h~~~v~~l~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~la~~~~d----~~ 538 (764)
....-...+..-++++++.|+.++. +..||+.+.+-...-... ......+..-++++++.++.+ ..
T Consensus 265 ~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~d 344 (470)
T PLN02193 265 GPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDD 344 (470)
T ss_pred CCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCc
Q ss_pred EEEEEccCCeEEEEeec---CCCCeeEEEEcCCCcEEEEEeCCC--------------cEEEEEcCccc
Q 004270 539 IRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDG--------------SLRIWDVILAR 590 (764)
Q Consensus 539 i~v~d~~~~~~~~~~~~---h~~~i~~l~~s~dg~~l~s~s~dg--------------~i~iwd~~~~~ 590 (764)
+.+||..+.+-...-.. ...+...-+..-++++++.|+.+. .+.++|+.+.+
T Consensus 345 v~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 345 VHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred eEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=85.76 E-value=7.3 Score=30.25 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270 577 MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 577 ~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
.+|.+.-||..+++.--.+..=.-.+.+++++|+++|+.+-...
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 46788899998887655555444578999999999988876544
No 495
>PLN02153 epithiospecifier protein
Probab=85.63 E-value=45 Score=34.08 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred EEEEEeCCEEEEEecCC-------cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEE
Q 004270 97 NLLLLFGEHILSIDIDG-------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQ 164 (764)
Q Consensus 97 ~~l~~~g~~l~s~~~dg-------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~ 164 (764)
..+..++...+.|+.+. .+.++|..+.+-...+..............+..-++ ..++.|+.+ ..+.
T Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~v~ 104 (341)
T PLN02153 27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT--KLYIFGGRDEKREFSDFY 104 (341)
T ss_pred eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC--EEEEECCCCCCCccCcEE
Q ss_pred EEeCCCCeEEEEEcC-----CCCCeEEEEEcCCCCEEEEEEcC-----------CeEEEEEccCCc--eEEEEeccCCCC
Q 004270 165 LWNISTKKKLYEFKG-----WGSSISSCVSSPALDVVAVGCSD-----------GKIHVHNVRYDE--ELVTFTHSMRGA 226 (764)
Q Consensus 165 iwd~~~~~~~~~~~~-----h~~~i~~~~~sp~~~~la~g~~d-----------g~i~iwd~~~~~--~~~~~~~~~~~~ 226 (764)
+||..+.+=...-.- ........+..-++++.+.|+.+ ..+.+||.++.+ .+..........
T Consensus 105 ~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r 184 (341)
T PLN02153 105 SYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR 184 (341)
T ss_pred EEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC
Q ss_pred EEEEEEeeCCCCEEEEEeCC-------------CcEEEEECCCceeeeeeecc--cccCeeEEEEecCCCEEEEEcC---
Q 004270 227 VTALAFSSDGQPLLASGASS-------------GVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSASA--- 288 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~d-------------g~i~iwd~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~--- 288 (764)
-......-+++ +++.|+.+ ..+.+||+.+.+-...-..+ ........+..-++.+++.|+.
T Consensus 185 ~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~ 263 (341)
T PLN02153 185 GGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWP 263 (341)
T ss_pred CcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCC
Q ss_pred -------CCcE--EEEEecCCCCCceeeE-----eccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 289 -------DNSI--KMWIFDTTDGDPRLLR-----FRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 289 -------d~~i--~vw~~~~~~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
.+.. .+|.++.....+..+. .+........++....+++.++.||.++.
T Consensus 264 ~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 264 DLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC
No 496
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.37 E-value=45 Score=33.79 Aligned_cols=107 Identities=7% Similarity=0.042 Sum_probs=54.0
Q ss_pred CCCEEEEEecC-----CcEEEEECcCCccc---ceecCccccccccccCcEEEEEECCCCCEEEEEeC-----CCeEEEE
Q 004270 435 CGNFAVLGTAG-----GWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVW 501 (764)
Q Consensus 435 ~g~~l~~g~~~-----g~i~i~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~v~iw 501 (764)
++..+++|+.+ ..+..||+.+.... ...... + .... .. +++. -++++.+.|+. ...+..|
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l-p---~~~~-~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~y 144 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL-P---FTFE-NG-SACY-KDGTLYVGGGNRNGKPSNKSYLF 144 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC-C---cCcc-Cc-eEEE-ECCEEEEEeCcCCCccCceEEEE
Confidence 56677777654 35677777665431 111110 0 0111 11 1122 24566666664 2357788
Q ss_pred ECCCCCeeeeE--ecCcceEEEEEeecCCEEEEEeCCC----eEEEEEccCCe
Q 004270 502 DFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDL----VIRLFDVVALR 548 (764)
Q Consensus 502 d~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~d~----~i~v~d~~~~~ 548 (764)
|..+.+-...- .........+..-++++.+.|+.++ .+.+||..+.+
T Consensus 145 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 145 NLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred cCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 88766433221 1112222333445677788887653 35688887654
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.06 E-value=3.9 Score=25.73 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=0.0
Q ss_pred EEEeecCCCCeeEEEEcCCCcEEE-EEeCC--CcEEEE
Q 004270 550 VRKFEGHTDRITDFCFSEDGKWLL-SSGMD--GSLRIW 584 (764)
Q Consensus 550 ~~~~~~h~~~i~~l~~s~dg~~l~-s~s~d--g~i~iw 584 (764)
++.+......-...+|||||++|+ ++..+ |.-.||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 498
>PRK13614 lipoprotein LpqB; Provisional
Probab=84.53 E-value=66 Score=35.26 Aligned_cols=140 Identities=9% Similarity=0.051 Sum_probs=79.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC--eEEEEEcc-CCeE---
Q 004270 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL--VIRLFDVV-ALRM--- 549 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~--~i~v~d~~-~~~~--- 549 (764)
.+.+++.++++..++....|+. .+|-...+.....+-....++.-.|.+++ .+-+..++. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~ 421 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQA 421 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccccc
Confidence 6788999999999888877662 33433323333333334456677777776 444443333 43333321 1111
Q ss_pred ---EEEeecCCC-CeeEEEEcCCCcEEEE-EeCCCc--EEEEEc---CccceEEE-----EeeCCceEEEEEcCCCCeEE
Q 004270 550 ---VRKFEGHTD-RITDFCFSEDGKWLLS-SGMDGS--LRIWDV---ILARQIDA-----IHVDVSITALSLSPNMDVLA 614 (764)
Q Consensus 550 ---~~~~~~h~~-~i~~l~~s~dg~~l~s-~s~dg~--i~iwd~---~~~~~~~~-----~~~~~~v~~l~~sp~g~~la 614 (764)
........+ .|+.+..|+||-.++. ...||. |.|=-+ ..|.+... +.....+.+++|..++.+++
T Consensus 422 ~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V 501 (573)
T PRK13614 422 PTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVV 501 (573)
T ss_pred cceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEE
Confidence 111222334 4999999999976664 334554 666443 34542221 11124689999999998877
Q ss_pred EEE
Q 004270 615 TAH 617 (764)
Q Consensus 615 t~~ 617 (764)
.+.
T Consensus 502 ~~~ 504 (573)
T PRK13614 502 TKA 504 (573)
T ss_pred Eec
Confidence 764
No 499
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.52 E-value=96 Score=36.87 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=45.2
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~ 549 (764)
-+...+.+..+......+ .+...+.+-+|+.........+.....-. ++++..++++..||.+..||...++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCCce
Confidence 344555555555444433 33444667777655544444333322111 78899999999999999999988765
No 500
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.43 E-value=52 Score=33.73 Aligned_cols=13 Identities=0% Similarity=-0.067 Sum_probs=8.8
Q ss_pred CcEEEEECcCCcc
Q 004270 446 GWIERFNLQSGIS 458 (764)
Q Consensus 446 g~i~i~~~~~~~~ 458 (764)
..+.+||..+..-
T Consensus 168 ~~v~~YDp~t~~W 180 (346)
T TIGR03547 168 KNVLSYDPSTNQW 180 (346)
T ss_pred ceEEEEECCCCce
Confidence 4678888876543
Done!