Query 004270
Match_columns 764
No_of_seqs 1200 out of 4478
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 19:48:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 2.5E-66 8.4E-71 577.9 74.8 562 5-627 8-577 (577)
2 1nr0_A Actin interacting prote 100.0 3E-66 1E-70 577.4 67.8 562 15-629 18-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 6.2E-61 2.1E-65 534.3 72.7 521 50-629 10-538 (577)
4 1nr0_A Actin interacting prote 100.0 1.1E-61 3.8E-66 540.6 61.2 514 23-587 68-610 (611)
5 1pgu_A Actin interacting prote 100.0 1.3E-59 4.4E-64 528.3 62.5 534 24-630 28-614 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 7.3E-60 2.5E-64 573.0 58.0 559 23-629 624-1248(1249)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-57 3.9E-62 553.6 60.1 530 50-630 609-1158(1249)
8 1pgu_A Actin interacting prote 100.0 7.9E-56 2.7E-60 497.5 57.7 496 23-588 73-614 (615)
9 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-54 4.2E-59 500.4 59.7 542 23-630 26-783 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-54 5.9E-59 499.1 54.2 537 54-630 15-732 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-48 5.8E-53 452.7 50.1 465 86-617 6-487 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-47 5.7E-52 444.3 50.5 470 47-585 4-502 (814)
13 1vyh_C Platelet-activating fac 100.0 1.4E-43 4.7E-48 374.4 37.7 310 173-587 100-410 (410)
14 3ow8_A WD repeat-containing pr 100.0 6.7E-43 2.3E-47 355.7 40.8 292 171-587 22-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 1.3E-42 4.4E-47 357.6 41.6 292 214-585 46-340 (340)
16 3ow8_A WD repeat-containing pr 100.0 7.4E-43 2.5E-47 355.4 38.0 289 261-629 26-320 (321)
17 2ynn_A Coatomer subunit beta'; 100.0 3.5E-42 1.2E-46 348.3 42.6 293 172-588 4-302 (304)
18 1vyh_C Platelet-activating fac 100.0 1.2E-42 4.2E-47 367.1 40.3 288 260-629 101-410 (410)
19 1r5m_A SIR4-interacting protei 100.0 4.5E-42 1.5E-46 366.6 42.3 342 161-587 25-424 (425)
20 2pbi_B Guanine nucleotide-bind 100.0 6.8E-42 2.3E-46 353.7 40.7 289 172-585 55-354 (354)
21 2ynn_A Coatomer subunit beta'; 100.0 1.7E-41 5.8E-46 343.2 42.6 290 215-630 5-302 (304)
22 3frx_A Guanine nucleotide-bind 100.0 2.1E-41 7.1E-46 345.0 42.4 291 172-589 8-318 (319)
23 3iz6_a 40S ribosomal protein R 100.0 7E-43 2.4E-47 365.4 32.3 307 161-591 46-378 (380)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-41 6E-46 349.7 39.7 307 170-595 4-342 (345)
25 1r5m_A SIR4-interacting protei 100.0 1.5E-41 5.3E-46 362.5 40.3 357 203-629 25-424 (425)
26 4g56_B MGC81050 protein; prote 100.0 2E-42 6.7E-47 358.0 32.2 322 229-631 10-344 (357)
27 4g56_B MGC81050 protein; prote 100.0 3.2E-42 1.1E-46 356.3 32.8 310 153-589 18-344 (357)
28 1got_B GT-beta; complex (GTP-b 100.0 1.3E-40 4.5E-45 342.6 42.3 289 130-502 48-340 (340)
29 4gqb_B Methylosome protein 50; 100.0 1.9E-41 6.4E-46 347.3 34.8 299 163-591 16-334 (344)
30 2hes_X YDR267CP; beta-propelle 100.0 1.4E-40 4.8E-45 340.6 41.1 299 169-588 2-328 (330)
31 1gxr_A ESG1, transducin-like e 100.0 9.6E-41 3.3E-45 344.2 38.9 327 224-629 9-336 (337)
32 4ery_A WD repeat-containing pr 100.0 4.8E-40 1.6E-44 334.7 43.4 294 170-587 12-311 (312)
33 4gqb_B Methylosome protein 50; 100.0 4E-41 1.4E-45 344.9 35.3 298 205-630 16-331 (344)
34 2pbi_B Guanine nucleotide-bind 100.0 3.9E-40 1.3E-44 340.5 40.9 294 258-627 55-354 (354)
35 2xzm_R RACK1; ribosome, transl 100.0 3.1E-40 1.1E-44 340.4 39.0 304 172-590 12-342 (343)
36 2pm9_A Protein WEB1, protein t 100.0 1.1E-41 3.8E-46 362.5 26.0 342 225-630 13-414 (416)
37 1gxr_A ESG1, transducin-like e 100.0 5.8E-40 2E-44 338.4 37.6 323 136-587 8-336 (337)
38 3iz6_a 40S ribosomal protein R 100.0 5.3E-41 1.8E-45 351.2 29.4 318 115-507 48-377 (380)
39 3frx_A Guanine nucleotide-bind 100.0 2.1E-39 7E-44 330.2 39.1 298 130-506 10-318 (319)
40 2pm9_A Protein WEB1, protein t 100.0 2.2E-41 7.6E-46 360.2 25.6 334 182-589 13-415 (416)
41 3vl1_A 26S proteasome regulato 100.0 1.8E-39 6.2E-44 345.8 39.9 339 98-588 63-419 (420)
42 4aow_A Guanine nucleotide-bind 100.0 6.1E-39 2.1E-43 331.2 42.1 297 169-590 26-339 (340)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-39 1.9E-43 331.0 39.5 324 130-512 8-342 (345)
44 1erj_A Transcriptional repress 100.0 1.1E-38 3.7E-43 335.2 42.0 290 223-589 63-390 (393)
45 4ery_A WD repeat-containing pr 100.0 1.1E-38 3.7E-43 324.7 40.5 290 258-629 14-311 (312)
46 3vl1_A 26S proteasome regulato 100.0 1.4E-40 4.9E-45 354.4 27.2 343 183-629 58-418 (420)
47 2hes_X YDR267CP; beta-propelle 100.0 4.5E-38 1.6E-42 322.0 40.8 254 84-345 5-280 (330)
48 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.1E-38 3.1E-42 334.9 43.2 323 170-588 107-442 (445)
49 1erj_A Transcriptional repress 100.0 1.1E-37 3.7E-42 327.6 42.2 318 114-506 41-390 (393)
50 2xzm_R RACK1; ribosome, transl 100.0 9.9E-38 3.4E-42 321.7 40.2 304 86-456 14-341 (343)
51 3v7d_B Cell division control p 100.0 3.9E-37 1.3E-41 332.3 45.6 326 172-585 112-460 (464)
52 3zwl_B Eukaryotic translation 100.0 2.2E-37 7.5E-42 323.5 41.7 306 217-593 26-351 (369)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.4E-37 2.9E-41 327.4 45.6 329 85-506 110-443 (445)
54 4a11_B DNA excision repair pro 100.0 2.1E-38 7.3E-43 336.1 31.9 360 159-629 21-404 (408)
55 2j04_B YDR362CP, TAU91; beta p 100.0 5.8E-39 2E-43 345.2 27.5 309 195-588 175-517 (524)
56 3v7d_B Cell division control p 100.0 2.1E-36 7E-41 326.6 45.0 322 85-501 113-459 (464)
57 3dm0_A Maltose-binding peripla 100.0 4.7E-37 1.6E-41 348.2 41.3 288 221-587 379-692 (694)
58 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-36 5.1E-41 309.2 40.7 296 170-599 7-307 (313)
59 1sq9_A Antiviral protein SKI8; 100.0 4.3E-37 1.5E-41 324.8 37.9 297 173-590 8-397 (397)
60 3ei3_B DNA damage-binding prot 100.0 2.7E-37 9.3E-42 324.4 36.0 300 164-588 56-382 (383)
61 4aow_A Guanine nucleotide-bind 100.0 2.2E-36 7.7E-41 312.0 40.8 301 130-507 31-339 (340)
62 1k32_A Tricorn protease; prote 100.0 1.6E-35 5.5E-40 350.3 53.3 499 26-632 24-639 (1045)
63 1k8k_C P40, ARP2/3 complex 41 100.0 7.9E-37 2.7E-41 319.7 37.2 312 177-591 4-364 (372)
64 3k26_A Polycomb protein EED; W 100.0 2.1E-37 7.2E-42 323.3 32.2 314 177-588 14-366 (366)
65 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-38 5.2E-43 341.9 23.7 354 55-506 132-518 (524)
66 3ei3_B DNA damage-binding prot 100.0 6.3E-37 2.1E-41 321.6 33.9 297 252-630 58-382 (383)
67 3gre_A Serine/threonine-protei 100.0 4.8E-38 1.6E-42 336.6 25.7 350 144-585 34-437 (437)
68 4gga_A P55CDC, cell division c 100.0 2.9E-36 9.8E-41 320.2 38.8 291 183-596 107-403 (420)
69 3i2n_A WD repeat-containing pr 100.0 6.6E-37 2.3E-41 318.3 32.9 303 213-591 7-356 (357)
70 4aez_A CDC20, WD repeat-contai 100.0 2.2E-36 7.7E-41 319.0 36.9 297 172-595 82-387 (401)
71 1sq9_A Antiviral protein SKI8; 100.0 3.8E-36 1.3E-40 317.5 38.4 298 221-630 13-395 (397)
72 3gre_A Serine/threonine-protei 100.0 1.6E-37 5.3E-42 332.5 27.6 325 188-627 34-437 (437)
73 4e54_B DNA damage-binding prot 100.0 4.7E-37 1.6E-41 327.7 30.9 300 171-592 109-434 (435)
74 3zwl_B Eukaryotic translation 100.0 2E-35 6.7E-40 308.7 41.6 295 261-631 26-347 (369)
75 4h5i_A Guanine nucleotide-exch 100.0 2.9E-36 9.7E-41 312.6 32.9 296 268-635 14-348 (365)
76 3k26_A Polycomb protein EED; W 100.0 2E-36 7E-41 315.8 31.7 322 215-629 9-365 (366)
77 3dm0_A Maltose-binding peripla 100.0 1.2E-35 4E-40 336.7 40.2 293 260-629 375-692 (694)
78 3odt_A Protein DOA1; ubiquitin 100.0 5E-35 1.7E-39 298.0 39.0 284 214-630 9-296 (313)
79 4ggc_A P55CDC, cell division c 100.0 6.5E-35 2.2E-39 297.9 39.8 284 184-590 28-317 (318)
80 2j04_A TAU60, YPL007P, hypothe 100.0 6.3E-38 2.2E-42 326.0 17.1 327 179-618 13-350 (588)
81 4a11_B DNA excision repair pro 100.0 5.8E-36 2E-40 317.4 31.2 353 112-546 22-405 (408)
82 3i2n_A WD repeat-containing pr 100.0 2E-35 6.7E-40 307.2 34.2 299 256-630 6-353 (357)
83 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-34 3.7E-39 303.5 39.1 303 133-507 4-363 (372)
84 4e54_B DNA damage-binding prot 100.0 1.7E-35 5.9E-40 315.6 32.5 291 260-630 112-430 (435)
85 3dw8_B Serine/threonine-protei 100.0 2E-35 6.8E-40 317.4 32.6 331 266-629 26-445 (447)
86 3dwl_C Actin-related protein 2 100.0 1.4E-36 4.7E-41 318.4 22.3 339 177-586 7-377 (377)
87 4h5i_A Guanine nucleotide-exch 100.0 1E-34 3.5E-39 300.9 34.8 282 55-346 13-344 (365)
88 4gga_A P55CDC, cell division c 100.0 5.3E-34 1.8E-38 302.7 40.3 288 140-513 108-403 (420)
89 2j04_A TAU60, YPL007P, hypothe 100.0 4.1E-37 1.4E-41 320.0 15.2 321 137-576 15-349 (588)
90 4aez_A CDC20, WD repeat-contai 100.0 2.4E-34 8.2E-39 303.5 35.6 277 152-512 104-387 (401)
91 3dwl_C Actin-related protein 2 100.0 1.9E-35 6.6E-40 309.7 25.7 301 133-503 7-377 (377)
92 1p22_A F-BOX/WD-repeat protein 100.0 3.9E-34 1.3E-38 305.4 34.1 296 177-608 129-434 (435)
93 1k32_A Tricorn protease; prote 100.0 7.4E-33 2.5E-37 327.6 47.5 443 92-628 13-500 (1045)
94 3f3f_A Nucleoporin SEH1; struc 100.0 8.3E-34 2.8E-38 293.8 33.1 315 219-596 6-345 (351)
95 2pm7_B Protein transport prote 100.0 1.5E-33 5.2E-38 283.8 33.7 254 87-345 3-285 (297)
96 4ggc_A P55CDC, cell division c 100.0 7.1E-33 2.4E-37 282.7 38.4 282 141-507 29-317 (318)
97 3mmy_A MRNA export factor; mRN 100.0 1.2E-33 4E-38 295.1 33.1 298 164-587 22-345 (368)
98 3dw8_B Serine/threonine-protei 100.0 2.3E-33 7.9E-38 301.3 36.3 290 224-587 28-445 (447)
99 1yfq_A Cell cycle arrest prote 100.0 4.8E-33 1.7E-37 287.2 36.7 280 220-586 7-322 (342)
100 2pm7_B Protein transport prote 100.0 3.5E-33 1.2E-37 281.1 34.2 247 308-629 3-284 (297)
101 1p22_A F-BOX/WD-repeat protein 100.0 3.2E-33 1.1E-37 298.4 34.9 236 89-346 129-366 (435)
102 3jrp_A Fusion protein of prote 100.0 5.7E-34 1.9E-38 298.8 27.4 336 171-629 1-377 (379)
103 1yfq_A Cell cycle arrest prote 100.0 5E-33 1.7E-37 287.1 33.3 272 265-620 8-314 (342)
104 1l0q_A Surface layer protein; 100.0 9.4E-32 3.2E-36 283.1 42.7 331 153-617 4-366 (391)
105 3bg1_A Protein SEC13 homolog; 100.0 1.1E-33 3.9E-38 287.4 25.7 252 89-344 9-292 (316)
106 3mmy_A MRNA export factor; mRN 100.0 3.9E-32 1.3E-36 283.5 34.0 286 252-620 24-337 (368)
107 3bg1_A Protein SEC13 homolog; 100.0 2E-32 6.8E-37 278.2 30.4 252 176-504 8-292 (316)
108 3jrp_A Fusion protein of prote 100.0 2.9E-32 9.8E-37 285.8 32.1 262 130-459 4-291 (379)
109 3bws_A Protein LP49; two-domai 100.0 7.8E-31 2.7E-35 280.3 42.1 298 248-630 102-432 (433)
110 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-31 3.9E-36 277.7 34.2 299 132-512 6-344 (351)
111 3bws_A Protein LP49; two-domai 100.0 4.6E-31 1.6E-35 282.0 38.7 299 204-588 102-432 (433)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-32 5E-37 290.1 26.4 288 227-590 37-344 (402)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 3.2E-32 1.1E-36 287.5 28.8 284 142-549 39-345 (402)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.1E-31 1.4E-35 283.3 37.0 286 182-587 5-390 (450)
115 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-31 1.8E-35 272.2 32.9 306 165-590 3-338 (355)
116 1l0q_A Surface layer protein; 100.0 7E-30 2.4E-34 268.8 41.8 277 238-600 3-287 (391)
117 2w18_A PALB2, fancn, partner a 100.0 5.3E-30 1.8E-34 250.0 36.0 289 171-628 25-355 (356)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-30 7.4E-35 277.6 34.8 285 268-629 4-390 (450)
119 2xyi_A Probable histone-bindin 100.0 3.3E-30 1.1E-34 274.1 34.3 256 265-589 125-411 (430)
120 2w18_A PALB2, fancn, partner a 100.0 7E-30 2.4E-34 249.1 33.5 266 26-343 53-355 (356)
121 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-30 7.7E-35 267.5 30.1 292 40-348 3-339 (355)
122 3jro_A Fusion protein of prote 100.0 2.7E-31 9.1E-36 302.3 25.0 262 174-507 2-287 (753)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-30 8.7E-35 266.4 29.5 232 101-346 46-293 (343)
124 1nir_A Nitrite reductase; hemo 100.0 4E-29 1.4E-33 271.2 37.4 332 144-599 144-525 (543)
125 2xyi_A Probable histone-bindin 100.0 2.7E-29 9.4E-34 267.1 34.5 257 87-346 122-411 (430)
126 3lrv_A PRE-mRNA-splicing facto 100.0 3.7E-30 1.3E-34 265.1 26.9 266 152-545 49-332 (343)
127 4gq1_A NUP37; propeller, trans 100.0 4.4E-30 1.5E-34 269.3 27.8 287 178-587 86-388 (393)
128 3jro_A Fusion protein of prote 100.0 2.4E-30 8.3E-35 294.4 26.5 262 131-460 3-290 (753)
129 4gq1_A NUP37; propeller, trans 100.0 1.5E-29 5.2E-34 265.2 27.1 203 417-629 129-388 (393)
130 1nir_A Nitrite reductase; hemo 100.0 5.7E-28 2E-32 262.2 37.3 347 95-571 141-533 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 4E-27 1.4E-31 248.1 29.3 300 225-611 63-410 (415)
132 2ecf_A Dipeptidyl peptidase IV 100.0 1.4E-26 4.7E-31 265.3 34.0 355 181-629 36-458 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.9E-26 6.4E-31 243.0 31.1 295 144-570 69-410 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.6E-25 5.5E-30 255.7 28.9 367 140-595 19-450 (723)
135 1xfd_A DIP, dipeptidyl aminope 99.9 3.6E-26 1.2E-30 261.0 23.5 350 182-619 17-430 (723)
136 2ecf_A Dipeptidyl peptidase IV 99.9 4.6E-25 1.6E-29 252.6 30.7 334 137-554 36-466 (741)
137 1ri6_A Putative isomerase YBHE 99.9 3.7E-24 1.3E-28 220.6 33.9 298 239-611 7-335 (343)
138 2z3z_A Dipeptidyl aminopeptida 99.9 9E-25 3.1E-29 248.6 31.5 366 184-606 28-452 (706)
139 3u4y_A Uncharacterized protein 99.9 4E-24 1.4E-28 219.1 31.9 283 230-590 3-306 (331)
140 2z3z_A Dipeptidyl aminopeptida 99.9 2.9E-24 1E-28 244.4 33.8 329 227-630 28-435 (706)
141 3u4y_A Uncharacterized protein 99.9 5.9E-23 2E-27 210.4 32.7 289 144-508 4-307 (331)
142 1ri6_A Putative isomerase YBHE 99.9 1E-22 3.5E-27 209.7 33.5 303 153-528 6-335 (343)
143 3vgz_A Uncharacterized protein 99.9 2E-22 6.7E-27 208.6 35.7 277 181-579 40-335 (353)
144 1pby_B Quinohemoprotein amine 99.9 1.7E-22 5.7E-27 207.6 34.3 299 152-557 2-321 (337)
145 3vgz_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 206.9 35.1 280 267-620 39-335 (353)
146 1pby_B Quinohemoprotein amine 99.9 1.2E-22 4E-27 208.8 30.5 298 194-599 2-321 (337)
147 2ojh_A Uncharacterized protein 99.9 1.4E-22 4.7E-27 203.9 28.3 253 243-620 18-293 (297)
148 1z68_A Fibroblast activation p 99.9 8.5E-23 2.9E-27 232.7 28.2 369 141-596 19-451 (719)
149 2ojh_A Uncharacterized protein 99.9 2.1E-22 7.2E-27 202.5 26.6 256 199-579 18-293 (297)
150 1jmx_B Amine dehydrogenase; ox 99.9 2.2E-21 7.6E-26 200.3 29.9 303 186-556 4-335 (349)
151 3scy_A Hypothetical bacterial 99.9 1.3E-20 4.5E-25 195.3 35.7 310 239-607 15-360 (361)
152 1z68_A Fibroblast activation p 99.9 3E-22 1E-26 228.1 24.5 356 186-629 20-442 (719)
153 3scy_A Hypothetical bacterial 99.9 3.2E-20 1.1E-24 192.5 36.4 281 281-630 14-337 (361)
154 4a5s_A Dipeptidyl peptidase 4 99.9 9.5E-21 3.2E-25 215.5 35.4 369 140-596 19-457 (740)
155 3o4h_A Acylamino-acid-releasin 99.9 1E-21 3.4E-26 217.8 26.6 272 266-629 19-314 (582)
156 3hfq_A Uncharacterized protein 99.9 3.1E-20 1.1E-24 191.3 35.6 284 246-593 15-324 (347)
157 1jmx_B Amine dehydrogenase; ox 99.9 7.3E-21 2.5E-25 196.4 29.2 294 229-599 4-336 (349)
158 3hfq_A Uncharacterized protein 99.9 7.8E-20 2.7E-24 188.4 36.4 288 152-509 3-323 (347)
159 3o4h_A Acylamino-acid-releasin 99.9 7.8E-21 2.7E-25 210.6 26.8 270 224-588 21-315 (582)
160 4a5s_A Dipeptidyl peptidase 4 99.9 7.3E-20 2.5E-24 208.3 30.9 360 182-629 17-448 (740)
161 3pe7_A Oligogalacturonate lyas 99.9 7.2E-20 2.5E-24 192.0 25.2 300 250-629 13-381 (388)
162 2oiz_A Aromatic amine dehydrog 99.9 5.9E-19 2E-23 181.6 30.9 284 245-611 29-360 (361)
163 3pe7_A Oligogalacturonate lyas 99.8 1.3E-19 4.6E-24 189.9 26.4 301 164-586 13-380 (388)
164 2oiz_A Aromatic amine dehydrog 99.8 2.3E-18 7.9E-23 177.2 33.8 301 152-570 16-360 (361)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.1E-19 1.4E-23 184.0 28.2 277 283-631 5-342 (365)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 6.4E-20 2.2E-24 193.5 20.2 205 425-631 37-279 (434)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.5E-18 8.4E-23 178.1 31.5 288 153-506 4-342 (365)
168 3c5m_A Oligogalacturonate lyas 99.8 1.3E-19 4.3E-24 190.7 22.2 318 164-591 13-387 (396)
169 2oit_A Nucleoporin 214KDA; NH2 99.8 5.2E-18 1.8E-22 178.9 34.0 259 75-343 23-331 (434)
170 3c5m_A Oligogalacturonate lyas 99.8 4.6E-20 1.6E-24 194.1 17.3 314 206-629 13-381 (396)
171 1qks_A Cytochrome CD1 nitrite 99.8 2E-16 6.9E-21 170.7 40.0 326 152-597 168-547 (567)
172 3azo_A Aminopeptidase; POP fam 99.8 3.5E-17 1.2E-21 184.4 26.7 327 177-586 19-409 (662)
173 3azo_A Aminopeptidase; POP fam 99.8 5.1E-17 1.8E-21 183.1 27.7 293 223-595 22-376 (662)
174 1qks_A Cytochrome CD1 nitrite 99.8 3.8E-15 1.3E-19 160.7 39.8 338 102-514 166-547 (567)
175 1q7f_A NHL, brain tumor CG1071 99.7 1.5E-15 5.1E-20 151.4 30.1 242 312-629 27-279 (286)
176 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-16 2.4E-20 156.8 27.8 272 313-630 22-322 (329)
177 3fvz_A Peptidyl-glycine alpha- 99.7 9.9E-16 3.4E-20 155.8 27.6 252 224-588 23-322 (329)
178 2gop_A Trilobed protease; beta 99.7 2.1E-15 7E-20 155.2 30.2 271 182-560 15-343 (347)
179 2dg1_A DRP35, lactonase; beta 99.7 1.1E-15 3.8E-20 156.1 26.4 268 269-619 6-300 (333)
180 1q7f_A NHL, brain tumor CG1071 99.7 3.5E-15 1.2E-19 148.7 28.8 242 266-590 27-282 (286)
181 2gop_A Trilobed protease; beta 99.7 2E-15 6.8E-20 155.3 26.8 182 427-629 106-330 (347)
182 3dsm_A Uncharacterized protein 99.7 4.9E-15 1.7E-19 150.3 27.8 280 245-607 15-320 (328)
183 3dsm_A Uncharacterized protein 99.7 1.4E-14 4.6E-19 147.1 30.6 280 159-524 15-320 (328)
184 2dg1_A DRP35, lactonase; beta 99.7 5E-15 1.7E-19 151.3 27.1 270 225-579 6-301 (333)
185 4a2l_A BT_4663, two-component 99.7 3.1E-11 1.1E-15 138.3 61.2 511 25-629 52-613 (795)
186 3sjl_D Methylamine dehydrogena 99.7 2.2E-14 7.7E-19 144.4 30.0 304 143-526 38-384 (386)
187 4a2l_A BT_4663, two-component 99.7 8.6E-11 2.9E-15 134.7 63.2 509 26-630 98-659 (795)
188 3sjl_D Methylamine dehydrogena 99.7 7.2E-14 2.5E-18 140.7 31.7 307 187-568 38-384 (386)
189 2xdw_A Prolyl endopeptidase; a 99.7 2.1E-14 7.3E-19 162.5 31.2 279 278-630 81-414 (710)
190 2xdw_A Prolyl endopeptidase; a 99.7 2.7E-14 9.2E-19 161.7 32.0 284 191-590 81-416 (710)
191 2z2n_A Virginiamycin B lyase; 99.7 5.2E-13 1.8E-17 133.8 38.0 280 224-590 14-297 (299)
192 3e5z_A Putative gluconolactona 99.7 3.3E-14 1.1E-18 142.4 27.3 238 311-628 24-284 (296)
193 2bkl_A Prolyl endopeptidase; m 99.6 1E-14 3.5E-19 164.5 24.6 278 277-630 76-397 (695)
194 2z2n_A Virginiamycin B lyase; 99.6 1.1E-12 3.9E-17 131.3 37.1 283 178-548 11-297 (299)
195 2mad_H Methylamine dehydrogena 99.6 1.2E-12 4.2E-17 134.3 36.9 280 231-595 27-357 (373)
196 3e5z_A Putative gluconolactona 99.6 9.5E-14 3.3E-18 139.0 27.4 253 172-510 18-291 (296)
197 2mad_H Methylamine dehydrogena 99.6 2E-12 6.8E-17 132.7 37.6 286 101-512 30-357 (373)
198 3no2_A Uncharacterized protein 99.6 1.9E-13 6.6E-18 134.1 26.6 189 152-351 6-201 (276)
199 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-13 3.8E-18 156.1 28.3 278 233-591 76-400 (695)
200 3no2_A Uncharacterized protein 99.6 2E-13 6.8E-18 134.0 26.3 243 279-599 4-263 (276)
201 3v9f_A Two-component system se 99.6 5.3E-10 1.8E-14 127.9 57.9 512 24-629 27-610 (781)
202 1rwi_B Serine/threonine-protei 99.6 1.5E-13 5E-18 135.6 24.8 241 270-591 25-267 (270)
203 3c75_H MADH, methylamine dehyd 99.6 1.2E-12 4.1E-17 134.6 30.9 289 191-553 82-409 (426)
204 1rwi_B Serine/threonine-protei 99.6 3.5E-13 1.2E-17 132.9 24.1 196 425-630 67-264 (270)
205 3v9f_A Two-component system se 99.6 3.9E-09 1.3E-13 120.7 60.9 509 29-629 80-655 (781)
206 3c75_H MADH, methylamine dehyd 99.6 1.6E-12 5.5E-17 133.6 29.3 288 152-512 85-409 (426)
207 2qc5_A Streptogramin B lactona 99.6 2.6E-11 8.8E-16 121.4 37.8 278 179-586 17-298 (300)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.7E-12 9.1E-17 129.7 30.3 199 425-630 71-299 (314)
209 1yr2_A Prolyl oligopeptidase; 99.6 4.4E-13 1.5E-17 152.3 26.6 277 277-630 115-441 (741)
210 1yr2_A Prolyl oligopeptidase; 99.6 2.9E-13 1E-17 153.8 24.8 283 190-554 115-448 (741)
211 2qc5_A Streptogramin B lactona 99.5 6.4E-11 2.2E-15 118.5 34.6 276 139-503 21-298 (300)
212 1yiq_A Quinohemoprotein alcoho 99.5 1.1E-11 3.7E-16 138.1 29.9 336 152-577 71-538 (689)
213 1kb0_A Quinohemoprotein alcoho 99.5 5.8E-11 2E-15 132.0 32.5 334 152-574 78-536 (677)
214 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.3E-10 4.5E-15 120.5 32.3 295 152-543 54-375 (376)
215 3g4e_A Regucalcin; six bladed 99.4 7.9E-11 2.7E-15 117.5 28.8 190 425-620 54-263 (297)
216 1mda_H Methylamine dehydrogena 99.4 1.5E-11 5.1E-16 124.4 22.3 279 239-609 34-367 (368)
217 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.6E-10 5.6E-15 116.4 30.2 248 181-505 17-299 (314)
218 3hrp_A Uncharacterized protein 99.4 5E-11 1.7E-15 124.2 26.7 191 430-628 176-408 (409)
219 1kb0_A Quinohemoprotein alcoho 99.4 5E-10 1.7E-14 124.4 35.8 293 26-331 77-536 (677)
220 1xip_A Nucleoporin NUP159; bet 99.4 1.6E-11 5.6E-16 124.3 20.8 133 425-576 89-232 (388)
221 2qe8_A Uncharacterized protein 99.4 5E-11 1.7E-15 121.6 24.7 275 172-539 10-314 (343)
222 1mda_H Methylamine dehydrogena 99.4 2.2E-11 7.6E-16 123.1 21.6 257 114-463 47-354 (368)
223 1xip_A Nucleoporin NUP159; bet 99.4 6.9E-12 2.4E-16 127.0 17.8 177 425-617 38-232 (388)
224 2ghs_A AGR_C_1268P; regucalcin 99.4 3.3E-10 1.1E-14 114.5 29.7 187 425-620 90-293 (326)
225 3hrp_A Uncharacterized protein 99.4 1.3E-09 4.5E-14 113.4 34.7 251 77-343 99-408 (409)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.5E-09 8.5E-14 110.8 36.8 297 25-342 52-375 (376)
227 3dr2_A Exported gluconolactona 99.4 1.3E-10 4.3E-15 116.5 25.5 192 425-627 86-303 (305)
228 1fwx_A Nitrous oxide reductase 99.4 1.1E-10 3.7E-15 122.4 25.4 309 196-591 18-434 (595)
229 3ei3_A DNA damage-binding prot 99.4 3.8E-06 1.3E-10 98.0 69.9 564 15-630 326-999 (1158)
230 3g4e_A Regucalcin; six bladed 99.4 5.8E-10 2E-14 111.2 29.1 232 224-535 12-261 (297)
231 1yiq_A Quinohemoprotein alcoho 99.3 1.5E-09 5E-14 121.0 33.8 296 26-331 70-534 (689)
232 2qe8_A Uncharacterized protein 99.3 6.6E-11 2.2E-15 120.7 20.4 264 269-619 17-311 (343)
233 3iuj_A Prolyl endopeptidase; h 99.3 1.9E-10 6.3E-15 129.3 25.0 246 224-591 128-408 (693)
234 3dr2_A Exported gluconolactona 99.3 3.5E-10 1.2E-14 113.3 24.4 255 214-538 35-299 (305)
235 3hxj_A Pyrrolo-quinoline quino 99.3 2.1E-11 7.2E-16 124.1 14.3 300 186-588 24-324 (330)
236 3hxj_A Pyrrolo-quinoline quino 99.3 1.1E-10 3.6E-15 118.8 19.5 294 25-345 29-324 (330)
237 3iuj_A Prolyl endopeptidase; h 99.3 3E-10 1E-14 127.6 24.0 192 428-629 178-404 (693)
238 2ece_A 462AA long hypothetical 99.3 4.1E-09 1.4E-13 106.6 28.3 139 479-617 192-399 (462)
239 2ghs_A AGR_C_1268P; regucalcin 99.2 1.2E-08 4E-13 103.1 30.4 193 141-343 52-258 (326)
240 1kv9_A Type II quinohemoprotei 99.2 5.4E-09 1.9E-13 116.0 29.3 335 152-576 67-520 (668)
241 1flg_A Protein (quinoprotein e 99.2 7.8E-08 2.7E-12 104.5 35.3 380 152-575 69-547 (582)
242 2iwa_A Glutamine cyclotransfer 99.2 9.5E-09 3.2E-13 97.8 24.6 195 425-630 21-237 (266)
243 2hz6_A Endoplasmic reticulum t 99.2 3.7E-13 1.3E-17 138.5 -6.7 260 192-545 8-278 (369)
244 2hz6_A Endoplasmic reticulum t 99.1 2.5E-11 8.6E-16 124.8 4.0 167 433-612 46-217 (369)
245 2ad6_A Methanol dehydrogenase 99.1 1E-07 3.4E-12 103.5 32.2 375 152-574 63-523 (571)
246 2ece_A 462AA long hypothetical 99.1 3.6E-08 1.2E-12 99.8 26.3 228 102-333 94-399 (462)
247 3s94_A LRP-6, low-density lipo 99.1 4.3E-05 1.5E-09 83.4 57.4 510 71-626 14-547 (619)
248 3s94_A LRP-6, low-density lipo 99.1 4.7E-05 1.6E-09 83.1 59.7 471 29-590 11-553 (619)
249 1flg_A Protein (quinoprotein e 99.0 1.2E-07 3.9E-12 103.1 29.7 170 446-617 291-548 (582)
250 3ei3_A DNA damage-binding prot 99.0 0.00013 4.4E-09 85.2 59.6 557 26-627 440-1059(1158)
251 2ad6_A Methanol dehydrogenase 99.0 3.8E-08 1.3E-12 106.8 24.4 341 239-617 64-525 (571)
252 1kv9_A Type II quinohemoprotei 99.0 4.6E-07 1.6E-11 100.6 33.0 266 26-300 66-489 (668)
253 1w6s_A Methanol dehydrogenase 99.0 1.1E-06 3.9E-11 95.0 34.6 376 152-571 63-529 (599)
254 3nol_A Glutamine cyclotransfer 99.0 5.3E-08 1.8E-12 91.2 20.9 182 425-619 43-245 (262)
255 1fwx_A Nitrous oxide reductase 99.0 1.9E-08 6.6E-13 105.5 19.6 223 101-334 99-407 (595)
256 1npe_A Nidogen, entactin; glyc 99.0 5.3E-07 1.8E-11 88.0 29.0 250 194-528 2-263 (267)
257 1w6s_A Methanol dehydrogenase 99.0 2.4E-07 8.1E-12 100.4 28.2 344 239-617 64-535 (599)
258 1npe_A Nidogen, entactin; glyc 99.0 1E-06 3.5E-11 85.9 29.9 241 247-570 10-263 (267)
259 3ott_A Two-component system se 98.9 0.00024 8E-09 80.7 57.6 513 25-630 72-626 (758)
260 3nok_A Glutaminyl cyclase; bet 98.9 3.5E-07 1.2E-11 85.6 23.4 182 425-619 55-255 (268)
261 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00018 6E-09 78.7 63.7 479 29-596 8-557 (628)
262 2iwa_A Glutamine cyclotransfer 98.9 1.1E-06 3.6E-11 83.7 26.4 190 59-257 23-238 (266)
263 3ott_A Two-component system se 98.9 0.00034 1.2E-08 79.4 57.8 537 4-629 9-585 (758)
264 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00025 8.5E-09 77.5 61.1 509 68-627 8-546 (628)
265 3mbr_X Glutamine cyclotransfer 98.8 1.5E-06 5.1E-11 80.8 24.5 183 425-619 21-224 (243)
266 3mbr_X Glutamine cyclotransfer 98.8 3.5E-06 1.2E-10 78.2 25.7 185 91-288 16-223 (243)
267 2fp8_A Strictosidine synthase; 98.8 2E-06 6.8E-11 86.5 25.2 200 425-632 80-315 (322)
268 3nol_A Glutamine cyclotransfer 98.7 2.2E-06 7.7E-11 80.2 22.4 186 91-288 38-244 (262)
269 3nok_A Glutaminyl cyclase; bet 98.7 3.5E-06 1.2E-10 78.9 22.8 184 91-288 50-254 (268)
270 2p4o_A Hypothetical protein; p 98.7 1E-05 3.5E-10 80.5 27.2 185 425-620 72-279 (306)
271 1k3i_A Galactose oxidase precu 98.6 2.7E-06 9.4E-11 94.6 22.2 114 186-300 190-324 (656)
272 2fp8_A Strictosidine synthase; 98.6 1.8E-05 6.1E-10 79.5 25.7 152 425-588 126-313 (322)
273 2p4o_A Hypothetical protein; p 98.6 8.4E-05 2.9E-09 73.8 30.1 242 170-495 21-278 (306)
274 3qqz_A Putative uncharacterize 98.6 0.00011 3.8E-09 69.4 28.6 167 176-344 21-203 (255)
275 4hw6_A Hypothetical protein, I 98.5 0.00078 2.7E-08 70.1 37.4 196 140-342 141-371 (433)
276 1k3i_A Galactose oxidase precu 98.5 1.2E-05 4.2E-10 89.4 24.9 273 272-618 189-530 (656)
277 3qqz_A Putative uncharacterize 98.5 5.7E-05 2E-09 71.3 24.8 195 422-627 24-250 (255)
278 3tc9_A Hypothetical hydrolase; 98.5 4.5E-05 1.5E-09 79.5 26.4 193 425-628 179-428 (430)
279 3v64_C Agrin; beta propeller, 98.4 0.00039 1.3E-08 70.2 30.9 245 184-514 36-284 (349)
280 1ijq_A LDL receptor, low-densi 98.4 0.00078 2.7E-08 67.0 32.6 185 153-344 3-194 (316)
281 1ijq_A LDL receptor, low-densi 98.4 0.00084 2.9E-08 66.7 32.0 232 246-556 9-248 (316)
282 3v64_C Agrin; beta propeller, 98.4 0.00078 2.7E-08 68.0 31.7 184 153-344 46-233 (349)
283 3p5b_L Low density lipoprotein 98.4 0.0006 2.1E-08 70.2 31.3 248 239-566 85-340 (400)
284 3tc9_A Hypothetical hydrolase; 98.4 8.4E-05 2.9E-09 77.5 24.8 154 140-300 139-302 (430)
285 4hw6_A Hypothetical protein, I 98.4 0.0002 6.8E-09 74.6 27.3 194 425-628 182-431 (433)
286 3v65_B Low-density lipoprotein 98.3 0.00032 1.1E-08 72.0 28.2 243 239-565 89-337 (386)
287 2xbg_A YCF48-like protein; pho 98.3 0.0019 6.4E-08 64.6 33.2 273 56-342 35-319 (327)
288 2xbg_A YCF48-like protein; pho 98.3 0.0013 4.4E-08 65.8 32.0 149 425-585 163-319 (327)
289 3v65_B Low-density lipoprotein 98.3 0.00065 2.2E-08 69.7 29.5 184 153-344 89-276 (386)
290 2xe4_A Oligopeptidase B; hydro 98.3 5.6E-05 1.9E-09 85.3 22.2 190 426-628 175-396 (751)
291 2xe4_A Oligopeptidase B; hydro 98.3 0.00013 4.4E-09 82.4 24.7 116 226-345 175-304 (751)
292 3p5b_L Low density lipoprotein 98.2 0.0036 1.2E-07 64.4 33.5 185 153-344 85-276 (400)
293 3amr_A 3-phytase; beta-propell 98.2 0.00025 8.7E-09 69.4 23.0 150 445-597 98-273 (355)
294 3sov_A LRP-6, low-density lipo 98.2 0.00062 2.1E-08 67.5 26.2 238 195-515 6-248 (318)
295 3sov_A LRP-6, low-density lipo 98.2 0.001 3.4E-08 66.0 27.3 240 246-565 12-257 (318)
296 2xzh_A Clathrin heavy chain 1; 98.1 0.0063 2.1E-07 58.3 29.3 267 160-506 48-333 (365)
297 3amr_A 3-phytase; beta-propell 98.1 0.00057 2E-08 66.9 23.0 183 435-630 39-263 (355)
298 3m0c_C LDL receptor, low-densi 98.1 0.0034 1.2E-07 70.1 30.6 240 245-564 402-650 (791)
299 2xzh_A Clathrin heavy chain 1; 98.0 0.011 3.7E-07 56.7 28.6 280 8-300 17-333 (365)
300 3kya_A Putative phosphatase; s 98.0 0.0027 9.4E-08 66.0 26.7 231 389-631 151-476 (496)
301 1bpo_A Protein (clathrin); cla 98.0 0.014 4.9E-07 58.2 29.5 268 160-507 47-333 (494)
302 1bpo_A Protein (clathrin); cla 97.9 0.018 6.2E-07 57.5 29.4 281 7-300 15-332 (494)
303 3kya_A Putative phosphatase; s 97.9 0.0092 3.2E-07 62.1 28.8 158 183-344 140-340 (496)
304 3m0c_C LDL receptor, low-densi 97.9 0.0096 3.3E-07 66.5 30.4 185 153-344 397-588 (791)
305 2ism_A Putative oxidoreductase 97.9 0.0058 2E-07 61.6 26.1 190 425-618 75-334 (352)
306 1n7d_A LDL receptor, low-densi 97.8 0.00013 4.4E-09 81.1 13.3 245 245-568 384-636 (699)
307 2p9w_A MAL S 1 allergenic prot 97.8 0.0046 1.6E-07 60.0 21.9 163 425-589 13-216 (334)
308 2ism_A Putative oxidoreductase 97.8 0.0036 1.2E-07 63.1 22.4 60 516-576 268-333 (352)
309 2p9w_A MAL S 1 allergenic prot 97.7 0.026 8.8E-07 54.8 26.2 163 134-299 9-215 (334)
310 3a9g_A Putative uncharacterize 97.5 0.073 2.5E-06 53.4 28.1 190 425-617 73-330 (354)
311 1n7d_A LDL receptor, low-densi 97.5 0.00024 8.1E-09 79.0 10.4 179 159-344 384-570 (699)
312 2g8s_A Glucose/sorbosone dehyd 97.4 0.046 1.6E-06 54.9 25.1 69 558-628 271-350 (353)
313 3sre_A PON1, serum paraoxonase 97.4 0.028 9.5E-07 56.0 22.6 191 426-620 51-288 (355)
314 3sre_A PON1, serum paraoxonase 97.4 0.025 8.5E-07 56.3 22.2 152 477-629 52-251 (355)
315 3sbq_A Nitrous-oxide reductase 97.3 0.14 4.9E-06 52.9 25.7 101 475-576 323-453 (638)
316 2vpj_A Kelch-like protein 12; 97.2 0.016 5.4E-07 57.0 18.5 219 113-346 31-279 (301)
317 2vpj_A Kelch-like protein 12; 97.2 0.11 3.7E-06 50.9 23.7 202 77-289 33-263 (301)
318 3a9g_A Putative uncharacterize 97.1 0.26 8.9E-06 49.4 30.8 143 138-286 29-215 (354)
319 2xn4_A Kelch-like protein 2; s 97.1 0.03 1E-06 55.0 19.1 220 113-347 30-278 (302)
320 3ii7_A Kelch-like protein 7; p 97.1 0.048 1.6E-06 53.7 20.5 221 112-347 23-274 (306)
321 3ii7_A Kelch-like protein 7; p 97.1 0.18 6.2E-06 49.4 24.7 196 101-309 54-280 (306)
322 2g8s_A Glucose/sorbosone dehyd 97.1 0.3 1E-05 48.9 27.7 60 474-533 270-340 (353)
323 3s25_A Hypothetical 7-bladed b 97.0 0.18 6.3E-06 49.0 23.6 165 431-620 110-283 (302)
324 1xi4_A Clathrin heavy chain; a 97.0 0.065 2.2E-06 62.1 22.3 231 160-462 47-296 (1630)
325 3das_A Putative oxidoreductase 97.0 0.31 1.1E-05 48.1 29.6 112 224-336 31-161 (347)
326 2xn4_A Kelch-like protein 2; s 97.0 0.083 2.9E-06 51.8 21.3 225 25-259 15-279 (302)
327 1xi4_A Clathrin heavy chain; a 96.9 0.081 2.8E-06 61.3 21.4 279 7-300 15-332 (1630)
328 3pbp_A Nucleoporin NUP82; beta 96.9 0.094 3.2E-06 52.5 19.4 133 482-617 28-198 (452)
329 1zgk_A Kelch-like ECH-associat 96.6 0.07 2.4E-06 52.5 17.0 229 102-346 24-288 (308)
330 2be1_A Serine/threonine-protei 96.6 0.069 2.4E-06 52.6 16.3 112 152-265 11-139 (339)
331 4asc_A Kelch repeat and BTB do 96.5 0.37 1.3E-05 47.4 21.9 214 36-259 13-280 (315)
332 3pbp_A Nucleoporin NUP82; beta 96.5 0.25 8.5E-06 49.5 19.8 148 191-341 30-208 (452)
333 4asc_A Kelch repeat and BTB do 96.5 0.17 5.8E-06 49.9 19.4 208 400-619 13-253 (315)
334 1cru_A Protein (soluble quinop 96.4 0.28 9.5E-06 51.0 20.9 153 476-628 28-257 (454)
335 3das_A Putative oxidoreductase 96.4 0.21 7E-06 49.5 18.4 142 475-617 32-220 (347)
336 1tl2_A L10, protein (tachylect 96.3 0.2 6.8E-06 45.2 15.9 138 475-620 41-201 (236)
337 2be1_A Serine/threonine-protei 96.2 0.068 2.3E-06 52.6 13.9 113 436-555 10-139 (339)
338 1tl2_A L10, protein (tachylect 96.2 0.081 2.8E-06 47.7 12.9 150 425-586 41-206 (236)
339 2woz_A Kelch repeat and BTB do 96.2 0.53 1.8E-05 46.3 20.6 220 114-347 25-289 (318)
340 1zgk_A Kelch-like ECH-associat 96.1 0.38 1.3E-05 47.1 19.1 225 25-259 24-290 (308)
341 2uvk_A YJHT; unknown function, 96.1 0.58 2E-05 46.9 20.9 141 203-349 168-346 (357)
342 3s25_A Hypothetical 7-bladed b 96.1 1.2 4E-05 43.3 28.7 136 190-344 22-175 (302)
343 2woz_A Kelch repeat and BTB do 96.1 1.2 4E-05 43.8 22.6 216 35-260 23-291 (318)
344 2uvk_A YJHT; unknown function, 95.9 0.22 7.4E-06 50.2 16.5 220 392-620 23-327 (357)
345 3sbq_A Nitrous-oxide reductase 95.5 0.91 3.1E-05 47.1 18.9 190 434-631 140-409 (638)
346 1cru_A Protein (soluble quinop 95.5 0.51 1.8E-05 49.0 17.8 111 425-535 27-163 (454)
347 3qhy_B Beta-lactamase inhibito 94.9 1.1 3.7E-05 43.0 16.8 214 25-257 32-247 (282)
348 3qhy_B Beta-lactamase inhibito 94.7 1.6 5.4E-05 41.9 17.4 219 56-296 23-243 (282)
349 2zwa_A Leucine carboxyl methyl 93.9 1.7 5.8E-05 48.1 17.8 184 428-619 444-675 (695)
350 2zwa_A Leucine carboxyl methyl 92.4 5.5 0.00019 43.9 19.1 196 152-348 399-638 (695)
351 3no0_A DNA gyrase subunit A; D 91.8 9 0.00031 36.3 20.0 187 425-621 24-236 (276)
352 2wg3_C Hedgehog-interacting pr 88.7 24 0.00082 36.4 26.6 112 225-336 14-160 (463)
353 3q6k_A 43.2 kDa salivary prote 87.5 24 0.00082 35.1 19.3 138 497-636 124-313 (381)
354 3uc1_A DNA gyrase subunit A; D 87.5 22 0.00076 34.6 25.9 151 435-587 108-278 (327)
355 2wg3_C Hedgehog-interacting pr 87.1 30 0.001 35.7 27.6 29 315-343 14-43 (463)
356 4hvt_A Ritya.17583.B, post-pro 86.4 43 0.0015 36.8 23.0 94 444-545 318-429 (711)
357 3uc1_A DNA gyrase subunit A; D 85.8 27 0.00093 34.0 23.7 190 425-621 42-271 (327)
358 1wp5_A Topoisomerase IV; broke 82.4 37 0.0013 32.9 25.3 157 425-588 39-225 (323)
359 1wp5_A Topoisomerase IV; broke 78.7 50 0.0017 32.0 25.6 239 102-345 4-277 (323)
360 3b7f_A Glycosyl hydrolase, BNR 78.3 58 0.002 32.6 30.2 179 152-336 23-254 (394)
361 4fhn_B Nucleoporin NUP120; pro 77.5 65 0.0022 37.8 18.2 39 559-597 239-277 (1139)
362 4gq2_M Nucleoporin NUP120; bet 75.4 25 0.00086 40.3 13.5 40 475-514 236-275 (950)
363 4hvt_A Ritya.17583.B, post-pro 74.7 1E+02 0.0036 33.7 24.1 72 425-504 350-429 (711)
364 4gq2_M Nucleoporin NUP120; bet 72.1 25 0.00085 40.3 12.4 38 559-596 237-274 (950)
365 1suu_A DNA gyrase subunit A; t 71.9 73 0.0025 30.6 29.1 157 425-588 47-231 (312)
366 3f7f_A Nucleoporin NUP120; nuc 67.2 15 0.00052 39.7 8.5 37 95-135 223-259 (729)
367 3zwu_A Alkaline phosphatase PH 67.1 17 0.00059 38.6 8.9 59 560-618 478-550 (592)
368 4a9v_A PHOX; hydrolase, beta-p 63.5 35 0.0012 35.9 10.1 62 558-619 476-551 (592)
369 1suu_A DNA gyrase subunit A; t 62.5 1.1E+02 0.0038 29.3 28.5 196 100-299 5-231 (312)
370 3no0_A DNA gyrase subunit A; D 60.7 1.1E+02 0.0038 28.7 23.9 121 425-546 116-246 (276)
371 3b7f_A Glycosyl hydrolase, BNR 58.6 1.5E+02 0.0051 29.4 29.2 195 141-339 118-366 (394)
372 3l6v_A GYRA, DNA gyrase subuni 58.1 1.5E+02 0.0051 29.3 29.5 111 435-547 112-266 (370)
373 4fhn_B Nucleoporin NUP120; pro 56.2 20 0.00069 42.1 7.9 39 476-514 239-277 (1139)
374 1zi0_A DNA gyrase subunit A; b 54.4 1.5E+02 0.0052 28.3 29.2 122 425-546 146-277 (307)
375 3f7f_A Nucleoporin NUP120; nuc 53.7 62 0.0021 35.1 10.3 87 425-515 162-260 (729)
376 1zi0_A DNA gyrase subunit A; b 52.7 1.6E+02 0.0055 28.1 29.3 152 191-344 1-175 (307)
377 3kci_A Probable E3 ubiquitin-p 46.3 2.3E+02 0.0079 28.0 27.9 148 436-587 168-344 (389)
378 3zwu_A Alkaline phosphatase PH 44.7 63 0.0022 34.3 8.6 58 184-241 478-547 (592)
379 4a9v_A PHOX; hydrolase, beta-p 42.5 81 0.0028 33.2 8.8 61 226-287 477-549 (592)
380 3q6k_A 43.2 kDa salivary prote 39.9 2.9E+02 0.0099 27.3 26.9 167 447-616 124-341 (381)
381 3l6v_A GYRA, DNA gyrase subuni 35.3 3.3E+02 0.011 26.7 30.6 112 233-345 4-132 (370)
382 3kci_A Probable E3 ubiquitin-p 28.2 4.4E+02 0.015 25.9 30.6 242 95-346 54-346 (389)
383 2cn3_A Xyloglucanase, beta-1,4 27.9 6.3E+02 0.021 27.6 32.7 105 139-245 24-152 (737)
384 3mvd_K Regulator of chromosome 27.2 4.8E+02 0.016 26.0 30.6 99 24-122 82-207 (423)
385 2lkw_A Membrane fusion protein 25.6 28 0.00097 17.8 1.0 15 716-730 3-17 (26)
386 3mez_B Mannose-specific lectin 24.5 2.5E+02 0.0085 21.8 9.5 26 228-256 59-84 (113)
387 1zvt_A Topoisomerase IV subuni 24.2 4.2E+02 0.014 24.3 15.4 142 438-588 4-163 (256)
388 4d9s_A UVB-resistance protein 23.1 5.6E+02 0.019 25.4 36.5 263 23-297 22-355 (406)
389 4ftd_A Uncharacterized protein 22.8 5.9E+02 0.02 25.6 16.6 196 59-260 138-381 (453)
390 3hx6_A Type 4 fimbrial biogene 22.0 7E+02 0.024 26.1 15.7 175 326-507 85-286 (570)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-66 Score=577.86 Aligned_cols=562 Identities=21% Similarity=0.321 Sum_probs=471.6
Q ss_pred ccceeeeeecCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECC---eEEEEe
Q 004270 5 EPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVK 81 (764)
Q Consensus 5 ~p~r~~g~~~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~ 81 (764)
+..|.-|+ ++.|.-....++++++++++.|++|+|||. +++++..+.+|...|++++|+||+.++++++ .|++||
T Consensus 8 e~~~L~GH-~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 8 ERNRLEAH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp EEEEECCC-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeeEECCC-CCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 34455566 444433333489999999999999999995 6788888889999999999999988887753 399999
Q ss_pred c-CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe
Q 004270 82 R-AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS 158 (764)
Q Consensus 82 ~-~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~ 158 (764)
. ++.+..+.+|...|.+++| +|++|++++.|+.+++|+...... .....+...+....++|++ ..++.++
T Consensus 86 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~--~~~~~~~ 158 (577)
T 2ymu_A 86 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVWGVAFSPDG--QTIASAS 158 (577)
T ss_dssp TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE-----EEECCCSSCEEEEEECTTS--SCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccccee-----eeccCCCCceeeeeeecCC--ccceecc
Confidence 6 4567779999999999997 799999999999999999765443 4445566777788899999 7899999
Q ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
.++.+++|+. +.........|...|.+++++|++++|++++.||.|++||. +++.+..+..+ ...|.+++|+|+++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v~~~~~s~dg~- 234 (577)
T 2ymu_A 159 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSPDGQ- 234 (577)
T ss_dssp TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-SSCEEEEEECTTSS-
T ss_pred cccceecccc-ceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecC-CCCEEEEEECCCCC-
Confidence 9999999995 55667778889999999999999999999999999999995 57777777665 78999999999999
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (764)
+|++++.|+.|++||. +++.+..+. +|...|.+++|+|+++.+++++.|+.|++|+.+. ..+..+.+|...|.
T Consensus 235 ~l~~~~~d~~i~~w~~-~~~~~~~~~-~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-----~~~~~~~~h~~~v~ 307 (577)
T 2ymu_A 235 TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVW 307 (577)
T ss_dssp CEEEEETTSCEEEECT-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-----CEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEeC-CCCEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-----cEEEEEecCCCCeE
Confidence 8999999999999996 466677777 8999999999999999999999999999998543 46677789999999
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270 319 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (764)
Q Consensus 319 ~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (764)
+++|+|+++.+++++.|+++++|+...... ..+. ....++.++...+ +. ..++.+..
T Consensus 308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~-----------------~~~~~v~~~~~s~----~g-~~l~~~~~ 364 (577)
T 2ymu_A 308 GVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLT-----------------GHSSSVWGVAFSP----DG-QTIASASD 364 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEE-EEEC-----------------CCSSCEEEEEECT----TS-SEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEe-----------------CCCCCEEEEEECC----CC-CEEEEEeC
Confidence 999999999999999999999999754322 1111 0122344444332 23 34556678
Q ss_pred CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
++.+++|+...... .....|...+++++|+|+|+++++++.|+.|++|+. +++....+. +|...|+
T Consensus 365 dg~v~~~~~~~~~~-----~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~--------~~~~~v~ 430 (577)
T 2ymu_A 365 DKTVKLWNRNGQLL-----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVW 430 (577)
T ss_dssp TSEEEEEETTCCEE-----EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE--------CCSSCEE
T ss_pred CCEEEEEcCCCCEE-----EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec--------CCCCCeE
Confidence 89999999654322 223357789999999999999999999999999996 445555553 8999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC
Q 004270 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT 557 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~ 557 (764)
+++|+|++++|++++.|+.|++||.. ++.+..+.. ...+.+++|+|++++||+++.|+.|++||. ++++++.+.+|.
T Consensus 431 ~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~ 508 (577)
T 2ymu_A 431 GVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 508 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCC
Confidence 99999999999999999999999975 455555554 489999999999999999999999999995 688999999999
Q ss_pred CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 558 DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 558 ~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
..|++++|+|||++|++++.|+.|++||. +++++..+..|. .|++++|+|||++|++++.|+ +|++||
T Consensus 509 ~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~-~i~~Wd 577 (577)
T 2ymu_A 509 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK-TVKLWN 577 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-EEEEeC
Confidence 99999999999999999999999999995 688888888775 599999999999999999999 599997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-66 Score=577.41 Aligned_cols=562 Identities=14% Similarity=0.186 Sum_probs=456.1
Q ss_pred CCCcceEEe-cCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECC---eEEEEecC--c--eE
Q 004270 15 SSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKRA--H--QV 86 (764)
Q Consensus 15 ~~v~~~~~~-~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~~--~--~~ 86 (764)
.+.+.++.+ ++++++++++ ++++++||+.+++...++.+|...|++++|+|++.++|+|+ .|++||.. + ..
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 334444433 7888888876 78999999999888888889999999999999999998864 49999963 2 24
Q ss_pred EEecccccceEEEEE--eCCEEEEEecC----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC
Q 004270 87 ATWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE 160 (764)
Q Consensus 87 ~~~~~h~~~v~~l~~--~g~~l~s~~~d----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d 160 (764)
..+.+|.++|.+++| +|++|++++.+ +.|++||. ++. ...+..|...+..+.|+|++. ..|++|+.|
T Consensus 97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~----~~~l~gh~~~v~~v~f~p~~~-~~l~s~s~D 169 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTS----NGNLTGQARAMNSVDFKPSRP-FRIISGSDD 169 (611)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCB----CBCCCCCSSCEEEEEECSSSS-CEEEEEETT
T ss_pred EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCC----cceecCCCCCceEEEECCCCC-eEEEEEeCC
Confidence 558999999999998 68999998865 36777773 444 456677888899999999983 369999999
Q ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec------cCCCCEEEEEEee
Q 004270 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH------SMRGAVTALAFSS 234 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~l~fs~ 234 (764)
++|++||..+++++..+.+|...|.+++|+|++++||+|+.|++|++||+.+++.+..+.. .|.+.|.+++|+|
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999998888753 5689999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeecc--cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccC
Q 004270 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG 312 (764)
Q Consensus 235 d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 312 (764)
+|+ +|++++.|++|++||+.+++.+..+..+ +...+..+.| ++..+++++.|+.+++|+.... .....+.+
T Consensus 250 dg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~----~~~~~~~g 322 (611)
T 1nr0_A 250 DGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG----SIDQVRYG 322 (611)
T ss_dssp TSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT----EEEEEECC
T ss_pred CCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC----CcceEEcC
Confidence 999 9999999999999999999988877622 3345566666 6788999999999999987654 46677789
Q ss_pred CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (764)
Q Consensus 313 h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (764)
|...|.+++|+|+|++|++++.|++|++||+.++.....+.. .....+.++.... ...
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~----------------~h~~~v~~~~~s~------~~~ 380 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD----------------VHATMITGIKTTS------KGD 380 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC----------------SCSSCEEEEEECT------TSC
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc----------------CCcceEEEEEECC------CCc
Confidence 999999999999999999999999999999987654433211 1123344444431 123
Q ss_pred eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccc
Q 004270 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472 (764)
Q Consensus 393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 472 (764)
+.....++.+++|+............ ..........++++|+|+.++++ .++.+.+|+. +. ...+ .
T Consensus 381 l~s~s~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~--~~-~~~~---------~ 446 (611)
T 1nr0_A 381 LFTVSWDDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSH--GK-LTEV---------P 446 (611)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCC-EEECSSCEEEEEECTTSSCEEEE-ESSEEEEEET--TE-EEEE---------E
T ss_pred EEEEEcCCceEEeecCCcccccccee-eeecCCCCcEEEEeCCCcEEEEE-eCceEEEEeC--Cc-eeee---------e
Confidence 44566788999999876433211000 00112456789999999888877 5678999983 32 2222 4
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCe--eeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC-CeE
Q 004270 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRM 549 (764)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~-~~~ 549 (764)
|...+.+++|+|++++|++++.|++|++||+.++.. .....+...|.+++|+|++++|++++.|++|++||+.+ +++
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence 778899999999999999999999999999987654 23445668999999999999999999999999999988 666
Q ss_pred EEE--eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc-eE-EEEeeC--CceEEEEEcCCCCeEEEEEeCCCeE
Q 004270 550 VRK--FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR-QI-DAIHVD--VSITALSLSPNMDVLATAHVDQNGV 623 (764)
Q Consensus 550 ~~~--~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~-~~-~~~~~~--~~v~~l~~sp~g~~lat~~~d~~~i 623 (764)
+.. +.+|...|++++|+|||++|++++.|++|++||+.++. .+ ..+..| ..|++++|+|++. |++++.|+ +|
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~-~i 604 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS-NI 604 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS-CE
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCC-CE
Confidence 544 34599999999999999999999999999999999875 33 455555 4599999999998 99999999 69
Q ss_pred EEEecc
Q 004270 624 YLWVNR 629 (764)
Q Consensus 624 ~lW~~~ 629 (764)
++|+++
T Consensus 605 ~lW~~~ 610 (611)
T 1nr0_A 605 KFWNVP 610 (611)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.2e-61 Score=534.32 Aligned_cols=521 Identities=21% Similarity=0.325 Sum_probs=441.5
Q ss_pred EecCCCCcceEEEEEeCCeEEEEECC---eEEEEec-CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCC
Q 004270 50 LVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR-AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGI 123 (764)
Q Consensus 50 ~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~-~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~ 123 (764)
..+.+|...|+|++|+||+.++|+++ .|++||. ++.+.++.+|.+.|++++| +|++|++++.|++|+|||+. +
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~ 88 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G 88 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-C
Confidence 44678999999999999999888754 3999996 4567779999999999997 79999999999999999964 4
Q ss_pred cccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCC
Q 004270 124 EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG 203 (764)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg 203 (764)
+. +..+..+...+..++|+|++ +.|++++.|+.+++|+.. ........+|...|.++.++|++..+++++.++
T Consensus 89 ~~----~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 89 QL----LQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp CE----EEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CE----EEEEECCCCCEEEEEECCCC--CEEEEEcCCCceeecccc-cceeeeccCCCCceeeeeeecCCccceeccccc
Confidence 44 56777888888999999999 899999999999999964 556677888999999999999999999999999
Q ss_pred eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE
Q 004270 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (764)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 283 (764)
.+++|+... ........ +...|.+++|+|+++ ++++++.|+.|++||. +++.+..+. +|...|.+++|+|++++|
T Consensus 162 ~~~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~v~~w~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l 236 (577)
T 2ymu_A 162 TVKLWNRNG-QLLQTLTG-HSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTI 236 (577)
T ss_dssp EEEEECTTS-CEEEEEEC-CSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCE
T ss_pred ceeccccce-eeeeeccC-CCcceeeeeecCCCC-EEEEEcCCCEEEEEeC-CCcEEEEEe-cCCCCEEEEEECCCCCEE
Confidence 999998653 44444444 478999999999999 8999999999999995 567777777 899999999999999999
Q ss_pred EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (764)
++++.|+.|++|+.+. +.+..+.+|...|.+++|+|+++.+++++.|+.+++|+... +....+.
T Consensus 237 ~~~~~d~~i~~w~~~~-----~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~---------- 300 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNG-----QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLT---------- 300 (577)
T ss_dssp EEEETTSCEEEECTTS-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC----------
T ss_pred EEEeCCCEEEEEeCCC-----CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEe----------
Confidence 9999999999997532 46777889999999999999999999999999999999642 2222111
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
....++.++...+ +. ..+..+..++.+++|+...... .....+...+.+++++|+|+++++|+
T Consensus 301 -------~h~~~v~~~~~~~----~~-~~l~t~~~d~~i~~w~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 301 -------GHSSSVWGVAFSP----DG-QTIASASDDKTVKLWNRNGQHL-----QTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp -------CCSSCEEEEEECT----TS-SEEEEEETTSCEEEEETTSCEE-----EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -------cCCCCeEEEEECC----CC-CEEEEEeCCCeEEEEeCCCCee-----EEEeCCCCCEEEEEECCCCCEEEEEe
Confidence 1123444444432 22 3455567789999999876543 22346778999999999999999999
Q ss_pred cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEE
Q 004270 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIV 522 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~ 522 (764)
.+|.+++|+. ++.....+. +|...|++++|+|++++|++++.|+.|++||. +++.+..+..+ ..|.+++
T Consensus 364 ~dg~v~~~~~-~~~~~~~~~--------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 364 DDKTVKLWNR-NGQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA 433 (577)
T ss_dssp TTSEEEEEET-TCCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEEcC-CCCEEEEec--------CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEE
Confidence 9999999996 455555553 89999999999999999999999999999996 45666666544 8999999
Q ss_pred EeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ce
Q 004270 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SI 601 (764)
Q Consensus 523 ~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v 601 (764)
|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||. +++++..+..|. .|
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence 9999999999999999999996 56788899999999999999999999999999999999995 688888888765 59
Q ss_pred EEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 602 TALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 602 ~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
++++|+|||++||+++.|+ .|++|+..
T Consensus 512 ~~l~~s~dg~~l~s~~~dg-~v~lwd~~ 538 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDK-TVKLWNRN 538 (577)
T ss_dssp EEEEECTTSSCEEEEETTS-EEEEECTT
T ss_pred EEEEEcCCCCEEEEEECcC-EEEEEeCC
Confidence 9999999999999999998 69999953
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-61 Score=540.59 Aligned_cols=514 Identities=15% Similarity=0.171 Sum_probs=420.4
Q ss_pred ecCCeEEEEEEeCCeEEEEecCCC--eEEEecCCCCcceEEEEEeCCeEEEEECC-------eEEEEecCceEEEecccc
Q 004270 23 RLGTENFVTVSVGKAFHIYNCAKL--NLVLVGPQLPKKIRALASYRDYTFAAYGN-------HIAVVKRAHQVATWSRHS 93 (764)
Q Consensus 23 ~~~~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~I~~~~~~~~~~~~a~g~-------~i~vw~~~~~~~~~~~h~ 93 (764)
.++++++++++.|++++|||+.++ .+.....+|.++|.+++|+|++.++++++ .|++|+.++.+..+.+|.
T Consensus 68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~ 147 (611)
T 1nr0_A 68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 147 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCC
Confidence 389999999999999999999753 34556678999999999999988776532 499999888888899999
Q ss_pred cceEEEEE--eCC-EEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC
Q 004270 94 AKVNLLLL--FGE-HILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST 170 (764)
Q Consensus 94 ~~v~~l~~--~g~-~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~ 170 (764)
..|.+++| ++. .|++++.|++|++||..+++. ...+..|...+..++|+|++ +.|++|+.|++|++||+.+
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~----~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----EEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTT
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE----eeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCC
Confidence 99999998 454 699999999999999888766 66778888999999999999 8999999999999999999
Q ss_pred CeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC--CCCEEEEEEeeCCCCEEE
Q 004270 171 KKKLYEFK-------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLLA 241 (764)
Q Consensus 171 ~~~~~~~~-------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~fs~d~~~~l~ 241 (764)
++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+..+. ...+..+.| ++. .++
T Consensus 222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~ 298 (611)
T 1nr0_A 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ-ALV 298 (611)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSS-CEE
T ss_pred CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCC-EEE
Confidence 99999884 799999999999999999999999999999999999988887532 235566666 566 789
Q ss_pred EEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec-cCCCCCCeeE
Q 004270 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-SGHSAPPLCI 320 (764)
Q Consensus 242 sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-~~h~~~v~~i 320 (764)
+++.||.+++||...++....+. +|...|.+++|+|++++|++++.|++|++||+... .....+ .+|...|.++
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~-gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----~~~~~~~~~h~~~v~~~ 373 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSADAEGHINSWDISTG----ISNRVFPDVHATMITGI 373 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEECSSCSCSSCEEEE
T ss_pred EEeCCCcEEEEeCCCCCcceEEc-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceeeecccCCcceEEEE
Confidence 99999999999999998777777 99999999999999999999999999999998765 233333 5799999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
+|++++ .+++++.|+++++|++............ ..+. .....+.. ..+...++.. .+.
T Consensus 374 ~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~----s~dg~~~~~~--~~~ 432 (611)
T 1nr0_A 374 KTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVA-------------NKLS-SQPLGLAV----SADGDIAVAA--CYK 432 (611)
T ss_dssp EECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCE-------------EECS-SCEEEEEE----CTTSSCEEEE--ESS
T ss_pred EECCCC-cEEEEEcCCceEEeecCCccccccceee-------------eecC-CCCcEEEE----eCCCcEEEEE--eCc
Confidence 999765 6889999999999998764332110000 0000 01111111 1233333333 346
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 480 (764)
.+++|+... .. .+ .+...+.+++|+|+|+++++|+.||.|++|++.++....... .+|...|+++
T Consensus 433 ~v~~~~~~~--~~--~~----~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-------~~h~~~v~~v 497 (611)
T 1nr0_A 433 HIAIYSHGK--LT--EV----PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-------IVHPAEITSV 497 (611)
T ss_dssp EEEEEETTE--EE--EE----ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-------EECSSCEEEE
T ss_pred eEEEEeCCc--ee--ee----ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-------cCCCCceEEE
Confidence 788887332 11 11 145779999999999999999999999999998764321111 2799999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCC-CCeeee--Ee-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCe-EE-EEee
Q 004270 481 ACDSTNTLMISAGYHGDIKVWDFKG-RDLKSR--WE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-MV-RKFE 554 (764)
Q Consensus 481 ~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~--~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~-~~-~~~~ 554 (764)
+|+|++++|++++.|++|++|++.+ +++... +. +...|.+++|+||+++||+|+.|++|++||+.++. .+ ..+.
T Consensus 498 ~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~ 577 (611)
T 1nr0_A 498 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred EECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc
Confidence 9999999999999999999999987 555443 33 55899999999999999999999999999998765 33 6778
Q ss_pred cC-CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 555 GH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 555 ~h-~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
+| ...|++++|+||++ |++++.|++|++|+++
T Consensus 578 ~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 578 AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 99 89999999999998 9999999999999974
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-59 Score=528.35 Aligned_cols=534 Identities=14% Similarity=0.139 Sum_probs=462.0
Q ss_pred cCCeEEEEEEeCCeEEEEecCCC----eEEEecCCCCcc-eEEEEEeC--CeEEEEECC---eEEEEecC----------
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKL----NLVLVGPQLPKK-IRALASYR--DYTFAAYGN---HIAVVKRA---------- 83 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~-I~~~~~~~--~~~~~a~g~---~i~vw~~~---------- 83 (764)
++++++++++ ++.+++||+.++ +.+....+|... |++++|+| ++.+++++. .|++|+..
T Consensus 28 pdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~ 106 (615)
T 1pgu_A 28 PTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 106 (615)
T ss_dssp TTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE
T ss_pred CCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccc
Confidence 8888888888 899999999999 888888899999 99999999 988887753 49999973
Q ss_pred ceEEEecccccceEEEEE--eCCEEEEEecC----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEE
Q 004270 84 HQVATWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG 157 (764)
Q Consensus 84 ~~~~~~~~h~~~v~~l~~--~g~~l~s~~~d----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~ 157 (764)
+.+..+.+|...|.++++ +|++|++++.+ +.|.+|| .++. +..+..+...+..+.|+|++. ..++++
T Consensus 107 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~----~~~~~~~~~~v~~~~~~~~~~-~~l~~~ 179 (615)
T 1pgu_A 107 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNS----LGEVSGHSQRINACHLKQSRP-MRSMTV 179 (615)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCE----EEECCSCSSCEEEEEECSSSS-CEEEEE
T ss_pred cccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCc----ceeeecCCccEEEEEECCCCC-cEEEEE
Confidence 335558899999999997 78999999987 6788888 3444 566777888889999999982 279999
Q ss_pred eCCCcEEEEeCCCCeEEEEEcCCCC---CeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCceEEEEec---cCCCCEEEE
Q 004270 158 SQEGSLQLWNISTKKKLYEFKGWGS---SISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTH---SMRGAVTAL 230 (764)
Q Consensus 158 ~~dg~i~iwd~~~~~~~~~~~~h~~---~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~l 230 (764)
+.||.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+..+.. .|...|.++
T Consensus 180 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~ 259 (615)
T 1pgu_A 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259 (615)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEE
Confidence 9999999999999999999999999 9999999999 99999999999999999999999998843 568999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc----ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 306 (764)
+|+ ++. +|++++.||.|++||+++++.+..+. .+ ...+.++.|. ++.++++++.|+.|++|++... ..
T Consensus 260 ~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~----~~ 331 (615)
T 1pgu_A 260 SWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD----EV 331 (615)
T ss_dssp EES-SSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE----EE
T ss_pred EEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC----cE
Confidence 999 888 99999999999999999999888887 44 4678888886 8889999999999999998764 67
Q ss_pred eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270 307 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (764)
Q Consensus 307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (764)
+..+.+|...|.+++| |+ +++++.||.+++|++.. .. .....++.++...
T Consensus 332 ~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~---~~-------------------~~~~~~v~~~~~~---- 381 (615)
T 1pgu_A 332 LKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSS---MH-------------------QDHSNLIVSLDNS---- 381 (615)
T ss_dssp EEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTE---EE-------------------CCCCSCEEEEECC----
T ss_pred EEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchh---hc-------------------CcccCceEEEEEC----
Confidence 7788899999999999 88 99999999999999760 00 1122345555541
Q ss_pred ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466 (764)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~ 466 (764)
+ ...+..+..++.+++|++...... ..+.+++++|+|.+++++ .++.+.+|++.+++....+
T Consensus 382 -~-~~~l~~~~~d~~i~~~~~~~~~~~-----------~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---- 443 (615)
T 1pgu_A 382 -K-AQEYSSISWDDTLKVNGITKHEFG-----------SQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV---- 443 (615)
T ss_dssp -S-TTCCEEEETTTEEEETTEEEEECS-----------SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE----
T ss_pred -C-CcEEEEEeCCCCEEEEEcccCccc-----------CCceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeec----
Confidence 1 235666778899999998876542 267899999999888887 8899999999888887766
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCCee-eeE-ecCcceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270 467 ERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLK-SRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~-~~~-~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d 543 (764)
.|...+.+++++ ++++++++. |+.|++||+.+++.. ..+ .+...|.+++|+|++++|++++.|+.|++||
T Consensus 444 -----~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 516 (615)
T 1pgu_A 444 -----RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD 516 (615)
T ss_dssp -----ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -----ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence 578899999999 889999999 999999999987764 333 3448999999999999999999999999999
Q ss_pred ccCCeEEEEeec-CCCCeeEEEEcC----------CCcEEEEEeCCCcEEEEEcCcc-ceEEEEeeCC-ceEEEEEcCCC
Q 004270 544 VVALRMVRKFEG-HTDRITDFCFSE----------DGKWLLSSGMDGSLRIWDVILA-RQIDAIHVDV-SITALSLSPNM 610 (764)
Q Consensus 544 ~~~~~~~~~~~~-h~~~i~~l~~s~----------dg~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~-~v~~l~~sp~g 610 (764)
+.+++.+..+.+ |...|++++|+| ++++|++++.||.|++||+.++ +++..+..|. .|++++|+|++
T Consensus 517 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 596 (615)
T ss_dssp TTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred CCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC
Confidence 999999999998 999999999999 9999999999999999999998 7888887665 59999999999
Q ss_pred CeEEEEEeCCCeEEEEeccc
Q 004270 611 DVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 611 ~~lat~~~d~~~i~lW~~~~ 630 (764)
. |++++.|+ .|++|+++.
T Consensus 597 ~-l~s~~~d~-~v~iw~~~~ 614 (615)
T 1pgu_A 597 T-LVSSGADA-CIKRWNVVL 614 (615)
T ss_dssp E-EEEEETTS-CEEEEEEC-
T ss_pred C-eEEecCCc-eEEEEeeec
Confidence 9 99999999 599999863
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.3e-60 Score=572.95 Aligned_cols=559 Identities=17% Similarity=0.230 Sum_probs=479.1
Q ss_pred ecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECC---eEEEEec--CceEEEecccccceE
Q 004270 23 RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVN 97 (764)
Q Consensus 23 ~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~h~~~v~ 97 (764)
.++++++++++.|++|++||+.+++.+....+|...|.+++|+|++.++++++ .|++||. ++.+..+.+|...|.
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~ 703 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN 703 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence 38899999999999999999999999999999999999999999987777643 4999996 566778999999999
Q ss_pred EEEE----eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004270 98 LLLL----FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (764)
Q Consensus 98 ~l~~----~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~ 173 (764)
++.+ ++..+++++.||.|++||+.+++. ...+..|...+..++|+|++ +.+++++.||.|++||+.+++.
T Consensus 704 ~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 704 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDD--ELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEEECSSSSCCEEEEEETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSST--TEEEEEESSSEEEEEEGGGTEE
T ss_pred EEEEecCCCceEEEEEeCCCeEEEEECCCcch----hheecCCCCCEEEEEEecCC--CEEEEEECCCeEEEEeCCCCcc
Confidence 9998 356899999999999999999887 67777888889999999999 8999999999999999999988
Q ss_pred EEEEcC-------------CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270 174 LYEFKG-------------WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240 (764)
Q Consensus 174 ~~~~~~-------------h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l 240 (764)
...+.. +...+.+++|+|+++.+++++ ++.+.+||+.++..+..+...|...|.+++|+|++. ++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 855 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LA 855 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EE
Confidence 877643 234788999999999999987 689999999999999999877789999999999999 99
Q ss_pred EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc----------------
Q 004270 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------------- 304 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~---------------- 304 (764)
++++.+|.|++||+.++.....+. +|.+.|.+++|+|+++.|++++.|+.|++|++.......
T Consensus 856 ~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp EEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred EEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 999999999999999999998888 999999999999999999999999999999975311000
Q ss_pred ------------eee-----EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270 305 ------------RLL-----RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (764)
Q Consensus 305 ------------~~~-----~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (764)
... .....+...+.+++|+|+++++++++.+|.+++|++.++.....+..
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~------------- 1001 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG------------- 1001 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC-------------
T ss_pred cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc-------------
Confidence 000 00012356789999999999999999999999999987655443321
Q ss_pred hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 004270 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 447 (764)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~ 447 (764)
...++.++...+ +. ..+..+..++.+++|++.+.... ....+...+.++++++++ .+++++.+|.
T Consensus 1002 ----h~~~v~~l~~s~----dg-~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 1066 (1249)
T 3sfz_A 1002 ----HKKAVRHIQFTA----DG-KTLISSSEDSVIQVWNWQTGDYV-----FLQAHQETVKDFRLLQDS-RLLSWSFDGT 1066 (1249)
T ss_dssp ----CSSCCCCEEECS----SS-SCEEEECSSSBEEEEETTTTEEE-----CCBCCSSCEEEEEECSSS-EEEEEESSSE
T ss_pred ----CCCceEEEEECC----CC-CEEEEEcCCCEEEEEECCCCceE-----EEecCCCcEEEEEEcCCC-cEEEEECCCc
Confidence 122344444332 23 34555667899999999876542 233677899999999965 5788899999
Q ss_pred EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeec
Q 004270 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV 526 (764)
Q Consensus 448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~ 526 (764)
|++||+.++.....+. +|.+.|.+++|+|+++++++++.||.|++||+.+++.+..+..+ ..|++++|+|+
T Consensus 1067 v~vwd~~~~~~~~~~~--------~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d 1138 (1249)
T 3sfz_A 1067 VKVWNVITGRIERDFT--------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138 (1249)
T ss_dssp EEEEETTTTCCCEEEE--------CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSS
T ss_pred EEEEECCCCceeEEEc--------ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCC
Confidence 9999999999888775 89999999999999999999999999999999999988888765 78999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEe---------ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270 527 NGLLATVADDLVIRLFDVVALRMVRKF---------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597 (764)
Q Consensus 527 ~~~la~~~~d~~i~v~d~~~~~~~~~~---------~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 597 (764)
+++|++++.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++ |.|++||+.+++.+..+..
T Consensus 1139 g~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~ 1216 (1249)
T 3sfz_A 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT 1216 (1249)
T ss_dssp SSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec
Confidence 999999999999999999999877665 67999999999999999999886 8999999999999988875
Q ss_pred CC-ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 598 DV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 598 ~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
+. .|++++|+|||.+|++++.|+ .|++|++.
T Consensus 1217 ~~~~i~~~~~s~dg~~l~~~~~dg-~v~vw~l~ 1248 (1249)
T 3sfz_A 1217 NGTNLKKIHVSPDFRTYVTVDNLG-ILYILQVL 1248 (1249)
T ss_dssp SSCCCCCCEECSSSCCEEEECTTC-CEEEECCC
T ss_pred cCCcccEEEECCCCCEEEEecCCc-EEEEEeec
Confidence 55 599999999999999999999 59999863
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-57 Score=553.65 Aligned_cols=530 Identities=17% Similarity=0.219 Sum_probs=454.2
Q ss_pred EecCCCCcceEEEEEeCCeEEEEECC---eEEEEec--CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccC
Q 004270 50 LVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKG 122 (764)
Q Consensus 50 ~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~ 122 (764)
....+|.+.|++++|+|++.++++|+ .|++|+. ++.+..+.+|...|.++++ +|++|++++.||+|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 34568999999999999998888754 3999996 5567779999999999998 689999999999999999999
Q ss_pred CcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC
Q 004270 123 IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD 202 (764)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d 202 (764)
++. +..+..+...+..+.|+|++....+++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.|
T Consensus 689 ~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 689 GKL----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp CCE----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred Cce----EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 887 7788888888999999997654789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCceEEEEecc------------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC
Q 004270 203 GKIHVHNVRYDEELVTFTHS------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270 (764)
Q Consensus 203 g~i~iwd~~~~~~~~~~~~~------------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~ 270 (764)
|.|++||+.+++....+... ....+.+++|+|+|+ .+++++ ++.+.+||+.++.....+..+|...
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~ 842 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-KIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST 842 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-EEEEEE-TTEEEEEETTTCCEEEEEECSSSSC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCceeEEcCCCCCc
Confidence 99999999999887776532 123788999999999 777776 7899999999999888888789999
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 271 v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
|.+++|+|+++++++++.|+.|++|+++.. ..+..+.+|...|.+++|+|+++++++++.|+.+++|++.......
T Consensus 843 v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~ 918 (1249)
T 3sfz_A 843 IQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918 (1249)
T ss_dssp CCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCC
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceee
Confidence 999999999999999999999999998765 6777888999999999999999999999999999999986543222
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
..... ..... ........+........+.++......... .....+.++
T Consensus 919 ~~~~~-------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~ 967 (1249)
T 3sfz_A 919 AIVLK-------------------QEIDV-----VFQENETMVLAVDNIRGLQLIAGKTGQIDY-------LPEAQVSCC 967 (1249)
T ss_dssp SSSEE-------------------EEEEE-----EEETTEEEEEEEESSSSEEEEEESSCCEEE-------ECCSCEEEE
T ss_pred eeccc-------------------ceeeE-----EEcCCCcEEEEecCCcceEEEecCcceEEE-------cccCcEEEE
Confidence 21100 00000 000111223333444555555544433211 123679999
Q ss_pred EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (764)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 510 (764)
+++|+|+++++|+.+|.|.+|++.++.....+. +|...|++++|+|+++++++++.||.|++||+.+++...
T Consensus 968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~--------~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--------GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp EECTTSSEEEEEETTSCCEEEETTTTSCEEECC--------CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc--------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 999999999999999999999999998877664 899999999999999999999999999999999998887
Q ss_pred eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 590 (764)
...+...+.++++++++ .+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++++.|++|++||+.+++
T Consensus 1040 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1040 LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc
Confidence 77777999999999955 57888999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCc-eEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 591 QIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 591 ~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
++..+..|.. |++++|+|+|++||+++.|+ .|++|++..
T Consensus 1119 ~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg-~i~vwd~~~ 1158 (1249)
T 3sfz_A 1119 PLHELKGHNGCVRCSAFSLDGILLATGDDNG-EIRIWNVSD 1158 (1249)
T ss_dssp CSBCCCCCSSCEEEEEECSSSSEEEEEETTS-CCCEEESSS
T ss_pred eeeeeccCCCcEEEEEECCCCCEEEEEeCCC-EEEEEECCC
Confidence 9988887654 99999999999999999999 599999864
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.9e-56 Score=497.49 Aligned_cols=496 Identities=15% Similarity=0.185 Sum_probs=428.9
Q ss_pred ec--CCeEEEEEEeCCeEEEEecCCC--------eEEEecCCCCcceEEEEEeCCeEEEEEC-------CeEEEEecCce
Q 004270 23 RL--GTENFVTVSVGKAFHIYNCAKL--------NLVLVGPQLPKKIRALASYRDYTFAAYG-------NHIAVVKRAHQ 85 (764)
Q Consensus 23 ~~--~~~~~~~~~~~~~i~iwd~~~~--------~~~~~~~~~~~~I~~~~~~~~~~~~a~g-------~~i~vw~~~~~ 85 (764)
.+ +++++++++.|+++++||+.++ .++.....|...|.+++|+|++.+++++ ..|++|+.++.
T Consensus 73 sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~ 152 (615)
T 1pgu_A 73 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS 152 (615)
T ss_dssp CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCc
Confidence 37 8899999999999999999854 6777777899999999999998776653 25999998888
Q ss_pred EEEecccccceEEEEE--eCC-EEEEEecCCcEEEEEccCCcccccceeeEecCCc---cccEEEEeCC-CCCCEEEEEe
Q 004270 86 VATWSRHSAKVNLLLL--FGE-HILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK---FTPTCIMHPD-TYLNKVIVGS 158 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~~--~g~-~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~l~~~~ 158 (764)
+..+.+|...|.++.+ +++ .|++++.||.|++||+.+++. +..+..+.. .+..++|+|+ + +.+++++
T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~ 226 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF----SASDRTHHKQGSFVRDVEFSPDSG--EFVITVG 226 (615)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE----EEEECSSSCTTCCEEEEEECSTTC--CEEEEEE
T ss_pred ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce----eeeecccCCCCceEEEEEECCCCC--CEEEEEe
Confidence 9999999999999998 455 899999999999999988877 667777777 7888999999 8 7999999
Q ss_pred CCCcEEEEeCCCCeEEEEE-c---CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc---CCCCEEEEE
Q 004270 159 QEGSLQLWNISTKKKLYEF-K---GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS---MRGAVTALA 231 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~-~---~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~l~ 231 (764)
.||.|++||+.+++.+..+ . .|...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+ ....+.++.
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 9999999999999999999 6 899999999999 9999999999999999999999999888764 236788999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 311 (764)
|. ++. ++++++.+|.|++||+.+++.+..+. +|...|.+++| |+ +++++.|+.|++|++. .+. .
T Consensus 306 ~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------~~~--~ 369 (615)
T 1pgu_A 306 AT-GNG-RIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV-NP---LISGSYDGRIMEWSSS-------SMH--Q 369 (615)
T ss_dssp EE-ETT-EEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET-TT---TEEEETTSCEEETTTT-------EEE--C
T ss_pred eC-CCC-eEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------hhc--C
Confidence 86 666 89999999999999999999988888 89999999999 88 9999999999999765 233 7
Q ss_pred CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (764)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
+|...|.+++| +++..+++++.|+.+++|++....... +...+.. ..+..
T Consensus 370 ~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~------------------------~~~~~~~----s~~~~- 419 (615)
T 1pgu_A 370 DHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS------------------------QPKVASA----NNDGF- 419 (615)
T ss_dssp CCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS------------------------CEEEEEE----CSSSE-
T ss_pred cccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC------------------------CceEEEE----cCCCC-
Confidence 89999999999 667899999999999999997754332 1112222 12222
Q ss_pred eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCccc-ceecCccccc
Q 004270 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISR-GSYLDMSERS 469 (764)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~-~~~~~~~~~~ 469 (764)
++..+ ....+.+|+.......... .+...+.+++++ ++++++++. +|.|++|++.++... ..+
T Consensus 420 ~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~------- 484 (615)
T 1pgu_A 420 TAVLT-NDDDLLILQSFTGDIIKSV-----RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLK------- 484 (615)
T ss_dssp EEEEE-TTSEEEEEETTTCCEEEEE-----ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECS-------
T ss_pred EEEEe-CCCceEEEeccCCceeeec-----ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccccc-------
Confidence 22233 7888999998665442222 145789999999 999999999 999999999987654 222
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe--cCcceEEEEEee----------cCCEEEEEeCCC
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHR----------VNGLLATVADDL 537 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~i~~~~~s~----------~~~~la~~~~d~ 537 (764)
..|...|++++|+|++++|++++.||.|++||+.+++.+..+. +...|++++|+| ++++||+++.|+
T Consensus 485 -~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 485 -TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp -SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred -CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence 4899999999999999999999999999999999999988877 558999999999 999999999999
Q ss_pred eEEEEEccCC-eEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 538 VIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 538 ~i~v~d~~~~-~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
.|++||+.++ +.+..+.+|...|++++|+||++ |++++.||+|++|++..
T Consensus 564 ~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 564 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999998 88999999999999999999999 99999999999999875
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-54 Score=500.43 Aligned_cols=542 Identities=11% Similarity=0.075 Sum_probs=410.3
Q ss_pred ecCCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEEC---CeEEEEec--CceEEEecccccceE
Q 004270 23 RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYG---NHIAVVKR--AHQVATWSRHSAKVN 97 (764)
Q Consensus 23 ~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g---~~i~vw~~--~~~~~~~~~h~~~v~ 97 (764)
.++++++++++.|++|+|||..+.+.+... .|..+|.+++|+| +.+++++ +.|++||. ++.+..+. |...|+
T Consensus 26 spdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~ 102 (902)
T 2oaj_A 26 DFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKIT 102 (902)
T ss_dssp ETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEE
Confidence 388999999999999999999998887765 4788999999999 5454443 34999996 44566665 778999
Q ss_pred EEEE--eCCEEEEEecCCcEEEEEccCCcccccce-------eeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC
Q 004270 98 LLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV-------GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI 168 (764)
Q Consensus 98 ~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~ 168 (764)
++++ ++++|++++.||+|++||+.+++.....+ .....|...+..++|+|++. +.+++|+.||.| +||+
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~-~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI-GTVLISYEYVTL-TYSL 180 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE-EEEEEECSSCEE-EEET
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC-CEEEEEeCCCcE-EEEC
Confidence 9997 79999999999999999999876521001 22345677889999999642 589999999999 9999
Q ss_pred CCCeEEEEEcCC------------------CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-----c---
Q 004270 169 STKKKLYEFKGW------------------GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-----S--- 222 (764)
Q Consensus 169 ~~~~~~~~~~~h------------------~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-----~--- 222 (764)
++++.+..+..| ...|.+++|+|+|++||+|+.||.|++||+++++.+..... +
T Consensus 181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~ 260 (902)
T 2oaj_A 181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 260 (902)
T ss_dssp TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC
T ss_pred CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC
Confidence 999999998876 57899999999999999999999999999999987764221 1
Q ss_pred ---------CCCCEEEEEEee----CCCCEEEEEeCC-----CcEEEEECC------------------Cceeeeeeecc
Q 004270 223 ---------MRGAVTALAFSS----DGQPLLASGASS-----GVISIWNLE------------------KRRLQSVIREA 266 (764)
Q Consensus 223 ---------~~~~v~~l~fs~----d~~~~l~sg~~d-----g~i~iwd~~------------------~~~~~~~~~~~ 266 (764)
+...|++++|++ ++..+|++|+.+ +.+.+|++. +.+....+...
T Consensus 261 ~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 340 (902)
T 2oaj_A 261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP 340 (902)
T ss_dssp TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS
T ss_pred CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC
Confidence 245799999965 433478888765 379999852 22223333324
Q ss_pred cccCeeEEEEec----------CCCEEEEEcCCCcEEEEEecCCCCCce-------------------------------
Q 004270 267 HDNAIISLHFFA----------NEPVLMSASADNSIKMWIFDTTDGDPR------------------------------- 305 (764)
Q Consensus 267 h~~~v~~l~~~~----------~~~~l~s~~~d~~i~vw~~~~~~~~~~------------------------------- 305 (764)
|.+.|.++.+.+ +...+++++.|+.|++|++..+.....
T Consensus 341 ~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 341 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 677888998866 234788889999999999853310000
Q ss_pred ------eeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270 306 ------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379 (764)
Q Consensus 306 ------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (764)
....+.+|...+.+++|+|+++.|++|+.|++|++||+..+..... . +...
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-~----------------------~~~~ 477 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-A----------------------SFEV 477 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-B----------------------CEEE
T ss_pred HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC-c----------------------eEEe
Confidence 0012356666777778889999999999999999999876632100 0 0000
Q ss_pred eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 459 (764)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~ 459 (764)
++. . ....+|...|.+++|+|+|++|++|+.||+|++|++.+++..
T Consensus 478 --------------------------~l~------~--~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 478 --------------------------NLS------R--TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp --------------------------EHH------H--HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred --------------------------ech------h--hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 000 0 001256689999999999999999999999999999877321
Q ss_pred ce-----------------ec--------------------CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 460 GS-----------------YL--------------------DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 460 ~~-----------------~~--------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
.. +. ......+.+|.+.|++++|+|+| +||+|+.|++|++||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 00 00 00011235799999999999999 999999999999999
Q ss_pred CCCCCeeee-----E--ecCcceEEEEEe-----ecC---CEEEEEeCCCeEEEEEc---cCCeEEEEeecCC-----CC
Q 004270 503 FKGRDLKSR-----W--EVGCSLVKIVYH-----RVN---GLLATVADDLVIRLFDV---VALRMVRKFEGHT-----DR 559 (764)
Q Consensus 503 ~~~~~~~~~-----~--~~~~~i~~~~~s-----~~~---~~la~~~~d~~i~v~d~---~~~~~~~~~~~h~-----~~ 559 (764)
+.++..+.. + .+...|++++|+ ||| .+|++|+.|++|++||+ .+|+....+.+|. ++
T Consensus 603 ~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~ 682 (902)
T 2oaj_A 603 RRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGP 682 (902)
T ss_dssp TTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCC
T ss_pred CCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCc
Confidence 988776542 2 233779999999 875 89999999999999999 8899988888874 77
Q ss_pred eeEEE-Ec----------------------CCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEE---E------E
Q 004270 560 ITDFC-FS----------------------EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITAL---S------L 606 (764)
Q Consensus 560 i~~l~-~s----------------------~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l---~------~ 606 (764)
|..++ |+ ++|..|+++ +..||||++.++++......+. .+.++ . |
T Consensus 683 v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~ 760 (902)
T 2oaj_A 683 IHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNND 760 (902)
T ss_dssp CCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSC
T ss_pred eEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccceeeeEEEEEEecccccc
Confidence 88777 66 566555544 7789999999999987764333 25555 5 7
Q ss_pred cCCCCeEEEEEeCCCeEEEEeccc
Q 004270 607 SPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 607 sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
+++|..|++.+.|+ .|++|++..
T Consensus 761 ~~~~~~l~~~~~~g-~i~~~s~p~ 783 (902)
T 2oaj_A 761 RKNLTVIITLEING-HLRVFTIPD 783 (902)
T ss_dssp EEEEEEEEEEETTS-EEEEEETTT
T ss_pred ccCceEEEEEeCCC-cEEEEECcc
Confidence 89999999999999 699999854
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-54 Score=499.14 Aligned_cols=537 Identities=12% Similarity=0.087 Sum_probs=400.4
Q ss_pred CCCcceEEEEEeCCeEEEEECC---eEEEEecCceEE-EecccccceEEEEEe-CCEEEEEecCCcEEEEEccCCccccc
Q 004270 54 QLPKKIRALASYRDYTFAAYGN---HIAVVKRAHQVA-TWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLA 128 (764)
Q Consensus 54 ~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~~~~~~-~~~~h~~~v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~ 128 (764)
+|+..|++++|+|++.++|+|. .|++|+...... ....|...|.+++|. |++|++++.|++|++||+.+++.
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~--- 91 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV--- 91 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE---
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcE---
Confidence 6899999999999998888865 499999754433 345688999999985 77899999999999999998876
Q ss_pred ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEE-----------EEEcCCCCCeEEEEEcCC-CCEE
Q 004270 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL-----------YEFKGWGSSISSCVSSPA-LDVV 196 (764)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~h~~~i~~~~~sp~-~~~l 196 (764)
+..+. +...+..++|+|++ +++++|+.||.|++||++++++. ..+.+|.+.|.+++|+|+ +..|
T Consensus 92 -~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 92 -LTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp -EEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred -EEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 55555 45667888899999 89999999999999999998764 234679999999999996 5789
Q ss_pred EEEEcCCeEEEEEccCCceEEEEecc-----------------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee
Q 004270 197 AVGCSDGKIHVHNVRYDEELVTFTHS-----------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (764)
Q Consensus 197 a~g~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~ 259 (764)
++|+.||.| +||+++++.+..+..+ |...|.+++|+|+|. +|++|+.||.|++||++++++
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE
Confidence 999999999 9999999988887643 246799999999999 999999999999999999887
Q ss_pred eee--ee--cc-------------cccCeeEEEEec----CC-CEEEEEcCC-----CcEEEEEecCCCC----------
Q 004270 260 QSV--IR--EA-------------HDNAIISLHFFA----NE-PVLMSASAD-----NSIKMWIFDTTDG---------- 302 (764)
Q Consensus 260 ~~~--~~--~~-------------h~~~v~~l~~~~----~~-~~l~s~~~d-----~~i~vw~~~~~~~---------- 302 (764)
+.. +. .. |...|.+++|++ ++ .+|++++.| +.+++|++.....
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 653 21 01 345799999964 33 467777665 3788998532100
Q ss_pred ----CceeeEecc-CCCCCCeeEEEec----------CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270 303 ----DPRLLRFRS-GHSAPPLCIRFYA----------NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (764)
Q Consensus 303 ----~~~~~~~~~-~h~~~v~~i~~~~----------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (764)
.+...+.+. +|...+..+.+.+ +...+++++.|+.+++|++.++.......... .
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~----------~ 395 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP----------Q 395 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC----------G
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCC----------C
Confidence 001122222 4667888888755 34578999999999999986543221110000 0
Q ss_pred hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 004270 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 447 (764)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~ 447 (764)
......+++.++.........|....... ........+|...+.+++|+|+|+++++|+.||+
T Consensus 396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~-----------------~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dgt 458 (902)
T 2oaj_A 396 NLSWLRPLATTSMAASVPNKLWLGALSAA-----------------QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGS 458 (902)
T ss_dssp GGTTBTTBEEEEEEEEEEHHHHHHHHHTT-----------------BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSE
T ss_pred cccccCCCeeEEEEEEcCHHHHHHHHhcc-----------------cCCCCcccCCcCCCCcccccccCcEEEEecCCCc
Confidence 01112245555554433333333221100 0001233456677788899999999999999999
Q ss_pred EEEEECcCCcccc--eecCc-cccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------
Q 004270 448 IERFNLQSGISRG--SYLDM-SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD----------------- 507 (764)
Q Consensus 448 i~i~~~~~~~~~~--~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----------------- 507 (764)
|++||+.++.... .+... ......+|...|.+++|+|++++||+|+.||+|++||+.+++
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 9999999885321 11000 000012788999999999999999999999999999998663
Q ss_pred ----------------------------eeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE-----Ee
Q 004270 508 ----------------------------LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR-----KF 553 (764)
Q Consensus 508 ----------------------------~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~-----~~ 553 (764)
++..+. +...|++++||||| +||+|+.|++|++||++++..+. .+
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~ 617 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREI 617 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGT
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHh
Confidence 244454 44899999999999 99999999999999999887764 23
Q ss_pred e-cCCCCeeEEEEc-----CCC---cEEEEEeCCCcEEEEEc---CccceEEEEeeC------CceEEEE-Ec-------
Q 004270 554 E-GHTDRITDFCFS-----EDG---KWLLSSGMDGSLRIWDV---ILARQIDAIHVD------VSITALS-LS------- 607 (764)
Q Consensus 554 ~-~h~~~i~~l~~s-----~dg---~~l~s~s~dg~i~iwd~---~~~~~~~~~~~~------~~v~~l~-~s------- 607 (764)
. +|.+.|++++|+ ||| ++|++++.|++|++||+ .+|+....+..+ .+|.+++ |+
T Consensus 618 ~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 697 (902)
T 2oaj_A 618 SGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSC 697 (902)
T ss_dssp CSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBC
T ss_pred ccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcc
Confidence 3 899999999999 886 89999999999999999 889888887665 3577776 65
Q ss_pred ---------------CCCCeEEEEEeCCCeEEEEeccc
Q 004270 608 ---------------PNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 608 ---------------p~g~~lat~~~d~~~i~lW~~~~ 630 (764)
++|..||++ +. .|+||++.+
T Consensus 698 ~a~~~~~~~l~~~~~~~~~~l~~~--~~-~ir~~~~~~ 732 (902)
T 2oaj_A 698 LATIPKMQNLSKGLCIPGIVLITG--FD-DIRLITLGK 732 (902)
T ss_dssp BCBHHHHHGGGGTCCCCEEEEEEC--SS-EEEEECTTC
T ss_pred cCCHHHHhccCCCCCCCeEEEEEe--cc-ceEEEeCcc
Confidence 556555554 55 699999854
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-48 Score=452.67 Aligned_cols=465 Identities=17% Similarity=0.205 Sum_probs=372.8
Q ss_pred EEEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270 86 VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (764)
...+.+|.+.|+++++ +|++|++++.||.|++||+.+++. +..+..+...+..+.|+|++ ++|++|+.||.|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i 79 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE----VRSIQVTETPVRAGKFIARK--NWIIVGSDDFRI 79 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEEEGGG--TEEEEEETTSEE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce----EEEEecCCCcEEEEEEeCCC--CEEEEEeCCCeE
Confidence 4568999999999997 799999999999999999999887 77888888889999999999 899999999999
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEee-CCCCEEEE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS-DGQPLLAS 242 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~-d~~~~l~s 242 (764)
++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++.........|...|.+++|+| ++. ++++
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~ 158 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFAS 158 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEEE
Confidence 99999999999999999999999999999999999999999999999988444433344588999999999 677 8999
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeeEEEEec--CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (764)
Q Consensus 243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (764)
++.||.|++||+.+++....+...|...+.+++|+| +++++++++.|+.|++|++... ..+..+.+|...|.++
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFA 234 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT----EEEEEEECCSSCEEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cEEEEEcCCCCCEEEE
Confidence 999999999999999888888755668999999999 9999999999999999998765 5677778999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
+|+|+++++++++.||.|++||+.+......+... ..++.++... .+...++.+...+.
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~----~~~~~~~~~~~~~~ 293 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-----------------LERSWCIATH----PTGRKNYIASGFDN 293 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-----------------SSSEEEEEEC----TTCGGGEEEEEETT
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-----------------CCcEEEEEEc----cCCCceEEEEEeCC
Confidence 99999999999999999999998876554443221 1123333222 12223322223344
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCc---EEE------EECcCCcccceecCccccccc
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW---IER------FNLQSGISRGSYLDMSERSNY 471 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~---i~i------~~~~~~~~~~~~~~~~~~~~~ 471 (764)
.+.+|+... ....+.++|+|..+++++.+.. +.. |++..+...... .....
T Consensus 294 ~~~~~~~~~----------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 353 (814)
T 3mkq_A 294 GFTVLSLGN----------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQ----TKELG 353 (814)
T ss_dssp EEEEEECSC----------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCC----CEEEC
T ss_pred CEEEEEcCC----------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceee----eecCC
Confidence 455565432 1224566777777776655441 111 111122111110 01113
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~ 551 (764)
.+...+.+++|+|+|+++++++ |+.+.+|++...... ....+.+++|+|+++++|+++.++.|++|+
T Consensus 354 ~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~----~~~~i~~~~~spdg~~la~~~~~g~v~l~~-------- 420 (814)
T 3mkq_A 354 SVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK----AFGKCQDFVWGPDSNSYALIDETGQIKYYK-------- 420 (814)
T ss_dssp CCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----EEEECSEEEECTTSSCEEEECTTCCEEEEE--------
T ss_pred CCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc----CCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------
Confidence 5667789999999999999988 899999997654332 236788999999999999999999999995
Q ss_pred EeecCCCCeeEEEEcCCC---cEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEE
Q 004270 552 KFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH 617 (764)
Q Consensus 552 ~~~~h~~~i~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~ 617 (764)
.+.+|...+.+++|+||| ++|++++.|+.|++||+.+++.+..+..+.. .++|+|||++|++++
T Consensus 421 ~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~--~v~~s~dg~~la~~~ 487 (814)
T 3mkq_A 421 NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK--DVIWSDNGELVMIVN 487 (814)
T ss_dssp TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE--EEEECTTSSEEEEEE
T ss_pred CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC--EEEEcCCCCEEEEEE
Confidence 346788899999999998 6889999999999999999999999887665 999999999999994
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-47 Score=444.30 Aligned_cols=470 Identities=15% Similarity=0.192 Sum_probs=378.7
Q ss_pred eEEEecCCCCcceEEEEEeCCeEEEEECC---eEEEEec--CceEEEecccccceEEEEE--eCCEEEEEecCCcEEEEE
Q 004270 47 NLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWA 119 (764)
Q Consensus 47 ~~~~~~~~~~~~I~~~~~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd 119 (764)
++.....+|.+.|++++|+|++.+++++. .|++|+. ++.+..+.+|..+|.++.| +|++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34455668999999999999988887753 4999995 4567779999999999997 799999999999999999
Q ss_pred ccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEcC-CCCEEE
Q 004270 120 FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSP-ALDVVA 197 (764)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~sp-~~~~la 197 (764)
+.+++. +..+..+...+..++|+|++ ++|++++.||.|++||+.++ .....+.+|...|.+++|+| +++.|+
T Consensus 84 ~~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 84 YNTGEK----VVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp TTTCCE----EEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred CCCCcE----EEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 999887 77788888889999999999 89999999999999999987 77888999999999999999 889999
Q ss_pred EEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEee--CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEE
Q 004270 198 VGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS--DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLH 275 (764)
Q Consensus 198 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~--d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~ 275 (764)
+++.||.|++||+.+++....+..++...+.+++|+| ++. ++++++.||.|++||+.+++.+..+. +|...|.+++
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~ 235 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAV 235 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEE
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEE
Confidence 9999999999999999988888887678999999999 888 99999999999999999999998888 8999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE-EEEEeCCCcEEEEEeecccccccccc
Q 004270 276 FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQ 354 (764)
Q Consensus 276 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~dg~i~i~d~~~~~~~~~~~~ 354 (764)
|+|+++++++++.||.|++|++... .....+..|...+.+++|+|++.. +++++.++.+.+|++........+..
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDP 311 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC----SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC----cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECC
Confidence 9999999999999999999988765 567777889999999999999873 24444566699998765543222211
Q ss_pred hhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc--eEEE------EEccceeecceeecCCCCCCCC
Q 004270 355 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA--QAYV------WRLQNFVLGEHILRPCPENPTA 426 (764)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------w~~~~~~~~~~~~~~~~~~~~~ 426 (764)
+...+........ .+.. |++...............+...
T Consensus 312 ---------------------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (814)
T 3mkq_A 312 ---------------------------------VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVF 358 (814)
T ss_dssp ---------------------------------SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSC
T ss_pred ---------------------------------CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccC
Confidence 0001111110000 0000 1111111111111111234567
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (764)
Q Consensus 427 v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 506 (764)
+.+++++|+|+++++++ +|.+.+|++..... .+.+.+.+++|+|+++++++++.+|.|++|+.-.
T Consensus 359 ~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~-------------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~- 423 (814)
T 3mkq_A 359 PQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN-------------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK- 423 (814)
T ss_dssp CSEEEECTTSSEEEEEE-TTEEEEEETTTTEE-------------EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE-
T ss_pred CceeEECCCCCEEEEec-CCEEEEEECccccc-------------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-
Confidence 89999999999999998 89999999753221 4557788999999999999999999999996321
Q ss_pred CeeeeEecCcceEEEEEeecC---CEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE------eC
Q 004270 507 DLKSRWEVGCSLVKIVYHRVN---GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS------GM 577 (764)
Q Consensus 507 ~~~~~~~~~~~i~~~~~s~~~---~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~------s~ 577 (764)
.+...+.+++|+|++ ++|++++.|+.|++||+.+++.+..+.+|.. .++|+|||++|+++ +.
T Consensus 424 ------~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~ 494 (814)
T 3mkq_A 424 ------EVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDE 494 (814)
T ss_dssp ------ECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCS
T ss_pred ------CccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCC
Confidence 233677888999998 6889999999999999999999999998865 89999999999999 66
Q ss_pred CCcEEEEE
Q 004270 578 DGSLRIWD 585 (764)
Q Consensus 578 dg~i~iwd 585 (764)
++.+.+|.
T Consensus 495 ~~~~~~~~ 502 (814)
T 3mkq_A 495 ASGYTLLF 502 (814)
T ss_dssp CSEEEEEE
T ss_pred ceEEEEEe
Confidence 66555543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-43 Score=374.38 Aligned_cols=310 Identities=20% Similarity=0.362 Sum_probs=266.1
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw 252 (764)
....+.+|.++|++++|+|++++|++|+.||.|++||+.+++....+..| .+.|.+++|+|+++ +|++|+.|++|++|
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~~-~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGK-LLASCSADMTIKLW 177 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSS-EEEEEETTSCCCEE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999999999888765 88999999999999 99999999999999
Q ss_pred ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (764)
Q Consensus 253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (764)
|+.+++.+..+. +|...|.+++|+|++.+|++++.|++|++||+... ..+..+.+|...|.++.++|++.+++++
T Consensus 178 d~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 178 DFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp ETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence 999999998888 89999999999999999999999999999998765 5677788999999999999999999999
Q ss_pred eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceee
Q 004270 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (764)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 412 (764)
+.|++|++||+.+......+
T Consensus 253 s~D~~v~vwd~~~~~~~~~~------------------------------------------------------------ 272 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAEL------------------------------------------------------------ 272 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEE------------------------------------------------------------
T ss_pred cCCCeEEEEECCCCceeeEe------------------------------------------------------------
Confidence 99999999998655432221
Q ss_pred cceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE
Q 004270 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492 (764)
Q Consensus 413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 492 (764)
..|...+.+++|+|++.+..... ... .........+.+|+++
T Consensus 273 --------~~h~~~v~~~~~~~~~~~~~~~~----------------------------~~~--~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 273 --------REHRHVVECISWAPESSYSSISE----------------------------ATG--SETKKSGKPGPFLLSG 314 (410)
T ss_dssp --------CCCSSCEEEEEECCSCGGGGGGG----------------------------CCS--CC-------CCEEEEE
T ss_pred --------cCCCceEEEEEEcCcccccchhh----------------------------hcc--ccccccCCCCCEEEEE
Confidence 13457788888887654211000 000 0011223357899999
Q ss_pred eCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE
Q 004270 493 GYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571 (764)
Q Consensus 493 ~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~ 571 (764)
+.|+.|++||+.+++++..+..+ ..|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|++++|+|++++
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence 99999999999999998888765 78999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcC
Q 004270 572 LLSSGMDGSLRIWDVI 587 (764)
Q Consensus 572 l~s~s~dg~i~iwd~~ 587 (764)
|++|+.|++|++|++.
T Consensus 395 l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 395 VVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEETTSEEEEEC--
T ss_pred EEEEeCCCcEEEEeCC
Confidence 9999999999999863
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.7e-43 Score=355.70 Aligned_cols=292 Identities=16% Similarity=0.240 Sum_probs=254.3
Q ss_pred CeEEEEEcCCCCCeEEEEEcCC----CCEEEEEEcCCeEEEEEccCCceEE--EEeccCCCCEEEEEEeeCCCCEEEEEe
Q 004270 171 KKKLYEFKGWGSSISSCVSSPA----LDVVAVGCSDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSSDGQPLLASGA 244 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp~----~~~la~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~d~~~~l~sg~ 244 (764)
+.....+++|.+.|.+++|+|+ +.+|++|+.|++|++|++.+++... .+ .+|...|.+++|++++. ++++++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~~~-~l~s~s 99 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHTLP-IAASSS 99 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSSSS-EEEEEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCCCC-EEEEEe
Confidence 3445566899999999999985 5699999999999999998776433 34 34588999999999998 999999
Q ss_pred CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270 245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (764)
.|+.|++||+.+++.+..+. .|...+.+++|+|++++|++++.|+.|++|+++.. .....+..|...+.+++|+|
T Consensus 100 ~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~----~~~~~~~~~~~~v~~~~~sp 174 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG----KKEYSLDTRGKFILSIAYSP 174 (321)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC----SEEEEEECSSSCEEEEEECT
T ss_pred CCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC----ceeEEecCCCceEEEEEECC
Confidence 99999999999999999888 78889999999999999999999999999998765 34555567778888888888
Q ss_pred CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (764)
Q Consensus 325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (764)
++++|++++.|+.|++||+.+++
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~--------------------------------------------------------- 197 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGK--------------------------------------------------------- 197 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE---------------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCc---------------------------------------------------------
Confidence 88888888888888888764321
Q ss_pred EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484 (764)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 484 (764)
....+ .+|...|.+++|+|
T Consensus 198 -----------------------------------------------------~~~~~--------~~h~~~v~~l~~sp 216 (321)
T 3ow8_A 198 -----------------------------------------------------LLHTL--------EGHAMPIRSLTFSP 216 (321)
T ss_dssp -----------------------------------------------------EEEEE--------CCCSSCCCEEEECT
T ss_pred -----------------------------------------------------EEEEE--------cccCCceeEEEEcC
Confidence 12222 27888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEE
Q 004270 485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (764)
Q Consensus 485 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l 563 (764)
++++|++++.|+.|++||+.+++....+..+ ..|.+++|+|++.+|++++.|+.|++||+.+++++..+.+|.+.|.++
T Consensus 217 d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296 (321)
T ss_dssp TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence 9999999999999999999999988888765 789999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
+|+|+|++|++++.|++|++||.+
T Consensus 297 ~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 297 KYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECTTSSEEEEEETTCCEEEEECC
T ss_pred EECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999975
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-42 Score=357.59 Aligned_cols=292 Identities=16% Similarity=0.347 Sum_probs=264.3
Q ss_pred ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~ 293 (764)
+....+.. |.+.|.+++|+|+++ +|++|+.||.|++||+.+++.+..+. .|...|.+++|+|++++|++++.|+.++
T Consensus 46 ~~~~~l~g-H~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 46 RTRRTLRG-HLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEECC-CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred hhheeecC-CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 34455555 489999999999999 99999999999999999999988888 8999999999999999999999999999
Q ss_pred EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
+|++............+.+|...|.++.|++++. +++++.|++|++||+.++.....+
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~--------------------- 180 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF--------------------- 180 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE---------------------
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE---------------------
Confidence 9999877655567778889999999999998875 899999999999998765432221
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
.+|...+.+++++|+++++++|+.||.|++||+
T Consensus 181 -----------------------------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 181 -----------------------------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp -----------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -----------------------------------------------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 245688999999999999999999999999999
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEE
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLL 530 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~l 530 (764)
.++.....+. +|...|.+++|+|++++|++++.||+|++||+.+++.+..+.+. ..+.+++|+|++++|
T Consensus 214 ~~~~~~~~~~--------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 214 REGMCRQTFT--------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp TTCSEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CCCeeEEEEc--------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence 9998887775 89999999999999999999999999999999999888777654 479999999999999
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 531 a~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.|++|++||
T Consensus 286 ~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999999997
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.4e-43 Score=355.38 Aligned_cols=289 Identities=20% Similarity=0.298 Sum_probs=256.9
Q ss_pred eeeecccccCeeEEEEecC----CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 261 SVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 261 ~~~~~~h~~~v~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
.... +|.+.|.+++|+|+ +.+|++|+.|++|++|+++... ......+.+|...|.+++|++++..+++++.|+
T Consensus 26 ~~~~-~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQ-AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EETT-SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eecc-cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3344 89999999999885 5689999999999999987642 234456789999999999999999999999999
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
+|++||+.+++....+.
T Consensus 103 ~i~lWd~~~~~~~~~~~--------------------------------------------------------------- 119 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSID--------------------------------------------------------------- 119 (321)
T ss_dssp EEEEEETTTTEEEEEEE---------------------------------------------------------------
T ss_pred cEEEEECCCCCEEEEEe---------------------------------------------------------------
Confidence 99999987664433221
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (764)
.+...+.+++|+|+|+++++|+.+|.|++|++.++.....+. .|...|.+++|+|++++|++++.||
T Consensus 120 -----~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~--------~~~~~v~~~~~spdg~~lasg~~dg 186 (321)
T 3ow8_A 120 -----AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD--------TRGKFILSIAYSPDGKYLASGAIDG 186 (321)
T ss_dssp -----CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE--------CSSSCEEEEEECTTSSEEEEEETTS
T ss_pred -----CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec--------CCCceEEEEEECCCCCEEEEEcCCC
Confidence 233567789999999999999999999999999998877764 7888999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE
Q 004270 497 DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~ 575 (764)
.|++||+.+++.+..+..+ .+|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|+++
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 266 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS 266 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9999999999999888765 789999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 576 GMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 576 s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
+.|++|++||+.+++++..+..|. .|.+++|+|+|.+|++++.|+ .|++|+..
T Consensus 267 s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~-~i~vwd~p 320 (321)
T 3ow8_A 267 SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ-EIHIYDCP 320 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC-CEEEEECC
T ss_pred eCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEeCC
Confidence 999999999999999999987665 599999999999999999999 59999963
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-42 Score=348.28 Aligned_cols=293 Identities=17% Similarity=0.243 Sum_probs=259.1
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
+...++.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+|.+++|+|+++ +|++|+.|+.|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT-ETPVRAGKFIARKN-WIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGT-EEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc-CCcEEEEEEeCCCC-EEEEECCCCEEEE
Confidence 456788999999999999999999999999999999999999999888765 78999999999999 9999999999999
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL 330 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~ 330 (764)
||+.+++.+..+. +|...|.+++|+|++++|++++.|++|++||++... .....+.+|...|.+++|+| ++..|+
T Consensus 82 wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 82 FNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred EECCCCcEEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhhcccCCcEEEEEECCCCCCEEE
Confidence 9999999999998 899999999999999999999999999999987642 45567789999999999999 678999
Q ss_pred EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (764)
Q Consensus 331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (764)
+++.|++|++||+........
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~----------------------------------------------------------- 178 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFT----------------------------------------------------------- 178 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEE-----------------------------------------------------------
T ss_pred EEeCCCeEEEEECCCCCccce-----------------------------------------------------------
Confidence 999999999999753321100
Q ss_pred eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC--CCCE
Q 004270 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTL 488 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~ 488 (764)
+. .+|...+..+.++| ++++
T Consensus 179 ---------------------------------------------------~~-------~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 179 ---------------------------------------------------LT-------TGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp ---------------------------------------------------EE-------CCCTTCEEEEEECCSTTCCE
T ss_pred ---------------------------------------------------ec-------cCCcCcEEEEEEEEcCCCCE
Confidence 00 15666788888876 6789
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270 489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 489 l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~ 567 (764)
|++++.|++|++||+.+++++..+..+ ..|.+++|+|++.+|++|+.||.|++||+.++++++.+..|...+.+++|+|
T Consensus 201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 999999999999999999999998866 8899999999999999999999999999999999999999999999999999
Q ss_pred CCc--EEEEEeCCCcEEEEEcCc
Q 004270 568 DGK--WLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 568 dg~--~l~s~s~dg~i~iwd~~~ 588 (764)
+++ ++++|+.|| +.+|++.+
T Consensus 281 ~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 281 TGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp TCGGGCEEEEETTE-EEEEECC-
T ss_pred CCCceEEEEecCCc-eEEEEecc
Confidence 885 577777555 88888764
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-42 Score=367.14 Aligned_cols=288 Identities=23% Similarity=0.354 Sum_probs=261.6
Q ss_pred eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE
Q 004270 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~ 339 (764)
...+. +|.++|++++|+|++++|++|+.|++|++||+.+. .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 101 ~~~l~-gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 101 KYALS-GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG----DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp SCEEE-CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC----CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred eEeec-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 34455 89999999999999999999999999999998776 45677789999999999999999999999999999
Q ss_pred EEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC
Q 004270 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (764)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 419 (764)
+||+.+......
T Consensus 176 iwd~~~~~~~~~-------------------------------------------------------------------- 187 (410)
T 1vyh_C 176 LWDFQGFECIRT-------------------------------------------------------------------- 187 (410)
T ss_dssp EEETTSSCEEEC--------------------------------------------------------------------
T ss_pred EEeCCCCceeEE--------------------------------------------------------------------
Confidence 999865433222
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (764)
Q Consensus 420 ~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 499 (764)
..+|...|.+++|+|+|+++++|+.||.|++||+.++.....+. +|...|.+++++|+++++++++.|+.|+
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------GHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------CCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 23566899999999999999999999999999999998888775 8999999999999999999999999999
Q ss_pred EEECCCCCeeeeEecC-cceEEEEEeec--------------------CCEEEEEeCCCeEEEEEccCCeEEEEeecCCC
Q 004270 500 VWDFKGRDLKSRWEVG-CSLVKIVYHRV--------------------NGLLATVADDLVIRLFDVVALRMVRKFEGHTD 558 (764)
Q Consensus 500 iwd~~~~~~~~~~~~~-~~i~~~~~s~~--------------------~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~ 558 (764)
+||+.+++....+..+ ..|.+++|+|+ +.+|++|+.|+.|++||+.+++++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 9999999988888655 78999999996 67899999999999999999999999999999
Q ss_pred CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.|++++|+|+|++|++++.|++|++||+.+++++..+..|. .|++++|+|++.+|++++.|+ .|++|+.+
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~-~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS-EEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEeCC
Confidence 99999999999999999999999999999999999998776 499999999999999999999 69999864
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-42 Score=366.63 Aligned_cols=342 Identities=14% Similarity=0.237 Sum_probs=289.5
Q ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEc----cCCc------eEEEEecc-------
Q 004270 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNV----RYDE------ELVTFTHS------- 222 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~----~~~~------~~~~~~~~------- 222 (764)
..+.+|+.+..........|.+.|.+++|+|+++ +||+|+.||.|++|++ .+++ ....+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 3456788877766666677789999999999999 9999999999999999 8888 45555441
Q ss_pred --CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 223 --MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 223 --~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
|.+.|++++|+|+++ +|++|+.||.|++|| .+++.+..+. +|...|.+++|+|++++|++++.|+.|++|++...
T Consensus 105 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGN-SIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp ---CBCEEEEEECTTSS-EEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred cCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 467999999999999 999999999999999 6777777777 89999999999999999999999999999998765
Q ss_pred CCCceeeEeccCCCCC---------------CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270 301 DGDPRLLRFRSGHSAP---------------PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~---------------v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 365 (764)
..+..+..+... +.+++|++++ .+++++.|+.|++||+.+......+
T Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~------------- 243 (425)
T 1r5m_A 182 ----TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL------------- 243 (425)
T ss_dssp ----EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE-------------
T ss_pred ----cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee-------------
Confidence 556666666666 9999999985 5889999999999998765432221
Q ss_pred chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 004270 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445 (764)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~ 445 (764)
..+...+.+++++|+++++++++.+
T Consensus 244 -------------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 244 -------------------------------------------------------IGHHGPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp -------------------------------------------------------CCCSSCEEEEEEETTTTEEEEEETT
T ss_pred -------------------------------------------------------ccCCCceEEEEECCCCCEEEEEcCC
Confidence 1345789999999999999999999
Q ss_pred CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEe
Q 004270 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH 524 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s 524 (764)
|.|++||+.++.....+. .|...|.+++|+|++ ++++++.||.|++||+.+++.+..+..+ ..+.+++|+
T Consensus 269 ~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFY--------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS 339 (425)
T ss_dssp SCEEEECSSSBSCSEEEC--------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred CEEEEEECCCCccceEec--------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence 999999999988877774 799999999999999 9999999999999999999998888764 899999999
Q ss_pred ecCCEEEEEeCCCeEEEEEccCCe--------------------EEEEeecCCC--CeeEEEEcCCCcEEEEEeCCCcEE
Q 004270 525 RVNGLLATVADDLVIRLFDVVALR--------------------MVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLR 582 (764)
Q Consensus 525 ~~~~~la~~~~d~~i~v~d~~~~~--------------------~~~~~~~h~~--~i~~l~~s~dg~~l~s~s~dg~i~ 582 (764)
|++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.||.|+
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS 419 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence 999999999999999999999988 8999999977 999999999999999999999999
Q ss_pred EEEcC
Q 004270 583 IWDVI 587 (764)
Q Consensus 583 iwd~~ 587 (764)
+||++
T Consensus 420 iw~~~ 424 (425)
T 1r5m_A 420 VVAIP 424 (425)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99986
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.8e-42 Score=353.73 Aligned_cols=289 Identities=20% Similarity=0.313 Sum_probs=256.8
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~i 251 (764)
+...++++|...|.+++|+|++++|++|+.||.|++||..+++....+..+ ...|.+++|+|+|. ++++|+.|+.+++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-~~~v~~~~~sp~g~-~lasg~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP-CTWVMACAYAPSGC-AIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCEEEECTTSS-EEEEESTTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC-CCCEEEEEECCCCC-EEEEeeCCCCEEE
Confidence 567889999999999999999999999999999999999999988888765 77899999999999 9999999999999
Q ss_pred EECCCc------eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-
Q 004270 252 WNLEKR------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA- 324 (764)
Q Consensus 252 wd~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~- 324 (764)
|++... .....+. +|.+.|.+++|+|++..|++++.|++|++||++.. ..+..+.+|...|.+++++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----QLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp EECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECCC
T ss_pred EEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEEEEeC
Confidence 998643 2344455 79999999999999999999999999999998765 56777889999999999987
Q ss_pred -CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 325 -NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 325 -~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
++++|++++.||++++||+++++.
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~------------------------------------------------------- 232 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQC------------------------------------------------------- 232 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCE-------------------------------------------------------
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE-------------------------------------------------------
Confidence 568899999999999998754321
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
...+ .+|...|.+++|+
T Consensus 233 -------------------------------------------------------~~~~--------~~h~~~v~~v~~~ 249 (354)
T 2pbi_B 233 -------------------------------------------------------VQAF--------ETHESDVNSVRYY 249 (354)
T ss_dssp -------------------------------------------------------EEEE--------CCCSSCEEEEEEC
T ss_pred -------------------------------------------------------EEEe--------cCCCCCeEEEEEe
Confidence 1111 2788999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe
Q 004270 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560 (764)
Q Consensus 484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i 560 (764)
|++.+|++++.|++|++||+.+++.+..+..+ ..+.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|.+.|
T Consensus 250 p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 250 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE
Confidence 99999999999999999999988777666544 478999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 561 TDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 561 ~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
++++|+|||++|++++.|++|++|+
T Consensus 330 ~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 330 STLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999996
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-41 Score=343.22 Aligned_cols=290 Identities=18% Similarity=0.270 Sum_probs=253.3
Q ss_pred eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEE
Q 004270 215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (764)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~v 294 (764)
...++..+ .+.|.+++|+|+++ +|++|+.||.|++||+.+++.+..+. .|..+|.+++|+|++++|++++.|++|++
T Consensus 5 ~~~~~~~h-~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 5 IKKTFSNR-SDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEEE-CSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eEEeecCC-CCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 34556555 78999999999999 99999999999999999999999888 89999999999999999999999999999
Q ss_pred EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
||+... +.+..+.+|...|.+++|+|++++|++++.|++|++||+.++...
T Consensus 82 wd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~------------------------- 132 (304)
T 2ynn_A 82 FNYNTG----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL------------------------- 132 (304)
T ss_dssp EETTTC----CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE-------------------------
T ss_pred EECCCC----cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch-------------------------
Confidence 998766 567778899999999999999999999999999999997532110
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~ 454 (764)
T Consensus 133 -------------------------------------------------------------------------------- 132 (304)
T 2ynn_A 133 -------------------------------------------------------------------------------- 132 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecC--cceEEEEEee--cCCE
Q 004270 455 SGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHR--VNGL 529 (764)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~--~~~~ 529 (764)
...+ .+|...|.+++|+| ++.+|++++.|++|++||+.++.....+..+ ..+..+.++| ++.+
T Consensus 133 ----~~~~--------~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 133 ----EQTF--------EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp ----EEEE--------CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred ----hhhh--------cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE
Confidence 0011 27899999999999 6789999999999999999887776666433 6788999987 7789
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcC
Q 004270 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSP 608 (764)
Q Consensus 530 la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp 608 (764)
|++++.|+.|++||+++++++..+.+|...|++++|+|++++|++++.||+|++||+.+++++..+..+. .+.+++|+|
T Consensus 201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764 599999999
Q ss_pred CCC--eEEEEEeCCCeEEEEeccc
Q 004270 609 NMD--VLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 609 ~g~--~lat~~~d~~~i~lW~~~~ 630 (764)
++. ++|+++.| ++.+|++..
T Consensus 281 ~~~~~~~asg~~~--g~~~~~~~~ 302 (304)
T 2ynn_A 281 TGRKNYIASGFDN--GFTVLSLGN 302 (304)
T ss_dssp TCGGGCEEEEETT--EEEEEECC-
T ss_pred CCCceEEEEecCC--ceEEEEecc
Confidence 885 57777655 488888753
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-41 Score=344.96 Aligned_cols=291 Identities=18% Similarity=0.322 Sum_probs=250.9
Q ss_pred eEEEEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCC-----ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270 172 KKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYD-----EELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~ 245 (764)
.+..++.+|.+.|.+++|+|++ ++|++|+.|++|++|++... ..+..+..| ...|.+++|+|+++ +|++|+.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~-~l~s~s~ 85 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH-SHIVQDCTLTADGA-YALSASW 85 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC-SSCEEEEEECTTSS-EEEEEET
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC-cccEEEEEECCCCC-EEEEEeC
Confidence 4566789999999999999965 89999999999999998743 345556554 88999999999999 9999999
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (764)
|++|++||+.+++.+..+. +|...|.+++|+|++.+|++++.|++|++|+++. ..+..+.+|...|.++++.|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-----~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-----CEEEEECCCSSCEEEEEECCC
T ss_pred CCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEeccCCcEEEEEEccC
Confidence 9999999999999999988 9999999999999999999999999999999853 356677899999999999885
Q ss_pred C------CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270 326 G------RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (764)
Q Consensus 326 ~------~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (764)
+ ..+++++.|+.|++||+.
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~------------------------------------------------------- 184 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLN------------------------------------------------------- 184 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETT-------------------------------------------------------
T ss_pred CCCCCCccEEEEEeCCCEEEEEECC-------------------------------------------------------
Confidence 3 356666666666666643
Q ss_pred ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 479 (764)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 479 (764)
++.....+ .+|...|.+
T Consensus 185 -------------------------------------------------------~~~~~~~~--------~~h~~~v~~ 201 (319)
T 3frx_A 185 -------------------------------------------------------QFQIEADF--------IGHNSNINT 201 (319)
T ss_dssp -------------------------------------------------------TTEEEEEE--------CCCCSCEEE
T ss_pred -------------------------------------------------------cchhheee--------cCCCCcEEE
Confidence 33322333 289999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec----
Q 004270 480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---- 555 (764)
Q Consensus 480 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~---- 555 (764)
++|+|++++|++++.||.|++||+.+++.+..+..+..+.+++|+|++.++++++.+ .+++|++..+..+..+..
T Consensus 202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~ 280 (319)
T 3frx_A 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG 280 (319)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc
Confidence 999999999999999999999999999999999989999999999999999988765 599999998888777653
Q ss_pred ----CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc
Q 004270 556 ----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589 (764)
Q Consensus 556 ----h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~ 589 (764)
|...+.+++|+|||++|++|+.|+.|++||+.++
T Consensus 281 ~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 281 YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 4567999999999999999999999999999765
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7e-43 Score=365.39 Aligned_cols=307 Identities=20% Similarity=0.294 Sum_probs=265.3
Q ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240 (764)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l 240 (764)
..+..|+..+..+.+++.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+..+ ...|.+++|+|+|+ +|
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-~~~v~~~~~s~~g~-~l 123 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-CPWVMECAFAPNGQ-SV 123 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC-CTTCCCCEECTTSS-EE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC-CCCEEEEEECCCCC-EE
Confidence 44567888888999999999999999999999999999999999999999999999888775 78899999999999 99
Q ss_pred EEEeCCCcEEEEECCCce-------eeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEec--
Q 004270 241 ASGASSGVISIWNLEKRR-------LQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFR-- 310 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~-------~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-- 310 (764)
++|+.|+.+++||+.+.. ....+. +|.+.|.++.|+|++ ..|++++.|++|++||+.... .+..+
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~----~~~~~~~ 198 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ----RISIFGS 198 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC----EEEEECC
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc----EEEEeec
Confidence 999999999999987532 233444 899999999999974 579999999999999887653 33332
Q ss_pred ---cCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270 311 ---SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (764)
Q Consensus 311 ---~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (764)
.+|...|.+++|++ ++++|++|+.|++|++||++....
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------------------------------- 240 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------------------------------- 240 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--------------------------------------
T ss_pred ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--------------------------------------
Confidence 67999999999987 888999999999999999742110
Q ss_pred ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466 (764)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~ 466 (764)
....+
T Consensus 241 -----------------------------------------------------------------------~~~~~---- 245 (380)
T 3iz6_a 241 -----------------------------------------------------------------------AVRTY---- 245 (380)
T ss_dssp -----------------------------------------------------------------------CCEEE----
T ss_pred -----------------------------------------------------------------------ceEEE----
Confidence 01111
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeCCCe
Q 004270 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLV 538 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~ 538 (764)
.+|.+.|.+++|+|++++|++++.||+|++||+.+++.+..+..+ ..+.+++|+|+|++|++|+.||.
T Consensus 246 ----~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 246 ----HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp ----CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred ----CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 379999999999999999999999999999999999888776543 24899999999999999999999
Q ss_pred EEEEEccCCeEEEEe----ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccce
Q 004270 539 IRLFDVVALRMVRKF----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591 (764)
Q Consensus 539 i~v~d~~~~~~~~~~----~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~ 591 (764)
|++||+.+++.+..+ .+|.+.|++++|+|||++|++|+.|++|++|++...+.
T Consensus 322 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 999999999988887 68999999999999999999999999999999986643
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=349.67 Aligned_cols=307 Identities=17% Similarity=0.249 Sum_probs=237.9
Q ss_pred CCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE--EEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270 170 TKKKLYEFKGWGS-SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSSDGQPLLASGASS 246 (764)
Q Consensus 170 ~~~~~~~~~~h~~-~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~d~~~~l~sg~~d 246 (764)
..+++.++.+|.. .|.+++|+|++++||+|+.|+.|+|||+.++.... .+..+|...|.+++|+|+++ +|++|+.|
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D 82 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFD 82 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-EEEEEETT
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-EEEEEECC
Confidence 3467788999988 99999999999999999999999999999886543 33356689999999999999 99999999
Q ss_pred CcEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270 247 GVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (764)
Q Consensus 247 g~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (764)
+.|++||+..+ +.+..+. +|...|.+++|+|++++|++++.|++|++|+++... ....+..+.+|...|.+++|+|
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp SCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEEEEEECS
T ss_pred CcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeEEEEECC
Confidence 99999998876 3456666 899999999999999999999999999999987653 2345667789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (764)
Q Consensus 325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (764)
++++|++++.|++|++|+...+.....
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~----------------------------------------------------- 187 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCC----------------------------------------------------- 187 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEE-----------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEE-----------------------------------------------------
Confidence 999999999999999999754321000
Q ss_pred EEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC
Q 004270 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484 (764)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 484 (764)
. .+ .+|...|.+++|+|
T Consensus 188 -------------~------------------------------------------~~--------~~h~~~v~~l~~sp 204 (345)
T 3fm0_A 188 -------------A------------------------------------------TL--------EGHESTVWSLAFDP 204 (345)
T ss_dssp -------------E------------------------------------------EE--------CCCSSCEEEEEECT
T ss_pred -------------E------------------------------------------Ee--------cCCCCceEEEEECC
Confidence 0 00 14555555555555
Q ss_pred CCCEEEEEeCCCeEEEEECCCC---------------CeeeeEe--cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC
Q 004270 485 TNTLMISAGYHGDIKVWDFKGR---------------DLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 485 ~~~~l~s~~~dg~v~iwd~~~~---------------~~~~~~~--~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~ 547 (764)
++++|++++.|++|++|+.... +++..+. +...|.+++|+|++..|++++.|+.|++|+....
T Consensus 205 ~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 5555555555555555553211 1122222 3478999999999999999999999999998754
Q ss_pred e---------EEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEE
Q 004270 548 R---------MVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAI 595 (764)
Q Consensus 548 ~---------~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~ 595 (764)
. ......+|...|++++|+|++ .+||+++.||+|++|++.+++.....
T Consensus 285 ~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 285 SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp SCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred CCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 2 123346899999999999998 59999999999999999988765543
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=362.48 Aligned_cols=357 Identities=14% Similarity=0.177 Sum_probs=287.7
Q ss_pred CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC----CCce------eeeeeec-------
Q 004270 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL----EKRR------LQSVIRE------- 265 (764)
Q Consensus 203 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~----~~~~------~~~~~~~------- 265 (764)
..+.+|+++..........+ .+.|++++|+|+++.+|++|+.||.|++||+ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVK-LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ---------CCCEECEEEEE-CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred cccccccchhhhhheeeeec-cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 34567887665555444333 6899999999999878999999999999999 8887 4444441
Q ss_pred --ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 266 --AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 266 --~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
+|.+.|.+++|+|++++|++++.|+.|++|+.. ...+..+.+|...|.+++|+|++++|++++.|+.+++||+
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-----GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEETT-----SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-----CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 167899999999999999999999999999822 2566777899999999999999999999999999999999
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
.++.....+........ ..........
T Consensus 179 ~~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~ 205 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGS-----------------------------------------------------SINAENHSGD 205 (425)
T ss_dssp TTTEEEEEECCC--------------------------------------------------------------------
T ss_pred CCCcEEEEeeccccCcc-----------------------------------------------------ceeeccccCC
Confidence 77655444322110000 0000000011
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
...+.++++++++ .+++++.+|.|++|++.++.....+. .|...|.+++|+|++++|++++.||.|++||+
T Consensus 206 ~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 206 GSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI--------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC--------CCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred cceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec--------cCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 2347788898874 58899999999999999988877764 89999999999999999999999999999999
Q ss_pred CCCCeeeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEE
Q 004270 504 KGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582 (764)
Q Consensus 504 ~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~ 582 (764)
.+++.+..+.. ...+.+++|+|++ ++++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|+
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 99988888864 4899999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccc--------------------eEEEEeeC--C-ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 583 IWDVILAR--------------------QIDAIHVD--V-SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 583 iwd~~~~~--------------------~~~~~~~~--~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
+||+.+++ ++..+..+ . .|++++|+|++++|++++.|+ .|++|+++
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ-EGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS-CCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc-eEEEEeec
Confidence 99999988 88888877 5 799999999999999999999 59999985
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-42 Score=357.99 Aligned_cols=322 Identities=17% Similarity=0.192 Sum_probs=243.8
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC------CCcEEEEEecCCCC
Q 004270 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA------DNSIKMWIFDTTDG 302 (764)
Q Consensus 229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------d~~i~vw~~~~~~~ 302 (764)
.+.+.+++. ++.++.+.....|++....+ . +|...|++++|+|||++|++++. |+.+++|+......
T Consensus 10 g~d~g~~~~--~~~~~g~~~~~~w~~p~~~p----~-~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~ 82 (357)
T 4g56_B 10 GVDLGTENL--YFQSNGSSKGSAWGRPVTAP----A-CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP 82 (357)
T ss_dssp -------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred CCCCCccce--EEecCCCccccccCCCCCCc----c-cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence 445555553 44555567789999764432 2 79999999999999999999997 67788886655443
Q ss_pred CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (764)
Q Consensus 303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (764)
.........+|...|.+++|+|+++ +++++.||+|++||+.+++.......
T Consensus 83 ~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~---------------------------- 133 (357)
T 4g56_B 83 NESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKF---------------------------- 133 (357)
T ss_dssp CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCE----------------------------
T ss_pred ceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEee----------------------------
Confidence 3344445567899999999999975 56788899999999876543222100
Q ss_pred ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
...+|...|.+++|+|+|++|++|+.||.|++||+.++.....+
T Consensus 134 ------------------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~ 177 (357)
T 4g56_B 134 ------------------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177 (357)
T ss_dssp ------------------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ------------------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 01246689999999999999999999999999999999888887
Q ss_pred cCccccccccccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCeeeeEec---CcceEEEEEeecC-CEEEEEeCCC
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVN-GLLATVADDL 537 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~-~~la~~~~d~ 537 (764)
. +|...|++++|++++. ++++++.||.|++||+.+++....+.. ...+.+++|+|++ .+|++|+.|+
T Consensus 178 ~--------~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 178 N--------AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp C--------CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred c--------CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 5 8999999999999874 789999999999999999887776643 3679999999974 6889999999
Q ss_pred eEEEEEccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcC-CCCeEEE
Q 004270 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP-NMDVLAT 615 (764)
Q Consensus 538 ~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~lat 615 (764)
.|++||+.+++.+..+.+|...|++++|+|++ ++|++++.|++|+|||+.+++++..+.+...|++++|+| ++.+||+
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence 99999999999999999999999999999987 589999999999999999999988887777899999999 8999999
Q ss_pred EEeCCCeEEEEecccc
Q 004270 616 AHVDQNGVYLWVNRCM 631 (764)
Q Consensus 616 ~~~d~~~i~lW~~~~~ 631 (764)
++.|+ .|++|++...
T Consensus 330 ~s~Dg-~v~iW~~~~~ 344 (357)
T 4g56_B 330 VGWDH-KVLHHHLPSE 344 (357)
T ss_dssp EETTS-CEEEEECC--
T ss_pred EcCCC-eEEEEECCCC
Confidence 99999 5999998643
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.2e-42 Score=356.34 Aligned_cols=310 Identities=16% Similarity=0.241 Sum_probs=235.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc------CCeEEEEEccCCceEEE---EeccC
Q 004270 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS------DGKIHVHNVRYDEELVT---FTHSM 223 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~------dg~i~iwd~~~~~~~~~---~~~~~ 223 (764)
.++.++.+.....|++... ...+|...|.+++|||||++||+|+. |+.|++|+..++..... ....|
T Consensus 18 ~~~~~~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~ 93 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT 93 (357)
T ss_dssp --------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred eEEecCCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence 4555566677899987543 33579999999999999999999997 78899999877653221 12234
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee---ecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI---REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
...|.+++|+|++. +++++.||.|++||+.+++..... ..+|.+.|++++|+|++++|++++.|+.|++||+...
T Consensus 94 ~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 94 EAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp SSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred CCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 67899999999986 556788999999999888654322 2379999999999999999999999999999998765
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (764)
..+..+.+|...|++++|++++. .+++++.|++|++||+++++....+.
T Consensus 172 ----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-------------------------- 221 (357)
T 4g56_B 172 ----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-------------------------- 221 (357)
T ss_dssp ----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC--------------------------
T ss_pred ----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee--------------------------
Confidence 67788889999999999999774 78899999999999976543221110
Q ss_pred eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 459 (764)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~ 459 (764)
T Consensus 222 -------------------------------------------------------------------------------- 221 (357)
T 4g56_B 222 -------------------------------------------------------------------------------- 221 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC-CEEEEEeCC
Q 004270 460 GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADD 536 (764)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d 536 (764)
...|...+.+++|+|++ .+|++++.|+.|++||+.+++.+..+..+ ..|.+++|+|++ ++||+|+.|
T Consensus 222 ----------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 222 ----------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp ----------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred ----------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence 02567789999999974 68889999999999999999998888765 889999999987 589999999
Q ss_pred CeEEEEEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEeCCCcEEEEEcCcc
Q 004270 537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILA 589 (764)
Q Consensus 537 ~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~ 589 (764)
++|+|||++++++++.+ +|.+.|++++|+| |+++|+|++.||+|++|++++.
T Consensus 292 ~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 292 CTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999888665 7999999999998 8999999999999999999764
No 28
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-40 Score=342.60 Aligned_cols=289 Identities=18% Similarity=0.300 Sum_probs=258.0
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd 209 (764)
..++..|...+..+.|+|++ ++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~--~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEECCCSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred heeecCCCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 56677888899999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc----eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEE
Q 004270 210 VRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285 (764)
Q Consensus 210 ~~~~~----~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 285 (764)
+.+++ ....+.. |.+.|.++.|++++. +++++.|+.|++||+++++.+..+. +|.+.|.+++|+|+++++++
T Consensus 126 ~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 126 LKTREGNVRVSRELAG-HTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp TTTCSBSCEEEEEEEC-CSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEE
T ss_pred CccCCCcceeEEEecC-CCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEEE
Confidence 98764 3344444 588999999999875 8889999999999999999998888 89999999999999999999
Q ss_pred EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (764)
Q Consensus 286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 365 (764)
++.|++|++||+... .....+.+|...|.+++|+|++++|++++.|++|++||+........+.
T Consensus 202 g~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------------ 265 (340)
T 1got_B 202 GACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS------------ 265 (340)
T ss_dssp EETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------------
T ss_pred EeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc------------
Confidence 999999999998765 5677788999999999999999999999999999999987654322211
Q ss_pred chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 004270 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445 (764)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~ 445 (764)
...+...+.+++|+|+|+++++|+.|
T Consensus 266 ------------------------------------------------------~~~~~~~v~~~~~s~~g~~l~~g~~d 291 (340)
T 1got_B 266 ------------------------------------------------------HDNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp ------------------------------------------------------CTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred ------------------------------------------------------cCCcccceEEEEECCCCCEEEEECCC
Confidence 01223579999999999999999999
Q ss_pred CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
|.|++||+.++.....+. +|...|.+++|+|++++|++++.||.|++||
T Consensus 292 ~~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 292 FNCNVWDALKADRAGVLA--------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTTCCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CeEEEEEcccCcEeeEee--------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999988877775 8999999999999999999999999999996
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=347.32 Aligned_cols=299 Identities=15% Similarity=0.197 Sum_probs=236.0
Q ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC------------CceEEEEeccCCCCEEEE
Q 004270 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY------------DEELVTFTHSMRGAVTAL 230 (764)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~------------~~~~~~~~~~~~~~v~~l 230 (764)
.+.|++....+ ..|...|.+++|+|||++|++++ |+++++||... +.....+. +...|.++
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 88 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ--TEAGVADL 88 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEE--ESSCEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeec--cCCCEEEE
Confidence 46677654432 35778899999999999999887 67778886321 11112222 25679999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee---cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR---EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (764)
+|+|++ .|++|+.||.|+|||+++++...... .+|.+.|++++|+|++++|++++.|++|++||+... +.+
T Consensus 89 ~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~----~~~ 162 (344)
T 4gqb_B 89 TWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ----VVL 162 (344)
T ss_dssp EEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEE
T ss_pred EEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----cEE
Confidence 999986 57899999999999999887554332 379999999999999999999999999999998765 678
Q ss_pred EeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270 308 RFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (764)
..+.+|...|.+++|++++ ..|++++.|++|++||+++++....+..
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------------------------- 210 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-------------------------------- 210 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------------------------
T ss_pred EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec--------------------------------
Confidence 8889999999999999987 5788999999999999865433221100
Q ss_pred ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466 (764)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~ 466 (764)
T Consensus 211 -------------------------------------------------------------------------------- 210 (344)
T 4gqb_B 211 -------------------------------------------------------------------------------- 210 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC-CEEEEEeCCCeEEEEE
Q 004270 467 ERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFD 543 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d~~i~v~d 543 (764)
..|...+.+++|+|+ ++++++++.||.|++||+++++++..+..+ ..|.+++|+|++ ++||+|+.|++|+|||
T Consensus 211 ----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 211 ----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp -------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred ----ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 145667889999985 578899999999999999999999988866 889999999998 5899999999999999
Q ss_pred ccCCeEEEEeecCCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCccce
Q 004270 544 VVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILARQ 591 (764)
Q Consensus 544 ~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~~ 591 (764)
+.+++++ .+.+|.+.|++++|+|+++ +|++++.|++|++|++++...
T Consensus 287 ~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 287 SSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9998865 5789999999999999986 567999999999999987543
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-40 Score=340.62 Aligned_cols=299 Identities=21% Similarity=0.318 Sum_probs=237.2
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC--ceEEEEecc-CCCCEEEEEEeeCCCCEEEEEeC
Q 004270 169 STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD--EELVTFTHS-MRGAVTALAFSSDGQPLLASGAS 245 (764)
Q Consensus 169 ~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~--~~~~~~~~~-~~~~v~~l~fs~d~~~~l~sg~~ 245 (764)
.+.+++..+++|.+.|.+++|+|+ +||+|+.|+.|++||+.++ +....+... |.+.|.+++|+|+++ +|++|+.
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~ 78 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF 78 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEET
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeC
Confidence 456788899999999999999997 9999999999999999875 344555333 688999999999998 9999999
Q ss_pred CCcEEEEECCC-------ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270 246 SGVISIWNLEK-------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (764)
Q Consensus 246 dg~i~iwd~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (764)
|+.|++||+.. .+.+..+. +|...|.+++|+|++++|++++.|++|++||++........+..+.+|...|.
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred CCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 99999999853 34556666 89999999999999999999999999999998654444466778889999999
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270 319 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (764)
Q Consensus 319 ~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (764)
+++|+|++.+|++++.|++|++||...+..
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-------------------------------------------------- 187 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDW-------------------------------------------------- 187 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEE--------------------------------------------------
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCe--------------------------------------------------
Confidence 999999999999999999999999753210
Q ss_pred CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
.....+ .+|...|.
T Consensus 188 ----------------------------------------------------------~~~~~~--------~~h~~~v~ 201 (330)
T 2hes_X 188 ----------------------------------------------------------ECVAVL--------NGHEGTVW 201 (330)
T ss_dssp ----------------------------------------------------------EEEEEE--------CCCSSCEE
T ss_pred ----------------------------------------------------------eEEEEc--------cCCCCcEE
Confidence 000011 27888888
Q ss_pred EEEECCC--CCEEEEEeCCCeEEEEECCCC--------CeeeeEe--cCcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 479 GVACDST--NTLMISAGYHGDIKVWDFKGR--------DLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 479 ~l~~~~~--~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~--~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
+++|+|+ +.+|++++.|++|++||+.++ .....+. +...|.+++|+++ .+|++++.|+.|++||..+
T Consensus 202 ~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEETTSCEEEEEEET
T ss_pred EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEEEeCCCEEEEEEcCC
Confidence 8888887 668888888888888887654 2233332 4478999999965 5899999999999999988
Q ss_pred Ce--EEE-EeecCCC-CeeEEEEcC--CCcEEEEEeCCCcEEEEEcCc
Q 004270 547 LR--MVR-KFEGHTD-RITDFCFSE--DGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 547 ~~--~~~-~~~~h~~-~i~~l~~s~--dg~~l~s~s~dg~i~iwd~~~ 588 (764)
++ ... .+.+|.. .|++++|+| ++++|++++.||+|++||+.+
T Consensus 281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 74 333 3467887 899999999 789999999999999999875
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.6e-41 Score=344.25 Aligned_cols=327 Identities=12% Similarity=0.193 Sum_probs=282.8
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
.++|.+++|+|||+ +++++..++.+..|+........... +|...|.+++|+|++++|++++ |+.|++|+++.....
T Consensus 9 ~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 9 SKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred CCceeEEEECCCCC-EEEeecCCCcEeccccCCccccceec-cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 46799999999999 88887777777777665554444444 7999999999999999999999 999999998875432
Q ss_pred ceee-EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeec
Q 004270 304 PRLL-RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (764)
Q Consensus 304 ~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (764)
.... ....+|...|.+++|+|++++|++++.|+.+++||+.+.......
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------------------------------ 135 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA------------------------------ 135 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE------------------------------
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee------------------------------
Confidence 2221 122378999999999999999999999999999998764311100
Q ss_pred ccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee
Q 004270 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (764)
....+...+.+++++|+++++++++.+|.|++||+.++.....+
T Consensus 136 ------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 136 ------------------------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp ------------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ------------------------------------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence 01134578999999999999999999999999999998887776
Q ss_pred cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEE
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~ 542 (764)
. .|...|.+++|+|+++++++++.||.|++||+.+++.+..+.+...+.+++|+|+++++++++.++.|++|
T Consensus 180 ~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 180 Q--------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp C--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred e--------cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 4 79999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCe
Q 004270 543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622 (764)
Q Consensus 543 d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~ 622 (764)
|+.+++.. .+.+|...|.+++|+|++++|++++.||.|++||+.+++.+....+...+.+++|+|++++|++++.|+ .
T Consensus 252 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~ 329 (337)
T 1gxr_A 252 HVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK-K 329 (337)
T ss_dssp ETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS-C
T ss_pred ECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCC-e
Confidence 99988754 677899999999999999999999999999999999999998877788899999999999999999999 5
Q ss_pred EEEEecc
Q 004270 623 VYLWVNR 629 (764)
Q Consensus 623 i~lW~~~ 629 (764)
|++|++.
T Consensus 330 i~iw~~~ 336 (337)
T 1gxr_A 330 ATVYEVI 336 (337)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999963
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-40 Score=334.71 Aligned_cols=294 Identities=19% Similarity=0.330 Sum_probs=257.6
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
......++.+|...|++++|+|++++|++|+.||.|++|++.+++....+..+ ...|.+++|+|+++ +|++|+.||.|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~~~d~~i 89 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSN-LLVSASDDKTL 89 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC-CCceEEEEEcCCCC-EEEEECCCCEE
Confidence 35677889999999999999999999999999999999999999988888665 78999999999998 99999999999
Q ss_pred EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (764)
Q Consensus 250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (764)
++||+++++.+..+. +|...|.+++|+|++++|++++.|+.|++||+... +.+..+..|..+|.+++|+|+++++
T Consensus 90 ~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 90 KIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp EEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----EEEEEecCCCCcEEEEEEcCCCCEE
Confidence 999999999999888 89999999999999999999999999999998765 5667778899999999999999999
Q ss_pred EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
++++.|+.|++||+.+++....
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~---------------------------------------------------------- 186 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKT---------------------------------------------------------- 186 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEE----------------------------------------------------------
T ss_pred EEEeCCCcEEEEECCCCceeeE----------------------------------------------------------
Confidence 9999999999999754321110
Q ss_pred eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 489 (764)
+. ..+...+..++|+|++++|
T Consensus 187 ----------------------------------------------------~~-------~~~~~~~~~~~~~~~~~~l 207 (312)
T 4ery_A 187 ----------------------------------------------------LI-------DDDNPPVSFVKFSPNGKYI 207 (312)
T ss_dssp ----------------------------------------------------EC-------CSSCCCEEEEEECTTSSEE
T ss_pred ----------------------------------------------------Ee-------ccCCCceEEEEECCCCCEE
Confidence 00 1456678889999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEecCc-c---eEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEE
Q 004270 490 ISAGYHGDIKVWDFKGRDLKSRWEVGC-S---LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF 565 (764)
Q Consensus 490 ~s~~~dg~v~iwd~~~~~~~~~~~~~~-~---i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~ 565 (764)
++++.||.|++||+.+++.+..+..+. . +......+++.++++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 208 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 287 (312)
T 4ery_A 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 287 (312)
T ss_dssp EEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEee
Confidence 999999999999999998888776552 2 233333467889999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEe--CCCcEEEEEcC
Q 004270 566 SEDGKWLLSSG--MDGSLRIWDVI 587 (764)
Q Consensus 566 s~dg~~l~s~s--~dg~i~iwd~~ 587 (764)
+|++++|++++ .|++|++|+..
T Consensus 288 ~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCcCCceEEEEccCCccEEEecCC
Confidence 99999999987 69999999864
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4e-41 Score=344.92 Aligned_cols=298 Identities=18% Similarity=0.228 Sum_probs=234.1
Q ss_pred EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-----------eeeeeeecccccCeeE
Q 004270 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-----------RLQSVIREAHDNAIIS 273 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-----------~~~~~~~~~h~~~v~~ 273 (764)
.+.|++..... ..+...|.+++|+|||+ +|++++ |+++++||.... ....... .|...|.+
T Consensus 16 ~r~w~~~~~~~-----~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 87 (344)
T 4gqb_B 16 AREWNLPPNAP-----ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV-QTEAGVAD 87 (344)
T ss_dssp -------CCSC-----SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE-EESSCEEE
T ss_pred ccccCCCCCCc-----ccccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeeeeccccccCCcceeeeee-ccCCCEEE
Confidence 35677654432 12356799999999999 888777 677888863210 1111111 46778999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccccc
Q 004270 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELS 353 (764)
Q Consensus 274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~ 353 (764)
++|+|++ .|++++.||+|++||++.............+|...|++++|+|+|++|++++.|++|++||+.+++.
T Consensus 88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~----- 161 (344)
T 4gqb_B 88 LTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV----- 161 (344)
T ss_dssp EEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred EEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----
Confidence 9999986 7889999999999999877554444445668999999999999999999999999999998754321
Q ss_pred chhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc
Q 004270 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (764)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s 433 (764)
T Consensus 162 -------------------------------------------------------------------------------- 161 (344)
T 4gqb_B 162 -------------------------------------------------------------------------------- 161 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~ 512 (764)
...+ .+|...|.+++|++++ .++++++.|++|++||+.+++....+
T Consensus 162 -------------------------~~~~--------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 208 (344)
T 4gqb_B 162 -------------------------LSSY--------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI 208 (344)
T ss_dssp -------------------------EEEE--------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred -------------------------EEEE--------cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee
Confidence 1112 3899999999999988 47899999999999999999888776
Q ss_pred ecC---cceEEEEEeec-CCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcC
Q 004270 513 EVG---CSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 513 ~~~---~~i~~~~~s~~-~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~ 587 (764)
... ..+.+++|+|+ +.++++|+.|+.|++||+++++++..+.+|...|++++|+|+| ++|++++.|++|+|||+.
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 433 56899999995 5688999999999999999999999999999999999999998 589999999999999999
Q ss_pred ccceEEEEeeCCceEEEEEcCCCC-eEEEEEeCCCeEEEEeccc
Q 004270 588 LARQIDAIHVDVSITALSLSPNMD-VLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 588 ~~~~~~~~~~~~~v~~l~~sp~g~-~lat~~~d~~~i~lW~~~~ 630 (764)
+++++....+...|++++|+|+++ +|++++.|+ .|++|++..
T Consensus 289 ~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~-~v~~w~v~~ 331 (344)
T 4gqb_B 289 LSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH-QVVHHVVPT 331 (344)
T ss_dssp CCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS-CEEEEECCC
T ss_pred CCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC-eEEEEECCC
Confidence 998776544455699999999986 567888898 599999864
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.9e-40 Score=340.51 Aligned_cols=294 Identities=17% Similarity=0.323 Sum_probs=255.8
Q ss_pred eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
+....+. +|.+.|.+++|+|++++|++++.|++|++||.... ........|...|.+++|+|++.++++++.|+.
T Consensus 55 ~~~~~l~-gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 55 KTRRTLK-GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT----NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred EEEEEec-CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 4455666 89999999999999999999999999999987655 455566788999999999999999999999999
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
+++|++........... ...
T Consensus 130 i~v~~~~~~~~~~~~~~-----------------------------------------------------------~~~- 149 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAK-----------------------------------------------------------KKS- 149 (354)
T ss_dssp EEEEECCCCTTCCSGGG-----------------------------------------------------------CEE-
T ss_pred EEEEEEecccccccccc-----------------------------------------------------------cee-
Confidence 99999864321110000 000
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC--CCCEEEEEeCC
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--TNTLMISAGYH 495 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d 495 (764)
...|...+.+++|+|+++.+++++.||.|++||+.+++....+. +|...|.+++++| ++++|++++.|
T Consensus 150 --~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~g~~l~sgs~D 219 (354)
T 2pbi_B 150 --VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--------GHGADVLCLDLAPSETGNTFVSGGCD 219 (354)
T ss_dssp --EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred --eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence 01355889999999999999999999999999999999888775 8999999999987 56899999999
Q ss_pred CeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC--CCCeeEEEEcCCCcEE
Q 004270 496 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWL 572 (764)
Q Consensus 496 g~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h--~~~i~~l~~s~dg~~l 572 (764)
|.|++||+.+++++..+..+ ..|.+++|+|++.+|++++.|++|++||+.+++.+..+..+ ...+++++|+|+|++|
T Consensus 220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 99999999999998888755 88999999999999999999999999999999888777644 3578999999999999
Q ss_pred EEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 573 LSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 573 ~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
++++.|++|++||+.+++.+..+..|. .|++++|+|||++||+++.|+ .|++|+
T Consensus 300 ~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~-~v~vW~ 354 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH-TLRVWA 354 (354)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS-EEEEEC
T ss_pred EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC-CEEecC
Confidence 999999999999999999998887665 599999999999999999999 699996
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-40 Score=340.42 Aligned_cols=304 Identities=17% Similarity=0.257 Sum_probs=244.5
Q ss_pred eEEEEEcCCCCCeEEEEE-----cC-CCCEEEEEEcCCeEEEEEccCC-------ceEEEEeccCCCCEEEEEEeeCCCC
Q 004270 172 KKLYEFKGWGSSISSCVS-----SP-ALDVVAVGCSDGKIHVHNVRYD-------EELVTFTHSMRGAVTALAFSSDGQP 238 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~-----sp-~~~~la~g~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (764)
++...+++|.+.|++++| ++ ++++|++|+.|++|++||+.++ .....+.. |...|.+++|+|++.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~- 89 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENC- 89 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTT-
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCC-
Confidence 566788999999999999 76 8999999999999999999754 23444544 588999999999998
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (764)
++++|+.|++|++||+++++.+..+. +|...|.+++|+|++++|++++.|++|++||+... .........+|...|.
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEECCTTTSCSSCEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeeeecccCCCceee
Confidence 99999999999999999999998888 89999999999999999999999999999998632 1111122247889999
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270 319 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (764)
Q Consensus 319 ~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (764)
+++|+|++...
T Consensus 167 ~~~~~~~~~~~--------------------------------------------------------------------- 177 (343)
T 2xzm_R 167 CVRYSPIMKSA--------------------------------------------------------------------- 177 (343)
T ss_dssp EEEECCCCCSC---------------------------------------------------------------------
T ss_pred eeeeccccccc---------------------------------------------------------------------
Confidence 99999875200
Q ss_pred CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
. .+.|.+.++++++.||.|++||. .+.....+ .+|...|.
T Consensus 178 --------------------------~-----~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~--------~~h~~~v~ 217 (343)
T 2xzm_R 178 --------------------------N-----KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF--------KAHESNVN 217 (343)
T ss_dssp --------------------------S-----CCCSSCCEEEEEETTSEEEEEET-TTEEEEEE--------ECCSSCEE
T ss_pred --------------------------c-----ccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE--------cCccccce
Confidence 0 01223445566666666666662 22222233 38999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECC-CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE--Eee-
Q 004270 479 GVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR--KFE- 554 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~--~~~- 554 (764)
+++|+|++++|++++.||.|++||+. .......+.....|.+++|+|++.+++++ .|+.|++||+.+++... .+.
T Consensus 218 ~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec
Confidence 99999999999999999999999994 45556666667889999999999988765 57789999998876533 443
Q ss_pred ----------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270 555 ----------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 555 ----------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 590 (764)
+|...|++++|+|+|++|++|+.||+|++|+++++.
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 788899999999999999999999999999988754
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=362.47 Aligned_cols=342 Identities=13% Similarity=0.163 Sum_probs=283.4
Q ss_pred CCEEEEEEeeCCCCEEEEE----------eCCCcEEEEECCCce---eeeeeecccccCeeEEEEecCCCEEEEEcCCCc
Q 004270 225 GAVTALAFSSDGQPLLASG----------ASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLMSASADNS 291 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg----------~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 291 (764)
..|.+++|+|+++.+|++| +.|+.|++||+.++. .+..+ .|...|.+++|+|++++|++++.|+.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEccCCe
Confidence 3688999999998799999 889999999999885 33333 58899999999999999999999999
Q ss_pred EEEEEecCCCCCceeeEeccCCCCCCeeEEEecC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhh
Q 004270 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 370 (764)
Q Consensus 292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (764)
|++|++.........+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.+.........
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------------- 154 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT---------------- 154 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC----------------
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc----------------
Confidence 9999988743333577788899999999999998 89999999999999999876541110000
Q ss_pred hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC-CCEEEEEecCCcEE
Q 004270 371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIE 449 (764)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~~g~i~ 449 (764)
...+.....|...+.+++|+|+ ++++++++.+|.|+
T Consensus 155 -------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 191 (416)
T 2pm9_A 155 -------------------------------------------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS 191 (416)
T ss_dssp -------------------------------------------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred -------------------------------------------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence 0001112345688999999999 78999999999999
Q ss_pred EEECcCCcccceecCccccccccccCcEEEEEECCCC-CEEEEEeCCC---eEEEEECCCC-CeeeeEe--cCcceEEEE
Q 004270 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG---DIKVWDFKGR-DLKSRWE--VGCSLVKIV 522 (764)
Q Consensus 450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg---~v~iwd~~~~-~~~~~~~--~~~~i~~~~ 522 (764)
+||+.++.....+..... ..+|...|.+++|+|++ .++++++.|+ .|++||+.++ +....+. +...+.+++
T Consensus 192 iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 192 IWDLKAKKEVIHLSYTSP--NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD 269 (416)
T ss_dssp EEETTTTEEEEEECCCCC--SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE
T ss_pred EEECCCCCcceEEecccc--ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE
Confidence 999999888777652100 11337899999999997 6899999998 9999999986 5666666 558999999
Q ss_pred Eee-cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC-cEEEEEeCCCcEEEEEcCccceEEEEe----
Q 004270 523 YHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIH---- 596 (764)
Q Consensus 523 ~s~-~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~---- 596 (764)
|+| ++.+|++++.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++++.|+.|++||+.++.......
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~ 349 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence 999 99999999999999999999999999999999999999999999 899999999999999998765332110
Q ss_pred --------------------------------eCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 597 --------------------------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 597 --------------------------------~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
+..++.+++|+|+|++||+++.|+ .|+||++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~-~v~~w~~~~ 414 (416)
T 2pm9_A 350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK-GVSITNPKI 414 (416)
T ss_dssp -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS-CBCCBCCCC
T ss_pred cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC-eEEEEEecc
Confidence 123477999999999999999998 599999763
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.8e-40 Score=338.37 Aligned_cols=323 Identities=15% Similarity=0.220 Sum_probs=274.0
Q ss_pred CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce
Q 004270 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (764)
Q Consensus 136 ~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~ 215 (764)
+...+..++++|++ +.++++..++.+..|+...........+|...|.+++|+|++++|++++ ||.|++||+.+++.
T Consensus 8 ~~~~v~~~~~s~dg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADG--QMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSS--CEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCC--CEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 34556788999999 7888888888787777666555555568999999999999999999999 99999999987753
Q ss_pred ---EEEEe-ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270 216 ---LVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (764)
Q Consensus 216 ---~~~~~-~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 289 (764)
+..+. ..+...|.+++|+|+++ +|++++.||.|++||+.+++ ....+. .|...|.+++|+|+++++++++.|
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d 162 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSD 162 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCC
Confidence 33333 14578999999999998 89999999999999999887 455555 789999999999999999999999
Q ss_pred CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 369 (764)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (764)
+.|++|++... ..+..+.+|...+.+++|+|+++++++++.|+.+++||+.+.+..
T Consensus 163 g~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------------- 218 (337)
T 1gxr_A 163 GNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL-------------------- 218 (337)
T ss_dssp SCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------------------
T ss_pred CcEEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE--------------------
Confidence 99999998765 567777789999999999999999999999999999987543211
Q ss_pred hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~ 449 (764)
T Consensus 219 -------------------------------------------------------------------------------- 218 (337)
T 1gxr_A 219 -------------------------------------------------------------------------------- 218 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCE
Q 004270 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGL 529 (764)
Q Consensus 450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~ 529 (764)
.. ..|...+.+++|+|+++++++++.|+.|++||+.+++......+...+.+++|+|++++
T Consensus 219 ----------~~---------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 219 ----------QQ---------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp ----------EE---------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSE
T ss_pred ----------ee---------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCE
Confidence 11 13556788899999999999999999999999998887666566689999999999999
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 530 la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
|++++.|+.|++||+.+++.+... .|...|++++|+|++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 999999999999999999888554 488999999999999999999999999999963
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-41 Score=351.15 Aligned_cols=318 Identities=18% Similarity=0.313 Sum_probs=265.8
Q ss_pred EEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 004270 115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD 194 (764)
Q Consensus 115 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~ 194 (764)
+..|+...... ..++..|...+..+.|+|++ ++|++|+.||+|++||+.+++.+..++.|...|.+++|+|+++
T Consensus 48 ~~~~~~~~~~~----~~~l~gH~~~V~~~~~sp~~--~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 48 AVSFNPTDLVC----CRTLQGHSGKVYSLDWTPEK--NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp CCCCCCCCCEE----EEEECCCSSCEEEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS
T ss_pred ccccccceeEE----eecccccccEEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC
Confidence 44455554444 67788899999999999999 7899999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCeEEEEEccCCc-------eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee---
Q 004270 195 VVAVGCSDGKIHVHNVRYDE-------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--- 264 (764)
Q Consensus 195 ~la~g~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--- 264 (764)
+|++|+.|+.+++||+.+.. ....+ .+|.+.|.++.|+|++...|++|+.|++|++||+.+++.+..+.
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 99999999999999987532 12223 34588999999999876589999999999999999998877662
Q ss_pred -cccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 265 -EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 265 -~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
.+|...|.+++|++ ++.+|++|+.|++|++||+.... ..+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 37999999999987 78899999999999999987432 45667789999999999999999999999999999999
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
+.++.....+.... .....
T Consensus 278 ~~~~~~~~~~~~~~-------------------------------------------------------------~~~~~ 296 (380)
T 3iz6_a 278 MRTGHQLQVYNREP-------------------------------------------------------------DRNDN 296 (380)
T ss_dssp TTTTEEEEEECCCC-------------------------------------------------------------SSSCC
T ss_pred CCCCcEEEEecccc-------------------------------------------------------------ccccc
Confidence 98765433321100 00011
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
+...+.+++|+|+|+++++|+.||.|++||+..+.....+... ..+|.+.|++++|+|++++|++|+.||+|++|+
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL----QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS----CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc----cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 2245889999999999999999999999999888776655211 137999999999999999999999999999999
Q ss_pred CCCCC
Q 004270 503 FKGRD 507 (764)
Q Consensus 503 ~~~~~ 507 (764)
+...+
T Consensus 373 ~~~~~ 377 (380)
T 3iz6_a 373 FSGHR 377 (380)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 98664
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-39 Score=330.22 Aligned_cols=298 Identities=16% Similarity=0.260 Sum_probs=253.6
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC-----CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-----KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK 204 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~ 204 (764)
..++..|...+..++++|++. +.|++|+.|++|++||+.+ +.++..+++|...|.+++|+|++++|++|+.|++
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~-~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEccccceEEEEEccCCCc-cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 567788999999999999653 6899999999999999863 4567889999999999999999999999999999
Q ss_pred EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC-----
Q 004270 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN----- 279 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~----- 279 (764)
|++||+.+++.+..+..+ ...|.+++|+|++. +|++|+.|+.|++||++. +.+..+. +|...|.++.|+|.
T Consensus 89 v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~-~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGH-KSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLL-GHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp EEEEETTTTEEEEEEECC-SSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECCC-----
T ss_pred EEEEECCCCCeeEEEccC-CCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEe-ccCCcEEEEEEccCCCCCC
Confidence 999999999999988765 88999999999998 999999999999999964 4556666 89999999999985
Q ss_pred -CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhh
Q 004270 280 -EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358 (764)
Q Consensus 280 -~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (764)
+..+++++.|+.|++||+... .....+.+|...|.+++|+|++++|++++.|+.|++||+.+.+....+.
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 235 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----- 235 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-----
T ss_pred CccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----
Confidence 448999999999999998765 5667778999999999999999999999999999999987654332221
Q ss_pred HHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCE
Q 004270 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438 (764)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 438 (764)
....+.+++|+|++.+
T Consensus 236 ----------------------------------------------------------------~~~~v~~~~~sp~~~~ 251 (319)
T 3frx_A 236 ----------------------------------------------------------------AQDEVFSLAFSPNRYW 251 (319)
T ss_dssp ----------------------------------------------------------------CCSCEEEEEECSSSSE
T ss_pred ----------------------------------------------------------------CCCcEEEEEEcCCCCE
Confidence 1267899999999999
Q ss_pred EEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270 439 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (764)
Q Consensus 439 l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 506 (764)
+++++.+ .+++|++..+.....+..........|...+.+++|+|+|++|++++.||.|++||+.++
T Consensus 252 la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 252 LAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9988765 499999987766555432222222356788999999999999999999999999998654
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=360.17 Aligned_cols=334 Identities=12% Similarity=0.179 Sum_probs=277.8
Q ss_pred CCeEEEEEcCCCC-EEEEE----------EcCCeEEEEEccCCc---eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC
Q 004270 182 SSISSCVSSPALD-VVAVG----------CSDGKIHVHNVRYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (764)
Q Consensus 182 ~~i~~~~~sp~~~-~la~g----------~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg 247 (764)
..|.+++|+|+++ +|++| +.||.|++||+.+++ .+..+ .|...|.+++|+|+++ +|++|+.||
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNK-IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSS-CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCC-eEEEEccCC
Confidence 3678899999987 99999 889999999999876 33333 3478999999999999 899999999
Q ss_pred cEEEEECCC----ceeeeeeecccccCeeEEEEecC-CCEEEEEcCCCcEEEEEecCCCC-----CceeeEeccCCCCCC
Q 004270 248 VISIWNLEK----RRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDG-----DPRLLRFRSGHSAPP 317 (764)
Q Consensus 248 ~i~iwd~~~----~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~-----~~~~~~~~~~h~~~v 317 (764)
.|++||+.+ .+....+. +|...|.+++|+|+ +.+|++++.|+.|++||+..... .........+|...|
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999988 34666666 89999999999998 88999999999999999877641 111223446899999
Q ss_pred eeEEEecC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270 318 LCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 318 ~~i~~~~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
.+++|+|+ +.++++++.|+.|++||+.+.+....+...
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----------------------------------------- 207 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT----------------------------------------- 207 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC-----------------------------------------
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc-----------------------------------------
Confidence 99999998 789999999999999998765443332110
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCC---cEEEEECcCCc-ccceecCccccccc
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGG---WIERFNLQSGI-SRGSYLDMSERSNY 471 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g---~i~i~~~~~~~-~~~~~~~~~~~~~~ 471 (764)
....++...+.+++|+|++ .++++++.++ .|++||+.++. ....+ .
T Consensus 208 ---------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~--------~ 258 (416)
T 2pm9_A 208 ---------------------SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL--------N 258 (416)
T ss_dssp ---------------------CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC--------C
T ss_pred ---------------------ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe--------e
Confidence 0011235889999999997 6899999998 99999999864 33333 3
Q ss_pred -cccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecC-CEEEEEeCCCeEEEEEccCC
Q 004270 472 -AHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 472 -~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d~~i~v~d~~~~ 547 (764)
+|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..+ ..+.+++|+|++ .+|++++.|+.|++||+.+.
T Consensus 259 ~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 7999999999999 8999999999999999999999999988765 789999999999 89999999999999999876
Q ss_pred eEEEEee-----------------------------------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc
Q 004270 548 RMVRKFE-----------------------------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589 (764)
Q Consensus 548 ~~~~~~~-----------------------------------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~ 589 (764)
+...... .|..++++++|+|||++|++++.|++|+||++.+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 339 TNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 5322211 16778889999999999999999999999999864
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-39 Score=345.82 Aligned_cols=339 Identities=14% Similarity=0.240 Sum_probs=280.6
Q ss_pred EEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004270 98 LLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177 (764)
Q Consensus 98 ~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 177 (764)
++.++|++|++++.||.|++||+.+.+. ...+..+ ......+++|++ ++|++|+.||.|++||+.+++....+
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~-~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDG----SKMLKRA-DYTAVDTAKLQM--RRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEET----TTTSCSC-CEEEEEEECSSS--CEEEEEETTSCEEEECTTSCEEEEET
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccce----eeEEecC-CceEEEEEecCC--CEEEEEECCCCEEEEeCCCcceeeec
Confidence 4556899999999999999999988776 2233323 444555688998 89999999999999999999999988
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|.+++|+|+++ +|++++.||.|++||++++
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRGR-NVLSASLDGTIRLWECGTG 213 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTTT-EEEEEETTSCEEEEETTTT
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCC
Confidence 999999999999999999999999999999999999999888765 88999999999998 9999999999999999999
Q ss_pred eeeeeeec--ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC
Q 004270 258 RLQSVIRE--AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (764)
Q Consensus 258 ~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 335 (764)
+.+..+.. .|...|.+++|.+++... ....+...+.+++|+|++++|++++.|
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 214 TTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp EEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred ceeEEeecCCCCCCCccEEEEecCCcce-------------------------eeecccCcccceEEcCCCCEEEEEcCC
Confidence 98888762 366788888887764321 123466778888999999999999999
Q ss_pred CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (764)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 415 (764)
|.|++||+.+....
T Consensus 269 g~i~i~d~~~~~~~------------------------------------------------------------------ 282 (420)
T 3vl1_A 269 GVITVHNVFSKEQT------------------------------------------------------------------ 282 (420)
T ss_dssp SCEEEEETTTCCEE------------------------------------------------------------------
T ss_pred CeEEEEECCCCcee------------------------------------------------------------------
Confidence 99999987543211
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEeC
Q 004270 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGY 494 (764)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~ 494 (764)
..+. ..|...|.+++|+|+++ +|++++.
T Consensus 283 --------------------------------------------~~~~-------~~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 283 --------------------------------------------IQLP-------SKFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp --------------------------------------------EEEC-------CTTSSCEEEEEECSSCTTEEEEEET
T ss_pred --------------------------------------------EEcc-------cccCCCceeEEEeCCCCCEEEEEeC
Confidence 1111 26788999999999998 9999999
Q ss_pred CCeEEEEECCCCCe-eeeEec-C-cceEEEEEeecCCEEEEEeCCCeEEEEEccCC---------eEEEEeecCCCCeeE
Q 004270 495 HGDIKVWDFKGRDL-KSRWEV-G-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---------RMVRKFEGHTDRITD 562 (764)
Q Consensus 495 dg~v~iwd~~~~~~-~~~~~~-~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~---------~~~~~~~~h~~~i~~ 562 (764)
||.|++||+.+++. +..+.. + ..+.++ +++++++|++++.|+.|++||+... .....+.+|.+.|.+
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 390 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQ 390 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCE
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEE
Confidence 99999999998754 666654 3 667777 5568899999999999999998763 223346678899999
Q ss_pred EEEcCCCc---EEEEEeCCCcEEEEEcCc
Q 004270 563 FCFSEDGK---WLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 563 l~~s~dg~---~l~s~s~dg~i~iwd~~~ 588 (764)
++|+|+++ .|++++.+|.+.+|++++
T Consensus 391 ~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 391 FCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 99999999 778888899999999874
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.1e-39 Score=331.20 Aligned_cols=297 Identities=21% Similarity=0.353 Sum_probs=252.7
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCc-----eEEEEeccCCCCEEEEEEeeCCCCEEEE
Q 004270 169 STKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE-----ELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (764)
Q Consensus 169 ~~~~~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~v~~l~fs~d~~~~l~s 242 (764)
++.++..++++|.+.|++++|+|+ +++||+|+.||+|+|||+.+++ ....+.. |...|.+++|+|+++ +|++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~-~l~s 103 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQ-FALS 103 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSS-EEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCC-EEEE
Confidence 344567789999999999999998 6899999999999999998654 3344444 588999999999999 9999
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (764)
|+.|+.|++|+........... .+...+..+.+++++++|++++.|+.+++|+.... ........+|...+..++|
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~---~~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV---CKYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC---EEEEECSSSCSSCEEEEEE
T ss_pred EcccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCC---ceEEEEeccccCcccceEE
Confidence 9999999999999998888777 78889999999999999999999999999986543 2445556789999999999
Q ss_pred ecCC--CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 323 YANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 323 ~~~~--~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
++++ ..+++++.|+.|++||+.+..
T Consensus 180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~----------------------------------------------------- 206 (340)
T 4aow_A 180 SPNSSNPIIVSCGWDKLVKVWNLANCK----------------------------------------------------- 206 (340)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTTE-----------------------------------------------------
T ss_pred ccCCCCcEEEEEcCCCEEEEEECCCCc-----------------------------------------------------
Confidence 8754 567788888888888764322
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 480 (764)
....+ .+|.+.|+++
T Consensus 207 ---------------------------------------------------------~~~~~--------~~h~~~v~~~ 221 (340)
T 4aow_A 207 ---------------------------------------------------------LKTNH--------IGHTGYLNTV 221 (340)
T ss_dssp ---------------------------------------------------------EEEEE--------CCCSSCEEEE
T ss_pred ---------------------------------------------------------eeeEe--------cCCCCcEEEE
Confidence 11222 2789999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee------
Q 004270 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE------ 554 (764)
Q Consensus 481 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~------ 554 (764)
+|+|++++|++++.||.|++||+.+.+.+..+..+..+.+++++|++.++ +++.|+.|++||++++..+..+.
T Consensus 222 ~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC----
T ss_pred EECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceee
Confidence 99999999999999999999999999999999999999999999987655 55679999999999988776654
Q ss_pred ---cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270 555 ---GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 555 ---~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 590 (764)
+|...|++++|+|||++|++|+.||+|+|||+.+|.
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 688999999999999999999999999999999885
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=330.98 Aligned_cols=324 Identities=15% Similarity=0.243 Sum_probs=250.1
Q ss_pred eeeEecCCc-cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEE--E-EcCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 004270 130 VGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY--E-FKGWGSSISSCVSSPALDVVAVGCSDGKI 205 (764)
Q Consensus 130 ~~~~~~~~~-~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~-~~~h~~~i~~~~~sp~~~~la~g~~dg~i 205 (764)
+.++..|.. .+..++|+|++ ++|++|+.|++|++||+.+++... . ..+|...|.+++|+|++++|++|+.|+.|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g--~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAG--TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTS--SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecCCCCCcEEEEEECCCC--CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 566666766 77889999999 789999999999999998886443 2 36899999999999999999999999999
Q ss_pred EEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---eeeeeecccccCeeEEEEecCC
Q 004270 206 HVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANE 280 (764)
Q Consensus 206 ~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~l~~~~~~ 280 (764)
++|++.++. .+..+.. |...|.+++|+|+++ +|++|+.|+.|++||+.++. .+..+. +|...|.+++|+|++
T Consensus 86 ~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQ 162 (345)
T ss_dssp EEEEECCC-EEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSS
T ss_pred EEEEccCCCeEEEEEccC-CCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCC
Confidence 999998774 4555554 488999999999999 99999999999999998763 344555 899999999999999
Q ss_pred CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHH
Q 004270 281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360 (764)
Q Consensus 281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 360 (764)
++|++++.|++|++|+..... ......+.+|...|.+++|+|++++|++++.|++|++|+.........+...
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~----- 235 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS----- 235 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----
T ss_pred CEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee-----
Confidence 999999999999999987542 2345677899999999999999999999999999999997543322111000
Q ss_pred HhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEE
Q 004270 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 440 (764)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 440 (764)
.... .|. ........|...|.+++|+|++..++
T Consensus 236 ------------------------------------~~~~---~~~--------~~~~~~~~h~~~v~~v~~~~~~~~l~ 268 (345)
T 3fm0_A 236 ------------------------------------GSDP---SWK--------CICTLSGFHSRTIYDIAWCQLTGALA 268 (345)
T ss_dssp ---------------------------------------C---EEE--------EEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred ------------------------------------ccCC---ccc--------eeEEecCCCCCcEEEEEEecCCCEEE
Confidence 0000 000 00011113567899999999999999
Q ss_pred EEecCCcEEEEECcCCcccceecC-ccccccccccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270 441 LGTAGGWIERFNLQSGISRGSYLD-MSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 441 ~g~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~ 512 (764)
+++.|+.|++|+...+........ .......+|...|++++|+|++ .+|++++.||+|++|++.+++.....
T Consensus 269 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 269 TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 999999999999876542211000 0001124799999999999988 59999999999999999987765443
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-38 Score=335.25 Aligned_cols=290 Identities=16% Similarity=0.312 Sum_probs=244.8
Q ss_pred CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc------------------cCeeEEEEecCCCEEE
Q 004270 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD------------------NAIISLHFFANEPVLM 284 (764)
Q Consensus 223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~------------------~~v~~l~~~~~~~~l~ 284 (764)
|.+.|.+++|+|||+ +|++|+ ++.+++|++.+++.+..+. .|. ..|.+++|+|++++|+
T Consensus 63 h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 63 HTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 588999999999999 888876 7899999999998877765 332 2489999999999999
Q ss_pred EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270 285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364 (764)
Q Consensus 285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (764)
+++.|+.|++||+... +.+..+.+|...|.+++|+|++++|++++.|+++++||+.++.....+.
T Consensus 140 s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----------- 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----------- 204 (393)
T ss_dssp EEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----------
T ss_pred EEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-----------
Confidence 9999999999998765 6777888999999999999999999999999999999987654322211
Q ss_pred cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEe
Q 004270 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGT 443 (764)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~ 443 (764)
+...+.+++++| +|+++++|+
T Consensus 205 ----------------------------------------------------------~~~~v~~~~~~~~~~~~l~~~s 226 (393)
T 1erj_A 205 ----------------------------------------------------------IEDGVTTVAVSPGDGKYIAAGS 226 (393)
T ss_dssp ----------------------------------------------------------CSSCEEEEEECSTTCCEEEEEE
T ss_pred ----------------------------------------------------------cCCCcEEEEEECCCCCEEEEEc
Confidence 125688999999 899999999
Q ss_pred cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC------------eeee
Q 004270 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------------LKSR 511 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~------------~~~~ 511 (764)
.||.|++||+.++.....+.... ....+|...|.+++|+|++++|++++.|+.|++||+.+.. +...
T Consensus 227 ~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 305 (393)
T 1erj_A 227 LDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305 (393)
T ss_dssp TTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred CCCcEEEEECCCCcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence 99999999999987766552111 1123799999999999999999999999999999997642 3334
Q ss_pred Eec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC------CCcEEEEEeCCCcEEEE
Q 004270 512 WEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE------DGKWLLSSGMDGSLRIW 584 (764)
Q Consensus 512 ~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~------dg~~l~s~s~dg~i~iw 584 (764)
+.. ...|.+++++|++.+|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|++ ++++|++|+.||+|++|
T Consensus 306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence 443 47899999999999999999999999999999999999999999999999986 68999999999999999
Q ss_pred EcCcc
Q 004270 585 DVILA 589 (764)
Q Consensus 585 d~~~~ 589 (764)
++...
T Consensus 386 ~~~~~ 390 (393)
T 1erj_A 386 KYKKI 390 (393)
T ss_dssp EEEEC
T ss_pred ccccc
Confidence 98653
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-38 Score=324.66 Aligned_cols=290 Identities=20% Similarity=0.358 Sum_probs=254.6
Q ss_pred eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
.....+. +|...|++++|+|++++|++++.|+.|++|++... .....+.+|...|.+++|+|++++|++++.|+.
T Consensus 14 ~~~~~~~-gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 14 ALKFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeEEEEc-ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc----ccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 4445555 89999999999999999999999999999987655 466777899999999999999999999999999
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
|++||+.+++....+
T Consensus 89 i~vwd~~~~~~~~~~----------------------------------------------------------------- 103 (312)
T 4ery_A 89 LKIWDVSSGKCLKTL----------------------------------------------------------------- 103 (312)
T ss_dssp EEEEETTTCCEEEEE-----------------------------------------------------------------
T ss_pred EEEEECCCCcEEEEE-----------------------------------------------------------------
Confidence 999998765432221
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 497 (764)
..|...+.+++|+|+++++++|+.||.|++||+.++.....+. .|...|.+++|+|+++++++++.||.
T Consensus 104 ---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 104 ---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--------AHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec--------CCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 1355789999999999999999999999999999998877764 89999999999999999999999999
Q ss_pred EEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeE--EEE-cCCCcEE
Q 004270 498 IKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD--FCF-SEDGKWL 572 (764)
Q Consensus 498 v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~--l~~-s~dg~~l 572 (764)
|++||+.+++.+..+... .++..++|+|++++|++++.|+.|++||+.+++.+..+.+|...+.. ..+ .+++++|
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 999999999888776433 67999999999999999999999999999999999999999866433 233 4688999
Q ss_pred EEEeCCCcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEE--eCCCeEEEEecc
Q 004270 573 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAH--VDQNGVYLWVNR 629 (764)
Q Consensus 573 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~--~d~~~i~lW~~~ 629 (764)
++++.||.|++||+.+++++..+..|.. |.+++|+|++.+|++++ .|+ .|++|+.+
T Consensus 253 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~-~i~~W~~d 311 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK-TIKLWKSD 311 (312)
T ss_dssp EECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC-CEEEEECC
T ss_pred EEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc-cEEEecCC
Confidence 9999999999999999999999987654 99999999999999998 466 69999864
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-40 Score=354.37 Aligned_cols=343 Identities=15% Similarity=0.158 Sum_probs=281.9
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004270 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262 (764)
Q Consensus 183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~ 262 (764)
.+++++|+|++++|++|+.||.|++||+.+++....+..+ ..+....|+++++ +|++|+.||.|++||+.+++....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeee
Confidence 3457899999999999999999999999887665544432 4455567899998 999999999999999999988877
Q ss_pred eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 263 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
+. +|.+.|.+++|+|++++|++++.|+.|++||++.. ..+..+.+|...|.+++|+|++++|++++.|+.+++||
T Consensus 135 ~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 135 DQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG----SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp TT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 76 89999999999999999999999999999998766 45566679999999999999999999999999999999
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
+.+++....+.. ...
T Consensus 210 ~~~~~~~~~~~~-----------------------------------------------------------------~~~ 224 (420)
T 3vl1_A 210 CGTGTTIHTFNR-----------------------------------------------------------------KEN 224 (420)
T ss_dssp TTTTEEEEEECB-----------------------------------------------------------------TTB
T ss_pred CCCCceeEEeec-----------------------------------------------------------------CCC
Confidence 877654433221 112
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
+...+.++++.+.+... .. ..|...+.+++|+|++++|++++.||.|++||
T Consensus 225 ~~~~v~~~~~~~~~~~~---------------------~~--------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 225 PHDGVNSIALFVGTDRQ---------------------LH--------EISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp TTCCEEEEEEEECCCSS---------------------CG--------GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred CCCCccEEEEecCCcce---------------------ee--------ecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 34677777777654321 00 25677889999999999999999999999999
Q ss_pred CCCCCeeeeEec--CcceEEEEEeecCC-EEEEEeCCCeEEEEEccCCe-EEEEeec-CCCCeeEEEEcCCCcEEEEEeC
Q 004270 503 FKGRDLKSRWEV--GCSLVKIVYHRVNG-LLATVADDLVIRLFDVVALR-MVRKFEG-HTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 503 ~~~~~~~~~~~~--~~~i~~~~~s~~~~-~la~~~~d~~i~v~d~~~~~-~~~~~~~-h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
+.+++....+.. ...+.+++|+|++. +|++|+.||.|++||+.+++ ++..+.+ |...|+++.| +++++|++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~ 354 (420)
T 3vl1_A 276 VFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGF 354 (420)
T ss_dssp TTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETT
T ss_pred CCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecC
Confidence 999988777754 37899999999999 99999999999999999875 4677776 6677888855 57899999999
Q ss_pred CCcEEEEEcCccc----------eEEEEeeCCceEEEEEcCCCC---eEEEEEeCCCeEEEEecc
Q 004270 578 DGSLRIWDVILAR----------QIDAIHVDVSITALSLSPNMD---VLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 578 dg~i~iwd~~~~~----------~~~~~~~~~~v~~l~~sp~g~---~lat~~~d~~~i~lW~~~ 629 (764)
|+.|++||+.+.. ..........+.+++|+|++. .|++++.++ .+.+|++.
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g-~~~~~~~~ 418 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN-FCALYNLS 418 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT-EEEEEESC
T ss_pred CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc-eEEEEecc
Confidence 9999999998732 112223345699999999999 777777787 59999975
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-38 Score=321.97 Aligned_cols=254 Identities=16% Similarity=0.202 Sum_probs=208.0
Q ss_pred ceEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeE-ec-CCccccEEEEeCCCCCCEEEEEeCCC
Q 004270 84 HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHV-KL-DDKFTPTCIMHPDTYLNKVIVGSQEG 161 (764)
Q Consensus 84 ~~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~-~~-~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (764)
+.+.++.+|.++|.++.+++++|++++.|++|++||+..+... ....+ .. |...+..++|+|++ +.|++|+.|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~--~~~~~~~~~h~~~v~~v~~sp~~--~~las~s~D~ 80 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFT--LIDVLDETAHKKAIRSVAWRPHT--SLLAAGSFDS 80 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCE--EEEEECTTCCCSCEEEEEECTTS--SEEEEEETTS
T ss_pred ccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeE--EEEEEecCCccCCEEEEEECCCC--CEEEEEeCCC
Confidence 3466799999999999999889999999999999999875421 13333 23 67778889999999 8999999999
Q ss_pred cEEEEeCC-------CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC----ceEEEEeccCCCCEEEE
Q 004270 162 SLQLWNIS-------TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD----EELVTFTHSMRGAVTAL 230 (764)
Q Consensus 162 ~i~iwd~~-------~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l 230 (764)
+|++||+. +.+.+..+.+|...|.+++|+|++++||+|+.|+.|++||+... +.+..+.. |...|.++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v 159 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKHV 159 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-CSSCEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-CCCceEEE
Confidence 99999984 34678889999999999999999999999999999999999532 34455554 48899999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCCCC---
Q 004270 231 AFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGD--- 303 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~--- 303 (764)
+|+|++. +|++|+.|+.|++||..++ +++..+. +|.+.|.+++|+|+ +..|++++.|++|++|++......
T Consensus 160 ~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 160 IWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 9999998 9999999999999998766 5667777 89999999999998 678999999999999998754221
Q ss_pred -ceeeEeccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 304 -PRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 304 -~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
......+.+ |...|.+++|++++ +|++++.||.|++|+...
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 123344444 89999999999665 899999999999999753
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.1e-38 Score=334.92 Aligned_cols=323 Identities=18% Similarity=0.320 Sum_probs=282.4
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
..+....+.+|.+.+.. ++++++++|++|+.||.|++||+.+++.+..+..+ .+.|.+++|+ +. ++++|+.||.|
T Consensus 107 ~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~-~l~s~~~dg~i 181 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMR--DN-IIISGSTDRTL 181 (445)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEEEEE--TT-EEEEEETTSCE
T ss_pred CcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCC-CCCEEEEEec--CC-EEEEEeCCCeE
Confidence 34456778999887643 35557899999999999999999999999888765 8899999998 44 89999999999
Q ss_pred EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (764)
Q Consensus 250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (764)
++||+.+++.+..+. +|...|.++.|+ ++.+++++.|+.|++||+... ..+..+.+|...+.++++ +++++
T Consensus 182 ~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~--~~~~l 252 (445)
T 2ovr_B 182 KVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG----QCLHVLMGHVAAVRCVQY--DGRRV 252 (445)
T ss_dssp EEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC----CEEEEEECCSSCEEEEEE--CSSCE
T ss_pred EEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC----cEEEEEcCCcccEEEEEE--CCCEE
Confidence 999999999999988 899999999996 568999999999999998765 567777899999999999 78899
Q ss_pred EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
++++.||.|++||+.++.....+
T Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~--------------------------------------------------------- 275 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPETETCLHTL--------------------------------------------------------- 275 (445)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEE---------------------------------------------------------
T ss_pred EEEcCCCEEEEEECCCCcEeEEe---------------------------------------------------------
Confidence 99999999999998765433221
Q ss_pred eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 489 (764)
..|...+.++++ +++++++|+.||.|++||+.++.....+. +|...+.++.++ ++++
T Consensus 276 -----------~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 276 -----------QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT--------GHQSLTSGMELK--DNIL 332 (445)
T ss_dssp -----------CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSCEEEEEEE--TTEE
T ss_pred -----------cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc--------CCcccEEEEEEe--CCEE
Confidence 134578888888 89999999999999999999998887775 899999988885 6699
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEec----CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEe-----ecCCCCe
Q 004270 490 ISAGYHGDIKVWDFKGRDLKSRWEV----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-----EGHTDRI 560 (764)
Q Consensus 490 ~s~~~dg~v~iwd~~~~~~~~~~~~----~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~-----~~h~~~i 560 (764)
++++.||.|++||+.+++.+..+.. ...|.+++++ ++++++|+.||.|++||+.+++.+..+ .+|.+.|
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v 410 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 410 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceE
Confidence 9999999999999999999988874 4789999985 689999999999999999999999888 4788999
Q ss_pred eEEEEcCCCcEEEEEeCCCc----EEEEEcCc
Q 004270 561 TDFCFSEDGKWLLSSGMDGS----LRIWDVIL 588 (764)
Q Consensus 561 ~~l~~s~dg~~l~s~s~dg~----i~iwd~~~ 588 (764)
++++|+|++.+|++++.||+ |.|||+..
T Consensus 411 ~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 411 WRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999999998 99999874
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-37 Score=327.63 Aligned_cols=318 Identities=14% Similarity=0.233 Sum_probs=253.9
Q ss_pred cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-----------
Q 004270 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS----------- 182 (764)
Q Consensus 114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~----------- 182 (764)
...+|+..........+.....|...+..++|+|++ ++|++|+ ++.+++|++.+++.+..+..|..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg--~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 117 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG--EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 117 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS--SEEEEEC-BSCEEEEETTTCCEEEEECC--------------
T ss_pred eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCC--CEEEEEc-CCcEEEEEecCCCEEEEecCcccccccccccccc
Confidence 344666554433211122222477888899999999 7888876 68899999999999988876542
Q ss_pred -------CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270 183 -------SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (764)
Q Consensus 183 -------~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~ 255 (764)
.|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|.+++|+|+++ +|++|+.|+.|++||++
T Consensus 118 ~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-CCCEEEEEEcCCCC-EEEEecCCCcEEEEECC
Confidence 3999999999999999999999999999999988888765 88999999999999 89999999999999999
Q ss_pred CceeeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEec-------cCCCCCCeeEEEecCCC
Q 004270 256 KRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-------SGHSAPPLCIRFYANGR 327 (764)
Q Consensus 256 ~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-------~~h~~~v~~i~~~~~~~ 327 (764)
+++....+. +...+.+++|+| ++.+|++++.|+.|++||+.... .+..+ .+|...|.+++|+|+++
T Consensus 196 ~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 196 TGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp TTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEEECTTSS
T ss_pred CCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 998887775 677899999999 89999999999999999987652 33322 57999999999999999
Q ss_pred EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (764)
Q Consensus 328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (764)
+|++++.|++|++||+............. .
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-----------------------------------------~--------- 299 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPN-----------------------------------------S--------- 299 (393)
T ss_dssp EEEEEETTSEEEEEEC----------------------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCC-----------------------------------------C---------
Confidence 99999999999999987543221110000 0
Q ss_pred cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC---
Q 004270 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS--- 484 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--- 484 (764)
........+|...+.+++++|++.++++|+.||.|++||..++.....+. +|...|.+++|++
T Consensus 300 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--------~h~~~v~~v~~~~~~~ 365 (393)
T 1erj_A 300 ------GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--------GHRNSVISVAVANGSS 365 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECSSCT
T ss_pred ------CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--------CCCCCEEEEEecCCcC
Confidence 00000112466889999999999999999999999999999998887775 8999999999986
Q ss_pred ---CCCEEEEEeCCCeEEEEECCCC
Q 004270 485 ---TNTLMISAGYHGDIKVWDFKGR 506 (764)
Q Consensus 485 ---~~~~l~s~~~dg~v~iwd~~~~ 506 (764)
++++|++++.||+|++|++...
T Consensus 366 ~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 366 LGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCCCCEEEEECCCCcEEECccccc
Confidence 6789999999999999997643
No 50
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.9e-38 Score=321.69 Aligned_cols=304 Identities=17% Similarity=0.243 Sum_probs=244.9
Q ss_pred EEEecccccceEEEEE--------eCCEEEEEecCCcEEEEEccCCccc---ccceeeEecCCccccEEEEeCCCCCCEE
Q 004270 86 VATWSRHSAKVNLLLL--------FGEHILSIDIDGNMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKV 154 (764)
Q Consensus 86 ~~~~~~h~~~v~~l~~--------~g~~l~s~~~dg~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l 154 (764)
...+.||.+.|+++.+ ++++|++++.|++|++||+.+.+.. ..+...+..|...+..++++|++ .++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~l 91 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--CFA 91 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--TEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--CEE
Confidence 4568999999999987 7889999999999999999865431 22355677788888999999999 799
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe--ccCCCCEEEEEE
Q 004270 155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAF 232 (764)
Q Consensus 155 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~f 232 (764)
++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.. ....... ..|...|.+++|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 9999999999999999999999999999999999999999999999999999999983 3333332 245788999999
Q ss_pred eeCCC---------CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 233 SSDGQ---------PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 233 s~d~~---------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
+|++. .++++++.||.|++||. ..+....+. +|...|.+++|+|++++|++++.|+.|++||+.....
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~- 247 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY- 247 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-
Confidence 99872 38999999999999994 556666776 8999999999999999999999999999999854322
Q ss_pred ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc--cccchhhhHHHhhccchhhhhccCceeEeee
Q 004270 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR--ELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (764)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (764)
....+ .+...|.+++|+|++.++++ +.|+.+++|++.+..... .+....
T Consensus 248 --~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~------------------------- 298 (343)
T 2xzm_R 248 --PQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEP------------------------- 298 (343)
T ss_dssp --CSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCS-------------------------
T ss_pred --cceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCc-------------------------
Confidence 12222 34567999999999987765 457789999987654322 110000
Q ss_pred cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC
Q 004270 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (764)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~ 456 (764)
........+|...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 299 --------------------------------~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 299 --------------------------------ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp --------------------------------GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred --------------------------------chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 0000111245678999999999999999999999999998765
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.9e-37 Score=332.27 Aligned_cols=326 Identities=17% Similarity=0.262 Sum_probs=279.6
Q ss_pred eEEEEEcCCCCCe-EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEE
Q 004270 172 KKLYEFKGWGSSI-SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250 (764)
Q Consensus 172 ~~~~~~~~h~~~i-~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~ 250 (764)
.....+.+|...+ .++.+ ++++|++|+.||.|++||+.+++.+..+..+ .+.|.+++|++++ ++++|+.||.|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~~--~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG--ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSTT--EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-CcCEEEEEEcCCC--EEEEEeCCCCEE
Confidence 4567889998885 55555 5679999999999999999999999988765 8999999999887 799999999999
Q ss_pred EEECCCceeeeeeecccccCeeEEEEe--cCCCEEEEEcCCCcEEEEEecCCCCCce-------------------eeEe
Q 004270 251 IWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMWIFDTTDGDPR-------------------LLRF 309 (764)
Q Consensus 251 iwd~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~~ 309 (764)
+||+++++.+..+. +|.+.|.+++|+ ++++++++++.|+.|++|++........ ....
T Consensus 187 vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 187 VWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 99999999998888 899999999999 5778999999999999999886543211 3556
Q ss_pred ccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270 310 RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (764)
..+|...+.++ +++++++++++.|+.|++||+.+.+....+
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~------------------------------------- 306 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL------------------------------------- 306 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE-------------------------------------
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe-------------------------------------
Confidence 77888888877 567889999999999999998765433221
Q ss_pred cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
.+|...+.+++++|+++++++|+.||.|++||+.++.....+.
T Consensus 307 -------------------------------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~------ 349 (464)
T 3v7d_B 307 -------------------------------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ------ 349 (464)
T ss_dssp -------------------------------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC------
T ss_pred -------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe------
Confidence 1455889999999999999999999999999999999888875
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~ 549 (764)
+|...|.+++++ ++++++++.||.|++||+.++...........+..++++++++++++++ |+.|++||+.+++.
T Consensus 350 --~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 350 --GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp --CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred --CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 899999999998 5799999999999999999998888888888899999999999999998 89999999999999
Q ss_pred EEE-eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEE
Q 004270 550 VRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (764)
Q Consensus 550 ~~~-~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd 585 (764)
+.. +.+|...|.+++|+ +..++++++.||.+.+|-
T Consensus 425 ~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 425 VHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 986 67899999999997 445555666777655543
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=323.49 Aligned_cols=306 Identities=17% Similarity=0.261 Sum_probs=264.7
Q ss_pred EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (764)
..+.. |.+.|++++|+|+++ +|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|++++.|+.|++|+
T Consensus 26 ~~l~~-h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 26 IKLTG-HERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEC-CSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEEEE-eeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 33444 489999999999999 99999999999999999999999988 8999999999999999999999999999999
Q ss_pred ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC-----CcEEEEEeecccccccccchhhhHHHhhccchhhhh
Q 004270 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (764)
+... ..+..+. |...+.+++|+|+++++++++.+ +.+++||+........+.....
T Consensus 103 ~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-------------- 163 (369)
T 3zwl_B 103 VSNG----QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE-------------- 163 (369)
T ss_dssp TTTC----CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS--------------
T ss_pred CCCC----cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc--------------
Confidence 8765 3444444 88899999999999999999999 9999999987654433221000
Q ss_pred ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 004270 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451 (764)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~ 451 (764)
.+ ...+. .......+.+++++|+++++++|+.+|.|++|
T Consensus 164 --~~--------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 164 --EP--------------------------------------IHKII-THEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp --SC--------------------------------------SEEEE-CCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred --ce--------------------------------------eeecc-CCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 00 00000 00112389999999999999999999999999
Q ss_pred ECcC-CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEE
Q 004270 452 NLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530 (764)
Q Consensus 452 ~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l 530 (764)
|+.+ +.....+. .|...|.+++|+|++++|++++.||.|++||+.+++.+..+.....+..++|+|+++++
T Consensus 203 d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 274 (369)
T 3zwl_B 203 DVSNNYEYVDSID--------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFI 274 (369)
T ss_dssp ETTTTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEE
T ss_pred ECCCCcEeEEEEe--------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceE
Confidence 9998 56665554 79999999999999999999999999999999999999999988999999999999999
Q ss_pred EEEeCCC--------------eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270 531 ATVADDL--------------VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593 (764)
Q Consensus 531 a~~~~d~--------------~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~ 593 (764)
++++.++ .+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++.++....
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp EEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred EEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 9999988 89999999999999999999999999999999999999999999999998765443
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.4e-37 Score=327.42 Aligned_cols=329 Identities=19% Similarity=0.313 Sum_probs=284.2
Q ss_pred eEEEecccccc-eEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270 85 QVATWSRHSAK-VNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (764)
Q Consensus 85 ~~~~~~~h~~~-v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (764)
....+.+|.+. +.++.++|++|++++.||+|++||+.+++. +..+..|...+..+.++ + +.+++|+.||.|
T Consensus 110 ~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~--~--~~l~s~~~dg~i 181 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC----LRTLVGHTGGVWSSQMR--D--NIIISGSTDRTL 181 (445)
T ss_dssp CCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE----EEECCCCSSCEEEEEEE--T--TEEEEEETTSCE
T ss_pred eeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcE----EEEEcCCCCCEEEEEec--C--CEEEEEeCCCeE
Confidence 35568999886 578889999999999999999999999887 67777788888888887 3 579999999999
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg 243 (764)
++||+.+++.+..+.+|...|.+++++ ++.+++|+.||.|++||+.+++.+..+..+ ...|.+++| ++. ++++|
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--~~~-~l~~~ 255 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY--DGR-RVVSG 255 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE--CSS-CEEEE
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE--CCC-EEEEE
Confidence 999999999999999999999999996 468999999999999999999999888765 889999999 666 89999
Q ss_pred eCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
+.||.|++||+++++.+..+. +|...|.++.| ++.++++++.|+.|++||+... ..+..+.+|...+.++.++
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELK 328 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEE
T ss_pred cCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC----CEEEEEcCCcccEEEEEEe
Confidence 999999999999999999988 89999999999 7889999999999999998765 5677778999999888774
Q ss_pred cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
++++++++.||.|++||+.+++....+.
T Consensus 329 --~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------------------------------------------- 356 (445)
T 2ovr_B 329 --DNILVSGNADSTVKIWDIKTGQCLQTLQ-------------------------------------------------- 356 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------
T ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEEc--------------------------------------------------
Confidence 6699999999999999987654433321
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
....+...+.+++++ ++++++|+.||.|++||+.+++....+... ....|.+.|.+++|+
T Consensus 357 ---------------~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 357 ---------------GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTL---ESGGSGGVVWRIRAS 416 (445)
T ss_dssp ---------------STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEEC---TTGGGTCEEEEEEEC
T ss_pred ---------------cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecc---ccCCCCceEEEEEec
Confidence 112355789999985 689999999999999999999887766211 012688999999999
Q ss_pred CCCCEEEEEeCCCe----EEEEECCCC
Q 004270 484 STNTLMISAGYHGD----IKVWDFKGR 506 (764)
Q Consensus 484 ~~~~~l~s~~~dg~----v~iwd~~~~ 506 (764)
|++.++++++.||+ |.+||+...
T Consensus 417 ~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 417 NTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999999998 999998753
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=336.14 Aligned_cols=360 Identities=15% Similarity=0.207 Sum_probs=261.5
Q ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCceEEEEe------------ccCCC
Q 004270 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFT------------HSMRG 225 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~------------~~~~~ 225 (764)
.++.+++|+++.++....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. ..|..
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 345678898888888899999999999999999 99999999999999999999887655544 23588
Q ss_pred CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC---CEEEEEcCCCcEEEEEecCCCC
Q 004270 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDG 302 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~d~~i~vw~~~~~~~ 302 (764)
.|.+++|+|++..+|++++.||.|++||+.+++....+. +...+.++.|++.+ .++++++.|+.|++|++...
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-- 176 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-- 176 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--
Confidence 999999999444489999999999999999999888876 78899999999854 49999999999999998765
Q ss_pred CceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270 303 DPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (764)
Q Consensus 303 ~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (764)
..+..+.+|...|.+++|+|+++ .+++++.||.|++||++...........
T Consensus 177 --~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------- 228 (408)
T 4a11_B 177 --SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ-------------------------- 228 (408)
T ss_dssp --CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT--------------------------
T ss_pred --ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc--------------------------
Confidence 45666778999999999999988 5889999999999998754321110000
Q ss_pred cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (764)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~ 461 (764)
+... .......
T Consensus 229 -----------------------------------------~~~~---------------------------~~~~~~~- 239 (408)
T 4a11_B 229 -----------------------------------------HNGK---------------------------KSQAVES- 239 (408)
T ss_dssp -----------------------------------------TTTC---------------------------SCCCTTT-
T ss_pred -----------------------------------------cccc---------------------------cceeecc-
Confidence 0000 0000011
Q ss_pred ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC------cceEEEEEeecCCEEEEEeC
Q 004270 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVAD 535 (764)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~~ 535 (764)
....|...|.+++|+|++++|++++.||.|++||+.+++........ ..+........+..+++++.
T Consensus 240 -------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 240 -------ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp -------SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred -------ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 11378899999999999999999999999999999988765544321 22223333344667778888
Q ss_pred CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcC-CCCeEE
Q 004270 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP-NMDVLA 614 (764)
Q Consensus 536 d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~la 614 (764)
++.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+......... ..+.+ ....+.
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 390 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWS 390 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------
T ss_pred CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeec
Confidence 999999999999999999999999999999999999999999999999999999888766544333 23333 233344
Q ss_pred EEEeCCCeEEEEecc
Q 004270 615 TAHVDQNGVYLWVNR 629 (764)
Q Consensus 615 t~~~d~~~i~lW~~~ 629 (764)
+++.++ .+++|+++
T Consensus 391 ~~~~~~-~~~~W~~~ 404 (408)
T 4a11_B 391 SSDEEG-GTSAWSHP 404 (408)
T ss_dssp ---------------
T ss_pred ccCccC-ceeecCCc
Confidence 455555 69999876
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-39 Score=345.16 Aligned_cols=309 Identities=10% Similarity=0.095 Sum_probs=230.0
Q ss_pred EEEEEEcCCeEEEEEccCCceE----EEEeccCCCCEEEEEEeeC------CCCEEEEEeCCCcEEEEECCCceee----
Q 004270 195 VVAVGCSDGKIHVHNVRYDEEL----VTFTHSMRGAVTALAFSSD------GQPLLASGASSGVISIWNLEKRRLQ---- 260 (764)
Q Consensus 195 ~la~g~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~l~fs~d------~~~~l~sg~~dg~i~iwd~~~~~~~---- 260 (764)
.+++++.|++|+|||+.+++.. ..+. +|.+.|.+++|+|+ +. +||+++.||+|++||+.+++..
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccc
Confidence 3444567899999999887743 2233 34788999999997 34 8999999999999999876421
Q ss_pred -------eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE--EEecCC-CEEE
Q 004270 261 -------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI--RFYANG-RHIL 330 (764)
Q Consensus 261 -------~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i--~~~~~~-~~l~ 330 (764)
..+. +|...|++++|++++ .|++|+.||+|++||++... .....+.+|...|.++ .|++++ ++|+
T Consensus 253 ~~~~~p~~~l~-~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~---~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 253 KMCEKPSLTLS-LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE---VPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp ECCCSCSEEEC-CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS---SCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred eeecCceEEEE-cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC---CceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 2444 799999999999865 89999999999999987642 2344567999999999 567787 8999
Q ss_pred EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (764)
Q Consensus 331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (764)
+++.|+++++||+++.+....+..
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~-------------------------------------------------------- 351 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVS-------------------------------------------------------- 351 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEE--------------------------------------------------------
T ss_pred EeccCCeEEEEECCCCCccccccc--------------------------------------------------------
Confidence 999999999999876543322110
Q ss_pred eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE
Q 004270 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (764)
+ .....+.+++|+|+++.+++++.|+.|++||+.++.....+. +|.+.|++++|+|++++|+
T Consensus 352 ----~------~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--------gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 352 ----R------FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--------SRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp ----E------CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--------ECSSCEEEEECCSSCCBCE
T ss_pred ----c------cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--------cCCCceEEEEeCCCCCeEE
Confidence 0 001346789999999999999999999999999988776664 8999999999999999999
Q ss_pred EEeCCCeEEEEECCCCCeeeeEe------cCcceEEEEEeecCCEEEEEeCCCeEEEEEcc-CCeEEEEeecCCCCeeEE
Q 004270 491 SAGYHGDIKVWDFKGRDLKSRWE------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDF 563 (764)
Q Consensus 491 s~~~dg~v~iwd~~~~~~~~~~~------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~-~~~~~~~~~~h~~~i~~l 563 (764)
+|+.||+|++||...+ .+.... ....+.+++|+|+++.+.. .++ +.+|+.. ++..+..+.+|...|.++
T Consensus 414 Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l~gh~~~V~~V 489 (524)
T 2j04_B 414 AGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKIDAHGINITCT 489 (524)
T ss_dssp EEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC-------------CCCSCCCE
T ss_pred EEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeeecCCCceEEEE
Confidence 9999999999998754 332221 1125678999999985532 222 3344332 467788899999999999
Q ss_pred EEcCCCc---EEEEEeCCCcEEEEEcCc
Q 004270 564 CFSEDGK---WLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 564 ~~s~dg~---~l~s~s~dg~i~iwd~~~ 588 (764)
+|+|++. +||+|+.||.|+||++.-
T Consensus 490 afsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 490 KWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ECCCCCCccHHHHhhccCceEEEEEccc
Confidence 9999964 999999999999999863
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.1e-36 Score=326.60 Aligned_cols=322 Identities=17% Similarity=0.245 Sum_probs=274.3
Q ss_pred eEEEecccccce-EEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcE
Q 004270 85 QVATWSRHSAKV-NLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (764)
Q Consensus 85 ~~~~~~~h~~~v-~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (764)
....+.+|...| .++.+++++|++++.||+|++||+.+++. +..+..|...+..+.++|++ .+++|+.||+|
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~----~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i 185 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF----LLQLSGHDGGVWALKYAHGG---ILVSGSTDRTV 185 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECSTT---EEEEEETTSCE
T ss_pred ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcE----EEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCE
Confidence 345689998874 78889999999999999999999999887 77788888999999999887 79999999999
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEc--CCCCEEEEEEcCCeEEEEEccCCceE----------------------EEE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSS--PALDVVAVGCSDGKIHVHNVRYDEEL----------------------VTF 219 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~s--p~~~~la~g~~dg~i~iwd~~~~~~~----------------------~~~ 219 (764)
++||+++++.+..+.+|...|.+++|+ ++++++++|+.||.|++||+.++... ...
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 999999999999999999999999998 57899999999999999999877643 222
Q ss_pred eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (764)
Q Consensus 220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (764)
...|...|.++ ++++. ++++|+.||.|++||+.+++.+..+. +|...|.+++|+|+++++++++.|+.|++||++.
T Consensus 266 ~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp ECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 33446778777 56777 99999999999999999999999988 8999999999999999999999999999999876
Q ss_pred CCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270 300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379 (764)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (764)
. ..+..+.+|...|.+++|+ ++++++++.||.|++||+.+.......
T Consensus 342 ~----~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--------------------------- 388 (464)
T 3v7d_B 342 G----ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--------------------------- 388 (464)
T ss_dssp T----EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------------------------
T ss_pred C----cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------------------------
Confidence 5 6788888999999999997 579999999999999998754322111
Q ss_pred eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 459 (764)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~ 459 (764)
.+...+..++++++++++++|+ +|.|++||+.+++..
T Consensus 389 ------------------------------------------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 389 ------------------------------------------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp ------------------------------------------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred ------------------------------------------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 1225667789999999999998 899999999999988
Q ss_pred ceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
..+. ..|...|.+++|+ .+.++++++.||.+.+|
T Consensus 426 ~~~~-------~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 426 HANI-------LKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ESCT-------TTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ehhh-------ccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 7643 3789999999997 34555566677765544
No 57
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.7e-37 Score=348.20 Aligned_cols=288 Identities=21% Similarity=0.317 Sum_probs=249.2
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc-----eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEE
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw 295 (764)
..|.+.|++++|+|++..+|++|+.|++|++||+.+. .....+. +|...|.+++|+|++++|++++.|++|++|
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 3458999999999987669999999999999999764 3345565 899999999999999999999999999999
Q ss_pred EecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270 296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375 (764)
Q Consensus 296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (764)
|+... .....+.+|...|.+++|+|++++|++++.|++|++||+......
T Consensus 458 d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-------------------------- 507 (694)
T 3dm0_A 458 DLAAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-------------------------- 507 (694)
T ss_dssp ETTTT----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--------------------------
T ss_pred ECCCC----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce--------------------------
Confidence 98765 567778899999999999999999999999999999996432110
Q ss_pred eeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC--CEEEEEecCCcEEEEEC
Q 004270 376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNL 453 (764)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~~g~i~i~~~ 453 (764)
.......+|...+.+++|+|++ ..+++|+.||.|++||+
T Consensus 508 ---------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~ 548 (694)
T 3dm0_A 508 ---------------------------------------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548 (694)
T ss_dssp ---------------------------------------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred ---------------------------------------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence 0111123566889999999987 68999999999999999
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 533 (764)
.++.....+. +|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..+..+.+++|+|++.+++++
T Consensus 549 ~~~~~~~~~~--------~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 549 SNCKLRSTLA--------GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp TTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE
T ss_pred CCCcEEEEEc--------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 9988877764 89999999999999999999999999999999999999888888999999999999888877
Q ss_pred eCCCeEEEEEccCCeEEEEeecCC-------------------CCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 534 ADDLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 534 ~~d~~i~v~d~~~~~~~~~~~~h~-------------------~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
+ ++.|++||+.+++.+..+..+. ..+++++|||||++|++|+.||+|++||+.
T Consensus 621 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 T-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp E-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred c-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 6 5569999999999988776432 137899999999999999999999999985
No 58
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=309.25 Aligned_cols=296 Identities=18% Similarity=0.189 Sum_probs=254.7
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
..+..+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..+ ...|.+++|+|+++ +|++++.||.|
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~i 83 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKE-LLLFGGKDTMI 83 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTT-EEEEEETTSCE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-CccEEEEEECCCCC-EEEEecCCCeE
Confidence 34788899999999999999 99999999999999999999988888877765 88999999999999 99999999999
Q ss_pred EEEECCCc---eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-C
Q 004270 250 SIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N 325 (764)
Q Consensus 250 ~iwd~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~ 325 (764)
++|++... +....+. +|...|.++.| +++++++++.|+.|++|+ . ......+..|..++.++.|.| +
T Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~----~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E----GSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp EEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T----TEEEEEEECCSSCEEEEEEEETT
T ss_pred EEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C----CcEEEecccCCCceeEEEEccCC
Confidence 99998765 5566666 89999999999 567999999999999998 2 256677788999999999998 8
Q ss_pred CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (764)
++.+++++.|+.+++||....
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~~----------------------------------------------------------- 175 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDKV----------------------------------------------------------- 175 (313)
T ss_dssp TTEEEEEETTSCEEEEETTEE-----------------------------------------------------------
T ss_pred CCEEEEEECCCCEEEEecCce-----------------------------------------------------------
Confidence 999999999999999983110
Q ss_pred EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (764)
...+. ..|...+.+++|+|+
T Consensus 176 -----------------------------------------------------~~~~~-------~~~~~~i~~~~~~~~ 195 (313)
T 3odt_A 176 -----------------------------------------------------IKTFS-------GIHNDVVRHLAVVDD 195 (313)
T ss_dssp -----------------------------------------------------EEEEC-------SSCSSCEEEEEEEET
T ss_pred -----------------------------------------------------EEEEe-------ccCcccEEEEEEcCC
Confidence 00000 147888999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEE
Q 004270 486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC 564 (764)
Q Consensus 486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~ 564 (764)
+. +++++.||.|++||+.+++.+..+..+ ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..|...|++++
T Consensus 196 ~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 196 GH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273 (313)
T ss_dssp TE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEE
T ss_pred Ce-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEE
Confidence 88 999999999999999999999888754 889999999999 689999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599 (764)
Q Consensus 565 ~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 599 (764)
|+|+++ +++++.||.|++||+.+++.+.......
T Consensus 274 ~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~~ 307 (313)
T 3odt_A 274 CMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIKG 307 (313)
T ss_dssp ECTTSC-EEEEETTSCEEEEESCGGGCCC------
T ss_pred EccCCC-EEEEeCCCcEEEEeCCCCceeehhhhhh
Confidence 999998 5678999999999999988776655443
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.3e-37 Score=324.79 Aligned_cols=297 Identities=12% Similarity=0.120 Sum_probs=246.0
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc------eEEEEeccCCCCEEEEEEeeC----C---CCE
Q 004270 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE------ELVTFTHSMRGAVTALAFSSD----G---QPL 239 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~l~fs~d----~---~~~ 239 (764)
....+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+..+ ...|.+++|+|+ + . +
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~-~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELC-L 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEE-E
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC-CCcEEEEEEecccccCCcccc-E
Confidence 3456789999999999999 799999999999999999988 67777654 889999999999 8 8 8
Q ss_pred EEEEeCCCcEEEEECCCcee-----eeeeeccc-----ccCeeEEEEe----cCCCE-EEEEcCCCcEEEEEecC-----
Q 004270 240 LASGASSGVISIWNLEKRRL-----QSVIREAH-----DNAIISLHFF----ANEPV-LMSASADNSIKMWIFDT----- 299 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~~~~~-----~~~~~~~h-----~~~v~~l~~~----~~~~~-l~s~~~d~~i~vw~~~~----- 299 (764)
|++++.||.|++||+.+++. ...+. .| ...|.+++|+ |++++ |++++.|+.|++|++..
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 99999999999999998876 66776 67 5899999999 99999 99999999999999987
Q ss_pred -CCCCc-eeeEec-------cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhh
Q 004270 300 -TDGDP-RLLRFR-------SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 370 (764)
Q Consensus 300 -~~~~~-~~~~~~-------~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (764)
..... .....+ ..|...+.+++|+|++ ++++++.|+.|++||+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~----------------------- 218 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----------------------- 218 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----------------------
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-----------------------
Confidence 32211 011122 3477778888888877 77777778877777764321
Q ss_pred hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270 371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 450 (764)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i 450 (764)
T Consensus 219 -------------------------------------------------------------------------------- 218 (397)
T 1sq9_A 219 -------------------------------------------------------------------------------- 218 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECcCCcccceecCccccccccc---cCcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCCeeeeEec----------
Q 004270 451 FNLQSGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYH---GDIKVWDFKGRDLKSRWEV---------- 514 (764)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~---------- 514 (764)
....+.. ..+| ...|.+++|+|++++|++++.| |.|++||+.+++.+..+..
T Consensus 219 -------~~~~~~~-----~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 1sq9_A 219 -------PLYNFES-----QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286 (397)
T ss_dssp -------EEEEEEC-----CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred -------eeEEEec-----cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence 1111110 0137 8899999999999999999999 9999999999999888874
Q ss_pred ----CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee------cC---------------CCCeeEEEEcCCC
Q 004270 515 ----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE------GH---------------TDRITDFCFSEDG 569 (764)
Q Consensus 515 ----~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~------~h---------------~~~i~~l~~s~dg 569 (764)
...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +| ...|++++|+|+|
T Consensus 287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 5889999999999999999999999999999999999999 88 9999999999998
Q ss_pred ----------cEEEEEeCCCcEEEEEcCccc
Q 004270 570 ----------KWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 570 ----------~~l~s~s~dg~i~iwd~~~~~ 590 (764)
++|++++.||.|++||+.+|+
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998764
No 60
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.7e-37 Score=324.40 Aligned_cols=300 Identities=14% Similarity=0.167 Sum_probs=243.4
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEee-CCCCEE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSS-DGQPLL 240 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~-~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~-d~~~~l 240 (764)
.+|++.+.+....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++....+.. .|...|.+++|+| ++. +|
T Consensus 56 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l 134 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN-QL 134 (383)
T ss_dssp HHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE-EE
T ss_pred ccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC-EE
Confidence 345556778888999999999999999999 9999999999999999999988877763 4689999999999 556 99
Q ss_pred EEEeCCCcEEEEECCCceeeeeee--cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe
Q 004270 241 ASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (764)
++++.|+.|++||+.+. ....+. ..|...|.+++|+|++++|++++.|+.|++||++. ..+..+.+|...|.
T Consensus 135 ~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----HEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----CEEEEEECSSSCEE
T ss_pred EEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----CEEEEeccCCCcEE
Confidence 99999999999999864 444443 13447899999999999999999999999999842 46677789999999
Q ss_pred eEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270 319 CIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (764)
Q Consensus 319 ~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (764)
+++|+|+++ ++++++.|+.|++||+.+.......
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------------------------------------- 243 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY--------------------------------------------- 243 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE---------------------------------------------
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce---------------------------------------------
Confidence 999999998 9999999999999998653211000
Q ss_pred CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (764)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (764)
... .+|...|
T Consensus 244 -------------------------------------------------------------~~~---------~~~~~~v 253 (383)
T 3ei3_B 244 -------------------------------------------------------------IAE---------MPHEKPV 253 (383)
T ss_dssp -------------------------------------------------------------EEE---------EECSSCE
T ss_pred -------------------------------------------------------------EEE---------ecCCCce
Confidence 000 1466677
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecC------------------cceEEEEEeecCCEEEEEeCCCe
Q 004270 478 VGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------------------CSLVKIVYHRVNGLLATVADDLV 538 (764)
Q Consensus 478 ~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------------------~~i~~~~~s~~~~~la~~~~d~~ 538 (764)
.+++|+| ++++|++++.|+.|++||+.+++....+..+ ..+..++++|++++ +++.|+.
T Consensus 254 ~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~ 331 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT 331 (383)
T ss_dssp EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC
T ss_pred EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe
Confidence 7777877 7777777777788888887776665554421 34455667777766 7778999
Q ss_pred EEEEEccCCeEEEEeec--CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 539 IRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 539 i~v~d~~~~~~~~~~~~--h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
|++||+.+++.+..+.+ |...+..++|+|+|++|++++ |+.|++||+.+
T Consensus 332 i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 332 IDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 99999999999999987 457788889999999999997 99999999874
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-36 Score=311.95 Aligned_cols=301 Identities=18% Similarity=0.286 Sum_probs=253.1
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-----KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK 204 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~ 204 (764)
..+++.|.+.+..++|+|+.. ++|++|+.||+|++||+.+. .+...+.+|...|.+++|+|++++|++|+.|+.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~-~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFP-DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCT-TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEECCccCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 567888999999999999842 68999999999999998764 367788999999999999999999999999999
Q ss_pred EEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCC--CE
Q 004270 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE--PV 282 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~ 282 (764)
|++|+............. ...+..+.+++++. +|++|+.|+.+++||+...........+|...+..++|++++ .+
T Consensus 110 i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGH-TKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEEETTTTEEEEEEECC-SSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred ceEEeecccceeeeecCC-CCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 999999988887777665 77899999999998 899999999999999987766555555899999999998865 47
Q ss_pred EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (764)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (764)
+++++.|+.|++|++... .....+.+|..+|++++|+|++++|++++.|+.|++||+.+......+.
T Consensus 188 ~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------- 254 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--------- 254 (340)
T ss_dssp EEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------
T ss_pred EEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec---------
Confidence 889999999999998765 6777888999999999999999999999999999999987654332221
Q ss_pred hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442 (764)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 442 (764)
+...+.+++++|++.++ ++
T Consensus 255 ------------------------------------------------------------~~~~v~~~~~~~~~~~~-~~ 273 (340)
T 4aow_A 255 ------------------------------------------------------------GGDIINALCFSPNRYWL-CA 273 (340)
T ss_dssp ------------------------------------------------------------CSSCEEEEEECSSSSEE-EE
T ss_pred ------------------------------------------------------------CCceEEeeecCCCCcee-ec
Confidence 12678999999987655 55
Q ss_pred ecCCcEEEEECcCCcccceecCcc-ccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270 443 TAGGWIERFNLQSGISRGSYLDMS-ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 443 ~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 507 (764)
+.|+.|++||++++.....+.... .....+|...|++++|+|++++|++|+.||.|++||+.+|+
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 679999999999887766554221 11234789999999999999999999999999999999875
No 62
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.6e-35 Score=350.30 Aligned_cols=499 Identities=13% Similarity=0.074 Sum_probs=369.7
Q ss_pred CeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEEC-------C--eEEEEec-CceEEEecccccc
Q 004270 26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYG-------N--HIAVVKR-AHQVATWSRHSAK 95 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g-------~--~i~vw~~-~~~~~~~~~h~~~ 95 (764)
++.++.++. +.+.+||+.+++..... .|...+.+++||||+.++|+. + .|++|+. +.+...+.+|...
T Consensus 24 ~~~iaf~~~-~~l~~~~~~gg~~~~lt-~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~ 101 (1045)
T 1k32_A 24 GDRIIFVCC-DDLWEHDLKSGSTRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK 101 (1045)
T ss_dssp TTEEEEEET-TEEEEEETTTCCEEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred CCEEEEEEC-CcEEEEECCCCcEEEee-eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCc
Confidence 356666654 79999999988765554 688999999999999887753 2 3999996 4456678999988
Q ss_pred e-------EEEEE--eCCEEEEEecC------CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC-
Q 004270 96 V-------NLLLL--FGEHILSIDID------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ- 159 (764)
Q Consensus 96 v-------~~l~~--~g~~l~s~~~d------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~- 159 (764)
+ ..++| ||+.+++++.+ ..|.+|++.+++.. .+..+ ......|+| + .+++++.
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-----~l~~~--~~~~~~~sp-G---~l~~~~~~ 170 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV-----PLNLG--PATHILFAD-G---RRVIGRNT 170 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-----ECCSC--SCSEEEEET-T---EEEEEESC
T ss_pred ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE-----EecCC--CcceeeeCC-C---EEEEeccC
Confidence 8 77776 78877777654 34777888776541 12112 223566888 5 6777653
Q ss_pred -----------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCE
Q 004270 160 -----------EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAV 227 (764)
Q Consensus 160 -----------dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v 227 (764)
+....+|....+.....+.+|...+.++.|+++ .++++++.+|.+.||.+.. +.....+..+ . .+
T Consensus 171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~-~-~~ 247 (1045)
T 1k32_A 171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF-T-DY 247 (1045)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCC-C-SS
T ss_pred CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCC-C-Cc
Confidence 234566654333455666899999999999998 6777778889999998764 4445555443 2 46
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec----------ccccCeeEEEEe-cCCCEEEEEcCCCcEEEEE
Q 004270 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----------AHDNAIISLHFF-ANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----------~h~~~v~~l~~~-~~~~~l~s~~~d~~i~vw~ 296 (764)
...+|+|||+ .|+.+. ++.|.+||+...+.. .+.. .|...+.+++|+ |+|+.|++++ ++.+.+|+
T Consensus 248 ~~~~~SpDG~-~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~ 323 (1045)
T 1k32_A 248 YPRHLNTDGR-RILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQD 323 (1045)
T ss_dssp CEEEEEESSS-CEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEEC
T ss_pred ceeeEcCCCC-EEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEc
Confidence 6779999999 666664 899999999554433 4431 144579999999 9999998887 78899997
Q ss_pred ecCCCCCceeeEeccCCCC-CCeeEEEecCCCEEEEEeCCCcEE-EEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 297 FDTTDGDPRLLRFRSGHSA-PPLCIRFYANGRHILSAGQDRAFR-LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~-~v~~i~~~~~~~~l~s~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
.... . ...+..|.. .+..++|+ ||+.+++++.++.+. +|++..+...
T Consensus 324 ~~~~----~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~------------------------- 372 (1045)
T 1k32_A 324 VSGT----Y-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE------------------------- 372 (1045)
T ss_dssp TTSS----B-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-------------------------
T ss_pred CCCC----c-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-------------------------
Confidence 6543 2 233456777 88999999 999999998877777 7776433210
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~ 454 (764)
.+ ..+...+..++|+|+|+++++++.++.|++||+.
T Consensus 373 -----------------------------------------~l---~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 373 -----------------------------------------KF---EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp -----------------------------------------EC---CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -----------------------------------------Ee---cCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 00 0344778999999999999999999999999999
Q ss_pred CCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC----------eEEEEECCCCCeeeeEecCcceEEEEEe
Q 004270 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG----------DIKVWDFKGRDLKSRWEVGCSLVKIVYH 524 (764)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----------~v~iwd~~~~~~~~~~~~~~~i~~~~~s 524 (764)
++....... .|...+.+++|+|||++|++++.++ .|++||+.+++......+...+..++|+
T Consensus 409 tg~~~~~~~--------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~s 480 (1045)
T 1k32_A 409 TGKPTVIER--------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFD 480 (1045)
T ss_dssp TCCEEEEEE--------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEEC
T ss_pred CCceEEecc--------CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEc
Confidence 988766553 7888899999999999999887654 8999999988744444445778889999
Q ss_pred ecCCEEEEEeCCCeEEEEEccCCe-------------------------------------------EEEEeecCCCCee
Q 004270 525 RVNGLLATVADDLVIRLFDVVALR-------------------------------------------MVRKFEGHTDRIT 561 (764)
Q Consensus 525 ~~~~~la~~~~d~~i~v~d~~~~~-------------------------------------------~~~~~~~h~~~i~ 561 (764)
|||++|++++.++...+|+..... .+..+..|.+.+.
T Consensus 481 pdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~ 560 (1045)
T 1k32_A 481 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 560 (1045)
T ss_dssp TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred CCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChh
Confidence 999999999987776666543221 1233445677889
Q ss_pred EEEEcCCCcEEEE-------------EeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 562 DFCFSEDGKWLLS-------------SGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 562 ~l~~s~dg~~l~s-------------~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
.++|+|||+++++ .+.+..|.+||+.+++..... ..+.+++|||||++|++++.+ .|++|++
T Consensus 561 ~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~l~~~~~~--~i~~~d~ 635 (1045)
T 1k32_A 561 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDD--GKIYTFP 635 (1045)
T ss_dssp EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETT--SCEEEEE
T ss_pred heEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCEEEEEcCC--cEEEEeC
Confidence 9999999997875 123457889999988754333 568899999999999999866 3999999
Q ss_pred cccc
Q 004270 629 RCMF 632 (764)
Q Consensus 629 ~~~~ 632 (764)
...-
T Consensus 636 ~~~~ 639 (1045)
T 1k32_A 636 LEKP 639 (1045)
T ss_dssp SSCT
T ss_pred ccCc
Confidence 6543
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.9e-37 Score=319.70 Aligned_cols=312 Identities=14% Similarity=0.183 Sum_probs=255.7
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (764)
Q Consensus 177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~ 254 (764)
+..|..+|.+++|+|++++|++|+.||.|++||+.+++ .+..+..+ ...|.+++|+|+++ +|++++.||.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSN-RIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTT-EEEEEETTSCEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCC-EEEEEcCCCeEEEEEC
Confidence 45689999999999999999999999999999999987 77777654 88999999999998 9999999999999999
Q ss_pred CCceeeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe
Q 004270 255 EKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (764)
Q Consensus 255 ~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (764)
++++...... ..|...|.+++|+|++++|++++.|+.|++|+++.............+|...|.+++|+|++++|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 8887554442 368999999999999999999999999999999876533233444578899999999999999999999
Q ss_pred CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (764)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 413 (764)
.|+.+++||+............
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~---------------------------------------------------------- 183 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPT---------------------------------------------------------- 183 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCB----------------------------------------------------------
T ss_pred CCCCEEEEEccccccccccccc----------------------------------------------------------
Confidence 9999999998643221110000
Q ss_pred ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe
Q 004270 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG 493 (764)
Q Consensus 414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 493 (764)
+-+ .....+.....+ ..|...|.+++|+|++++|++++
T Consensus 184 --------------------~~~--------------~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 184 --------------------PWG--------------SKMPFGELMFES--------SSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp --------------------TTB--------------SCCCTTCEEEEC--------CCCSSCEEEEEECSSSSEEEEEE
T ss_pred --------------------ccc--------------cccchhhheEec--------CCCCCeEEEEEECCCCCEEEEEe
Confidence 000 001112222222 27889999999999999999999
Q ss_pred CCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccC--CeE---------------------
Q 004270 494 YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVA--LRM--------------------- 549 (764)
Q Consensus 494 ~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~--~~~--------------------- 549 (764)
.||.|++||+.+++.+..+..+ .++.+++|+|++.+++++ .|+.|++|++.+ ++.
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 300 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence 9999999999999999888876 689999999999998888 999999999988 421
Q ss_pred -----------E------EEe-ecCCCCeeEEEEc-CCC---cEEEEEeCCCcEEEEEcCccce
Q 004270 550 -----------V------RKF-EGHTDRITDFCFS-EDG---KWLLSSGMDGSLRIWDVILARQ 591 (764)
Q Consensus 550 -----------~------~~~-~~h~~~i~~l~~s-~dg---~~l~s~s~dg~i~iwd~~~~~~ 591 (764)
. ..+ .+|...|++++|+ ++| ++|+|++.||.|++||+.+++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0 223 4899999999966 677 9999999999999999987643
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-37 Score=323.27 Aligned_cols=314 Identities=18% Similarity=0.229 Sum_probs=248.4
Q ss_pred EcCCCCCeEEEEEcCC----CCEEEEEEcCCeEEEEEccCCceEEEEecc----CCCCEEEEEEeeC----CCCEEEEEe
Q 004270 177 FKGWGSSISSCVSSPA----LDVVAVGCSDGKIHVHNVRYDEELVTFTHS----MRGAVTALAFSSD----GQPLLASGA 244 (764)
Q Consensus 177 ~~~h~~~i~~~~~sp~----~~~la~g~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~l~fs~d----~~~~l~sg~ 244 (764)
..+|..+|.+++|+|+ ...+++++.++.|++||+.+++.+..+..+ +...|++++|+|+ +. +|++|+
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~ 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVAG 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEec
Confidence 4589999999999984 456777777789999999988877766632 3578999999999 55 899999
Q ss_pred CCCcEEEEECCCceeeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEec---cCCCCCCeeE
Q 004270 245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFR---SGHSAPPLCI 320 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~---~~h~~~v~~i 320 (764)
.||.|++||+.+++.+..+. +|...|.+++|+| ++.+|++++.|+.|++||++.. ..+..+ .+|...|.++
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD----TLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT----EEEEEECSTTSCSSCEEEE
T ss_pred CCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC----eEEEEecccccccCceeEE
Confidence 99999999999999999888 8999999999999 8999999999999999998765 455554 6899999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
+|+|++++|++++.||.|++||+.+......+....
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------------------------- 203 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-------------------------------------------- 203 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH--------------------------------------------
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccceeE--------------------------------------------
Confidence 999999999999999999999998765443322100
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 480 (764)
.++|++..+......... ..... ...|...|.++
T Consensus 204 ------------------------------~~~~~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~v~~~ 237 (366)
T 3k26_A 204 ------------------------------DYNPNKTNRPFISQKIHF--------PDFST--------RDIHRNYVDCV 237 (366)
T ss_dssp ------------------------------TCCGGGCSSCCCCEEECC--------CSEEE--------CSSCSSCCCEE
T ss_pred ------------------------------EecCCCCcccccceeecc--------Ccccc--------ccCCcceEEEE
Confidence 000111100000000000 00000 13688889999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCe--------------eeeEecC-cceEEEEEeec--CCEEEEEeCCCeEEEEE
Q 004270 481 ACDSTNTLMISAGYHGDIKVWDFKGRDL--------------KSRWEVG-CSLVKIVYHRV--NGLLATVADDLVIRLFD 543 (764)
Q Consensus 481 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------------~~~~~~~-~~i~~~~~s~~--~~~la~~~~d~~i~v~d 543 (764)
+|+ ++++++++.||.|++||+.+++. +..+..+ ..+.+++|+|+ +++|++++.||.|++||
T Consensus 238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 238 RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 998 67899999999999999877643 4444444 78999999999 99999999999999999
Q ss_pred ccCCe----EEEEeecC--CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 544 VVALR----MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 544 ~~~~~----~~~~~~~h--~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99875 45578887 79999999999999999999999999999863
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-38 Score=341.91 Aligned_cols=354 Identities=10% Similarity=0.029 Sum_probs=250.1
Q ss_pred CCcceEEEEEeCCe---------EEEEECCeEEEEecCceEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcc
Q 004270 55 LPKKIRALASYRDY---------TFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEE 125 (764)
Q Consensus 55 ~~~~I~~~~~~~~~---------~~~a~g~~i~vw~~~~~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~ 125 (764)
+.+.|.+|+|+|+. .++|++..-. +. ..-.++++.+++++.|++|+|||+.+++.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~----~~------------~~~~~~~~~laS~s~D~tI~iWd~~~~~~ 195 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQY----MD------------EPLNEHLEMFDKEKHSSCIQIFKMNTSTL 195 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------CEEEEEEEEETTTC
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecc----cC------------CccchhhhhhccCCCCceEEEEEccCCCC
Confidence 57899999999986 7777754211 00 01147888999999999999999988765
Q ss_pred cccceeeEecCCccccEEEEeCCC----CCCEEEEEeCCCcEEEEeCCCCeE-----------EEEEcCCCCCeEEEEEc
Q 004270 126 NLAPVGHVKLDDKFTPTCIMHPDT----YLNKVIVGSQEGSLQLWNISTKKK-----------LYEFKGWGSSISSCVSS 190 (764)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p~~----~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~h~~~i~~~~~s 190 (764)
.......+..+...+..++|+|++ ..+.|++++.||+|++||+.+++. ...+.+|...|++++|+
T Consensus 196 ~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s 275 (524)
T 2j04_B 196 HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL 275 (524)
T ss_dssp CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES
T ss_pred CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec
Confidence 322223455566778889999972 126899999999999999987642 34788999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCce-EEEEeccCCCCEEEE--EEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc
Q 004270 191 PALDVVAVGCSDGKIHVHNVRYDEE-LVTFTHSMRGAVTAL--AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH 267 (764)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~l--~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h 267 (764)
++ ..|++|+.||+|++||++++.. ...+.. |...|.++ +|+|++..+|++|+.|++|+|||+++++....+. +|
T Consensus 276 ~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~ 352 (524)
T 2j04_B 276 SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SR 352 (524)
T ss_dssp SS-SEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EE
T ss_pred CC-CeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cc
Confidence 86 4899999999999999998754 344554 48899999 5788873399999999999999999988877776 66
Q ss_pred cc--CeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 268 DN--AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 268 ~~--~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
.. .|.+++|+|+++.+++++.|++|++||+... ..+..+.+|...|++++|+|+++.|++|+.|++|++|++..
T Consensus 353 ~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred cccCcccceEeCCCcCeEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 53 5889999999999999999999999998765 34455678999999999999999999999999999999753
Q ss_pred ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (764)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (764)
. ........ . ......
T Consensus 429 ~-~~~~~~~~----------------------------------------------------------~-----~~~~~~ 444 (524)
T 2j04_B 429 R-LLHGIKNS----------------------------------------------------------S-----ATQKSL 444 (524)
T ss_dssp S-TTTCC---------------------------------------------------------------------CCCC
T ss_pred h-hccccccC----------------------------------------------------------c-----cceeee
Confidence 2 11000000 0 000112
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECc-CCcccceecCccccccccccCcEEEEEECCCC---CEEEEEeCCCeEEEE
Q 004270 426 AVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTN---TLMISAGYHGDIKVW 501 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~dg~v~iw 501 (764)
.+.+++++|+|+.+.. ..+ +.+|... ++.....+ .+|...|.+++|+|++ ..+++|+.||.|+||
T Consensus 445 ~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l--------~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw 513 (524)
T 2j04_B 445 RLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKI--------DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE 513 (524)
T ss_dssp EEEECBCCSSSCEEEE-CCC--CCCCC---------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred EEEEeccCCCCCeEEc-cCC--ceecccccCCcceeee--------cCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence 4667889999885422 222 2233222 34444444 4899999999999996 499999999999999
Q ss_pred ECCCC
Q 004270 502 DFKGR 506 (764)
Q Consensus 502 d~~~~ 506 (764)
++...
T Consensus 514 ~l~~~ 518 (524)
T 2j04_B 514 YLSLE 518 (524)
T ss_dssp ECSCC
T ss_pred Ecccc
Confidence 98743
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.3e-37 Score=321.64 Aligned_cols=297 Identities=14% Similarity=0.176 Sum_probs=245.8
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHI 329 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l 329 (764)
|++...+....+. +|...|.+++|+|++ ++|++++.|+.|++|++..... .......+|...|.+++|+| ++++|
T Consensus 58 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 58 RSLKSYKLHRTAS-PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--TSFIQGMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp HHHTTCEEEEEEC-CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC--EEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred ccccccceEEecc-CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc--ceeeecCCcCCceeEEEeCCCCCCEE
Confidence 3444556666676 899999999999999 8999999999999999876532 33333357999999999999 78999
Q ss_pred EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
++++.|+.|++||+.... ..
T Consensus 135 ~s~~~d~~i~iwd~~~~~-~~----------------------------------------------------------- 154 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGSV-IQ----------------------------------------------------------- 154 (383)
T ss_dssp EEEETTTEEEEEETTSCE-EE-----------------------------------------------------------
T ss_pred EEEeCCCEEEEEECCCCc-eE-----------------------------------------------------------
Confidence 999999999999986321 11
Q ss_pred eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-E
Q 004270 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-L 488 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~ 488 (764)
.+.....+...+.+++|+|+++++++|+.||.|++||+ ++.....+. +|...|.+++|+|+++ +
T Consensus 155 ------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~--------~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 155 ------VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK--------LHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp ------EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE--------CSSSCEEEEEECSSCTTE
T ss_pred ------EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec--------cCCCcEEEEEECCCCCCE
Confidence 11112234578999999999999999999999999999 455555554 8999999999999998 9
Q ss_pred EEEEeCCCeEEEEECCC----CCeeeeEecCcceEEEEEee-cCCEEEEEeCCCeEEEEEccCCeEEEEeecCC------
Q 004270 489 MISAGYHGDIKVWDFKG----RDLKSRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHT------ 557 (764)
Q Consensus 489 l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~------ 557 (764)
+++++.|+.|++||+.+ +..+..+.+...+.+++|+| ++.+|++++.|+.|++||+.+++.+..+.+|.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH 299 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence 99999999999999997 67777787789999999999 99999999999999999999988877776553
Q ss_pred -----------CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC--C-ceEEEEEcCCCCeEEEEEeCCCeE
Q 004270 558 -----------DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--V-SITALSLSPNMDVLATAHVDQNGV 623 (764)
Q Consensus 558 -----------~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~-~v~~l~~sp~g~~lat~~~d~~~i 623 (764)
+.+..++|+|||++ +++.|+.|++||+.+++++..+..+ . .+..++|+|+|++|++++ |+ .|
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~-~i 375 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF-NI 375 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT-EE
T ss_pred ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC-cE
Confidence 23344666777766 7779999999999999999999863 3 377779999999999996 77 69
Q ss_pred EEEeccc
Q 004270 624 YLWVNRC 630 (764)
Q Consensus 624 ~lW~~~~ 630 (764)
++|+++.
T Consensus 376 ~iw~~~~ 382 (383)
T 3ei3_B 376 LIWNRED 382 (383)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 9999864
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-38 Score=336.55 Aligned_cols=350 Identities=12% Similarity=0.153 Sum_probs=265.4
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccC---Cc---e
Q 004270 144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF-KGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY---DE---E 215 (764)
Q Consensus 144 ~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~---~~---~ 215 (764)
.|+|++ +.+++++ .|+ .+++++..+ .+|.+.|++++|+| ++++|++|+.||.|++||+.+ +. .
T Consensus 34 ~f~~~~--~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQ--EIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCC--CCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCcc--ccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 456777 4555543 488 578899999 89999999999999 999999999999999999987 43 2
Q ss_pred EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC---Cceeeeeee--------c-c--cccCeeEEE--EecC
Q 004270 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE---KRRLQSVIR--------E-A--HDNAIISLH--FFAN 279 (764)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~---~~~~~~~~~--------~-~--h~~~v~~l~--~~~~ 279 (764)
...+ .|.+.|.+++|+|++. +|++|+.||.|++||++ +++...... . . +...+.++. ++++
T Consensus 105 ~~~~--~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 105 SLTY--DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp SEEE--ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred eeec--cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 3333 3588999999999998 99999999999999995 444433332 0 1 455666666 4578
Q ss_pred CCEEEEEcCCCcEEEEEecCCCCCceeeEeccC--CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG--HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (764)
Q Consensus 280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (764)
+.+|++++.|+.|++||+... ..+..+.+ |...|++++|+|++++|++++.||.|++||++.+.....+..
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--- 254 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTL----ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--- 254 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTC----CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC---
T ss_pred CCEEEEEeCCCeEEEEeCCCC----eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec---
Confidence 999999999999999998765 45666666 899999999999999999999999999999876544332211
Q ss_pred hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc----
Q 004270 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS---- 433 (764)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s---- 433 (764)
.+...|.+++++
T Consensus 255 ----------------------------------------------------------------~~~~~v~~~~~~~~~s 270 (437)
T 3gre_A 255 ----------------------------------------------------------------GDHAPITHVEVCQFYG 270 (437)
T ss_dssp ----------------------------------------------------------------TTCEEEEEEEECTTTC
T ss_pred ----------------------------------------------------------------CCCCceEEEEeccccC
Confidence 233578888555
Q ss_pred cCCCEEEEEecCCcEEEEECcCCcccceecCcccc----------------cccc--ccCcEEEEEECCCCCEEEEEeCC
Q 004270 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER----------------SNYA--HNGEVVGVACDSTNTLMISAGYH 495 (764)
Q Consensus 434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~----------------~~~~--h~~~v~~l~~~~~~~~l~s~~~d 495 (764)
+++.++++|+.||.|++||+.++.....+...... ...+ |...|++++|+ ++++|++++.|
T Consensus 271 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d 349 (437)
T 3gre_A 271 KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT 349 (437)
T ss_dssp TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence 56889999999999999999998876665422110 1122 88889999999 77899999999
Q ss_pred CeEEEEECCCCCeeeeEecC----cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC--C
Q 004270 496 GDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED--G 569 (764)
Q Consensus 496 g~v~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d--g 569 (764)
|.|++||+.+++....+..+ ..+....+++...+++.. ++.........+..|...|++++|+++ +
T Consensus 350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~ 421 (437)
T 3gre_A 350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDET 421 (437)
T ss_dssp TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSS
T ss_pred CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCc
Confidence 99999999999988888754 345555566555544443 233334445666779999999999998 8
Q ss_pred cEEEEEeCCCcEEEEE
Q 004270 570 KWLLSSGMDGSLRIWD 585 (764)
Q Consensus 570 ~~l~s~s~dg~i~iwd 585 (764)
.+|++|+.||.|+||+
T Consensus 422 ~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 422 PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEETTSCEEEEC
T ss_pred eEEEEEcCCceEEEeC
Confidence 8999999999999995
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.9e-36 Score=320.19 Aligned_cols=291 Identities=19% Similarity=0.306 Sum_probs=248.8
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeee
Q 004270 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261 (764)
Q Consensus 183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~ 261 (764)
.++.++||++ ++||+|. |++|+|||+.+++....+.. .|...|++++|+|+|+ +|++|+.||.|++||+++++.+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEE
Confidence 4678999986 5888876 89999999999998887764 4467899999999999 99999999999999999999999
Q ss_pred eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (764)
Q Consensus 262 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~ 341 (764)
.+. +|...+.++.+. +..|++++.|+.+++|+..... ..+..+.+|...+..+.++|+++++++++.|+.+++|
T Consensus 184 ~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~---~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 184 NMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp EEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc---eeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 988 899999988874 6799999999999999876653 4566778999999999999999999999999999999
Q ss_pred EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (764)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (764)
+...+.....
T Consensus 258 ~~~~~~~~~~---------------------------------------------------------------------- 267 (420)
T 4gga_A 258 PSAPGEGGWV---------------------------------------------------------------------- 267 (420)
T ss_dssp ESSCCSSCSC----------------------------------------------------------------------
T ss_pred eeccccccce----------------------------------------------------------------------
Confidence 9765422110
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEE--eCCCeE
Q 004270 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISA--GYHGDI 498 (764)
Q Consensus 422 ~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~--~~dg~v 498 (764)
..... ..|...|.+++|+|.+. .++++ +.|++|
T Consensus 268 ------------------------------------~~~~~--------~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 268 ------------------------------------PLQTF--------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp ------------------------------------CSEEE--------CCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred ------------------------------------eeeee--------cccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 00011 27888999999999664 45543 479999
Q ss_pred EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe--CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s 576 (764)
++||+.++++...+..+..+.++.|+++++.+++++ .|+.|+|||+.+++++.++.+|.+.|++++|+|||++|+||+
T Consensus 304 ~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999999999999999999999999998876 789999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCccceEEEEe
Q 004270 577 MDGSLRIWDVILARQIDAIH 596 (764)
Q Consensus 577 ~dg~i~iwd~~~~~~~~~~~ 596 (764)
.|++|+|||+.+..+.....
T Consensus 384 ~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 384 ADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp TTTEEEEECCSCSSCC----
T ss_pred cCCeEEEEECCCCCccchhh
Confidence 99999999998776655443
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=318.29 Aligned_cols=303 Identities=14% Similarity=0.189 Sum_probs=249.2
Q ss_pred CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC---CCcEEEEECCCceeeeeeecccccCeeEEEEecC---CCEEEEE
Q 004270 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN---EPVLMSA 286 (764)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~ 286 (764)
.+.+..+...|...|.+++|+|++..++++|+. ||.|++||+.+++.......+|...|.+++|+|+ +.+|+++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 344455555568999999999999757777776 9999999999988766655579999999999998 6999999
Q ss_pred cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE------ecCCCEEEEEeCCCcEEEEEeeccc-ccccccchhhhH
Q 004270 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF------YANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAK 359 (764)
Q Consensus 287 ~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~------~~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~~ 359 (764)
+.|+.|++|++.... ..+..+.+|...|.++.| +|++++|++++.|+.|++||+.+.. ....+..
T Consensus 87 ~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----- 158 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP----- 158 (357)
T ss_dssp ETTSCEEEECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-----
T ss_pred cCCCeEEEEeCCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-----
Confidence 999999999887663 255667799999999965 6789999999999999999987654 2211110
Q ss_pred HHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE----EccC
Q 004270 360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT----ISAC 435 (764)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~ 435 (764)
........+.+++ ++|+
T Consensus 159 -----------------------------------------------------------~~~~~~~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 159 -----------------------------------------------------------VQGENKRDCWTVAFGNAYNQE 179 (357)
T ss_dssp -----------------------------------------------------------CTTSCCCCEEEEEEECCCC-C
T ss_pred -----------------------------------------------------------cCCCCCCceEEEEEEeccCCC
Confidence 0001124777787 7899
Q ss_pred CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270 436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 512 (764)
++++++|+.+|.|++||+.++...... .|...|.+++|+| ++.++++++.||.|++||+.+++....+
T Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 180 ERVVCAGYDNGDIKLFDLRNMALRWET---------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred CCEEEEEccCCeEEEEECccCceeeec---------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 999999999999999999998875442 7889999999999 9999999999999999999887766555
Q ss_pred e------cCcceEEEEEeecCC-EEEEEeCCCeEEEEEccCC-------------------eEEEEeecCCCCeeEEEEc
Q 004270 513 E------VGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL-------------------RMVRKFEGHTDRITDFCFS 566 (764)
Q Consensus 513 ~------~~~~i~~~~~s~~~~-~la~~~~d~~i~v~d~~~~-------------------~~~~~~~~h~~~i~~l~~s 566 (764)
. +...|.+++|+|+++ ++++++.||.|++||+.++ +.+..+.+|...|++++|+
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 3 458999999999998 8999999999999999854 5678899999999999999
Q ss_pred CCCcEEE-EEeCCCcEEEEEcCccce
Q 004270 567 EDGKWLL-SSGMDGSLRIWDVILARQ 591 (764)
Q Consensus 567 ~dg~~l~-s~s~dg~i~iwd~~~~~~ 591 (764)
|+|++|+ +++.|+.|++||+.+.+.
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCCeEEEEecCCCcEEEEECCCccc
Confidence 9999998 899999999999987654
No 70
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-36 Score=319.03 Aligned_cols=297 Identities=17% Similarity=0.270 Sum_probs=247.6
Q ss_pred eEEEEEcCCCCC--eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 172 KKLYEFKGWGSS--ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 172 ~~~~~~~~h~~~--i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
..+....+|... +.++.|++ ..+++++.||.|++||+.+++....+...|...|.+++|+|+++ +|++|+.||.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i 158 (401)
T 4aez_A 82 ERVLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLV 158 (401)
T ss_dssp SEEEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCE
T ss_pred ceeeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeE
Confidence 344445566555 44566665 45788889999999999999998888877789999999999998 99999999999
Q ss_pred EEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEE
Q 004270 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (764)
Q Consensus 250 ~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (764)
++||+.+++.+..+. +|...|.+++| ++..+++++.|+.|++||++... .....+.+|...|.+++|+|++++|
T Consensus 159 ~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l 232 (401)
T 4aez_A 159 DIYDVESQTKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN---HQIGTLQGHSSEVCGLAWRSDGLQL 232 (401)
T ss_dssp EEEETTTCCEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEECcCCeEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc---ceeeEEcCCCCCeeEEEEcCCCCEE
Confidence 999999999999988 89999999999 45699999999999999987543 4566677899999999999999999
Q ss_pred EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccc
Q 004270 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (764)
Q Consensus 330 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (764)
++++.|+.|++||+.+...
T Consensus 233 ~s~~~d~~v~iwd~~~~~~------------------------------------------------------------- 251 (401)
T 4aez_A 233 ASGGNDNVVQIWDARSSIP------------------------------------------------------------- 251 (401)
T ss_dssp EEEETTSCEEEEETTCSSE-------------------------------------------------------------
T ss_pred EEEeCCCeEEEccCCCCCc-------------------------------------------------------------
Confidence 9999999999998753211
Q ss_pred eeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-E
Q 004270 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-L 488 (764)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~ 488 (764)
...+ ..|...|.+++|+|++. +
T Consensus 252 -------------------------------------------------~~~~--------~~~~~~v~~~~~~p~~~~l 274 (401)
T 4aez_A 252 -------------------------------------------------KFTK--------TNHNAAVKAVAWCPWQSNL 274 (401)
T ss_dssp -------------------------------------------------EEEE--------CCCSSCCCEEEECTTSTTE
T ss_pred -------------------------------------------------cEEe--------cCCcceEEEEEECCCCCCE
Confidence 1111 26888999999999764 5
Q ss_pred EEEEe--CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe--CCCeEEEEEccCCeEEE--EeecCCCCeeE
Q 004270 489 MISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVR--KFEGHTDRITD 562 (764)
Q Consensus 489 l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~--~~~~h~~~i~~ 562 (764)
+++++ .|+.|++||+.+++.+..+.++..+.+++|+|+++++++++ .||.|++||+.+++... .+.+|...|.+
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~ 354 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY 354 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE
Confidence 55554 69999999999999999999999999999999999999954 89999999999976544 47799999999
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE
Q 004270 563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 595 (764)
Q Consensus 563 l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~ 595 (764)
++|+|+|++|++++.||.|++||+.+++.+...
T Consensus 355 ~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 355 SALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999999999999999999999999999877654
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.8e-36 Score=317.51 Aligned_cols=298 Identities=12% Similarity=0.195 Sum_probs=253.2
Q ss_pred ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce------eeeeeecccccCeeEEEEecC----C---CEEEEEc
Q 004270 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR------LQSVIREAHDNAIISLHFFAN----E---PVLMSAS 287 (764)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~------~~~~~~~~h~~~v~~l~~~~~----~---~~l~s~~ 287 (764)
..|.+.|++++|+| + +|++|+.||.|++||+.+++ ....+. +|...|.+++|+|+ + .+|++++
T Consensus 13 ~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 13 KAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc
Confidence 45689999999998 4 89999999999999999887 677777 89999999999999 9 9999999
Q ss_pred CCCcEEEEEecCCCCCce-eeEeccCC-----CCCCeeEEEe----cCCCE-EEEEeCCCcEEEEEeec------ccccc
Q 004270 288 ADNSIKMWIFDTTDGDPR-LLRFRSGH-----SAPPLCIRFY----ANGRH-ILSAGQDRAFRLFSVIQ------DQQSR 350 (764)
Q Consensus 288 ~d~~i~vw~~~~~~~~~~-~~~~~~~h-----~~~v~~i~~~----~~~~~-l~s~~~dg~i~i~d~~~------~~~~~ 350 (764)
.|+.|++|++........ ....+..| ...|.+++|+ |++++ |++++.||.|++||+.. .....
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence 999999999987643211 15666778 5999999999 99999 99999999999999876 21110
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
T Consensus 169 -------------------------------------------------------------------------------- 168 (397)
T 1sq9_A 169 -------------------------------------------------------------------------------- 168 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (764)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 510 (764)
+.+.+.+. +. . .. ...|...|.+++|+|++ ++++++.||.|++||+.+++.+.
T Consensus 169 -~~~~~~~~--~~---------------~-~~-------~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 221 (397)
T 1sq9_A 169 -WSPTLELQ--GT---------------V-ES-------PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 221 (397)
T ss_dssp -CCCEEEEE--EE---------------E-CC-------SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred -ccCcceee--ee---------------e-cc-------ccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeE
Confidence 00000000 00 0 00 02688899999999999 99999999999999999999999
Q ss_pred eEec-------CcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeec-------------CCCCeeEEEEcC
Q 004270 511 RWEV-------GCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEG-------------HTDRITDFCFSE 567 (764)
Q Consensus 511 ~~~~-------~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~-------------h~~~i~~l~~s~ 567 (764)
.+.. ...+.+++|+|++++|++++.| +.|++||+.+++.+..+.+ |...|.+++|+|
T Consensus 222 ~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 222 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC
Confidence 8886 7899999999999999999999 9999999999999999999 999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCccceEEEEe------eC----------------CceEEEEEcCCC----------CeEEE
Q 004270 568 DGKWLLSSGMDGSLRIWDVILARQIDAIH------VD----------------VSITALSLSPNM----------DVLAT 615 (764)
Q Consensus 568 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~----------------~~v~~l~~sp~g----------~~lat 615 (764)
++++|++++.||.|++||+.+++.+..+. .+ .+|++++|+|+| ++|++
T Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 99999999999999999999999999998 54 569999999999 79999
Q ss_pred EEeCCCeEEEEeccc
Q 004270 616 AHVDQNGVYLWVNRC 630 (764)
Q Consensus 616 ~~~d~~~i~lW~~~~ 630 (764)
++.|+ .|++|+++.
T Consensus 382 ~~~dg-~i~iw~~~~ 395 (397)
T 1sq9_A 382 VCLDR-SIRWFREAG 395 (397)
T ss_dssp EETTT-EEEEEEEEC
T ss_pred ecCCC-cEEEEEcCC
Confidence 99999 699999864
No 72
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=332.55 Aligned_cols=325 Identities=15% Similarity=0.192 Sum_probs=260.0
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEee-CCCCEEEEEeCCCcEEEEECCC---ceeee-e
Q 004270 188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS-DGQPLLASGASSGVISIWNLEK---RRLQS-V 262 (764)
Q Consensus 188 ~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~-d~~~~l~sg~~dg~i~iwd~~~---~~~~~-~ 262 (764)
.|+|++..+++++ .|+ .+++.+..+..+|.+.|++++|+| +++ +|++|+.||.|++||+.+ +.... .
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCccccee
Confidence 4677787777654 387 558888888666789999999999 888 999999999999999877 43221 2
Q ss_pred eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 263 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
....|...|.+++|+|++.+|++++.|+.|++|+++.... ........+| .+..+.++|++
T Consensus 106 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~--~i~~~~~~~~~---------------- 166 (437)
T 3gre_A 106 LTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ-ESEVKFLNCE--CIRKINLKNFG---------------- 166 (437)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE-TTEEEEEEEE--EEEEEEGGGGS----------------
T ss_pred eeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC-Cceeeccccc--eeEEEEccCcc----------------
Confidence 2225999999999999999999999999999999852200 0222222222 33333333321
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
T Consensus 167 -------------------------------------------------------------------------------- 166 (437)
T 3gre_A 167 -------------------------------------------------------------------------------- 166 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEE--EccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270 423 NPTAVKACT--ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (764)
Q Consensus 423 ~~~~v~~~~--~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 500 (764)
+...+.++. ++++++++++|+.||.|++||+.++.....+.. ..|...|++++|+|++++|++++.||.|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i 240 (437)
T 3gre_A 167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN------SPRHGAVSSICIDEECCVLILGTTRGIIDI 240 (437)
T ss_dssp SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC------CGGGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc------CCCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 113445555 668899999999999999999999988887751 128999999999999999999999999999
Q ss_pred EECCCCCeeeeEe--cCcceEEEEEee----cCCEEEEEeCCCeEEEEEccCCeEEEEeecC------------------
Q 004270 501 WDFKGRDLKSRWE--VGCSLVKIVYHR----VNGLLATVADDLVIRLFDVVALRMVRKFEGH------------------ 556 (764)
Q Consensus 501 wd~~~~~~~~~~~--~~~~i~~~~~s~----~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h------------------ 556 (764)
||+++++++..+. +..+|.+++++| ++.+|++++.|+.|++||+.+++.+..+.+|
T Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (437)
T 3gre_A 241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE 320 (437)
T ss_dssp EETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred EEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence 9999999988874 457899996654 6779999999999999999999998888754
Q ss_pred --------CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee-------------------------------
Q 004270 557 --------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------------------------------- 597 (764)
Q Consensus 557 --------~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------------------- 597 (764)
...|++++|+ ++++|++++.|+.|++||+.+++.+..+..
T Consensus 321 ~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (437)
T 3gre_A 321 LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHS 399 (437)
T ss_dssp CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC------
T ss_pred ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccc
Confidence 4457888888 779999999999999999999988777663
Q ss_pred -------CCceEEEEEcCC--CCeEEEEEeCCCeEEEEe
Q 004270 598 -------DVSITALSLSPN--MDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 598 -------~~~v~~l~~sp~--g~~lat~~~d~~~i~lW~ 627 (764)
...|++++|+++ +.+|++++.|+ .|++|+
T Consensus 400 ~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG-~I~iw~ 437 (437)
T 3gre_A 400 VDDSLYHHDIINSISTCEVDETPLLVACDNSG-LIGIFQ 437 (437)
T ss_dssp -------CCCEEEEEEEESSSSEEEEEEETTS-CEEEEC
T ss_pred cCcccccccceeeEeeeccCCceEEEEEcCCc-eEEEeC
Confidence 445999999998 88999999999 599995
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.7e-37 Score=327.72 Aligned_cols=300 Identities=15% Similarity=0.179 Sum_probs=234.6
Q ss_pred CeEEEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCceEEEEe-ccCCCCEEEEEEeeC-CCCEEEEEeCCC
Q 004270 171 KKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSD-GQPLLASGASSG 247 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~fs~d-~~~~l~sg~~dg 247 (764)
.+......+|...|+|++|+| ++++||+|+.||.|+|||+.+++....+. .+|.+.|++++|+|. +. +|++|+.||
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~-~l~s~s~D~ 187 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN-QFYASSMEG 187 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT-EEEEECSSS
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC-EEEEEeCCC
Confidence 344556678899999999999 56799999999999999998877555443 345889999999984 55 999999999
Q ss_pred cEEEEECCCceeeeeee-cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270 248 VISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (764)
+|++||++++....... ..+...+.+++|+|++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-----~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-----ELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----BCCCSBCCSSCEEEEEECTTC
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----eeEEEecccceEEeeeecCCC
Confidence 99999998765443332 123446789999999999999999999999998643 455678999999999999977
Q ss_pred C-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEE
Q 004270 327 R-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (764)
Q Consensus 327 ~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (764)
. ++++++.|+.|++||+++......+.
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~---------------------------------------------------- 290 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFL---------------------------------------------------- 290 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCS----------------------------------------------------
T ss_pred ceEEEEecCcceeeEEecccccccceEE----------------------------------------------------
Confidence 5 78899999999999986543211110
Q ss_pred EccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC
Q 004270 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (764)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (764)
. ..+|...|++++|+|+
T Consensus 291 -------------------------------------------------------~--------~~~h~~~v~~~~~spd 307 (435)
T 4e54_B 291 -------------------------------------------------------Y--------SLPHRHPVNAACFSPD 307 (435)
T ss_dssp -------------------------------------------------------B--------CCBCSSCEEECCBCTT
T ss_pred -------------------------------------------------------E--------eeeccccccceeECCC
Confidence 0 0278888999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEecC-------cceEEEEEeecCCEEEEEe------------CCCeEEEEEccC
Q 004270 486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVA------------DDLVIRLFDVVA 546 (764)
Q Consensus 486 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~~~la~~~------------~d~~i~v~d~~~ 546 (764)
+++|++++.||.|++||+.+++....+..+ ..+....|+|++.+++++. .++.|++||..+
T Consensus 308 g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 308 GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred CCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 999999999999999999888766655432 1234556777777777664 345799999999
Q ss_pred CeEEEEee-cCCCCeeEE-EEcCCCcEEEEEeCCCcEEEEEcCccceE
Q 004270 547 LRMVRKFE-GHTDRITDF-CFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (764)
Q Consensus 547 ~~~~~~~~-~h~~~i~~l-~~s~dg~~l~s~s~dg~i~iwd~~~~~~~ 592 (764)
++.+..+. +|...|.++ +|+|+|++|++|+ |++|+|||+++|+..
T Consensus 388 g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 388 GKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 99988865 688889987 6999999999876 889999999988753
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=308.66 Aligned_cols=295 Identities=16% Similarity=0.255 Sum_probs=256.3
Q ss_pred eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (764)
Q Consensus 261 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i 340 (764)
..+. +|.+.|++++|+|++++|++++.|+.|++|++... ..+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 26 ~~l~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLT-GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG----ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEE-CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred EEEE-EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3455 89999999999999999999999999999998765 567778899999999999999999999999999999
Q ss_pred EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (764)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (764)
||+.+++....+.
T Consensus 101 wd~~~~~~~~~~~------------------------------------------------------------------- 113 (369)
T 3zwl_B 101 WDVSNGQCVATWK------------------------------------------------------------------- 113 (369)
T ss_dssp EETTTCCEEEEEE-------------------------------------------------------------------
T ss_pred EECCCCcEEEEee-------------------------------------------------------------------
Confidence 9987654332221
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECcCCcccceecCc---cccccccccC--cEEEEEECCCCCEEE
Q 004270 421 PENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDM---SERSNYAHNG--EVVGVACDSTNTLMI 490 (764)
Q Consensus 421 ~~~~~~v~~~~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~---~~~~~~~h~~--~v~~l~~~~~~~~l~ 490 (764)
+...+.+++|+|+++++++++.+ |.|.+|++..+.....+... .......|.. .+.+++|+|++++++
T Consensus 114 --~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (369)
T 3zwl_B 114 --SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII 191 (369)
T ss_dssp --CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred --cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEE
Confidence 23789999999999999999999 99999999887654333211 1111234555 899999999999999
Q ss_pred EEeCCCeEEEEECCC-CCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCC
Q 004270 491 SAGYHGDIKVWDFKG-RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (764)
Q Consensus 491 s~~~dg~v~iwd~~~-~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~d 568 (764)
+++.||.|++||+.+ .+.+..+..+ ..+.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+..++|+|+
T Consensus 192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 270 (369)
T 3zwl_B 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPL 270 (369)
T ss_dssp EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSS
T ss_pred EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCC
Confidence 999999999999998 6777777754 889999999999999999999999999999999999888 7788999999999
Q ss_pred CcEEEEEeCCC--------------cEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270 569 GKWLLSSGMDG--------------SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631 (764)
Q Consensus 569 g~~l~s~s~dg--------------~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~ 631 (764)
++++++++.++ .+++||+.+++.+..+..|. .|++++|+|+|++|++++.|+ .|++|+++..
T Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~v~iw~~~~~ 347 (369)
T 3zwl_B 271 KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG-FIRLHHFEKS 347 (369)
T ss_dssp SSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEEECHH
T ss_pred CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC-eEEEEECccc
Confidence 99999999888 89999999999999998665 599999999999999999999 6999998754
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.9e-36 Score=312.59 Aligned_cols=296 Identities=13% Similarity=0.129 Sum_probs=228.2
Q ss_pred ccCeeEEEEecCCCEEEEEcCC-------CcEEEEEecCCCCCce------eeEeccCCCCCCeeEEEecCCCEEEEEeC
Q 004270 268 DNAIISLHFFANEPVLMSASAD-------NSIKMWIFDTTDGDPR------LLRFRSGHSAPPLCIRFYANGRHILSAGQ 334 (764)
Q Consensus 268 ~~~v~~l~~~~~~~~l~s~~~d-------~~i~vw~~~~~~~~~~------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~ 334 (764)
..+|++++|+||+++|++||.| +.|++|+++....... ....+.+|...|.++++. +..++++..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999999754 3599999976643211 112456888889888764 557777654
Q ss_pred -----------CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 335 -----------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 335 -----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
|+.+|+|++.........
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~--------------------------------------------------- 120 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEF--------------------------------------------------- 120 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEE---------------------------------------------------
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEE---------------------------------------------------
Confidence 556666665443211110
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 481 (764)
+. .........+...+.+++|||||+++++++ .|+.|++||+.++.....+ .|.+.|.+++
T Consensus 121 -~~-------~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~---------~~~~~V~~v~ 183 (365)
T 4h5i_A 121 -LT-------SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI---------ETRGEVKDLH 183 (365)
T ss_dssp -EE-------EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE---------ECSSCCCEEE
T ss_pred -ee-------eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe---------CCCCceEEEE
Confidence 00 011111223346789999999999987665 6899999999999887765 5778899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe---cCcceEEEEEeecCCEEEEEeCCC----eEEEEEccCCeE----E
Q 004270 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGLLATVADDL----VIRLFDVVALRM----V 550 (764)
Q Consensus 482 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~la~~~~d~----~i~v~d~~~~~~----~ 550 (764)
|+|+|+++++++.+ .+++|+..+++.+.... +...+.+++|+|+++++++++.|+ .+++|++..... .
T Consensus 184 fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~ 262 (365)
T 4h5i_A 184 FSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS 262 (365)
T ss_dssp ECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred EccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence 99999999998854 56677777666554332 347899999999999999999887 688999877653 4
Q ss_pred EEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE-eeCC-ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 551 ~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~-~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
..+.+|...|++++|||||++||+|+.|++|+|||+.+++++..+ ..|. +|++++|||||++||+++.|+ +|+||++
T Consensus 263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-tvrvw~i 341 (365)
T 4h5i_A 263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN-TIHIIKL 341 (365)
T ss_dssp EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS-EEEEEEC
T ss_pred eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC-eEEEEEc
Confidence 567889999999999999999999999999999999999999886 5554 599999999999999999999 7999999
Q ss_pred ccccCCC
Q 004270 629 RCMFSGD 635 (764)
Q Consensus 629 ~~~~~~~ 635 (764)
...|...
T Consensus 342 p~~~~~~ 348 (365)
T 4h5i_A 342 PLNYANY 348 (365)
T ss_dssp CTTTTC-
T ss_pred CCCCcCc
Confidence 8766643
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2e-36 Score=315.78 Aligned_cols=322 Identities=15% Similarity=0.189 Sum_probs=230.9
Q ss_pred eEEEEeccCCCCEEEEEEeeC---CCCEEEEEeCCCcEEEEECCCceeeeeeec----ccccCeeEEEEecC----CCEE
Q 004270 215 ELVTFTHSMRGAVTALAFSSD---GQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFAN----EPVL 283 (764)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~d---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~h~~~v~~l~~~~~----~~~l 283 (764)
....+..+|.++|++++|+|+ +...+++++.++.|++||+.+++.+..+.. .|...|.+++|+|+ +++|
T Consensus 9 ~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 9 CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred EEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 344566677999999999984 444677777788999999998877666651 25578999999999 6699
Q ss_pred EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHh
Q 004270 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (764)
++++.|+.|++|++... +.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+++....+.
T Consensus 89 ~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------- 155 (366)
T 3k26_A 89 AVAGSRGIIRIINPITM----QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG--------- 155 (366)
T ss_dssp EEEETTCEEEEECTTTC----CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC---------
T ss_pred EEecCCCEEEEEEchhc----eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec---------
Confidence 99999999999988765 56777789999999999999 99999999999999999986543222110
Q ss_pred hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004270 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442 (764)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 442 (764)
....+...+.+++|+|++++++++
T Consensus 156 --------------------------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~ 179 (366)
T 3k26_A 156 --------------------------------------------------------GVEGHRDEVLSADYDLLGEKIMSC 179 (366)
T ss_dssp --------------------------------------------------------STTSCSSCEEEEEECTTSSEEEEE
T ss_pred --------------------------------------------------------ccccccCceeEEEECCCCCEEEEe
Confidence 001223444444444444444444
Q ss_pred ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEE
Q 004270 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV 522 (764)
Q Consensus 443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~ 522 (764)
+.||.|++||+.++.... .... .+.++|++..+.......... .......+...|.+++
T Consensus 180 ~~dg~i~i~d~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 180 GMDHSLKLWRINSKRMMN-----------AIKE---SYDYNPNKTNRPFISQKIHFP-------DFSTRDIHRNYVDCVR 238 (366)
T ss_dssp ETTSCEEEEESCSHHHHH-----------HHHH---HHTCCGGGCSSCCCCEEECCC-------SEEECSSCSSCCCEEE
T ss_pred cCCCCEEEEECCCCcccc-----------ccce---eEEecCCCCcccccceeeccC-------ccccccCCcceEEEEE
Confidence 444444444444322110 0000 122223222221111100000 0000011458899999
Q ss_pred EeecCCEEEEEeCCCeEEEEEccCCe--------------EEEEeecCCCCeeEEEEcCC--CcEEEEEeCCCcEEEEEc
Q 004270 523 YHRVNGLLATVADDLVIRLFDVVALR--------------MVRKFEGHTDRITDFCFSED--GKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 523 ~s~~~~~la~~~~d~~i~v~d~~~~~--------------~~~~~~~h~~~i~~l~~s~d--g~~l~s~s~dg~i~iwd~ 586 (764)
|+ ++++++++.|+.|++||+.+++ .+..+.+|...|++++|+|+ +++|++++.||.|++||+
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 98 8899999999999999998774 48889999999999999999 999999999999999999
Q ss_pred Cccce----EEEEeeC---CceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 587 ILARQ----IDAIHVD---VSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 587 ~~~~~----~~~~~~~---~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.+++. ...+..+ ..|++++|+|++++|++++.|+ .|++|++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~ 365 (366)
T 3k26_A 317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA-SIWRWDRL 365 (366)
T ss_dssp CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC-EEEEEEec
Confidence 98864 3466665 5699999999999999999999 69999975
No 77
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-35 Score=336.74 Aligned_cols=293 Identities=21% Similarity=0.308 Sum_probs=247.6
Q ss_pred eeeeecccccCeeEEEEecCC-CEEEEEcCCCcEEEEEecCCCCC-ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 260 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
...+. +|.+.|++++|+|++ .+|++|+.|++|++|++...... ......+.+|...|.+++|+|++++|++++.|++
T Consensus 375 ~~~l~-~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMR-AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEE-CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhcc-cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 34455 899999999999875 69999999999999998765332 2445677899999999999999999999999999
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
|++||+.++.....+
T Consensus 454 v~vwd~~~~~~~~~~----------------------------------------------------------------- 468 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRF----------------------------------------------------------------- 468 (694)
T ss_dssp EEEEETTTTEEEEEE-----------------------------------------------------------------
T ss_pred EEEEECCCCcceeEE-----------------------------------------------------------------
Confidence 999998765432221
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC--CEEEEEeCC
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--TLMISAGYH 495 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~d 495 (764)
.+|...|.+++|+|+++++++|+.|+.|++||........... ...+|...|.+++|+|++ ..+++++.|
T Consensus 469 ---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 540 (694)
T 3dm0_A 469 ---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE-----GGEGHRDWVSCVRFSPNTLQPTIVSASWD 540 (694)
T ss_dssp ---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-----STTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc-----CCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence 1466889999999999999999999999999986543322211 113789999999999987 689999999
Q ss_pred CeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEE
Q 004270 496 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (764)
Q Consensus 496 g~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s 574 (764)
++|++||+.++++...+..+ ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.. ...|.+++|+|++.+|++
T Consensus 541 ~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEE
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEE
Confidence 99999999999998888765 8899999999999999999999999999999999888875 467999999999998887
Q ss_pred EeCCCcEEEEEcCccceEEEEeeCC--------------------ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 575 SGMDGSLRIWDVILARQIDAIHVDV--------------------SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 575 ~s~dg~i~iwd~~~~~~~~~~~~~~--------------------~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
++ |+.|++||+.+++.+..+..+. .+++++|||+|++|++++.|+ .|++|++.
T Consensus 620 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg-~i~iW~i~ 692 (694)
T 3dm0_A 620 AT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG-VIRVWGIG 692 (694)
T ss_dssp EE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS-EEEEEEC-
T ss_pred Ec-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC-eEEEEecc
Confidence 65 5669999999999887775321 278999999999999999999 69999975
No 78
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-35 Score=297.99 Aligned_cols=284 Identities=18% Similarity=0.256 Sum_probs=242.0
Q ss_pred ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~ 293 (764)
+....+.. |.+.|++++| ++++ +|++|+.||.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.++
T Consensus 9 ~~~~~l~~-h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 9 QLSATLKG-HDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEEECC-CSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred HHHHHhhC-CCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 44455544 5899999999 8888 89999999999999999998888887 8999999999999999999999999999
Q ss_pred EEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
+|++..... ......+.+|...|.+++| +++++++++.|+.+++||. ..
T Consensus 85 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~-------------------------- 133 (313)
T 3odt_A 85 GVPLFATSG-EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GS-------------------------- 133 (313)
T ss_dssp EEETTCCTT-SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TE--------------------------
T ss_pred EEEeeecCC-CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--Cc--------------------------
Confidence 999876532 2345556789999999988 5678999999999999981 10
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
T Consensus 134 -------------------------------------------------------------------------------- 133 (313)
T 3odt_A 134 -------------------------------------------------------------------------------- 133 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEe--cCcceEEEEEeecCCEE
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKIVYHRVNGLL 530 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~i~~~~~s~~~~~l 530 (764)
....+ ..|...+.++++.| +++++++++.||.|++|| ..+....+. +...+.+++|+|++. +
T Consensus 134 ----~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 198 (313)
T 3odt_A 134 ----LVYNL--------QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-F 198 (313)
T ss_dssp ----EEEEE--------ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred ----EEEec--------ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-E
Confidence 00011 26888899999988 889999999999999999 444555554 458999999999988 9
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCC
Q 004270 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPN 609 (764)
Q Consensus 531 a~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~ 609 (764)
++++.|+.|++||+.+++.+..+.+|...|++++|+|++ .|++++.||.|++||+.+++++..+..+. +|.+++|+|+
T Consensus 199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence 999999999999999999999999999999999999999 58899999999999999999999998776 5999999999
Q ss_pred CCeEEEEEeCCCeEEEEeccc
Q 004270 610 MDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 610 g~~lat~~~d~~~i~lW~~~~ 630 (764)
++ +++++.|+ .|++|+++.
T Consensus 278 ~~-~~~~~~dg-~i~iw~~~~ 296 (313)
T 3odt_A 278 GD-IIVGSSDN-LVRIFSQEK 296 (313)
T ss_dssp SC-EEEEETTS-CEEEEESCG
T ss_pred CC-EEEEeCCC-cEEEEeCCC
Confidence 98 55688888 599999864
No 79
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.5e-35 Score=297.89 Aligned_cols=284 Identities=20% Similarity=0.297 Sum_probs=242.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004270 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262 (764)
Q Consensus 184 i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~ 262 (764)
.++|+||+++ +||+|. |++|+|||+.+++.+..+.. .|...|++++|+|+++ +|++|+.||.|++||+++++.+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEE
Confidence 5779999985 788765 89999999999999888763 4567899999999999 999999999999999999999999
Q ss_pred eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 263 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
+. +|...+.++.+ ++..+++++.++.+++|+..... ..+..+.+|...+..+.+.++++++++++.|+.|++||
T Consensus 105 ~~-~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 105 MT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp EE-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ec-CccceEEEeec--CCCEEEEEecCCceEeeecCCCc---eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence 88 89888877655 56799999999999999876543 45666789999999999999999999999999999999
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
+.+++......
T Consensus 179 ~~~~~~~~~~~--------------------------------------------------------------------- 189 (318)
T 4ggc_A 179 SAPGEGGWVPL--------------------------------------------------------------------- 189 (318)
T ss_dssp SSCBTTBSCCS---------------------------------------------------------------------
T ss_pred CCCCcccccce---------------------------------------------------------------------
Confidence 86543221100
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE---EEEeCCCeEE
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM---ISAGYHGDIK 499 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l---~s~~~dg~v~ 499 (764)
.. ...|.+.|.+++++|++..+ ++++.++.|+
T Consensus 190 -------------------------------------~~--------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 190 -------------------------------------QT--------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp -------------------------------------EE--------ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred -------------------------------------ee--------ecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 00 02567788888888876533 3566889999
Q ss_pred EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe--CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC
Q 004270 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~ 577 (764)
+||...............+..+.++++++.+++++ .|+.|++||+.+++++.++.+|.+.|++++|+|||++|+||+.
T Consensus 225 lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 225 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999999998888889999999999999888765 7999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCccc
Q 004270 578 DGSLRIWDVILAR 590 (764)
Q Consensus 578 dg~i~iwd~~~~~ 590 (764)
||+|+|||+.+..
T Consensus 305 D~~v~iWd~~~~d 317 (318)
T 4ggc_A 305 DETLRLWRCFELD 317 (318)
T ss_dssp TTEEEEECCSCCC
T ss_pred CCeEEEEECCCCC
Confidence 9999999997653
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=326.03 Aligned_cols=327 Identities=9% Similarity=0.051 Sum_probs=257.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce
Q 004270 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (764)
Q Consensus 179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~ 258 (764)
.....|.+++|||||+++|+++.|++|+ |...++.+ . +|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~-gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---N-CNSKNLFHVKEFPLE--------FENKLDFELAQQNG 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---S-SBGGGTEEEEEECCC--------CCCTTTTSCCCSSC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---c-CCCccEEEEEECCCC--------CcceEEEEeCCCce
Confidence 3467899999999999999999999999 77666655 3 458899999999998 45666666543222
Q ss_pred eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC-----CCeeEEEecCCCEEEEEe
Q 004270 259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA-----PPLCIRFYANGRHILSAG 333 (764)
Q Consensus 259 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~-----~v~~i~~~~~~~~l~s~~ 333 (764)
.+...|...|.+++|+|+|.+|++++.||.|++|+.+ .++..+. |.. .+.+++|+|||++|++|+
T Consensus 79 ---~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 79 ---LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp ---SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred ---EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 2222468899999999999999999999999999842 2555555 665 499999999999999999
Q ss_pred CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeec
Q 004270 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (764)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 413 (764)
.||+|++||+..+..... . .+.+
T Consensus 149 ~DGtVkIWd~~~~~l~~~-~-----------------------------------------------~i~l--------- 171 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTP-E-----------------------------------------------FYFE--------- 171 (588)
T ss_dssp TTSEEEEEECCCCTTTCC-C-----------------------------------------------CEEE---------
T ss_pred CCCEEEEEECCCCccccc-c-----------------------------------------------ceee---------
Confidence 999999999876432000 0 0000
Q ss_pred ceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc---ceecCccccccccccCcEEEEEECCCCCEEE
Q 004270 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (764)
Q Consensus 414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (764)
........+|...|.+++|+|+| +++++.|+.|++|++.++... ..+. .+|...|.+++|+ ++.++
T Consensus 172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-------~~h~~~V~svaFs--g~~LA 240 (588)
T 2j04_A 172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-------NASRRKITDLKIV--DYKVV 240 (588)
T ss_dssp EEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-------CCCSSCCCCEEEE--TTEEE
T ss_pred eeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-------ccccCcEEEEEEE--CCEEE
Confidence 00001112466899999999999 888999999999999887743 2332 2788999999999 68899
Q ss_pred EEeCCCeEEEEECCCCCe-eeeEecCcceEEEEE--eecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcC
Q 004270 491 SAGYHGDIKVWDFKGRDL-KSRWEVGCSLVKIVY--HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 491 s~~~dg~v~iwd~~~~~~-~~~~~~~~~i~~~~~--s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~ 567 (764)
+++ +++|++||+.+++. .....+...+..++| +|++..+++++.||+ ++|..+ .++|+|
T Consensus 241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~sp 302 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTA 302 (588)
T ss_dssp EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEEC
T ss_pred EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECC
Confidence 887 69999999998887 444456689999999 999999999999999 999987 267999
Q ss_pred CCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEe
Q 004270 568 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV 618 (764)
Q Consensus 568 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~ 618 (764)
|+..+++. |+++++|+...+. +..+.....|.+++|||||+.+|+++.
T Consensus 303 d~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 DNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEe
Confidence 99988774 9999999976444 444445445999999999999999875
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=317.40 Aligned_cols=353 Identities=14% Similarity=0.187 Sum_probs=257.4
Q ss_pred CCcEEEEEccCCcccccceeeEecCCccccEEEEeC-CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc------------
Q 004270 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHP-DTYLNKVIVGSQEGSLQLWNISTKKKLYEFK------------ 178 (764)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------ 178 (764)
++.+++|+++..+. ...+..|...+..++|+| ++ ++|++|+.||.|++||+.+++....+.
T Consensus 22 ~~~~~v~~~~~~~~----~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 22 ESTRRVLGLELNKD----RDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHTEEECTT----EEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred cCcceeeccccCcc----eeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence 45677888877766 566667888999999999 88 899999999999999999876554443
Q ss_pred -CCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC--CEEEEEeCCCcEEEEEC
Q 004270 179 -GWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ--PLLASGASSGVISIWNL 254 (764)
Q Consensus 179 -~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~--~~l~sg~~dg~i~iwd~ 254 (764)
+|...|.+++|+| ++.+|++++.||.|++||+.+++....+.. ...+.++.|++.+. .++++++.+|.|++||+
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 5999999999999 778999999999999999999998888874 57899999998543 28999999999999999
Q ss_pred CCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCcee------------eEeccCCCCCCeeEE
Q 004270 255 EKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRL------------LRFRSGHSAPPLCIR 321 (764)
Q Consensus 255 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~------------~~~~~~h~~~v~~i~ 321 (764)
++++.+..+. +|...|.+++|+|+++ ++++++.||.|++||+......... .....+|...|.+++
T Consensus 174 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 174 KSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred CCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 9999988888 8999999999999998 5899999999999998765421111 112257899999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCce
Q 004270 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (764)
Q Consensus 322 ~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (764)
|+|++++|++++.|+.+++||+.++..........
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------------------------------------- 287 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV--------------------------------------------- 287 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC---------------------------------------------
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccccc---------------------------------------------
Confidence 99999999999999999999998765433221100
Q ss_pred EEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481 (764)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 481 (764)
................+..+++++.++.|++||+.++.....+. +|...|++++
T Consensus 288 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~ 341 (408)
T 4a11_B 288 ------------------CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--------GHYKTVDCCV 341 (408)
T ss_dssp ------------------CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--------CCSSCEEEEE
T ss_pred ------------------cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--------cCCCeEEEEE
Confidence 00001112222233445677778889999999999999888875 8999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEee-cCCEEEEEeCCCeEEEEEccC
Q 004270 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 482 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~ 546 (764)
|+|++++|++++.||.|++||+.+++.+........... +.+ ....+.....++.+++|+...
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQ--LNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEeccc--cccccceeecccCccCceeecCCcc
Confidence 999999999999999999999999887766544432222 222 334555677889999998653
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=307.17 Aligned_cols=299 Identities=14% Similarity=0.232 Sum_probs=240.7
Q ss_pred CceeeeeeecccccCeeEEEEecCCCEE-EEEcC---CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC---CCE
Q 004270 256 KRRLQSVIREAHDNAIISLHFFANEPVL-MSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRH 328 (764)
Q Consensus 256 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~ 328 (764)
..+.+..+..+|...|.+++|+|+++.+ ++++. |+.|++|++.... .......+|..+|.+++|+|+ +++
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---LKLLREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---EEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---ccceeeecccCcEEEEEEcCCCCCCce
Confidence 3344444444899999999999999655 55655 8999999998653 122223379999999999998 699
Q ss_pred EEEEeCCCcEEEEEeeccc-ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270 329 ILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (764)
|++++.||.|++||+.+.. ....+
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~------------------------------------------------------- 107 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSV------------------------------------------------------- 107 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEE-------------------------------------------------------
T ss_pred EEEecCCCeEEEEeCCCCCccEEEE-------------------------------------------------------
Confidence 9999999999999987654 22111
Q ss_pred cceeecceeecCCCCCCCCeEEEE------EccCCCEEEEEecCCcEEEEECcCCc-ccceecCccccccccccCcEEEE
Q 004270 408 QNFVLGEHILRPCPENPTAVKACT------ISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGV 480 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~------~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l 480 (764)
..|...+.+++ ++|+++++++|+.||.|++||+.++. ....+.... ..+...+.++
T Consensus 108 -------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~v~~~ 170 (357)
T 3i2n_A 108 -------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ----GENKRDCWTV 170 (357)
T ss_dssp -------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT----TSCCCCEEEE
T ss_pred -------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC----CCCCCceEEE
Confidence 14557888884 57899999999999999999999887 454443100 1123488898
Q ss_pred E----ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEee---cCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 004270 481 A----CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR---VNGLLATVADDLVIRLFDVVALRMVRKF 553 (764)
Q Consensus 481 ~----~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~---~~~~la~~~~d~~i~v~d~~~~~~~~~~ 553 (764)
+ |+|+++++++++.||.|++||+.+++......+...+.+++|+| ++.++++++.|+.|++||+.+++.+..+
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 8 78899999999999999999999999888888889999999999 9999999999999999999887665444
Q ss_pred e-----cCCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCcc-------------------ceEEEEeeCC-ceEEEEEc
Q 004270 554 E-----GHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILA-------------------RQIDAIHVDV-SITALSLS 607 (764)
Q Consensus 554 ~-----~h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~-------------------~~~~~~~~~~-~v~~l~~s 607 (764)
. +|...|++++|+|+++ +|++++.||.|++||+.++ +++..+..|. +|++++|+
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 4 8999999999999999 8999999999999999854 3556666554 59999999
Q ss_pred CCCCeEE-EEEeCCCeEEEEeccc
Q 004270 608 PNMDVLA-TAHVDQNGVYLWVNRC 630 (764)
Q Consensus 608 p~g~~la-t~~~d~~~i~lW~~~~ 630 (764)
|+|++|+ +++.|+ .|++|++..
T Consensus 331 ~~~~~l~~s~~~d~-~i~iw~~~~ 353 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQ-TVRVLIVTK 353 (357)
T ss_dssp SSSTTEEEEEETTS-EEEEEEECC
T ss_pred CCCCeEEEEecCCC-cEEEEECCC
Confidence 9999999 788888 699999863
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-34 Score=303.49 Aligned_cols=303 Identities=16% Similarity=0.193 Sum_probs=250.7
Q ss_pred EecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 004270 133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV 210 (764)
Q Consensus 133 ~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~ 210 (764)
+..+...+..++|+|++ +++++++.+|.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDR--TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTTS--SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ecccCCCeEEEEECCCC--CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 34577788899999999 899999999999999999988 89999999999999999999999999999999999999
Q ss_pred cCCceEEEEe-ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee---eeeeecccccCeeEEEEecCCCEEEEE
Q 004270 211 RYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSA 286 (764)
Q Consensus 211 ~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~ 286 (764)
.+++....+. ..|...|.+++|+|+++ +|++++.||.|++||++.++. ...+..+|...|.+++|+|++++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence 9888665553 34578999999999998 999999999999999988763 444444789999999999999999999
Q ss_pred cCCCcEEEEEecCC--------------CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccc
Q 004270 287 SADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 352 (764)
Q Consensus 287 ~~d~~i~vw~~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~ 352 (764)
+.|+.|++||+... ......+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 99999999997522 1123567777899999999999999999999999999999998765433322
Q ss_pred cchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEE
Q 004270 353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI 432 (764)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~ 432 (764)
. .+...+.+++|
T Consensus 241 ~--------------------------------------------------------------------~~~~~v~~~~~ 252 (372)
T 1k8k_C 241 A--------------------------------------------------------------------SETLPLLAVTF 252 (372)
T ss_dssp E--------------------------------------------------------------------CSSCCEEEEEE
T ss_pred c--------------------------------------------------------------------cCCCCeEEEEE
Confidence 1 23478999999
Q ss_pred ccCCCEEEEEecCCcEEEEECcC--Ccc--cceec----------------------Ccc-------ccccccccCcEEE
Q 004270 433 SACGNFAVLGTAGGWIERFNLQS--GIS--RGSYL----------------------DMS-------ERSNYAHNGEVVG 479 (764)
Q Consensus 433 s~~g~~l~~g~~~g~i~i~~~~~--~~~--~~~~~----------------------~~~-------~~~~~~h~~~v~~ 479 (764)
+|+++++++| .+|.|++|++.+ +.. ...+. ... .....+|...|++
T Consensus 253 ~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 331 (372)
T 1k8k_C 253 ITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ 331 (372)
T ss_dssp EETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEE
T ss_pred ecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcce
Confidence 9999999888 999999999988 421 00000 000 1111489999999
Q ss_pred EEEC-CCC---CEEEEEeCCCeEEEEECCCCC
Q 004270 480 VACD-STN---TLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 480 l~~~-~~~---~~l~s~~~dg~v~iwd~~~~~ 507 (764)
++|. +++ ++|++++.||.|++|++.+++
T Consensus 332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 9966 666 999999999999999987653
No 84
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-35 Score=315.61 Aligned_cols=291 Identities=15% Similarity=0.194 Sum_probs=233.0
Q ss_pred eeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCc
Q 004270 260 QSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRA 337 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~ 337 (764)
..... +|...|++|+|+| ++.+|++|+.||.|++||++.... .......+|...|++++|+| ++++|++++.||+
T Consensus 112 ~~~~~-~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~--~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAA-PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK--PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEE-ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC--CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cccCC-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc--eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 33444 7889999999999 456999999999999998876543 34555679999999999998 7899999999999
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
|++||+....... +
T Consensus 189 v~iwd~~~~~~~~------------------------------------------------------------------~ 202 (435)
T 4e54_B 189 TRLQDFKGNILRV------------------------------------------------------------------F 202 (435)
T ss_dssp EEEEETTSCEEEE------------------------------------------------------------------E
T ss_pred EEEeeccCCceeE------------------------------------------------------------------E
Confidence 9999985432110 1
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEeCCC
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHG 496 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg 496 (764)
.....+...+.+++++|+++++++|+.+|.|++||+... ....+ .+|...|.+++|+|++. ++++++.|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~--------~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL--------RMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS--------BCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE--------ecccceEEeeeecCCCceEEEEecCcc
Confidence 111123356788999999999999999999999998643 33444 38999999999999876 788999999
Q ss_pred eEEEEECCCCCeeeeE----ecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC------eeEEEEc
Q 004270 497 DIKVWDFKGRDLKSRW----EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR------ITDFCFS 566 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~----~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~------i~~l~~s 566 (764)
.|++||+.+.+....+ .+...|.+++|+|++.+|++++.|+.|++||+.+++....+.+|... +....|+
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 9999999877654433 34588999999999999999999999999999999988888776532 3456788
Q ss_pred CCCcEEEEEe------------CCCcEEEEEcCccceEEEEee-C-CceEEE-EEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 567 EDGKWLLSSG------------MDGSLRIWDVILARQIDAIHV-D-VSITAL-SLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 567 ~dg~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~-~-~~v~~l-~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
|++.++++++ .++.|++||..+|+++..+.. | ..|.++ +|+|+|++||+++ |+ .|+||+.+.
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~-~i~iW~~~~ 430 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY-HILIWSQQE 430 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS-EEEECCCC-
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC-cEEEEECCc
Confidence 8887777664 246799999999999988753 3 347777 6999999999876 66 699999763
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=317.44 Aligned_cols=331 Identities=13% Similarity=0.207 Sum_probs=244.3
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC-------CCceeeEeccCCC------------CCCeeEEEecCC
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-------GDPRLLRFRSGHS------------APPLCIRFYANG 326 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~~~~~h~------------~~v~~i~~~~~~ 326 (764)
.|.+.|++++|+|++++|++|+.||.|++|++.... ........+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478899999999999999999999999999998654 2334577778998 889999999988
Q ss_pred --CEEEEEeCCCcEEEEEeecccccccccch-hhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 327 --RHILSAGQDRAFRLFSVIQDQQSRELSQR-HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 327 --~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
..|++++.|++|++|++............ ........ ......+.++..... +
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--------~--------------- 161 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRD-PTTVTTLRVPVFRPM--------D--------------- 161 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC---------CCCCCSCCCCEEEEE--------E---------------
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccC-cccccceEeccccch--------h---------------
Confidence 89999999999999999875432111000 00000000 000000000000000 0
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
|.... ........+|...|.+++|+|+|+++++| .||.|++||+.++...............+|...|.+++|+
T Consensus 162 -~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 235 (447)
T 3dw8_B 162 -LMVEA----SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH 235 (447)
T ss_dssp -EEEEE----EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC
T ss_pred -eeeec----cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC
Confidence 00000 11111223677899999999999999999 8999999999843332221111111234899999999999
Q ss_pred CCC-CEEEEEeCCCeEEEEECCCCCe----eeeEecCc-------------ceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270 484 STN-TLMISAGYHGDIKVWDFKGRDL----KSRWEVGC-------------SLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (764)
Q Consensus 484 ~~~-~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~-------------~i~~~~~s~~~~~la~~~~d~~i~v~d~~ 545 (764)
|++ ++|++++.||.|++||+.+++. ...+..+. .|.+++|+|++++|++++. +.|++||+.
T Consensus 236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence 998 9999999999999999999886 66666653 8999999999999999999 999999999
Q ss_pred C-CeEEEEeecCCCC---------------eeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEE--------------
Q 004270 546 A-LRMVRKFEGHTDR---------------ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-------------- 595 (764)
Q Consensus 546 ~-~~~~~~~~~h~~~---------------i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-------------- 595 (764)
+ ++++..+.+|... +..++|+|++++|++++.||.|++||+.+++.+...
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
T 3dw8_B 315 MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKP 394 (447)
T ss_dssp CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCC
T ss_pred CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCC
Confidence 7 8888899988642 234999999999999999999999999998876422
Q ss_pred -------------------eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 596 -------------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 596 -------------------~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.....|.+++|+|+|.+||+++.++ +++|.-+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~--~~~~~~~ 445 (447)
T 3dw8_B 395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN--LYIFQDK 445 (447)
T ss_dssp CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC--EEEEECC
T ss_pred ccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce--eeeeccc
Confidence 1223588999999999999998886 8999754
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-36 Score=318.42 Aligned_cols=339 Identities=9% Similarity=0.066 Sum_probs=233.8
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC--ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (764)
Q Consensus 177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~ 254 (764)
++.+.++|++++|+|++++||+|+.||.|++||+.++ +.+..+.. |...|.+++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTC-CEEEEETTSSEEEC--
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCC-EEEEEeCCCeEEEEEc
Confidence 3446779999999999999999999999999999988 56666655 488999999999998 8999999999999999
Q ss_pred CCce---eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccC-CCCCCeeEEEecCCCEEE
Q 004270 255 EKRR---LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHIL 330 (764)
Q Consensus 255 ~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~ 330 (764)
.+++ ....+. +|...|.+++|+|++++|++++.|+.|++|+++..... .....+.+ |...|.+++|+|++++|+
T Consensus 85 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 85 RPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-WVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp ----CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C-CCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-eeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 9887 455555 79999999999999999999999999999998765321 23455556 999999999999999999
Q ss_pred EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccce
Q 004270 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (764)
Q Consensus 331 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (764)
+++.|+.+++||+............ .|..- .
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~-----------------~ 193 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEAS--------------------------------VWGSR-----------------L 193 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSC--------------------------------SSCSC-----------------C
T ss_pred EEeCCCEEEEEEEEecccCCCcccc--------------------------------ccccc-----------------c
Confidence 9999999999998654322111000 00000 0
Q ss_pred eecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc----cceecCccccccccccCcEEEEEECCCC
Q 004270 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS----RGSYLDMSERSNYAHNGEVVGVACDSTN 486 (764)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (764)
.. ....... .|...+.+++|+|+|+++++|+.||.|++||+.++.. ...+. +|...|.+++|+|++
T Consensus 194 ~~-~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 194 PF-NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK--------LSQLPLRSLLWANES 263 (377)
T ss_dssp CE-EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE--------CSSSCEEEEEEEETT
T ss_pred ch-hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec--------CCCCceEEEEEcCCC
Confidence 00 1111122 5678999999999999999999999999999999887 55553 899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCC--eeeeEecC----------------cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270 487 TLMISAGYHGDIKVWDFKGRD--LKSRWEVG----------------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (764)
Q Consensus 487 ~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~----------------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~ 548 (764)
++|++++.++.+ +|+..... ....+... .....+.|++....+......+... .
T Consensus 264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~ 335 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------S 335 (377)
T ss_dssp EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------------
T ss_pred CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc-------c
Confidence 999988876666 66655322 12222211 1123333333222222111111110 1
Q ss_pred EEEEeecCCCCeeEEEEcCCC-c---EEEEEeCCCcEEEEEc
Q 004270 549 MVRKFEGHTDRITDFCFSEDG-K---WLLSSGMDGSLRIWDV 586 (764)
Q Consensus 549 ~~~~~~~h~~~i~~l~~s~dg-~---~l~s~s~dg~i~iwd~ 586 (764)
.......|.+.|+++++.++. . .|+|++.||.|++||+
T Consensus 336 ~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 336 ISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 112234699999999976543 3 6999999999999985
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1e-34 Score=300.88 Aligned_cols=282 Identities=11% Similarity=0.110 Sum_probs=226.6
Q ss_pred CCcceEEEEEeCCeEEEEECC----------eEEEEecCc----------e--EEEecccccceEEEEEeCCEEEEEe--
Q 004270 55 LPKKIRALASYRDYTFAAYGN----------HIAVVKRAH----------Q--VATWSRHSAKVNLLLLFGEHILSID-- 110 (764)
Q Consensus 55 ~~~~I~~~~~~~~~~~~a~g~----------~i~vw~~~~----------~--~~~~~~h~~~v~~l~~~g~~l~s~~-- 110 (764)
...||.|++|+||+.++++|+ .|++|+... . ...+.+|...|.+++++++.++++.
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~ 92 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNE 92 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCC
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECC
Confidence 356899999999999998853 399998421 1 1237899999999999999988874
Q ss_pred ---------cCCcEEEEEccCCcccccceeeEec-----CCccccEEEEeCCCCCCEEEEE--eCCCcEEEEeCCCCeEE
Q 004270 111 ---------IDGNMFIWAFKGIEENLAPVGHVKL-----DDKFTPTCIMHPDTYLNKVIVG--SQEGSLQLWNISTKKKL 174 (764)
Q Consensus 111 ---------~dg~v~vWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~l~~~--~~dg~i~iwd~~~~~~~ 174 (764)
.|+++++|++............... +...+..++|+|++ ++++++ +.|++|++||+++++++
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg--~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG--TVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS--SCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC--CEEEEEECCCCCEEEEeECCCCcEE
Confidence 4778999999876653333332222 23345678899999 666654 47899999999999999
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEE-eccCCCCEEEEEEeeCCCCEEEEEeCCC----cE
Q 004270 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSG----VI 249 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~l~fs~d~~~~l~sg~~dg----~i 249 (764)
..+. |...|.+++|+|+|++|++++.+ .+++|+..+++.+... ...|...|.+++|+|+++ ++++++.++ .+
T Consensus 171 ~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 171 FEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVL 247 (365)
T ss_dssp EEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEE
T ss_pred EEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEE
Confidence 9987 67889999999999999999854 5677777777766543 344578899999999999 888888776 68
Q ss_pred EEEECCCcee----eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe-ccCCCCCCeeEEEec
Q 004270 250 SIWNLEKRRL----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF-RSGHSAPPLCIRFYA 324 (764)
Q Consensus 250 ~iwd~~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~-~~~h~~~v~~i~~~~ 324 (764)
++|++..... ...+. +|...|++++|+|++++|++|+.|++|++||+.+. +++.. +.+|..+|++++|+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSp 322 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISP 322 (365)
T ss_dssp EEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECT
T ss_pred eecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECC
Confidence 8899876643 23344 78999999999999999999999999999998765 55554 579999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecc
Q 004270 325 NGRHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 325 ~~~~l~s~~~dg~i~i~d~~~~ 346 (764)
||++|++++.|++|+||++...
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999644
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.3e-34 Score=302.73 Aligned_cols=288 Identities=18% Similarity=0.237 Sum_probs=241.8
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE
Q 004270 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV 217 (764)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~ 217 (764)
...+.+++. +.|++|. |++|+|||..+|++++.+. +|...|++++|+|+|++||+|+.||.|++||+.+++.+.
T Consensus 108 ~~~l~wS~~---n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 108 LNLVDWSSG---NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp CBCEEECTT---SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeEEECCC---CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 345668764 4677764 8999999999999887765 677889999999999999999999999999999999999
Q ss_pred EEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (764)
.+..+ ...+.+++++ +. +|++|+.|+.+++||..... .+..+. +|...+..+.|+|++.++++++.|+.+++|+
T Consensus 184 ~~~~h-~~~v~~~s~~--~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 184 NMTSH-SARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EECCC-SSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeCC-CCceEEEeeC--CC-EEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCCeeeeeeccccceEEe
Confidence 88765 7889888875 45 89999999999999988764 445555 8999999999999999999999999999999
Q ss_pred ecCCCCCceeeEeccCCCCCCeeEEEecCC-CEEEEE--eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSA--GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
..........+.....|...|.+++|+|++ ..++++ +.|++|++||+.++.....+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-------------------- 318 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-------------------- 318 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--------------------
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--------------------
Confidence 987766656677778999999999999954 555554 479999999987765433321
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEE
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERF 451 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~ 451 (764)
....+.++.++++++.+++++ .||.|++|
T Consensus 319 -------------------------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iw 349 (420)
T 4gga_A 319 -------------------------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIW 349 (420)
T ss_dssp -------------------------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred -------------------------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEE
Confidence 126788999999999998875 78999999
Q ss_pred ECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 004270 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 513 (764)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 513 (764)
|+.++..+..+. +|.+.|++++|+|+|++|+||+.|++|++||+.........+
T Consensus 350 d~~~~~~v~~l~--------gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 350 KYPTMAKVAELK--------GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp ETTTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred ECCCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 999999988875 999999999999999999999999999999998765554443
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-37 Score=319.98 Aligned_cols=321 Identities=10% Similarity=0.093 Sum_probs=254.6
Q ss_pred CccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceE
Q 004270 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL 216 (764)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~ 216 (764)
...+..++|+||| +.+++++.|++|+ |...++.+ ++|...|.+++|+|+| .++.+.+|+ ++..
T Consensus 15 ~~~v~sv~~SpDG--~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~ 77 (588)
T 2j04_A 15 EDWKNNLTWARDG--TLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFEL---AQQN 77 (588)
T ss_dssp SSSSCCEEECTTS--CEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSC---CCSS
T ss_pred hccEEEEEECCCC--CEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEe---CCCc
Confidence 3667889999999 8999999999999 76666544 7999999999999998 455555555 3333
Q ss_pred EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc-----CeeEEEEecCCCEEEEEcCCCc
Q 004270 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN-----AIISLHFFANEPVLMSASADNS 291 (764)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~~~d~~ 291 (764)
..+...+...|.+++|+|||. .||+++.||.|++||.++ ++..+. |.. .|.+++|+|||++|++|+.||+
T Consensus 78 ~~~~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred eEeecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 333323378899999999999 899999999999999544 444444 444 5999999999999999999999
Q ss_pred EEEEEecCCCCC-c--eeeEec----cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270 292 IKMWIFDTTDGD-P--RLLRFR----SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364 (764)
Q Consensus 292 i~vw~~~~~~~~-~--~~~~~~----~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (764)
|++|++..+... + -.+..+ .+|...|.+++|+||| +++++.|+++++|++........
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~------------- 217 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPV------------- 217 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCC-------------
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccc-------------
Confidence 999998765311 1 134443 6788999999999999 88999999999999876542100
Q ss_pred cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (764)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 444 (764)
.+.+. ..|...|.+++|+ |+.+++++
T Consensus 218 -------------------------------------------------~~tL~--~~h~~~V~svaFs--g~~LASa~- 243 (588)
T 2j04_A 218 -------------------------------------------------SRMIQ--NASRRKITDLKIV--DYKVVLTC- 243 (588)
T ss_dssp -------------------------------------------------EEEEE--CCCSSCCCCEEEE--TTEEEEEC-
T ss_pred -------------------------------------------------eeeec--ccccCcEEEEEEE--CCEEEEEe-
Confidence 00000 1344789999999 68999887
Q ss_pred CCcEEEEECcCCcccceecCccccccccccCcEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEE
Q 004270 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV 522 (764)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~ 522 (764)
+|.|++|++.++...... .+|...|..++| +|++..+++++.||+ ++|.++ .++
T Consensus 244 ~~tIkLWd~~~~~~~~~~--------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------~~~ 299 (588)
T 2j04_A 244 PGYVHKIDLKNYSISSLK--------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------ELH 299 (588)
T ss_dssp SSEEEEEETTTTEEEEEE--------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------SEE
T ss_pred CCeEEEEECCCCeEEEEE--------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------cEE
Confidence 699999999988774433 289999999999 999999999999999 999987 256
Q ss_pred EeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 523 ~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s 576 (764)
++||+..+++. |+++++|+...+. ...+.+ ...|.+++|||||+.+|+++
T Consensus 300 ~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 300 VTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp EECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 99999988875 9999999986554 334444 66799999999999999886
No 90
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-34 Score=303.49 Aligned_cols=277 Identities=16% Similarity=0.222 Sum_probs=233.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKG-WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 230 (764)
+.+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|.++
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~ 182 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH-QARVGCL 182 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEE
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC-CCceEEE
Confidence 3488899999999999999999888876 8999999999999999999999999999999999999988754 8899999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECC-CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270 231 AFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (764)
+|+ +. ++++|+.||.|++||++ .+.....+. +|.+.|.+++|+|++++|++++.|+.|++||+... .....
T Consensus 183 ~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~ 254 (401)
T 4aez_A 183 SWN--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS----IPKFT 254 (401)
T ss_dssp EEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS----SEEEE
T ss_pred EEC--CC-EEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC----CccEE
Confidence 994 44 89999999999999998 455666666 89999999999999999999999999999998764 56667
Q ss_pred ccCCCCCCeeEEEecCC-CEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270 310 RSGHSAPPLCIRFYANG-RHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~~~-~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (764)
+.+|...|.+++|+|++ ..+++++ .|+.|++||+.++.....+.
T Consensus 255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--------------------------------- 301 (401)
T 4aez_A 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--------------------------------- 301 (401)
T ss_dssp ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---------------------------------
T ss_pred ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---------------------------------
Confidence 77899999999999966 4555654 69999999987654333221
Q ss_pred ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE--EecCCcEEEEECcCCcccceecC
Q 004270 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRGSYLD 464 (764)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~~~~~~ 464 (764)
+...+.+++|+|+++++++ |+.+|.|++|++.++.......
T Consensus 302 ------------------------------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~- 344 (401)
T 4aez_A 302 ------------------------------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD- 344 (401)
T ss_dssp ------------------------------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-
T ss_pred ------------------------------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE-
Confidence 2267999999999999999 5589999999999876554432
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 512 (764)
..+|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 345 -----~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 345 -----IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp -----EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred -----ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 1489999999999999999999999999999999988776544
No 91
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-35 Score=309.70 Aligned_cols=301 Identities=13% Similarity=0.152 Sum_probs=230.3
Q ss_pred EecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 004270 133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK--KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV 210 (764)
Q Consensus 133 ~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~ 210 (764)
...+...+..++|+|++ ++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 7 ~~~~~~~v~~~~~s~~g--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQR--TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEECSSCCSCCEECSSS--SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred EecCCCcEEEEEECCCC--CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 34456678889999999 89999999999999999988 788889999999999999999999999999999999999
Q ss_pred cCCc---eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---eeeeeecccccCeeEEEEecCCCEEE
Q 004270 211 RYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEPVLM 284 (764)
Q Consensus 211 ~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~ 284 (764)
.+++ ....+.. |...|.+++|+|+++ +|++|+.|+.|++||+++++ ....+...|...|.+++|+|++++|+
T Consensus 85 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 85 RPDGTWKQTLVLLR-LNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp ----CCCCEEECCC-CSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CCCCceeeeeEecc-cCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 9887 4555544 488999999999998 89999999999999999887 46666633999999999999999999
Q ss_pred EEcCCCcEEEEEecCCC--------------CCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 285 SASADNSIKMWIFDTTD--------------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 285 s~~~d~~i~vw~~~~~~--------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
+++.|+.|++||+.... ....++..+ +|...|.+++|+|++++|++++.|+.|++||+.++....
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 99999999999986332 112455555 899999999999999999999999999999998765411
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
.. +.....|...+.++
T Consensus 242 ~~----------------------------------------------------------------~~~~~~~~~~v~~~ 257 (377)
T 3dwl_C 242 RA----------------------------------------------------------------LITVKLSQLPLRSL 257 (377)
T ss_dssp EE----------------------------------------------------------------CCCEECSSSCEEEE
T ss_pred ee----------------------------------------------------------------eEeecCCCCceEEE
Confidence 10 11112455789999
Q ss_pred EEccCCCEEEEEecCCcEEEEECcCCc-c-cceecC------------------------------------------cc
Q 004270 431 TISACGNFAVLGTAGGWIERFNLQSGI-S-RGSYLD------------------------------------------MS 466 (764)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~-~-~~~~~~------------------------------------------~~ 466 (764)
+|+|+|+++++|+.++.+ +|+..... . ...+.. ..
T Consensus 258 ~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 336 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSI 336 (377)
T ss_dssp EEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------
T ss_pred EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccc
Confidence 999999999999776666 66654221 0 000000 00
Q ss_pred ccccccccCcEEEEEECCCC-C---EEEEEeCCCeEEEEEC
Q 004270 467 ERSNYAHNGEVVGVACDSTN-T---LMISAGYHGDIKVWDF 503 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~-~---~l~s~~~dg~v~iwd~ 503 (764)
......|...|+++++.+.. . .++|++.||.|++||+
T Consensus 337 ~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 337 SSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00112499999999976543 3 6999999999999985
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.9e-34 Score=305.44 Aligned_cols=296 Identities=20% Similarity=0.307 Sum_probs=228.3
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
..+|...|.++.+ ++++|++|+.||.|++||+.+++.+..+..+ .+.|.+++| +++ +|++|+.||.|++||+.+
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQY--DER-VIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEEC--CSS-EEEEEETTSCEEEEESSS
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-CCcEEEEEE--CCC-EEEEEcCCCeEEEEECCC
Confidence 3466778888876 7899999999999999999999999888765 889999999 666 999999999999999999
Q ss_pred ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 257 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 257 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
++.+..+. +|...|.+++|++ ..+++++.|+.|++||+...... .......+|...|.+++| +++++++++.||
T Consensus 203 ~~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg 276 (435)
T 1p22_A 203 GEMLNTLI-HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDF--DDKYIVSASGDR 276 (435)
T ss_dssp CCEEEEEC-CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred CcEEEEEc-CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence 99999988 8999999999964 59999999999999998765322 233566788888888888 677888888888
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
.|++||+.++..
T Consensus 277 ~i~vwd~~~~~~-------------------------------------------------------------------- 288 (435)
T 1p22_A 277 TIKVWNTSTCEF-------------------------------------------------------------------- 288 (435)
T ss_dssp EEEEEETTTCCE--------------------------------------------------------------------
T ss_pred eEEEEECCcCcE--------------------------------------------------------------------
Confidence 888888654321
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (764)
...+ .+|...|.+++++ ++++++++.||
T Consensus 289 ------------------------------------------~~~~--------~~~~~~v~~~~~~--~~~l~~g~~dg 316 (435)
T 1p22_A 289 ------------------------------------------VRTL--------NGHKRGIACLQYR--DRLVVSGSSDN 316 (435)
T ss_dssp ------------------------------------------EEEE--------ECCSSCEEEEEEE--TTEEEEEETTS
T ss_pred ------------------------------------------EEEE--------cCCCCcEEEEEeC--CCEEEEEeCCC
Confidence 1112 2677778888874 56888888888
Q ss_pred eEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe---------EEEEeecCCCCeeEEEEc
Q 004270 497 DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR---------MVRKFEGHTDRITDFCFS 566 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~---------~~~~~~~h~~~i~~l~~s 566 (764)
.|++||+.+++.+..+..+ ..+.++++ ++.+|++|+.||.|++||+.+++ .+..+.+|.+.|++++|
T Consensus 317 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 393 (435)
T 1p22_A 317 TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF- 393 (435)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-
T ss_pred eEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-
Confidence 8888888888888877755 67888887 68888999999999999987766 78899999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcC
Q 004270 567 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP 608 (764)
Q Consensus 567 ~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp 608 (764)
++++|++++.||+|++||+.++..........+..++.|.+
T Consensus 394 -~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 434 (435)
T 1p22_A 394 -DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434 (435)
T ss_dssp -CSSCEEECCSSSEEEEEC-----------------------
T ss_pred -CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence 78899999999999999999887776666556666666654
No 93
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=7.4e-33 Score=327.59 Aligned_cols=443 Identities=12% Similarity=0.061 Sum_probs=335.1
Q ss_pred cccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC------CcEEE
Q 004270 92 HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQL 165 (764)
Q Consensus 92 h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d------g~i~i 165 (764)
+...+....+.+++|+.++. +.|.+|++.+++. ..+..+...+...+|+|++ ++|+.++.+ ..|++
T Consensus 13 ~~~~~~~~~~S~~~iaf~~~-~~l~~~~~~gg~~-----~~lt~~~~~v~~~~~SPDG--~~la~~s~~~~~~~~~~i~~ 84 (1045)
T 1k32_A 13 MPNLLLNPDIHGDRIIFVCC-DDLWEHDLKSGST-----RKIVSNLGVINNARFFPDG--RKIAIRVMRGSSLNTADLYF 84 (1045)
T ss_dssp CCCCCEEEEEETTEEEEEET-TEEEEEETTTCCE-----EEEECSSSEEEEEEECTTS--SEEEEEEEESTTCCEEEEEE
T ss_pred ccceEeCcEEeCCEEEEEEC-CcEEEEECCCCcE-----EEeeeCCCcccCeEECCCC--CEEEEEEeeccCCCCCeEEE
Confidence 45567777888889888875 7899999988765 4556677888899999999 888887653 47999
Q ss_pred EeCCCCeEEEEEcCCCCCe-------EEEEEcCCCCEEEEEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEE
Q 004270 166 WNISTKKKLYEFKGWGSSI-------SSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAF 232 (764)
Q Consensus 166 wd~~~~~~~~~~~~h~~~i-------~~~~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~f 232 (764)
||+.+++ ...+..|...+ ..++|||||+++++++.+ ..|.+|++.+++.. .+..+ ....++|
T Consensus 85 ~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~---~~~~~~~ 159 (1045)
T 1k32_A 85 YNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLNLG---PATHILF 159 (1045)
T ss_dssp EETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECCSC---SCSEEEE
T ss_pred EECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE-EecCC---Ccceeee
Confidence 9998877 57788888888 999999999977777644 46888888776643 33332 2346779
Q ss_pred eeCCCCEEEEEeC------------CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 233 SSDGQPLLASGAS------------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 233 s~d~~~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
+| | ++++++. +....+|....+.....+. +|...+.++.|+++ .++++++.|+.+++|.++..
T Consensus 160 sp-G--~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~-~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 160 AD-G--RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp ET-T--EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred CC-C--EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc-CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence 99 6 7777652 2345666433333344454 89999999999998 67778888999999998764
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
... ...+..|. .+...+|+|||+.++++. ++.|++|++... ....+....
T Consensus 235 g~~---~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~------------------------ 284 (1045)
T 1k32_A 235 GKD---LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGD------------------------ 284 (1045)
T ss_dssp SCS---CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCC------------------------
T ss_pred CCc---ceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCc------------------------
Confidence 432 23333444 467789999999998875 888999987221 111110000
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECcCCccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERFNLQSGISR 459 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~~g~i~i~~~~~~~~~ 459 (764)
.........+...+.+++|+ |+|+++++++ ++.+.+|+..++...
T Consensus 285 ---------------------------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 285 ---------------------------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL 330 (1045)
T ss_dssp ---------------------------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred ---------------------------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence 00000000122467889999 9999999887 889999999877654
Q ss_pred ceecCccccccccccC-cEEEEEECCCCCEEEEEeCCCeEE-EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC
Q 004270 460 GSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIK-VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL 537 (764)
Q Consensus 460 ~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~ 537 (764)
. + ..|.. .+..++|+ +|+.+++++.++.+. +|++.+++......+...+..++|+|||++|++++.++
T Consensus 331 ~-~--------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~ 400 (1045)
T 1k32_A 331 K-V--------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF 400 (1045)
T ss_dssp E-C--------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred E-c--------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCC
Confidence 3 2 25666 89999999 999999999888899 99998887655543447899999999999999999999
Q ss_pred eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC----------cEEEEEcCccceEEEEee-CCceEEEEE
Q 004270 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG----------SLRIWDVILARQIDAIHV-DVSITALSL 606 (764)
Q Consensus 538 ~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~-~~~v~~l~~ 606 (764)
.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++||+.+++ +..+.. ...+.+++|
T Consensus 401 ~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~ 479 (1045)
T 1k32_A 401 EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAF 479 (1045)
T ss_dssp EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEE
T ss_pred eEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceE
Confidence 999999999998888888999999999999999999887654 89999999887 444443 345889999
Q ss_pred cCCCCeEEEEEeCCCeEEEEec
Q 004270 607 SPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 607 sp~g~~lat~~~d~~~i~lW~~ 628 (764)
+|||++|++++.++ ...+|+.
T Consensus 480 spdG~~l~~~s~~~-~~~~~~~ 500 (1045)
T 1k32_A 480 DADSKNLYYLSYRS-LDPSPDR 500 (1045)
T ss_dssp CTTSCEEEEEESCC-CCCEECS
T ss_pred cCCCCEEEEEeccc-CCcCcch
Confidence 99999999998876 4777764
No 94
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.3e-34 Score=293.79 Aligned_cols=315 Identities=15% Similarity=0.220 Sum_probs=233.2
Q ss_pred EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeeEEEEec--CCCEEEEEcCCCcE
Q 004270 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSI 292 (764)
Q Consensus 219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~i 292 (764)
+..+|.+.|++++|+|+++ +|++|+.||.|++||+.++ +....+. +|...|.+++|+| ++.+|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4455689999999999999 9999999999999999876 4556666 8999999999999 68999999999999
Q ss_pred EEEEecCCCCCc-----eeeEeccCCCCCCeeEEEecC--CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270 293 KMWIFDTTDGDP-----RLLRFRSGHSAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (764)
Q Consensus 293 ~vw~~~~~~~~~-----~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 365 (764)
++|+++...... ..+..+.+|...|.+++|+|+ ++++++++.|+.|++||+.+......+.....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------- 155 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE-------- 155 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE--------
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc--------
Confidence 999998764322 556777899999999999998 99999999999999999987765444321000
Q ss_pred chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC---CCEEEEE
Q 004270 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLG 442 (764)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g 442 (764)
..........+...+.+++++|+ +++++++
T Consensus 156 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 188 (351)
T 3f3f_A 156 -----------------------------------------------MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188 (351)
T ss_dssp -----------------------------------------------EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred -----------------------------------------------ccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence 00001112245678999999997 9999999
Q ss_pred ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC----CEEEEEeCCCeEEEEECCCCCeeeeEecC-cc
Q 004270 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN----TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS 517 (764)
Q Consensus 443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~ 517 (764)
+.++.+.+|+...+....... ..+|...|++++|+|++ ++|++++.||.|++||+.++......... ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~------~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 262 (351)
T 3f3f_A 189 ALEQAIIYQRGKDGKLHVAAK------LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTN 262 (351)
T ss_dssp ETTEEEEEEECTTSCEEEEEE------CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------
T ss_pred cCCCcEEEEccCCCceeeeee------cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccc
Confidence 999999888887776522221 24899999999999998 89999999999999999876544333222 33
Q ss_pred eEEEEEeecCCEEEEE----eCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270 518 LVKIVYHRVNGLLATV----ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593 (764)
Q Consensus 518 i~~~~~s~~~~~la~~----~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~ 593 (764)
......++....++.+ .....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp ----------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 3333444444444433 334566777777788899999999999999999999999999999999999999987666
Q ss_pred EEe
Q 004270 594 AIH 596 (764)
Q Consensus 594 ~~~ 596 (764)
.+.
T Consensus 343 ~~~ 345 (351)
T 3f3f_A 343 CMS 345 (351)
T ss_dssp EEE
T ss_pred hee
Confidence 554
No 95
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-33 Score=283.76 Aligned_cols=254 Identities=14% Similarity=0.234 Sum_probs=211.8
Q ss_pred EEecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEE
Q 004270 87 ATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ 164 (764)
Q Consensus 87 ~~~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~ 164 (764)
..+.+|...|.+++| +|++|++++.|++|+|||+.+... ..+.++..|...+..++|+|+...+.|++|+.||+|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 357899999999997 699999999999999999975422 1267788888888899998642117899999999999
Q ss_pred EEeCCCCe--EEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEccCCce--EEEEeccCCCCEEEEEEeeC---
Q 004270 165 LWNISTKK--KLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSD--- 235 (764)
Q Consensus 165 iwd~~~~~--~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~l~fs~d--- 235 (764)
+||+++++ .+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++++.. ...+. .|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIE 159 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC--
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCccc
Confidence 99998874 66788899999999999998 89999999999999999987642 33443 45789999999997
Q ss_pred ----------CCCEEEEEeCCCcEEEEECCCce----eeeeeecccccCeeEEEEecCC---CEEEEEcCCCcEEEEEec
Q 004270 236 ----------GQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFD 298 (764)
Q Consensus 236 ----------~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~d~~i~vw~~~ 298 (764)
++ +|++|+.|+.|++||+++++ ....+. +|...|.+++|+|++ .+|++++.|++|++|+++
T Consensus 160 ~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ----------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 34 89999999999999998765 555666 899999999999985 799999999999999987
Q ss_pred CCCCCcee-eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 299 TTDGDPRL-LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 299 ~~~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
........ .....+|...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 65332211 111257888999999999999999999999999999763
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.1e-33 Score=282.74 Aligned_cols=282 Identities=17% Similarity=0.233 Sum_probs=235.8
Q ss_pred cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (764)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~ 218 (764)
..+.|++++ .|++| .|++|+|||+.++++++.+. +|...|++++|+|++++|++|+.||.|++||+++++.+..
T Consensus 29 ~~l~WS~~~---~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 29 NLVDWSSGN---VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp BCEEECTTS---EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eEEEECCCC---EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 456788775 56665 58999999999999888775 6788899999999999999999999999999999999998
Q ss_pred EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
+..+ ...+.++++ ++. ++++|+.++.+++|+............+|...+..+.+.+++++|++++.|+.|++||+.
T Consensus 105 ~~~h-~~~~~~~~~--~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 105 MTSH-SARVGSLSW--NSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EECC-SSCEEEEEE--ETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred ecCc-cceEEEeec--CCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 8765 677776555 455 899999999999999987754433333899999999999999999999999999999998
Q ss_pred CCCCCceeeEeccCCCCCCeeEEEecCCCEE---EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHI---LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375 (764)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l---~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (764)
..............|...|.++.++|++..+ ++++.++.+++|+..........
T Consensus 181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----------------------- 237 (318)
T 4ggc_A 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----------------------- 237 (318)
T ss_dssp CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-----------------------
T ss_pred CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-----------------------
Confidence 7765555666777889999999999965433 35567899999997654322211
Q ss_pred eeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEEC
Q 004270 376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNL 453 (764)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~ 453 (764)
.+...+..+.++++++.+++++ .||.|++||+
T Consensus 238 ----------------------------------------------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 238 ----------------------------------------------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp ----------------------------------------------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred ----------------------------------------------cceeeeeeeeecccccceEEEEEcCCCEEEEEEC
Confidence 1236788999999999988765 7899999999
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 507 (764)
.+++.+..+. +|.+.|++++|+|++++|+|++.||+|++||+.+..
T Consensus 272 ~~~~~~~~l~--------gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 272 PTMAKVAELK--------GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTCCEEEEEC--------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCcEEEEEc--------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999988875 899999999999999999999999999999987643
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=295.05 Aligned_cols=298 Identities=15% Similarity=0.208 Sum_probs=235.1
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEcCC---CCEEEEEEcCCeEEEEEccC-CceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSSPA---LDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~---~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (764)
..|+....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+......|.+.|.+++|+|+++ +
T Consensus 22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~ 100 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-K 100 (368)
T ss_dssp -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS-E
T ss_pred ccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC-E
Confidence 34566677888889999999999999999 69999999999999999998 5555343444589999999999999 9
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEE--ecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270 240 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF--FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
|++++.||.|++||+++++..... .|...|.+++| +|++.+|++++.|+.|++||+... ..+..+..|. .+
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~-~~ 173 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS----NPMMVLQLPE-RC 173 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS----SCSEEEECSS-CE
T ss_pred EEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC----cEEEEEecCC-Cc
Confidence 999999999999999999877744 59999999999 889999999999999999988765 3344444443 44
Q ss_pred eeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeee
Q 004270 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (764)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (764)
.++.+. +..+++++.++.+.+|++........
T Consensus 174 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------------------------------- 205 (368)
T 3mmy_A 174 YCADVI--YPMAVVATAERGLIVYQLENQPSEFR---------------------------------------------- 205 (368)
T ss_dssp EEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEE----------------------------------------------
T ss_pred eEEEec--CCeeEEEeCCCcEEEEEeccccchhh----------------------------------------------
Confidence 555544 44777788888888888753221100
Q ss_pred CCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (764)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (764)
.. ...+...+
T Consensus 206 ----------------------------------------------------------------~~------~~~~~~~~ 215 (368)
T 3mmy_A 206 ----------------------------------------------------------------RI------ESPLKHQH 215 (368)
T ss_dssp ----------------------------------------------------------------EC------CCSCSSCE
T ss_pred ----------------------------------------------------------------hc------cccccCCC
Confidence 00 01222333
Q ss_pred EEEEECCCCCE----EEEEeCCCeEEEEECCCC---CeeeeEecCc-------------ceEEEEEeecCCEEEEEeCCC
Q 004270 478 VGVACDSTNTL----MISAGYHGDIKVWDFKGR---DLKSRWEVGC-------------SLVKIVYHRVNGLLATVADDL 537 (764)
Q Consensus 478 ~~l~~~~~~~~----l~s~~~dg~v~iwd~~~~---~~~~~~~~~~-------------~i~~~~~s~~~~~la~~~~d~ 537 (764)
.++++.++... +++++.||.|++|++... .....+..+. .|.+++|+|++++|++++.||
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG 295 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence 44444333333 899999999999999887 4455665553 699999999999999999999
Q ss_pred eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 538 ~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
.|++||+.+++++..+.+|...|++++|+|||++|++++.|+..+.|++.
T Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 296 RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 99999999999999999999999999999999999999998866655544
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=301.29 Aligned_cols=290 Identities=17% Similarity=0.304 Sum_probs=232.5
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-----------eeeeeecccc------------cCeeEEEEecCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----------LQSVIREAHD------------NAIISLHFFANE 280 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-----------~~~~~~~~h~------------~~v~~l~~~~~~ 280 (764)
.+.|++++|+|+|+ +|++|+.||.|++||+.+++ ....+. +|. ..|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 28 ADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCCC
Confidence 57999999999999 99999999999999998876 466776 898 889999999998
Q ss_pred --CEEEEEcCCCcEEEEEecCCCCCc-----------------------------------eee-EeccCCCCCCeeEEE
Q 004270 281 --PVLMSASADNSIKMWIFDTTDGDP-----------------------------------RLL-RFRSGHSAPPLCIRF 322 (764)
Q Consensus 281 --~~l~s~~~d~~i~vw~~~~~~~~~-----------------------------------~~~-~~~~~h~~~v~~i~~ 322 (764)
..|++++.|++|++|++....... ... ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999987532100 001 224689999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (764)
Q Consensus 323 ~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
+|++++|+++ .|+.|++||+........
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~--------------------------------------------------- 213 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFN--------------------------------------------------- 213 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEE---------------------------------------------------
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceee---------------------------------------------------
Confidence 9999999998 799999999874321111
Q ss_pred EEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcCCcc----cceecCccccccccccC--
Q 004270 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGIS----RGSYLDMSERSNYAHNG-- 475 (764)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~~~~----~~~~~~~~~~~~~~h~~-- 475 (764)
+.+... .....|...+.+++|+|++ +++++|+.||.|++||+.++.. ...+. .|..
T Consensus 214 -~~~~~~--------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~ 276 (447)
T 3dw8_B 214 -IVDIKP--------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE--------EPEDPS 276 (447)
T ss_dssp -EEECCC--------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC--------CC----
T ss_pred -eeeccc--------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec--------cCCCcc
Confidence 000000 0122456889999999999 9999999999999999998876 44443 4544
Q ss_pred ----------cEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCeeeeEecCcc----------------eEEEEEeecCC
Q 004270 476 ----------EVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCS----------------LVKIVYHRVNG 528 (764)
Q Consensus 476 ----------~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~----------------i~~~~~s~~~~ 528 (764)
.|.+++|+|++++|++++. +.|++||+.+ ++++..+..+.. +..++|+|+++
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~ 355 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS 355 (447)
T ss_dssp -CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS
T ss_pred ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCC
Confidence 9999999999999999999 9999999997 888888877654 33499999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEeec---------------------------------CCCCeeEEEEcCCCcEEEEE
Q 004270 529 LLATVADDLVIRLFDVVALRMVRKFEG---------------------------------HTDRITDFCFSEDGKWLLSS 575 (764)
Q Consensus 529 ~la~~~~d~~i~v~d~~~~~~~~~~~~---------------------------------h~~~i~~l~~s~dg~~l~s~ 575 (764)
+|++|+.||.|++||+.+++.+ .+.+ +...|..++|+|++++||++
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~ 434 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA 434 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred EEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE
Confidence 9999999999999999998876 3332 23568899999999999999
Q ss_pred eCCCcEEEEEcC
Q 004270 576 GMDGSLRIWDVI 587 (764)
Q Consensus 576 s~dg~i~iwd~~ 587 (764)
+.++ +++|.-+
T Consensus 435 ~~~~-~~~~~~~ 445 (447)
T 3dw8_B 435 TTNN-LYIFQDK 445 (447)
T ss_dssp CSSC-EEEEECC
T ss_pred ecce-eeeeccc
Confidence 8776 8888643
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.8e-33 Score=287.22 Aligned_cols=280 Identities=10% Similarity=0.134 Sum_probs=239.2
Q ss_pred eccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---eeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEE
Q 004270 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW 295 (764)
Q Consensus 220 ~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw 295 (764)
...|.+.|++++|+|+++ +|++++.||.|++||+.+++ ....+. +|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 7 ~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp SSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 345688999999999998 89999999999999998876 234444 7999999999999999 99999999999999
Q ss_pred Ee-cCCCCCceeeEeccC--CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec---------ccccccccchhhhHHHhh
Q 004270 296 IF-DTTDGDPRLLRFRSG--HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ---------DQQSRELSQRHVAKRARK 363 (764)
Q Consensus 296 ~~-~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~~ 363 (764)
++ ... ....+.+ |...|.+++|+| ++.+++++.|+.|++||+.+ .+....+
T Consensus 85 d~~~~~-----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------- 147 (342)
T 1yfq_A 85 DLIGSP-----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----------- 147 (342)
T ss_dssp CSSSSS-----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-----------
T ss_pred EeccCC-----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-----------
Confidence 88 654 2355667 999999999999 99999999999999999865 2111110
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
.+...+.++++++++ +++++
T Consensus 148 ----------------------------------------------------------~~~~~v~~~~~~~~~--l~~~~ 167 (342)
T 1yfq_A 148 ----------------------------------------------------------KVKNKIFTMDTNSSR--LIVGM 167 (342)
T ss_dssp ----------------------------------------------------------SSCCCEEEEEECSSE--EEEEE
T ss_pred ----------------------------------------------------------eeCCceEEEEecCCc--EEEEe
Confidence 145789999999888 99999
Q ss_pred cCCcEEEEECcC-CcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------CeeeeEecC
Q 004270 444 AGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG 515 (764)
Q Consensus 444 ~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~ 515 (764)
.+|.|++||+.+ +....... ...|...+.+++|+| +++++++++.||.|++|+++.. +....+..+
T Consensus 168 ~d~~i~i~d~~~~~~~~~~~~------~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 168 NNSQVQWFRLPLCEDDNGTIE------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp STTEEEEEESSCCTTCCCEEE------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred CCCeEEEEECCccccccceee------ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 999999999988 54322111 137888999999999 9999999999999999999877 777777655
Q ss_pred -c---------ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCeeEEEEcCCCcEEEEEeCCCc-EEE
Q 004270 516 -C---------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGMDGS-LRI 583 (764)
Q Consensus 516 -~---------~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~s~dg~~l~s~s~dg~-i~i 583 (764)
. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|++++ |++++|++++.||+ .+.
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence 2 8999999999999999999999999999999999999998 99999999 99999999999998 555
Q ss_pred EEc
Q 004270 584 WDV 586 (764)
Q Consensus 584 wd~ 586 (764)
|..
T Consensus 320 ~~~ 322 (342)
T 1yfq_A 320 AAI 322 (342)
T ss_dssp SSS
T ss_pred ccc
Confidence 553
No 100
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.5e-33 Score=281.15 Aligned_cols=247 Identities=15% Similarity=0.199 Sum_probs=203.9
Q ss_pred EeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270 308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (764)
..+.+|...|.+++|+|+|++|++++.|++|++|++......
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-------------------------------------- 44 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-------------------------------------- 44 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC--------------------------------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE--------------------------------------
Confidence 345789999999999999999999999999999998532110
Q ss_pred cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEECcCCcc--cceec
Q 004270 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGIS--RGSYL 463 (764)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~g~~~g~i~i~~~~~~~~--~~~~~ 463 (764)
.+....+|...|.+++|+++ |++|++|+.||.|++||+.++.. ...+
T Consensus 45 ----------------------------~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~- 95 (297)
T 2pm7_B 45 ----------------------------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH- 95 (297)
T ss_dssp ----------------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-
T ss_pred ----------------------------EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-
Confidence 00111257789999999864 89999999999999999988742 2233
Q ss_pred CccccccccccCcEEEEEECCC--CCEEEEEeCCCeEEEEECCCCCe--eeeEe-cCcceEEEEEeec------------
Q 004270 464 DMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGRDL--KSRWE-VGCSLVKIVYHRV------------ 526 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~--~~~~~-~~~~i~~~~~s~~------------ 526 (764)
..|...|.+++|+|+ +.+|++++.|+.|++||+.++.. ...+. +...+.+++|+|+
T Consensus 96 -------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 168 (297)
T 2pm7_B 96 -------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (297)
T ss_dssp -------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----------
T ss_pred -------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCC
Confidence 379999999999997 88999999999999999987632 23333 4478999999997
Q ss_pred -CCEEEEEeCCCeEEEEEccCCe----EEEEeecCCCCeeEEEEcCCC---cEEEEEeCCCcEEEEEcCccc--eE-EEE
Q 004270 527 -NGLLATVADDLVIRLFDVVALR----MVRKFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVILAR--QI-DAI 595 (764)
Q Consensus 527 -~~~la~~~~d~~i~v~d~~~~~----~~~~~~~h~~~i~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~~--~~-~~~ 595 (764)
+++|++|+.|+.|++||+.+++ ....+.+|...|.+++|+|++ ++|++++.|++|++||+.++. .. ..+
T Consensus 169 ~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~ 248 (297)
T 2pm7_B 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL 248 (297)
T ss_dssp -CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeee
Confidence 5799999999999999998765 677899999999999999995 899999999999999998753 12 222
Q ss_pred ---eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 596 ---HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 596 ---~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.+...|.+++|+|+|++||+++.|+ .|++|+..
T Consensus 249 ~~~~~~~~v~~~~~s~~g~~las~~~D~-~v~lw~~~ 284 (297)
T 2pm7_B 249 KEEKFPDVLWRASWSLSGNVLALSGGDN-KVTLWKEN 284 (297)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEETTS-CEEEEEEC
T ss_pred ecccCCCcEEEEEECCCCCEEEEEcCCC-cEEEEEEC
Confidence 2244599999999999999999999 59999975
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.2e-33 Score=298.35 Aligned_cols=236 Identities=21% Similarity=0.359 Sum_probs=208.5
Q ss_pred ecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC
Q 004270 89 WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI 168 (764)
Q Consensus 89 ~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~ 168 (764)
..+|...|.++.+++++|++++.||.|++||+.+++. ...+..|...+..+.+ ++ +.+++|+.||.|++||+
T Consensus 129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~--~~--~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC----KRILTGHTGSVLCLQY--DE--RVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE----EEEECCCSSCEEEEEC--CS--SEEEEEETTSCEEEEES
T ss_pred ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE----EEEEcCCCCcEEEEEE--CC--CEEEEEcCCCeEEEEEC
Confidence 4567888999999999999999999999999998887 6677777776666555 56 78999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE--EEeccCCCCEEEEEEeeCCCCEEEEEeCC
Q 004270 169 STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSSDGQPLLASGASS 246 (764)
Q Consensus 169 ~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~d~~~~l~sg~~d 246 (764)
.+++.+..+.+|...|.+++|++ +++++|+.||.|++||+.+++... .....|...|.+++| +++ ++++|+.|
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~d 275 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGD 275 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETT
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCC
Confidence 99999999999999999999975 589999999999999999887652 333445889999999 566 89999999
Q ss_pred CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC
Q 004270 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (764)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (764)
|.|++||+++++.+..+. +|...|.++.|. +.++++++.||.|++||+... ..+..+.+|...|.+++| ++
T Consensus 276 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp SEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEC--CS
T ss_pred CeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEe--cC
Confidence 999999999999999998 899999999994 679999999999999998765 567778899999999999 78
Q ss_pred CEEEEEeCCCcEEEEEeecc
Q 004270 327 RHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 327 ~~l~s~~~dg~i~i~d~~~~ 346 (764)
.+|++++.||.|++||+...
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHH
T ss_pred CEEEEEeCCCcEEEEECCCC
Confidence 89999999999999998654
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=298.78 Aligned_cols=336 Identities=18% Similarity=0.175 Sum_probs=239.5
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc--CCceEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCC
Q 004270 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSD--GQPLLASGASS 246 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~d 246 (764)
|+++..+.+|...|++++|+|++++||+|+.||.|++||+. +++.+..+..+ ...|++++|+++ +. +|++|+.|
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~-~l~s~~~d 78 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGT-ILASCSYD 78 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCS-EEEEEETT
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCCC-EEEEeccC
Confidence 45677889999999999999999999999999999999998 45566666554 889999999977 77 99999999
Q ss_pred CcEEEEECCCce--eeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270 247 GVISIWNLEKRR--LQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 247 g~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (764)
|.|++||+.+++ ....+. .|...|.+++|+|+ +.+|++++.|+.|++|++..... .....+.+|...|.+++|
T Consensus 79 g~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASW 155 (379)
T ss_dssp SCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--CCEEEEECCTTCEEEEEE
T ss_pred CEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--eeeEEecCCCCceEEEEE
Confidence 999999999987 555665 79999999999999 89999999999999999876643 233455689999999999
Q ss_pred ec-------------CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270 323 YA-------------NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (764)
Q Consensus 323 ~~-------------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (764)
+| ++.++++++.|+.|++||+........
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------------------- 197 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV-------------------------------------- 197 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE--------------------------------------
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee--------------------------------------
Confidence 99 577777777777777777654321100
Q ss_pred cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
....+
T Consensus 198 --------------------------------------------------------------------~~~~~------- 202 (379)
T 3jrp_A 198 --------------------------------------------------------------------LESTL------- 202 (379)
T ss_dssp --------------------------------------------------------------------EEEEE-------
T ss_pred --------------------------------------------------------------------eEEEE-------
Confidence 00111
Q ss_pred cccccCcEEEEEECCC---CCEEEEEeCCCeEEEEECCCCCee---eeE---ecCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270 470 NYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDLK---SRW---EVGCSLVKIVYHRVNGLLATVADDLVIR 540 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~---~~~---~~~~~i~~~~~s~~~~~la~~~~d~~i~ 540 (764)
.+|...|.+++|+|+ +++|++++.||.|++||+.++... ... .+...+.+++|+|++++|++++.||.|+
T Consensus 203 -~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 203 -EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp -CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred -ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence 378899999999999 899999999999999999886421 222 2457899999999999999999999999
Q ss_pred EEEccCCeEEEEee---c-----CCCCeeEEEEcCC--Cc-EEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCC
Q 004270 541 LFDVVALRMVRKFE---G-----HTDRITDFCFSED--GK-WLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN 609 (764)
Q Consensus 541 v~d~~~~~~~~~~~---~-----h~~~i~~l~~s~d--g~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~ 609 (764)
+|++........+. . +...+....|... .. .++....+..+.++.. .....+...+.....|++|
T Consensus 282 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~fs~~ 357 (379)
T 3jrp_A 282 LWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKL----IMKERRFTASYTFAKFSTG 357 (379)
T ss_dssp EEEEEETTEEEEEEEEC----------------CEEEC--------------CTHHH----HHHHTTCCTTCCCEEEETT
T ss_pred EEeCCCCCccccccceeccccCCCCCCchheeecccccchhhhhcccccccchhHHh----hhhhccccCcceeeEECCC
Confidence 99998553332221 1 1122333344321 01 1111111111111110 0011112345667899999
Q ss_pred CCeEEEEEeCCCeEEEEecc
Q 004270 610 MDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 610 g~~lat~~~d~~~i~lW~~~ 629 (764)
|.+|+....+..+|+.+.+.
T Consensus 358 g~~l~~~~~~~~~~~~~~~~ 377 (379)
T 3jrp_A 358 SMLLTKDIVGKSGVSIKRLP 377 (379)
T ss_dssp TEEEEECTTSSSSEEEEECC
T ss_pred CeEeeecccccccEEEEecc
Confidence 99998887776668888765
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5e-33 Score=287.10 Aligned_cols=272 Identities=14% Similarity=0.165 Sum_probs=234.8
Q ss_pred cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEe
Q 004270 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV 343 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~ 343 (764)
.+|.+.|.+++|+|++++|++++.|+.|++|+++..... .......+|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc-ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 379999999999999999999999999999999876422 22344458999999999999999 9999999999999998
Q ss_pred -ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 344 -IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
..+.. .. ...
T Consensus 87 ~~~~~~-~~--------------------------------------------------------------------~~~ 97 (342)
T 1yfq_A 87 IGSPSF-QA--------------------------------------------------------------------LTN 97 (342)
T ss_dssp SSSSSE-EE--------------------------------------------------------------------CBS
T ss_pred ccCCce-Ee--------------------------------------------------------------------ccc
Confidence 65422 10 013
Q ss_pred --CCCCeEEEEEccCCCEEEEEecCCcEEEEECcC---------CcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 423 --NPTAVKACTISACGNFAVLGTAGGWIERFNLQS---------GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 423 --~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~---------~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
|...|.+++|+| ++++++++.||.|++||+.+ +.....+ .|...|.+++|+|++ +++
T Consensus 98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~--l~~ 165 (342)
T 1yfq_A 98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------KVKNKIFTMDTNSSR--LIV 165 (342)
T ss_dssp CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---------SSCCCEEEEEECSSE--EEE
T ss_pred cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---------eeCCceEEEEecCCc--EEE
Confidence 568899999999 99999999999999999987 5554443 488999999999887 999
Q ss_pred EeCCCeEEEEECCC-CCee---eeEecCcceEEEEEee-cCCEEEEEeCCCeEEEEEccCC------eEEEEeecCCC--
Q 004270 492 AGYHGDIKVWDFKG-RDLK---SRWEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVAL------RMVRKFEGHTD-- 558 (764)
Q Consensus 492 ~~~dg~v~iwd~~~-~~~~---~~~~~~~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~------~~~~~~~~h~~-- 558 (764)
++.|+.|++||+.+ +... ....+...+.+++|+| +++++++++.||.|++|+++.. +....+.+|..
T Consensus 166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence 99999999999998 5432 2223457899999999 9999999999999999999887 77888888865
Q ss_pred -------CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC--CceEEEEEcCCCCeEEEEEeCC
Q 004270 559 -------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 559 -------~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d~ 620 (764)
.|++++|+|++++|++++.||.|++||+.+++++..+..+ .+|++++ |+|++|++++.|+
T Consensus 246 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 9999999999999999999999999999999999998875 4599999 9999999999998
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=9.4e-32 Score=283.14 Aligned_cols=331 Identities=11% Similarity=0.124 Sum_probs=259.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
.+++++.++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+ ..+.+++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~v~~~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGVA 80 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--CCccceE
Confidence 57788899999999999999999998875 58999999999987 56668999999999999999888775 3899999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceeeEec
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFR 310 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~ 310 (764)
|+|+++.++++++.++.|++||+.+++.+..+. +...+.+++|+|+++.+ ++++.|+.|++||+... +....+
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~ 154 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTV 154 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEE
Confidence 999999444666678999999999999888876 45578999999999977 78888999999988655 444444
Q ss_pred cCCCCCCeeEEEecCCCEE-EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270 311 SGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (764)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l-~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (764)
..| ..+.+++|+|+++++ ++++.++.|++||+.++
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------------------------------- 190 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------------------------------- 190 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-------------------------------------------
T ss_pred ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-------------------------------------------
Confidence 444 345778888887766 45566777777775432
Q ss_pred cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
.....+
T Consensus 191 -------------------------------------------------------------------~~~~~~------- 196 (391)
T 1l0q_A 191 -------------------------------------------------------------------SVIDTV------- 196 (391)
T ss_dssp -------------------------------------------------------------------EEEEEE-------
T ss_pred -------------------------------------------------------------------eEEEEE-------
Confidence 111111
Q ss_pred cccccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEE-EEEeCCCeEEEEEcc
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDLVIRLFDVV 545 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l-a~~~~d~~i~v~d~~ 545 (764)
.+...+.+++|+|+++++++++ .++.|++||+.+++.+..+..+..+.+++|+|+++++ ++++.|+.|++||+.
T Consensus 197 --~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 197 --KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp --ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred --ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 3445678899999999888887 6899999999999999998888889999999999987 566789999999999
Q ss_pred CCeEEEEeecCCCCee---EEEEcC------------CC----------cEEEEEeCCCcEEEEEcCccceEEEEeeCCc
Q 004270 546 ALRMVRKFEGHTDRIT---DFCFSE------------DG----------KWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600 (764)
Q Consensus 546 ~~~~~~~~~~h~~~i~---~l~~s~------------dg----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 600 (764)
+++.+..+..|..+.. .+.+.| +. ..+...+.|..+++||+.+|... ...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~---~~~-- 349 (391)
T 1l0q_A 275 TNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS---KKQ-- 349 (391)
T ss_dssp TTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE---CSS--
T ss_pred CCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc---CcC--
Confidence 9999999887765432 123332 21 23555667889999999888642 111
Q ss_pred eEEEEEcCCCCeEEEEE
Q 004270 601 ITALSLSPNMDVLATAH 617 (764)
Q Consensus 601 v~~l~~sp~g~~lat~~ 617 (764)
-....|+++|.|.++..
T Consensus 350 ~~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 350 NPTHTYSETGIYTVRLT 366 (391)
T ss_dssp SCEECCSSCEEEEEEEE
T ss_pred CCeEEeCCCceEEEEEE
Confidence 23468999999987654
No 105
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-33 Score=287.36 Aligned_cols=252 Identities=15% Similarity=0.234 Sum_probs=205.6
Q ss_pred ecccccceEEEEE--eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 89 ~~~h~~~v~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
+.+|.+.|.+++| +|++|++++.|++|++||+.++... .+..+..|...+..++|+|+...+.|++|+.|++|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI--LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE--EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE--EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 6799999999997 6999999999999999999876421 25667788888889999764111789999999999999
Q ss_pred eCCCC--eEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEccCCceE--EEEeccCCCCEEEEEEeeCC----
Q 004270 167 NISTK--KKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEEL--VTFTHSMRGAVTALAFSSDG---- 236 (764)
Q Consensus 167 d~~~~--~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~l~fs~d~---- 236 (764)
|++++ +.+..+.+|...|.+++|+|+ +.+|++|+.||.|++||+..+... ......|...|.+++|+|++
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99887 467888999999999999998 789999999999999999876432 22234457889999999973
Q ss_pred -------------CCEEEEEeCCCcEEEEECCCc---eeeeeeecccccCeeEEEEecCC----CEEEEEcCCCcEEEEE
Q 004270 237 -------------QPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANE----PVLMSASADNSIKMWI 296 (764)
Q Consensus 237 -------------~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~d~~i~vw~ 296 (764)
. +|++|+.|+.|++||++.. +....+. +|...|.+++|+|++ .+|++++.|++|++|+
T Consensus 167 ~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 167 LIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ----CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 4 8999999999999999755 4556666 899999999999986 7899999999999999
Q ss_pred ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee
Q 004270 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~ 344 (764)
++...........+.+|...|.+++|+|++++|++++.|++|++|+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 876321111122335788999999999999999999999999999975
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=283.50 Aligned_cols=286 Identities=14% Similarity=0.156 Sum_probs=238.5
Q ss_pred EECCCceeeeeeecccccCeeEEEEecC---CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
|+....+.+..+. +|.+.|++++|+|+ +++|++++.||.|++|+++... ......+.+|...|.+++|+|++++
T Consensus 24 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 24 DNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDGSK 100 (368)
T ss_dssp CSSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTTSSE
T ss_pred CCCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcCCCE
Confidence 3445556666666 89999999999999 5899999999999999997632 1344667789999999999999999
Q ss_pred EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (764)
|++++.||.|++||+.+......
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~~--------------------------------------------------------- 123 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQI--------------------------------------------------------- 123 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEEE---------------------------------------------------------
T ss_pred EEEEcCCCcEEEEEcCCCCceee---------------------------------------------------------
Confidence 99999999999999875542211
Q ss_pred ceeecceeecCCCCCCCCeEEEEE--ccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC
Q 004270 409 NFVLGEHILRPCPENPTAVKACTI--SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (764)
..|...+.+++| +++++++++++.||.|++||+.++.....+. .| ..+.++.+.+
T Consensus 124 ------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~-~~~~~~~~~~-- 180 (368)
T 3mmy_A 124 ------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--------LP-ERCYCADVIY-- 180 (368)
T ss_dssp ------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--------CS-SCEEEEEEET--
T ss_pred ------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--------cC-CCceEEEecC--
Confidence 024588999999 9999999999999999999999998877764 33 4566666664
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEe---cCcceEEEEEeecCCE----EEEEeCCCeEEEEEccCC---eEEEEeecC
Q 004270 487 TLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGL----LATVADDLVIRLFDVVAL---RMVRKFEGH 556 (764)
Q Consensus 487 ~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~----la~~~~d~~i~v~d~~~~---~~~~~~~~h 556 (764)
..+++++.++.+++|++.......... ......++++.++... +++++.|+.|++||+... +.+..+.+|
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 488899999999999998765443332 2256777777776665 999999999999999987 567788888
Q ss_pred CC------------CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCC
Q 004270 557 TD------------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 557 ~~------------~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~ 620 (764)
.. .|++++|+|++++|++++.||.|++||+.+++++..+..|. +|++++|+|+|++||+++.|+
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 76 79999999999999999999999999999999999988755 599999999999999999987
No 107
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2e-32 Score=278.16 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=202.4
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCce--EEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcEEE
Q 004270 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVISI 251 (764)
Q Consensus 176 ~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i~i 251 (764)
.+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++. +..+.. |.+.|.+++|+++ +. +|++|+.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~-~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGN-ILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSS-CEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCC-EEEEEECCCEEEE
Confidence 3568999999999999999999999999999999998753 455655 4899999999863 66 8999999999999
Q ss_pred EECCCce--eeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC--
Q 004270 252 WNLEKRR--LQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-- 325 (764)
Q Consensus 252 wd~~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-- 325 (764)
||+++++ ....+. +|...|.+++|+|+ +.+|++++.|++|++|++.... .......+.+|...+.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 86 WREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp ECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcceEEEccccC
Confidence 9998874 445555 89999999999998 7899999999999999987542 12234556789999999999997
Q ss_pred ---------------CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 326 ---------------GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 326 ---------------~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
+++|++++.|++|++||+......
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----------------------------------------- 202 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----------------------------------------- 202 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-----------------------------------------
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-----------------------------------------
Confidence 468999999999999997532110
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC----CEEEEEecCCcEEEEECcCCcc---c-cee
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG----NFAVLGTAGGWIERFNLQSGIS---R-GSY 462 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~g~~~g~i~i~~~~~~~~---~-~~~ 462 (764)
.......+|...|.+++|+|++ ++|++|+.||.|++|++.+... . ..+
T Consensus 203 ------------------------~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 203 ------------------------KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp ------------------------EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred ------------------------ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence 0111223567899999999987 8999999999999999986321 1 122
Q ss_pred cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 259 --------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 259 --------HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp --------EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred --------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3688999999999999999999999999999976
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=285.79 Aligned_cols=262 Identities=15% Similarity=0.217 Sum_probs=223.2
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeE
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKI 205 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i 205 (764)
+..+..|...+..++|+|++ ++|++|+.||.|++||+. +++.+..+.+|...|.+++|+|+ +++|++|+.||.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYG--KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp -CCEEECCCCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEecCCcccEEEEEEcCCC--CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 55677889999999999999 899999999999999998 66788899999999999999987 8999999999999
Q ss_pred EEEEccCCc--eEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcEEEEECCCcee--eeeeecccccCeeEEEEec-
Q 004270 206 HVHNVRYDE--ELVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVISIWNLEKRRL--QSVIREAHDNAIISLHFFA- 278 (764)
Q Consensus 206 ~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~l~~~~- 278 (764)
++||+.+++ .+..+.. |...|.+++|+|+ +. +|++++.||.|++||+.++.. ...+. +|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCC
T ss_pred EEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCc
Confidence 999999987 5555544 4789999999999 77 999999999999999988733 33344 7999999999999
Q ss_pred ------------CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC---CCEEEEEeCCCcEEEEEe
Q 004270 279 ------------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 279 ------------~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~dg~i~i~d~ 343 (764)
++.++++++.|+.|++||+............+.+|...|.+++|+|+ +++|++++.||.|++||+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 68999999999999999998776555667778899999999999999 899999999999999998
Q ss_pred ecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCC
Q 004270 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (764)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (764)
........ ........+
T Consensus 239 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~ 255 (379)
T 3jrp_A 239 DNEQGPWK---------------------------------------------------------------KTLLKEEKF 255 (379)
T ss_dssp SSTTSCCE---------------------------------------------------------------EEESSSSCC
T ss_pred CCCCccce---------------------------------------------------------------eeeeccccC
Confidence 76532111 011111235
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 459 (764)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~ 459 (764)
...+.+++|+|+|+++++++.||.|++|++..+...
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 688999999999999999999999999999865443
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.8e-31 Score=280.26 Aligned_cols=298 Identities=13% Similarity=0.097 Sum_probs=245.7
Q ss_pred cEEEEECCCc--eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeE-----eccCCCCCCeeE
Q 004270 248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-----FRSGHSAPPLCI 320 (764)
Q Consensus 248 ~i~iwd~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-----~~~~h~~~v~~i 320 (764)
.|..||..++ +.+..+. ....+.+++|+|++.++++++.++.|++||+.... ... ...+|...+.++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~v~~~ 175 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ----TVRLSPPEKYKKKLGFVETI 175 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC----EEEECCCHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe----EeeecCcccccccCCceeEE
Confidence 4444555445 4555554 34556799999977788888889999999987652 333 445889999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCc
Q 004270 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (764)
Q Consensus 321 ~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (764)
+|+++++.+++++.|+.+++||+.+++....+.
T Consensus 176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~----------------------------------------------- 208 (433)
T 3bws_A 176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVD----------------------------------------------- 208 (433)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-----------------------------------------------
T ss_pred EEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-----------------------------------------------
Confidence 999999999999999999999986554332211
Q ss_pred eEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 479 (764)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 479 (764)
.+...+.+++++|+++++++++ .++.|++||+.++.....+. +...+.+
T Consensus 209 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~~~ 258 (433)
T 3bws_A 209 ---------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD---------KIGLPRG 258 (433)
T ss_dssp ---------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC---------CCSEEEE
T ss_pred ---------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec---------CCCCceE
Confidence 2346789999999999886554 78999999999888766653 3456999
Q ss_pred EEECCCCCEEEEEe--------CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEE-EEEeCCCeEEEEEccCCeEE
Q 004270 480 VACDSTNTLMISAG--------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDLVIRLFDVVALRMV 550 (764)
Q Consensus 480 l~~~~~~~~l~s~~--------~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l-a~~~~d~~i~v~d~~~~~~~ 550 (764)
++|+|+++++++++ .||.|++||+.+++.+..+.+...+.+++|+|+++.+ ++++.++.|++||+.+++.+
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence 99999999999888 4889999999999988888777889999999999755 56688999999999999998
Q ss_pred EEeecCCCCeeEEEEcCCCcEEEEEeC---------------CCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEE
Q 004270 551 RKFEGHTDRITDFCFSEDGKWLLSSGM---------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLAT 615 (764)
Q Consensus 551 ~~~~~h~~~i~~l~~s~dg~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat 615 (764)
..+. +...+.+++|+|+|++|++++. ||.|++||+.+++.+..+..+..+.+++|+|+|++|++
T Consensus 339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEE
T ss_pred EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEE
Confidence 8886 6778999999999999988876 57999999999999999998888999999999999999
Q ss_pred EEe-CCCeEEEEeccc
Q 004270 616 AHV-DQNGVYLWVNRC 630 (764)
Q Consensus 616 ~~~-d~~~i~lW~~~~ 630 (764)
++. |+ .|++|+++.
T Consensus 418 ~~~~d~-~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDH-QIRVYRRDG 432 (433)
T ss_dssp EETTTT-EEEEEEETT
T ss_pred EECCCC-eEEEEEecC
Confidence 886 66 799999863
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-31 Score=277.65 Aligned_cols=299 Identities=15% Similarity=0.147 Sum_probs=226.0
Q ss_pred eEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEEEcC--CCCEEEEEEcCCeE
Q 004270 132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK----KKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKI 205 (764)
Q Consensus 132 ~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~i~~~~~sp--~~~~la~g~~dg~i 205 (764)
.+..|...+..+.|+|++ ++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYG--RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSS--SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCC--CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 345678888999999999 89999999999999999876 57788899999999999999 69999999999999
Q ss_pred EEEEccCC---------ceEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcEEEEECCCceeeeeee----------
Q 004270 206 HVHNVRYD---------EELVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVISIWNLEKRRLQSVIR---------- 264 (764)
Q Consensus 206 ~iwd~~~~---------~~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---------- 264 (764)
++||+.++ +.+..+.. |.+.|.+++|+|+ +. +|++++.||.|++||+++++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEEecCCCcccccccCcceeeeecc-cCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 99999987 44555554 4889999999999 88 99999999999999999886554433
Q ss_pred --cccccCeeEEEEecC---CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCC----CEEEEEeCC
Q 004270 265 --EAHDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG----RHILSAGQD 335 (764)
Q Consensus 265 --~~h~~~v~~l~~~~~---~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~----~~l~s~~~d 335 (764)
..|...+.+++|+|+ +..+++++.|+.+.+|+.... ....+..+.+|...|.+++|+|++ ++|++++.|
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 257889999999997 889999999999977765433 334577788999999999999998 899999999
Q ss_pred CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (764)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 415 (764)
|.|++||+.............
T Consensus 240 g~i~iwd~~~~~~~~~~~~~~----------------------------------------------------------- 260 (351)
T 3f3f_A 240 GRIRIFKITEKLSPLASEESL----------------------------------------------------------- 260 (351)
T ss_dssp SCEEEEEEEECC--------------------------------------------------------------------
T ss_pred CeEEEEeCCCCcCccccCCcc-----------------------------------------------------------
Confidence 999999998654322211100
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEE----EEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 416 ILRPCPENPTAVKACTISACGNFAV----LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~g~~l~----~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
........++....+. .+.....+.+|+.........+. +|...|++++|+|++++|++
T Consensus 261 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 261 ---------TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD--------DHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp ---------------------------------------CCSEEEEEEEEEC--------TTSSCEEEEEECSSSCCEEE
T ss_pred ---------cceeccCCCcccccccccccccccceeeeecccccccEEEEEe--------cccccEEEEEEcCCCCEEEE
Confidence 1111111122222222 22333455566655555555553 89999999999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeeE
Q 004270 492 AGYHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 492 ~~~dg~v~iwd~~~~~~~~~~ 512 (764)
++.||.|++|++.+++....+
T Consensus 324 ~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EETTSCEEEEEECTTSCEEEE
T ss_pred ecCCCcEEEEecCcCcchhhe
Confidence 999999999999988765544
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.6e-31 Score=282.04 Aligned_cols=299 Identities=10% Similarity=0.090 Sum_probs=245.3
Q ss_pred eEEEEEccCC--ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee----cccccCeeEEEEe
Q 004270 204 KIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNAIISLHFF 277 (764)
Q Consensus 204 ~i~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~h~~~v~~l~~~ 277 (764)
.|..+|..++ +.+..+..+ ..+.+++|+|++. ++++++.++.|++||+.+++...... .+|.+.|.+++|+
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG--FQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP 178 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS--SCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG
T ss_pred EEEEECCCCCcceEEEEEcCC--CCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc
Confidence 4444454445 455555443 4567999999666 88888889999999999998776332 2688899999999
Q ss_pred cCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchh
Q 004270 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRH 356 (764)
Q Consensus 278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~ 356 (764)
+++.++++++.|+.|++|+++.. ..+..+..|...+.+++|+|+++.+++++ .|+.|++||+.+++....+.
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--- 251 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTL----AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--- 251 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTC----CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC---
T ss_pred CCCEEEEEECCCCEEEEEECCCc----eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec---
Confidence 99999999999999999998765 45566668899999999999999886555 79999999987554322211
Q ss_pred hhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC
Q 004270 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 436 (764)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 436 (764)
....+.+++++|+|
T Consensus 252 ------------------------------------------------------------------~~~~~~~~~~~~~g 265 (433)
T 3bws_A 252 ------------------------------------------------------------------KIGLPRGLLLSKDG 265 (433)
T ss_dssp ------------------------------------------------------------------CCSEEEEEEECTTS
T ss_pred ------------------------------------------------------------------CCCCceEEEEcCCC
Confidence 12458899999999
Q ss_pred CEEEEEe--------cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCC
Q 004270 437 NFAVLGT--------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 437 ~~l~~g~--------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~ 507 (764)
+++++++ .+|.|++||+.+++....+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEEeec---------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 9999988 4889999999988766554 566789999999999755 666899999999999999
Q ss_pred eeeeEecCcceEEEEEeecCCEEEEEeC---------------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEE
Q 004270 508 LKSRWEVGCSLVKIVYHRVNGLLATVAD---------------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572 (764)
Q Consensus 508 ~~~~~~~~~~i~~~~~s~~~~~la~~~~---------------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l 572 (764)
....+.....+.+++|+|+++++++++. ||.|++||+.+++.+..+.++ ..+.+++|+|||++|
T Consensus 337 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l 415 (433)
T 3bws_A 337 VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYL 415 (433)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEE
T ss_pred EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEE
Confidence 9999988899999999999999988876 579999999999999988864 579999999999999
Q ss_pred EEEeC-CCcEEEEEcCc
Q 004270 573 LSSGM-DGSLRIWDVIL 588 (764)
Q Consensus 573 ~s~s~-dg~i~iwd~~~ 588 (764)
++++. |+.|++|++..
T Consensus 416 ~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 416 VISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEETTTTEEEEEEETT
T ss_pred EEEECCCCeEEEEEecC
Confidence 98875 99999999863
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-32 Score=290.12 Aligned_cols=288 Identities=13% Similarity=0.166 Sum_probs=234.6
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEECCCce----eeeeeecccccCeeEEEEec-CCCEEEEEcCCCcEEEEEecCCC
Q 004270 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTD 301 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~ 301 (764)
...++++|+...++++++.+|.|++|++.... ....+. +|.+.|.+++|+| ++.+|++++.||.|++|++....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 44688888876455668899999999996642 233454 8999999999999 89999999999999999987653
Q ss_pred CCc---eeeEeccCCCCCCeeEEEecCC-CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270 302 GDP---RLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (764)
Q Consensus 302 ~~~---~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (764)
... ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++....+.
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------ 171 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------------------------ 171 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------------------------
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------------------------
Confidence 211 3456677999999999999998 699999999999999987654332221
Q ss_pred EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (764)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~ 457 (764)
...|...+.+++|+|+|+++++++.||.|++||+.++.
T Consensus 172 ------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 172 ------------------------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp ------------------------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred ------------------------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 02456889999999999999999999999999999988
Q ss_pred ccceecCccccccccccCc-EEEEEECCCCCEEEEE---eCCCeEEEEECCCCCe-eee--EecCcceEEEEEeecCCEE
Q 004270 458 SRGSYLDMSERSNYAHNGE-VVGVACDSTNTLMISA---GYHGDIKVWDFKGRDL-KSR--WEVGCSLVKIVYHRVNGLL 530 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~---~~dg~v~iwd~~~~~~-~~~--~~~~~~i~~~~~s~~~~~l 530 (764)
....+. ..|.+. +.+++|+|++++++++ +.|+.|++||+.+++. +.. +.+...+.+++|+|++++|
T Consensus 210 ~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 210 VVAEKD-------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp EEEEEE-------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred eeeeec-------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 877762 267665 8999999999999999 7999999999998764 333 3455889999999999999
Q ss_pred EE-EeCCCeEEEEEccCCeE-EEEeec--CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270 531 AT-VADDLVIRLFDVVALRM-VRKFEG--HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 531 a~-~~~d~~i~v~d~~~~~~-~~~~~~--h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 590 (764)
++ ++.|+.|++||+.+++. +..+.. |...|.+++|+|++.++++ .++.+++|++.+++
T Consensus 283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 283 YLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 75 55799999999998874 444444 5589999999999998874 56799999998754
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.2e-32 Score=287.51 Aligned_cols=284 Identities=14% Similarity=0.225 Sum_probs=231.5
Q ss_pred EEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCC---
Q 004270 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKK----KLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYD--- 213 (764)
Q Consensus 142 ~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~--- 213 (764)
.++++|+.. ..+++++.+|.|++|++.... .+..+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 39 ~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 39 FCAVNPKFM-ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp SEEECSSEE-EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred cEEECCCeE-EEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 466777662 234457889999999986542 3456789999999999999 9999999999999999999988
Q ss_pred ----ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee-cccccCeeEEEEecCCCEEEEEcC
Q 004270 214 ----EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 214 ----~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~ 288 (764)
+.+..+..+ ...|.+++|+|++..+|++++.||.|++||+++++.+..+. .+|...|.+++|+|++++|++++.
T Consensus 118 ~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 118 LPLREPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SCBCSCSEEEECC-SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred cccCCceEEecCC-CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 566777655 88999999999985599999999999999999999988883 389999999999999999999999
Q ss_pred CCcEEEEEecCCCCCceeeEec-cCCCCC-CeeEEEecCCCEEEEE---eCCCcEEEEEeecccccccccchhhhHHHhh
Q 004270 289 DNSIKMWIFDTTDGDPRLLRFR-SGHSAP-PLCIRFYANGRHILSA---GQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (764)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~-~~h~~~-v~~i~~~~~~~~l~s~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (764)
|+.|++||++.. ..+..+ .+|... +.++.|+|++++++++ +.|+.|++||+.+......
T Consensus 197 d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~------------ 260 (402)
T 2aq5_A 197 DKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS------------ 260 (402)
T ss_dssp TSEEEEEETTTT----EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE------------
T ss_pred CCcEEEEeCCCC----ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce------------
Confidence 999999998765 455555 678776 8999999999999988 6889999998754321000
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
T Consensus 261 -------------------------------------------------------------------------------- 260 (402)
T 2aq5_A 261 -------------------------------------------------------------------------------- 260 (402)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCe-e---eeEecCcce
Q 004270 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDL-K---SRWEVGCSL 518 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~-~---~~~~~~~~i 518 (764)
... ..|...+.+++|+|++++++++ +.||.|++||+.+++. + ..+.+..++
T Consensus 261 -----------------~~~-------~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v 316 (402)
T 2aq5_A 261 -----------------LQE-------LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ 316 (402)
T ss_dssp -----------------EEE-------CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCC
T ss_pred -----------------EEe-------ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcc
Confidence 000 1466778999999999988754 4799999999998873 3 333345899
Q ss_pred EEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (764)
Q Consensus 519 ~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~ 549 (764)
.+++|+|++.++++ .++.+++|++.++++
T Consensus 317 ~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 317 RGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred cceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99999999998875 567999999987654
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-31 Score=283.26 Aligned_cols=286 Identities=12% Similarity=0.153 Sum_probs=228.6
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCc---eEEEEecc------------------------------------
Q 004270 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE---ELVTFTHS------------------------------------ 222 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~---~~~~~~~~------------------------------------ 222 (764)
.++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966655 57899999999998 66655532
Q ss_pred -----------------CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC--Cceeeeeeec-ccccCeeEEEEecCCCE
Q 004270 223 -----------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRLQSVIRE-AHDNAIISLHFFANEPV 282 (764)
Q Consensus 223 -----------------~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~-~h~~~v~~l~~~~~~~~ 282 (764)
+.+.|.+++|+|+++.++++|+.||.|++||+. +++.+..+.. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 123699999999999335899999999999999 8877777752 46789999999999999
Q ss_pred EEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC---CCEEEEEeCCCcEEEEEeecccccccccchhhhH
Q 004270 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK 359 (764)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 359 (764)
|++++.|+.+++|++............+.+|...|.+++|+|+ +++|++++.|+.|++||+.++.....
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-------- 235 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-------- 235 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE--------
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee--------
Confidence 9999999999999987654322133456789999999999999 99999999999999999754321110
Q ss_pred HHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEE
Q 004270 360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 439 (764)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 439 (764)
T Consensus 236 -------------------------------------------------------------------------------- 235 (450)
T 2vdu_B 236 -------------------------------------------------------------------------------- 235 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-----
Q 004270 440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV----- 514 (764)
Q Consensus 440 ~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----- 514 (764)
+. .+|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..
T Consensus 236 ----------------------~~-------~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 285 (450)
T 2vdu_B 236 ----------------------WL-------FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK 285 (450)
T ss_dssp ----------------------EC-------CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred ----------------------ee-------cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence 00 2678888888888 888888888888888888888887777652
Q ss_pred ---------------------CcceEEEEEeecCCEEEEEe-CCCeEEEEEc--cCC---eEEEEeecCCCCeeEEEEcC
Q 004270 515 ---------------------GCSLVKIVYHRVNGLLATVA-DDLVIRLFDV--VAL---RMVRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 515 ---------------------~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~--~~~---~~~~~~~~h~~~i~~l~~s~ 567 (764)
...+.+++++|+++++++++ .++.|++|++ .++ +.+..+.+| +.|.+++|+|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp GGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred hhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 24688999999999999999 8999999999 666 778888888 8899999999
Q ss_pred CCcEEEEEeC------CCcEEEEEcC
Q 004270 568 DGKWLLSSGM------DGSLRIWDVI 587 (764)
Q Consensus 568 dg~~l~s~s~------dg~i~iwd~~ 587 (764)
++.++++++. +..|.+|.+.
T Consensus 365 ~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 365 DEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CcEEEEEecccCCCCCCcceEEEEEE
Confidence 6544443333 4457888754
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.3e-31 Score=272.19 Aligned_cols=306 Identities=10% Similarity=0.117 Sum_probs=216.9
Q ss_pred EEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe
Q 004270 165 LWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA 244 (764)
Q Consensus 165 iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~ 244 (764)
+|++.+.+.+..++.|...|.+++|+|+|++||+|+.+| +++||+.+++.......+ .+..+++.++++.++++|+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS---CCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC---CeEEEEEcCCCCEEEEEEC
Confidence 567778888888899999999999999999999998775 789999887766654432 4778888888884446788
Q ss_pred CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270 245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (764)
.|+.|++||+.+++.+..+. |...|.++.|+++. ++++ .|+.|++|++..... .+..+.. +...+++++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~---~~~~~~~---~~~~~~~s~ 147 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK---RITDDIR---FGGVCEFSN 147 (355)
T ss_dssp STTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC---BSSCCEE---EEEEEEEET
T ss_pred CccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce---eeEEecc---CCceEEEEc
Confidence 88999999999999988886 77799999998774 4443 378999999876521 2222222 334556666
Q ss_pred CCCEEEE--EeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270 325 NGRHILS--AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (764)
Q Consensus 325 ~~~~l~s--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
.+++. ++.||.|++||+.++........
T Consensus 148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~------------------------------------------------ 177 (355)
T 3vu4_A 148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQ------------------------------------------------ 177 (355)
T ss_dssp --TEEEEEESSCTTCEEEEECCC---------------------------------------------------------
T ss_pred --cEEEEeCCCcCcEEEEEECCCCCccccccc------------------------------------------------
Confidence 56665 57899999999875432111000
Q ss_pred EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcc-cceecCccccccccccCcEEEEE
Q 004270 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVA 481 (764)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~ 481 (764)
.. . ...... ...+ .+|...|++++
T Consensus 178 -----------------------~~-------~-----------------~~~~~p~~~~~--------~~h~~~v~~~~ 202 (355)
T 3vu4_A 178 -----------------------GV-------Q-----------------QKAILGKGVLI--------KAHTNPIKMVR 202 (355)
T ss_dssp --------------------------------------------------------CCEEE--------CCCSSCEEEEE
T ss_pred -----------------------cc-------c-----------------ccccCcccEEE--------EccCCceEEEE
Confidence 00 0 000001 1122 38999999999
Q ss_pred ECCCCCEEEEEeCCCe-EEEEECCCCCeeeeEe---cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE--EEEee-
Q 004270 482 CDSTNTLMISAGYHGD-IKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFE- 554 (764)
Q Consensus 482 ~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~--~~~~~- 554 (764)
|+|++++|++++.||+ |++||+.+++.+..+. +...|.+++|+|++++|++++.|++|++||+..+.. ...+.
T Consensus 203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~ 282 (355)
T 3vu4_A 203 LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG 282 (355)
T ss_dssp ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc
Confidence 9999999999999998 9999999999999998 568999999999999999999999999999976531 11111
Q ss_pred --------------------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270 555 --------------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 555 --------------------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 590 (764)
.+......++|++||++|++++.||.+++|++..+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 112334779999999999999999999999987644
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=7e-30 Score=268.79 Aligned_cols=277 Identities=10% Similarity=0.094 Sum_probs=232.2
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (764)
Q Consensus 238 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (764)
.++++++.|+.|++||+.+++.+..+. .| ..+.+++|+|+++.+ ++++.|+.|++||+... +.+..+..+. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~----~~~~~~~~~~-~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP-VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----NVIATVPAGS-S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT----EEEEEEECSS-S
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee-cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC----eEEEEEECCC-C
Confidence 378889999999999999999988887 44 458999999999976 67778999999998665 4555554444 8
Q ss_pred CeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270 317 PLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (764)
Q Consensus 317 v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (764)
+.+++|+|++++++.++ .++.|++||+.+++....+.
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------------------------------------ 113 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------------------------------------------ 113 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe------------------------------------------
Confidence 99999999999886554 67999999987654322211
Q ss_pred eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEE-EEEecCCcEEEEECcCCcccceecCcccccccccc
Q 004270 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474 (764)
Q Consensus 396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (764)
+...+.+++|+|+|+++ ++++.++.|++||+.+++....+. +.
T Consensus 114 ---------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~ 157 (391)
T 1l0q_A 114 ---------------------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VG 157 (391)
T ss_dssp ---------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CC
T ss_pred ---------------------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cC
Confidence 12567899999999987 677789999999999988777663 33
Q ss_pred CcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe---CCCeEEEEEccCCeEE
Q 004270 475 GEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA---DDLVIRLFDVVALRMV 550 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~---~d~~i~v~d~~~~~~~ 550 (764)
..+.+++|+|+++.+ ++++.++.|++||+.+++....+.....+.+++|+|+++++++++ .++.|++||+.+++.+
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 567999999999887 577789999999999999999988888999999999999999888 6899999999999999
Q ss_pred EEeecCCCCeeEEEEcCCCcEE-EEEeCCCcEEEEEcCccceEEEEeeCCc
Q 004270 551 RKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVILARQIDAIHVDVS 600 (764)
Q Consensus 551 ~~~~~h~~~i~~l~~s~dg~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 600 (764)
..+..|. .+.+++|+|||++| ++++.|+.|++||+.+++.+..+..+..
T Consensus 238 ~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 238 ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 9998775 47899999999987 5778899999999999999998876544
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.3e-30 Score=250.04 Aligned_cols=289 Identities=13% Similarity=0.171 Sum_probs=211.4
Q ss_pred CeEEEEEcCCCC----CeEEEEEcCCCC---EEEEEEcCCeEEEEEccCC---ceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270 171 KKKLYEFKGWGS----SISSCVSSPALD---VVAVGCSDGKIHVHNVRYD---EELVTFTHSMRGAVTALAFSSDGQPLL 240 (764)
Q Consensus 171 ~~~~~~~~~h~~----~i~~~~~sp~~~---~la~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~fs~d~~~~l 240 (764)
.+++..++...+ .+.++.|-..+- .++++++ ..|++|+..++ +.++++..+ ..+|..+.|.||..+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFA-EVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECC-SSCEEEECCCTTCCSCE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEecc-CceeEEEEEcCccccee
Confidence 345556654433 234455544443 5666665 78999999998 788888776 78999999999987666
Q ss_pred EEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecC----CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC
Q 004270 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (764)
.++-.+ -+...|.+++|+|+ ++.+++++.+ +++|++.
T Consensus 103 ~~~~~~-------------------~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~------------------ 143 (356)
T 2w18_A 103 CVALGN-------------------LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT------------------ 143 (356)
T ss_dssp EEEECS-------------------SSEEEEEEECC------CCEEEEEEEEE--EEEEEET------------------
T ss_pred eeeecc-------------------ccccceEEEEECCCccccccEEEeCCCe--EEEEecC------------------
Confidence 554311 35668999999999 8899998844 7788542
Q ss_pred CeeEEEecCCCEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270 317 PLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (764)
Q Consensus 317 v~~i~~~~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (764)
+++.+.+++ .|+.|++|++.
T Consensus 144 --------~g~lv~ss~~g~d~~V~~~~~s-------------------------------------------------- 165 (356)
T 2w18_A 144 --------KRRLVSSSGTLSDQQVEVMTFA-------------------------------------------------- 165 (356)
T ss_dssp --------TTEEEEEESSSTTCEEEEEEEC--------------------------------------------------
T ss_pred --------CCcEEEecccCCCCcEEEEEEC--------------------------------------------------
Confidence 333344422 46666666642
Q ss_pred eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccccc
Q 004270 395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474 (764)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (764)
|+|+.+.. + ..|.
T Consensus 166 ---------------------------------------~dG~~~~s--------------------~--------~~~~ 178 (356)
T 2w18_A 166 ---------------------------------------EDGGGKEN--------------------Q--------FLMP 178 (356)
T ss_dssp ---------------------------------------TTSCEEEE--------------------E--------EECC
T ss_pred ---------------------------------------CCCceeee--------------------e--------ccCC
Confidence 22332221 1 2677
Q ss_pred CcEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCeeeeEecC----cceEEEEEeecCCEE------------EEEeC
Q 004270 475 GEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLL------------ATVAD 535 (764)
Q Consensus 475 ~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~l------------a~~~~ 535 (764)
..++.++|++ ++.+|++++.|++|++||++++++++++..+ ..+.+++|+|+|.++ ++|+.
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 7788888888 7799999999999999999999999999743 467788999999876 56788
Q ss_pred CCeEEEEEccCCeEEEEe-----ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc--eEEEEEcC
Q 004270 536 DLVIRLFDVVALRMVRKF-----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSP 608 (764)
Q Consensus 536 d~~i~v~d~~~~~~~~~~-----~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--v~~l~~sp 608 (764)
|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+.+|+++.++.+|.. +.+++|||
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 999999999999988776 4777766555554 88999999999999999999999999987653 45699999
Q ss_pred CCCeEEEEEeCCCeEEEEec
Q 004270 609 NMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 609 ~g~~lat~~~d~~~i~lW~~ 628 (764)
||++||+++.|+ +|+||+.
T Consensus 337 DG~~LaSGS~D~-TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQKDG-NIFVYHY 355 (356)
T ss_dssp SSSEEEEECTTS-CEEEEEE
T ss_pred CCCEEEEEECCC-cEEEecC
Confidence 999999999999 6999985
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-30 Score=277.61 Aligned_cols=285 Identities=11% Similarity=0.065 Sum_probs=228.7
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec-------------------------------------
Q 004270 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR------------------------------------- 310 (764)
Q Consensus 268 ~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~------------------------------------- 310 (764)
..++.+++|+++|++|+++ .++.|++|++..+... ..+...
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHW-EFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEE-EEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcc-eeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 4578999999999966665 5789999998766400 011111
Q ss_pred -----------------cCCCCCCeeEEEecCCCEE-EEEeCCCcEEEEEee--cccccccccchhhhHHHhhccchhhh
Q 004270 311 -----------------SGHSAPPLCIRFYANGRHI-LSAGQDRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEE 370 (764)
Q Consensus 311 -----------------~~h~~~v~~i~~~~~~~~l-~s~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (764)
.+|...|.+++|+|++++| ++++.||.|++|++. ++.....+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---------------- 145 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR---------------- 145 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----------------
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec----------------
Confidence 2455579999999999996 889899999999987 4433322210
Q ss_pred hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270 371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 450 (764)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i 450 (764)
..+...+.+++|+|+|+++++|+.+|.+++
T Consensus 146 --------------------------------------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 146 --------------------------------------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp --------------------------------------------------EECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred --------------------------------------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 023378999999999999999999999999
Q ss_pred EECcCCcccc----eecCccccccccccCcEEEEEECCC---CCEEEEEeCCCeEEEEECCCCCeeeeEe--cCcceEEE
Q 004270 451 FNLQSGISRG----SYLDMSERSNYAHNGEVVGVACDST---NTLMISAGYHGDIKVWDFKGRDLKSRWE--VGCSLVKI 521 (764)
Q Consensus 451 ~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~i~~~ 521 (764)
|++.++.... .+ .+|...|.+++|+|+ +++|++++.|+.|++||+.+++.+..+. +...|.++
T Consensus 176 ~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPI--------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp EETTSCCCSSCCCCCS--------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred EecCCcccccccceee--------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence 9998877654 33 389999999999999 9999999999999999999998877643 45899999
Q ss_pred EEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC-------------------------CCCeeEEEEcCCCcEEEEEe
Q 004270 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-------------------------TDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 522 ~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h-------------------------~~~i~~l~~s~dg~~l~s~s 576 (764)
+|+ ++++|++++.|+.|++||+.+++++..+..+ ...|.+++|+|++++|++++
T Consensus 248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 999 9999999999999999999999998888632 35689999999999999998
Q ss_pred -CCCcEEEEEc--Ccc---ceEEEEeeCCceEEEEEcCCCCeEEEEEeC-----CCeEEEEecc
Q 004270 577 -MDGSLRIWDV--ILA---RQIDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVNR 629 (764)
Q Consensus 577 -~dg~i~iwd~--~~~---~~~~~~~~~~~v~~l~~sp~g~~lat~~~d-----~~~i~lW~~~ 629 (764)
.|+.|++|++ .++ +.+..+..+..|.+++|+|++.++++++.+ ...|.+|.++
T Consensus 327 ~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 327 EATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 8999999999 666 677888888889999999965444443332 2248888865
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=3.3e-30 Score=274.10 Aligned_cols=256 Identities=13% Similarity=0.238 Sum_probs=213.2
Q ss_pred cccccCeeEEEEecC-CCEEEEEcCCCcEEEEEecCC------CCCceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCC
Q 004270 265 EAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTT------DGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDR 336 (764)
Q Consensus 265 ~~h~~~v~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~------~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg 336 (764)
..|.+.|++++|+|+ +.+|++++.||.|++|++... .+....+..+.+|...+.+++|+|++. +|++++.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 379999999999997 679999999999999999762 112355667779999999999999888 999999999
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
.|++|++.......... ..
T Consensus 205 ~i~vwd~~~~~~~~~~~-------------------------------------------------------------~~ 223 (430)
T 2xyi_A 205 TICLWDINATPKEHRVI-------------------------------------------------------------DA 223 (430)
T ss_dssp CEEEEETTSCCBGGGEE-------------------------------------------------------------EC
T ss_pred eEEEEeCCCCCCCCcee-------------------------------------------------------------cc
Confidence 99999987642211100 00
Q ss_pred ecCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEECcCCc---ccceecCccccccccccCcEEEEEECCCCC-EEEE
Q 004270 417 LRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGI---SRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMIS 491 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~g~i~i~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s 491 (764)
......|...+.+++|+| ++.++++++.+|.|++||+.++. ....+ ..|...|++++|+|+++ ++++
T Consensus 224 ~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~v~~i~~~p~~~~~l~t 295 (430)
T 2xyi_A 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--------DAHTAEVNCLSFNPYSEFILAT 295 (430)
T ss_dssp SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE--------ECCSSCEEEEEECSSCTTEEEE
T ss_pred ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe--------ecCCCCeEEEEeCCCCCCEEEE
Confidence 011124668899999999 77899999999999999999873 33343 38999999999999987 6889
Q ss_pred EeCCCeEEEEECCC-CCeeeeEec-CcceEEEEEeecCC-EEEEEeCCCeEEEEEccC--------------CeEEEEee
Q 004270 492 AGYHGDIKVWDFKG-RDLKSRWEV-GCSLVKIVYHRVNG-LLATVADDLVIRLFDVVA--------------LRMVRKFE 554 (764)
Q Consensus 492 ~~~dg~v~iwd~~~-~~~~~~~~~-~~~i~~~~~s~~~~-~la~~~~d~~i~v~d~~~--------------~~~~~~~~ 554 (764)
++.||.|++||+++ .+.+..+.. ...|.+++|+|+++ +|++++.|+.|++||+.. .+++..+.
T Consensus 296 g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (430)
T 2xyi_A 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375 (430)
T ss_dssp EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC
Confidence 99999999999997 566777764 48999999999985 799999999999999987 46788889
Q ss_pred cCCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCcc
Q 004270 555 GHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILA 589 (764)
Q Consensus 555 ~h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~ 589 (764)
+|...|++++|+|+++ +|++++.||.|+||++..+
T Consensus 376 ~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999999999999 8999999999999999764
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=7e-30 Score=249.15 Aligned_cols=266 Identities=9% Similarity=0.063 Sum_probs=211.1
Q ss_pred CeEEEEEEeCCeEEEEecCCC---eEEEecCCCCcceEEEEEeCC---eEEEEECCeEEEEecCceEEEecccccceEEE
Q 004270 26 TENFVTVSVGKAFHIYNCAKL---NLVLVGPQLPKKIRALASYRD---YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLL 99 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~I~~~~~~~~---~~~~a~g~~i~vw~~~~~~~~~~~h~~~v~~l 99 (764)
.+.-+++....++++|+..++ +++++...|+.+|..+++.|| .+.+|-|+- |...|.++
T Consensus 53 ~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~v~sl 117 (356)
T 2w18_A 53 KEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNL---------------EIREIRAL 117 (356)
T ss_dssp CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSS---------------SEEEEEEE
T ss_pred CccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccc---------------cccceEEE
Confidence 455666666899999999999 999999999999999999997 555554432 44566777
Q ss_pred EE--e----CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe--CCCcEEEEeC-CC
Q 004270 100 LL--F----GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS--QEGSLQLWNI-ST 170 (764)
Q Consensus 100 ~~--~----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~--~dg~i~iwd~-~~ 170 (764)
++ + ++++++++.+ +++|++.+++ .+.+++ .|+.|++|++ .+
T Consensus 118 a~spd~~~~~~~l~s~g~~--~~v~~l~~g~----------------------------lv~ss~~g~d~~V~~~~~s~d 167 (356)
T 2w18_A 118 FCSSDDESEKQVLLKSGNI--KAVLGLTKRR----------------------------LVSSSGTLSDQQVEVMTFAED 167 (356)
T ss_dssp CC------CCEEEEEEEEE--EEEEEETTTE----------------------------EEEEESSSTTCEEEEEEECTT
T ss_pred EECCCccccccEEEeCCCe--EEEEecCCCc----------------------------EEEecccCCCCcEEEEEECCC
Confidence 64 6 7789987744 7788653322 233322 5899999999 55
Q ss_pred CeEEEEEcCCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEEccCCceEEEEeccC--CCCEEEEEEeeCCCCEE-----
Q 004270 171 KKKLYEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLL----- 240 (764)
Q Consensus 171 ~~~~~~~~~h~~~i~~~~~sp---~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~fs~d~~~~l----- 240 (764)
|+.+..+.+|...++.++|+| ++.+||+|+.|++|+|||+++|+.+.++..++ ...+.+++|+|+|. ++
T Consensus 168 G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~ 246 (356)
T 2w18_A 168 GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSH 246 (356)
T ss_dssp SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC-
T ss_pred CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEecc
Confidence 899999999999999999999 77999999999999999999999999997553 34788889999998 54
Q ss_pred -------EEEeCCCcEEEEECCCceeeeee----ecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270 241 -------ASGASSGVISIWNLEKRRLQSVI----REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 241 -------~sg~~dg~i~iwd~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (764)
++|+.|++|++||..+++.+..+ ..+|...+.+..++ +.++++++.|++|++||+.++ +++..
T Consensus 247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG----k~l~t 320 (356)
T 2w18_A 247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG----QCTAL 320 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC----SEEEE
T ss_pred CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC----cEEEE
Confidence 67889999999999999887765 24676665544444 789999999999999999876 67888
Q ss_pred ccCCCCCCe-eEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 310 RSGHSAPPL-CIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 310 ~~~h~~~v~-~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
+.+|...+. +++|+|||++|++|+.|++|++||+
T Consensus 321 L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 889988766 5899999999999999999999995
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=2.2e-30 Score=267.50 Aligned_cols=292 Identities=10% Similarity=0.178 Sum_probs=211.1
Q ss_pred EEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCe--EEEEecCceEEEecccccceEEEE--EeCCEE-EEEecCCc
Q 004270 40 IYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH--IAVVKRAHQVATWSRHSAKVNLLL--LFGEHI-LSIDIDGN 114 (764)
Q Consensus 40 iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~--i~vw~~~~~~~~~~~h~~~v~~l~--~~g~~l-~s~~~dg~ 114 (764)
||+..+...+.....|...|++++|+||+.++|+|.. +++|+..........+...+..+. ++++.+ ++++.|++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccE
Confidence 5666777777667789999999999999998888655 999997554333222222344444 467777 56777899
Q ss_pred EEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEcCCC
Q 004270 115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSPAL 193 (764)
Q Consensus 115 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~sp~~ 193 (764)
|++||..+++. +..+.. ...+..+.++++. ++++ .++.|++||+.++ +.+..+.. +...+++++
T Consensus 83 v~iWd~~~~~~----~~~~~~-~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-- 147 (355)
T 3vu4_A 83 VHIWDDVKKQD----VSRIKV-DAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-- 147 (355)
T ss_dssp EEEEETTTTEE----EEEEEC-SSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--
T ss_pred EEEEECCCCcE----EEEEEC-CCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--
Confidence 99999999887 566664 3456667777654 5555 4788999999988 76666554 455667777
Q ss_pred CEEEE--EEcCCeEEEEEccCCc----------------eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc-EEEEEC
Q 004270 194 DVVAV--GCSDGKIHVHNVRYDE----------------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV-ISIWNL 254 (764)
Q Consensus 194 ~~la~--g~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~-i~iwd~ 254 (764)
.++++ |+.+|.|++||+.+++ .+..+.. |.+.|++++|+|+|+ +|++|+.||+ |++||+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSS-EEEEEETTCSEEEEEET
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCC-EEEEEeCCCCEEEEEEC
Confidence 66776 5789999999999865 1555554 489999999999999 9999999998 999999
Q ss_pred CCceeeeeeecc-cccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee-------------------EeccCCC
Q 004270 255 EKRRLQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL-------------------RFRSGHS 314 (764)
Q Consensus 255 ~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-------------------~~~~~h~ 314 (764)
++++.+..+..+ |...|.+++|+|++++|++++.|++|++|++.......... .....+.
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 999999998744 99999999999999999999999999999987653211100 0111223
Q ss_pred CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~ 348 (764)
.+...++|+++++.+++++.||.+++|++..+..
T Consensus 306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 306 VRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 3457799999999999999999999999876543
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.7e-31 Score=302.30 Aligned_cols=262 Identities=15% Similarity=0.175 Sum_probs=213.2
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc--CCceEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcE
Q 004270 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVI 249 (764)
Q Consensus 174 ~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i 249 (764)
+..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+..| .++|++++|+++ +. +|++|+.||.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~~-~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGT-ILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSCS-EEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC-cCceEEEEecCCCCCC-EEEEEeCCCeE
Confidence 35678999999999999999999999999999999998 44566666554 889999999988 77 99999999999
Q ss_pred EEEECCCce--eeeeeecccccCeeEEEEecC--CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec-
Q 004270 250 SIWNLEKRR--LQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA- 324 (764)
Q Consensus 250 ~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~- 324 (764)
++||+.+++ ....+. +|...|.+++|+|+ +..+++++.||.|++||+..... .......+|...|.+++|+|
T Consensus 80 ~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--CCCEEEECCSSCEEEEEECCC
T ss_pred EEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--cceeEeecCCCceEEEEecCc
Confidence 999999886 555565 89999999999999 99999999999999999876633 23344568999999999999
Q ss_pred ------------CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270 325 ------------NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (764)
Q Consensus 325 ------------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (764)
++..+++++.||.|++||+..+......
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~---------------------------------------- 196 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------------------------------------- 196 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE----------------------------------------
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee----------------------------------------
Confidence 5899999999999999999765322111
Q ss_pred eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
......|...|.+++|+|+ ++++++|+.||.|++||+.++....... ...
T Consensus 197 ------------------------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~~ 249 (753)
T 3jro_A 197 ------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---LLK 249 (753)
T ss_dssp ------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC---BSS
T ss_pred ------------------------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE---Eec
Confidence 1111256689999999999 9999999999999999998874321111 001
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 507 (764)
...|...|++++|+|+++++++++.||.|++|++..+.
T Consensus 250 ~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 13688999999999999999999999999999998654
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=266.35 Aligned_cols=232 Identities=13% Similarity=0.127 Sum_probs=187.3
Q ss_pred EeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC---------CC
Q 004270 101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS---------TK 171 (764)
Q Consensus 101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~---------~~ 171 (764)
.+++.|++|+.||+|++||+.+++. +..+. ...+..+.++|. +++++.|++|++|+.. ++
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~----~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKT----ITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSC----EEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred CCCCEEEEECCCCcEEEEECCCCcE----EEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccCceEEeecCCc
Confidence 4788999999999999999999887 44444 233444556665 8999999999999654 56
Q ss_pred eEEEEEc-CCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCc
Q 004270 172 KKLYEFK-GWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (764)
Q Consensus 172 ~~~~~~~-~h~~~i~~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~ 248 (764)
+.+..+. +|.+.|.+++|+| +++++++|+.||.|++||+++++.+.....++...+.+++|+|+|. +|++|+.||.
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~ 193 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGI 193 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSC
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCE
Confidence 6566654 7778999999999 9999999999999999999999987777666677899999999999 9999999999
Q ss_pred EEEEECCCceee-eeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCe--eEEEecC
Q 004270 249 ISIWNLEKRRLQ-SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL--CIRFYAN 325 (764)
Q Consensus 249 i~iwd~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~--~i~~~~~ 325 (764)
|++||+++++.. ..+..+|.+.|.+++|+|++.+|++++ |+.|++||++..... ..+..+..|...+. +++|+|+
T Consensus 194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-LAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-BSSCCCBC-----CCEEEEECTT
T ss_pred EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-eeecccccccccccceEEEECCC
Confidence 999999999887 677633999999999999999999999 559999999876432 11222223444444 6999999
Q ss_pred CCEEEEEeC-CCcEEEEEeecc
Q 004270 326 GRHILSAGQ-DRAFRLFSVIQD 346 (764)
Q Consensus 326 ~~~l~s~~~-dg~i~i~d~~~~ 346 (764)
+++|++++. |+.+++|++...
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEecCCCCcEEEEEEccc
Confidence 999999998 999999998654
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=4e-29 Score=271.21 Aligned_cols=332 Identities=11% Similarity=0.069 Sum_probs=260.1
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc--cCCceEEEEec
Q 004270 144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV--RYDEELVTFTH 221 (764)
Q Consensus 144 ~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~--~~~~~~~~~~~ 221 (764)
+++|++ ..+++++.+++|.+||..+++++.++..+.. +.+++|+|+|++|++++.|+.|.+||+ .+++.+.++..
T Consensus 144 ~~~p~~--~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPN--LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGG--EEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCC--EEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 378887 6788889999999999999999999984333 889999999999999999999999999 88998888875
Q ss_pred cCCCCEEEEEEee----CCCCEEEEEe-CCCcEEEEECCCceeeeeeecc---------ccc-CeeEEEEecCCC-EEEE
Q 004270 222 SMRGAVTALAFSS----DGQPLLASGA-SSGVISIWNLEKRRLQSVIREA---------HDN-AIISLHFFANEP-VLMS 285 (764)
Q Consensus 222 ~~~~~v~~l~fs~----d~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~---------h~~-~v~~l~~~~~~~-~l~s 285 (764)
...+..++|+| ||+ ++++++ .+++|.+||..+++++..+... |.. .+.++.++|+++ ++++
T Consensus 221 --g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 221 --GIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp --CSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred --CCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 35689999999 999 666666 5899999999999988887621 223 788999999776 5667
Q ss_pred EcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364 (764)
Q Consensus 286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (764)
...++.|.+||+...... .+... .+...+..+.|+|+|+++++++ .+++|.+||+.+++....+..
T Consensus 298 ~~~~g~i~vvd~~~~~~l--~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~---------- 364 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNL--TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV---------- 364 (543)
T ss_dssp ETTTTEEEEEECTTSSSC--EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC----------
T ss_pred ECCCCeEEEEEecCCCcc--eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc----------
Confidence 778899999998765321 11222 3566788899999999877655 477888888765432211100
Q ss_pred cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (764)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 444 (764)
T Consensus 365 -------------------------------------------------------------------------------- 364 (543)
T 1nir_A 365 -------------------------------------------------------------------------------- 364 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEEEe-CCCeEEEEECCC-------CCeeeeEecC
Q 004270 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAG-YHGDIKVWDFKG-------RDLKSRWEVG 515 (764)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~-~dg~v~iwd~~~-------~~~~~~~~~~ 515 (764)
+ ...|.+....+ ++|+ +..++++. .|++|.+||+.+ .+.++++..+
T Consensus 365 -----------g-------------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 365 -----------G-------------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp -----------S-------------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred -----------C-------------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 0 01354433333 4666 56666665 589999999998 7888999876
Q ss_pred -cceEEEEEeecCCEEEEEe-------CCCeEEEEEccCCeEE-EEe--------ecCCCCeeEEEEcCCCcEEEEEe--
Q 004270 516 -CSLVKIVYHRVNGLLATVA-------DDLVIRLFDVVALRMV-RKF--------EGHTDRITDFCFSEDGKWLLSSG-- 576 (764)
Q Consensus 516 -~~i~~~~~s~~~~~la~~~-------~d~~i~v~d~~~~~~~-~~~--------~~h~~~i~~l~~s~dg~~l~s~s-- 576 (764)
..+..++++|++++|++++ .+++|.|||+.+++.. ..+ ..|...+..+.|+|||++|.++.
T Consensus 420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~ 499 (543)
T 1nir_A 420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN 499 (543)
T ss_dssp CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEEC
T ss_pred CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeec
Confidence 5778899999999999987 2679999999999876 443 35678899999999999988662
Q ss_pred ---CCCcEEEEEcCccceEEEEeeCC
Q 004270 577 ---MDGSLRIWDVILARQIDAIHVDV 599 (764)
Q Consensus 577 ---~dg~i~iwd~~~~~~~~~~~~~~ 599 (764)
.|+.|.|||.++++++..++.+.
T Consensus 500 ~~~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 500 GKNDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCCCCCeEEEEECCCceEEEeecCCC
Confidence 47999999999999999998654
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.7e-29 Score=267.06 Aligned_cols=257 Identities=16% Similarity=0.298 Sum_probs=218.7
Q ss_pred EEecccccceEEEEEe---CCEEEEEecCCcEEEEEccCCcc------cccceeeEecCCccccEEEEeCCCCCCEEEEE
Q 004270 87 ATWSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEE------NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG 157 (764)
Q Consensus 87 ~~~~~h~~~v~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~------~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~ 157 (764)
....+|.+.|+++++. +.+|++++.||.|++||+..... ...+...+..|...+..+.|+|++. ..|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN-GYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST-TEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC-CeEEEE
Confidence 3477899999999984 56899999999999999986211 1223667778888889999999983 289999
Q ss_pred eCCCcEEEEeCCCCeE-------EEEEcCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEccCC---ceEEEEeccCCCC
Q 004270 158 SQEGSLQLWNISTKKK-------LYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYD---EELVTFTHSMRGA 226 (764)
Q Consensus 158 ~~dg~i~iwd~~~~~~-------~~~~~~h~~~i~~~~~sp-~~~~la~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~ 226 (764)
+.||.|++||+.++.. ...+.+|...|.+++|+| ++.++++++.||.|++||++++ +.+..+.. |...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCC
Confidence 9999999999987422 466789999999999999 6789999999999999999987 46666654 4789
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEECCC-ceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCC--
Q 004270 227 VTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDG-- 302 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~-- 302 (764)
|++++|+|++++++++|+.||.|++||+++ +..+..+. +|...|.+++|+|+++ +|++++.|+.|++|++.....
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 999999999987899999999999999998 46677777 8999999999999985 799999999999999987322
Q ss_pred --------CceeeEeccCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecc
Q 004270 303 --------DPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 303 --------~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~ 346 (764)
.+.++....+|...|.+++|+|++. ++++++.||.|++|++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 1356777889999999999999998 8999999999999998754
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-30 Score=265.09 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=212.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc---------CCceEEEEecc
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR---------YDEELVTFTHS 222 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~---------~~~~~~~~~~~ 222 (764)
+.+++|+.||.|++||+.+++.+..+. ...|.++.++|+ +++++.|+.|++|+.. +++.+..+...
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 689999999999999999999988887 467888889998 9999999999999654 66667777766
Q ss_pred CCCCEEEEEEee--CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 223 MRGAVTALAFSS--DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 223 ~~~~v~~l~fs~--d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
|.+.|.+++|+| +++ ++++|+.||.|++||+++++........|...|.+++|+|++.+|++|+.|+.|++||+...
T Consensus 124 ~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 678999999999 998 99999999999999999998877665456778999999999999999999999999998876
Q ss_pred CCCceeeEeccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEe
Q 004270 301 DGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379 (764)
Q Consensus 301 ~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (764)
.. ....+.+ |..+|++++|+|++.+|++++ |+.|++||+++......+..
T Consensus 203 ~~---~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~------------------------- 253 (343)
T 3lrv_A 203 DQ---ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT------------------------- 253 (343)
T ss_dssp TS---CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-------------------------
T ss_pred CC---CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-------------------------
Confidence 32 2144556 999999999999999999999 55999999876543222110
Q ss_pred eecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc
Q 004270 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 459 (764)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~ 459 (764)
T Consensus 254 -------------------------------------------------------------------------------- 253 (343)
T 3lrv_A 254 -------------------------------------------------------------------------------- 253 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecCccccccccccCcE--EEEEECCCCCEEEEEeC-CCeEEEEECCCCCeeeeEecCcceEEEEEee---cCCEEEEE
Q 004270 460 GSYLDMSERSNYAHNGEV--VGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR---VNGLLATV 533 (764)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~---~~~~la~~ 533 (764)
+ ..|...+ .+++|+|++++|++++. |+.+++|++.+....... .++..++|++ +...++++
T Consensus 254 --~--------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 254 --Y--------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp --C--------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEE
T ss_pred --c--------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEE
Confidence 0 0111111 57899999999999888 999999998766543332 5677788888 88899999
Q ss_pred eCCCeEEEEEcc
Q 004270 534 ADDLVIRLFDVV 545 (764)
Q Consensus 534 ~~d~~i~v~d~~ 545 (764)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999988887543
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.4e-30 Score=269.32 Aligned_cols=287 Identities=12% Similarity=0.070 Sum_probs=188.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEE----eccCCCCEEEEEEee--------CCCCEEEEEeC
Q 004270 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTF----THSMRGAVTALAFSS--------DGQPLLASGAS 245 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~l~fs~--------d~~~~l~sg~~ 245 (764)
..|...+....+++++.+||+|+.|++|+|||+++++..... ..+|.+.|.+++|+| |++ +||+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~ 164 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGD 164 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEET
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEEC
Confidence 345556666677888899999999999999999988765432 245689999999998 777 9999999
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (764)
|++|+|||+.++..+..+. .|...|.+++|+|++. +|++++.|++|++||+...............+...+....+.+
T Consensus 165 D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 9999999999888777777 7999999999999875 8999999999999998766432222111111111111111111
Q ss_pred CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (764)
Q Consensus 325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (764)
.....
T Consensus 244 ~~~~~--------------------------------------------------------------------------- 248 (393)
T 4gq1_A 244 LVNTC--------------------------------------------------------------------------- 248 (393)
T ss_dssp GC------------------------------------------------------------------------------
T ss_pred ceeee---------------------------------------------------------------------------
Confidence 10000
Q ss_pred EEccceeecceeecCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270 405 WRLQNFVLGEHILRPCPENPTAVKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
...++...+.++.++ ++|+.+++++.|+.+++||+..+.....+. .|...+..+.+.
T Consensus 249 --------------~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~--------~~~~~~~~~~~~ 306 (393)
T 4gq1_A 249 --------------HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS--------DSTMKLGPKNLL 306 (393)
T ss_dssp -----------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------------CCS
T ss_pred --------------ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe--------eecCccccEEEc
Confidence 001334667778776 799999999999999999998887766654 677777777777
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEee--cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCee
Q 004270 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR--VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 561 (764)
Q Consensus 484 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~--~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~ 561 (764)
|+.+.+... .......+++ ++.++++|+.||.|++||+.+++.+..+.+|..+|.
T Consensus 307 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~ 363 (393)
T 4gq1_A 307 PNVQGISLF-----------------------PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV 363 (393)
T ss_dssp CSEEEECSS-----------------------CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE
T ss_pred ccccccccc-----------------------CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE
Confidence 764432211 1111223333 344677888999999999999999888899999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 562 DFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 562 ~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
+++|||||++||+++.|| +.+|.+.
T Consensus 364 svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 364 DFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 999999999999999776 6666654
No 128
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-30 Score=294.43 Aligned_cols=262 Identities=15% Similarity=0.208 Sum_probs=219.7
Q ss_pred eeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcCCCCCeEEEEEcCC--CCEEEEEEcCCeEE
Q 004270 131 GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIH 206 (764)
Q Consensus 131 ~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~i~~~~~sp~--~~~la~g~~dg~i~ 206 (764)
..+..|.+.+..++|+|++ +++++|+.||.|++||+. +++.+..+.+|.+.|.+++|+|+ +++|++|+.||.|+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg--~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG--KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp -----CCCCEEEECCCSSS--CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eecccCcceeEEEEECCCC--CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 3456788888899999999 789999999999999998 56788899999999999999998 99999999999999
Q ss_pred EEEccCCc--eEEEEeccCCCCEEEEEEeeC--CCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEec--
Q 004270 207 VHNVRYDE--ELVTFTHSMRGAVTALAFSSD--GQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFA-- 278 (764)
Q Consensus 207 iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~-- 278 (764)
+||+.+++ .+..+.. |...|++++|+|+ +. ++++|+.||.|++||+.++. ....+. +|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC
T ss_pred EEECCCCcccccccccC-CCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCcc
Confidence 99999987 5555544 4889999999999 77 99999999999999998873 333444 7999999999999
Q ss_pred -----------CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC---CCEEEEEeCCCcEEEEEee
Q 004270 279 -----------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN---GRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 279 -----------~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~dg~i~i~d~~ 344 (764)
++..+++++.||.|++||+............+.+|..+|.+++|+|+ ++++++++.||.|++||+.
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 58899999999999999998876555677788899999999999999 8999999999999999987
Q ss_pred cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (764)
++...... .......+.
T Consensus 238 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~ 254 (753)
T 3jro_A 238 NEQGPWKK---------------------------------------------------------------TLLKEEKFP 254 (753)
T ss_dssp SSSSCCBC---------------------------------------------------------------CBSSSSCCS
T ss_pred CCCCccee---------------------------------------------------------------EEeccCCCC
Confidence 65321110 111122456
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
..+.+++|+|+|+++++|+.||.|++|++..+....
T Consensus 255 ~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~ 290 (753)
T 3jro_A 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (753)
T ss_dssp SCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence 789999999999999999999999999998655433
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.5e-29 Score=265.22 Aligned_cols=203 Identities=10% Similarity=0.040 Sum_probs=151.9
Q ss_pred ecCCCCCCCCeEEEEEcc--------CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC-C
Q 004270 417 LRPCPENPTAVKACTISA--------CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T 487 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~--------~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~ 487 (764)
+....+|...|.+++|+| +|++|++|+.|++|++||+.++.....+. .|...|.+++|+|++ .
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--------~~~~~v~~v~~~p~~~~ 200 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--------PLSSPGISVQFRPSNPN 200 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--------ECSSCEEEEEEETTEEE
T ss_pred ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--------CCCCCcEEEEECCCCCc
Confidence 345568889999999998 89999999999999999998887766654 889999999999987 4
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEe--------------------------cCcceEEEEEe-ecCCEEEEEeCCCeEE
Q 004270 488 LMISAGYHGDIKVWDFKGRDLKSRWE--------------------------VGCSLVKIVYH-RVNGLLATVADDLVIR 540 (764)
Q Consensus 488 ~l~s~~~dg~v~iwd~~~~~~~~~~~--------------------------~~~~i~~~~~s-~~~~~la~~~~d~~i~ 540 (764)
+|++++.||+|++||+.+++...... +...+.++.|+ ++++.+++++.|+.++
T Consensus 201 ~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~ 280 (393)
T 4gq1_A 201 QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWL 280 (393)
T ss_dssp EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEE
T ss_pred eEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEE
Confidence 89999999999999998875443221 22567788887 7999999999999999
Q ss_pred EEEccCCeEEEEeecCCCCeeEEEEcC--------------------CCcEEEEEeCCCcEEEEEcCccceEEEEe-eCC
Q 004270 541 LFDVVALRMVRKFEGHTDRITDFCFSE--------------------DGKWLLSSGMDGSLRIWDVILARQIDAIH-VDV 599 (764)
Q Consensus 541 v~d~~~~~~~~~~~~h~~~i~~l~~s~--------------------dg~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~ 599 (764)
+||+.+++....+..|...+..+.++| ++.++++++.||+|++||+.+++++..+. ++.
T Consensus 281 vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~ 360 (393)
T 4gq1_A 281 RWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM 360 (393)
T ss_dssp EEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS
T ss_pred EEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC
Confidence 999999888777777766555544443 34477888999999999999998877655 455
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 600 SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 600 ~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
+|.+++|||||++||+++.++ +.+|.+.
T Consensus 361 ~V~svafspdG~~LA~as~~G--v~lvrL~ 388 (393)
T 4gq1_A 361 PIVDFCWHQDGSHLAIATEGS--VLLTRLM 388 (393)
T ss_dssp CEEEEEECTTSSEEEEEESSE--EEEEEEG
T ss_pred cEEEEEEcCCCCEEEEEeCCC--eEEEEEe
Confidence 799999999999999998664 8888764
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=5.7e-28 Score=262.15 Aligned_cols=347 Identities=13% Similarity=0.097 Sum_probs=265.0
Q ss_pred ceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeC--CCCe
Q 004270 95 KVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI--STKK 172 (764)
Q Consensus 95 ~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~--~~~~ 172 (764)
+...+.+++..+++.+.|++|.+||..+++. +.++..... ...++++|++ ++|++++.++.|.+||+ .+++
T Consensus 141 ~~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~----~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 141 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKI----VKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCSCCCGGGEEEEEEGGGTEEEEEETTTCCE----EEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCE
T ss_pred cccccCCCCEEEEEEcCCCeEEEEECCCceE----EEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCc
Confidence 3444556788899999999999999999988 677764443 5567799999 89999999999999999 8999
Q ss_pred EEEEEcCCCCCeEEEEEcC----CCCEEEEEEc-CCeEEEEEccCCceEEEEecc----------CCCCEEEEEEeeCCC
Q 004270 173 KLYEFKGWGSSISSCVSSP----ALDVVAVGCS-DGKIHVHNVRYDEELVTFTHS----------MRGAVTALAFSSDGQ 237 (764)
Q Consensus 173 ~~~~~~~h~~~i~~~~~sp----~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~----------~~~~v~~l~fs~d~~ 237 (764)
.+.++.. ...+..++|+| +|++|++++. +++|.+||..+++.+..+... ....+.++.++|++.
T Consensus 214 ~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 214 KVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred EEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 9999985 56789999999 9999999884 899999999999999888642 133789999999988
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccC----
Q 004270 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSG---- 312 (764)
Q Consensus 238 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~---- 312 (764)
.++++...++.|.+||+.+.+.+......+...+.++.|+|++++++++ ..+++|.+||..+. +++..+..
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----~l~~~i~~g~~p 368 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----RLSALVDVGKTP 368 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSB
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC----eEEEeeccCCCC
Confidence 6888888999999999988765542222466778899999999976655 56899999988765 45544443
Q ss_pred CCCCCeeEEEecC-CCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 313 HSAPPLCIRFYAN-GRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 313 h~~~v~~i~~~~~-~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
|......+ ++|+ +..++++. .|++|.+||+.+......
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~--------------------------------------- 408 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY--------------------------------------- 408 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT---------------------------------------
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh---------------------------------------
Confidence 54444333 4676 55566664 578899998764210000
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccc
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 470 (764)
..+.+..+
T Consensus 409 ----------------------------------------------------------------~~~~v~~l-------- 416 (543)
T 1nir_A 409 ----------------------------------------------------------------AWKKVAEL-------- 416 (543)
T ss_dssp ----------------------------------------------------------------BTSEEEEE--------
T ss_pred ----------------------------------------------------------------cCeEEEEE--------
Confidence 01111222
Q ss_pred ccccCcEEEEEECCCCCEEEEEe-------CCCeEEEEECCCCCee-eeE---------ecCcceEEEEEeecCCEEEEE
Q 004270 471 YAHNGEVVGVACDSTNTLMISAG-------YHGDIKVWDFKGRDLK-SRW---------EVGCSLVKIVYHRVNGLLATV 533 (764)
Q Consensus 471 ~~h~~~v~~l~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~-~~~---------~~~~~i~~~~~s~~~~~la~~ 533 (764)
..|...+..++++|++++|++++ .+++|.+||+.+++.. ..+ .+...+..+.|+|+|+.++++
T Consensus 417 ~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 417 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 25667778899999999999887 3789999999999877 443 224788999999999999877
Q ss_pred e-----CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE
Q 004270 534 A-----DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571 (764)
Q Consensus 534 ~-----~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~ 571 (764)
. .++.|.|||..+++++.+++.+.- .+|+|++
T Consensus 497 ~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~------~~p~g~~ 533 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKTLKLKAVVKDPRL------ITPTGKF 533 (543)
T ss_dssp EECCTTSCCEEEEEETTTTEEEEEECCTTC------CSEEEEE
T ss_pred eecCCCCCCeEEEEECCCceEEEeecCCCc------cCCCeee
Confidence 3 479999999999999999986532 3466554
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4e-27 Score=248.12 Aligned_cols=300 Identities=11% Similarity=0.061 Sum_probs=232.9
Q ss_pred CCEEEEEEeeCCCCEEEEEe----CCC----cEEEEEC--CCceee--eeeecccccCeeEEEEec--------------
Q 004270 225 GAVTALAFSSDGQPLLASGA----SSG----VISIWNL--EKRRLQ--SVIREAHDNAIISLHFFA-------------- 278 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~----~dg----~i~iwd~--~~~~~~--~~~~~~h~~~v~~l~~~~-------------- 278 (764)
..+...+|.+.|..++++|+ .+| .|++||+ .+++.+ ..+. +|...+..+++.+
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 36777888898887888886 467 8999999 888876 3355 7888888777764
Q ss_pred CCCEEEEEcCC------CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC---cEEEEEeeccccc
Q 004270 279 NEPVLMSASAD------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQS 349 (764)
Q Consensus 279 ~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~~~~~ 349 (764)
.+..++.++.+ +.|++||++.. ..+.+.+|...+.+++|+|||++|++++.++ .|++||+.+++..
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-----~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-----SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-----CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence 15566666554 79999998643 2345567889999999999999999999875 8999998765321
Q ss_pred ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEE
Q 004270 350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 429 (764)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~ 429 (764)
.. ..+...+.+
T Consensus 217 ~l---------------------------------------------------------------------~~~~~~~~~ 227 (415)
T 2hqs_A 217 QV---------------------------------------------------------------------ASFPRHNGA 227 (415)
T ss_dssp EE---------------------------------------------------------------------ECCSSCEEE
T ss_pred Ee---------------------------------------------------------------------ecCCCcccC
Confidence 10 023367899
Q ss_pred EEEccCCCEEE-EEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CC--eEEEEEC
Q 004270 430 CTISACGNFAV-LGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDF 503 (764)
Q Consensus 430 ~~~s~~g~~l~-~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~v~iwd~ 503 (764)
++|+|+|++|+ +++.+| .|++||+.++... .+ ..|...+.+++|+|+|++|++++. ++ .|.+||+
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l--------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV--------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC--------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC--------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 99999999888 555555 4999999887653 33 367889999999999999988886 44 6888899
Q ss_pred CCCCeeeeEecCcceEEEEEeecCCEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC-
Q 004270 504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG- 579 (764)
Q Consensus 504 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg- 579 (764)
.+++..........+.+++|+|+|++|++++.+ ..|++||+.+++. ..+..|. .+.+++|+|||++|++++.|+
T Consensus 299 ~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 299 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETT
T ss_pred CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCC
Confidence 888755444445778899999999999988764 5899999998877 4566664 899999999999999988777
Q ss_pred --cEEEEEcCccceEEEEeeC-CceEEEEEcCCCC
Q 004270 580 --SLRIWDVILARQIDAIHVD-VSITALSLSPNMD 611 (764)
Q Consensus 580 --~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~g~ 611 (764)
.|++||+. +.....+..+ ..|.+++|+|.-.
T Consensus 377 ~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 377 GSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred ccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 79999987 5556666655 4699999999653
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.4e-26 Score=265.26 Aligned_cols=355 Identities=10% Similarity=0.069 Sum_probs=256.3
Q ss_pred CCCeEEEEEcCCCCEEEEEEc-CC-----eEEEEEccCCceEEEEeccCC-----------------------CCEEEEE
Q 004270 181 GSSISSCVSSPALDVVAVGCS-DG-----KIHVHNVRYDEELVTFTHSMR-----------------------GAVTALA 231 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~-----------------------~~v~~l~ 231 (764)
...+.+++|||||++|++++. |+ .|++||+.+++....+..+.. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 567899999999999999998 88 899999999987776654311 2378999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEe
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (764)
|+|||+ .|++++. +.|++||+.++. ....+. .|...+..++|+|||++|++++ ++.|.+|+++.. .....
T Consensus 116 ~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g----~~~~~ 187 (741)
T 2ecf_A 116 WSPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG----RQMQL 187 (741)
T ss_dssp ECTTSS-EEEEEET-TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT----EEEEC
T ss_pred ECCCCC-EEEEEeC-CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC----CEEEe
Confidence 999999 7777775 999999999882 333444 5788899999999999999987 468999988654 33333
Q ss_pred ccCCCC----------------CCeeEEEecCCCEEEEEeCCC-cEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270 310 RSGHSA----------------PPLCIRFYANGRHILSAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 372 (764)
Q Consensus 310 ~~~h~~----------------~v~~i~~~~~~~~l~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (764)
...+.. .+..++|+|||++|++++.|+ .+..|..... ...
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~-----~p~------------------ 244 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV-----YAD------------------ 244 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE-----CSS------------------
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC-----CCC------------------
Confidence 323322 257899999999999887553 3444441110 000
Q ss_pred cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 004270 373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 452 (764)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~ 452 (764)
...+..+.+...|. ......|.+||
T Consensus 245 ---------------------------------------------------~~~~~~~~~~~~g~----~~~~~~l~~~d 269 (741)
T 2ecf_A 245 ---------------------------------------------------RTDVIEQRYPAAGD----ANVQVKLGVIS 269 (741)
T ss_dssp ---------------------------------------------------CEEEEEEECCBTTS----CCCEEEEEEEC
T ss_pred ---------------------------------------------------cccceEeecCCCCC----CCCeeEEEEEE
Confidence 00111112221111 00112567778
Q ss_pred CcC-CcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-----CCeEEEEECCCCCeeeeEecCc-----ceEEE
Q 004270 453 LQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVWDFKGRDLKSRWEVGC-----SLVKI 521 (764)
Q Consensus 453 ~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~-----~i~~~ 521 (764)
+.+ +........ ..|...+..++| |||++|++++. +..|++||+.+++....+..+. .+..+
T Consensus 270 ~~~~~~~~~~~~~------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 270 PAEQAQTQWIDLG------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp SSTTCCCEEECCC------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred CCCCCceEEecCC------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence 877 664433210 147788999999 99999987764 5789999999998877766543 45689
Q ss_pred EEeecCCEEEEEeCCCeEEEEEcc-CCeEEEEeecCCCCeeEE-EEcCCCcEEEE-EeCCC--cEEEEEcCc-cceEEEE
Q 004270 522 VYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDF-CFSEDGKWLLS-SGMDG--SLRIWDVIL-ARQIDAI 595 (764)
Q Consensus 522 ~~s~~~~~la~~~~d~~i~v~d~~-~~~~~~~~~~h~~~i~~l-~~s~dg~~l~s-~s~dg--~i~iwd~~~-~~~~~~~ 595 (764)
+|+|||+++++++.++.++||.++ +++ ...+..|...|..+ .|+|||++|+. ++.++ .+++|++.. +.....+
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 999999999999999988888765 445 78888888889887 59999997764 45555 899999874 6666677
Q ss_pred eeCCceEEEEEcCCCCeEEEEEeCC---CeEEEEecc
Q 004270 596 HVDVSITALSLSPNMDVLATAHVDQ---NGVYLWVNR 629 (764)
Q Consensus 596 ~~~~~v~~l~~sp~g~~lat~~~d~---~~i~lW~~~ 629 (764)
.....+.+++|||||++|+....+. ..+++|+..
T Consensus 422 ~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 422 SKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred ccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 6666689999999999998876653 147888764
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.9e-26 Score=242.98 Aligned_cols=295 Identities=11% Similarity=0.076 Sum_probs=224.8
Q ss_pred EEeCCCCCCEEEEEe----CCC----cEEEEeC--CCCeEE--EEEcCCCCCeEEEEEcC--------------CCCEEE
Q 004270 144 IMHPDTYLNKVIVGS----QEG----SLQLWNI--STKKKL--YEFKGWGSSISSCVSSP--------------ALDVVA 197 (764)
Q Consensus 144 ~~~p~~~~~~l~~~~----~dg----~i~iwd~--~~~~~~--~~~~~h~~~i~~~~~sp--------------~~~~la 197 (764)
.|.+.+. +.+++|+ .+| .+++||+ .+++++ ..+.+|...+..+++++ .+..++
T Consensus 69 ~w~~~g~-~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~ 147 (415)
T 2hqs_A 69 AWSALGI-DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIA 147 (415)
T ss_dssp HHHTTTC-CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEE
T ss_pred HHHhcCC-CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEE
Confidence 3555553 5676776 467 8999999 999988 45888988888887775 256677
Q ss_pred EEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC---cEEEEECCCceeeeeeecccc
Q 004270 198 VGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG---VISIWNLEKRRLQSVIREAHD 268 (764)
Q Consensus 198 ~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~h~ 268 (764)
.++.+ +.|++||+.. .....+..+ ...+.+++|+|||+ .|++++.++ .|++||+.+++... +. .|.
T Consensus 148 ~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~-~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~~~-l~-~~~ 222 (415)
T 2hqs_A 148 YVVQTNGGQFPYELRVSDYDG-YNQFVVHRS-PQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VA-SFP 222 (415)
T ss_dssp EEEECSSSSCCEEEEEEETTS-CSCEEEEEE-SSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEE-EE-CCS
T ss_pred EEEecCCCCccceEEEEcCCC-CCCEEEeCC-CCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcEEE-ee-cCC
Confidence 66654 7999999974 455666554 68899999999999 888888775 99999999988754 44 588
Q ss_pred cCeeEEEEecCCCEEE-EEcCCCc--EEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-CCc--EEEEE
Q 004270 269 NAIISLHFFANEPVLM-SASADNS--IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRA--FRLFS 342 (764)
Q Consensus 269 ~~v~~l~~~~~~~~l~-s~~~d~~--i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~--i~i~d 342 (764)
..+.+++|+|||+.|+ +++.++. |++||+... . ...+..|...+.+++|+|||++|++++. ++. |.+||
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----C-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----C-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 8999999999999877 6666665 777776554 2 2455678888999999999998888775 343 33334
Q ss_pred eecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
+
T Consensus 298 ~------------------------------------------------------------------------------- 298 (415)
T 2hqs_A 298 I------------------------------------------------------------------------------- 298 (415)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 3
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC---CeEE
Q 004270 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---GDIK 499 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~ 499 (764)
.++.... + ..|...+.+++|+|+|++|++++.+ ..|+
T Consensus 299 -------------------------------~~~~~~~-l--------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 299 -------------------------------NGGAPQR-I--------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp -------------------------------TSSCCEE-C--------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred -------------------------------CCCCEEE-E--------ecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence 2222111 1 1455677889999999988888764 5899
Q ss_pred EEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570 (764)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~ 570 (764)
+||+.+++... +..+..+.+++|+|+|++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|.-.
T Consensus 339 ~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 339 KQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 99999888754 33345899999999999999988877 89999987 556788999999999999999643
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.6e-25 Score=255.68 Aligned_cols=367 Identities=11% Similarity=0.084 Sum_probs=256.2
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC---CeEEEEEcCCCCEEEEEEcC---------CeEEE
Q 004270 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS---SISSCVSSPALDVVAVGCSD---------GKIHV 207 (764)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~---~i~~~~~sp~~~~la~g~~d---------g~i~i 207 (764)
...++|+|++ +++++ +.||+|++||+.+++....+..|.. .|.+++|||||++|++++.+ +.+.+
T Consensus 19 ~~~~~~spdg--~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 19 DPEAKWISDT--EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCBSSSS--CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccEEcCCC--cEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 4567899999 55555 7899999999999999888888765 49999999999999999874 78889
Q ss_pred EEccCCceEEEEecc--CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC---------------
Q 004270 208 HNVRYDEELVTFTHS--MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA--------------- 270 (764)
Q Consensus 208 wd~~~~~~~~~~~~~--~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~--------------- 270 (764)
||+.+++. ..+... +...+..++|+|||+ .|+.++. +.|++||+.+++...... .+...
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTT
T ss_pred EECCCCce-EeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEe
Confidence 99998876 333322 233488999999999 6777764 799999999987766555 33333
Q ss_pred ---eeEEEEecCCCEEEEEcCC-CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecc
Q 004270 271 ---IISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 271 ---v~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~ 346 (764)
+.+++|+|||+.|++++.| +.+++|++..... .+...+..+.|.++|.. ..+..|++||+.++
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG---------SIYPTVKPYHYPKAGSE----NPSISLHVIGLNGP 238 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS---------SSSCCCEEEECCBTTSC----CCEEEEEEEESSSS
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCC---------cCCCcceeccCCCCCCC----CCeeEEEEEECCCC
Confidence 3789999999999988764 5688887754321 13345788888887752 33457888888765
Q ss_pred cccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCC
Q 004270 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 426 (764)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 426 (764)
.....+.... ....+...
T Consensus 239 ~~~~~l~~~~--------------------------------------------------------------~~~~~~~~ 256 (723)
T 1xfd_A 239 THDLEMMPPD--------------------------------------------------------------DPRMREYY 256 (723)
T ss_dssp CCCEECCCCC--------------------------------------------------------------CGGGSSEE
T ss_pred ceeEEeeCCc--------------------------------------------------------------cCCCccce
Confidence 4322221100 00012356
Q ss_pred eEEEEEccCCCEEEEEecC----CcEEEEECcCCcccceecCccccccccccCcE----EEEEECCCCCEEEE--EeCCC
Q 004270 427 VKACTISACGNFAVLGTAG----GWIERFNLQSGISRGSYLDMSERSNYAHNGEV----VGVACDSTNTLMIS--AGYHG 496 (764)
Q Consensus 427 v~~~~~s~~g~~l~~g~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~l~~~~~~~~l~s--~~~dg 496 (764)
+..++|+|||+++++.... ..|.+||+.+++....+. ..+...+ ..++|+|+|+.|+. +..++
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-------DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-------EECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-------eccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 8899999999998776543 579999999987665543 1233333 37899999997775 44666
Q ss_pred ------eEEEEE-CCCCCe--eeeEe-cCcceEE-EEEeecCCEEEEEeCC---CeEEEEEccCC--eEEEEeec---CC
Q 004270 497 ------DIKVWD-FKGRDL--KSRWE-VGCSLVK-IVYHRVNGLLATVADD---LVIRLFDVVAL--RMVRKFEG---HT 557 (764)
Q Consensus 497 ------~v~iwd-~~~~~~--~~~~~-~~~~i~~-~~~s~~~~~la~~~~d---~~i~v~d~~~~--~~~~~~~~---h~ 557 (764)
.|.+|| ..+++. ...+. .+..+.. ++|+|||+.|++.+.+ +.+++|++... .....+.+ |.
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 409 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN 409 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSS
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCC
Confidence 567777 344441 33443 3444554 6999999999876655 78999998643 23344544 67
Q ss_pred CCeeEEEEcCCCcEEEEEeCC-C--cEEEEEcCccceEEEE
Q 004270 558 DRITDFCFSEDGKWLLSSGMD-G--SLRIWDVILARQIDAI 595 (764)
Q Consensus 558 ~~i~~l~~s~dg~~l~s~s~d-g--~i~iwd~~~~~~~~~~ 595 (764)
..+..++|||||++|+..... . ...+++..++..+..+
T Consensus 410 ~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 410 CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 778999999999988865432 2 3445566566555444
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=3.6e-26 Score=261.04 Aligned_cols=350 Identities=9% Similarity=0.040 Sum_probs=244.6
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC---CEEEEEEeeCCCCEEEEEeCC---------CcE
Q 004270 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG---AVTALAFSSDGQPLLASGASS---------GVI 249 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~l~fs~d~~~~l~sg~~d---------g~i 249 (764)
..+.+++|+|||+++++ +.||.|++||+.+++....+..+ .. .|.+++|+|||+ .|++++.+ +.|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~-~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK-KIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT-TTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccc-cccccccceEEECCCCC-EEEEEecCccceeecceeeE
Confidence 34678899999997776 78999999999999887777554 33 499999999999 77777653 788
Q ss_pred EEEECCCceeeeeee--cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCC-----------
Q 004270 250 SIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP----------- 316 (764)
Q Consensus 250 ~iwd~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~----------- 316 (764)
.+||+.+++. ..+. .+|...+..++|+|||+.|++++. +.|++|+..... .......+...
T Consensus 94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~----~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ----AIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC----CEEEECCCBTTTEEEEECCHHH
T ss_pred EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc----eEEEecCCCCCceECcccceeE
Confidence 9999998876 2222 134556899999999999999886 789999876542 22222333333
Q ss_pred -------CeeEEEecCCCEEEEEeCC-CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270 317 -------PLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (764)
Q Consensus 317 -------v~~i~~~~~~~~l~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (764)
+.+++|+|||+.|++++.| +.+.+|++.....
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~---------------------------------------- 207 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG---------------------------------------- 207 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----------------------------------------
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----------------------------------------
Confidence 3789999999999988755 4566676532110
Q ss_pred ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccc
Q 004270 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 468 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~ 468 (764)
.....+..+.+.++|.. ..+..|.+||+.++.....+... .
T Consensus 208 ---------------------------------~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~--~ 248 (723)
T 1xfd_A 208 ---------------------------------SIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPP--D 248 (723)
T ss_dssp ---------------------------------SSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCC--C
T ss_pred ---------------------------------cCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEeeCC--c
Confidence 01123566777777652 23458999999988754444310 0
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCCCeeeeEecC--cce----EEEEEeecCCEEEEE--eCC
Q 004270 469 SNYAHNGEVVGVACDSTNTLMISAGY----HGDIKVWDFKGRDLKSRWEVG--CSL----VKIVYHRVNGLLATV--ADD 536 (764)
Q Consensus 469 ~~~~h~~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~--~~i----~~~~~s~~~~~la~~--~~d 536 (764)
....+...+..++|+|||+++++... +..|++||+.+++....+... ..+ ..++|+|||+.|+.. ..+
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 01124678999999999998877653 367999999999877665432 333 378999999977754 456
Q ss_pred C------eEEEEE-ccCCe--EEEEeecCCCCeeE-EEEcCCCcEEEEEeCC---CcEEEEEcCccc--eEEEEee----
Q 004270 537 L------VIRLFD-VVALR--MVRKFEGHTDRITD-FCFSEDGKWLLSSGMD---GSLRIWDVILAR--QIDAIHV---- 597 (764)
Q Consensus 537 ~------~i~v~d-~~~~~--~~~~~~~h~~~i~~-l~~s~dg~~l~s~s~d---g~i~iwd~~~~~--~~~~~~~---- 597 (764)
+ .|++|| ..+++ +...+..+...+.. ++|||||++|+..+.+ +.+++|++.... ....+..
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 408 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE 408 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC
Confidence 6 566777 34443 14555544444554 6999999999866655 789999987532 3333332
Q ss_pred CCceEEEEEcCCCCeEEEEEeC
Q 004270 598 DVSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 598 ~~~v~~l~~sp~g~~lat~~~d 619 (764)
...+..++|||||++|+.....
T Consensus 409 ~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 409 NCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp SCCCCEEEECTTSSEEEEECCS
T ss_pred CCCeEEEEECCCCCEEEEEccC
Confidence 3348899999999999876543
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=4.6e-25 Score=252.57 Aligned_cols=334 Identities=11% Similarity=0.111 Sum_probs=242.2
Q ss_pred CccccEEEEeCCCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEEcCCCC------------------------CeEE
Q 004270 137 DKFTPTCIMHPDTYLNKVIVGSQ-EG-----SLQLWNISTKKKLYEFKGWGS------------------------SISS 186 (764)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~~~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~i~~ 186 (764)
...+..+.|+|++ ++|++++. ++ .|++||+.+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~SpdG--~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDG--SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTS--SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCC--CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 4456788999999 89999988 88 899999999998887765543 3889
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEccCCc--eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004270 187 CVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (764)
Q Consensus 187 ~~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 264 (764)
++|||||++|++++. +.|.+||+.++. ....+..+ ...+.+++|+|||+ .|+.++ ++.|++||+.+++......
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~-~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG-EGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS-SSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC-CcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEecc
Confidence 999999999999987 999999999873 33444443 67899999999999 777776 5699999999987765544
Q ss_pred cccccC----------------eeEEEEecCCCEEEEEcCCC---------------------------------cEEEE
Q 004270 265 EAHDNA----------------IISLHFFANEPVLMSASADN---------------------------------SIKMW 295 (764)
Q Consensus 265 ~~h~~~----------------v~~l~~~~~~~~l~s~~~d~---------------------------------~i~vw 295 (764)
.+... +.+++|+|||++|++++.|+ .|.+|
T Consensus 190 -~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 190 -DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp -CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred -CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 33322 47899999999999987665 56677
Q ss_pred EecC-CCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-----CCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270 296 IFDT-TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 369 (764)
Q Consensus 296 ~~~~-~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (764)
|++. . ....+.....|...+..++| |||++|++++. +..|++||+.++.....+...
T Consensus 269 d~~~~~--~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------- 331 (741)
T 2ecf_A 269 SPAEQA--QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-------------- 331 (741)
T ss_dssp CSSTTC--CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE--------------
T ss_pred ECCCCC--ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC--------------
Confidence 6654 3 22222222257788999999 99999997764 456888887654322211100
Q ss_pred hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~ 449 (764)
....-..+..++|+|+|++++++..+|.+.
T Consensus 332 --------------------------------------------------~~~~~~~~~~~~~spdg~~~~~~~~~g~~~ 361 (741)
T 2ecf_A 332 --------------------------------------------------SPTWVPLHNSLRFLDDGSILWSSERTGFQH 361 (741)
T ss_dssp --------------------------------------------------CSSCCCCCSCCEECTTSCEEEEECTTSSCE
T ss_pred --------------------------------------------------CCCcCCcCCceEECCCCeEEEEecCCCccE
Confidence 000001345678999999999999999777
Q ss_pred EEECc-CCcccceecCccccccccccCcEEEE-EECCCCCEEEEEe-CCC--eEEEEECCC-CCeeeeEecCcceEEEEE
Q 004270 450 RFNLQ-SGISRGSYLDMSERSNYAHNGEVVGV-ACDSTNTLMISAG-YHG--DIKVWDFKG-RDLKSRWEVGCSLVKIVY 523 (764)
Q Consensus 450 i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~l~s~~-~dg--~v~iwd~~~-~~~~~~~~~~~~i~~~~~ 523 (764)
+|.+. .+. ...+. .|...+..+ .|+|+++.++..+ .++ .+++|++.. +.....+.....+..++|
T Consensus 362 l~~~~~~~~-~~~l~--------~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~ 432 (741)
T 2ecf_A 362 LYRIDSKGK-AAALT--------HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASF 432 (741)
T ss_dssp EEEECSSSC-EEESC--------CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEE
T ss_pred EEEEcCCCC-eeeee--------ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEE
Confidence 77665 333 44432 677788887 5999998776544 455 899999864 555566666677889999
Q ss_pred eecCCEEEEEeCC----CeEEEEEccCCeEEEEee
Q 004270 524 HRVNGLLATVADD----LVIRLFDVVALRMVRKFE 554 (764)
Q Consensus 524 s~~~~~la~~~~d----~~i~v~d~~~~~~~~~~~ 554 (764)
+||+++++....+ ..+.+++...+ .++.+.
T Consensus 433 spdg~~l~~~~~~~~~p~~~~l~~~~~~-~~~~l~ 466 (741)
T 2ecf_A 433 ARNASVYVDSWSNNSTPPQIELFRANGE-KIATLV 466 (741)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEEETTSC-EEECSS
T ss_pred CCCCCEEEEEecCCCCCCeEEEEEcCCC-eEEEec
Confidence 9999998877554 47889988644 344443
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3.7e-24 Score=220.58 Aligned_cols=298 Identities=11% Similarity=0.133 Sum_probs=211.6
Q ss_pred EEEEEeCCCcEEEEECC-Cc--eeeeeeecccccCeeEEEEecCCCEEEEEcCC-CcEEEEEecCCCCCceeeEeccCCC
Q 004270 239 LLASGASSGVISIWNLE-KR--RLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHS 314 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~-~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (764)
++++++.++.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|+++...+....+.....+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 55555789999999995 34 333333 477889999999999988888876 9999999985444444555544444
Q ss_pred CCCeeEEEecCCCEEEEEeC-CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270 315 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (764)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (764)
.+..++|+|+++++++++. ++.+.+||+..+......
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------------- 122 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV----------------------------------------- 122 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE-----------------------------------------
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc-----------------------------------------
Confidence 8899999999998877765 788999998521100000
Q ss_pred EeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcC-Cccccee--cCccccc
Q 004270 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQS-GISRGSY--LDMSERS 469 (764)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~-~~~~~~~--~~~~~~~ 469 (764)
..+ .....+.+++|+|+|+++++++ .++.|.+|++.+ +...... ..
T Consensus 123 ---------------------~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----- 172 (343)
T 1ri6_A 123 ---------------------DVV----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----- 172 (343)
T ss_dssp ---------------------EEE----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE-----
T ss_pred ---------------------ccc----cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc-----
Confidence 000 0114577889999999888887 889999999987 5443211 00
Q ss_pred cccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCC--CCe--eeeEe---c----CcceEEEEEeecCCEEEEEe-CC
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG--RDL--KSRWE---V----GCSLVKIVYHRVNGLLATVA-DD 536 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~--~~~--~~~~~---~----~~~i~~~~~s~~~~~la~~~-~d 536 (764)
.......+.+++|+|++++++.++ .++.|.+|++.. ++. ..... . ...+..++|+|++++|+++. .+
T Consensus 173 ~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 173 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 012345788999999999776555 889999999953 433 22222 1 13466899999999887554 78
Q ss_pred CeEEEEEcc----CCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEc--Cccc--eEEEEeeCCceEEEEEc
Q 004270 537 LVIRLFDVV----ALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILAR--QIDAIHVDVSITALSLS 607 (764)
Q Consensus 537 ~~i~v~d~~----~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~--~~~~--~~~~~~~~~~v~~l~~s 607 (764)
+.|++||+. +.+.+..+..+.. +..++|+|||++|++++ .++.|.+|++ .+++ .+..+.......+++|.
T Consensus 253 ~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~ 331 (343)
T 1ri6_A 253 SLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVN 331 (343)
T ss_dssp TEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred CEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEE
Confidence 999999998 3455666665554 89999999999988887 6899999954 4664 34555555567888888
Q ss_pred CCCC
Q 004270 608 PNMD 611 (764)
Q Consensus 608 p~g~ 611 (764)
|+.+
T Consensus 332 ~~~~ 335 (343)
T 1ri6_A 332 AHEG 335 (343)
T ss_dssp EEC-
T ss_pred cccC
Confidence 7654
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=9e-25 Score=248.59 Aligned_cols=366 Identities=8% Similarity=0.017 Sum_probs=236.7
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEccCCce--EEEEeccC---------------CCCEEEEEEeeCCCCEEEEEeCC
Q 004270 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSM---------------RGAVTALAFSSDGQPLLASGASS 246 (764)
Q Consensus 184 i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~---------------~~~v~~l~fs~d~~~~l~sg~~d 246 (764)
+..+.|+ ++.+++++.++ | +||+.+++. ...+.... ...|.+++|+|| + .++.+. +
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~-~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G-LVVLFT-Q 100 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-T-EEEEEE-T
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-C-eEEEEE-C
Confidence 4456777 66777777777 8 999999987 33333221 146999999999 5 444443 5
Q ss_pred CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC-----CCCCceeeEeccCCCC------
Q 004270 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----TDGDPRLLRFRSGHSA------ 315 (764)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~~~~~h~~------ 315 (764)
+.|++||+.+++..... .+...+.+++|+|||+.|+++ .|+.|++|++.. .. .......+..
T Consensus 101 ~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~----~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR----AIAVTIDGTETLVYGQ 173 (706)
T ss_dssp TEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC----CEESCSCCBTTEEESS
T ss_pred CEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC----cEEeccCCCCCeEccc
Confidence 99999999988765544 467789999999999999985 679999999876 42 2222222222
Q ss_pred --------CCeeEEEecCCCEEEEEeCC-CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270 316 --------PPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (764)
Q Consensus 316 --------~v~~i~~~~~~~~l~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (764)
.+.+++|+|||++|++++.| ..+..+.+....... +.........
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~-----------------------~~~~~~~y~~--- 227 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE-----------------------AESKPLYYPM--- 227 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS-----------------------CEEEEECCCB---
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC-----------------------CceEEeeCCC---
Confidence 25899999999999988733 223333322111000 0000000000
Q ss_pred ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEECcCCcccce
Q 004270 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-----WIERFNLQSGISRGS 461 (764)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-----~i~i~~~~~~~~~~~ 461 (764)
.........+++|++.+..... +.....+...+.+++|+|||+++++++.++ .|.+||+.++.....
T Consensus 228 ------~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 228 ------AGTPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT 299 (706)
T ss_dssp ------TTSCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred ------CCCCCCeeEEEEEECCCCceEe--eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence 0011234678899987655321 111224557799999999999999988775 999999999843333
Q ss_pred ecCcccccccccc---CcEEEEEECC--CCCEEEEEeCCCeEEEEECC-CCCeeeeEecC-cceEE-EEEeecCCEEEEE
Q 004270 462 YLDMSERSNYAHN---GEVVGVACDS--TNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVK-IVYHRVNGLLATV 533 (764)
Q Consensus 462 ~~~~~~~~~~~h~---~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~-~~i~~-~~~s~~~~~la~~ 533 (764)
+.. ..+. ..+..++|+| +|+++++++.||.+++|.+. ++..+..+..+ ..+.. ++|+|+++.|+++
T Consensus 300 ~~~------~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 300 LFV------ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp EEE------EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE
T ss_pred EEE------ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE
Confidence 220 0122 1246789999 99999999999999999886 55655655544 55665 7999999988766
Q ss_pred eCC-C----eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC----CcEEEEEcCccceEEEEeeCCceEEE
Q 004270 534 ADD-L----VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD----GSLRIWDVILARQIDAIHVDVSITAL 604 (764)
Q Consensus 534 ~~d-~----~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~v~~l 604 (764)
+.+ + .|+.||+.+++ ...+. |...+.+++|||||++|+.+..+ +.|++||+.+++ ...+....++...
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~~~~~~~ 450 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAKNPDTGY 450 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC------
T ss_pred ecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeeccccchhhhc
Confidence 554 3 67777877765 34444 67789999999999998876443 569999999887 4444433334333
Q ss_pred EE
Q 004270 605 SL 606 (764)
Q Consensus 605 ~~ 606 (764)
.|
T Consensus 451 ~~ 452 (706)
T 2z3z_A 451 AM 452 (706)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=4e-24 Score=219.12 Aligned_cols=283 Identities=9% Similarity=0.056 Sum_probs=205.8
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeE
Q 004270 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLR 308 (764)
Q Consensus 230 l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~ 308 (764)
..|.+++..++++++.++.|.+||+.+++....+. .+...+ .++|+|+++++++++. ++.|.+||...... ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~---~~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP---KVV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC---EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce---eEE
Confidence 45666666578888899999999999999888877 455566 9999999996666655 88999998876531 144
Q ss_pred eccCCCCCCeeEEEecCCCEEEEEeCCC---cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccc
Q 004270 309 FRSGHSAPPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 385 (764)
Q Consensus 309 ~~~~h~~~v~~i~~~~~~~~l~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (764)
....+..+..+++|+|+|++++++..++ .|.+||+.+++....+.
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------------- 125 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-------------------------------- 125 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--------------------------------
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--------------------------------
Confidence 4455556665599999999999555543 89999986654322211
Q ss_pred cccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCc-EEEEECcCCcccceec
Q 004270 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGW-IERFNLQSGISRGSYL 463 (764)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g~-i~i~~~~~~~~~~~~~ 463 (764)
.......++++|+|++++++ ..++. +.+|++..........
T Consensus 126 -------------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 126 -------------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp -------------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred -------------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 11456899999999866655 45578 9999987543322111
Q ss_pred CccccccccccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCe---eeeEecCcceEEEEEeecCCEEEEEe-CCCe
Q 004270 464 DMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDL---KSRWEVGCSLVKIVYHRVNGLLATVA-DDLV 538 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~---~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~ 538 (764)
. ....+.....+++|+|++++++.+ ..++.|++||+.+++. +..+.....+..++|+|+|++++++. .++.
T Consensus 169 -~---~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 169 -Q---EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp -E---EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE
T ss_pred -C---ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCE
Confidence 0 001334568999999999966554 4689999999999998 88888888889999999999777665 4788
Q ss_pred EEEEEccCCeE--EEEeecC----CCC---eeEEEEcCCCcEEEEEe-CCCcEEEEEcCccc
Q 004270 539 IRLFDVVALRM--VRKFEGH----TDR---ITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR 590 (764)
Q Consensus 539 i~v~d~~~~~~--~~~~~~h----~~~---i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~ 590 (764)
|.+||+.+++. +..+..+ ... ...++|+|||++|++++ .++.|.+||+....
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999999887 5444433 222 35589999999887655 56799999998644
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=2.9e-24 Score=244.37 Aligned_cols=329 Identities=9% Similarity=0.046 Sum_probs=231.5
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee-eeeecccc-----------------cCeeEEEEecCCCEEEEEcC
Q 004270 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIREAHD-----------------NAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~h~-----------------~~v~~l~~~~~~~~l~s~~~ 288 (764)
+..+.|. |. .+++++.++ | +||+.+++.+ ..+. .|. ..|.+++|+|| ..++.+.
T Consensus 28 ~~~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~- 99 (706)
T 2z3z_A 28 VVGLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRF-SAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT- 99 (706)
T ss_dssp CTTCEEE--TT-EEEEEETTE-E-EEEC-------CEEE-EHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred CCCCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEee-chhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence 4557787 44 466666777 8 9999999873 3333 232 46999999999 6655553
Q ss_pred CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec-----ccccccccchhhhHHHhh
Q 004270 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ-----DQQSRELSQRHVAKRARK 363 (764)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~ 363 (764)
++.+++||+... .. ..+..+...+.+++|+|||+.|+++ .++.|++|++.+ +...........
T Consensus 100 ~~~i~~~d~~~~----~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~------ 167 (706)
T 2z3z_A 100 QGGLVGFDMLAR----KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE------ 167 (706)
T ss_dssp TTEEEEEETTTT----EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT------
T ss_pred CCEEEEEECCCC----ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC------
Confidence 599999998654 22 2334567789999999999999985 678999999976 433221111000
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
.+ .. +.. ....+...+.+++|||||++|++++
T Consensus 168 ---------------------------~~------------~~------g~~---~~~ee~~~~~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 168 ---------------------------TL------------VY------GQA---VHQREFGIEKGTFWSPKGSCLAFYR 199 (706)
T ss_dssp ---------------------------TE------------EE------SSC---CGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred ---------------------------Ce------------Ec------ccc---hhhhhcCCCceEEECCCCCEEEEEE
Confidence 00 00 000 0001124567899999999999987
Q ss_pred ---------------------------------cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE
Q 004270 444 ---------------------------------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (764)
Q Consensus 444 ---------------------------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (764)
.++.|.+||+.++....... ...|...+..++|+|||+.|+
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------GEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------CSCTTCEEEEEEECTTSSEEE
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------CCCCceeEeeEEEECCCCEEE
Confidence 44689999999887544332 125677899999999999999
Q ss_pred EEeCCC-----eEEEEECCCCCeeeeEe-cC--c---ceEEEEEee--cCCEEEEEeCCCeEEEEEcc-CCeEEEEeecC
Q 004270 491 SAGYHG-----DIKVWDFKGRDLKSRWE-VG--C---SLVKIVYHR--VNGLLATVADDLVIRLFDVV-ALRMVRKFEGH 556 (764)
Q Consensus 491 s~~~dg-----~v~iwd~~~~~~~~~~~-~~--~---~i~~~~~s~--~~~~la~~~~d~~i~v~d~~-~~~~~~~~~~h 556 (764)
+++.++ .|++||..+++....+. .. . .+..++|+| ||++++++..++.++||+++ +++.+..+..|
T Consensus 274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~ 353 (706)
T 2z3z_A 274 VAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353 (706)
T ss_dssp EEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred EEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence 988775 89999999984333332 21 1 246789999 99999999999999999887 67788888888
Q ss_pred CCCeeE-EEEcCCCcEEEEEeC-CC----cEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC---CeEEEEe
Q 004270 557 TDRITD-FCFSEDGKWLLSSGM-DG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ---NGVYLWV 627 (764)
Q Consensus 557 ~~~i~~-l~~s~dg~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~---~~i~lW~ 627 (764)
...+.. ++|+|||++|+.++. ++ .|..||+.+++ ...+.....+.+++|||||++|+.++.+. ..|++|+
T Consensus 354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 888887 799999998876554 44 67777877766 44555556699999999999998876653 2599999
Q ss_pred ccc
Q 004270 628 NRC 630 (764)
Q Consensus 628 ~~~ 630 (764)
.+.
T Consensus 433 ~~~ 435 (706)
T 2z3z_A 433 IGK 435 (706)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=5.9e-23 Score=210.40 Aligned_cols=289 Identities=11% Similarity=0.103 Sum_probs=204.4
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCce-EEEEec
Q 004270 144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEE-LVTFTH 221 (764)
Q Consensus 144 ~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~-~~~~~~ 221 (764)
+|.+++. ..+++.+.++.|.+||..+++.+..+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus 4 ~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSN-FGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCC-EEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCC-EEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 3455552 346677888999999999999999888777777 9999999997777666 89999999999987 666655
Q ss_pred cCCCCEEEEEEeeCCCCEEEEEeCCC---cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCCc-EEEEE
Q 004270 222 SMRGAVTALAFSSDGQPLLASGASSG---VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNS-IKMWI 296 (764)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~-i~vw~ 296 (764)
+ ..+..+++|+|+|+ +++++..++ .|.+||+.+++.+..+. +.....+++|+|++++++++ ..++. +.+|+
T Consensus 82 ~-~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 82 G-QSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp C-SSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred C-CCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 4 55555599999999 666555443 89999999999888776 44567999999999855544 55688 99999
Q ss_pred ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccc---cccccchhhhHHHhhccchhhhhc
Q 004270 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQ---SRELSQRHVAKRARKLKMKEEELK 372 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 372 (764)
++..................+..++|+|+|++++.++ .++.+.+||+.+++. ...+.
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~------------------- 218 (331)
T 3u4y_A 158 IDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG------------------- 218 (331)
T ss_dssp ECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-------------------
T ss_pred ECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-------------------
Confidence 8854221111011123445679999999999766554 688999999876543 11110
Q ss_pred cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEE
Q 004270 373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERF 451 (764)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~ 451 (764)
....+..++++|+|++++++.. ++.|.+|
T Consensus 219 --------------------------------------------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~ 248 (331)
T 3u4y_A 219 --------------------------------------------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNF 248 (331)
T ss_dssp --------------------------------------------------CSSCCCCEEECTTSSEEEEECSSEEEEEEE
T ss_pred --------------------------------------------------CCCCCceEEECCCCCEEEEEEcCCCEEEEE
Confidence 1145567899999998877654 6789999
Q ss_pred ECcCCcc--cceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCe
Q 004270 452 NLQSGIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDL 508 (764)
Q Consensus 452 ~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~ 508 (764)
|+.+++. ...+..... ...........++|+|++++|++++ .++.|.+||+.+...
T Consensus 249 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 249 NQLSGTLSFVKSFGHGLL-IDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp ETTTTEEEEEEEEECCCC-CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ECCCCceeeecccccccc-cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 9998876 222211000 0001112235689999999886655 567999999987543
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1e-22 Score=209.71 Aligned_cols=303 Identities=15% Similarity=0.196 Sum_probs=205.4
Q ss_pred EEEEE-eCCCcEEEEeCC-CC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC-CeEEEEEcc--CCce--EEEEeccC
Q 004270 153 KVIVG-SQEGSLQLWNIS-TK--KKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVR--YDEE--LVTFTHSM 223 (764)
Q Consensus 153 ~l~~~-~~dg~i~iwd~~-~~--~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d-g~i~iwd~~--~~~~--~~~~~~~~ 223 (764)
.++++ +.++.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-- 82 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-- 82 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--
Confidence 44544 779999999985 34 334444 467789999999999999998887 999999998 5553 334443
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC---CceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLE---KRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDT 299 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~ 299 (764)
...+..++|+|+|+.+++++..++.|.+||+. ..+....+. ....+.+++|+|+++++++++ .++.|.+|+++.
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 34789999999999444444458899999994 344444444 344689999999999888777 899999999975
Q ss_pred CCCCceee---EeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270 300 TDGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375 (764)
Q Consensus 300 ~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (764)
.. ..... .........+..++|+|+++++++++ .++.+.+|++...........
T Consensus 161 ~~-~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~--------------------- 218 (343)
T 1ri6_A 161 DG-HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ--------------------- 218 (343)
T ss_dssp TS-CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE---------------------
T ss_pred CC-ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe---------------------
Confidence 22 11111 11222345788999999999776655 789999999853211000000
Q ss_pred eeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECc
Q 004270 376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQ 454 (764)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~ 454 (764)
. ...+.........+..++|+|+|++++++. .++.|.+|++.
T Consensus 219 ----------------------------~---------~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 219 ----------------------------T---------LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp ----------------------------E---------EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ----------------------------e---------ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 0 000000001125677899999999887555 78999999998
Q ss_pred --CCc--ccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEEC--CCCC--eeeeEecCcceEEEEEee
Q 004270 455 --SGI--SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDF--KGRD--LKSRWEVGCSLVKIVYHR 525 (764)
Q Consensus 455 --~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~--~~~~--~~~~~~~~~~i~~~~~s~ 525 (764)
++. ....+. .+. .+.+++|+|++++|++++ .++.|.+|++ .+++ .+..+.......+++|.+
T Consensus 262 ~~~~~~~~~~~~~--------~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~ 332 (343)
T 1ri6_A 262 EDGSVLSKEGFQP--------TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNA 332 (343)
T ss_dssp TTSCCEEEEEEEE--------CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEE
T ss_pred CCCCceEEeeeec--------CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEc
Confidence 332 222221 233 388999999999888887 6899999955 4554 344455556677888877
Q ss_pred cCC
Q 004270 526 VNG 528 (764)
Q Consensus 526 ~~~ 528 (764)
+.+
T Consensus 333 ~~~ 335 (343)
T 1ri6_A 333 HEG 335 (343)
T ss_dssp EC-
T ss_pred ccC
Confidence 543
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2e-22 Score=208.58 Aligned_cols=277 Identities=9% Similarity=0.079 Sum_probs=215.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEc-------CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270 181 GSSISSCVSSPALDVVAVGCS-------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd 253 (764)
...+..++++|+++++++++. ++.|.+||..+++.+..+..+ ..+..++|+|+|+.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 456789999999999988874 568999999999988888764 45789999999985566666789999999
Q ss_pred CCCceeeeeeeccccc--------CeeEEEEecCCCEEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 254 LEKRRLQSVIREAHDN--------AIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 254 ~~~~~~~~~~~~~h~~--------~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
+.+++.+..+..++.. .+.+++|+|+++.+++++ .++.|.+||.... +.......+...+.+++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----KLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----EEEEEECCCCTTCCCCEEE
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----ceEEEecCCCCccceEEEC
Confidence 9999988887732221 278899999999777765 4788999987655 4555555566678899999
Q ss_pred cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
|+++++++++.++.+.+||+.+++....+.
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~-------------------------------------------------- 223 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKK-------------------------------------------------- 223 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEE--------------------------------------------------
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEE--------------------------------------------------
Confidence 999999998888888888865432211100
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (764)
.. ..++...+.+++|+
T Consensus 224 -------------------------------------------------~~---------------~~~~~~~~~~~~~s 239 (353)
T 3vgz_A 224 -------------------------------------------------LL---------------DDGKEHFFINISLD 239 (353)
T ss_dssp -------------------------------------------------CC---------------CSSSCCCEEEEEEE
T ss_pred -------------------------------------------------cC---------------CCCCCcccceEEEC
Confidence 00 01345567889999
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe-CCCeEEEEEccCCeEEEEeecCCCCee
Q 004270 484 STNTLMISAGY-HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRIT 561 (764)
Q Consensus 484 ~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~~~~~~~h~~~i~ 561 (764)
|++++++.++. ++.|.+||..+++.+..+....+ ..++|+|++++++++. .++.|.+||..+++.+..+..+ ..+.
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~ 317 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPN 317 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCC
Confidence 99987766664 48999999999998888877654 5799999999766665 6899999999999999888754 4689
Q ss_pred EEEEcCCCcEEEEEeCCC
Q 004270 562 DFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 562 ~l~~s~dg~~l~s~s~dg 579 (764)
.++|+|||++|+++..++
T Consensus 318 ~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECTTSCEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEccc
Confidence 999999999887776554
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.7e-22 Score=207.58 Aligned_cols=299 Identities=9% Similarity=0.009 Sum_probs=221.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC--CeEEEEEcCCCCEEEE-EEcCCeEEEEEccCCceEEEEeccCC----
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS--SISSCVSSPALDVVAV-GCSDGKIHVHNVRYDEELVTFTHSMR---- 224 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~i~~~~~sp~~~~la~-g~~dg~i~iwd~~~~~~~~~~~~~~~---- 224 (764)
+.+++++.++.|.+||..+++.+..+..... .+..++|+|+++++++ +..++.|.+||+.+++.+..+...+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4688999999999999999999988874332 5789999999987655 45578999999999998887775321
Q ss_pred CCEEEEEEeeCCCCEEEEEe------------CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcE
Q 004270 225 GAVTALAFSSDGQPLLASGA------------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i 292 (764)
..+.+++|+|+|+ .++++. .++.|.+||+.+++....+. ....+.+++|+|++++|+++ ++.|
T Consensus 82 ~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe--CCeE
Confidence 2577899999998 666664 57999999999998887776 34568899999999988887 6889
Q ss_pred EEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE--EEEeecccccccccchhhhHHHhhccchhhh
Q 004270 293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR--LFSVIQDQQSRELSQRHVAKRARKLKMKEEE 370 (764)
Q Consensus 293 ~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (764)
.+||+... ........+.. ...+.|+|+++.++..+..+... +|..........
T Consensus 157 ~~~d~~~~----~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------- 212 (337)
T 1pby_B 157 HVMDPEAG----TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA------------------- 212 (337)
T ss_dssp EEEETTTT----EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT-------------------
T ss_pred EEEECCCC----cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccc-------------------
Confidence 99988755 34443333321 11237788888776655444332 222110000000
Q ss_pred hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270 371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 450 (764)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i 450 (764)
. +. .....|.+
T Consensus 213 ------------------------------------------------------~--------~~-------~~~~~v~~ 223 (337)
T 1pby_B 213 ------------------------------------------------------D--------PT-------AYRTGLLT 223 (337)
T ss_dssp ------------------------------------------------------S--------GG-------GEEEEEEE
T ss_pred ------------------------------------------------------c--------cc-------ccccceEE
Confidence 0 00 00115777
Q ss_pred EECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEE
Q 004270 451 FNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530 (764)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l 530 (764)
||+.+++.. ... ...+...+.+++|+|++++++++ ++.|.+||+.+++.+..+.....+.+++|+|++++|
T Consensus 224 ~d~~~~~~~-~~~------~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 224 MDLETGEMA-MRE------VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTV 294 (337)
T ss_dssp EETTTCCEE-EEE------EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEE
T ss_pred EeCCCCCce-Eee------cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEE
Confidence 777776654 221 12456678899999999999888 799999999999998888888888999999999999
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeecCC
Q 004270 531 ATVADDLVIRLFDVVALRMVRKFEGHT 557 (764)
Q Consensus 531 a~~~~d~~i~v~d~~~~~~~~~~~~h~ 557 (764)
++++.++.|++||+.+++.+..+..+.
T Consensus 295 ~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 999999999999999999988887553
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=3.3e-22 Score=206.90 Aligned_cols=280 Identities=10% Similarity=0.057 Sum_probs=217.0
Q ss_pred cccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE-eCCCcE
Q 004270 267 HDNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA-GQDRAF 338 (764)
Q Consensus 267 h~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i 338 (764)
....+..++|+|+++.+++++. ++.|.+||..+. +.+.... ....+..++|+|+|++++.+ ..++.|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL----EVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC----CEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC----eEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEE
Confidence 5567889999999998888774 457999977654 3333332 23457899999999966554 557899
Q ss_pred EEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeec
Q 004270 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (764)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 418 (764)
.+||..+++....+.... ...
T Consensus 114 ~~~d~~~~~~~~~~~~~~-----------------------------------------------------------~~~ 134 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDD-----------------------------------------------------------RKR 134 (353)
T ss_dssp EEEETTTCCEEEEEESCC-----------------------------------------------------------CCC
T ss_pred EEEeCCCCeeEEEEecCC-----------------------------------------------------------Ccc
Confidence 999987665433321100 000
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270 419 PCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (764)
Q Consensus 419 ~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (764)
+.......+..++++|+|++++++. .++.|.+||..+++....+. .+...+.+++|+|+++++++++.++
T Consensus 135 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~ 206 (353)
T 3vgz_A 135 TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--------NTGKMSTGLALDSEGKRLYTTNADG 206 (353)
T ss_dssp CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--------CCCTTCCCCEEETTTTEEEEECTTS
T ss_pred ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--------CCCCccceEEECCCCCEEEEEcCCC
Confidence 0001113478899999999888876 47899999999988877663 3555678899999999999999999
Q ss_pred eEEEEECCCCCeeeeEec-----CcceEEEEEeecCCEEEEEeC-CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc
Q 004270 497 DIKVWDFKGRDLKSRWEV-----GCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~ 570 (764)
.|.+||..+++....+.. ...+..++|+|+++++++++. ++.|.+||..+++.+..+..+.. ..++|+|||+
T Consensus 207 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~ 284 (353)
T 3vgz_A 207 ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARN 284 (353)
T ss_dssp EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTT
T ss_pred eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCC
Confidence 999999999998888775 245778999999998777765 49999999999999888875442 6799999999
Q ss_pred EEEEEe-CCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270 571 WLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 571 ~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
+++.++ .++.|.+||+.+++.+..+.....+.+++|+|||++|++++.++
T Consensus 285 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 285 EAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 666555 78999999999999999998888899999999999888887764
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.2e-22 Score=208.76 Aligned_cols=298 Identities=9% Similarity=0.037 Sum_probs=215.8
Q ss_pred CEEEEEEcCCeEEEEEccCCceEEEEeccCCC-CEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc----c
Q 004270 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG-AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----D 268 (764)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h----~ 268 (764)
+++++++.++.|.+||+.+++.+..+..++.. .+..++|+|+|+.+++++..++.|.+||+.+++.+..+..++ .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 47899999999999999999998888765322 488999999998556677778999999999998887776333 2
Q ss_pred cCeeEEEEecCCCEEEEEc------------CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 269 NAIISLHFFANEPVLMSAS------------ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 269 ~~v~~l~~~~~~~~l~s~~------------~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
..+..++|+|+++++++++ .++.|.+||+... +....... ...+.+++|+|++++++++ ++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----SRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----EEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC----cEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 3688999999999888886 5799999988654 34444333 4568889999999988887 67
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
.+.+||+.+++....+...
T Consensus 155 ~i~~~d~~~~~~~~~~~~~------------------------------------------------------------- 173 (337)
T 1pby_B 155 DLHVMDPEAGTLVEDKPIQ------------------------------------------------------------- 173 (337)
T ss_dssp SEEEEETTTTEEEEEECST-------------------------------------------------------------
T ss_pred eEEEEECCCCcEeeeeecc-------------------------------------------------------------
Confidence 8999998765433222110
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE--EEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIE--RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~--i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 494 (764)
.... .+.++|+|+.+++....+... +|... ....+..... ..
T Consensus 174 -----~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~-~~ 217 (337)
T 1pby_B 174 -----SWEA---ETYAQPDVLAVWNQHESSGVMATPFYTA---------------------------RKDIDPADPT-AY 217 (337)
T ss_dssp -----TTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEE---------------------------BTTSCTTSGG-GE
T ss_pred -----ccCC---CceeCCCccEEeeeccCCCceeeeeecc---------------------------cccccccccc-cc
Confidence 0001 115677777666554433221 11111 0000000000 11
Q ss_pred CCeEEEEECCCCCeeeeEe---cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE
Q 004270 495 HGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571 (764)
Q Consensus 495 dg~v~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~ 571 (764)
...|.+||..+++.. .+. ....+..++|+|++++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|||++
T Consensus 218 ~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 218 RTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCE
T ss_pred ccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCE
Confidence 126899999988775 332 22567889999999999988 799999999999988887744 46789999999999
Q ss_pred EEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270 572 LLSSGMDGSLRIWDVILARQIDAIHVDV 599 (764)
Q Consensus 572 l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 599 (764)
|++++.++.|++||+.+++.+..+..+.
T Consensus 294 l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 9999999999999999999998887653
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.4e-22 Score=203.91 Aligned_cols=253 Identities=9% Similarity=-0.005 Sum_probs=192.4
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC-CCCCceeeEeccCC-CCCCeeE
Q 004270 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-TDGDPRLLRFRSGH-SAPPLCI 320 (764)
Q Consensus 243 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~~~~~h-~~~v~~i 320 (764)
++.++.|++||+.+++..... .|...|.+++|+|++++|++++ ++.|.+|+++. . .......+| ...+.++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~ 90 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP----SPEKVDTGFATICNNDH 90 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC----SCEECCCTTCCCBCSCC
T ss_pred CCcceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC----CceEeccccccccccce
Confidence 457899999999998877544 4889999999999999999987 78999999876 4 233333444 4678899
Q ss_pred EEecCCCEEEEEe--CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270 321 RFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (764)
Q Consensus 321 ~~~~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (764)
+|+|++++|++++ .++...+|.+...
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~---------------------------------------------------- 118 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPST---------------------------------------------------- 118 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETT----------------------------------------------------
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECC----------------------------------------------------
Confidence 9999999999988 3355666654311
Q ss_pred CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE
Q 004270 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
++.. ..+ .+...+.
T Consensus 119 --------------------------------------------------------~~~~-~~~---------~~~~~~~ 132 (297)
T 2ojh_A 119 --------------------------------------------------------GGTP-RLM---------TKNLPSY 132 (297)
T ss_dssp --------------------------------------------------------CCCC-EEC---------CSSSSEE
T ss_pred --------------------------------------------------------CCce-EEe---------ecCCCcc
Confidence 1110 001 1222377
Q ss_pred EEEECCCCCEEE-EEeCCCeEEEEEC--CCCCeeeeEecCcceEEEEEeecCCEEEEEe-CCCeEEEEEcc-CCeEEEEe
Q 004270 479 GVACDSTNTLMI-SAGYHGDIKVWDF--KGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVV-ALRMVRKF 553 (764)
Q Consensus 479 ~l~~~~~~~~l~-s~~~dg~v~iwd~--~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~-~~~~~~~~ 553 (764)
.++|+|+++.++ +++.++.+++|++ .+++......+...+.+++|+|+++++++++ .++.+++|++. .+..+..+
T Consensus 133 ~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 133 WHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred ceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 788999998777 6778888888885 4455544445557899999999999888776 58999999986 56677888
Q ss_pred ecCCCCeeEEEEcCCCcEEEEEeCC-----------CcEEEEEcCccceEEEE--ee-CCceEEEEEcCCCCeEEEEEeC
Q 004270 554 EGHTDRITDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAI--HV-DVSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 554 ~~h~~~i~~l~~s~dg~~l~s~s~d-----------g~i~iwd~~~~~~~~~~--~~-~~~v~~l~~sp~g~~lat~~~d 619 (764)
..|...+..++|+|||++|++++.+ +.|++||+.+++..... .. ...+.+++|+|+|++|++++.+
T Consensus 213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 8888889999999999999988765 56999999988764433 23 3469999999999999999887
Q ss_pred C
Q 004270 620 Q 620 (764)
Q Consensus 620 ~ 620 (764)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 5
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=8.5e-23 Score=232.71 Aligned_cols=369 Identities=10% Similarity=-0.005 Sum_probs=246.1
Q ss_pred cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC---CeEEEEEcCCCCEEEEEEc---------CCeEEEE
Q 004270 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS---SISSCVSSPALDVVAVGCS---------DGKIHVH 208 (764)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~---~i~~~~~sp~~~~la~g~~---------dg~i~iw 208 (764)
....|+|++ + ++..+.++.|++||+.+++....+.+|.. .+.+++|||||++|++++. ++.|++|
T Consensus 19 ~~~~~s~dg--~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 19 FFPNWISGQ--E-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCCEESSSS--E-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CccEECCCC--e-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 467899998 4 44455799999999999998887776543 4899999999999999876 6899999
Q ss_pred EccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe-----------------
Q 004270 209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI----------------- 271 (764)
Q Consensus 209 d~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v----------------- 271 (764)
|+.+++.+..... ...+.+++|||||+ .|+.+. ++.|++||+.+++.......++...|
T Consensus 96 d~~~g~~~~~~~l--~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 96 DLSNGEFVRGNEL--PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp ETTTTEECCSSCC--CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred ECCCCccccceec--CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 9998876211111 24688999999999 666665 78999999998876554433433322
Q ss_pred eEEEEecCCCEEEEEcCC-CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc-
Q 004270 272 ISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS- 349 (764)
Q Consensus 272 ~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~- 349 (764)
.+++|+|||+.|++++.| +.+.+|.+..... .+...+..+.|...|.. .....+++||+.++...
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~yp~~g~~----~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD---------EQYPRTINIPYPKAGAK----NPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCS---------SSSCEEEEEECCBTTSC----CCEEEEEEEESSCHHHHC
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCC---------CCCccceeecCCCCCCC----CCeeEEEEEECCCCCccc
Confidence 489999999999988765 5566665533211 12233444555444321 12346788887654321
Q ss_pred -ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270 350 -RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 428 (764)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~ 428 (764)
..+... .....+...+.
T Consensus 239 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~ 256 (719)
T 1z68_A 239 PQEVPVP--------------------------------------------------------------AMIASSDYYFS 256 (719)
T ss_dssp CEECCCC--------------------------------------------------------------HHHHTSCEEEE
T ss_pred eeEccCC--------------------------------------------------------------ccCCCCcceEE
Confidence 000000 00012346788
Q ss_pred EEEEccCCCEEEEEecCC----cEEEEE----CcCCcccceecCccccccccccCcEE-----EEEECCCCCEEEE--Ee
Q 004270 429 ACTISACGNFAVLGTAGG----WIERFN----LQSGISRGSYLDMSERSNYAHNGEVV-----GVACDSTNTLMIS--AG 493 (764)
Q Consensus 429 ~~~~s~~g~~l~~g~~~g----~i~i~~----~~~~~~~~~~~~~~~~~~~~h~~~v~-----~l~~~~~~~~l~s--~~ 493 (764)
.++|+||++++++....+ .|.+|| ..++.....+.. ....|...+. .++|+|+|+.++. +.
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH----IEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE----EEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec----ccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 999999988777754432 488899 777765544310 0014555565 7899999986654 44
Q ss_pred CCC--eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC-----CeEEEEEccC--Ce-EEEEee----cCCCC
Q 004270 494 YHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-----LVIRLFDVVA--LR-MVRKFE----GHTDR 559 (764)
Q Consensus 494 ~dg--~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-----~~i~v~d~~~--~~-~~~~~~----~h~~~ 559 (764)
.+| .|.+||+.+++..........+..+.++ +++.++..+.+ +..++|.+.. +. ....+. +|...
T Consensus 333 ~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~ 411 (719)
T 1z68_A 333 KDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQ 411 (719)
T ss_dssp TTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBC
T ss_pred cCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCc
Confidence 555 5777787777643333334567777777 88888777665 7888888764 32 234443 26667
Q ss_pred eeEEEEcCCCcEEEE-EeCC--CcEEEEEcCccceEEEEe
Q 004270 560 ITDFCFSEDGKWLLS-SGMD--GSLRIWDVILARQIDAIH 596 (764)
Q Consensus 560 i~~l~~s~dg~~l~s-~s~d--g~i~iwd~~~~~~~~~~~ 596 (764)
+..+.|+|||++++. ++.+ ..+.+||+.+++.+..+.
T Consensus 412 ~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 412 YYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp BEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 889999999988774 3333 478999998888665554
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=2.1e-22 Score=202.50 Aligned_cols=256 Identities=14% Similarity=0.191 Sum_probs=192.2
Q ss_pred EEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC-ceeeeeeecccccCeeEEEEe
Q 004270 199 GCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFF 277 (764)
Q Consensus 199 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~h~~~v~~l~~~ 277 (764)
++.++.|++||+.+++...... + ...|.+++|+|+|+ +|++++ ++.|++||+.+ ++........+...+.+++|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~-~-~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQ-T-PELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEE-E-SSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCcceeEEEEeCCCCceeeecc-C-CcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 4568999999999888765443 3 67899999999999 777776 78999999999 877666652234788999999
Q ss_pred cCCCEEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE-EEeCCCcEEEEEeecccccccccc
Q 004270 278 ANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQ 354 (764)
Q Consensus 278 ~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~ 354 (764)
|++++|++++ .++..++|.++...+.. ..+..+ ..+..++|+|++++|+ +++.++.+++|++....
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~------- 162 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTP---RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS------- 162 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCC---EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT-------
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCce---EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC-------
Confidence 9999999998 45678888887654432 222223 3488889999998877 67778888888764211
Q ss_pred hhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc
Q 004270 355 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA 434 (764)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 434 (764)
T Consensus 163 -------------------------------------------------------------------------------- 162 (297)
T 2ojh_A 163 -------------------------------------------------------------------------------- 162 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECC-CCCeeeeE
Q 004270 435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK-GRDLKSRW 512 (764)
Q Consensus 435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~-~~~~~~~~ 512 (764)
+.. ..+ ..|...+.+++|+|+++.++.++ .++.+++|++. .+.....+
T Consensus 163 ---------------------~~~-~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 163 ---------------------GVE-TRL--------THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp ---------------------CCE-EEC--------CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred ---------------------Ccc-eEc--------ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 000 000 14566788889999998777666 58888888875 34444444
Q ss_pred e-cCcceEEEEEeecCCEEEEEeCC-----------CeEEEEEccCCeE--EEEeecCCCCeeEEEEcCCCcEEEEEeCC
Q 004270 513 E-VGCSLVKIVYHRVNGLLATVADD-----------LVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD 578 (764)
Q Consensus 513 ~-~~~~i~~~~~s~~~~~la~~~~d-----------~~i~v~d~~~~~~--~~~~~~h~~~i~~l~~s~dg~~l~s~s~d 578 (764)
. +...+..++|+|++++|++++.+ +.|++||+.+++. +..+.+|...+..++|+|||++|++++.|
T Consensus 213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 3 34678899999999999988765 5699999998865 44555888999999999999999988765
Q ss_pred C
Q 004270 579 G 579 (764)
Q Consensus 579 g 579 (764)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 3
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=2.2e-21 Score=200.25 Aligned_cols=303 Identities=11% Similarity=0.069 Sum_probs=208.5
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 004270 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE 265 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 265 (764)
.+++++++.++++++.++.|.+||+.+++.+..+..+....+..++|+|+|+.+++++..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 35678888999999999999999999999888887653236789999999984556666789999999999988877763
Q ss_pred cc-----ccCeeEEEEecCCCEEEEEcCC------------CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 266 AH-----DNAIISLHFFANEPVLMSASAD------------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 266 ~h-----~~~v~~l~~~~~~~~l~s~~~d------------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
.+ ...+..++|+|++++|++++.+ +.|.+||+...... ..+.... +...+.+++|+|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-KPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-CCSEEEE-CCSSCCCEEECTTSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-ceeeecc-CCCcccceeECCCCc-
Confidence 33 3348899999999999998865 89999998763211 2222222 334688999999999
Q ss_pred EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEcc
Q 004270 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (764)
Q Consensus 329 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (764)
+++++. .+.+||+.+++....+....... ....++ + .+.+|...
T Consensus 161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~----------~~~~~~------------~------------~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNR----------KGYSAP------------D------------VLYFWPHQ 204 (349)
T ss_dssp EEEESS--SEEEECTTTCCEEEEECSTTCCC----------TTBCCC------------B------------CCCCCCCC
T ss_pred EEEccC--cEEEEeCCCCceeccccccccCC----------ccccCc------------c------------ceeeecCC
Confidence 666543 49999987765444332110000 000000 0 00000000
Q ss_pred ceeecceeecCCCCCCCCeEEEEEccCCC-----------EEEEEecCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270 409 NFVLGEHILRPCPENPTAVKACTISACGN-----------FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (764)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-----------~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (764)
.. .........+++++++. ++.....++.+.+++.. .+...+
T Consensus 205 ~~----------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 257 (349)
T 1jmx_B 205 SP----------RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-----------------DLTELY 257 (349)
T ss_dssp CT----------TCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-----------------ECSSCE
T ss_pred Cc----------ceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-----------------cCCCcc
Confidence 00 00001233455554432 12233334444444432 345678
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 004270 478 VGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (764)
Q Consensus 478 ~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h 556 (764)
.+++++| ++++++++ ++.|.+||+.+++.+..+.....+.+++|+|++++|++++.++.|++||..+++.+..+..+
T Consensus 258 ~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 8999999 99999888 89999999999999888888778889999999999998888999999999999998888754
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.3e-20 Score=195.34 Aligned_cols=310 Identities=15% Similarity=0.112 Sum_probs=208.0
Q ss_pred EEEEEe----CCCcEEEEEC--CCceeeeeeecccccCeeEEEEecCCCEEEEEcCC----CcEEEEEecCCCCCceeeE
Q 004270 239 LLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD----NSIKMWIFDTTDGDPRLLR 308 (764)
Q Consensus 239 ~l~sg~----~dg~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----~~i~vw~~~~~~~~~~~~~ 308 (764)
.+++|+ .++.|.+|++ .+++....... +...+..++|+|++++|++++.+ +.+.+|+++...+..+.+.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 566664 3567888866 55665544442 67788899999999999998876 7999999987655445555
Q ss_pred eccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270 309 FRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (764)
Q Consensus 309 ~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (764)
....+...+..+++ +++++++++ .++.+.+|++........+...
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-------------------------------- 139 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV-------------------------------- 139 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE--------------------------------
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee--------------------------------
Confidence 55556667777887 888887776 5789999998754332221100
Q ss_pred cccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcc------cc
Q 004270 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGIS------RG 460 (764)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~------~~ 460 (764)
.... .....+.......+.+++++|+|++++++. .++.|.+|++..... ..
T Consensus 140 -----------------~~~~-----g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 140 -----------------IEFK-----GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp -----------------EECC-----CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred -----------------EEcc-----CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 0000 000001112235678899999999776665 478999998875442 11
Q ss_pred eecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeee--EecC----cceEEEEEeecCCEEEEE
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR--WEVG----CSLVKIVYHRVNGLLATV 533 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~--~~~~----~~i~~~~~s~~~~~la~~ 533 (764)
.... .......+...+..++|+|+|+++++++ .++.|.+|++.+++.... +... .....++|+|||++|+++
T Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 198 TKGT-PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp EEEE-EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred eccc-ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence 0000 0000024455678999999999887777 689999999987754322 2211 346799999999998777
Q ss_pred eCC--CeEEEEEcc--CCe--EEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEE--cCccceEEEEe--eCCceE
Q 004270 534 ADD--LVIRLFDVV--ALR--MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWD--VILARQIDAIH--VDVSIT 602 (764)
Q Consensus 534 ~~d--~~i~v~d~~--~~~--~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd--~~~~~~~~~~~--~~~~v~ 602 (764)
..+ +.|.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|+ ..+|++..... .-..+.
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 654 899999995 444 4555554 55788999999999998887 678999964 45676654321 122488
Q ss_pred EEEEc
Q 004270 603 ALSLS 607 (764)
Q Consensus 603 ~l~~s 607 (764)
|+.|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88885
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=228.13 Aligned_cols=356 Identities=10% Similarity=-0.007 Sum_probs=234.9
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC---CEEEEEEeeCCCCEEEEEeC---------CCcEEEEE
Q 004270 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG---AVTALAFSSDGQPLLASGAS---------SGVISIWN 253 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~l~fs~d~~~~l~sg~~---------dg~i~iwd 253 (764)
.++|+|+++++++ +.|+.|++||+.+++....+..+ .. .+.+++|||||+ .|++++. ++.|++||
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNR-TMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHH-HHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccc-cccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEE
Confidence 6799999965554 46899999999999877666543 22 489999999999 7777765 68999999
Q ss_pred CCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC-----------------C
Q 004270 254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA-----------------P 316 (764)
Q Consensus 254 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~-----------------~ 316 (764)
+.+++.+.... ....+..++|+|||+.|+++. ++.|++|++..... ..+ ...++.. .
T Consensus 97 ~~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~--~~l-~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 97 LSNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP--FQI-TFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp TTTTEECCSSC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC--EEC-CCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred CCCCcccccee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc--EEE-ecCCCcCCeEcccccceeeeecccC
Confidence 99998732111 125688999999999999886 78999998765431 111 1122222 2
Q ss_pred CeeEEEecCCCEEEEEeCC-CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270 317 PLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (764)
Q Consensus 317 v~~i~~~~~~~~l~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (764)
..+++|+|||++|++++.| +.+.+|.+......
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~---------------------------------------------- 204 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE---------------------------------------------- 204 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS----------------------------------------------
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCC----------------------------------------------
Confidence 2589999999999998765 45566654321100
Q ss_pred eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccC
Q 004270 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (764)
Q Consensus 396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (764)
.......+.+...|.. .....|.+||+.++...............+|..
T Consensus 205 ---------------------------~~~~~~~~~yp~~g~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 205 ---------------------------QYPRTINIPYPKAGAK----NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp ---------------------------SSCEEEEEECCBTTSC----CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred ---------------------------CCccceeecCCCCCCC----CCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 0012222333222220 122378899998876531111000011136888
Q ss_pred cEEEEEECCCCCEEEEEeCC----CeEEEEE----CCCCCeeeeEe----c-CcceE-----EEEEeecCCEEEE--EeC
Q 004270 476 EVVGVACDSTNTLMISAGYH----GDIKVWD----FKGRDLKSRWE----V-GCSLV-----KIVYHRVNGLLAT--VAD 535 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~~d----g~v~iwd----~~~~~~~~~~~----~-~~~i~-----~~~~s~~~~~la~--~~~ 535 (764)
.+..++|+||++++++.... ..|.+|| ..+++....+. . ...+. .+.|+|||+.++. ...
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 89999999998877764432 3488899 77777665552 2 24455 7899999996655 334
Q ss_pred CC--eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC-----CcEEEEEcCc--cc-eEEEEee----C-Cc
Q 004270 536 DL--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-----GSLRIWDVIL--AR-QIDAIHV----D-VS 600 (764)
Q Consensus 536 d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-----g~i~iwd~~~--~~-~~~~~~~----~-~~ 600 (764)
++ .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|.+.. +. ....+.. + ..
T Consensus 334 ~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~ 411 (719)
T 1z68_A 334 DGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQ 411 (719)
T ss_dssp TSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBC
T ss_pred CCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCc
Confidence 55 57777877766 45666666778888888 88887766654 7889998764 42 1233331 2 34
Q ss_pred eEEEEEcCCCCeEEEEEeCC--CeEEEEecc
Q 004270 601 ITALSLSPNMDVLATAHVDQ--NGVYLWVNR 629 (764)
Q Consensus 601 v~~l~~sp~g~~lat~~~d~--~~i~lW~~~ 629 (764)
+..+.|+|||++++..+.+. ..+++|+..
T Consensus 412 ~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 412 YYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp BEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred eEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 78899999999888654322 357888763
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=3.2e-20 Score=192.47 Aligned_cols=281 Identities=14% Similarity=0.143 Sum_probs=195.4
Q ss_pred CEEEEE----cCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC----CcEEEEEeecc-ccccc
Q 004270 281 PVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQD-QQSRE 351 (764)
Q Consensus 281 ~~l~s~----~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----g~i~i~d~~~~-~~~~~ 351 (764)
.+++.| +.++.|.+|.++...+....+... +...+..++|+|||++|++++.+ +.+.+|++... .....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 345555 346789999998876665555554 77888999999999999999886 78999998653 11111
Q ss_pred ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (764)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (764)
+.. ...+......++
T Consensus 92 ~~~-----------------------------------------------------------------~~~~~~~p~~~~ 106 (361)
T 3scy_A 92 LNT-----------------------------------------------------------------QKTMGADPCYLT 106 (361)
T ss_dssp EEE-----------------------------------------------------------------EECSSSCEEEEE
T ss_pred eeE-----------------------------------------------------------------eccCCCCcEEEE
Confidence 000 001124556667
Q ss_pred EccCCCEEEEEe-cCCcEEEEECcCCcccceecC------ccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEEC
Q 004270 432 ISACGNFAVLGT-AGGWIERFNLQSGISRGSYLD------MSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDF 503 (764)
Q Consensus 432 ~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~ 503 (764)
+ +|++++++. .++.+.+|++........... ........+...+.+++|+|+|+++++++ .++.|++|++
T Consensus 107 ~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 107 T--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp E--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred E--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 6 888777766 578999999975443322210 00000112344578899999999776655 5889999998
Q ss_pred CCCC-------e-------eeeEecCcceEEEEEeecCCEEEEEe-CCCeEEEEEccCCeE--EEEee---cCCCCeeEE
Q 004270 504 KGRD-------L-------KSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRM--VRKFE---GHTDRITDF 563 (764)
Q Consensus 504 ~~~~-------~-------~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~--~~~~~---~h~~~i~~l 563 (764)
.... + .........+..++|+|||+++++++ .++.|.+||+.+++. +..+. .+......+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i 264 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI 264 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence 7543 2 11223346778999999999888877 689999999997754 33332 334557899
Q ss_pred EEcCCCcEEEEEeC--CCcEEEEEcC--ccc--eEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 564 CFSEDGKWLLSSGM--DGSLRIWDVI--LAR--QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 564 ~~s~dg~~l~s~s~--dg~i~iwd~~--~~~--~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
+|+|||++|+++.. ++.|.+|++. +++ .+..+.....+.+++|+|||++|++++.+...|.+|+++.
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 99999999976665 4899999995 455 4455555446899999999999999986655799987753
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.89 E-value=9.5e-21 Score=215.54 Aligned_cols=369 Identities=8% Similarity=0.035 Sum_probs=245.2
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-----eEEEEEcCCCCEEEEEEcC---------CeE
Q 004270 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-----ISSCVSSPALDVVAVGCSD---------GKI 205 (764)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-----i~~~~~sp~~~~la~g~~d---------g~i 205 (764)
...+.|+|++ +.++++ +|+|++||+.+++....+.+|... ...++|||||++|+.++.+ +.+
T Consensus 19 ~~~~~w~~dg--~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 19 LYSLRWISDH--EYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCEEECSSS--EEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccEECCCC--cEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 4467899999 667765 899999999999998888887643 2347899999999998876 567
Q ss_pred EEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe--------------
Q 004270 206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-------------- 271 (764)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v-------------- 271 (764)
.+||+.+++... +.. +.+.+...+|||||+ .||.+. ++.|++||+.+++.......++...+
T Consensus 95 ~~~d~~~~~~~~-l~~-~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQLIT-EER-IPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTEECC-SSC-CCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCcEEE-ccc-CCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999987543 333 357899999999999 666664 68999999988875543332333222
Q ss_pred ---eEEEEecCCCEEEEEcCCCc-EEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec--
Q 004270 272 ---ISLHFFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ-- 345 (764)
Q Consensus 272 ---~~l~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~-- 345 (764)
..+.|+|||+.|+.++.|.+ +++|++....... ++...+..+.|...|.. .....|++||+.+
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLS 239 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCCCcCc----CCeeEEEEEECCCCC
Confidence 35899999999998876654 8888775432210 24444556666665532 1122578888765
Q ss_pred -ccc--cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCC
Q 004270 346 -DQQ--SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (764)
Q Consensus 346 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (764)
+.. ...+..... ..+
T Consensus 240 ~~~~~~~~~l~~~~~--------------------------------------------------------------~~~ 257 (740)
T 4a5s_A 240 SVTNATSIQITAPAS--------------------------------------------------------------MLI 257 (740)
T ss_dssp SSSCCCEEEECCCHH--------------------------------------------------------------HHT
T ss_pred CCCcceEEEecCCcc--------------------------------------------------------------CCC
Confidence 421 111100000 002
Q ss_pred CCCCeEEEEEccCCCEEEEEecC----CcEEEEECcCCc----cc--ceecCccccccccccCcEE-----EEEECCCCC
Q 004270 423 NPTAVKACTISACGNFAVLGTAG----GWIERFNLQSGI----SR--GSYLDMSERSNYAHNGEVV-----GVACDSTNT 487 (764)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~~----g~i~i~~~~~~~----~~--~~~~~~~~~~~~~h~~~v~-----~l~~~~~~~ 487 (764)
+...+..++|+|||+.++..... ..|.+||+.++. .. ..+. ...|...|. .++|+|||+
T Consensus 258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~------~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI------EMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE------EECSSSCSSSSSCCCCEECTTSS
T ss_pred CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee------eccCCceEccCcCCCceEcCCCC
Confidence 34668899999999977765443 379999999887 11 1110 013444443 688999999
Q ss_pred EEE-EEeC-C--CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC-----C--eEEEEEccCCeEEEEeec-
Q 004270 488 LMI-SAGY-H--GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-----L--VIRLFDVVALRMVRKFEG- 555 (764)
Q Consensus 488 ~l~-s~~~-d--g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-----~--~i~v~d~~~~~~~~~~~~- 555 (764)
.++ ..+. + ..|.+||..+++..........+..+. .+|++.++..+.. + .|+..++..++....+..
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~ 410 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCE 410 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTT
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccc
Confidence 877 6653 3 468889998877666555555665544 3557766655543 3 455555555544334542
Q ss_pred ---CCCCeeEEEEcCCCcEEEEEeCC---CcEEEEEcCccceEEEEe
Q 004270 556 ---HTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIH 596 (764)
Q Consensus 556 ---h~~~i~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~ 596 (764)
.......+.|||||++++..... ..+.+++..+++.+..+.
T Consensus 411 ~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 411 LNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp TSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 23568899999999987755433 468888988887666554
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=1e-21 Score=217.77 Aligned_cols=272 Identities=12% Similarity=0.114 Sum_probs=206.2
Q ss_pred ccccCeeEEEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEecCCCEEEEEeC---CCcEEE
Q 004270 266 AHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQ---DRAFRL 340 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~---dg~i~i 340 (764)
.+..+|.+++|+|||+.|++++. ||++++|+++.. ...+ +..|. ..+..++|+|| +.+++++. +...++
T Consensus 19 ~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g----~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 19 LIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG----ETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT----EEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEE
T ss_pred HhccchheeecCCCCCeEEEEEccCCceeEEEEcCC----CcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEE
Confidence 34668999999999999999887 999999998543 3333 33444 68899999999 77777765 455677
Q ss_pred EEeec--ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeec
Q 004270 341 FSVIQ--DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (764)
Q Consensus 341 ~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 418 (764)
|.+.. ......+ .
T Consensus 93 ~~~~~~~~g~~~~l-----------------------------------------------------------------~ 107 (582)
T 3o4h_A 93 FKVNTSRPGEEQRL-----------------------------------------------------------------E 107 (582)
T ss_dssp EEEETTSTTCCEEC-----------------------------------------------------------------T
T ss_pred EEEeccCCCccccc-----------------------------------------------------------------c
Confidence 76543 2111110 0
Q ss_pred CCCCCCCCeEEEEEccCCCE-EEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC--
Q 004270 419 PCPENPTAVKACTISACGNF-AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-- 495 (764)
Q Consensus 419 ~~~~~~~~v~~~~~s~~g~~-l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-- 495 (764)
........+++|+|+. +++...++.+.+||+.++...... .+.. .+++|+|||+++++++.+
T Consensus 108 ----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~---------~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 108 ----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA---------RLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp ----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE---------EESS--CEEEEEEETTEEEEEEEEET
T ss_pred ----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee---------cCCC--ceEEECCCCCEEEEEEEcCC
Confidence 0123446688888864 344445556669999988665443 2222 789999999999988877
Q ss_pred --CeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC--eEEEEEccCCeEEEEeecCCCCeeEEE-------
Q 004270 496 --GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL--VIRLFDVVALRMVRKFEGHTDRITDFC------- 564 (764)
Q Consensus 496 --g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~------- 564 (764)
+.|++||+.+++......+...+..++|||||+.|+++..++ .|++||+.+++.. .+.+|...+..++
T Consensus 173 ~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp TEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred CCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 789999999988775555557789999999999999888888 8999999999888 8888888888888
Q ss_pred -EcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCC--eEEEEecc
Q 004270 565 -FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN--GVYLWVNR 629 (764)
Q Consensus 565 -~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~--~i~lW~~~ 629 (764)
|||||+++++++.|+++++|++ |+... .....+.+++|+ +|+++++++.+.. .+++|+..
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 9999999999999999999999 76655 223458999999 9999999888763 25666654
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=3.1e-20 Score=191.34 Aligned_cols=284 Identities=11% Similarity=0.103 Sum_probs=192.8
Q ss_pred CCcEEEEEC--CCceeeeeeecccccCeeEEEEecCCCEEEEEcC---CCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270 246 SGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (764)
Q Consensus 246 dg~i~iwd~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (764)
++.|.+|++ .+++........+...+..++|+|+++ |++++. ++.|.+|+++.. ..+.+.....+...+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ--TAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT--EEEEEEEEEEESCCCSEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC--cEEEeeeeecCCCCCEEE
Confidence 445666654 456654432225667788999999998 555544 689999998654 224455545678889999
Q ss_pred EEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270 321 RFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (764)
Q Consensus 321 ~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (764)
+|+|+|++|++++ .++.+.+|++........+..
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~--------------------------------------------- 126 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT--------------------------------------------- 126 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE---------------------------------------------
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce---------------------------------------------
Confidence 9999999998888 678999999863221111100
Q ss_pred ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECc-CCcccceecCccccccccccCcEE
Q 004270 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVV 478 (764)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~ 478 (764)
..... .. .........+.+++++|+|++++++..++.|.+|++. ++........ .......+.
T Consensus 127 -----~~~~~----~~--p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-----~~~~g~~p~ 190 (347)
T 3hfq_A 127 -----VQHSG----HG--PRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL-----TMEAGFGPR 190 (347)
T ss_dssp -----EECCC----CC--SSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE-----ECCTTCCEE
T ss_pred -----eecCC----CC--CCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE-----EcCCCCCCc
Confidence 00000 00 0001123568899999999966666678899999998 4433221100 012234678
Q ss_pred EEEECCCCCEEEE-EeCCCeEEEEECCC--CCee--eeEecC-------cceEEEEEeecCCEEE-EEeCCCeEEEEEcc
Q 004270 479 GVACDSTNTLMIS-AGYHGDIKVWDFKG--RDLK--SRWEVG-------CSLVKIVYHRVNGLLA-TVADDLVIRLFDVV 545 (764)
Q Consensus 479 ~l~~~~~~~~l~s-~~~dg~v~iwd~~~--~~~~--~~~~~~-------~~i~~~~~s~~~~~la-~~~~d~~i~v~d~~ 545 (764)
.++|+|+|+++++ ...++.|.+|++.. ++.. ..+... ..+..++|+|||++|+ +...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999996665 45788999999874 4432 222211 3478899999999875 45568999999997
Q ss_pred ---CCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC-CcEEEE--EcCccceEE
Q 004270 546 ---ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIW--DVILARQID 593 (764)
Q Consensus 546 ---~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-g~i~iw--d~~~~~~~~ 593 (764)
+.+.+..+..+...+..++|+|||++|++++.+ +.|.+| |..+|++..
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 335666777777778999999999999888754 899999 556677653
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=7.3e-21 Score=196.36 Aligned_cols=294 Identities=8% Similarity=0.030 Sum_probs=198.3
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEE-EEEcCCCcEEEEEecCCCCCceee
Q 004270 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~ 307 (764)
.+++++++. ++++++.++.|.+||+.+++.+..+..+....+..++|+|+++.+ ++...++.|.+||+.+. +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~----~~~ 78 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC----KNT 78 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT----EEE
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC----cEE
Confidence 356777777 899999999999999999998888773322368899999999865 45567899999988654 333
Q ss_pred EeccC-C-----CCCCeeEEEecCCCEEEEEeCC------------CcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270 308 RFRSG-H-----SAPPLCIRFYANGRHILSAGQD------------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 369 (764)
Q Consensus 308 ~~~~~-h-----~~~v~~i~~~~~~~~l~s~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (764)
..... + ...+..++|+|+|+++++++.+ +.|.+||+.+++....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---------------- 142 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR---------------- 142 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE----------------
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee----------------
Confidence 33332 2 2348899999999999998865 788888876543211110
Q ss_pred hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 004270 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~ 449 (764)
.. .+...+.+++++|+|+ +++++ +.|.
T Consensus 143 ----------------------------------------------~~----~~~~~~~~~~~s~dg~-l~~~~--~~i~ 169 (349)
T 1jmx_B 143 ----------------------------------------------TF----PMPRQVYLMRAADDGS-LYVAG--PDIY 169 (349)
T ss_dssp ----------------------------------------------EE----ECCSSCCCEEECTTSC-EEEES--SSEE
T ss_pred ----------------------------------------------ec----cCCCcccceeECCCCc-EEEcc--CcEE
Confidence 00 0113577889999999 66653 4499
Q ss_pred EEECcCCcccceecCcccccc-------------cc--c-cCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeee-
Q 004270 450 RFNLQSGISRGSYLDMSERSN-------------YA--H-NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR- 511 (764)
Q Consensus 450 i~~~~~~~~~~~~~~~~~~~~-------------~~--h-~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~- 511 (764)
+||+.+++....+........ .. + .....++++++++....... ....+..++..+++....
T Consensus 170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
T 1jmx_B 170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 249 (349)
T ss_dssp EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence 999999887665532100000 00 0 00344566766542211100 011122244444432111
Q ss_pred -EecCcceEEEEEee-cCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc
Q 004270 512 -WEVGCSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589 (764)
Q Consensus 512 -~~~~~~i~~~~~s~-~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~ 589 (764)
-.....+..++++| ++++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.++
T Consensus 250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 250 FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 11345778999999 99999988 889999999999988887743 45789999999999998888999999999999
Q ss_pred ceEEEEeeCC
Q 004270 590 RQIDAIHVDV 599 (764)
Q Consensus 590 ~~~~~~~~~~ 599 (764)
+.+..+..+.
T Consensus 327 ~~~~~~~~~~ 336 (349)
T 1jmx_B 327 EKVKNIKLPG 336 (349)
T ss_dssp EEEEEEECSS
T ss_pred ceeeeeecCC
Confidence 9998887653
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=7.8e-20 Score=188.38 Aligned_cols=288 Identities=9% Similarity=0.070 Sum_probs=186.8
Q ss_pred CEEEEEeC----CCcEEEEeC--CCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEccCCce--EEEE
Q 004270 152 NKVIVGSQ----EGSLQLWNI--STKKKLY-EFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEE--LVTF 219 (764)
Q Consensus 152 ~~l~~~~~----dg~i~iwd~--~~~~~~~-~~~~h~~~i~~~~~sp~~~~la~g~~---dg~i~iwd~~~~~~--~~~~ 219 (764)
+++++|+. ++.|.+|++ .+++... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++. +..+
T Consensus 3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 35666643 345666654 5676543 3334566778899999999 555544 68999999987763 3333
Q ss_pred eccCCCCEEEEEEeeCCCCEEEEEe-CCCcEEEEECCC-c--eeeeeeecc--------cccCeeEEEEecCCCEEEEEc
Q 004270 220 THSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEK-R--RLQSVIREA--------HDNAIISLHFFANEPVLMSAS 287 (764)
Q Consensus 220 ~~~~~~~v~~l~fs~d~~~~l~sg~-~dg~i~iwd~~~-~--~~~~~~~~~--------h~~~v~~l~~~~~~~~l~s~~ 287 (764)
..+ ...+..++|+|||+ +|++++ .++.|.+|++.. + +.+..+... +...+.+++|+|+++++++..
T Consensus 82 ~~~-~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 82 VAP-GTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp EEE-SCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred ecC-CCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 333 56788999999999 666666 789999999963 3 223333211 122488899999999777777
Q ss_pred CCCcEEEEEecCCCCCceeeEeccC-CCCCCeeEEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270 288 ADNSIKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (764)
Q Consensus 288 ~d~~i~vw~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 365 (764)
.++.|.+|+++.. +.......... ....+..++|+|||++++++ ..++.+.+|++...........
T Consensus 160 ~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~----------- 227 (347)
T 3hfq_A 160 GSDKVYVYNVSDA-GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG----------- 227 (347)
T ss_dssp TTTEEEEEEECTT-SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE-----------
T ss_pred CCCEEEEEEECCC-CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee-----------
Confidence 7899999999732 22222222222 23467889999999976664 5678999999864211000000
Q ss_pred chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE-Eec
Q 004270 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTA 444 (764)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~ 444 (764)
. .............+..++|+|+|+++++ ...
T Consensus 228 ----------------------------------------~-------~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 228 ----------------------------------------I-------VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp ----------------------------------------E-------EESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred ----------------------------------------e-------eeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 0 0000000011245889999999998855 456
Q ss_pred CCcEEEEECcCC---cccceecCccccccccccCcEEEEEECCCCCEEEEEeCC-CeEEEEEC--CCCCee
Q 004270 445 GGWIERFNLQSG---ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GDIKVWDF--KGRDLK 509 (764)
Q Consensus 445 ~g~i~i~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g~v~iwd~--~~~~~~ 509 (764)
++.|.+|++... .....+ ..+...+.+++|+|++++|++++.+ +.|.+|++ .++++.
T Consensus 261 ~~~v~v~~~~~~g~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLIQQI--------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTEEEEEEECGGGCEEEEEEE--------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEEEeEEE--------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 899999998732 222222 2455668899999999988888754 89999954 456544
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=7.8e-21 Score=210.56 Aligned_cols=270 Identities=11% Similarity=0.037 Sum_probs=199.5
Q ss_pred CCCEEEEEEeeCCCCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC---CCcEEEEEecC
Q 004270 224 RGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDT 299 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~i~vw~~~~ 299 (764)
..+|.+++|+|||+ .||.++. +|++.||++.+++...... .+...+..++|+|| +++++++. +...++|.++.
T Consensus 21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETVKLNR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEEECCS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcEeeec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 45799999999999 7777665 9999999997766544433 34468999999999 77777765 56678888776
Q ss_pred --CCCCceeeEeccCCCCCCeeEEEecCCCE-EEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270 300 --TDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (764)
Q Consensus 300 --~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (764)
.... .. +. ....+...+|+|+|+. +++.+.++.+.+||+.+++......
T Consensus 98 ~~~g~~-~~---l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----------------------- 149 (582)
T 3o4h_A 98 SRPGEE-QR---LE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----------------------- 149 (582)
T ss_dssp TSTTCC-EE---CT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------------------
T ss_pred cCCCcc-cc---cc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------------------
Confidence 3222 21 11 2223446788888753 3344444556699987653221100
Q ss_pred eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC----CcEEEEE
Q 004270 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----GWIERFN 452 (764)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~----g~i~i~~ 452 (764)
+.. .++++||||++++.++.+ +.|++||
T Consensus 150 ----------------------------------------------~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 150 ----------------------------------------------LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp ----------------------------------------------ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred ----------------------------------------------CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 001 678999999999988777 7899999
Q ss_pred CcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC--eEEEEECCCCCeeeeEecC-cceEEEE-------
Q 004270 453 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--DIKVWDFKGRDLKSRWEVG-CSLVKIV------- 522 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~-~~i~~~~------- 522 (764)
+.++.... + ..|.+.+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ..+..++
T Consensus 182 ~~~g~~~~-l--------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 182 LSSGGLRV-F--------DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp TTTCCCEE-E--------CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred CCCCCceE-e--------ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 99887653 3 27888899999999999999888888 8999999998877 44433 4455556
Q ss_pred -EeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCc---EEEEEcCc
Q 004270 523 -YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS---LRIWDVIL 588 (764)
Q Consensus 523 -~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~---i~iwd~~~ 588 (764)
|+|||.++++++.++.+++|++ ++... .+.+.|.+++|+ ||+++++++.+.+ +.+||..+
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999999999999 66554 345678999999 9999998887754 66777553
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=7.3e-20 Score=208.26 Aligned_cols=360 Identities=12% Similarity=0.050 Sum_probs=231.6
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCC----CEEEEEEeeCCCCEEEEEeCC---------Cc
Q 004270 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG----AVTALAFSSDGQPLLASGASS---------GV 248 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~l~fs~d~~~~l~sg~~d---------g~ 248 (764)
....++.|+|++++++++ ||.|++||+.+++....+..+... ....++|||||+ .|+.++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceE
Confidence 345688999999999886 899999999999987766654222 224488999999 77777654 66
Q ss_pred EEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC-------------
Q 004270 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA------------- 315 (764)
Q Consensus 249 i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~------------- 315 (764)
+.+||+.+++... +. .|.+.+...+|||||+.|+.+. |+.|.+|+..... ...+ ...++..
T Consensus 94 ~~~~d~~~~~~~~-l~-~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~--~~~l-t~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 94 YDIYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP--SYRI-TWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC--CEEC-CSCCBTTTEEESBCCHHHHH
T ss_pred EEEEECCCCcEEE-cc-cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc--eEEE-cCCCCccceecCcccccccc
Confidence 7899999998654 33 5778899999999999999885 6889999876542 1211 1122222
Q ss_pred ----CCeeEEEecCCCEEEEEeCCCc-EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 316 ----PPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 316 ----~v~~i~~~~~~~~l~s~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
....+.|+|||+.|+.++.|.+ +.+|++.......
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~---------------------------------------- 207 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES---------------------------------------- 207 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT----------------------------------------
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC----------------------------------------
Confidence 2245899999999998876544 8888764321100
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcC---Ccc--cceecCc
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS---GIS--RGSYLDM 465 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~---~~~--~~~~~~~ 465 (764)
.+......+.+.+.|.. .....|++||+.+ +.. ...+..
T Consensus 208 -------------------------------~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~- 251 (740)
T 4a5s_A 208 -------------------------------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITA- 251 (740)
T ss_dssp -------------------------------CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECC-
T ss_pred -------------------------------CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecC-
Confidence 01123344444444432 1122688899988 732 122210
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCCC----ee--eeE--e-cCcce-----EEEEEeecC
Q 004270 466 SERSNYAHNGEVVGVACDSTNTLMISAGY----HGDIKVWDFKGRD----LK--SRW--E-VGCSL-----VKIVYHRVN 527 (764)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~----~~--~~~--~-~~~~i-----~~~~~s~~~ 527 (764)
.....+|...+..++|+|||+.++.... +..|++||+.+++ +. ..+ . +...+ ...+|+|||
T Consensus 252 -~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 252 -PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp -CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred -CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 0001137788999999999997665542 3479999999887 22 221 2 22333 378899999
Q ss_pred CEEE-EEeC-C--CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC-----C--cEEEEEcCccceEEEEe
Q 004270 528 GLLA-TVAD-D--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-----G--SLRIWDVILARQIDAIH 596 (764)
Q Consensus 528 ~~la-~~~~-d--~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d-----g--~i~iwd~~~~~~~~~~~ 596 (764)
+.++ ..+. + ..|++||..+++.. .+......|..+.. +|++.|+..+.. + .|+..++..+.....+.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt 408 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS 408 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeec
Confidence 9887 6654 3 46888898877655 44434555666542 446665544432 2 45555555444333343
Q ss_pred eC-----CceEEEEEcCCCCeEEEEEeCC--CeEEEEecc
Q 004270 597 VD-----VSITALSLSPNMDVLATAHVDQ--NGVYLWVNR 629 (764)
Q Consensus 597 ~~-----~~v~~l~~sp~g~~lat~~~d~--~~i~lW~~~ 629 (764)
.. .....++|||+|++++...... ..+++++..
T Consensus 409 ~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 409 CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred cccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 21 3488999999999887766542 135666543
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=7.2e-20 Score=191.96 Aligned_cols=300 Identities=10% Similarity=0.026 Sum_probs=201.2
Q ss_pred EEEECCCceeeeeeecccccCeeE-----EEEecCCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 250 SIWNLEKRRLQSVIREAHDNAIIS-----LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 250 ~iwd~~~~~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
..+|..++.....+. .|...... .+|+|||+.|+.++. ++...+|.++...+ .......++...+..+.|+
T Consensus 13 ~~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 13 TYQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEEC
T ss_pred EEecCCCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEc
Confidence 345777777777776 56555555 789999999998887 77644444443333 3444445666666678899
Q ss_pred cCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 324 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
|||+.|+.++.++.+++||+.+++.......
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~------------------------------------------------- 120 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQV------------------------------------------------- 120 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEEC-------------------------------------------------
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeec-------------------------------------------------
Confidence 9999999999999999999876543221100
Q ss_pred EEEccceeecceeecCCCCCCCCeE--EEEEccCCCEEEEE----------------------ecCCcEEEEECcCCccc
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVK--ACTISACGNFAVLG----------------------TAGGWIERFNLQSGISR 459 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~~l~~g----------------------~~~g~i~i~~~~~~~~~ 459 (764)
+...+. ...++++|++++.. ..++.|.+||+.+++..
T Consensus 121 -------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 121 -------------------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp -------------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred -------------------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 001121 22347777777642 23468999999988654
Q ss_pred ceecCccccccccccCcEEEEEECC-CCCEEEEEeCC------CeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEE
Q 004270 460 GSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH------GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLL 530 (764)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~l 530 (764)
... .+...+..++|+| +|+.|+.+..+ ..|.++|..+++........ ..+...+|+|||+.|
T Consensus 182 ~l~---------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 182 VIL---------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp EEE---------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCE
T ss_pred Eee---------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEE
Confidence 433 5666789999999 99988877753 37888888776654444433 357788999999988
Q ss_pred EEEeC-CC----eEEEEEccCCeE--EEEeecCCC---CeeEEEEcCCCcEEEEE---------eCCCcEEEEEcCccce
Q 004270 531 ATVAD-DL----VIRLFDVVALRM--VRKFEGHTD---RITDFCFSEDGKWLLSS---------GMDGSLRIWDVILARQ 591 (764)
Q Consensus 531 a~~~~-d~----~i~v~d~~~~~~--~~~~~~h~~---~i~~l~~s~dg~~l~s~---------s~dg~i~iwd~~~~~~ 591 (764)
+..+. ++ .|++||+.+++. +..+.++.. ....++|+|||++|+.. ..+..|++||+.+++.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 66543 22 399999998874 333333110 02234799999988854 4567899999998876
Q ss_pred EEEEeeCC-----------ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 592 IDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 592 ~~~~~~~~-----------~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
........ .+.+++|+|||+.|+.++.......||.++
T Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 333 HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 54444433 478899999999999887644346666543
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=5.9e-19 Score=181.60 Aligned_cols=284 Identities=11% Similarity=0.169 Sum_probs=196.1
Q ss_pred CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CCCcEEEEEecCCCCCceeeEeccC--
Q 004270 245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSG-- 312 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~~~~~~~~~-- 312 (764)
.|+.|.+||..+++.+..+. .+..+ .++|+||++++++++ .+++|.+||..+. +.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~----~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL----TFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC----CEEEEEEECT
T ss_pred ccCeEEEEECCCCeEEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC----cEEEEEEcCc
Confidence 36799999999999988887 45444 899999999998886 3677999987654 23333221
Q ss_pred ----CCCCCeeEEEecCCCEEEEEeC--CCcEEEEEeeccccccc-ccchhhhHHHhhccchhhhhccCceeEeeecccc
Q 004270 313 ----HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRE-LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 385 (764)
Q Consensus 313 ----h~~~v~~i~~~~~~~~l~s~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (764)
+...+..++++|||++|+++.. +++|.+||+.+.+.... +..
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~------------------------------- 150 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA------------------------------- 150 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-------------------------------
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-------------------------------
Confidence 3456789999999999998864 57899999877654433 211
Q ss_pred cccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECcC-Ccccceec
Q 004270 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQS-GISRGSYL 463 (764)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~~~~-~~~~~~~~ 463 (764)
.....+.+.|++ ..+++.+.+|.+..++... ++......
T Consensus 151 ---------------------------------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~ 191 (361)
T 2oiz_A 151 ---------------------------------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191 (361)
T ss_dssp ---------------------------------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred ---------------------------------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence 111113344544 4555666667666666643 33221100
Q ss_pred CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCee--eeEecC-----------cceEEEEEeecCCEE
Q 004270 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRWEVG-----------CSLVKIVYHRVNGLL 530 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~-----------~~i~~~~~s~~~~~l 530 (764)
. ......+... ..+.+++++..++..+.++.|.++|+...... ..+... .....++++|+++.+
T Consensus 192 ~--~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l 268 (361)
T 2oiz_A 192 S--KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM 268 (361)
T ss_dssp C--CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred c--cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence 0 0000011111 12333566777777888999999999765422 222110 112237899998888
Q ss_pred EEEeC-----------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc--ceEEEE-e
Q 004270 531 ATVAD-----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQIDAI-H 596 (764)
Q Consensus 531 a~~~~-----------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~--~~~~~~-~ 596 (764)
+++.. .+.|.+||+.+++.+.++..+. +..++|+|||++|++++. ++|.+||..++ +.+..+ .
T Consensus 269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp EEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred EEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 77653 3489999999999999999887 999999999999998886 99999999999 999887 4
Q ss_pred eCCceEEEEEcCCCC
Q 004270 597 VDVSITALSLSPNMD 611 (764)
Q Consensus 597 ~~~~v~~l~~sp~g~ 611 (764)
.......++++|+|.
T Consensus 346 ~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 346 AAEASLQVQFHPVGG 360 (361)
T ss_dssp SCSSEEEEEECCCSC
T ss_pred CCCCcEEEEecCCCC
Confidence 555689999999986
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1.3e-19 Score=189.92 Aligned_cols=301 Identities=9% Similarity=-0.034 Sum_probs=197.6
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEE-----EEEcCCCCEEEEEEc-CC--eEEEEEccCCceEEEEeccCCCCEEEEEEeeC
Q 004270 164 QLWNISTKKKLYEFKGWGSSISS-----CVSSPALDVVAVGCS-DG--KIHVHNVRYDEELVTFTHSMRGAVTALAFSSD 235 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~-----~~~sp~~~~la~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d 235 (764)
..+|..++..+..+..|...... .+|||||++|+.++. +| .|.+||+.+++....... +...+..++|+||
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spd 91 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPD 91 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTT
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCC
Confidence 34577888888889888766666 889999999999887 66 488889988776554433 3444556789999
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEE--EecCCCEEEEE----------------------cCCCc
Q 004270 236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLH--FFANEPVLMSA----------------------SADNS 291 (764)
Q Consensus 236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~l~s~----------------------~~d~~ 291 (764)
|+ .|+.++.++.|++||+.+++...... .+...+.... ++|++..++.. +.+..
T Consensus 92 g~-~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 92 DD-ALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp SS-EEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CC-EEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 99 88888888999999999998766665 4555454444 48899888743 23456
Q ss_pred EEEEEecCCCCCceeeEeccCCCCCCeeEEEec-CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhh
Q 004270 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 370 (764)
Q Consensus 292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (764)
|.+||+.+. ..+ .+..+...+..++|+| ||+.|+....++. +
T Consensus 170 l~~~d~~~g--~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~----~---------------------------- 212 (388)
T 3pe7_A 170 LMRVDLKTG--EST---VILQENQWLGHPIYRPYDDSTVAFCHEGPH----D---------------------------- 212 (388)
T ss_dssp EEEEETTTC--CEE---EEEEESSCEEEEEEETTEEEEEEEEECSCT----T----------------------------
T ss_pred EEEEECCCC--ceE---EeecCCccccccEECCCCCCEEEEEEecCC----C----------------------------
Confidence 777766554 222 2234566788999999 9998887765320 0
Q ss_pred hccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 004270 371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 450 (764)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i 450 (764)
.....|.+
T Consensus 213 ------------------------------------------------------------------------~~~~~l~~ 220 (388)
T 3pe7_A 213 ------------------------------------------------------------------------LVDARMWL 220 (388)
T ss_dssp ------------------------------------------------------------------------TSSCSEEE
T ss_pred ------------------------------------------------------------------------CCcceEEE
Confidence 00012222
Q ss_pred EECcCCcccceecCcccccccccc--CcEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCeeeeEecCc------c
Q 004270 451 FNLQSGISRGSYLDMSERSNYAHN--GEVVGVACDSTNTLMISAGYH-----GDIKVWDFKGRDLKSRWEVGC------S 517 (764)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~------~ 517 (764)
++...+...... .+. ..+..++|+|+|+.|+..+.+ +.|++||+.+++......... .
T Consensus 221 ~d~~~~~~~~l~---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 291 (388)
T 3pe7_A 221 INEDGTNMRKVK---------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN 291 (388)
T ss_dssp EETTSCCCEESC---------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred EeCCCCceEEee---------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence 232222111111 121 246667788888766554431 238889988887544333221 0
Q ss_pred eEEEEEeecCCEEEEE---------eCCCeEEEEEccCCeEEEEeecCCC-----------CeeEEEEcCCCcEEEEEe-
Q 004270 518 LVKIVYHRVNGLLATV---------ADDLVIRLFDVVALRMVRKFEGHTD-----------RITDFCFSEDGKWLLSSG- 576 (764)
Q Consensus 518 i~~~~~s~~~~~la~~---------~~d~~i~v~d~~~~~~~~~~~~h~~-----------~i~~l~~s~dg~~l~s~s- 576 (764)
....+|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+.+++|+|||++|+.++
T Consensus 292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp TTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 1223799999988864 4566999999998875 45555655 578899999999888665
Q ss_pred CCCcEEEEEc
Q 004270 577 MDGSLRIWDV 586 (764)
Q Consensus 577 ~dg~i~iwd~ 586 (764)
.++...+|.+
T Consensus 371 ~~g~~~l~~~ 380 (388)
T 3pe7_A 371 VHGKPALYLA 380 (388)
T ss_dssp TTSSCEEEEE
T ss_pred CCCceeEEEE
Confidence 4666666644
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=2.3e-18 Score=177.16 Aligned_cols=301 Identities=13% Similarity=0.061 Sum_probs=207.3
Q ss_pred CEEEEEe------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc----------CCeEEEEEccCCce
Q 004270 152 NKVIVGS------QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS----------DGKIHVHNVRYDEE 215 (764)
Q Consensus 152 ~~l~~~~------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~----------dg~i~iwd~~~~~~ 215 (764)
+++++.. .|+.|.+||..+++.+..+..+..+ .++|+|++++++++.. ++.|.+||..+++.
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~ 93 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF 93 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence 4555543 3679999999999999998876555 8999999999999863 57899999999999
Q ss_pred EEEEeccC-----CCCEEEEEEeeCCCCEEEEEe-C-CCcEEEEECCCceeeee-eecccccCeeEEEEecCC-CEEEEE
Q 004270 216 LVTFTHSM-----RGAVTALAFSSDGQPLLASGA-S-SGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANE-PVLMSA 286 (764)
Q Consensus 216 ~~~~~~~~-----~~~v~~l~fs~d~~~~l~sg~-~-dg~i~iwd~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~~l~s~ 286 (764)
+.++.... ......++|+|||+ +|+++. . ++.|.+||+.+++.+.. +. +. ....+.+.|++ ..+++.
T Consensus 94 ~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 94 EKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp EEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEE
T ss_pred EEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCCCCeeEEEE
Confidence 88886431 23467899999999 666654 3 68999999999988877 54 22 22335677765 577888
Q ss_pred cCCCcEEEEEecCCCCCceeeE------eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHH
Q 004270 287 SADNSIKMWIFDTTDGDPRLLR------FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360 (764)
Q Consensus 287 ~~d~~i~vw~~~~~~~~~~~~~------~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 360 (764)
+.||.+.+|+++... +... .+..+..+ ..+.+.+++..++..+.++.+.++|+.......
T Consensus 170 ~~dg~~~~v~~~~~g---~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------- 235 (361)
T 2oiz_A 170 CGDGGLLTINLGEDG---KVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------- 235 (361)
T ss_dssp ETTSSEEEEEECTTS---SEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE----------
T ss_pred CCCCcEEEEEECCCC---cEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee----------
Confidence 899999999875422 1110 11111111 122334555555555555656665543211000
Q ss_pred HhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEE
Q 004270 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 440 (764)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 440 (764)
T Consensus 236 -------------------------------------------------------------------------------- 235 (361)
T 2oiz_A 236 -------------------------------------------------------------------------------- 235 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCCee
Q 004270 441 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----------HGDIKVWDFKGRDLK 509 (764)
Q Consensus 441 ~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~ 509 (764)
+..|++........ .........++++|+++.++.+.. .+.|.+||+.+++.+
T Consensus 236 -------~~~~~~~~~~~~~~---------~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v 299 (361)
T 2oiz_A 236 -------DGPWSLLNDEDKAK---------NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV 299 (361)
T ss_dssp -------EEEEESCCHHHHHT---------TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred -------cccccccCcccccc---------ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence 00011100000000 000011113678999877776543 358999999999999
Q ss_pred eeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC--eEEEEeecCCCCeeEEEEcCCCc
Q 004270 510 SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--RMVRKFEGHTDRITDFCFSEDGK 570 (764)
Q Consensus 510 ~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~--~~~~~~~~h~~~i~~l~~s~dg~ 570 (764)
.++..+. +..++|+|||++|++++. +.|.+||..++ +.+.++..+......++++|||+
T Consensus 300 ~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 300 ARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999888 999999999999998887 99999999999 99999877777889999999986
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=4.1e-19 Score=183.99 Aligned_cols=277 Identities=15% Similarity=0.163 Sum_probs=187.9
Q ss_pred EEEEcCC--CcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEee-cccccccccchhhh
Q 004270 283 LMSASAD--NSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI-QDQQSRELSQRHVA 358 (764)
Q Consensus 283 l~s~~~d--~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~-~~~~~~~~~~~~~~ 358 (764)
++.|+.. +.|.+|+++...+....+.... +....+..++|+|+|++|++++.+ .+.+|++. +++......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~----- 78 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS----- 78 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-----
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-----
Confidence 4455442 5688888876555433333221 344578899999999999998887 89999986 332111000
Q ss_pred HHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCE
Q 004270 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438 (764)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 438 (764)
.. .. ..+..++++|+|++
T Consensus 79 --------------------------------------------------------~~-----~~-g~~~~~~~spdg~~ 96 (365)
T 1jof_A 79 --------------------------------------------------------HP-----IG-GHPRANDADTNTRA 96 (365)
T ss_dssp --------------------------------------------------------EE-----CC-SSGGGGCTTSCCEE
T ss_pred --------------------------------------------------------ee-----cC-CCCccEEECCCCCE
Confidence 00 00 11334778999985
Q ss_pred --EEEEe-------------cCCcEEEEECc-CCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CCeEEEE
Q 004270 439 --AVLGT-------------AGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVW 501 (764)
Q Consensus 439 --l~~g~-------------~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iw 501 (764)
++++. .+|.+.+|++. .+.....+... ...+...+.+++|+|+|++++++.. ++.|++|
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 97 IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY----EYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE----ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE----EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 44442 68899999997 45443322100 0124567899999999998887764 6899999
Q ss_pred ECC-CCCee--eeEe---cCcceEEEEEeecCCEEEEEeC-CCeEEEEEcc--CCeEE---EEee-------cCCC----
Q 004270 502 DFK-GRDLK--SRWE---VGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALRMV---RKFE-------GHTD---- 558 (764)
Q Consensus 502 d~~-~~~~~--~~~~---~~~~i~~~~~s~~~~~la~~~~-d~~i~v~d~~--~~~~~---~~~~-------~h~~---- 558 (764)
++. +++.. ..+. +...+..++|+|||+++++++. ++.|.+|+++ +++.. ..+. +|..
T Consensus 173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (365)
T 1jof_A 173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK 252 (365)
T ss_dssp EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence 998 67653 2333 1456899999999999988775 6899999875 56542 2222 1222
Q ss_pred --CeeEEE-EcCCCcEEEEEeCCC------cEEEEEcC-ccceEEE---Eee-CCceEEEEEcC---CCCeEEEEEeCCC
Q 004270 559 --RITDFC-FSEDGKWLLSSGMDG------SLRIWDVI-LARQIDA---IHV-DVSITALSLSP---NMDVLATAHVDQN 621 (764)
Q Consensus 559 --~i~~l~-~s~dg~~l~s~s~dg------~i~iwd~~-~~~~~~~---~~~-~~~v~~l~~sp---~g~~lat~~~d~~ 621 (764)
.+..++ |+|||++|++++.+. +|.+|++. +|++... +.. ...+..++|+| ||++|++++.++.
T Consensus 253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence 488999 999999988766432 89999996 6765542 332 23478899999 8999999988755
Q ss_pred eEEEEecccc
Q 004270 622 GVYLWVNRCM 631 (764)
Q Consensus 622 ~i~lW~~~~~ 631 (764)
.|.+|+.+..
T Consensus 333 ~v~v~~~~~~ 342 (365)
T 1jof_A 333 WLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEEchh
Confidence 7999998643
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=6.4e-20 Score=193.53 Aligned_cols=205 Identities=14% Similarity=0.115 Sum_probs=159.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc-------ceecCccccccccccCcEEEEEECCCCCEEE----EEe
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-------GSYLDMSERSNYAHNGEVVGVACDSTNTLMI----SAG 493 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~----s~~ 493 (764)
..+..+++++++.++++++.+| +.+|+....... .............+...|.+++|+|++++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4678899999999999999888 888876432111 0000000001124567899999999999999 788
Q ss_pred CCCeEEEEECCCC--------Cee---eeEe-cCcceEEEEEeec-CCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe
Q 004270 494 YHGDIKVWDFKGR--------DLK---SRWE-VGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560 (764)
Q Consensus 494 ~dg~v~iwd~~~~--------~~~---~~~~-~~~~i~~~~~s~~-~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i 560 (764)
.|+.|++||+.++ +.+ ..+. +...|.+++|+|+ +.+|++++.||+|++||++++..+....+|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 8999999998754 222 2222 3488999999998 7899999999999999999998887788899999
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC--------CceEEEEEcCCCCeEEEEEeCC------CeEEEE
Q 004270 561 TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--------VSITALSLSPNMDVLATAHVDQ------NGVYLW 626 (764)
Q Consensus 561 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~v~~l~~sp~g~~lat~~~d~------~~i~lW 626 (764)
++++|+|+|++|++|+.||+|++||+. ++....+..+ ..|.+++|++++.++++.+... ..+++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999998 6666665432 1599999999999887655432 248999
Q ss_pred ecccc
Q 004270 627 VNRCM 631 (764)
Q Consensus 627 ~~~~~ 631 (764)
+++..
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 98754
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=2.5e-18 Score=178.11 Aligned_cols=288 Identities=12% Similarity=0.157 Sum_probs=190.2
Q ss_pred EEEEEeCC--CcEEEEeC--CCCeEEE--EEc-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc-CCceEEEEeccCC
Q 004270 153 KVIVGSQE--GSLQLWNI--STKKKLY--EFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMR 224 (764)
Q Consensus 153 ~l~~~~~d--g~i~iwd~--~~~~~~~--~~~-~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~~ 224 (764)
++++|+.. +.|.+|++ .++++.. ... .....+..++|+|++++|++++.+ .|.+|++. +++..........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 57777764 46887764 5676532 222 234578899999999999999887 99999997 7776544332112
Q ss_pred CCEEEEEEeeCCCC-EEEEEe-------------CCCcEEEEECC-Cceeeeeeec---ccccCeeEEEEecCCCEEEEE
Q 004270 225 GAVTALAFSSDGQP-LLASGA-------------SSGVISIWNLE-KRRLQSVIRE---AHDNAIISLHFFANEPVLMSA 286 (764)
Q Consensus 225 ~~v~~l~fs~d~~~-~l~sg~-------------~dg~i~iwd~~-~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~ 286 (764)
+.+.+++|+|||+. +++++. .+|.+.+|++. +++....+.. .+...+.+++|+|+|++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 33566899999984 234442 68999999997 4655443331 245679999999999988776
Q ss_pred c-CCCcEEEEEecCCCCCceeeEecc--CCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEeec--ccccccccchhhhHH
Q 004270 287 S-ADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQ--DQQSRELSQRHVAKR 360 (764)
Q Consensus 287 ~-~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~~~--~~~~~~~~~~~~~~~ 360 (764)
. .++.|++|+++. .+....+.... .|...+..++|+|||+++++++. ++.+.+|++.. ++.......
T Consensus 163 ~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~------ 235 (365)
T 1jof_A 163 DLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS------ 235 (365)
T ss_dssp ETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred cCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce------
Confidence 5 468999999973 22222222232 24567899999999999988775 68899998753 211000000
Q ss_pred HhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC-CCCCCC------CeEEEE-E
Q 004270 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP-CPENPT------AVKACT-I 432 (764)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~------~v~~~~-~ 432 (764)
...+.. ..++.. .+..++ +
T Consensus 236 -----------------------------------------------------~~~~~~~~~g~~~~~~~~~~~~~i~~~ 262 (365)
T 1jof_A 236 -----------------------------------------------------FPLIPPGIPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp -----------------------------------------------------EESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred -----------------------------------------------------EEcCCCCcCCcccccccccccccEEEE
Confidence 000000 001111 578899 9
Q ss_pred ccCCCEEEEEecCC------cEEEEECc-CCcccceecCccccccccccCcEEEEEECC---CCCEEEEEeCC-CeEEEE
Q 004270 433 SACGNFAVLGTAGG------WIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYH-GDIKVW 501 (764)
Q Consensus 433 s~~g~~l~~g~~~g------~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~d-g~v~iw 501 (764)
+|+|++++++..+. .|.+|++. ++........ ...+...+..++|+| +|++|++++.+ +.|++|
T Consensus 263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~-----~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-----SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-----EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-----eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence 99999998876543 89999986 5554321100 012344566789999 89999998864 899999
Q ss_pred ECCCC
Q 004270 502 DFKGR 506 (764)
Q Consensus 502 d~~~~ 506 (764)
+++..
T Consensus 338 ~~~~~ 342 (365)
T 1jof_A 338 RWKDE 342 (365)
T ss_dssp EEETT
T ss_pred EEchh
Confidence 98765
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=1.3e-19 Score=190.70 Aligned_cols=318 Identities=9% Similarity=-0.026 Sum_probs=214.0
Q ss_pred EEEeCCCCeEEEEEcCCCCC-----eEEEEEcCCCCEEEEEEcC---CeEEEEEccCCceEEEEeccCCCCEEEEEEeeC
Q 004270 164 QLWNISTKKKLYEFKGWGSS-----ISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD 235 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~-----i~~~~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d 235 (764)
...|..+++.+..+..+... +..++|||+|++|+..... ..|.+||+.+++... +..+.......+.|+||
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCC
Confidence 34577888888888765444 7788999999998877653 478889998876543 33332222334789999
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCC
Q 004270 236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (764)
Q Consensus 236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (764)
|+ .|+.++.++.|++||+.+++...... .+.. |+++++.|+..+.+....+|..
T Consensus 92 g~-~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~------~~~~g~~l~~~~~~~~~~~~~~------------------ 145 (396)
T 3c5m_A 92 ER-AFFYVKNELNLMKVDLETLEEQVIYT-VDEE------WKGYGTWVANSDCTKLVGIEIL------------------ 145 (396)
T ss_dssp SS-EEEEEETTTEEEEEETTTCCEEEEEE-CCTT------EEEEEEEEECTTSSEEEEEEEE------------------
T ss_pred CC-EEEEEEcCCcEEEEECCCCCcEEEEe-cccc------cCCCCCEEEeccCCcccccccc------------------
Confidence 99 78888888899999999887655544 3332 7778888887776665555531
Q ss_pred CCeeEEEecCCCEEEEE-----eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 316 PPLCIRFYANGRHILSA-----GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 316 ~v~~i~~~~~~~~l~s~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
.+.++|+++.++.. ..+..|.+||+.+++.....
T Consensus 146 ---~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-------------------------------------- 184 (396)
T 3c5m_A 146 ---KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-------------------------------------- 184 (396)
T ss_dssp ---GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--------------------------------------
T ss_pred ---ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--------------------------------------
Confidence 22356777766543 34556777776543211100
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEcc-CCCEEEEEecC------CcEEEEECcCCcccceec
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAG------GWIERFNLQSGISRGSYL 463 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~~------g~i~i~~~~~~~~~~~~~ 463 (764)
.+...+..+.|+| +|+.++..+.+ ..|.+|++..+......
T Consensus 185 -------------------------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~- 232 (396)
T 3c5m_A 185 -------------------------------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK- 232 (396)
T ss_dssp -------------------------------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-
T ss_pred -------------------------------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-
Confidence 1125678889999 88877766543 36888888765433221
Q ss_pred Cccccccccc-cCcEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCeeeeEecCcceEEEEEee-cCCEEEEEe--
Q 004270 464 DMSERSNYAH-NGEVVGVACDSTNTLMISAGYH-----GDIKVWDFKGRDLKSRWEVGCSLVKIVYHR-VNGLLATVA-- 534 (764)
Q Consensus 464 ~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~-- 534 (764)
... ...+..++|+|+|++|+.++.+ +.|++||+.+++......... .. +.|+| ||++++++.
T Consensus 233 -------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 233 -------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp -------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECC
T ss_pred -------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCC
Confidence 111 3358889999999988777654 459999999887655443332 33 89999 999888765
Q ss_pred --------------CCCeEEEEEccCCeEEEEeecCCC-----------CeeEEEEcCCCcEEEEEeC-CCcEEEE--Ec
Q 004270 535 --------------DDLVIRLFDVVALRMVRKFEGHTD-----------RITDFCFSEDGKWLLSSGM-DGSLRIW--DV 586 (764)
Q Consensus 535 --------------~d~~i~v~d~~~~~~~~~~~~h~~-----------~i~~l~~s~dg~~l~s~s~-dg~i~iw--d~ 586 (764)
.+..|++||+.+++.. .+..|.. .+..++|+|||++|+.++. ++...+| ++
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 3478999999888753 4555544 2567899999999887764 4554444 55
Q ss_pred Cccce
Q 004270 587 ILARQ 591 (764)
Q Consensus 587 ~~~~~ 591 (764)
.+++.
T Consensus 383 ~~~~~ 387 (396)
T 3c5m_A 383 PESYK 387 (396)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 55543
No 169
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=5.2e-18 Score=178.91 Aligned_cols=259 Identities=14% Similarity=0.142 Sum_probs=174.6
Q ss_pred CeEEEEecCceEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCccc------------ccceeeEecCCccccE
Q 004270 75 NHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN------------LAPVGHVKLDDKFTPT 142 (764)
Q Consensus 75 ~~i~vw~~~~~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~------------~~~~~~~~~~~~~~~~ 142 (764)
..+++|+.... +........++..++.++++++.++ +++|+....... ..+...+. +...+..
T Consensus 23 ~~vri~~~~~~---~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 97 (434)
T 2oit_A 23 KKVRIFDSPEE---LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP-MKFPIHH 97 (434)
T ss_dssp CEEECSCCCSS---CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC-CSSCEEE
T ss_pred eeEEecCCccc---cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccccc-CCCcccE
Confidence 45777764322 1122233334444678888888777 888876432110 00011111 2345778
Q ss_pred EEEeCCCCCCEEE----EEeCCCcEEEEeCCCC--------e---EEEEEcCCCCCeEEEEEcCC-CCEEEEEEcCCeEE
Q 004270 143 CIMHPDTYLNKVI----VGSQEGSLQLWNISTK--------K---KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIH 206 (764)
Q Consensus 143 ~~~~p~~~~~~l~----~~~~dg~i~iwd~~~~--------~---~~~~~~~h~~~i~~~~~sp~-~~~la~g~~dg~i~ 206 (764)
++|+|++ ++|+ +|+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +++|++++.||+|+
T Consensus 98 l~~spdg--~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~ 175 (434)
T 2oit_A 98 LALSCDN--LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIA 175 (434)
T ss_dssp EEECTTS--CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEEcCCC--CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEE
Confidence 8899999 7888 6888999999998654 2 24566789999999999998 88999999999999
Q ss_pred EEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec------ccccCeeEEEEecCC
Q 004270 207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANE 280 (764)
Q Consensus 207 iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~h~~~v~~l~~~~~~ 280 (764)
+||++++..+..... |...|.+++|+|+|+ +|++|+.||.|++||++ ++....+.. .|...|.+++|++++
T Consensus 176 iwD~~~~~~~~~~~~-~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 176 VLQVTETVKVCATLP-STVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEESSSEEEEEEEC-GGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEcCCCcceeeccC-CCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 999999876655544 378999999999998 89999999999999998 544444431 133489999999988
Q ss_pred CEEEEE-cCCC------cEEEEEecCCCCC-ceeeEecc-------CCCCCCeeEEEecCCCEEEEEeC-CCcEEEEEe
Q 004270 281 PVLMSA-SADN------SIKMWIFDTTDGD-PRLLRFRS-------GHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSV 343 (764)
Q Consensus 281 ~~l~s~-~~d~------~i~vw~~~~~~~~-~~~~~~~~-------~h~~~v~~i~~~~~~~~l~s~~~-dg~i~i~d~ 343 (764)
.++++. +.|| .+++|++...... ......+. +...+-..+.+.++.+++++++. ...+.++..
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 776543 3343 3899998765332 11111111 22334444555577777776654 445666654
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=4.6e-20 Score=194.06 Aligned_cols=314 Identities=10% Similarity=0.058 Sum_probs=208.7
Q ss_pred EEEEccCCceEEEEeccCCC-----CEEEEEEeeCCCCEEEEE-eCC--CcEEEEECCCceeeeeeecccccCeeEEEEe
Q 004270 206 HVHNVRYDEELVTFTHSMRG-----AVTALAFSSDGQPLLASG-ASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFF 277 (764)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~-----~v~~l~fs~d~~~~l~sg-~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~ 277 (764)
...|..+++.+..+..+ .. .+.+++|+|||+ .|+.. ..+ ..|.+||+.+++...... ++......+.|+
T Consensus 13 ~~~d~~~g~~~~~l~~~-~~~~~~~~~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~s 89 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPT-DIICHRNYFYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFIS 89 (396)
T ss_dssp EEECTTTCCEEEECSCT-TSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEEC
T ss_pred eeecCCCCcceEEEecC-CCCccceeeecCcCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceEC
Confidence 45577788877777543 22 267789999999 55544 333 468899998887655433 333333447899
Q ss_pred cCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (764)
Q Consensus 278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (764)
||++.|+.++.++.|.+|+++... .+.+. ..+.. |+++|+.|+..+.++...+|..
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~--~~~~~--~~~~~------~~~~g~~l~~~~~~~~~~~~~~-------------- 145 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLE--EQVIY--TVDEE------WKGYGTWVANSDCTKLVGIEIL-------------- 145 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCC--EEEEE--ECCTT------EEEEEEEEECTTSSEEEEEEEE--------------
T ss_pred CCCCEEEEEEcCCcEEEEECCCCC--cEEEE--ecccc------cCCCCCEEEeccCCcccccccc--------------
Confidence 999999999998889999876542 22222 22222 6677777776655544443321
Q ss_pred hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (764)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (764)
.+.++|+++
T Consensus 146 -----------------------------------------------------------------------~~~~spdg~ 154 (396)
T 3c5m_A 146 -----------------------------------------------------------------------KRDWQPLTS 154 (396)
T ss_dssp -----------------------------------------------------------------------GGGCCCCCS
T ss_pred -----------------------------------------------------------------------ccccCCCCc
Confidence 012455666
Q ss_pred EEEEE-----ecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCC------CeEEEEECCC
Q 004270 438 FAVLG-----TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYH------GDIKVWDFKG 505 (764)
Q Consensus 438 ~l~~g-----~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d------g~v~iwd~~~ 505 (764)
.+++. ..+..|.+||+.++...... .+...+..+.|+| +++.|+..+.+ ..|.+||+.+
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~---------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH---------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG 225 (396)
T ss_dssp HHHHHHHHHTCCCEEEEEEETTTCCEEEEE---------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred ceeeeeeccCCCcceEEEEECCCCcEEeec---------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence 55543 24567889998887654433 4566789999999 78877766543 3688899877
Q ss_pred CCeeeeEec--CcceEEEEEeecCCEEEEEeCC-----CeEEEEEccCCeEEEEeecCCCCeeEEEEcC-CCcEEEEEe-
Q 004270 506 RDLKSRWEV--GCSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSG- 576 (764)
Q Consensus 506 ~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~d-----~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~-dg~~l~s~s- 576 (764)
++....... ...+..++|+|+|++|+.++.+ +.|++||+.+++...... .. ... +.|+| ||+++++++
T Consensus 226 ~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 226 SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEEC
T ss_pred CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecC
Confidence 654443332 2357889999999988777554 459999999886544322 21 233 89999 999888765
Q ss_pred ---------------CCCcEEEEEcCccceEEEEeeCC-----------ceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 577 ---------------MDGSLRIWDVILARQIDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 577 ---------------~dg~i~iwd~~~~~~~~~~~~~~-----------~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.+..|++||+.+++......... .+..++|+|||++|+.++.+.....+|.++
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 34789999999887543333332 256789999999999888654345566543
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.81 E-value=2e-16 Score=170.66 Aligned_cols=326 Identities=12% Similarity=0.052 Sum_probs=227.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcc--CCceEEEEeccCCCCEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTA 229 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~ 229 (764)
..+++...+++|.++|..+++.+.++.. ...+..+.|+|||+++++++.++.|.+||+. +++.+.++..+ .....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ 244 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARS 244 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCce
Confidence 3556667789999999999999999875 4467799999999999999999999999996 88888888764 45789
Q ss_pred EEEe----eCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---------ccc-CeeEEEEecCCCE-EEEEcCCCcEEE
Q 004270 230 LAFS----SDGQPLLASGASSGVISIWNLEKRRLQSVIREA---------HDN-AIISLHFFANEPV-LMSASADNSIKM 294 (764)
Q Consensus 230 l~fs----~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---------h~~-~v~~l~~~~~~~~-l~s~~~d~~i~v 294 (764)
++|+ |||++++++...++.|.++|..+.+.+..+... |.. .+..+..+++++. ++....+|.|.+
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 9999 699955555567799999999999888877621 222 5778888888764 445556788888
Q ss_pred EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
+|+..... ..+..+ ........+.|+|+|++++++. .++.|.++|+.+++....+
T Consensus 325 vd~~~~~~--~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i--------------------- 380 (567)
T 1qks_A 325 VDYTDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE--------------------- 380 (567)
T ss_dssp EETTCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE---------------------
T ss_pred EecCCCcc--ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE---------------------
Confidence 87754321 111111 2334566778888888877665 4566777776543211110
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~ 453 (764)
++
T Consensus 381 ------------------------------------------------------------------------------~v 382 (567)
T 1qks_A 381 ------------------------------------------------------------------------------DT 382 (567)
T ss_dssp ------------------------------------------------------------------------------EC
T ss_pred ------------------------------------------------------------------------------ec
Confidence 00
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCCEE-EEEe-CCCeEEEEECCC-------CCeeeeEecC-cceEEEEE
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAG-YHGDIKVWDFKG-------RDLKSRWEVG-CSLVKIVY 523 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~-~dg~v~iwd~~~-------~~~~~~~~~~-~~i~~~~~ 523 (764)
- + ...|.+.-..+ ++|++..+ +++. .++.|.++|..+ .+.+.++... ..-..+..
T Consensus 383 g-g-------------~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~ 447 (567)
T 1qks_A 383 G-G-------------QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT 447 (567)
T ss_dssp S-S-------------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred c-C-------------cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe
Confidence 0 0 01343322122 56764434 4443 457888998877 5566777655 33355778
Q ss_pred eecCCEEEEEeC-------CCeEEEEEccCC-----e-EEEEee--------cCCCCeeEEEEcCCCcEEEEEe-----C
Q 004270 524 HRVNGLLATVAD-------DLVIRLFDVVAL-----R-MVRKFE--------GHTDRITDFCFSEDGKWLLSSG-----M 577 (764)
Q Consensus 524 s~~~~~la~~~~-------d~~i~v~d~~~~-----~-~~~~~~--------~h~~~i~~l~~s~dg~~l~s~s-----~ 577 (764)
+|+++++.+... ..+|.|+|+.+. . ....+. .....+..+.|+|+|+++..+. .
T Consensus 448 ~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~ 527 (567)
T 1qks_A 448 HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQ 527 (567)
T ss_dssp CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTS
T ss_pred CCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCC
Confidence 999999988763 459999999877 2 112332 1235789999999999877653 3
Q ss_pred CCcEEEEEcCccceEEEEee
Q 004270 578 DGSLRIWDVILARQIDAIHV 597 (764)
Q Consensus 578 dg~i~iwd~~~~~~~~~~~~ 597 (764)
++.|.|+|.++++++..++.
T Consensus 528 ~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 528 ESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp CCEEEEEETTTTEEEEEECC
T ss_pred CCcEEEEECCCceEEEEeCC
Confidence 79999999999999988874
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=3.5e-17 Score=184.44 Aligned_cols=327 Identities=11% Similarity=0.025 Sum_probs=209.4
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEE--EcCCeEEEEEccCCceEEEEeccCCCCEE---------EEEEe--eCCCC-EEEE
Q 004270 177 FKGWGSSISSCVSSPALDVVAVG--CSDGKIHVHNVRYDEELVTFTHSMRGAVT---------ALAFS--SDGQP-LLAS 242 (764)
Q Consensus 177 ~~~h~~~i~~~~~sp~~~~la~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---------~l~fs--~d~~~-~l~s 242 (764)
+.+|...+..++++++.-+++.. ..++...||....+.....+..+ ...+. ...|+ |||+. ++++
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPA-PWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT-TCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCC-CccccccccccCCccceeeeecCCCeEEEEE
Confidence 45678899999999886666666 45789999997656666666554 34455 55565 99995 4444
Q ss_pred EeCCCcEEEEECC--C-ceeeeeeecc----cccCeeEEEEecCCCEEEEEcCC----------CcEEEEEecCCC----
Q 004270 243 GASSGVISIWNLE--K-RRLQSVIREA----HDNAIISLHFFANEPVLMSASAD----------NSIKMWIFDTTD---- 301 (764)
Q Consensus 243 g~~dg~i~iwd~~--~-~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~~~d----------~~i~vw~~~~~~---- 301 (764)
...+..|.++++. . ++ ...+... |...+.+++|+|||+.|++++.+ ..|.+|+++...
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 4446778888876 3 43 3333311 66788999999999999998876 578888876521
Q ss_pred CCceeeEecc-CCCCCCeeEEEecCCCEEEEEeCCC--------cEEEEEee-ccc--ccccccchhhhHHHhhccchhh
Q 004270 302 GDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDR--------AFRLFSVI-QDQ--QSRELSQRHVAKRARKLKMKEE 369 (764)
Q Consensus 302 ~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg--------~i~i~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 369 (764)
+ . ...+. .+...+..++|+|||++|+.++.++ .|++||+. ++. ....+.
T Consensus 177 ~--~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~---------------- 237 (662)
T 3azo_A 177 S--A-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL---------------- 237 (662)
T ss_dssp G--G-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE----------------
T ss_pred C--c-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC----------------
Confidence 1 1 22333 4556778899999999999877553 57777775 221 111100
Q ss_pred hhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC--c
Q 004270 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--W 447 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g--~ 447 (764)
..+...+..++|+|||++++++..+| .
T Consensus 238 ---------------------------------------------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~ 266 (662)
T 3azo_A 238 ---------------------------------------------------GGPEEAIAQAEWAPDGSLIVATDRTGWWN 266 (662)
T ss_dssp ---------------------------------------------------EETTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred ---------------------------------------------------CCCCceEcceEECCCCeEEEEECCCCCeE
Confidence 01235678899999999888888888 6
Q ss_pred EEEEECcCCcccceecCccccccccccC--------cEEEEEECCCCCEEEEEeCCCeEEEE--ECCCCCeeeeEecC-c
Q 004270 448 IERFNLQSGISRGSYLDMSERSNYAHNG--------EVVGVACDSTNTLMISAGYHGDIKVW--DFKGRDLKSRWEVG-C 516 (764)
Q Consensus 448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~l~~~~~~~~l~s~~~dg~v~iw--d~~~~~~~~~~~~~-~ 516 (764)
|.+|++.++....... .+.. .+..++|+++++++++++. +.+++| |+.+++ +..+..+ .
T Consensus 267 l~~~~~~~~~~~~l~~--------~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~ 336 (662)
T 3azo_A 267 LHRVDPATGAATQLCR--------REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWT 336 (662)
T ss_dssp EEEECTTTCCEEESSC--------CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCC
T ss_pred EEEEECCCCceeeccc--------ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCC
Confidence 7777776665443221 1111 1567899999999999998 999999 555555 4445444 4
Q ss_pred ceEEEEEeecCCEEE--EEeCCC--eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEc
Q 004270 517 SLVKIVYHRVNGLLA--TVADDL--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 517 ~i~~~~~s~~~~~la--~~~~d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~ 586 (764)
.+..+ ++++++.++ .++.+. .|.++|+.+++.......|...+....+++.....+.+..+..|..|-.
T Consensus 337 ~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 337 EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 45544 256666444 334443 5666677777765544555555555555554444444433445655543
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=5.1e-17 Score=183.11 Aligned_cols=293 Identities=11% Similarity=0.013 Sum_probs=193.1
Q ss_pred CCCCEEEEEEeeCCCCEEEEE--eCCCcEEEEECCCceeeeeeecccccCee---------EEEEe--cCCCE-EEEEcC
Q 004270 223 MRGAVTALAFSSDGQPLLASG--ASSGVISIWNLEKRRLQSVIREAHDNAII---------SLHFF--ANEPV-LMSASA 288 (764)
Q Consensus 223 ~~~~v~~l~fs~d~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~h~~~v~---------~l~~~--~~~~~-l~s~~~ 288 (764)
|...+..++|++++- +++.. +.++...||....+.....+. .|...+. ...|+ ||++. |+.++.
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 367899999998765 55555 457889999864444444454 4555555 66676 99998 776654
Q ss_pred CCcEEEEEecCC--C-CCceeeEecc--CCCCCCeeEEEecCCCEEEEEeCC----------CcEEEEEeec------cc
Q 004270 289 DNSIKMWIFDTT--D-GDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQD----------RAFRLFSVIQ------DQ 347 (764)
Q Consensus 289 d~~i~vw~~~~~--~-~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~d----------g~i~i~d~~~------~~ 347 (764)
. ...+|.++.. . +..+.+.... .|...+..++|+|||+.|++++.+ ..|++|++.+ +.
T Consensus 100 ~-~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 100 G-DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp T-TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred C-CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 2 4455555543 1 2222221110 056678899999999999988866 3566666544 11
Q ss_pred ccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCe
Q 004270 348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 427 (764)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 427 (764)
. ..+ . ..+...+
T Consensus 179 ~-~~l-----------------------------------------------------------------~--~~~~~~~ 190 (662)
T 3azo_A 179 V-REL-----------------------------------------------------------------S--DDAHRFV 190 (662)
T ss_dssp S-EES-----------------------------------------------------------------S--CSCSSEE
T ss_pred e-eEE-----------------------------------------------------------------E--ecCCCcc
Confidence 1 000 0 0112456
Q ss_pred EEEEEccCCCEEEEEecC--------CcEEEEECc-CCc--ccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270 428 KACTISACGNFAVLGTAG--------GWIERFNLQ-SGI--SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (764)
Q Consensus 428 ~~~~~s~~g~~l~~g~~~--------g~i~i~~~~-~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (764)
..++|||||++|+.++.+ ..|++|++. ++. ....+. ..|...+..++|+|||++++++..++
T Consensus 191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------~~~~~~~~~~~~spdg~l~~~~~~~~ 263 (662)
T 3azo_A 191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-------GGPEEAIAQAEWAPDGSLIVATDRTG 263 (662)
T ss_dssp CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-------EETTBCEEEEEECTTSCEEEEECTTS
T ss_pred cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-------CCCCceEcceEECCCCeEEEEECCCC
Confidence 678999999999988755 379999998 562 222222 25578899999999999888888888
Q ss_pred --eEEEEECCCCCeeeeEecCcc---------eEEEEEeecCCEEEEEeCCCeEEEE--EccCCeEEEEeecCCCCeeEE
Q 004270 497 --DIKVWDFKGRDLKSRWEVGCS---------LVKIVYHRVNGLLATVADDLVIRLF--DVVALRMVRKFEGHTDRITDF 563 (764)
Q Consensus 497 --~v~iwd~~~~~~~~~~~~~~~---------i~~~~~s~~~~~la~~~~d~~i~v~--d~~~~~~~~~~~~h~~~i~~l 563 (764)
.|.+||..+++.......+.. +..+++++++++++++.. +.++|| |+.+++ +..+..|...+..+
T Consensus 264 ~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 264 WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence 666677667766554443322 467899999999999998 999999 555565 67888888888877
Q ss_pred -EEcCCCcEEEEEeCCC--cEEEEEcCccceEEEE
Q 004270 564 -CFSEDGKWLLSSGMDG--SLRIWDVILARQIDAI 595 (764)
Q Consensus 564 -~~s~dg~~l~s~s~dg--~i~iwd~~~~~~~~~~ 595 (764)
+++++.-++++++.+. .|.+||+.+++.....
T Consensus 342 ~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 342 LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence 5544333344455554 4556677777654443
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.76 E-value=3.8e-15 Score=160.69 Aligned_cols=338 Identities=10% Similarity=0.024 Sum_probs=230.6
Q ss_pred eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcC
Q 004270 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKG 179 (764)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~ 179 (764)
.+..+++...+++|.++|..+++. +.++.... ....+.++|++ +++++++.++.|.+||+. +++.+.++..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v----~~~i~~g~-~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEI----KTVLDTGY-AVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCE----EEEEECSS-CEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CceEEEEeCCCCeEEEEECCCCeE----EEEEeCCC-CccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 345667777789999999999988 66666443 33477899999 899999999999999996 8888888876
Q ss_pred CCCCeEEEEEc----CCCCEEEEEEc-CCeEEEEEccCCceEEEEeccC----------CCCEEEEEEeeCCCCEEEEEe
Q 004270 180 WGSSISSCVSS----PALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSM----------RGAVTALAFSSDGQPLLASGA 244 (764)
Q Consensus 180 h~~~i~~~~~s----p~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~----------~~~v~~l~fs~d~~~~l~sg~ 244 (764)
......++|+ |+|++++++.. ++.|.++|..+.+.+..+.... ...+..+.+++++..+++...
T Consensus 239 -G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 239 -GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 3456799999 69999888765 4999999999999988876321 226888999998875666667
Q ss_pred CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEecc-----CCCCCCe
Q 004270 245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRS-----GHSAPPL 318 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~-----~h~~~v~ 318 (764)
.+|.|.++|..+.+...............+.|+|++++++++. .++.|.++|..+. ++..... .|.+ .
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~----kl~~~i~vgg~~Phpg--~ 391 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG----KLVAIEDTGGQTPHPG--R 391 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSSBCCT--T
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC----cEEEEEeccCcCCCCc--c
Confidence 7899999998876433332223445677889999999876655 5789999988765 3333222 2332 2
Q ss_pred eEE-EecCCCEEE-EEe-CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEe
Q 004270 319 CIR-FYANGRHIL-SAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (764)
Q Consensus 319 ~i~-~~~~~~~l~-s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (764)
.+. ++|++..+. ++. .++.|.++|......... .|..
T Consensus 392 g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~------------------------------------~~kv---- 431 (567)
T 1qks_A 392 GANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN------------------------------------AWKI---- 431 (567)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT------------------------------------BTSE----
T ss_pred ceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccc------------------------------------cCEE----
Confidence 333 577755554 443 468899999865221000 0000
Q ss_pred eeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-------CCcEEEEECcCC-----ccc-cee
Q 004270 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-------GGWIERFNLQSG-----ISR-GSY 462 (764)
Q Consensus 396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-------~g~i~i~~~~~~-----~~~-~~~ 462 (764)
+.. +. ........+..+|+++++.+... .+.|.+||+.+. ... ..+
T Consensus 432 ------v~~------------i~---~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~ 490 (567)
T 1qks_A 432 ------LDS------------FP---ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL 490 (567)
T ss_dssp ------EEE------------EE---CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEE
T ss_pred ------EEE------------Ee---cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEe
Confidence 000 00 00012233567999999999774 459999999876 211 111
Q ss_pred cCccccccccccCcEEEEEECCCCCEEEEEeC-----CCeEEEEECCCCCeeeeEec
Q 004270 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVWDFKGRDLKSRWEV 514 (764)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~ 514 (764)
....-..+..-...+..+.|+++|+.+..+.. ++.|.++|.++++++..++.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 491 PIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp CHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 10000000112457899999999998877643 78999999999998888774
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=1.5e-15 Score=151.42 Aligned_cols=242 Identities=13% Similarity=0.177 Sum_probs=179.8
Q ss_pred CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (764)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
++...+.+++++++++.+++...++.|.+||.. +.....+..
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~------------------------------------- 68 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGE------------------------------------- 68 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECC-------------------------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecc-------------------------------------
Confidence 556678999999999988888888999999864 221111100
Q ss_pred eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEE-ccCCCEEEEEec-CCcEEEEECcCCcccceecCccccc
Q 004270 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-SACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
......+...+..+++ .++|+++++... ++.|.+|+ .++.....+.
T Consensus 69 -------------------------~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~------ 116 (286)
T 1q7f_A 69 -------------------------CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG------ 116 (286)
T ss_dssp -------------------------BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC------
T ss_pred -------------------------cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec------
Confidence 0000122356788999 467776666644 88999999 5566555543
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
..+...+.+++++++++++++...++.|.+||.. ++.+..+.. ...+..++++++++++++...++.|++||..
T Consensus 117 -~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~- 193 (286)
T 1q7f_A 117 -ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE- 193 (286)
T ss_dssp -TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-
T ss_pred -CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-
Confidence 1345678999999999988888888999999954 556666543 2568899999999988888889999999974
Q ss_pred CeEEEEeecC--CCCeeEEEEcCCCcEEEEEeCCC-cEEEEEcCccceEEEEeeCCc---eEEEEEcCCCCeEEEEEeCC
Q 004270 547 LRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG-SLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 547 ~~~~~~~~~h--~~~i~~l~~s~dg~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~---v~~l~~sp~g~~lat~~~d~ 620 (764)
++.+..+..+ ...+..++++++|+++++...++ .|.+|| .+++.+..+..+.. +.+++++|+|+++++ +.++
T Consensus 194 g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~ 271 (286)
T 1q7f_A 194 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDY 271 (286)
T ss_dssp CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTT
T ss_pred CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCC
Confidence 5666666543 36789999999999888888776 999999 46788887766543 789999999987777 5566
Q ss_pred CeEEEEecc
Q 004270 621 NGVYLWVNR 629 (764)
Q Consensus 621 ~~i~lW~~~ 629 (764)
.|++|+..
T Consensus 272 -~v~v~~~~ 279 (286)
T 1q7f_A 272 -RLYIYRYV 279 (286)
T ss_dssp -EEEEEECS
T ss_pred -eEEEEEcc
Confidence 79999864
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=7.2e-16 Score=156.84 Aligned_cols=272 Identities=12% Similarity=0.041 Sum_probs=187.5
Q ss_pred CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccce
Q 004270 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (764)
Q Consensus 313 h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (764)
.-..+.+++++++|+.+++...++.+.+++..... .+... .
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~---~~~~~---------------------------------~--- 62 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKF---VYQQR---------------------------------G--- 62 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTS---CBSCG---------------------------------G---
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcce---eeccc---------------------------------c---
Confidence 34678999999999998888877654443322111 00000 0
Q ss_pred eEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc-ccceecCccc-ccc
Q 004270 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSE-RSN 470 (764)
Q Consensus 393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~-~~~ 470 (764)
.....++.+.+||..+....... ...+...+..++++++|+++++...++.|.+|+..... ....+..... ...
T Consensus 63 -~~~~~~~~i~~~d~~~g~~~~~~---~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~ 138 (329)
T 3fvz_A 63 -LGPIEEDTILVIDPNNAEILQSS---GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSD 138 (329)
T ss_dssp -GCSCCSCCEEEECTTTCCEEEEE---CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCS
T ss_pred -cccccCCcEEEEECCCCeEEecc---CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCC
Confidence 00013456777776554432111 11333578999999999988888889999999986542 3333311000 000
Q ss_pred ccccCcEEEEEECC-CCCEEEEEe-CCCeEEEEECCCCCeeeeEecC-----------cceEEEEEeec-CCEEEEEeCC
Q 004270 471 YAHNGEVVGVACDS-TNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG-----------CSLVKIVYHRV-NGLLATVADD 536 (764)
Q Consensus 471 ~~h~~~v~~l~~~~-~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-----------~~i~~~~~s~~-~~~la~~~~d 536 (764)
..+.....+++++| ++.++++.+ .++.|++|+ .+++.+..+... .....++++|+ +.++++...+
T Consensus 139 ~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 14455789999999 788888886 689999999 566766666422 23789999998 6777777788
Q ss_pred CeEEEEEccCCeEEEEee--cCCCCeeEEEEcCCCcEEEEE-------eCCCcEEEEEcCccceEEEEee----CCceEE
Q 004270 537 LVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLSS-------GMDGSLRIWDVILARQIDAIHV----DVSITA 603 (764)
Q Consensus 537 ~~i~v~d~~~~~~~~~~~--~h~~~i~~l~~s~dg~~l~s~-------s~dg~i~iwd~~~~~~~~~~~~----~~~v~~ 603 (764)
+.|++||..+++.+..+. ++...+.+++|+| +..+++. ..+..|++||..+++.+..+.. -..+.+
T Consensus 218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence 999999999899988884 4567789999999 4444333 3445899999999999988842 233899
Q ss_pred EEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 604 LSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 604 l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
++++|+|.++++...++ .|++|+...
T Consensus 297 ia~~~dG~lyvad~~~~-~I~~~~~~~ 322 (329)
T 3fvz_A 297 IVASEDGTVYIGDAHTN-TVWKFTLTE 322 (329)
T ss_dssp EEECTTSEEEEEESSSC-CEEEEEEEE
T ss_pred EEECCCCCEEEEECCCC-EEEEEeCCc
Confidence 99999997666666666 699999864
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=9.9e-16 Score=155.80 Aligned_cols=252 Identities=13% Similarity=0.114 Sum_probs=183.9
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCC------------------------CcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270 224 RGAVTALAFSSDGQPLLASGASS------------------------GVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~d------------------------g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~ 279 (764)
-+.+.+++++|+|+ ++++...+ +.|.+||..+++.......++-..+..+++.|+
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 35799999999998 77777766 479999999898876665455568899999999
Q ss_pred CCEEEEEcCCCcEEEEEecCCCCCceeeEec---------cCCCCCCeeEEEec-CCCEEEEEe-CCCcEEEEEeecccc
Q 004270 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFR---------SGHSAPPLCIRFYA-NGRHILSAG-QDRAFRLFSVIQDQQ 348 (764)
Q Consensus 280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~---------~~h~~~v~~i~~~~-~~~~l~s~~-~dg~i~i~d~~~~~~ 348 (764)
++++++...++.|++|+.+... ..+..+ .++...+..++++| ++..+++.+ .++.|++|+. .+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCE
T ss_pred CCEEEEECCCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCE
Confidence 9988888889999999764331 122222 34555789999999 788777776 6888888873 1111
Q ss_pred cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 428 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~ 428 (764)
...+
T Consensus 178 ~~~~---------------------------------------------------------------------------- 181 (329)
T 3fvz_A 178 VTQW---------------------------------------------------------------------------- 181 (329)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEe----------------------------------------------------------------------------
Confidence 1000
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCC
Q 004270 429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 429 ~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~ 507 (764)
...| .+.. . ..++-....+++++|+ +.++++...++.|++|+..+++
T Consensus 182 --------------~~~g--------~~~~--~--------~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 182 --------------GEES--------SGSS--P--------RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp --------------CEEC--------CSSS--C--------CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred --------------ccCC--------CCCC--C--------CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 0000 0000 0 0133345788999998 7777777788999999999888
Q ss_pred eeeeEecC---cceEEEEEee------cCCEEEEEeCCCeEEEEEccCCeEEEEee---cCCCCeeEEEEcCCCcEEEEE
Q 004270 508 LKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSS 575 (764)
Q Consensus 508 ~~~~~~~~---~~i~~~~~s~------~~~~la~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~s~dg~~l~s~ 575 (764)
.+..+... ..+..++++| +++..++...+..|++||..+++.+..+. ++...+..++++|||.++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 230 FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence 88877533 5678888988 33333333445689999999999998884 677789999999999888888
Q ss_pred eCCCcEEEEEcCc
Q 004270 576 GMDGSLRIWDVIL 588 (764)
Q Consensus 576 s~dg~i~iwd~~~ 588 (764)
..++.|++|++..
T Consensus 310 ~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 310 AHTNTVWKFTLTE 322 (329)
T ss_dssp SSSCCEEEEEEEE
T ss_pred CCCCEEEEEeCCc
Confidence 8999999999763
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=2.1e-15 Score=155.21 Aligned_cols=271 Identities=11% Similarity=0.085 Sum_probs=180.4
Q ss_pred CCeEEEEEcCCCCEEEEEE---------cCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC---C--
Q 004270 182 SSISSCVSSPALDVVAVGC---------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS---G-- 247 (764)
Q Consensus 182 ~~i~~~~~sp~~~~la~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d---g-- 247 (764)
..+...++ ||+.++... .++.|.+||+.+++... + ..+..++|+|||+ .|+..+.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-----~~~~~~~~SpDg~-~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-----ENATMPRISPDGK-KIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-----ESCEEEEECTTSS-EEEEEEEETTTTEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-----ccCCCeEECCCCC-EEEEEEeccCCCcc
Confidence 34566677 888777642 25679999999876533 3 4578999999999 66655532 2
Q ss_pred cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC---------------------------CcEEEEEecCC
Q 004270 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---------------------------NSIKMWIFDTT 300 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---------------------------~~i~vw~~~~~ 300 (764)
.|.+||+.+++...... +.. +..+.|+||++.|+.++.+ ..|.+|++...
T Consensus 86 ~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 86 EIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred eEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 48888998887665554 333 9999999999988887632 45677766543
Q ss_pred CCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC-------cEEEEEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-------AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
..+..+.. . .+..+.|+||| .++++..++ ...+|.+.++ ....+
T Consensus 163 ----~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l--------------------- 213 (347)
T 2gop_A 163 ----EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKM--------------------- 213 (347)
T ss_dssp ----EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEE---------------------
T ss_pred ----eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEEe---------------------
Confidence 22122222 2 78899999999 777776542 3445544311 10000
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC--------
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-------- 445 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~-------- 445 (764)
.. + ..+..+ +|+|++++.++.+
T Consensus 214 -------------------------------------------~~----~-~~~~~~--spdg~~l~~~~~~~~~~~~~~ 243 (347)
T 2gop_A 214 -------------------------------------------FE----K-VSFYAV--DSDGERILLYGKPEKKYMSEH 243 (347)
T ss_dssp -------------------------------------------EE----E-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred -------------------------------------------cc----C-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence 00 0 122233 8999988877654
Q ss_pred CcEEEEECcCCcccceecCccccccccccCcEEE-EEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEe
Q 004270 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG-VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH 524 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s 524 (764)
..|.+|+ ++...... ..|...+.. +.|+ ++ ++++++.++.+++| +.+++..........+.+++++
T Consensus 244 ~~l~~~d--~~~~~~l~--------~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 244 NKLYIYD--GKEVMGIL--------DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD 310 (347)
T ss_dssp CEEEEEC--SSCEEESS--------TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred ceEEEEC--CCceEecc--------ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence 3688888 44433322 256677886 9999 88 88999999999999 8866665555556788999999
Q ss_pred ecCCEEEEEeCCCeE-EEEEccCCeEEEEeecCCCCe
Q 004270 525 RVNGLLATVADDLVI-RLFDVVALRMVRKFEGHTDRI 560 (764)
Q Consensus 525 ~~~~~la~~~~d~~i-~v~d~~~~~~~~~~~~h~~~i 560 (764)
| .++++++.++.. .+|.++ ++ ...+..|...+
T Consensus 311 ~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~ 343 (347)
T 2gop_A 311 E--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI 343 (347)
T ss_dssp S--SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred C--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence 9 677777776654 777776 54 45566665543
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=1.1e-15 Score=156.13 Aligned_cols=268 Identities=12% Similarity=0.049 Sum_probs=193.8
Q ss_pred cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270 269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (764)
Q Consensus 269 ~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~ 348 (764)
..|.++.|++++..++..+.++.++.|.- .....+..+...+.+++|+++|+.++++..++.|.+||..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA-------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred cccceeeecCCccceeEEeecccCccccc-------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence 45778888988877777788889999921 34445556777789999999999777888889999998754432
Q ss_pred cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 428 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~ 428 (764)
.... . .....+.
T Consensus 79 ~~~~-----------------------------------------------------------------~---~~~~~~~ 90 (333)
T 2dg1_A 79 KRPF-----------------------------------------------------------------V---SHKANPA 90 (333)
T ss_dssp EEEE-----------------------------------------------------------------E---CSSSSEE
T ss_pred EEEe-----------------------------------------------------------------e---CCCCCcc
Confidence 1100 0 1125789
Q ss_pred EEEEccCCCEEEEEecC----CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC------CCeE
Q 004270 429 ACTISACGNFAVLGTAG----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGDI 498 (764)
Q Consensus 429 ~~~~s~~g~~l~~g~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------dg~v 498 (764)
+++++++|+++++...+ +.|.+||..++.....+.. ..+...+.+++++|+|+++++... .+.|
T Consensus 91 ~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l 164 (333)
T 2dg1_A 91 AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV 164 (333)
T ss_dssp EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred eEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc------CccCCcccceEECCCCCEEEEeccccccCCCceE
Confidence 99999999988877666 6899999988765433221 124467899999999988877654 3566
Q ss_pred EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEccC-CeEEE--------EeecCCCCeeEEEEcCC
Q 004270 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVA-LRMVR--------KFEGHTDRITDFCFSED 568 (764)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~-~~~~~--------~~~~h~~~i~~l~~s~d 568 (764)
..++..+++..........+..++++|+++.++++ ..++.|.+||..+ +..+. .+.++ ..+..++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~ 243 (333)
T 2dg1_A 165 YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSD 243 (333)
T ss_dssp EEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTT
T ss_pred EEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCC
Confidence 66666655554443334567889999999866554 5678999999963 33221 12222 46788999999
Q ss_pred CcEEEEEeCCCcEEEEEcCccceEEEEeeCC-------ceEEEEEcCCCCeEEEEEeC
Q 004270 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 569 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~v~~l~~sp~g~~lat~~~d 619 (764)
|+++++...++.|.+||. +++.+..+..+. .+.+++|+||+..|+.++.+
T Consensus 244 G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 244 DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 998888878899999998 577787776654 48999999998888776665
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=3.5e-15 Score=148.71 Aligned_cols=242 Identities=12% Similarity=0.151 Sum_probs=176.1
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec------cCCCCCCeeEEEe-cCCCEEEEEeC-CCc
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR------SGHSAPPLCIRFY-ANGRHILSAGQ-DRA 337 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~------~~h~~~v~~i~~~-~~~~~l~s~~~-dg~ 337 (764)
++-..+.++++++++.++++...++.|.+|+.+. ..+..+ .++...+..+++. ++++.+++... ++.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 4556789999999999888888899999997652 223222 1344578899995 56665555533 788
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
|.+|+. ++.....+.
T Consensus 102 i~~~d~-~g~~~~~~~---------------------------------------------------------------- 116 (286)
T 1q7f_A 102 IQIYNQ-YGQFVRKFG---------------------------------------------------------------- 116 (286)
T ss_dssp EEEECT-TSCEEEEEC----------------------------------------------------------------
T ss_pred EEEECC-CCcEEEEec----------------------------------------------------------------
Confidence 999883 322211110
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 497 (764)
......+..++++++|+++++...++.|.+|+.. +.....+.. ..+...+.+++++++++++++...++.
T Consensus 117 ---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~------~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 117 ---ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC------SKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp ---TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC------TTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred ---CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC------CCccCCcEEEEECCCCCEEEEECCCCE
Confidence 0122567899999999988887788999999964 444443321 134457899999999998888888999
Q ss_pred EEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCC-eEEEEEccCCeEEEEeecCCC--CeeEEEEcCCCcE
Q 004270 498 IKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDL-VIRLFDVVALRMVRKFEGHTD--RITDFCFSEDGKW 571 (764)
Q Consensus 498 v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~-~i~v~d~~~~~~~~~~~~h~~--~i~~l~~s~dg~~ 571 (764)
|++||.. ++.+..+... ..+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+|++
T Consensus 187 i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 187 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence 9999974 5555555443 5688999999999888888776 9999995 5667777765543 4779999999987
Q ss_pred EEEEeCCCcEEEEEcCccc
Q 004270 572 LLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 572 l~s~s~dg~i~iwd~~~~~ 590 (764)
+++ +.|++|++|++....
T Consensus 265 ~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 265 VLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEE-ETTTEEEEEECSCCC
T ss_pred EEE-CCCCeEEEEEccccc
Confidence 777 579999999986543
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=2e-15 Score=155.32 Aligned_cols=182 Identities=5% Similarity=-0.010 Sum_probs=130.5
Q ss_pred eEEEEEccCCCEEEEEecC---------------------------CcEEEEECcCCcccceecCccccccccccCcEEE
Q 004270 427 VKACTISACGNFAVLGTAG---------------------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 479 (764)
Q Consensus 427 v~~~~~s~~g~~l~~g~~~---------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 479 (764)
+..++|+|+|+.|+.++.+ ..|++|++.++.....+. . . .+..
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~--------~-~-~~~~ 175 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE--------K-P-RFSS 175 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE--------E-E-TTCE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec--------C-C-Cccc
Confidence 7889999999998887642 578999998887634443 2 3 6788
Q ss_pred EEECCCCCEEEEEeCCC-------eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC--------CeEEEEEc
Q 004270 480 VACDSTNTLMISAGYHG-------DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD--------LVIRLFDV 544 (764)
Q Consensus 480 l~~~~~~~~l~s~~~dg-------~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d--------~~i~v~d~ 544 (764)
++|+|+| +++++..++ ...+|.+.+++....... ..+..+ +|||+.|+.++.+ ..|.+||
T Consensus 176 ~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d- 250 (347)
T 2gop_A 176 GIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD- 250 (347)
T ss_dssp EEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-
T ss_pred ccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-
Confidence 9999999 777776542 334444445554433333 444443 9999999887754 3688888
Q ss_pred cCCeEEEEeecCCCCeeE-EEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeE
Q 004270 545 VALRMVRKFEGHTDRITD-FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGV 623 (764)
Q Consensus 545 ~~~~~~~~~~~h~~~i~~-l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i 623 (764)
+++......+|...+.. +.|+ || ++++++.++.+++| +.+++....+.....|.+++|+| .++++++.++...
T Consensus 251 -~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~ 324 (347)
T 2gop_A 251 -GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLR 324 (347)
T ss_dssp -SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCC
T ss_pred -CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChH
Confidence 66655555667778886 9999 88 88899999999999 88777655555555699999999 6777777666433
Q ss_pred EEEecc
Q 004270 624 YLWVNR 629 (764)
Q Consensus 624 ~lW~~~ 629 (764)
.+|..+
T Consensus 325 ~l~~~~ 330 (347)
T 2gop_A 325 ELFTWD 330 (347)
T ss_dssp EEEEES
T ss_pred HheEeC
Confidence 677654
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=4.9e-15 Score=150.33 Aligned_cols=280 Identities=9% Similarity=0.056 Sum_probs=197.6
Q ss_pred CCCcEEEEECCCceeeeeeec-----ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCee
Q 004270 245 SSGVISIWNLEKRRLQSVIRE-----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (764)
.++.|.++|.++++....+.. ........+.+. +++..++...++.|.+||..+. +.+..+. ....+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~----~~~~~i~-~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF----KEVGRIT-GFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC----CEEEEEE-CCSSEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc----EEEEEcC-CCCCCcE
Confidence 378999999999987765531 122345677774 4556666667899999988765 3444443 3467889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (764)
Q Consensus 320 i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (764)
++++++++..++...++.|.+||..+.+....+..+.
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~------------------------------------------- 125 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPD------------------------------------------- 125 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTT-------------------------------------------
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCC-------------------------------------------
Confidence 9999998544444478999999987655433221100
Q ss_pred ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECcCCcccceecCccccccccccCcE
Q 004270 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (764)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (764)
..........+++ +++.++++. .++.|.++|..+++....+. .....
T Consensus 126 --------------------~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~---------~g~~p 174 (328)
T 3dsm_A 126 --------------------MDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT---------IGIQP 174 (328)
T ss_dssp --------------------CCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE---------CSSCB
T ss_pred --------------------ccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE---------cCCCc
Confidence 0000113344555 455555555 48899999999988776654 12345
Q ss_pred EEEEECCCCCEEEEEeCC----------CeEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270 478 VGVACDSTNTLMISAGYH----------GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (764)
Q Consensus 478 ~~l~~~~~~~~l~s~~~d----------g~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~ 545 (764)
..++++++|++++++..+ +.|.++|..+++....+... .....++++|+++.+.++.. .|.+||..
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence 678999999977777655 78999999999888777653 47899999999999988765 89999999
Q ss_pred CCeEEEE--eecCCCCeeEEEEcC-CCcEEEEE----eCCCcEEEEEcCccceEEEEeeCCceEEEEEc
Q 004270 546 ALRMVRK--FEGHTDRITDFCFSE-DGKWLLSS----GMDGSLRIWDVILARQIDAIHVDVSITALSLS 607 (764)
Q Consensus 546 ~~~~~~~--~~~h~~~i~~l~~s~-dg~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~s 607 (764)
+++.... +..+......++++| ++++.++. ..++.|.+||.. |+.+..+........++|-
T Consensus 253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~ 320 (328)
T 3dsm_A 253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK 320 (328)
T ss_dssp CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence 8876421 222245688999999 56666665 578999999998 9999999876667777773
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=1.4e-14 Score=147.07 Aligned_cols=280 Identities=10% Similarity=-0.001 Sum_probs=194.8
Q ss_pred CCCcEEEEeCCCCeEEEEEc------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEE
Q 004270 159 QEGSLQLWNISTKKKLYEFK------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~f 232 (764)
.+++|.++|.++++....+. ........+++.. +++.++...++.|.+||..+++.+.++.. ......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEE
Confidence 37899999999998776541 1224467777753 44555555679999999999999988854 467899999
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc----cCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceee
Q 004270 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD----NAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 233 s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~ 307 (764)
+++++ +.++...++.|.+||..+++....+..+.. .....+++ .++.++++.. .++.|.++|..+. +..
T Consensus 92 ~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~----~~~ 165 (328)
T 3dsm_A 92 LSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD----KVV 165 (328)
T ss_dssp EETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT----EEE
T ss_pred eCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC----eEE
Confidence 99986 666655789999999999998877763221 14567777 4444444443 4889999987765 344
Q ss_pred EeccCCCCCCeeEEEecCCCEEEEEeCC----------CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270 308 RFRSGHSAPPLCIRFYANGRHILSAGQD----------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (764)
..... ...+..++++++|++++++..+ +.|.++|..+.+....+.
T Consensus 166 ~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~------------------------ 220 (328)
T 3dsm_A 166 DELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK------------------------ 220 (328)
T ss_dssp EEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE------------------------
T ss_pred EEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe------------------------
Confidence 43332 3346788999999877766544 567777765443221110
Q ss_pred EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (764)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~ 457 (764)
. .....+..++++|++++++++.. .|.+||..+++
T Consensus 221 -----------------------------------------~--~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 221 -----------------------------------------F--KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp -----------------------------------------C--CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred -----------------------------------------c--CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 0 00136789999999999998765 89999998887
Q ss_pred ccceecCccccccccccCcEEEEEECC-CCCEEEEE----eCCCeEEEEECCCCCeeeeEecCcceEEEEEe
Q 004270 458 SRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISA----GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH 524 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~----~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s 524 (764)
...... ...+.....+++++| ++.++++. ..++.|.+||.. ++.+..+........++|-
T Consensus 256 ~~~~~~------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~ 320 (328)
T 3dsm_A 256 VPVRPF------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK 320 (328)
T ss_dssp CCSSCS------BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred eeeeee------ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence 642111 012246789999999 55666665 578999999998 8888888776666666553
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=5e-15 Score=151.30 Aligned_cols=270 Identities=11% Similarity=0.017 Sum_probs=188.2
Q ss_pred CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 304 (764)
..|.+++|++++. .++..+.++.++.| .++....+. .+...+.+++|++++++++++..++.|.+|+.+..
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---- 76 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTI---TAEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---- 76 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEE---ECEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC----
T ss_pred cccceeeecCCcc-ceeEEeecccCccc---ccceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC----
Confidence 4578889999887 55555778899999 345555555 56667899999999998888888999999976544
Q ss_pred eeeEeccCCCCCCeeEEEecCCCEEEEEeCC----CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
........+...+.+++++++|+++++...+ +.|.+||..+......+
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~---------------------------- 128 (333)
T 2dg1_A 77 EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII---------------------------- 128 (333)
T ss_dssp CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE----------------------------
T ss_pred cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE----------------------------
Confidence 2222222456789999999999887777666 57888886543221000
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec------CCcEEEEECc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA------GGWIERFNLQ 454 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------~g~i~i~~~~ 454 (764)
.. ......+..++++|+|+++++... .+.|..++..
T Consensus 129 -------------------------------------~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 129 -------------------------------------ED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp -------------------------------------CS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred -------------------------------------cc-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence 00 012256889999999987776653 3567777766
Q ss_pred CCcccceecCccccccccccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCC-CCeeeeE------e--cCcceEEEEEe
Q 004270 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKG-RDLKSRW------E--VGCSLVKIVYH 524 (764)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~-~~~~~~~------~--~~~~i~~~~~s 524 (764)
++...... .+...+.+++++|+++.++ +.+.++.|.+|+..+ +.....+ . ....+..++++
T Consensus 171 ~~~~~~~~---------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 171 FRTVTPII---------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp SCCEEEEE---------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred CCEEEEee---------cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 54433221 2334578999999998654 445678999999964 3332211 1 12367889999
Q ss_pred ecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCC------CeeEEEEcCCCcEEEEEeCCC
Q 004270 525 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD------RITDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 525 ~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~------~i~~l~~s~dg~~l~s~s~dg 579 (764)
++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.++
T Consensus 242 ~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 242 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 99998888888899999998 4666777764433 689999999987776555543
No 185
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.69 E-value=3.1e-11 Score=138.32 Aligned_cols=511 Identities=10% Similarity=0.085 Sum_probs=314.7
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCC-----CCcceEEEEEeCC-eEEEEECCeEEEEecCc-eEEEeccccc---
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQ-----LPKKIRALASYRD-YTFAAYGNHIAVVKRAH-QVATWSRHSA--- 94 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-----~~~~I~~~~~~~~-~~~~a~g~~i~vw~~~~-~~~~~~~h~~--- 94 (764)
...++=.+.. .-+.-||-.+.+.....+. ....|.++..+++ ..++++.+.+..||..+ ....+.....
T Consensus 52 ~~G~lWigT~-~GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~~ 130 (795)
T 4a2l_A 52 KRGNMWFATY-DGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKH 130 (795)
T ss_dssp TTSCEEEEET-TEEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCEETTEE
T ss_pred CCCCEEEeec-CcCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCCEEEEeCCchheeCCCCCeEEeccccccCCC
Confidence 3445555554 4567788765444332111 2467999999988 57788887899999754 3333432211
Q ss_pred -ceEEEEEe-CCEEEEEecCCcEEEEEccCCcccccceeeEecCCcc-ccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCC
Q 004270 95 -KVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK 171 (764)
Q Consensus 95 -~v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~ 171 (764)
.|.++..+ ...|..++. +.+..||..+++...... ...... +..+...+++ .+.+++.++.|..||..++
T Consensus 131 ~~i~~i~~d~~g~lwi~t~-~gl~~~~~~~~~~~~~~~---~~~~~~~i~~i~~d~~g---~lwigt~~~Gl~~~~~~~~ 203 (795)
T 4a2l_A 131 LQVNGIEEISPEQLLISTP-EGLIMFDIKESKFIDDSF---STAMHKTIASTLYRQGD---QIYIGTSTDGLYTYSITQK 203 (795)
T ss_dssp CCCCEEEEEETTEEEEEET-TEEEEEETTTTEEECSSS---CHHHHTCCEEEEEEETT---EEEEEESSSCEEEEETTTC
T ss_pred ceEEEEEECCCCCEEEEEC-CceEEEECCCCEEEeccC---CCCCCcceEEEEECCCC---CEEEEECCCCEEEEeCCCC
Confidence 18888764 444555554 558899987654421100 000112 3444455555 5777887656999998777
Q ss_pred eEEEEE-cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc-------CCCCEEEEEEeeCCCCEEEEE
Q 004270 172 KKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS-------MRGAVTALAFSSDGQPLLASG 243 (764)
Q Consensus 172 ~~~~~~-~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~l~fs~d~~~~l~sg 243 (764)
+..... ..+...|.++...+++. |.+|+.++-+.+||..+++.. .+... ....|.++...++|. |..|
T Consensus 204 ~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWig 279 (795)
T 4a2l_A 204 TFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNR--LWIG 279 (795)
T ss_dssp CEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSC--EEEE
T ss_pred eEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCC--EEEE
Confidence 654321 12356788888888776 445665545889998766543 33221 135699999988887 4556
Q ss_pred eCCCcEEEEECCCceeeeeeec------ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec----cCC
Q 004270 244 ASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR----SGH 313 (764)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~----~~h 313 (764)
+.+ -|.+||..+++....... -....|.++...++|. |..|+.++-|..|+..... ....... .-.
T Consensus 280 t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~ 355 (795)
T 4a2l_A 280 TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLS 355 (795)
T ss_dssp ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS--SEEECCCTTSSSCS
T ss_pred eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCC
Confidence 655 589999887765433210 1235799999888886 4556666778888654331 1111110 012
Q ss_pred CCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccccee
Q 004270 314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (764)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (764)
...|.++...++|. |..|+.++-|..|+..++........
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~--------------------------------------- 395 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQ--------------------------------------- 395 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---------------------------------------
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecC---------------------------------------
Confidence 34588888887776 55567676688888654321110000
Q ss_pred EeeeCCceEEEEEccceeecceeecCC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccccc
Q 004270 394 TCHMDTAQAYVWRLQNFVLGEHILRPC-PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472 (764)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 472 (764)
. . ... ......|.+++..++|+.+.+|+.++-+.+|+..++........ . ...
T Consensus 396 ---------------~----~---~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-~---~~l 449 (795)
T 4a2l_A 396 ---------------E----D---ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-N---SQL 449 (795)
T ss_dssp ----------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-T---SCC
T ss_pred ---------------C----C---CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-C---CCc
Confidence 0 0 000 01125788999999998788888888899999987764332110 0 012
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-------CcceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (764)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~ 545 (764)
+...|.++..+++|++.+.. . +-+.+||..+++....... ...|.++...++|.+.+.. . +.+..||..
T Consensus 450 ~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~ 525 (795)
T 4a2l_A 450 VNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQE 525 (795)
T ss_dssp SCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEE
T ss_pred CCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCC
Confidence 34679999999988866554 4 4588899877654332211 2568888888888766654 4 568889988
Q ss_pred CCeEEEEee-------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee-----CCceEEEEEcCCCCeE
Q 004270 546 ALRMVRKFE-------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVL 613 (764)
Q Consensus 546 ~~~~~~~~~-------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~v~~l~~sp~g~~l 613 (764)
+++. .+. .+...|.++...++|++.++.. . -|..||..+++.. .+.. ...|.++...++|.+.
T Consensus 526 ~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 526 GLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLW 600 (795)
T ss_dssp TTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEE
T ss_pred CCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEE
Confidence 7765 332 1235689999999998666544 3 4888998766443 3322 2248899999999877
Q ss_pred EEEEeCCCeEEEEecc
Q 004270 614 ATAHVDQNGVYLWVNR 629 (764)
Q Consensus 614 at~~~d~~~i~lW~~~ 629 (764)
+++ +. +|..|+.+
T Consensus 601 i~t--~~-Gl~~~~~~ 613 (795)
T 4a2l_A 601 LST--NR-GISCFNPE 613 (795)
T ss_dssp EEE--TT-EEEEEETT
T ss_pred EEc--CC-ceEEEcCC
Confidence 666 33 58888764
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.69 E-value=2.2e-14 Score=144.40 Aligned_cols=304 Identities=10% Similarity=0.053 Sum_probs=208.8
Q ss_pred EEEeCCCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEE
Q 004270 143 CIMHPDTYLNKVIVGSQ-----EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHV 207 (764)
Q Consensus 143 ~~~~p~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------~dg~i~i 207 (764)
.+..|++ +.+++... ++.|.+.|..+++.+.++.....+ . ++++|||++++++. .++.|.+
T Consensus 38 ~~~~pd~--~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDA--RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCT--TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCC--CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 3456787 78888866 579999999999999999865555 4 99999999888775 3578999
Q ss_pred EEccCCceEEEEeccC------CCCEEEEEEeeCCCCEEEEEe--CCCcEEEEECCCceeeeeeecccccCeeEEEEecC
Q 004270 208 HNVRYDEELVTFTHSM------RGAVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (764)
Q Consensus 208 wd~~~~~~~~~~~~~~------~~~v~~l~fs~d~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~ 279 (764)
||..+++.+.++..+. ......++|+|||+ .++++. .++.|.++|+.+++.+.++... + . ...+...
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~-~~~~P~g 188 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C-YHIFPTA 188 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E-EEEEEEE
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c-ceeecCC
Confidence 9999999998886532 12456799999999 555554 3689999999999999988621 1 1 2223334
Q ss_pred CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCC----CCCCe-eEEEe-cCCCEEEEEeCCCcEEEEEeecccc--ccc
Q 004270 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH----SAPPL-CIRFY-ANGRHILSAGQDRAFRLFSVIQDQQ--SRE 351 (764)
Q Consensus 280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h----~~~v~-~i~~~-~~~~~l~s~~~dg~i~i~d~~~~~~--~~~ 351 (764)
.+.+++.+.||.+.+.++...... ......+ ..++. ...|. ++|++++ .+.+|.+.+.|+..... ...
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v---~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTP---EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCC---EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred CceeEEECCCCCEEEEECCCCCeE---EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence 456677778888888876552211 1111111 11221 24665 5775544 55688999999865432 111
Q ss_pred ccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEE
Q 004270 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (764)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (764)
+.......... . | .......++
T Consensus 265 ~~~~~~~~~~~-------------------------g----------------~-----------------~p~g~q~~a 286 (386)
T 3sjl_D 265 VEALTEAERAD-------------------------G----------------W-----------------RPGGWQQVA 286 (386)
T ss_dssp EESSCHHHHHT-------------------------T----------------E-----------------EECSSSCEE
T ss_pred eeccccccccc-------------------------c----------------c-----------------cCCCcceee
Confidence 10000000000 0 0 012333567
Q ss_pred EccCCCEEEEEec----------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEE-eCCCeEE
Q 004270 432 ISACGNFAVLGTA----------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISA-GYHGDIK 499 (764)
Q Consensus 432 ~s~~g~~l~~g~~----------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~~dg~v~ 499 (764)
++++++.+++... .+.|.++|+.+++.+..+. -...+.++++++|++ +|+++ ..++.|.
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~---------vg~~~~~lavs~D~~~~ly~tn~~~~~Vs 357 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---------MGHEIDSINVSQDEKPLLYALSTGDKTLY 357 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---------EEEEECEEEECSSSSCEEEEEETTTTEEE
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE---------CCCCcceEEECCCCCeEEEEEcCCCCeEE
Confidence 7899999888754 2579999999999988875 223678999999996 66665 4589999
Q ss_pred EEECCCCCeeeeEecCcceEEEEEeec
Q 004270 500 VWDFKGRDLKSRWEVGCSLVKIVYHRV 526 (764)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~~~~s~~ 526 (764)
++|..+++.+.++........|.+++|
T Consensus 358 ViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 358 IHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEECCCCcEEEEecCCCCCceeEECCc
Confidence 999999999999998888888888776
No 187
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.68 E-value=8.6e-11 Score=134.66 Aligned_cols=509 Identities=11% Similarity=0.081 Sum_probs=309.7
Q ss_pred CeEEEEEEeCCeEEEEecCCCeEEEecCCCCc---ceEEEEEeCCe-EEEEECCeEEEEecCce-EEEec-cc-ccc-eE
Q 004270 26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPK---KIRALASYRDY-TFAAYGNHIAVVKRAHQ-VATWS-RH-SAK-VN 97 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~I~~~~~~~~~-~~~a~g~~i~vw~~~~~-~~~~~-~h-~~~-v~ 97 (764)
...+-+++. +-+..||..+.+.......... .|.+++..+++ .++++...|..|+..+. ...+. ++ ... |.
T Consensus 98 ~g~lWigT~-~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~~~~~~~~~~i~ 176 (795)
T 4a2l_A 98 QGRVWIGTR-DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIA 176 (795)
T ss_dssp TSCEEEEES-SCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEETTEEEEEETTTTEEECSSSCHHHHTCCE
T ss_pred CCCEEEEeC-CchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEECCceEEEECCCCEEEeccCCCCCCcceE
Confidence 334444444 4589999988776554321111 18899888775 77888877999997543 22222 11 123 88
Q ss_pred EEEEe-CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004270 98 LLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176 (764)
Q Consensus 98 ~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 176 (764)
++..+ ...|..++.++.+..|+..+++.... .. ......+..+...+++ .+.+|+.++-|..||..+++....
T Consensus 177 ~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~--~~-~~~~~~i~~i~~d~~g---~lwigt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 177 STLYRQGDQIYIGTSTDGLYTYSITQKTFEKV--IP-ILGTKQIQAILQQSPT---RIWVATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp EEEEEETTEEEEEESSSCEEEEETTTCCEEEC--C-----CCCEEEEEEEETT---EEEEEEBSSCEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEeCCCCeEEEe--cC-CCCCCeeEEEEEcCCC---CEEEEECCCCeEEEeCCCCeEEEe
Confidence 88774 45666677666699999877654211 00 0112333344444544 677787665599999887765443
Q ss_pred EcC-------CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc-------CCCCEEEEEEeeCCCCEEEE
Q 004270 177 FKG-------WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS-------MRGAVTALAFSSDGQPLLAS 242 (764)
Q Consensus 177 ~~~-------h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~l~fs~d~~~~l~s 242 (764)
... ....|.++...++|.+ .+|+.+ -|.+||..+++.. .+... ....|.++...++|. |..
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWi 325 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQGG--MWL 325 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEECTTSC--EEE
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCcC--EEE
Confidence 221 1457999999988864 455655 5889998766543 33211 135799999999887 667
Q ss_pred EeCCCcEEEEECCCceeeeeee-----cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec------c
Q 004270 243 GASSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR------S 311 (764)
Q Consensus 243 g~~dg~i~iwd~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~------~ 311 (764)
|+.++-|..|+..++....... .-....|.++...+++. |..|+.++-|..|+.... ........ .
T Consensus 326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~ 402 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ--RFTSYTLQEDESARG 402 (795)
T ss_dssp EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC--CEEEECCC------C
T ss_pred EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC--cEEEEecCCCCcccC
Confidence 8877889999876654322211 01235688998888776 455666767888865433 11111100 0
Q ss_pred CCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (764)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
.....|.++...++++.|..|+.++-|..++..+++.... ..
T Consensus 403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~-~~------------------------------------- 444 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF-NQ------------------------------------- 444 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE-CT-------------------------------------
T ss_pred CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe-ec-------------------------------------
Confidence 1235688888888887566677766688888654321110 00
Q ss_pred eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (764)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 471 (764)
. ........|.++...++|++.+ |+. +.+.+|+..++........ .....
T Consensus 445 ----------------~----------~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~--~~~~~ 494 (795)
T 4a2l_A 445 ----------------R----------NSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKE--KDGTP 494 (795)
T ss_dssp ----------------T----------TSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBC--TTCCB
T ss_pred ----------------C----------CCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEcccc--ccccc
Confidence 0 0001225788888888887554 444 4588899877654322110 00001
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe--------cCcceEEEEEeecCCEEEEEeCCCeEEEEE
Q 004270 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE--------VGCSLVKIVYHRVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d 543 (764)
.....|.++..+++|++.+... +-|..||..+++. .+. ....|.++...++|.+.+.. .+ -+..||
T Consensus 495 ~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d 568 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFN 568 (795)
T ss_dssp CCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEE
T ss_pred cCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeEC
Confidence 2346799999999998666554 5578888876654 222 12467888888888765544 44 688899
Q ss_pred ccCCeEEEEee---c-CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-----c--eEEEEEcCCCCe
Q 004270 544 VVALRMVRKFE---G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-----S--ITALSLSPNMDV 612 (764)
Q Consensus 544 ~~~~~~~~~~~---~-h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~--v~~l~~sp~g~~ 612 (764)
..+++... +. + ....|.++...++|++.+++ . +-|..||..+++ +..+.... . ..++...++|.+
T Consensus 569 ~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~l 644 (795)
T 4a2l_A 569 EKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEK-FRNFTESDGLQSNQFNTASYCRTSVGQM 644 (795)
T ss_dssp TTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTE-EEEECGGGTCSCSCEEEEEEEECTTSCE
T ss_pred CCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCc-EEEcCCcCCCccccCccCceeECCCCeE
Confidence 88775443 32 1 13468899999999877755 3 448889987654 34443222 1 256777888876
Q ss_pred EEEEEeCCCeEEEEeccc
Q 004270 613 LATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 613 lat~~~d~~~i~lW~~~~ 630 (764)
++. +.+ ++..++.+.
T Consensus 645 ~~g-~~~--Gl~~~~p~~ 659 (795)
T 4a2l_A 645 YFG-GIN--GITTFRPEL 659 (795)
T ss_dssp EEE-ETT--EEEEECGGG
T ss_pred EEe-cCC--ceEEEcHHH
Confidence 654 444 377776543
No 188
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.68 E-value=7.2e-14 Score=140.70 Aligned_cols=307 Identities=12% Similarity=0.068 Sum_probs=207.5
Q ss_pred EEEcCCCCEEEEEEc-----CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe---------CCCcEEEE
Q 004270 187 CVSSPALDVVAVGCS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIW 252 (764)
Q Consensus 187 ~~~sp~~~~la~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~---------~dg~i~iw 252 (764)
....|+++.+.+... ++.|.+.|..+++.+.++..+ ..+ . ++++|||+.++++.. .++.|.+|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 456789999888876 679999999999999999876 444 4 999999995444432 36789999
Q ss_pred ECCCceeeeeeeccc------ccCeeEEEEecCCCEEEEEcC--CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270 253 NLEKRRLQSVIREAH------DNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (764)
Q Consensus 253 d~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (764)
|..+++.+..+..+. ......+.|+|||++++.+.. ++.|.++|..+. +.+..+.... ....+..
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~----~vv~tI~v~g---~~~~~P~ 187 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPD---CYHIFPT 187 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCS---EEEEEEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC----cEEEEEECCC---cceeecC
Confidence 999999988886322 225678999999998888764 689999988776 4554442211 1222333
Q ss_pred CCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEE
Q 004270 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (764)
Q Consensus 325 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (764)
..+.+++.+.||.+.+.++........ ..
T Consensus 188 g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~-------------------------------------------------- 216 (386)
T 3sjl_D 188 APDTFFMHCRDGSLAKVAFGTEGTPEI-TH-------------------------------------------------- 216 (386)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEE-EE--------------------------------------------------
T ss_pred CCceeEEECCCCCEEEEECCCCCeEEE-ee--------------------------------------------------
Confidence 556777888899988888765221100 00
Q ss_pred EEccceeecceeecCCCCCCCCe-EEEEE-ccCCCEEEEEecCCcEEEEECcCCcc--cceecCccc--cccccccCcEE
Q 004270 405 WRLQNFVLGEHILRPCPENPTAV-KACTI-SACGNFAVLGTAGGWIERFNLQSGIS--RGSYLDMSE--RSNYAHNGEVV 478 (764)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v-~~~~~-s~~g~~l~~g~~~g~i~i~~~~~~~~--~~~~~~~~~--~~~~~h~~~v~ 478 (764)
...+.. ....+ ....| .++|++++ .+.+|.|+++|+.++.. ...+..... ....-......
T Consensus 217 ---------~~~~~~---~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q 283 (386)
T 3sjl_D 217 ---------TEVFHP---EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 283 (386)
T ss_dssp ---------CCCCSC---TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred ---------cceecc---ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence 000000 00111 11244 36775555 55689999999976642 221110000 00001122334
Q ss_pred EEEECCCCCEEEEEeC----------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCC-EEEEEe-CCCeEEEEEccC
Q 004270 479 GVACDSTNTLMISAGY----------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFDVVA 546 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~d~~i~v~d~~~ 546 (764)
.++++++++.++.... ...|.+.|+.+++.+..+.....+..+++++|++ +|++.. .++.|.++|..+
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 5777899888877643 2579999999999999999998999999999997 666654 489999999999
Q ss_pred CeEEEEeecCCCCeeEEEEcCC
Q 004270 547 LRMVRKFEGHTDRITDFCFSED 568 (764)
Q Consensus 547 ~~~~~~~~~h~~~i~~l~~s~d 568 (764)
++.++++..- +.-+.|.+++|
T Consensus 364 ~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 364 GEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CCEEEEECCC-CSSCCEEEECC
T ss_pred CcEEEEecCC-CCCceeEECCc
Confidence 9999998743 34466777776
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=2.1e-14 Score=162.48 Aligned_cols=279 Identities=7% Similarity=-0.031 Sum_probs=189.7
Q ss_pred cCCCEEEEEcCC-C--cEEEEEecCCCCCceeeEec----cCCCCCCeeEEEecCCCEEEEEeCCC-----cEEEEEeec
Q 004270 278 ANEPVLMSASAD-N--SIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSAGQDR-----AFRLFSVIQ 345 (764)
Q Consensus 278 ~~~~~l~s~~~d-~--~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~~~dg-----~i~i~d~~~ 345 (764)
|+|++++....+ + .-.+|..+...+..+.+... .+|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 788877655433 2 23567766544444433211 23444678899999999998766433 788888866
Q ss_pred ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (764)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (764)
++...... . ..
T Consensus 161 g~~~~~~~----------------------------------------------------------------~-----~~ 171 (710)
T 2xdw_A 161 AKELPDVL----------------------------------------------------------------E-----RV 171 (710)
T ss_dssp TEEEEEEE----------------------------------------------------------------E-----EE
T ss_pred CCCCcccc----------------------------------------------------------------c-----Cc
Confidence 54322100 0 01
Q ss_pred CeEEEEEccCCCEEEEEecCCc----------------EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE
Q 004270 426 AVKACTISACGNFAVLGTAGGW----------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~~g~----------------i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 489 (764)
.+..++|+|||+.|+.+..++. |++|++.++.....+.. ....|...+.++.|+|||++|
T Consensus 172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~----~~~~~~~~~~~~~~SpDg~~l 247 (710)
T 2xdw_A 172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA----EFPDEPKWMGGAELSDDGRYV 247 (710)
T ss_dssp CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE----CCTTCTTCEEEEEECTTSCEE
T ss_pred ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe----ccCCCCeEEEEEEEcCCCCEE
Confidence 2456899999999999988765 99999988764322210 001355668899999999999
Q ss_pred EEEeC-----CCeEEEEECCC------CC-eeeeEecC-cceEEEEEeecCCEEEEEeCC----CeEEEEEccCCe--EE
Q 004270 490 ISAGY-----HGDIKVWDFKG------RD-LKSRWEVG-CSLVKIVYHRVNGLLATVADD----LVIRLFDVVALR--MV 550 (764)
Q Consensus 490 ~s~~~-----dg~v~iwd~~~------~~-~~~~~~~~-~~i~~~~~s~~~~~la~~~~d----~~i~v~d~~~~~--~~ 550 (764)
+.++. +..|++||+.+ +. ....+..+ ..+. ..++++|+.|+..+.. +.|.+||+.++. ..
T Consensus 248 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 248 LLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp EEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred EEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 88765 56899999986 43 34444443 3343 3589999988877653 369999998774 23
Q ss_pred EEeecCCC--CeeEEEEcCCCcEEEEEeCCCc--EEEEEcCccceEEEEeeCC-ceEEEEEcCCCCeEEEEEeCC---Ce
Q 004270 551 RKFEGHTD--RITDFCFSEDGKWLLSSGMDGS--LRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQ---NG 622 (764)
Q Consensus 551 ~~~~~h~~--~i~~l~~s~dg~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~lat~~~d~---~~ 622 (764)
..+..|.. .+..++|++++.++++...|+. |.+||+.+|+.+..+..+. .+.+++++|++..++....+. ..
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 406 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI 406 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence 45555544 6888999988888888888884 6667877888877777654 388999999998776554331 26
Q ss_pred EEEEeccc
Q 004270 623 VYLWVNRC 630 (764)
Q Consensus 623 i~lW~~~~ 630 (764)
|++|++.+
T Consensus 407 i~~~d~~t 414 (710)
T 2xdw_A 407 IYHCDLTK 414 (710)
T ss_dssp EEEEETTS
T ss_pred EEEEECCC
Confidence 99999753
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=2.7e-14 Score=161.68 Aligned_cols=284 Identities=13% Similarity=0.089 Sum_probs=180.4
Q ss_pred CCCCEEEEEEcCC-----eEEEEEccCCceEEEEec-----cCCCCEEEEEEeeCCCCEEEEEeC-CC----cEEEEECC
Q 004270 191 PALDVVAVGCSDG-----KIHVHNVRYDEELVTFTH-----SMRGAVTALAFSSDGQPLLASGAS-SG----VISIWNLE 255 (764)
Q Consensus 191 p~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~-----~~~~~v~~l~fs~d~~~~l~sg~~-dg----~i~iwd~~ 255 (764)
|+|++++....++ .+.+.+...++....+.. .+...+..++|||||+ +|+.+.. +| .|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECC
Confidence 7788777654331 334444434443222221 1223588999999999 6665543 33 89999999
Q ss_pred CceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc----------------EEEEEecCCCCCceeeEeccCCCCCCee
Q 004270 256 KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS----------------IKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (764)
Q Consensus 256 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~----------------i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (764)
+++...... ....+..++|+|||+.|+.++.++. |++|++.+......++.....|...+..
T Consensus 160 tg~~~~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 160 GAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCcccc--cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 998776443 2233778999999999999888766 8889886553222344343445666789
Q ss_pred EEEecCCCEEEEEeC-----CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeE
Q 004270 320 IRFYANGRHILSAGQ-----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (764)
Q Consensus 320 i~~~~~~~~l~s~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (764)
+.|+|||++|+..+. +..+++||+.+... ...
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~~----------------------------------------- 274 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN--GIT----------------------------------------- 274 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS--SSC-----------------------------------------
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECccccc--ccC-----------------------------------------
Confidence 999999999987764 34556665533000 000
Q ss_pred eeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc-ccceecCccccccccc
Q 004270 395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAH 473 (764)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h 473 (764)
+. ....+. .+
T Consensus 275 -------------------------------------------------------------~~~~~~~l~--------~~ 285 (710)
T 2xdw_A 275 -------------------------------------------------------------GILKWVKLI--------DN 285 (710)
T ss_dssp -------------------------------------------------------------SSCCCEEEE--------CS
T ss_pred -------------------------------------------------------------CccceEEee--------CC
Confidence 00 000000 12
Q ss_pred cCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCCCe--eeeE-ecCc--ceEEEEEeecCCEEEEEeCCCe--EEEE
Q 004270 474 NGEVVGVACDSTNTLMISAGY----HGDIKVWDFKGRDL--KSRW-EVGC--SLVKIVYHRVNGLLATVADDLV--IRLF 542 (764)
Q Consensus 474 ~~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~~--~~~~-~~~~--~i~~~~~s~~~~~la~~~~d~~--i~v~ 542 (764)
...+.. .|+++|+.|+..+. .+.|.+||+.++.. ...+ .+.. .+..+++++++.++++...++. |++|
T Consensus 286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (710)
T ss_dssp SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence 222222 35566666555443 23588888877642 2333 3322 5778888877778888888884 5667
Q ss_pred EccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE-e---CCCcEEEEEcCccc
Q 004270 543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS-G---MDGSLRIWDVILAR 590 (764)
Q Consensus 543 d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~-s---~dg~i~iwd~~~~~ 590 (764)
|+.+++.+..+..+.+.+..++++|+++.++.. + ..++|+.||+.+++
T Consensus 365 ~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 776788888888888889999999999766633 2 35789999999887
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=5.2e-13 Score=133.83 Aligned_cols=280 Identities=13% Similarity=0.085 Sum_probs=196.4
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
...+.++++.++|. ++++...++.|.+||.. ++........+...+.++++.+++.+.++...++.|..|+.+ +.
T Consensus 14 ~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~ 88 (299)
T 2z2n_A 14 DTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK---GI 88 (299)
T ss_dssp SCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT---SC
T ss_pred CCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC---Cc
Confidence 45799999999998 66665557899999988 554433222345679999999999988887778888888654 21
Q ss_pred ceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (764)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (764)
.... ........+..+++.++|+.+++...++.+..|+. ++... .+
T Consensus 89 ~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~------------------------------- 134 (299)
T 2z2n_A 89 IKEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY------------------------------- 134 (299)
T ss_dssp EEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE-------------------------------
T ss_pred EEEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee-------------------------------
Confidence 1111 12234567889999999988777777788888876 22111 00
Q ss_pred cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec
Q 004270 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463 (764)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~ 463 (764)
. .......+..++++++|+..++...++.|..|+. ++.......
T Consensus 135 ----------------------~-------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 178 (299)
T 2z2n_A 135 ----------------------E-------------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI 178 (299)
T ss_dssp ----------------------E-------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred ----------------------c-------------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC
Confidence 0 0011256789999999988887777889999998 655443211
Q ss_pred CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEE
Q 004270 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIR 540 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~ 540 (764)
..+...+.++++++++++.++...++.|.+||. +++... +... ..+..++++++|+++++...++.|.
T Consensus 179 -------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 249 (299)
T 2z2n_A 179 -------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIG 249 (299)
T ss_dssp -------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred -------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEE
Confidence 134456889999999997777767889999998 665433 3222 6788999999998777666789999
Q ss_pred EEEccCCeEEEE-eecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc
Q 004270 541 LFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (764)
Q Consensus 541 v~d~~~~~~~~~-~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~ 590 (764)
.||. +++.... +..+...+.++++ ++|+++++.+ .+.|..++..+++
T Consensus 250 ~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 250 RLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 9998 4543322 3345577999999 9998777665 5667778876553
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.66 E-value=3.3e-14 Score=142.39 Aligned_cols=238 Identities=8% Similarity=-0.019 Sum_probs=170.5
Q ss_pred cCCCCCCeeEEEecCCC-EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccc
Q 004270 311 SGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (764)
Q Consensus 311 ~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (764)
..+.....+++|+|+++ .++++..++.|..|+...+ ...+
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~------------------------------------- 64 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE------------------------------------- 64 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-------------------------------------
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-------------------------------------
Confidence 34556678999999998 6777778889999987543 1111
Q ss_pred cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc
Q 004270 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (764)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (764)
. .+...+.+++++++|+++++...++.|.+||..++.........
T Consensus 65 ----------------~---------------~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~---- 109 (296)
T 3e5z_A 65 ----------------M---------------HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF---- 109 (296)
T ss_dssp ----------------E---------------SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE----
T ss_pred ----------------E---------------CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc----
Confidence 0 12256889999999998877777789999999887654332100
Q ss_pred cccccCcEEEEEECCCCCEEEEEeC-----------------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEE
Q 004270 470 NYAHNGEVVGVACDSTNTLMISAGY-----------------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532 (764)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 532 (764)
.......+..++++|+|+++++.+. .+.|..++.. ++.............++|+|+++.+++
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~ 188 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVS 188 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEE
Confidence 0012235678999999998887431 2355555544 444333334466789999999999877
Q ss_pred EeCCCeEEEEEcc-CCeE---EEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEE-c
Q 004270 533 VADDLVIRLFDVV-ALRM---VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL-S 607 (764)
Q Consensus 533 ~~~d~~i~v~d~~-~~~~---~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~-s 607 (764)
.+.++.|++|++. +++. ...+..+...+..++++++|+++++. ++.|.+||.. |+.+..+..+..+++++| +
T Consensus 189 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~ 265 (296)
T 3e5z_A 189 DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGG 265 (296)
T ss_dssp ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEES
T ss_pred eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEEC
Confidence 7778999999997 5554 33444455667899999999977766 7889999976 888888887666999999 6
Q ss_pred CCCCeEEEEEeCCCeEEEEec
Q 004270 608 PNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 608 p~g~~lat~~~d~~~i~lW~~ 628 (764)
|+++.|.+++.++ ++-++.
T Consensus 266 ~d~~~L~v~t~~~--l~~~~~ 284 (296)
T 3e5z_A 266 PEGRTLYMTVSTE--FWSIET 284 (296)
T ss_dssp TTSCEEEEEETTE--EEEEEC
T ss_pred CCCCEEEEEcCCe--EEEEEc
Confidence 8999999888764 544443
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=1e-14 Score=164.52 Aligned_cols=278 Identities=7% Similarity=-0.009 Sum_probs=188.9
Q ss_pred ecCCCEEEEEcCCC---cEEEEEecCCCCCceeeEec----cCCCCCCeeEEEecCCCEEEEE-----eCCCcEEEEEee
Q 004270 277 FANEPVLMSASADN---SIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSA-----GQDRAFRLFSVI 344 (764)
Q Consensus 277 ~~~~~~l~s~~~d~---~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~-----~~dg~i~i~d~~ 344 (764)
+|+|.+++....++ .-.+|..+...+..+.+... .+|...+..++|+|||++|+.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47888887766544 46778776554444444322 2455678899999999999843 334678999887
Q ss_pred cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (764)
+++...... + ..
T Consensus 156 tg~~~~~~~---------------------------------------------------------------~-----~~ 167 (695)
T 2bkl_A 156 SGEWSKVDV---------------------------------------------------------------I-----EG 167 (695)
T ss_dssp TCCBCSSCC---------------------------------------------------------------B-----SC
T ss_pred CCCCcCCcc---------------------------------------------------------------c-----Cc
Confidence 654320000 0 00
Q ss_pred CCeEEEEEccCCCEEEEEecCCc-------------EEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGW-------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~-------------i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (764)
.....++|+|||+.|+.++.+.. |++|++.++.....+.. ....|...+.++.|+|+|++|+.
T Consensus 168 ~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~----~~~~~~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 168 GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH----ERTGDPTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE----CCCCCTTCEEEEEECTTSCCEEE
T ss_pred ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE----ecCCCCEEEEEEEECCCCCEEEE
Confidence 11256899999999999988765 99999998764322110 01245567899999999999988
Q ss_pred EeCCC----eEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeC----CCeEEEEEccCCeE---EEEeecC-CCC
Q 004270 492 AGYHG----DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRM---VRKFEGH-TDR 559 (764)
Q Consensus 492 ~~~dg----~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~----d~~i~v~d~~~~~~---~~~~~~h-~~~ 559 (764)
++.++ .|.+|+..+++..........+....+ ++|+ +++.+. ++.|.+||+.+++. ...+..+ ...
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 321 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS 321 (695)
T ss_dssp EEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred EEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence 87666 677777666665555555555566655 6777 555443 58999999987753 3333333 456
Q ss_pred eeEEEEcCCCcEEEEEeCCCcEEEEEcC-ccceEEEEeeC--CceEEEEEcCCCCeEEEEEeC----CCeEEEEeccc
Q 004270 560 ITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVD----QNGVYLWVNRC 630 (764)
Q Consensus 560 i~~l~~s~dg~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d----~~~i~lW~~~~ 630 (764)
+..++|+ ++.++++...|+..++|.+. +|+.+..+..+ ..+..++++|+++.|+....+ + .|++|++.+
T Consensus 322 l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~-~v~~~d~~~ 397 (695)
T 2bkl_A 322 LLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR-QIYKTSVST 397 (695)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE-EEEEEETTT
T ss_pred EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC-EEEEEECCC
Confidence 8889998 77888899999998888665 46666666554 348889999999877755433 3 599999753
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=1.1e-12 Score=131.34 Aligned_cols=283 Identities=12% Similarity=0.058 Sum_probs=193.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe-ccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 178 ~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
..+...+.+++++++|++.++...++.|.+||.. ++.. .+. ......+.++++.++|. ++++...++.|..||..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK- 86 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-
Confidence 4456789999999999877766667899999988 5533 333 22346799999999998 77766667889999986
Q ss_pred ceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 257 RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 257 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
++............+.++++.+++.+.++...++.|..|+. . +... ......+...+..+++.++|+..++...++
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~--g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 162 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D--GKIR-EYELPNKGSYPSFITLGSDNALWFTENQNN 162 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T--CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C--CCEE-EecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence 43322111124557899999999988888777888888865 2 2111 112233456788999999998777766677
Q ss_pred cEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeeccee
Q 004270 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (764)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (764)
.|..|+. ++.... + .
T Consensus 163 ~i~~~~~-~g~~~~-~-----------------------------------------------------~---------- 177 (299)
T 2z2n_A 163 AIGRITE-SGDITE-F-----------------------------------------------------K---------- 177 (299)
T ss_dssp EEEEECT-TCCEEE-E-----------------------------------------------------E----------
T ss_pred EEEEEcC-CCcEEE-e-----------------------------------------------------e----------
Confidence 8888886 322110 0 0
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC
Q 004270 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (764)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (764)
.......+..++++++|++.++...++.|.+|+. ++.... +. ...+...+.+++++++|+++++...++
T Consensus 178 ---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~------~~~~~~~~~~i~~~~~g~l~v~~~~~~ 246 (299)
T 2z2n_A 178 ---IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK------IPTPNARPHAITAGAGIDLWFTEWGAN 246 (299)
T ss_dssp ---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE------CSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred ---CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE------CCCCCCCceeEEECCCCCEEEeccCCc
Confidence 0011256788999999997777667889999999 665432 21 123556789999999999777766788
Q ss_pred eEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCe
Q 004270 497 DIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~ 548 (764)
.|..||. +++ +..+.. ...+.++++ +++.+.++.. .+.+..++.++++
T Consensus 247 ~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 247 KIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred eEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 9999998 443 333332 257888999 8777666554 6777777776543
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.64 E-value=1.2e-12 Score=134.25 Aligned_cols=280 Identities=12% Similarity=0.006 Sum_probs=183.3
Q ss_pred EEeeCCCCEEEEEeC--CC---cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CCCcEEEE
Q 004270 231 AFSSDGQPLLASGAS--SG---VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMW 295 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~--dg---~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~i~vw 295 (764)
...|+++ .+++... .. .|.++|..+++.+..+..+ ..+ .++++||+++++.+. .++.|.+|
T Consensus 27 ~~~~~~~-~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 27 APGADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cCCCCCC-EEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3446776 4555442 22 8899999999998887733 233 999999999988875 36789999
Q ss_pred EecCCCCCceeeEeccC-------CCCCCeeEEEecCCCEEEEEeC--CCcEEEEEeeccccccc-ccchhhhHHHhhcc
Q 004270 296 IFDTTDGDPRLLRFRSG-------HSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSRE-LSQRHVAKRARKLK 365 (764)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-------h~~~v~~i~~~~~~~~l~s~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~ 365 (764)
|..+.. .+....- +......++++|||++|+.+.. ++.|.++| .+++.... +..
T Consensus 103 D~~t~~----~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~----------- 166 (373)
T 2mad_H 103 DPVTFL----PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS----------- 166 (373)
T ss_pred ECCCCc----EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----------
Confidence 886542 2222111 1234668999999999998874 47799999 76654332 211
Q ss_pred chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEec
Q 004270 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTA 444 (764)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~ 444 (764)
..++.+.|++ +.+++.+.
T Consensus 167 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 185 (373)
T 2mad_H 167 -------------------------------------------------------------PTCYHIHPGAPSTFYLLCA 185 (373)
T ss_pred -------------------------------------------------------------CceEEEEeCCCceEEEEcC
Confidence 0113334444 34455566
Q ss_pred CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--eeeeEec--------
Q 004270 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEV-------- 514 (764)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~-------- 514 (764)
+|.+.+++. ++........... ..+...-.....+.+++..++..+.++.+.+.|+.+.. .+..+..
T Consensus 186 dg~~~~vd~-~g~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~ 262 (373)
T 2mad_H 186 QGGLAKTDH-AGGAAGAGLVGAM--LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD 262 (373)
T ss_pred CCCEEEEEC-CCcEEEEEecccc--ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence 788888888 6655422110000 00111112234556666555545577899999987653 2233321
Q ss_pred ---CcceEEEEEeecCCEEEEEeC----------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCc-EEEEEe-CCC
Q 004270 515 ---GCSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSG-MDG 579 (764)
Q Consensus 515 ---~~~i~~~~~s~~~~~la~~~~----------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~s~s-~dg 579 (764)
......++++|+++.+.++.. ++.|.++|..+++.+.++... .....++|+|||+ .++++. .++
T Consensus 263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCC
Confidence 123445789999998887654 358999999999999998643 3578999999999 677776 589
Q ss_pred cEEEEEcCccceEEEE
Q 004270 580 SLRIWDVILARQIDAI 595 (764)
Q Consensus 580 ~i~iwd~~~~~~~~~~ 595 (764)
.|.++|+.+++.+..+
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999999884
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.64 E-value=9.5e-14 Score=138.99 Aligned_cols=253 Identities=11% Similarity=0.084 Sum_probs=174.9
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~ 250 (764)
..+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+ ...+.+++++++|+ ++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~-~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP-SHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS-CSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC-CCCcceeeECCCCc-EEEEecCCCeEE
Confidence 33444555566788999999998 7788888999999999877 5555544 57799999999998 777766678999
Q ss_pred EEECCCceeeeeeec---ccccCeeEEEEecCCCEEEEEcCC---------------CcEEEEEecCCCCCceeeEeccC
Q 004270 251 IWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSASAD---------------NSIKMWIFDTTDGDPRLLRFRSG 312 (764)
Q Consensus 251 iwd~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~ 312 (764)
+||..+++....... .....+..+++.|+|+++++.+.. +.-.+|.++.. +. ......
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~ 169 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIR 169 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEEC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeec
Confidence 999988875544321 112356789999999988873211 12367766654 22 222345
Q ss_pred CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccc-ccccchhhhHHHhhccchhhhhccCceeEeeecccccccccc
Q 004270 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (764)
Q Consensus 313 h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (764)
+...+..++|+|+++.+++.+.++.|.+|++...... ..
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~---------------------------------------- 209 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ---------------------------------------- 209 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE----------------------------------------
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC----------------------------------------
Confidence 6667789999999998877777889999998521110 00
Q ss_pred eeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccc
Q 004270 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (764)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 471 (764)
...+ ......+..++++++|++.++. ++.|.+|+.. ++....+.
T Consensus 210 ----------------------~~~~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-------- 253 (296)
T 3e5z_A 210 ----------------------GVHF---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-------- 253 (296)
T ss_dssp ----------------------EEEE---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE--------
T ss_pred ----------------------CeEe---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE--------
Confidence 0000 0112445678999999866655 8899999987 66655553
Q ss_pred cccCcEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCeee
Q 004270 472 AHNGEVVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (764)
Q Consensus 472 ~h~~~v~~l~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 510 (764)
.+.. +.+++| .++++.|+.++.++ +..++.++.++.+
T Consensus 254 ~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 254 TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLEH 291 (296)
T ss_dssp CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCCC
T ss_pred CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccccc
Confidence 4555 889999 68988888888764 4455666655443
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.63 E-value=2e-12 Score=132.71 Aligned_cols=286 Identities=6% Similarity=-0.069 Sum_probs=190.3
Q ss_pred EeCCEEEEEec--CC---cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe----------CCCcEEE
Q 004270 101 LFGEHILSIDI--DG---NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS----------QEGSLQL 165 (764)
Q Consensus 101 ~~g~~l~s~~~--dg---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~----------~dg~i~i 165 (764)
++++++++... .+ +|.++|..+++. +.++.... ...++++|++ ++++++. .++.|.+
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~----~~~i~~g~--~p~i~~spDg--~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSI----LGHVNGGF--LPNPVAAHSG--SEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeE----EEEecCCC--CCCeEECCCC--CEEEEEeccccccccCCCCCeEEE
Confidence 46777777764 22 789999998887 55555433 3388999999 7888886 3678999
Q ss_pred EeCCCCeEEEEEcCC-------CCCeEEEEEcCCCCEEEEEEc--CCeEEEEEccCCceEEE-EeccCCCCEEEEEEeeC
Q 004270 166 WNISTKKKLYEFKGW-------GSSISSCVSSPALDVVAVGCS--DGKIHVHNVRYDEELVT-FTHSMRGAVTALAFSSD 235 (764)
Q Consensus 166 wd~~~~~~~~~~~~h-------~~~i~~~~~sp~~~~la~g~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~fs~d 235 (764)
||..+++.+.++... ...-..++++|||++|+++.. ++.|.++| .+++.+.. +... + ++.+.|+
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--~---~~~~~~~ 175 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--T---CYHIHPG 175 (373)
T ss_pred EECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--c---eEEEEeC
Confidence 999999988877532 123458999999999999874 47899999 99998877 6543 2 2556677
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeec----ccccC-eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEec
Q 004270 236 GQPLLASGASSGVISIWNLEKRRLQSVIRE----AHDNA-IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310 (764)
Q Consensus 236 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~h~~~-v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 310 (764)
+...+++.+.||.+.++|. +++....... ....+ .....+.+++..++..+.++.+.+.|+.... ...+..+
T Consensus 176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~--~~v~~~~ 252 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG--ATNKAPI 252 (373)
T ss_pred CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc--ceEeeee
Confidence 7657777888999999999 8776643220 01111 1234566666555544566777777654321 1111111
Q ss_pred cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
.-.........|.|
T Consensus 253 ~~~~~~~~~~~~~p------------------------------------------------------------------ 266 (373)
T 2mad_H 253 DALSGGRKADTWRP------------------------------------------------------------------ 266 (373)
T ss_pred eecCCcccccceec------------------------------------------------------------------
Confidence 00000000111111
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec----------CCcEEEEECcCCcccc
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----------GGWIERFNLQSGISRG 460 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----------~g~i~i~~~~~~~~~~ 460 (764)
.....++++++++.++++.. .+.|.++|..+++...
T Consensus 267 ----------------------------------~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 267 ----------------------------------GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred ----------------------------------CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 22233456666666666543 3579999999988877
Q ss_pred eecCccccccccccCcEEEEEECCCCC-EEEEEe-CCCeEEEEECCCCCeeeeE
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~ 512 (764)
.+. -.....+++|+|||+ +++++. .++.|.++|..+++.+..+
T Consensus 313 ~i~---------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 313 QIS---------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEE---------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 764 223578999999999 777777 5899999999999988873
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=1.9e-13 Score=134.10 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=150.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEE
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l 230 (764)
+.|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|++++ +.++.|..||. +++.+.++..+....+.++
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 579999999999999999999999998876 5789999999999888 45788999999 8999999987544578999
Q ss_pred EEeeCCCCEEEEEeC-CCcEEEEECCCceeeeeeec-----ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCc
Q 004270 231 AFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIRE-----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (764)
Q Consensus 231 ~fs~d~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 304 (764)
.+.++|+ ++++.+. ++.|..+|. +++.+..+.. .+......+++.++++++++...++.|..||.+ +
T Consensus 83 ~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G---- 155 (276)
T 3no2_A 83 RILPDGN-ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G---- 155 (276)
T ss_dssp EECTTSC-EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S----
T ss_pred EECCCCC-EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C----
Confidence 9999999 7777776 778888885 6776665541 122345667889999999999999999999765 3
Q ss_pred eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeeccccccc
Q 004270 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (764)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 351 (764)
+.+..+... ..+.++...++|+.+++++.++.|..+|..+++...+
T Consensus 156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 344444333 4567788889999999988888899998776655444
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=1.1e-13 Score=156.06 Aligned_cols=278 Identities=9% Similarity=-0.025 Sum_probs=179.4
Q ss_pred eeCCCCEEEEEeCCC----cEEEEECCCceeeeeee-----cccccCeeEEEEecCCCEEEE-----EcCCCcEEEEEec
Q 004270 233 SSDGQPLLASGASSG----VISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMS-----ASADNSIKMWIFD 298 (764)
Q Consensus 233 s~d~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~l~s-----~~~d~~i~vw~~~ 298 (764)
+|+|+++..+....+ .|.+.+...+.....+. .+|...+.+++|||||++|+. |+.+..|++||++
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 478883443433332 34555554554333322 135557899999999999883 4445789999987
Q ss_pred CCCCCceeeEeccCCCCC--CeeEEEecCCCEEEEEeCCCc-------------EEEEEeecccccccccchhhhHHHhh
Q 004270 299 TTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDRA-------------FRLFSVIQDQQSRELSQRHVAKRARK 363 (764)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (764)
++.. +. ..+... ...++|+|||+.|+.++.|.. |++|++.++
T Consensus 156 tg~~----~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~----------------- 212 (695)
T 2bkl_A 156 SGEW----SK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTE----------------- 212 (695)
T ss_dssp TCCB----CS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSC-----------------
T ss_pred CCCC----cC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCC-----------------
Confidence 7632 10 111122 268999999999999988764 555554332
Q ss_pred ccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe
Q 004270 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (764)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (764)
......+.....+...+..+.+||||+++++++
T Consensus 213 -----------------------------------------------~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 245 (695)
T 2bkl_A 213 -----------------------------------------------PSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI 245 (695)
T ss_dssp -----------------------------------------------GGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred -----------------------------------------------chhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence 211111222223446788999999999999887
Q ss_pred cCC----cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCCCe---eeeEe
Q 004270 444 AGG----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDL---KSRWE 513 (764)
Q Consensus 444 ~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~---~~~~~ 513 (764)
.++ .|++++..++.... +. .+...+....+ +++++++.+. .++.|.+||+.+++. ...+.
T Consensus 246 ~~~~~~~~l~~~~~~~~~~~~-l~--------~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 246 LRGWSENDVYWKRPGEKDFRL-LV--------KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp EETTTEEEEEEECTTCSSCEE-EE--------ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred eCCCCceEEEEEcCCCCceEE-ee--------cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence 766 67777665554332 22 44445555556 5566444444 258899999987753 33333
Q ss_pred c--CcceEEEEEeecCCEEEEEeCCCeEEEEEcc-CCeEEEEeecC-CCCeeEEEEcCCCcEEEEE----eCCCcEEEEE
Q 004270 514 V--GCSLVKIVYHRVNGLLATVADDLVIRLFDVV-ALRMVRKFEGH-TDRITDFCFSEDGKWLLSS----GMDGSLRIWD 585 (764)
Q Consensus 514 ~--~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~-~~~~~~~~~~h-~~~i~~l~~s~dg~~l~s~----s~dg~i~iwd 585 (764)
+ ...+..++++ ++.++++...|+..++|.+. +++..+.+..+ .+.+..++++||++.|+.. ...++|++||
T Consensus 316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 3 2457778888 67788888999988888665 46666677655 6678889999999877633 2357899999
Q ss_pred cCccce
Q 004270 586 VILARQ 591 (764)
Q Consensus 586 ~~~~~~ 591 (764)
+.+++.
T Consensus 395 ~~~g~~ 400 (695)
T 2bkl_A 395 VSTGKS 400 (695)
T ss_dssp TTTCCE
T ss_pred CCCCcE
Confidence 998874
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.61 E-value=2e-13 Score=133.99 Aligned_cols=243 Identities=9% Similarity=0.080 Sum_probs=180.9
Q ss_pred CCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCC-CCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhh
Q 004270 279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (764)
Q Consensus 279 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (764)
.+++|++++.++.|.+||..++ +.+..+..+. ..+.++.++|+|+.++ +.++.+..||. +++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~-------- 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK----EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGREL-------- 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT----EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE--------
T ss_pred CCcEEEeeCCCCEEEEEECCCC----eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE--------
Confidence 3568999999999999987555 4555555555 5789999999999888 34677888886 44332
Q ss_pred hHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCC
Q 004270 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (764)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (764)
|.+.. .....+.++.+.++|+
T Consensus 69 -----------------------------------------------W~~~~------------~~~~~~~~~~~~~dG~ 89 (276)
T 3no2_A 69 -----------------------------------------------WNIAA------------PAGCEMQTARILPDGN 89 (276)
T ss_dssp -----------------------------------------------EEEEC------------CTTCEEEEEEECTTSC
T ss_pred -----------------------------------------------EEEcC------------CCCccccccEECCCCC
Confidence 22221 1113567888999999
Q ss_pred EEEEEec-CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCc
Q 004270 438 FAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC 516 (764)
Q Consensus 438 ~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 516 (764)
++++.+. ++.+..++. +|+.+..+..... ...+......+++.++|+++++...++.|..||.+ ++.+..+....
T Consensus 90 ~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~--~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~ 165 (276)
T 3no2_A 90 ALVAWCGHPSTILEVNM-KGEVLSKTEFETG--IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG 165 (276)
T ss_dssp EEEEEESTTEEEEEECT-TSCEEEEEEECCS--CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS
T ss_pred EEEEecCCCCEEEEEeC-CCCEEEEEeccCC--CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC
Confidence 9999887 888888886 6666555532110 01222345566789999999999999999999998 99999998877
Q ss_pred ceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC------CCeeEEEEcCCCcEEEEEeCC--------CcEE
Q 004270 517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT------DRITDFCFSEDGKWLLSSGMD--------GSLR 582 (764)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~------~~i~~l~~s~dg~~l~s~s~d--------g~i~ 582 (764)
.+..+...+++++++++..++.|..+|..+++.+.++..+. ..+..++..++|..+++.... +..+
T Consensus 166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~ 245 (276)
T 3no2_A 166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQ 245 (276)
T ss_dssp CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCS
T ss_pred CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCce
Confidence 77788889999999999999999999999999999987432 237888999999988877421 2346
Q ss_pred EEEc-CccceEEEEeeCC
Q 004270 583 IWDV-ILARQIDAIHVDV 599 (764)
Q Consensus 583 iwd~-~~~~~~~~~~~~~ 599 (764)
++++ ++|+.+..+....
T Consensus 246 ~~~~~~~g~~~W~~~~~~ 263 (276)
T 3no2_A 246 LVEIDSEGKVVWQLNDKV 263 (276)
T ss_dssp EEEECTTSBEEEEECCTT
T ss_pred EEEECCCCCEEEEecCcc
Confidence 6666 5788877776543
No 201
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=5.3e-10 Score=127.86 Aligned_cols=512 Identities=11% Similarity=0.055 Sum_probs=307.3
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCeEEEecCC--------CCcceEEEEEeCC-e-EEEEECC-eEEEEecCce-EEEecc
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQ--------LPKKIRALASYRD-Y-TFAAYGN-HIAVVKRAHQ-VATWSR 91 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--------~~~~I~~~~~~~~-~-~~~a~g~-~i~vw~~~~~-~~~~~~ 91 (764)
....++=+++.+ -+..||-.+.+.... +. ....|.+|...++ . +++++.. .+..|+..+. ...+..
T Consensus 27 D~~G~lWigT~~-GL~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~ 104 (781)
T 3v9f_A 27 DKQGFLWFATEE-GLNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQY 104 (781)
T ss_dssp CTTSCEEEEESS-CEEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECC
T ss_pred CCCCCEEEccCC-cCccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeecc
Confidence 334555555554 477888776444322 21 1346999999886 4 7899987 7999997543 333311
Q ss_pred --------cccceEEEEEeC---CEEEEEecCCcEEEEEccCCcccccceeeEe-cCCccccEEEEeCCCCCCEEEEEeC
Q 004270 92 --------HSAKVNLLLLFG---EHILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQ 159 (764)
Q Consensus 92 --------h~~~v~~l~~~g---~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~~~ 159 (764)
....|.++..+. ..|..++.++.+..+|..+++.......... .....+..+...+++ .|.+|+.
T Consensus 105 ~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lwigt~ 181 (781)
T 3v9f_A 105 NPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDG---KLYIGHV 181 (781)
T ss_dssp CTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETT---EEEEEET
T ss_pred ccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCC---CEEEEec
Confidence 123688888754 5677777566688899876654110000000 112223333344454 6788887
Q ss_pred CCcEEEEeCCCCeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec------cCCCC
Q 004270 160 EGSLQLWNISTKKKLYEFK-------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH------SMRGA 226 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~-------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~------~~~~~ 226 (764)
++-|..||..+++...-.. .....|.++...+++.+. +|+.+ -+.+||..+++...-... .....
T Consensus 182 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~ 259 (781)
T 3v9f_A 182 EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSY 259 (781)
T ss_dssp TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCC
T ss_pred CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCce
Confidence 7569999988776543211 113568999998887654 45555 688999876653321111 11357
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee-------------cccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------------EAHDNAIISLHFFANEPVLMSASADNSIK 293 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~ 293 (764)
|.++...++|. |..|+..+-|.++|..+++...... ......|.++...++|. |-.|+.++-|.
T Consensus 260 i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 260 IFSIKQLKDNK--LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp EEEEEECTTSE--EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred EEEEEECCCCC--EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 99999888886 6667765678999987765432111 12345788998888775 55566566687
Q ss_pred EEEecCCCCCceeeEe-------ccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccc
Q 004270 294 MWIFDTTDGDPRLLRF-------RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 366 (764)
Q Consensus 294 vw~~~~~~~~~~~~~~-------~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 366 (764)
.++.... ....... .......|.++...++|. |..|+.++-|..|+..+...... .
T Consensus 337 ~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~-~------------- 399 (781)
T 3v9f_A 337 FISNAPP--TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN-K------------- 399 (781)
T ss_dssp EECSSCC--SCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC---------------
T ss_pred EeCCCCC--cceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc-c-------------
Confidence 7765432 1111110 011235678888877776 44556455588887543211100 0
Q ss_pred hhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 004270 367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446 (764)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g 446 (764)
.........|.++...++|++ .+|+.++
T Consensus 400 ---------------------------------------------------~~~~~~~~~v~~i~~d~~g~l-Wigt~~~ 427 (781)
T 3v9f_A 400 ---------------------------------------------------ENRELLSNSVLCSLKDSEGNL-WFGTYLG 427 (781)
T ss_dssp -------------------------------------------------------CCCSBEEEEEECTTSCE-EEEETTE
T ss_pred ---------------------------------------------------CCCCCCCcceEEEEECCCCCE-EEEeccC
Confidence 000012267888888887764 4577777
Q ss_pred cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec------CcceEE
Q 004270 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------GCSLVK 520 (764)
Q Consensus 447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~i~~ 520 (764)
.+..++..++........ ......|.++..++++.+.+ ++. +-|..+|..+++....... ...|.+
T Consensus 428 Gl~~~~~~~~~~~~~~~~------~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELE------KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp EEEEECSSSCEEEECCST------TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred CEEEEcCCCCcEEEeccC------CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 799999877654322110 12346799999998887555 444 5688899887665433322 256888
Q ss_pred EEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec----CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe
Q 004270 521 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 596 (764)
Q Consensus 521 ~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~----h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 596 (764)
+...++|.+.+ |+.++-+..||..+++.. .+.. ....|.++...++|++.++.. +|.|..||..+++. ..+.
T Consensus 500 i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~ 575 (781)
T 3v9f_A 500 IAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQ 575 (781)
T ss_dssp EEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEEC
T ss_pred EEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEcc
Confidence 88888777655 444444777888766543 3321 235689999999998766544 67558899877653 3333
Q ss_pred e-----CCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 597 V-----DVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 597 ~-----~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
. ...|.++...++|.+.+++ .+ +|..++.+
T Consensus 576 ~~~gl~~~~i~~i~~d~~g~lW~~t-~~--Gl~~~~~~ 610 (781)
T 3v9f_A 576 RKEGLPNTHIRAISEDKNGNIWAST-NT--GISCYITS 610 (781)
T ss_dssp GGGTCSCCCCCEEEECSSSCEEEEC-SS--CEEEEETT
T ss_pred ccCCCCCceEEEEEECCCCCEEEEc-CC--ceEEEECC
Confidence 2 1248889999999876654 33 37777754
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=1.5e-13 Score=135.59 Aligned_cols=241 Identities=7% Similarity=-0.031 Sum_probs=171.1
Q ss_pred CeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccc
Q 004270 270 AIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (764)
Q Consensus 270 ~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~ 348 (764)
...++++.+++++++ +.+.++.|.+|+..... .......+...+.+++++++|+.+++.. ++.|.+|+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG----TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc----cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence 678999999998776 54678889998654331 1111223445788999999998666555 88898888643221
Q ss_pred cccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeE
Q 004270 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 428 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~ 428 (764)
. .+ .......+.
T Consensus 100 ~-~~-------------------------------------------------------------------~~~~~~~p~ 111 (270)
T 1rwi_B 100 T-VL-------------------------------------------------------------------PFDGLNYPE 111 (270)
T ss_dssp E-EC-------------------------------------------------------------------CCCSCSSEE
T ss_pred e-ee-------------------------------------------------------------------ecCCcCCCc
Confidence 0 00 001125678
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCe
Q 004270 429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 508 (764)
Q Consensus 429 ~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 508 (764)
.++++++|+.+++...++.|.+|+..+....... ......+.+++++++++++++...++.|.+||..+...
T Consensus 112 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 112 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred ceEECCCCCEEEEECCCCEEEEEECCCceeEeec--------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 9999999997777777899999976554332211 12334678899999999777777788999999887665
Q ss_pred eeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 004270 509 KSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 509 ~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~ 587 (764)
....... ..+..+++.++|.++++...++.|.+||..+.........+...+.+++++++|+++++...++.|+++++.
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 4433233 678899999999877777778999999987765443333344678999999999988888899999999988
Q ss_pred ccce
Q 004270 588 LARQ 591 (764)
Q Consensus 588 ~~~~ 591 (764)
..+.
T Consensus 264 ~~~~ 267 (270)
T 1rwi_B 264 EHHH 267 (270)
T ss_dssp GGGS
T ss_pred Cccc
Confidence 6654
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.59 E-value=1.2e-12 Score=134.57 Aligned_cols=289 Identities=10% Similarity=0.042 Sum_probs=196.6
Q ss_pred CCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEe---------CCCcEEEEECCC
Q 004270 191 PALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEK 256 (764)
Q Consensus 191 p~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~---------~dg~i~iwd~~~ 256 (764)
++++.+.+.... +.|.++|..+++.+.++..+ ..+ .++++|||+.++++.. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 567777776653 69999999999999999876 445 8999999995555432 467899999999
Q ss_pred ceeeeeeecc------cccCeeEEEEecCCCEEEEEcC--CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC-CC
Q 004270 257 RRLQSVIREA------HDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GR 327 (764)
Q Consensus 257 ~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~ 327 (764)
++.+..+..+ .......+.|+||+++++.+.. +++|.+.|..+. +.+..+..-. +....|+ .+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~----kvv~~I~v~g----~~~~~p~g~~ 230 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK----TFDRMLDVPD----CYHIFPASPT 230 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCS----EEEEEEEETT
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC----eEEEEEEcCC----ceeeccCCCc
Confidence 9998887632 1234568899999999998864 578999987766 4444433211 1334443 35
Q ss_pred EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEc
Q 004270 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (764)
Q Consensus 328 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (764)
.+++.+.||.+.+.+...++...... .+++.
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~-------------------------------------------------~~~~v 261 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNT-------------------------------------------------EVFHT 261 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEEC-------------------------------------------------CCCSC
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEee-------------------------------------------------eeecc
Confidence 66677778888877763322211000 00000
Q ss_pred cceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCccc--ceecCc--cccccccccCcEEEEEEC
Q 004270 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR--GSYLDM--SERSNYAHNGEVVGVACD 483 (764)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~--~~~~~~--~~~~~~~h~~~v~~l~~~ 483 (764)
. .......+.+++++..++.....|.+.+.|..++... ..+... ..............++++
T Consensus 262 ~--------------~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 262 E--------------DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp T--------------TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred C--------------CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 0 0011112467888888888888899999998655422 111100 000000011122236899
Q ss_pred CCCCEEEEEeC----------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCC-EEEEEe-CCCeEEEEEccCCeEEE
Q 004270 484 STNTLMISAGY----------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFDVVALRMVR 551 (764)
Q Consensus 484 ~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~d~~i~v~d~~~~~~~~ 551 (764)
++++.++.... ++.|.+.|..+.+.+.++........++|+||++ ++++.. .++.|.|+|+.+++.++
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 99887776642 4579999999999999999888899999999999 888887 58999999999999998
Q ss_pred Ee
Q 004270 552 KF 553 (764)
Q Consensus 552 ~~ 553 (764)
++
T Consensus 408 tI 409 (426)
T 3c75_H 408 SV 409 (426)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.57 E-value=3.5e-13 Score=132.88 Aligned_cols=196 Identities=7% Similarity=-0.049 Sum_probs=144.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..+.+++++++|+++++.. ++.|.+|+........ +. ......+.+++++++++++++...++.|.+|+..
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~~-------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 137 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-LP-------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG 137 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-CC-------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-ee-------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECC
Confidence 4567789999999655555 8899999987654332 21 1233578999999999988887788999999765
Q ss_pred CCCeeeeEec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEE
Q 004270 505 GRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (764)
Q Consensus 505 ~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~i 583 (764)
+......... ...+..++++++|+++++...++.|.+||..+.........+...+..++++++|+++++...++.|.+
T Consensus 138 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 138 SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 5443322222 246788999999997777777899999999877655444444467899999999988887777889999
Q ss_pred EEcCccceEEEEeeC-CceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 584 WDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 584 wd~~~~~~~~~~~~~-~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
||............+ ..+.+++++++|+++++...++ .|++++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~-~v~~~~~~~ 264 (270)
T 1rwi_B 218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND-RVVKLTSLE 264 (270)
T ss_dssp ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT-EEEEECCCG
T ss_pred EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC-EEEEEcCCC
Confidence 998755433222122 4589999999998777766666 699998764
No 205
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=3.9e-09 Score=120.68 Aligned_cols=509 Identities=10% Similarity=0.047 Sum_probs=301.6
Q ss_pred EEEEEeCCeEEEEecCCCeEEEecCC-------CCcceEEEEEeC--C-eEEEEE-CCeEEEEecCc-eEEEecc-----
Q 004270 29 FVTVSVGKAFHIYNCAKLNLVLVGPQ-------LPKKIRALASYR--D-YTFAAY-GNHIAVVKRAH-QVATWSR----- 91 (764)
Q Consensus 29 ~~~~~~~~~i~iwd~~~~~~~~~~~~-------~~~~I~~~~~~~--~-~~~~a~-g~~i~vw~~~~-~~~~~~~----- 91 (764)
|-+++.++-+..||..+.+....... ....|.+++... + ..++++ ++.|..|+..+ ....+..
T Consensus 80 lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 80 IWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 55566665799999998877654211 123689999887 5 577777 67799999643 3333321
Q ss_pred -cccceEEEEEe-CCEEEEEecCCcEEEEEccCCcccccce---eeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 92 -HSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPV---GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 92 -h~~~v~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
....|.++..+ ...|..++.++.+..||..+++...... .........+..+...+++ .|.+|+.+ -|.+|
T Consensus 160 l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lwigt~~-Gl~~~ 235 (781)
T 3v9f_A 160 LPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG---NIWIGTSK-GLALF 235 (781)
T ss_dssp CSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC---CEEEEETT-EEEEE
T ss_pred CCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC---CEEEEeCC-cHheE
Confidence 23457888775 5667777766568899987765411000 0001122334444444554 47777776 59999
Q ss_pred eCCCCeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe-------c------cCCCC
Q 004270 167 NISTKKKLYEFK-------GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-------H------SMRGA 226 (764)
Q Consensus 167 d~~~~~~~~~~~-------~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~-------~------~~~~~ 226 (764)
|..+++...... .....|.++...++|. |.+|+..+-|.++|..+++...... . -....
T Consensus 236 d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~ 314 (781)
T 3v9f_A 236 NANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNAS 314 (781)
T ss_dssp ETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSC
T ss_pred CCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCe
Confidence 987776543221 1246799999988875 5567775668889987665322111 0 11357
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeee--------cccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 227 v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
|.++...++|. |..|+.++-|..++..++....... ......|.++...+++. |..|+.++-|..|+..
T Consensus 315 v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 315 ARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENG 391 (781)
T ss_dssp EEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETT
T ss_pred EEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECC
Confidence 99999988886 6677777889999987654332211 01235688888887775 4455555667777654
Q ss_pred CCCCCceeeE-eccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCcee
Q 004270 299 TTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (764)
Q Consensus 299 ~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (764)
... ..... ........|.++...++|.. ..|+.++-+..++..+++.... .
T Consensus 392 ~~~--~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~-~------------------------ 443 (781)
T 3v9f_A 392 KRV--AIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQII-E------------------------ 443 (781)
T ss_dssp EEE--EECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEEC-C------------------------
T ss_pred CCe--EEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEe-c------------------------
Confidence 321 01100 00123456778877777764 4466555577777543321100 0
Q ss_pred EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCc
Q 004270 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (764)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~ 457 (764)
........|.++...++|+ +.+|+. +-+.+|+..++.
T Consensus 444 -----------------------------------------~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 444 -----------------------------------------LEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKK 480 (781)
T ss_dssp -----------------------------------------STTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSS
T ss_pred -----------------------------------------cCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCe
Confidence 0001225688888888776 555666 568899988765
Q ss_pred ccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-----CcceEEEEEeecCCEEEE
Q 004270 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-----GCSLVKIVYHRVNGLLAT 532 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~i~~~~~s~~~~~la~ 532 (764)
......... .......|.++..+++|.+.+. +.++-|..||..+++... +.. ...|.++...++|.+.+.
T Consensus 481 ~~~~~~~~~---~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 481 VIHHYDTSN---SQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp CCEEECTTT---SSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred EEecccCcc---cccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 443221100 0112467999999999886554 443446778876654332 221 246788888887775554
Q ss_pred EeCCCeEEEEEccCCeEEEEeec----CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-------ce
Q 004270 533 VADDLVIRLFDVVALRMVRKFEG----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SI 601 (764)
Q Consensus 533 ~~~d~~i~v~d~~~~~~~~~~~~----h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~v 601 (764)
+.+|.+..||..+++.. .+.. ....|.++...++|++.++ +.+| |..++..+++ +..+.... ..
T Consensus 556 -T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~-~~~~~~~dGl~~~~f~~ 630 (781)
T 3v9f_A 556 -TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKC-FYTYDHSNNIPQGSFIS 630 (781)
T ss_dssp -ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTE-EEEECGGGTCCSSCEEE
T ss_pred -ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCc-eEEecccCCcccccccc
Confidence 44666588888776543 3321 1246889999999987665 4455 7778876554 34443211 13
Q ss_pred EEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 602 TALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 602 ~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
.++...++|.+++ ++.+| +..++.+
T Consensus 631 ~~~~~~~~G~l~~-g~~~G--l~~f~p~ 655 (781)
T 3v9f_A 631 GCVTKDHNGLIYF-GSING--LCFFNPD 655 (781)
T ss_dssp EEEEECTTSCEEE-EETTE--EEEECSC
T ss_pred CceEECCCCEEEE-ECCCc--eEEEChh
Confidence 5677788887665 44454 7777654
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.57 E-value=1.6e-12 Score=133.59 Aligned_cols=288 Identities=9% Similarity=-0.002 Sum_probs=191.8
Q ss_pred CEEEEEeCC-----CcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEEEEccCCceE
Q 004270 152 NKVIVGSQE-----GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNVRYDEEL 216 (764)
Q Consensus 152 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~----------~dg~i~iwd~~~~~~~ 216 (764)
+.+++.... +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..+++.+
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv 162 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI 162 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence 567776553 69999999999999999865555 899999999888876 3678999999999999
Q ss_pred EEEecc-C-----CCCEEEEEEeeCCCCEEEEEeC--CCcEEEEECCCceeeeeeecccccCeeEEEEecCC-CEEEEEc
Q 004270 217 VTFTHS-M-----RGAVTALAFSSDGQPLLASGAS--SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSAS 287 (764)
Q Consensus 217 ~~~~~~-~-----~~~v~~l~fs~d~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~ 287 (764)
..+... . ......++|+|||+ +++++.. ++.|.+.|+.+++.+..+..+.. ....|++ +.+++.+
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVFYMNC 236 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEEEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEEEEEc
Confidence 888643 0 12356789999999 6666553 68899999999999888873221 2233332 4555666
Q ss_pred CCCcEEEEEecCCCCCceeeEeccCCCCC-CeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccc
Q 004270 288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 366 (764)
Q Consensus 288 ~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 366 (764)
.||.+.+.+.....-.......+.....+ ...+.|.+++..++..+..+.+.+.|.........-
T Consensus 237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~-------------- 302 (426)
T 3c75_H 237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA-------------- 302 (426)
T ss_dssp TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC--------------
T ss_pred CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee--------------
Confidence 67776666652221000000011111111 123567888888877778888998887543211000
Q ss_pred hhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec--
Q 004270 367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-- 444 (764)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-- 444 (764)
.|.+........- ........++++++++.+++...
T Consensus 303 -------------------------------------~~~~~~~~~i~~g-----~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 303 -------------------------------------PIEALTEAERADD-----WRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp -------------------------------------CEESSCTTTGGGT-----EEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred -------------------------------------eeeeccccccccc-----cccCCceeeEEcCCCCEEEEEeccc
Confidence 0000000000000 00012223688999998888753
Q ss_pred --------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEe-CCCeEEEEECCCCCeeeeE
Q 004270 445 --------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 445 --------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~ 512 (764)
.+.|.++|..+.+.+..+. -.....+++|+|+++ +++++. .++.|.++|..+++.+.++
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~---------vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIE---------LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEE---------EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEE---------CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999988874 123578999999999 888887 5899999999999999887
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=2.6e-11 Score=121.44 Aligned_cols=278 Identities=12% Similarity=0.014 Sum_probs=177.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEec-cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 179 ~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
.....+.++++.++|++.++...++.|.+||.. ++... +.. .....+.++++.++|. ++++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-C
Confidence 345678999999999877776678999999987 55433 322 2236789999999998 77666667889999987 5
Q ss_pred eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCc
Q 004270 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
+............+.++++.+++.+.++...++.|..++.+ . ... ..........+..+++.++++..++...++.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g--~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G--TIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S--CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C--CEE-EccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 54322221234678999999999888877767778777543 1 111 1112223344556666666654444333444
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
|..++
T Consensus 169 i~~~~--------------------------------------------------------------------------- 173 (300)
T 2qc5_A 169 IGRIT--------------------------------------------------------------------------- 173 (300)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEEEC---------------------------------------------------------------------------
Confidence 44444
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCe
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 497 (764)
. ++.... +. ...+...+.++++++++++.++....+.
T Consensus 174 -----------------------------------~-~g~~~~-~~------~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 174 -----------------------------------N-TGKLEE-YP------LPTNAAAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp -----------------------------------T-TCCEEE-EE------CSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred -----------------------------------C-CCcEEE-ee------CCCCCCCcceEEECCCCCEEEEccCCCE
Confidence 3 111111 00 0122345677888887776666656667
Q ss_pred EEEEECCCCCeeeeE-e-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEE-EeecCCCCeeEEEEcCCCcEEEE
Q 004270 498 IKVWDFKGRDLKSRW-E-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLS 574 (764)
Q Consensus 498 v~iwd~~~~~~~~~~-~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~-~~~~h~~~i~~l~~s~dg~~l~s 574 (764)
|.+|+. +++..... . ....+..+++.++|++.++...++.|..||.. ++... .+......+.+++++++|++.++
T Consensus 211 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 288 (300)
T 2qc5_A 211 IGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFA 288 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEE
T ss_pred EEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEE
Confidence 888877 44433221 1 22567899999999877776677999999984 44332 23334567899999999987665
Q ss_pred EeCCCcEEEEEc
Q 004270 575 SGMDGSLRIWDV 586 (764)
Q Consensus 575 ~s~dg~i~iwd~ 586 (764)
.. . .|..+|.
T Consensus 289 ~~-~-~i~~~~p 298 (300)
T 2qc5_A 289 LK-C-KIGKLNL 298 (300)
T ss_dssp CS-S-EEEEEEE
T ss_pred cc-C-ceEEeCC
Confidence 54 4 6776664
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=2.7e-12 Score=129.69 Aligned_cols=199 Identities=12% Similarity=0.058 Sum_probs=142.7
Q ss_pred CCeEEEEEccC-CCEEEEEecCCcEEEEECcCCcccce-ecCccccccccccCcEEEEEECCCCCEEEEEeCC-------
Q 004270 425 TAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGS-YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH------- 495 (764)
Q Consensus 425 ~~v~~~~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------- 495 (764)
..+..++++++ |++ .+++..+.|.+|+.. ++.... .... .......+.+++++++|+++++...+
T Consensus 71 ~~~~~i~~~~~~g~l-~v~~~~~~l~~~d~~-g~~~~~~~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 71 GIPAGCQCDRDANQL-FVADMRLGLLVVQTD-GTFEEIAKKDS----EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY 144 (314)
T ss_dssp CCEEEEEECSSSSEE-EEEETTTEEEEEETT-SCEEECCSBCT----TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred CCCceEEEecCCCcE-EEEECCCCEEEEeCC-CCEEEEEeccC----CCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence 56788999999 654 444445579999988 654322 1100 01123458899999999988877655
Q ss_pred --------CeEEEEECCCCCeeeeEecCcceEEEEEe----ecCCEEEEE-eCCCeEEEEEcc-CCe-----EEEEeecC
Q 004270 496 --------GDIKVWDFKGRDLKSRWEVGCSLVKIVYH----RVNGLLATV-ADDLVIRLFDVV-ALR-----MVRKFEGH 556 (764)
Q Consensus 496 --------g~v~iwd~~~~~~~~~~~~~~~i~~~~~s----~~~~~la~~-~~d~~i~v~d~~-~~~-----~~~~~~~h 556 (764)
+.|..|+.. ++.............++++ ++++.++++ ..++.|.+||.. +++ ....+.++
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 567777765 5554444444566889999 999766555 567899999986 454 23344445
Q ss_pred C-CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC-CceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 557 T-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 557 ~-~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
. ..+..++++++|+++++...++.|.+||..+++.+..+..+ ..+.+++|+|+|+.|..++.+...|..|+...
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 4 66889999999998888878899999999888888777766 45999999999997766665544699888753
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=4.4e-13 Score=152.27 Aligned_cols=277 Identities=11% Similarity=0.005 Sum_probs=181.6
Q ss_pred ecCCCEEEEEcCCC---cEEEEEecCC---CCCceeeEe----ccCCCCCCeeEEEecCCCEEEEEeCC-----CcEEEE
Q 004270 277 FANEPVLMSASADN---SIKMWIFDTT---DGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLF 341 (764)
Q Consensus 277 ~~~~~~l~s~~~d~---~i~vw~~~~~---~~~~~~~~~----~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~i~ 341 (764)
+|+|++++....++ .-.+|..+.. .+..+.+.. -.+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48898887766544 3677877654 333333321 12343467889999999999877643 358888
Q ss_pred EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (764)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (764)
|+.+++......
T Consensus 195 dl~tg~~~~~~~-------------------------------------------------------------------- 206 (741)
T 1yr2_A 195 GVADGKPLADEL-------------------------------------------------------------------- 206 (741)
T ss_dssp ETTTCCEEEEEE--------------------------------------------------------------------
T ss_pred ECCCCCCCCccC--------------------------------------------------------------------
Confidence 886654321100
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCc--------------EEEEECcCCcccceecCccccccccccCcEEEEEECCCCC
Q 004270 422 ENPTAVKACTISACGNFAVLGTAGGW--------------IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (764)
Q Consensus 422 ~~~~~v~~~~~s~~g~~l~~g~~~g~--------------i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (764)
....+..++|+|| +.|+.+..++. |++|++.++.....+.. ....+...+.++.|+|||+
T Consensus 207 -~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~----~~~~~~~~~~~~~~SpDG~ 280 (741)
T 1yr2_A 207 -KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF----ATPELPKRGHGASVSSDGR 280 (741)
T ss_dssp -EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE----CCTTCTTCEEEEEECTTSC
T ss_pred -CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe----ccCCCCeEEEEEEECCCCC
Confidence 0011235789999 98888876554 88999987764322210 0013344688999999999
Q ss_pred EEEEEeCCC-----eEEEEECCCC--CeeeeEe-cCcceEEEEEeecCCEEEEEeCC----CeEEEEEccCC--eEEEEe
Q 004270 488 LMISAGYHG-----DIKVWDFKGR--DLKSRWE-VGCSLVKIVYHRVNGLLATVADD----LVIRLFDVVAL--RMVRKF 553 (764)
Q Consensus 488 ~l~s~~~dg-----~v~iwd~~~~--~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d----~~i~v~d~~~~--~~~~~~ 553 (764)
+|+..+.++ .|++||+.++ +....+. ........ ++|+|+.|+..+.+ +.|.+||+.++ +....+
T Consensus 281 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 281 WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence 998877554 8999999877 4133333 33344444 45899999888764 56999999884 344444
Q ss_pred ecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcC-ccceEEEEeeC--CceEEEEEcCCCCeEEEEEeC----CCeEEEE
Q 004270 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVD--VSITALSLSPNMDVLATAHVD----QNGVYLW 626 (764)
Q Consensus 554 ~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d----~~~i~lW 626 (764)
..+...+.+++|+ ++.++++...|+..++|.+. +|+.+..+..+ ..+..++++|+++.|+....+ + .|++|
T Consensus 360 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~-~i~~~ 437 (741)
T 1yr2_A 360 PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA-TVLAL 437 (741)
T ss_dssp CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE-EEEEE
T ss_pred cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC-EEEEE
Confidence 5555567778887 66788888899988877654 56666666643 348899999999877644332 3 69999
Q ss_pred eccc
Q 004270 627 VNRC 630 (764)
Q Consensus 627 ~~~~ 630 (764)
++.+
T Consensus 438 d~~t 441 (741)
T 1yr2_A 438 DPAT 441 (741)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9753
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=2.9e-13 Score=153.76 Aligned_cols=283 Identities=12% Similarity=0.063 Sum_probs=179.3
Q ss_pred cCCCCEEEEEEcCCe---EEEEEcc-----CCceEEEEe-----ccCCCCEEEEEEeeCCCCEEEEEe-CCC----cEEE
Q 004270 190 SPALDVVAVGCSDGK---IHVHNVR-----YDEELVTFT-----HSMRGAVTALAFSSDGQPLLASGA-SSG----VISI 251 (764)
Q Consensus 190 sp~~~~la~g~~dg~---i~iwd~~-----~~~~~~~~~-----~~~~~~v~~l~fs~d~~~~l~sg~-~dg----~i~i 251 (764)
+|+|++++....++. -.+|... .++....+. ..+...+..++|||||+ .|+.+. .+| .|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-EEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEE
Confidence 488888887665432 4555543 233222221 11123688999999999 555544 333 5999
Q ss_pred EECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc--------------EEEEEecCCCCCceeeEeccCCCCCC
Q 004270 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS--------------IKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~--------------i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
||+.+++.+.... +...+..++|+|| +.|+.++.++. |++|++.+......++.....+...+
T Consensus 194 ~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 194 VGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG 270 (741)
T ss_dssp EETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred EECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence 9999998765422 3333468899999 98888877654 77777654432223444444444467
Q ss_pred eeEEEecCCCEEEEEeCCC-----cEEEEEeecccc--cccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 318 LCIRFYANGRHILSAGQDR-----AFRLFSVIQDQQ--SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
..+.|+|||++|+..+.++ .|++||+.++.. ...+.
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~------------------------------------- 313 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI------------------------------------- 313 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-------------------------------------
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-------------------------------------
Confidence 8999999999988877543 677777764310 11110
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC----CcEEEEECcCCc-ccceecCc
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----GWIERFNLQSGI-SRGSYLDM 465 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~----g~i~i~~~~~~~-~~~~~~~~ 465 (764)
.+....... ++|+|+.+++.+.. +.|.+|++.++. ....+.
T Consensus 314 -------------------------------~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-- 359 (741)
T 1yr2_A 314 -------------------------------PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-- 359 (741)
T ss_dssp -------------------------------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE--
T ss_pred -------------------------------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe--
Confidence 001122222 35889988888764 459999998752 222222
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCeeeeEec--CcceEEEEEeecCCEEEEEeC----CCe
Q 004270 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEV--GCSLVKIVYHRVNGLLATVAD----DLV 538 (764)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~----d~~ 538 (764)
..+...+.+++++ ++.++++...|+..++|.+. +++....+.. ...+..+.++|+++.++.... .++
T Consensus 360 -----~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 433 (741)
T 1yr2_A 360 -----PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPAT 433 (741)
T ss_dssp -----CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEE
T ss_pred -----cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2445567778887 66778888889987777654 4555555554 366788999999886664432 478
Q ss_pred EEEEEccCCeEEEEee
Q 004270 539 IRLFDVVALRMVRKFE 554 (764)
Q Consensus 539 i~v~d~~~~~~~~~~~ 554 (764)
|++||+.+++ ...+.
T Consensus 434 i~~~d~~tg~-~~~l~ 448 (741)
T 1yr2_A 434 VLALDPATAK-TTPWE 448 (741)
T ss_dssp EEEEETTTTE-EEECS
T ss_pred EEEEECCCCc-EEEEe
Confidence 9999999887 34444
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.51 E-value=6.4e-11 Score=118.53 Aligned_cols=276 Identities=10% Similarity=0.031 Sum_probs=184.7
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEE
Q 004270 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY-EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV 217 (764)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~ 217 (764)
....+++.+++ +..++...++.|.+||.. ++... .+..+...+.++++.+++.+.++...++.|..+|.. ++..
T Consensus 21 ~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~- 95 (300)
T 2qc5_A 21 GPYGITSSEDG--KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT- 95 (300)
T ss_dssp CEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CcceeeECCCC--CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-
Confidence 44566778887 555555567899999987 55443 223344678999999999877776667899999987 5543
Q ss_pred EEecc-CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEE
Q 004270 218 TFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 218 ~~~~~-~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (764)
.+... ....+.++++.++|. ++++...++.|..+|.. ++............+.++++.+++++.++...++.|..++
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 33321 246789999999998 77766667899999987 6544322213456789999999999777766677888886
Q ss_pred ecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCce
Q 004270 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (764)
.+ +.... .....+...+..+++.++|+..++....+.|..|+. ++....
T Consensus 174 ~~---g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-------------------------- 222 (300)
T 2qc5_A 174 NT---GKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-------------------------- 222 (300)
T ss_dssp TT---CCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--------------------------
T ss_pred CC---CcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--------------------------
Confidence 52 22121 222344567889999999987776666677888875 221100
Q ss_pred eEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC
Q 004270 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (764)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~ 456 (764)
+. .......+.+++++++|+..++...++.|..|+. ++
T Consensus 223 ----------------------------~~-------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g 260 (300)
T 2qc5_A 223 ----------------------------YD-------------IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DN 260 (300)
T ss_dssp ----------------------------EE-------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TS
T ss_pred ----------------------------EE-------------CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CC
Confidence 00 0012256789999999996666666789999998 44
Q ss_pred cccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
... .+.. ......+.+++++++|++.++.. . .|..+|.
T Consensus 261 ~~~-~~~~------~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 261 TIQ-EYQL------QTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEE-EEEC------CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred cEE-EEEC------CccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 332 2210 12345678899999998666554 4 6666654
No 212
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.49 E-value=1.1e-11 Score=138.12 Aligned_cols=336 Identities=8% Similarity=0.073 Sum_probs=203.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC----------e-EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS----------I-SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~----------i-~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
..|++++.++.|.-+|..+|+.+.++...... + ..+++ ++..|++++.|+.|..+|.++|+.+.++.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 57999999999999999999999998754321 0 11222 35688899999999999999999998887
Q ss_pred cc-CCCCEEEEEEe---eCCCCEEEEEe------CCCcEEEEECCCceeeeeeeccc-----------------------
Q 004270 221 HS-MRGAVTALAFS---SDGQPLLASGA------SSGVISIWNLEKRRLQSVIREAH----------------------- 267 (764)
Q Consensus 221 ~~-~~~~v~~l~fs---~d~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~h----------------------- 267 (764)
.. +......+..+ .++. ++++. .+|.|..||.++|+.+..+....
T Consensus 149 ~~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp CCSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred CcCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 53 11111111111 2554 44443 36899999999999887765210
Q ss_pred -------ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEE
Q 004270 268 -------DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (764)
Q Consensus 268 -------~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i 340 (764)
......+++.|+..+++.++.++.. |..... . +. .+..++ -+.|..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~--w~~~~~--------~------~~-------~gd~~y----~~~v~A 279 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSL--WDPKWR--------S------QA-------KGDNLF----LSSIVA 279 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHH--------H------TT-------CSCCTT----TTEEEE
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCc--cccCCC--------C------CC-------CCCcee----eeeEEE
Confidence 0111256788887888887776542 321100 0 00 000000 012444
Q ss_pred EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (764)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (764)
+|..+++..-.+..... .. |++
T Consensus 280 lD~~TG~~~W~~~~~~~-----------------------------d~----------------wd~------------- 301 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPG-----------------------------DA----------------WDY------------- 301 (689)
T ss_dssp EETTTCCEEEEEESSTT-----------------------------CC----------------SCC-------------
T ss_pred EEccCCceeEeeecCCc-----------------------------cc----------------ccc-------------
Confidence 44444332221110000 00 000
Q ss_pred CCCCCCeEEEEEccCCC---EEEEEecCCcEEEEECcCCcccceecCcccc------------------c--ccccc---
Q 004270 421 PENPTAVKACTISACGN---FAVLGTAGGWIERFNLQSGISRGSYLDMSER------------------S--NYAHN--- 474 (764)
Q Consensus 421 ~~~~~~v~~~~~s~~g~---~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~------------------~--~~~h~--- 474 (764)
..........+..+|+ .++.++.+|.++++|..+|+.+......... . .....
T Consensus 302 -~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~ 380 (689)
T 1yiq_A 302 -TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL 380 (689)
T ss_dssp -CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE
T ss_pred -cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeE
Confidence 0001111222223454 6788888899999998888876432211100 0 00000
Q ss_pred --------CcEEEEEECCCCCEEEEEeC---------------------------------------------CCeEEEE
Q 004270 475 --------GEVVGVACDSTNTLMISAGY---------------------------------------------HGDIKVW 501 (764)
Q Consensus 475 --------~~v~~l~~~~~~~~l~s~~~---------------------------------------------dg~v~iw 501 (764)
..-..++++|+..++++... +|.|+.|
T Consensus 381 ~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~ 460 (689)
T 1yiq_A 381 VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAW 460 (689)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred eCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEE
Confidence 01123788888887776532 4789999
Q ss_pred ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC-eeEEEEcCCCcE-EEEEeC
Q 004270 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGKW-LLSSGM 577 (764)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~-i~~l~~s~dg~~-l~s~s~ 577 (764)
|+.+++.+..+..+.+.....+...+.++++++.|+.++.||.++|+.+.+++...+. -.-+.|+.||+. +++.+.
T Consensus 461 D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 461 DPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 9999999999888876666677888999999999999999999999999998755432 345778889874 444443
No 213
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.46 E-value=5.8e-11 Score=131.97 Aligned_cols=334 Identities=12% Similarity=0.063 Sum_probs=206.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-----------eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-----------ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-----------i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
..|++++.++.|.-+|..+|+.+.++...... ...+++ ++..|++++.|+.|..+|..+|+.+.++.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 57889989999999999999999998754221 112233 45688899999999999999999999887
Q ss_pred cc-CC---CCEEEEEEeeCCCCEEEEEeC------CCcEEEEECCCceeeeeeecccc----------------------
Q 004270 221 HS-MR---GAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQSVIREAHD---------------------- 268 (764)
Q Consensus 221 ~~-~~---~~v~~l~fs~d~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~h~---------------------- 268 (764)
.. .. ..+.+--...++ .+++++. +|.|+.+|..+|+.+..+.....
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp TTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred CCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 54 10 112211111244 3444442 68999999999998877652111
Q ss_pred ---------cCeeEEEEecCCCEEEEEcCCC-------------------cEEEEEecCCCCCceeeEeccCCC------
Q 004270 269 ---------NAIISLHFFANEPVLMSASADN-------------------SIKMWIFDTTDGDPRLLRFRSGHS------ 314 (764)
Q Consensus 269 ---------~~v~~l~~~~~~~~l~s~~~d~-------------------~i~vw~~~~~~~~~~~~~~~~~h~------ 314 (764)
.....+++.|++..++.++.++ +|..+|.+++. ..-......|.
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTS 311 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCC
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCccccccc
Confidence 1113578889888888887664 36666555442 22222222231
Q ss_pred -CCCeeEEEecCC---CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccccc
Q 004270 315 -APPLCIRFYANG---RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (764)
Q Consensus 315 -~~v~~i~~~~~~---~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (764)
..+..+....+| ..++.++.+|.+.++|..+++..........
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~--------------------------------- 358 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV--------------------------------- 358 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC---------------------------------
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc---------------------------------
Confidence 223333444467 6788888999999999877765433211000
Q ss_pred ceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcccccc
Q 004270 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470 (764)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 470 (764)
.....+ ...|+.+...... + .+.....+.. .
T Consensus 359 ----------------------------------~~~~~~--d~~g~~~~~~~~~-----~---~~~~~~~~P~-----~ 389 (677)
T 1kb0_A 359 ----------------------------------NWASGY--DKHGKPIGIAAAR-----D---GSKPQDAVPG-----P 389 (677)
T ss_dssp ----------------------------------SSEEEE--CTTSCEEECGGGG-----C---TTSCEECSSC-----T
T ss_pred ----------------------------------Cccccc--CCCCceeeccccC-----c---CCCccEECcC-----c
Confidence 000000 0011111000000 0 0000000000 0
Q ss_pred ccccCcEEEEEECCCCCEEEEEeC-------------------------------------------CCeEEEEECCCCC
Q 004270 471 YAHNGEVVGVACDSTNTLMISAGY-------------------------------------------HGDIKVWDFKGRD 507 (764)
Q Consensus 471 ~~h~~~v~~l~~~~~~~~l~s~~~-------------------------------------------dg~v~iwd~~~~~ 507 (764)
.+.. .-..++++|++.++++... .|.|..||+.+++
T Consensus 390 ~G~~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 390 YGAH-NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TCSS-CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccc-CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 0111 1135667777776666432 2789999999999
Q ss_pred eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC-CCeeEEEEcCCCcEEEE
Q 004270 508 LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLS 574 (764)
Q Consensus 508 ~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~-~~i~~l~~s~dg~~l~s 574 (764)
.+..+....+.....+..++.++++++.|+.+++||..+++.+.++.... ..-.-+.|+.+|+.++.
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 99999887777777788889999999999999999999999999987443 33345677788875543
No 214
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=1.3e-10 Score=120.49 Aligned_cols=295 Identities=11% Similarity=0.063 Sum_probs=189.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCC---------CCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG---------SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS 222 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~ 222 (764)
..+++++.++.|..+|.++|+.+..+.... ..+.+ ....++..+++++.++.|..+|..+|+.+......
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 579999999999999999999998876532 22322 22224567888999999999999999998877654
Q ss_pred CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe------eEEEEecCCCEEEEEcCCCcEEEEE
Q 004270 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI------ISLHFFANEPVLMSASADNSIKMWI 296 (764)
Q Consensus 223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v------~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (764)
......... .++ .+++++.++.|..+|..+++.+.... .. ..+ ...... +..++.++.++.+..+|
T Consensus 133 -~~~~~~p~~-~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~-~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 133 -GEALSRPVV-SDG--LVLIHTSNGQLQALNEADGAVKWTVN-LD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp -SCCCSCCEE-ETT--EEEEECTTSEEEEEETTTCCEEEEEE-CC-C-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred -CceEcCCEE-ECC--EEEEEcCCCeEEEEECCCCcEEEEEe-CC-CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 111111122 244 57778889999999999998887766 22 111 122222 34677788888899887
Q ss_pred ecCCCCCceeeEeccCCC--C-----C---Ce-eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhcc
Q 004270 297 FDTTDGDPRLLRFRSGHS--A-----P---PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (764)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~--~-----~---v~-~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 365 (764)
..++. .+....... . . +. .... .+..++.++.++.+..+|..+++....
T Consensus 205 ~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~-------------- 264 (376)
T 3q7m_A 205 MEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWK-------------- 264 (376)
T ss_dssp TTTCC----EEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEE--------------
T ss_pred CCCCc----EEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEee--------------
Confidence 76542 222111110 0 0 10 1111 345677778888899988766543221
Q ss_pred chhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC
Q 004270 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445 (764)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~ 445 (764)
... .....+. .++..+++++.+
T Consensus 265 -----------------------------------------~~~---------------~~~~~~~--~~~~~l~~~~~~ 286 (376)
T 3q7m_A 265 -----------------------------------------REL---------------GSVNDFI--VDGNRIYLVDQN 286 (376)
T ss_dssp -----------------------------------------ECC---------------CCEEEEE--EETTEEEEEETT
T ss_pred -----------------------------------------ccC---------------CCCCCce--EECCEEEEEcCC
Confidence 110 1122222 247788889999
Q ss_pred CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEe
Q 004270 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH 524 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s 524 (764)
|.+..+|..+++....... .....+..... .+..|+.++.+|.|.++|..+++.+...... ..+......
T Consensus 287 g~l~~~d~~tG~~~w~~~~-------~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~ 357 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSD-------LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA 357 (376)
T ss_dssp CCEEEEETTTCCEEEEECT-------TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE
T ss_pred CeEEEEECCCCcEEEeecc-------cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE
Confidence 9999999999987665431 11111222222 2467888899999999999999998887763 333221111
Q ss_pred ecCCEEEEEeCCCeEEEEE
Q 004270 525 RVNGLLATVADDLVIRLFD 543 (764)
Q Consensus 525 ~~~~~la~~~~d~~i~v~d 543 (764)
.+..|++++.+|.|+.|+
T Consensus 358 -~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 358 -ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -ETTEEEEEBTTSCEEEEE
T ss_pred -ECCEEEEEeCCCEEEEEe
Confidence 367888899999999886
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=7.9e-11 Score=117.47 Aligned_cols=190 Identities=11% Similarity=0.113 Sum_probs=134.6
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCC---------
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------- 495 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--------- 495 (764)
..+.+++++++|++++ +. ++.|.+||..++.......... ......+..++++|+|+++++...+
T Consensus 54 ~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~----~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDN----DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCT----TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCC----CCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 5688999999999544 44 5689999998876543221100 0123458899999999977755322
Q ss_pred CeEEEEECCC-CCeeeeEecCcceEEEEEeecCCEEEE-EeCCCeEEEEEc--cCCeE-----EEEeecCCCCeeEEEEc
Q 004270 496 GDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLAT-VADDLVIRLFDV--VALRM-----VRKFEGHTDRITDFCFS 566 (764)
Q Consensus 496 g~v~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~-~~~d~~i~v~d~--~~~~~-----~~~~~~h~~~i~~l~~s 566 (764)
..-.+|.+.. ++.............++|+|+++.|++ .+.++.|.+|++ .++.. ...+..+.+....++++
T Consensus 128 ~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp TCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred CCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 2345555543 343333333356788999999987655 455789999997 45543 23333344668899999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEc-CCCCeEEEEEeCC
Q 004270 567 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLS-PNMDVLATAHVDQ 620 (764)
Q Consensus 567 ~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~s-p~g~~lat~~~d~ 620 (764)
++|++.++...++.|.+||..+|+.+..+..+. .+++++|. |+++.|..++...
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 999988888778899999999999999998874 59999998 8988877776543
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.42 E-value=1.5e-11 Score=124.44 Aligned_cols=279 Identities=10% Similarity=-0.047 Sum_probs=183.2
Q ss_pred EEEEEeCCC----cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc----------CCCcEEEEEecCCCCCc
Q 004270 239 LLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDP 304 (764)
Q Consensus 239 ~l~sg~~dg----~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~ 304 (764)
.+++...++ .|.++|..+++.+.++..+. .+ .+.++||++.++++. .++.|.+||..+.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---- 106 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---- 106 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC----
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----
Confidence 444444444 78899999999999998554 34 799999999888876 3688999988776
Q ss_pred eeeEeccCC-------CCCCeeEEEecCCCEEEEEeC--CCcEEE--EEeecccccccccchhhhHHHhhccchhhhhcc
Q 004270 305 RLLRFRSGH-------SAPPLCIRFYANGRHILSAGQ--DRAFRL--FSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (764)
Q Consensus 305 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (764)
+.+..+... ...+..++++|||++++++.. +..+.+ +|+.+ ...+..+
T Consensus 107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~------------------ 165 (368)
T 1mda_H 107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA------------------ 165 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS------------------
T ss_pred CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC------------------
Confidence 344443222 245789999999999998874 356777 77754 1111100
Q ss_pred CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEE
Q 004270 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFN 452 (764)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~~g~i~i~~ 452 (764)
.. ..+.|+| ..+++.+.+|.+...+
T Consensus 166 ---------------------------------------------------~~---~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 166 ---------------------------------------------------SC---FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ---------------------------------------------------SC---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred ---------------------------------------------------Cc---eEEccCCCeEEEEEcCCCCEEEEE
Confidence 00 0112333 2333445566666677
Q ss_pred CcC-----CcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--eeeeEecC----------
Q 004270 453 LQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---------- 515 (764)
Q Consensus 453 ~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~---------- 515 (764)
+.+ ++...... ....-...+. + .+++..++..+. +.+.+.|+.+.. .+..+...
T Consensus 192 ~~~~~~~~~~v~~~~t----~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~ 262 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCT----GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp CCSSCCCCEECCCCSC----TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred CccccccCCeEEEEee----eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence 765 33221100 0000112222 3 556666666666 999999987543 22222211
Q ss_pred -cceEEEEEeecCCEEEEEeC---------CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcE-EEEEe-CCCcEEE
Q 004270 516 -CSLVKIVYHRVNGLLATVAD---------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW-LLSSG-MDGSLRI 583 (764)
Q Consensus 516 -~~i~~~~~s~~~~~la~~~~---------d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~-l~s~s-~dg~i~i 583 (764)
.....++++|+++.++++.. ++.+.++|+.+++.+.++.... ....++|+|||++ +++.. .+++|.+
T Consensus 263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEE
Confidence 11223789999998887643 2366799999999998887543 5889999999984 55666 5999999
Q ss_pred EEcCccceEEEEeeCCceEEEEEcCC
Q 004270 584 WDVILARQIDAIHVDVSITALSLSPN 609 (764)
Q Consensus 584 wd~~~~~~~~~~~~~~~v~~l~~sp~ 609 (764)
+|+.+++.++.+........+++.+.
T Consensus 342 ID~~t~kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 342 YDAASDQDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp EESSSCEEEEECCCCSCCCEEECCCC
T ss_pred EECCCCcEEEEEECCCCCCEEEeecC
Confidence 99999999999998888888887653
No 217
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1.6e-10 Score=116.43 Aligned_cols=248 Identities=11% Similarity=0.132 Sum_probs=164.3
Q ss_pred CCCeEEEEEcCCCCEEEE-------EEcCCeEEEEEccCCceEEEEe---ccCCCCEEEEEEeeC-CCCEEEEEeCCCcE
Q 004270 181 GSSISSCVSSPALDVVAV-------GCSDGKIHVHNVRYDEELVTFT---HSMRGAVTALAFSSD-GQPLLASGASSGVI 249 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~-------g~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~l~fs~d-~~~~l~sg~~dg~i 249 (764)
-....+++|++++.++++ +..++.|.+||..+++...... ..+...+.+++++++ |+ ++++ +..+.|
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~-~~~~~l 94 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVA-DMRLGL 94 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEE-ETTTEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEE-ECCCCE
Confidence 445688999999987777 5778999999988877543222 012357899999999 76 5544 444579
Q ss_pred EEEECCCceeeee-eec---ccccCeeEEEEecCCCEEEEEcCCC-------------cEEEEEecCCCCCceeeEeccC
Q 004270 250 SIWNLEKRRLQSV-IRE---AHDNAIISLHFFANEPVLMSASADN-------------SIKMWIFDTTDGDPRLLRFRSG 312 (764)
Q Consensus 250 ~iwd~~~~~~~~~-~~~---~h~~~v~~l~~~~~~~~l~s~~~d~-------------~i~vw~~~~~~~~~~~~~~~~~ 312 (764)
.+||.. ++.... ... .....+.++++.+++++.++...++ ...+|.++.. +. .... ..
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~-~~ 169 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQV-DT 169 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEE-EE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEe-cc
Confidence 999988 665433 220 1224588999999998777765541 2455555543 22 2211 22
Q ss_pred CCCCCeeEEEe----cCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccc
Q 004270 313 HSAPPLCIRFY----ANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (764)
Q Consensus 313 h~~~v~~i~~~----~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (764)
+...+..++++ ++++.++.+ ..++.|.+|+.........
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------------------------ 213 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------------------------ 213 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE------------------------------------
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc------------------------------------
Confidence 33456889999 998766555 4678899998752110000
Q ss_pred cccceeEeeeCCceEEEEEccceeecceeecCCCCCC-CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP-TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466 (764)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~ 466 (764)
...+.....+. ..+..++++++|++.++...++.|.+|+..+++....+.
T Consensus 214 --------------------------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--- 264 (314)
T 1pjx_A 214 --------------------------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--- 264 (314)
T ss_dssp --------------------------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---
T ss_pred --------------------------ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---
Confidence 00000001112 456789999999988888888999999998777665553
Q ss_pred ccccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCC
Q 004270 467 ERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKG 505 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~ 505 (764)
.+...+.+++++++++.| ++...++.|..|+...
T Consensus 265 -----~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 265 -----CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp -----CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred -----CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 455789999999999955 4555668899999764
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=5e-11 Score=124.16 Aligned_cols=191 Identities=10% Similarity=0.058 Sum_probs=132.2
Q ss_pred EEEccCCCEEEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270 430 CTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 430 ~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 507 (764)
++++++++.++++..++ .|.+++...+.....+... .......+.+++++|++..|+.+..++.|+.||..++.
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~----~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL----GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC----CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec----cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 89999999999988866 7999998766543332100 01144567889999955556557778999999998776
Q ss_pred eeee----EecCcc---eEEEEEeec-CCEEEEEeCCCeEEEEEccCCeEEEEeecCC---------------CCeeEEE
Q 004270 508 LKSR----WEVGCS---LVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHT---------------DRITDFC 564 (764)
Q Consensus 508 ~~~~----~~~~~~---i~~~~~s~~-~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~---------------~~i~~l~ 564 (764)
.... ...... ...++++|+ +.++++-..++.|+.|+.... +..+.++. .....++
T Consensus 252 ~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 252 VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 4322 111111 239999995 555556667889999997654 33444432 3478899
Q ss_pred EcCCCcEEEEEe-CCCcEEEEEcCccceEEEEeeC----------------CceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 565 FSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVD----------------VSITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 565 ~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~----------------~~v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
++|+|+++++-+ .++.|+.|++.+|.... +..+ .....++++++|.++++-..++ .|+.++
T Consensus 330 ~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~-~Ir~i~ 407 (409)
T 3hrp_A 330 VDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK-AIRKYA 407 (409)
T ss_dssp ECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC-EEEEEE
T ss_pred EeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC-eEEEEE
Confidence 999999888777 88999999988887543 3332 2488999999976666555444 577665
Q ss_pred c
Q 004270 628 N 628 (764)
Q Consensus 628 ~ 628 (764)
+
T Consensus 408 ~ 408 (409)
T 3hrp_A 408 V 408 (409)
T ss_dssp E
T ss_pred e
Confidence 4
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.41 E-value=5e-10 Score=124.42 Aligned_cols=293 Identities=12% Similarity=0.099 Sum_probs=199.6
Q ss_pred CeEEEEEEeCCeEEEEecCCCeEEEecCCCCc-----------ceEEEEEeCCeEEEEEC-CeEEEEec--CceEEEecc
Q 004270 26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPK-----------KIRALASYRDYTFAAYG-NHIAVVKR--AHQVATWSR 91 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----------~I~~~~~~~~~~~~a~g-~~i~vw~~--~~~~~~~~~ 91 (764)
++.+.+++.++.+.-+|..+++.+........ .-..+++..+.+|+++. +.|+.+|. ++.+-+...
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence 45566666688999999999999987643211 12356777788888774 45999985 666666544
Q ss_pred c-c----cceE-EEEEeCCEEEEEec------CCcEEEEEccCCcccccceeeEecCC----------------------
Q 004270 92 H-S----AKVN-LLLLFGEHILSIDI------DGNMFIWAFKGIEENLAPVGHVKLDD---------------------- 137 (764)
Q Consensus 92 h-~----~~v~-~l~~~g~~l~s~~~------dg~v~vWd~~~~~~~~~~~~~~~~~~---------------------- 137 (764)
+ . ..+. .....+..++.++. +|.|..+|..+++... .+....
T Consensus 157 ~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W----~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW----RWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp TTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE----EEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred CcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEE----EeccCCCCcccccccccccccccccccc
Confidence 3 1 1222 22235667776654 6899999999998732 222111
Q ss_pred ----------ccccEEEEeCCCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEEEEcC--CC-----
Q 004270 138 ----------KFTPTCIMHPDTYLNKVIVGSQEG-------------------SLQLWNISTKKKLYEFKG--WG----- 181 (764)
Q Consensus 138 ----------~~~~~~~~~p~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--h~----- 181 (764)
......++.|++ +.+++++.++ .|..+|.++|+.+..++. |.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~--~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAEL--NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CceeEeCCCcccccceeEcCCC--CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 111245678887 7888887764 599999999999988864 21
Q ss_pred --CCeEEEEEcCCC---CEEEEEEcCCeEEEEEccCCceEEEEeccCCC----------CE-------------------
Q 004270 182 --SSISSCVSSPAL---DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG----------AV------------------- 227 (764)
Q Consensus 182 --~~i~~~~~sp~~---~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~----------~v------------------- 227 (764)
.....+....+| +.+++++.+|.+.++|..+|+.+..+...... ++
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 222333444577 68999999999999999999998877643111 11
Q ss_pred -----EEEEEeeCCCCEEEEEeC-------------------------------------------CCcEEEEECCCcee
Q 004270 228 -----TALAFSSDGQPLLASGAS-------------------------------------------SGVISIWNLEKRRL 259 (764)
Q Consensus 228 -----~~l~fs~d~~~~l~sg~~-------------------------------------------dg~i~iwd~~~~~~ 259 (764)
..++|+|++. ++++... .|.|..||+.+++.
T Consensus 391 G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp CSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred cccCCCCceEcCCCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 1468899887 6666432 27899999999999
Q ss_pred eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEE
Q 004270 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 260 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s 331 (764)
+.... +..++....+..++..++.++.|+.+++||..+.+ .+..+. ++.....-+.|..+|+.++.
T Consensus 470 ~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~----~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 470 AWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE----KLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc----eeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 88876 44555666677788889999999999999887763 443332 44444455667778865544
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=1.6e-11 Score=124.26 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
. |+.++| ++++|+++ .+|.|++||+.+........ .|...+.++.+.+.. ++++..||.|.+||++
T Consensus 89 ~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~--------~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 89 D-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT--------SFEKPVFQLKNVNNT--LVILNSVNDLSALDLR 154 (388)
T ss_dssp T-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE--------ECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred C-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc--------eeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence 5 999999 99999999 88999999998876544432 667778888776553 8889999999999999
Q ss_pred CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE--EEEe------e---cCCCCeeEEEEcCCCcEEE
Q 004270 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKF------E---GHTDRITDFCFSEDGKWLL 573 (764)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~--~~~~------~---~h~~~i~~l~~s~dg~~l~ 573 (764)
++.... ....|++++|||+| +++|..||.+++|+...++. .+++ . +|...|.++.|.+++.+++
T Consensus 155 ~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 155 TKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp TCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred CCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 887653 44689999999999 78899999999999988876 5666 3 4788999999999999998
Q ss_pred EEe
Q 004270 574 SSG 576 (764)
Q Consensus 574 s~s 576 (764)
+-+
T Consensus 230 ~y~ 232 (388)
T 1xip_A 230 VFG 232 (388)
T ss_dssp EEE
T ss_pred EEc
Confidence 643
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=5e-11 Score=121.60 Aligned_cols=275 Identities=12% Similarity=0.054 Sum_probs=176.0
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEE--cCCeEEEEEccCCceEEEEec------cCCCCEEEEEEeeCCCCEEEEE
Q 004270 172 KKLYEFKGWGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTH------SMRGAVTALAFSSDGQPLLASG 243 (764)
Q Consensus 172 ~~~~~~~~h~~~i~~~~~sp~~~~la~g~--~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~l~fs~d~~~~l~sg 243 (764)
+.+..+. .....++++|+|+++++.. .++.++||.+.+++ +..+.. .+-..+..++++++|+ ++++-
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D 84 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLD 84 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEE
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEc
Confidence 4455544 6789999999999888764 23435666665554 332211 1235799999999987 65554
Q ss_pred eC-----CCcEEEEECCCceeeeeeecc-----cccCeeEEEEecCCCEE-EEEc---CCCcEEEEEecCCCCCceeeEe
Q 004270 244 AS-----SGVISIWNLEKRRLQSVIREA-----HDNAIISLHFFANEPVL-MSAS---ADNSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 244 ~~-----dg~i~iwd~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~l-~s~~---~d~~i~vw~~~~~~~~~~~~~~ 309 (764)
.. ++.|.+||+.+++.+..+... +...+..+++.+++..+ ++.. .++.|.+|+.... +..+.
T Consensus 85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g----~~~r~ 160 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG----LAARV 160 (343)
T ss_dssp CHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC----CEEEE
T ss_pred CCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC----CEEEE
Confidence 33 578999999999877666521 22456899999865444 5544 5788999987654 34444
Q ss_pred ccCCCCCCe-eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccccc
Q 004270 310 RSGHSAPPL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (764)
Q Consensus 310 ~~~h~~~v~-~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (764)
..+|..... ...+.++|..+.+.+.++.++.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------------------------------------- 194 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------------------------------------- 194 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------------------------------------
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceecee----------------------------------------------
Confidence 444422111 134555777677677777665442
Q ss_pred ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEECcC---Cccc-ceec
Q 004270 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQS---GISR-GSYL 463 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-~i~i~~~~~---~~~~-~~~~ 463 (764)
..+..++++|+|+.|+++...+ .+..++... +... ..+.
T Consensus 195 ------------------------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 195 ------------------------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp ------------------------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred ------------------------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence 3456799999999998887766 555555321 1100 0000
Q ss_pred CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec--CcceEEEEEeecCCEEEEEeCCCeE
Q 004270 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVI 539 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~d~~i 539 (764)
. .....++.+...+++++++|.++++...++.|.+||..+++....... ...+..+++.+++.++++.+..+.+
T Consensus 239 ~--~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 239 S--KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp T--TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred c--ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 0 000013444567899999999999988999999999856654433333 2457899999998887777654443
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.40 E-value=2.2e-11 Score=123.15 Aligned_cols=257 Identities=10% Similarity=-0.006 Sum_probs=176.8
Q ss_pred cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEcCC---
Q 004270 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS----------QEGSLQLWNISTKKKLYEFKGW--- 180 (764)
Q Consensus 114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h--- 180 (764)
+|.+.|..+.+. +.++...... .++++|++ ++++++. .++.|.+||..+++.+.++...
T Consensus 47 ~vsvID~~t~~v----~~~i~vG~~P--~i~~spDg--~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGCGVT----LGHSLGAFLS--LAVAGHSG--SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEETTTTEE----EEEEEECTTC--EEEECTTS--SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred eEEEEECCCCeE----EEEEeCCCCC--ceEECCCC--CEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence 788999999988 7777766554 79999999 7788876 3688999999999999998643
Q ss_pred ----CCCeEEEEEcCCCCEEEEEEc--CCeEEE--EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004270 181 ----GSSISSCVSSPALDVVAVGCS--DGKIHV--HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (764)
Q Consensus 181 ----~~~i~~~~~sp~~~~la~g~~--dg~i~i--wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iw 252 (764)
......++++|||++++++.. +..|.+ +|..+ +..+... +. ..+.|+++..+++.+.||.+.+.
T Consensus 119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEEE
T ss_pred ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEEE
Confidence 123568999999999999875 467888 99887 4555432 21 23456776567777789999999
Q ss_pred ECCC-----ceeee----eeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccC----------C
Q 004270 253 NLEK-----RRLQS----VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG----------H 313 (764)
Q Consensus 253 d~~~-----~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~----------h 313 (764)
|+.+ ++... .+. ....+. . ++++..++..+. +.+.+.|...... ..+....- .
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~-vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~--~v~~~~~~~~~~~~~~~~~ 262 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQN-CSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA--TMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSC-BCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC--EEECCCCSSCTHHHHTTEE
T ss_pred ECccccccCCeEEEEeeeeee-CCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc--eEEEEEEeccccccccccc
Confidence 9987 54432 111 112232 3 667777666666 8898888754321 12221110 1
Q ss_pred CCCCeeEEEecCCCEEEEEeC---------CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccc
Q 004270 314 SAPPLCIRFYANGRHILSAGQ---------DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (764)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (764)
......++++||++.++.+.. ++.+.++|+.+.+....+..+
T Consensus 263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----------------------------- 313 (368)
T 1mda_H 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----------------------------- 313 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-----------------------------
T ss_pred cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-----------------------------
Confidence 112233789999988886543 234669998877655444221
Q ss_pred ccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEE-Ee-cCCcEEEEECcCCccccee
Q 004270 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GT-AGGWIERFNLQSGISRGSY 462 (764)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~-~~g~i~i~~~~~~~~~~~~ 462 (764)
.....++++|+|+++++ .. .++.|.++|+.+++.+..+
T Consensus 314 ----------------------------------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 314 ----------------------------------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp ----------------------------------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred ----------------------------------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 34678999999985544 44 4899999999999988877
Q ss_pred c
Q 004270 463 L 463 (764)
Q Consensus 463 ~ 463 (764)
.
T Consensus 354 ~ 354 (368)
T 1mda_H 354 E 354 (368)
T ss_dssp C
T ss_pred E
Confidence 4
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=6.9e-12 Score=126.98 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=133.5
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce-----ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS-----YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 499 (764)
..+..+++++...++++|+.++ +.+|++++...... +. ......+.. |+.++| ++++|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~---~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT---FKWEKEIPD-VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC---CSEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc---ceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence 4689999999999999999985 55598765541100 11 001124566 999999 88999988 889999
Q ss_pred EEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCC
Q 004270 500 VWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578 (764)
Q Consensus 500 iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~d 578 (764)
+||+.+........ +..++..+.+.+. .+|+++.||.+.+||+.++.... +...|++++|||+| ++.|..|
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 99998766544443 3366777666544 38889999999999999887653 34689999999999 6778899
Q ss_pred CcEEEEEcCccce--EEEE------e----eCCceEEEEEcCCCCeEEEEE
Q 004270 579 GSLRIWDVILARQ--IDAI------H----VDVSITALSLSPNMDVLATAH 617 (764)
Q Consensus 579 g~i~iwd~~~~~~--~~~~------~----~~~~v~~l~~sp~g~~lat~~ 617 (764)
|++++|+...++. .+.+ . +...|.++.|.+++.+|++=.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999998887775 5566 2 234599999999999998743
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=3.3e-10 Score=114.52 Aligned_cols=187 Identities=9% Similarity=-0.046 Sum_probs=130.9
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC------CCeE
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY------HGDI 498 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------dg~v 498 (764)
..+.+++++++|++++.. .+ .|.+||..++........ . .......+..++++|+|+++++... .+.|
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~-~---~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL-E---SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS-S---TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC-C---CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 468889999999877654 44 499999988765432210 0 0011346889999999997776542 2456
Q ss_pred EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEcc--CC-e-----EEEEeecCCCCeeEEEEcCCC
Q 004270 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--AL-R-----MVRKFEGHTDRITDFCFSEDG 569 (764)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~--~~-~-----~~~~~~~h~~~i~~l~~s~dg 569 (764)
..++ +++.............++|+|+++.++++ +.++.|.+||+. ++ + ....+.........++++++|
T Consensus 164 ~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 164 YHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG 241 (326)
T ss_dssp EEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred EEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC
Confidence 5666 45443333333556789999999877655 457899999986 55 3 233343344567889999999
Q ss_pred cEEEEEeCCCcEEEEEcCccceEEEEeeCC-ceEEEEEc-CCCCeEEEEEeCC
Q 004270 570 KWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLS-PNMDVLATAHVDQ 620 (764)
Q Consensus 570 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~s-p~g~~lat~~~d~ 620 (764)
++.++...++.|.+||. +++.+..+..+. .+++++|+ |+++.|.+++..+
T Consensus 242 ~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 98887767788999998 688888887766 49999998 8988877666554
No 225
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=1.3e-09 Score=113.41 Aligned_cols=251 Identities=10% Similarity=-0.002 Sum_probs=167.5
Q ss_pred EEEEecCceEEEeccc---------------ccceEEEEEe--CCEEEEEecCCcEEEEEccCCcccccceeeEecCCcc
Q 004270 77 IAVVKRAHQVATWSRH---------------SAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF 139 (764)
Q Consensus 77 i~vw~~~~~~~~~~~h---------------~~~v~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~ 139 (764)
...|.....+.++.|+ -.....|+++ |+.+++...++.|++||.+++.. ..... ....
T Consensus 99 ~F~y~~~~~v~tv~G~~~~~~~~dG~~~~a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~----~~~~~-~~~~ 173 (409)
T 3hrp_A 99 TFKYEQAQNVSTISGSASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV----TTVHP-GFKG 173 (409)
T ss_dssp CEEECCCEEEEEEEECTTCCSCCCBSTTTCCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE----EEEEE-TCCB
T ss_pred eEEEecccEEEEeecccCCCccCCCcHHHcccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE----EEeec-cCCC
Confidence 4455555556666655 2345677774 55555555568899999988766 22222 2233
Q ss_pred ccEEEEeCCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEE----cCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC
Q 004270 140 TPTCIMHPDTYLNKVIVGSQEG--SLQLWNISTKKKLYEF----KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213 (764)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~----~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~ 213 (764)
.. ++++|++ +.|+++..++ .|.+|+..++.....+ ......+.+++++|++..|.++..++.|..||..++
T Consensus 174 ~~-ia~~~~g--~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 174 GK-PAVTKDK--QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp CB-CEECTTS--SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred Cc-eeEecCC--CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence 33 7899999 7888888766 7999998766554444 324567789999996556666777899999999877
Q ss_pred ceEEEE---eccCCCCE--EEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc---------------ccCeeE
Q 004270 214 EELVTF---THSMRGAV--TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH---------------DNAIIS 273 (764)
Q Consensus 214 ~~~~~~---~~~~~~~v--~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h---------------~~~v~~ 273 (764)
...... .......- ..++|+|++..++++-..++.|+.|+.... ...+. ++ -.....
T Consensus 251 ~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 251 EVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp CEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEE
T ss_pred CEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeE
Confidence 633220 11111222 399999964437777777899999997644 22222 22 234789
Q ss_pred EEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCC---------------CCCCeeEEEecCCCEEEEEeCCCc
Q 004270 274 LHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH---------------SAPPLCIRFYANGRHILSAGQDRA 337 (764)
Q Consensus 274 l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h---------------~~~v~~i~~~~~~~~l~s~~~dg~ 337 (764)
+++.+++.++++-+ .++.|+.|++... . +..+.++ -..+..++++++|.++++-..++.
T Consensus 328 ia~d~dG~lyvad~~~~~~I~~~~~~~G----~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 328 MTVDEDGNFYIVDGFKGYCLRKLDILDG----Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp EEECTTCCEEEEETTTTCEEEEEETTTT----E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred EEEeCCCCEEEEeCCCCCEEEEEECCCC----E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 99999999888877 7889999975433 1 2222222 245889999999887787778888
Q ss_pred EEEEEe
Q 004270 338 FRLFSV 343 (764)
Q Consensus 338 i~i~d~ 343 (764)
|+.+++
T Consensus 403 Ir~i~~ 408 (409)
T 3hrp_A 403 IRKYAV 408 (409)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888765
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.38 E-value=2.5e-09 Score=110.79 Aligned_cols=297 Identities=8% Similarity=0.039 Sum_probs=191.8
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCC---------Ccce-EEEEEeCCeEEEEECC-eEEEEec--CceEEEecc
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQL---------PKKI-RALASYRDYTFAAYGN-HIAVVKR--AHQVATWSR 91 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~~~I-~~~~~~~~~~~~a~g~-~i~vw~~--~~~~~~~~~ 91 (764)
.++.+.+++.++.+..||.++++.+...... ...+ ..++...+.+|+++.+ .|+.+|. ++.+-+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 4566777777899999999999988655321 2233 4566777788888754 5999995 455544433
Q ss_pred cccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccc-----cEEEEeCCCCCCEEEEEeCCCcEEEE
Q 004270 92 HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFT-----PTCIMHPDTYLNKVIVGSQEGSLQLW 166 (764)
Q Consensus 92 h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~~~l~~~~~dg~i~iw 166 (764)
...........+..++.++.++.|..+|..+++. +.......... ...+.. + ..+++++.++.+..+
T Consensus 132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~--~--~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAV----KWTVNLDMPSLSLRGESAPTTA--F--GAAVVGGDNGRVSAV 203 (376)
T ss_dssp SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCE----EEEEECCC-----CCCCCCEEE--T--TEEEECCTTTEEEEE
T ss_pred CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcE----EEEEeCCCCceeecCCCCcEEE--C--CEEEEEcCCCEEEEE
Confidence 3322223345677888899999999999999887 33333221110 111222 2 478889999999999
Q ss_pred eCCCCeEEEEEcCCCCC----eE---EEEEcC--CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCC
Q 004270 167 NISTKKKLYEFKGWGSS----IS---SCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (764)
Q Consensus 167 d~~~~~~~~~~~~h~~~----i~---~~~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (764)
|..+|+.+......... +. .+..+| .+..+.+++.+|.+..+|..+|+.+...... ....+... +.
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~--~~ 278 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG---SVNDFIVD--GN 278 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC---CEEEEEEE--TT
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC---CCCCceEE--CC
Confidence 99999998887642110 00 011111 2467888888999999999999988776532 34444443 44
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 238 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
.++.++.++.|..+|..+++.+..........+...... +..|+.++.+|.+.++|..+. +.+.........+
T Consensus 279 -~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG----~~~~~~~~~~~~~ 351 (376)
T 3q7m_A 279 -RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDG----RFVAQQKVDSSGF 351 (376)
T ss_dssp -EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTC----CEEEEEECCTTCB
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCC----cEEEEEecCCCcc
Confidence 577788899999999999988766552222233333332 457888888999999987665 3333332222222
Q ss_pred eeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 318 LCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
...... .+..|+.++.+|.|..|+
T Consensus 352 ~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 352 QTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred eeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 221111 245788889999999886
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.3e-10 Score=116.55 Aligned_cols=192 Identities=11% Similarity=0.027 Sum_probs=134.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEE----EeC------
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS----AGY------ 494 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s----~~~------ 494 (764)
..+..++++++|+++++...++.|.+|+.. +........ . .......+..++++++|+++++ +..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~-~---~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR-Y---AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECE-E---TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEec-c---CCCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence 567889999999977766666899999986 543222110 0 0011234678999999998886 321
Q ss_pred -------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCC------CeEEEEEccCCeEE--EEe-ecCCC
Q 004270 495 -------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD------LVIRLFDVVALRMV--RKF-EGHTD 558 (764)
Q Consensus 495 -------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d------~~i~v~d~~~~~~~--~~~-~~h~~ 558 (764)
.+.|..+|..+++..... .......++|+||++.|+++... +.|++|++..+... ..+ ....+
T Consensus 161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred ccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 256777777667655444 33566789999999988877665 78999998765421 112 11234
Q ss_pred CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
....++++++|++.++. .++ |.+|+. +|+.+..+..+..+.+++|+|+++.|..++.++ ++-.+
T Consensus 240 ~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~--l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC--LWMLP 303 (305)
T ss_dssp CCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE--EEEEE
T ss_pred CCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe--EEEEE
Confidence 46779999999955544 454 999997 688888888877899999999999888887654 55443
No 228
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.37 E-value=1.1e-10 Score=122.39 Aligned_cols=309 Identities=11% Similarity=0.086 Sum_probs=200.5
Q ss_pred EEEEEcCCeEEEEEccCCceEEEEeccC--------------------------------------CCCEEEEEEee---
Q 004270 196 VAVGCSDGKIHVHNVRYDEELVTFTHSM--------------------------------------RGAVTALAFSS--- 234 (764)
Q Consensus 196 la~g~~dg~i~iwd~~~~~~~~~~~~~~--------------------------------------~~~v~~l~fs~--- 234 (764)
+.+|+..|.++|+-+.+++.++.+.... .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5678888999999999888877764110 11222344454
Q ss_pred --CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEE-e-cCCCEEEEEc------------------CCCcE
Q 004270 235 --DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF-F-ANEPVLMSAS------------------ADNSI 292 (764)
Q Consensus 235 --d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~-~-~~~~~l~s~~------------------~d~~i 292 (764)
||++++++...++.|.+.|+.+.+....+.......+..+++ . |++.++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 888555555567789999999999888555334456888888 4 8999998884 24578
Q ss_pred EEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEE-EEEeecccccccccchhhhHHHhhccchhhhh
Q 004270 293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR-LFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371 (764)
Q Consensus 293 ~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (764)
.+.|.++. +......--. ....++++|+|+++++++.+...- ..+..+.
T Consensus 178 tvID~~t~----~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~------------------------- 227 (595)
T 1fwx_A 178 TAVDADKW----EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA------------------------- 227 (595)
T ss_dssp EEEETTTT----EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-------------------------
T ss_pred EEEECCCC----eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccc-------------------------
Confidence 88877754 3444333212 567889999999999988664210 0000000
Q ss_pred ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 004270 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451 (764)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~ 451 (764)
.....+.+.+..... .+.++|++... +.|.+.
T Consensus 228 -------------------------~~~d~v~V~~~~~~~-------------------~~v~~Gk~~~i----~~V~VI 259 (595)
T 1fwx_A 228 -------------------------AEMDHIVVFNIAEIE-------------------KAIAAGDYQEL----NGVKVV 259 (595)
T ss_dssp -------------------------CSEEEEEEEEHHHHH-------------------HHHHHTCSEEE----TTEEEE
T ss_pred -------------------------cccceEEEeecccee-------------------EeccCCCeeEE----CcEEEE
Confidence 000111122211110 01223443333 558999
Q ss_pred ECcC--Ccc-cceecCccccccccccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCC------------eeeeEecC
Q 004270 452 NLQS--GIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD------------LKSRWEVG 515 (764)
Q Consensus 452 ~~~~--~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~------------~~~~~~~~ 515 (764)
|..+ +.. ...+. -.....++.++|||++++.++ .+.+|.++|+.+.+ ........
T Consensus 260 D~~~~~~~~~~~~Ip---------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 260 DGRKEASSLFTRYIP---------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp ECSGGGCCSSEEEEE---------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred eCcccCCceeEEEEe---------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 9987 443 23332 233556899999999887766 67899999999653 45566666
Q ss_pred cceEEEEEeecCCEEEEEeCCCeEEEEEccC----------CeEEEEeecCCCCe-----eEEEEcCCCcEEEEEeC---
Q 004270 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVA----------LRMVRKFEGHTDRI-----TDFCFSEDGKWLLSSGM--- 577 (764)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~----------~~~~~~~~~h~~~i-----~~l~~s~dg~~l~s~s~--- 577 (764)
.....++|+++|....+..-|+.|.+||+++ .+.+.++..|-.+- ..+.++|||+||+++..
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 8899999999994445566799999999987 66788887765432 23456899999998753
Q ss_pred CCc----------EEEEEcCccce
Q 004270 578 DGS----------LRIWDVILARQ 591 (764)
Q Consensus 578 dg~----------i~iwd~~~~~~ 591 (764)
|+. -.++|+..+++
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSSSC
T ss_pred cccccCCCCCCCcceEEEcCCCcE
Confidence 543 27899966553
No 229
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.36 E-value=3.8e-06 Score=97.97 Aligned_cols=564 Identities=12% Similarity=0.059 Sum_probs=308.0
Q ss_pred CCCcceEEecCCeEEEEEEeCCeEEEEecCCC--------eEEEecCCCCcceEEEEEeC------CeEEEEECCe----
Q 004270 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKL--------NLVLVGPQLPKKIRALASYR------DYTFAAYGNH---- 76 (764)
Q Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~--------~~~~~~~~~~~~I~~~~~~~------~~~~~a~g~~---- 76 (764)
..+|-++.+.+++++.++|.-|-=.+|.+... +++...+ .-+||..+++-. ...++++|..
T Consensus 326 ~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 326 TSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGS 404 (1158)
T ss_dssp CSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCE
T ss_pred ccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCe
Confidence 45677888888889999998555556665543 3444443 357899888753 2566666643
Q ss_pred EEEEecCceE---EE--ecccccceEEEEE-----eCCEEEEEecCCcEEEEEccCCcccccceeeEecC--CccccEEE
Q 004270 77 IAVVKRAHQV---AT--WSRHSAKVNLLLL-----FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD--DKFTPTCI 144 (764)
Q Consensus 77 i~vw~~~~~~---~~--~~~h~~~v~~l~~-----~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~ 144 (764)
+++...+-.. .. +.+ -..+..+.. ...+|+....+.+ .|+.+...+. ..++.. .....+++
T Consensus 405 L~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~v-----eev~~~gf~~~~~TL~ 477 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEEV-----EETELMGFVDDQQTFF 477 (1158)
T ss_dssp EEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTEE-----EEECCTTCCSSSCEEE
T ss_pred EEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCcc-----cccccccccCCCCcEE
Confidence 8888765332 22 332 244555542 2467777666655 5666643221 222111 01112222
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC
Q 004270 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM 223 (764)
Q Consensus 145 ~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~ 223 (764)
+..-+. +.++=....+ |++.+....+.+..++.. ...|...+.+. ..++.++ ++.+.++.+..++.........
T Consensus 478 ~~~l~~-~~ivQVt~~~-Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l 552 (1158)
T 3ei3_A 478 CGNVAH-QQLIQITSAS-VRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEM 552 (1158)
T ss_dssp EEEETT-TEEEEEESSC-EEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEEC
T ss_pred EEEcCC-CeEEEEecCE-EEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCC
Confidence 221111 3566565554 888887767778777643 34677777664 4666665 6788888887664332222223
Q ss_pred CCCEEEEEEeeCC-----CCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeeEEEEe--cCCCEEEEEcCCCcEEEE
Q 004270 224 RGAVTALAFSSDG-----QPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMW 295 (764)
Q Consensus 224 ~~~v~~l~fs~d~-----~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d~~i~vw 295 (764)
...|.|+++.|.. ..++++|.. |++|+|+++.+.+.+.....+......++.+. ....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 5689999998642 238999996 99999999987766654432222344444443 234588899999999888
Q ss_pred EecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCc
Q 004270 296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375 (764)
Q Consensus 296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (764)
.++...+...-.+...--..++.-..+...+..-+.+..++...++.-.. .. .+ ..+...+
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l--~~----------------s~l~~~~ 693 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KL--VF----------------SNVNLKE 693 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SE--EE----------------EEBSSSC
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ce--EE----------------eccChHH
Confidence 88765443322222212234555444544444433344455555544221 10 00 0111112
Q ss_pred eeEeeeccccccc-ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC---------
Q 004270 376 VIAFDCAEIRERD-WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--------- 445 (764)
Q Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~--------- 445 (764)
+..+..- .... .+.++... ++.+++..+.+.. ....+.. .-...++.++++|..+.++++..+
T Consensus 694 v~~~~~F--~se~~~~g~v~~~--~~~LrI~~i~~~~--~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~ 766 (1158)
T 3ei3_A 694 VNYMCPL--NSDGYPDSLALAN--NSTLTIGTIDEIQ--KLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 766 (1158)
T ss_dssp CCEEEEE--CCSSSTTEEEEEC--SSCEEEEEECCSS--SEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSS
T ss_pred hceEecc--CcccCCCcEEEEc--CCceEEEEecccC--CeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccc
Confidence 2111111 1111 12333222 2346666554321 1111100 112577888888887776665432
Q ss_pred ----------------------------------------CcEEEEECcCCcccceecCccccccccccCcEEEEE---E
Q 004270 446 ----------------------------------------GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA---C 482 (764)
Q Consensus 446 ----------------------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~ 482 (764)
+.|+++|..+.+....+.. .....+.+++ |
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l-------~~nE~~~sv~~v~~ 839 (1158)
T 3ei3_A 767 TTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQF-------LQNEYALSLVSCKL 839 (1158)
T ss_dssp EEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEEC-------CTTEEEEEEEEECC
T ss_pred cchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeC-------CCCcceEEEEEEEE
Confidence 1244455444444333321 2223344444 3
Q ss_pred CCC-CCEEEEEe----------CCCeEEEEECCCCCe--eeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE
Q 004270 483 DST-NTLMISAG----------YHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (764)
Q Consensus 483 ~~~-~~~l~s~~----------~dg~v~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~ 549 (764)
..+ ..+++.|. ..|.|.+|++..+++ +...+..+++++++--. | +|++|- ...|++|++...+.
T Consensus 840 ~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~i-g~~l~vy~l~~~~~ 916 (1158)
T 3ei3_A 840 GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G-KLLASI-NSTVRLYEWTTEKE 916 (1158)
T ss_dssp TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET-T-EEEEEE-TTEEEEEEECTTSC
T ss_pred ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C-EEEEEc-CCEEEEEECCCCce
Confidence 332 46777775 347899999875543 33334557888876542 4 555544 57899999987654
Q ss_pred EE-EeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEE--EcCccceEEEEeeCC--ceEEEEEcCCCCeEEEEEeCCCeEE
Q 004270 550 VR-KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW--DVILARQIDAIHVDV--SITALSLSPNMDVLATAHVDQNGVY 624 (764)
Q Consensus 550 ~~-~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iw--d~~~~~~~~~~~~~~--~v~~l~~sp~g~~lat~~~d~~~i~ 624 (764)
++ ....+ ..|..+.....+.+++.|+.-..|.+. +...+++...-+... .++++.|-.++ .++.+..+++ +.
T Consensus 917 L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gN-l~ 993 (1158)
T 3ei3_A 917 LRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFN-LF 993 (1158)
T ss_dssp EEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSE-EE
T ss_pred EEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCc-EE
Confidence 44 22112 224433333356788888866666664 444455444433323 38888887654 6666777774 88
Q ss_pred EEeccc
Q 004270 625 LWVNRC 630 (764)
Q Consensus 625 lW~~~~ 630 (764)
+.....
T Consensus 994 vl~~~~ 999 (1158)
T 3ei3_A 994 VCQKDS 999 (1158)
T ss_dssp EEEECT
T ss_pred EEecCC
Confidence 776553
No 230
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=5.8e-10 Score=111.17 Aligned_cols=232 Identities=9% Similarity=0.055 Sum_probs=155.0
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCC
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (764)
..-..+..|++++..++++...++.|..||..+++.. .+. ....+.+++++++++++++. ++.|.+|+.+.. .
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g--~ 84 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT--MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQ--S 84 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE--CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTT--E
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe--CCCceEEEEECCCCCEEEEE--CCeEEEEECCCC--c
Confidence 3456788999976547778778899999999887653 332 45789999999999955554 567888876543 1
Q ss_pred ceeeEeccC--CCCCCeeEEEecCCCEEEEEeCC---------CcEEEEEeecccccccccchhhhHHHhhccchhhhhc
Q 004270 304 PRLLRFRSG--HSAPPLCIRFYANGRHILSAGQD---------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 372 (764)
Q Consensus 304 ~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (764)
.+.+..... ....++.++++|+|++.++.... ..-.+|.+........
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--------------------- 143 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--------------------- 143 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---------------------
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---------------------
Confidence 122222111 12346789999999866654322 2234444322110000
Q ss_pred cCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEE
Q 004270 373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERF 451 (764)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~~g~i~i~ 451 (764)
+. ........++++|+|+.+++. +.++.|.+|
T Consensus 144 -------------------------------~~----------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~ 176 (297)
T 3g4e_A 144 -------------------------------YF----------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 176 (297)
T ss_dssp -------------------------------EE----------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred -------------------------------Ee----------------eccccccceEEcCCCCEEEEecCCCCcEEEE
Confidence 00 001446789999999977554 557899999
Q ss_pred EC--cCCccc--ceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEe-e
Q 004270 452 NL--QSGISR--GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH-R 525 (764)
Q Consensus 452 ~~--~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s-~ 525 (764)
++ .++... ..+. ....+.....+++++++|++.++....+.|..||..+++.+..+..+ ..+++++|. |
T Consensus 177 ~~d~~~G~~~~~~~~~-----~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~ 251 (297)
T 3g4e_A 177 DYDLQTGQISNRRSVY-----KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK 251 (297)
T ss_dssp EECTTTCCEEEEEEEE-----ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG
T ss_pred eccCCCCcccCcEEEE-----ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC
Confidence 87 455432 1111 01134467889999999998888888889999999999999988877 689999998 8
Q ss_pred cCCEEEEEeC
Q 004270 526 VNGLLATVAD 535 (764)
Q Consensus 526 ~~~~la~~~~ 535 (764)
+++.|.+++.
T Consensus 252 d~~~L~vt~~ 261 (297)
T 3g4e_A 252 NYSEMYVTCA 261 (297)
T ss_dssp GGCEEEEEEB
T ss_pred CCCEEEEEcC
Confidence 8887776654
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.34 E-value=1.5e-09 Score=120.97 Aligned_cols=296 Identities=11% Similarity=0.096 Sum_probs=192.0
Q ss_pred CeEEEEEEeCCeEEEEecCCCeEEEecCCCCc----------c-eEEEEEeCCeEEEEE-CCeEEEEec--CceEEEecc
Q 004270 26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPK----------K-IRALASYRDYTFAAY-GNHIAVVKR--AHQVATWSR 91 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~-I~~~~~~~~~~~~a~-g~~i~vw~~--~~~~~~~~~ 91 (764)
++.+.+++.++.+.-+|..+|+.+........ . -..+++..+.+|+++ .+.|+.+|. ++.+-+...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 55666677788999999999999987643211 1 134567777888877 455999985 566554332
Q ss_pred --cc---cceE-EEEEeCCEEEEEe------cCCcEEEEEccCCcccccceeeEe-------------------------
Q 004270 92 --HS---AKVN-LLLLFGEHILSID------IDGNMFIWAFKGIEENLAPVGHVK------------------------- 134 (764)
Q Consensus 92 --h~---~~v~-~l~~~g~~l~s~~------~dg~v~vWd~~~~~~~~~~~~~~~------------------------- 134 (764)
+. ..+. +-...+..++.++ .+|.|..||..+++....... ..
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~-~~~~p~~~~~~~~~~~~~~~~~g~~w~ 228 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT-VPGDPKLPPEGKGMEIAAKTWFGDAYV 228 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES-SCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecc-cCCCcccccccccccccccccCCceee
Confidence 11 1111 1112355555554 368899999999987332110 00
Q ss_pred ---cCCccccEEEEeCCCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEEcC--CC-------CC
Q 004270 135 ---LDDKFTPTCIMHPDTYLNKVIVGSQEGS-------------------LQLWNISTKKKLYEFKG--WG-------SS 183 (764)
Q Consensus 135 ---~~~~~~~~~~~~p~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~--h~-------~~ 183 (764)
.........++.|+. +.+++++.++. |..||.++|+.+..++. |. .+
T Consensus 229 ~~~~g~~~w~~~~~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 229 EQGGGGTAWDSFAYDPEL--NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred ecCCCCccccceeEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 000111246688877 78999988764 99999999999998864 21 22
Q ss_pred eEEEEEcCCCC---EEEEEEcCCeEEEEEccCCceEEEEeccCCCCE---------------------------------
Q 004270 184 ISSCVSSPALD---VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV--------------------------------- 227 (764)
Q Consensus 184 i~~~~~sp~~~---~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v--------------------------------- 227 (764)
........+|+ .++.++.+|.++++|..+|+.+...........
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22223333564 788999999999999999998865543211111
Q ss_pred -----EEEEEeeCCCCEEEEEeC---------------------------------------------CCcEEEEECCCc
Q 004270 228 -----TALAFSSDGQPLLASGAS---------------------------------------------SGVISIWNLEKR 257 (764)
Q Consensus 228 -----~~l~fs~d~~~~l~sg~~---------------------------------------------dg~i~iwd~~~~ 257 (764)
..++|+|+.. ++++... +|.|..||+.++
T Consensus 387 Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp CSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred cccCCCcceECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 1268888877 6665421 377999999999
Q ss_pred eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEE
Q 004270 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILS 331 (764)
Q Consensus 258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s 331 (764)
+.+.... +..++..-.+...+.+++.++.|+.++.||.+++ +.+..+. ++.....-+.|..+|+..+.
T Consensus 466 ~~~W~~~--~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG----~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 466 QAAWEVP--YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTG----EKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEeEcc--CCCCccCccceECCCEEEEECCCCcEEEEECCCC----ccceeeeCCCCcccCceEEEECCEEEEE
Confidence 9988887 3334444466667889999999999999988776 3443332 33333345777778865443
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=6.6e-11 Score=120.73 Aligned_cols=264 Identities=10% Similarity=0.034 Sum_probs=168.1
Q ss_pred cCeeEEEEecCCCEEEEEc--CCCcEEEEEecCCCCCceeeE------eccCCCCCCeeEEEecCCCEEEEEeC-----C
Q 004270 269 NAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLR------FRSGHSAPPLCIRFYANGRHILSAGQ-----D 335 (764)
Q Consensus 269 ~~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~------~~~~h~~~v~~i~~~~~~~~l~s~~~-----d 335 (764)
..+..++++++++++++.. .++.+++|.++ .+ .+.. ...+|...+..++++++++++++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g--~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QD--GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TT--EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CC--CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 6789999999999888864 23437777776 22 2221 11245578899999999876555433 4
Q ss_pred CcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecce
Q 004270 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (764)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 415 (764)
+.|.+||+.+++....+. +..
T Consensus 93 ~~i~~~d~~tg~~~~~~~-----------------------------------------------------~~~------ 113 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIY-----------------------------------------------------LPP------ 113 (343)
T ss_dssp CEEEEEETTTTEEEEEEE-----------------------------------------------------CCT------
T ss_pred CeEEEEECCCCeEEEEEE-----------------------------------------------------CCh------
Confidence 678888876554322211 000
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEe----cCCcEEEEECcCCcccceecCccccccccccCcEE-EEEECCCCCEEE
Q 004270 416 ILRPCPENPTAVKACTISACGNFAVLGT----AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVACDSTNTLMI 490 (764)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~ 490 (764)
....+...+..+++++++..++++. .++.|.+||+.++.....+. .|..... ...+.+++..+.
T Consensus 114 ---~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~--------~~~~~~~~~~~~~~~g~~~~ 182 (343)
T 2qe8_A 114 ---PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ--------GYPGIAPEDIDLVIDGVPVQ 182 (343)
T ss_dssp ---TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT--------TCTTTSCCSCCCEETTEECB
T ss_pred ---hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec--------CCCcccccccceeECCEEEE
Confidence 0001224567899998765655544 57899999999887655442 2211100 023344666677
Q ss_pred EEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC-eEEEEEccC---Ce-----EEE--EeecCCCC
Q 004270 491 SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL-VIRLFDVVA---LR-----MVR--KFEGHTDR 559 (764)
Q Consensus 491 s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~-~i~v~d~~~---~~-----~~~--~~~~h~~~ 559 (764)
+.+.++.++.|. ..+..++++|+++.|+++..++ .+..++... +. ... ...++.+.
T Consensus 183 ~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~ 249 (343)
T 2qe8_A 183 IGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI 249 (343)
T ss_dssp EECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred eccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence 777788776653 2457899999999888887665 555555321 10 000 11234456
Q ss_pred eeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC--CceEEEEEcCCCCeEEEEEeC
Q 004270 560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 560 i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d 619 (764)
...++++++|+++++...++.|.+||..+|+.......+ ..+.+++|.++|.++++....
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 778999999999999889999999998667654444332 238999999999887777544
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=1.9e-10 Score=129.33 Aligned_cols=246 Identities=15% Similarity=0.111 Sum_probs=147.6
Q ss_pred CCCEEEEEEeeCCCCEEE-EEeCC----CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCc-------
Q 004270 224 RGAVTALAFSSDGQPLLA-SGASS----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS------- 291 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~-sg~~d----g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~------- 291 (764)
...+..++|||||+ +|| +.+.. ..|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 128 ~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 128 TTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp CCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred cEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 34688899999999 555 33333 479999999998654322 22224678999 9999988887743
Q ss_pred ------EEEEEecCCCCCceeeEeccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhc
Q 004270 292 ------IKMWIFDTTDGDPRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364 (764)
Q Consensus 292 ------i~vw~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (764)
|++|++.+......++..... |......+.++|||++|+.....+.
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--------------------------- 256 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST--------------------------- 256 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS---------------------------
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC---------------------------
Confidence 777766554333334443333 4445566777777776654332110
Q ss_pred cchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec
Q 004270 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (764)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 444 (764)
.
T Consensus 257 -------------------------------------------------------------------------------~ 257 (693)
T 3iuj_A 257 -------------------------------------------------------------------------------S 257 (693)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCcEEEEECcCCc-ccceecCccccccccccCcEEEEEECCCCCEEEEEe-C---CCeEEEEECCCCCe--eeeE-ecCc
Q 004270 445 GGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-Y---HGDIKVWDFKGRDL--KSRW-EVGC 516 (764)
Q Consensus 445 ~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~---dg~v~iwd~~~~~~--~~~~-~~~~ 516 (764)
...|+++++.++. ....+. .+....... +++++..|+..+ . .+.|..+++.++.. ...+ .+..
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~--------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQ--------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEE--------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CcEEEEEECCCCCCceEEEe--------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 1133333333321 111111 222333333 445555444333 3 36799999987754 2333 3334
Q ss_pred ceEEEEEeecCCEEEEEeCCC---eEEEEEccCCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeCC----CcEEEEEcCc
Q 004270 517 SLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMD----GSLRIWDVIL 588 (764)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~d~---~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~d----g~i~iwd~~~ 588 (764)
.+. .|+++++.|+....++ .|++||+..+. .+.+. .+.+.+..+.++++++.|+....+ ++|+.||+.+
T Consensus 329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 329 QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp SCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred CEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 443 8999999887776544 78999988554 44443 344567788889998877655444 7899999988
Q ss_pred cce
Q 004270 589 ARQ 591 (764)
Q Consensus 589 ~~~ 591 (764)
++.
T Consensus 406 g~~ 408 (693)
T 3iuj_A 406 GAI 408 (693)
T ss_dssp CCE
T ss_pred CeE
Confidence 764
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=3.5e-10 Score=113.27 Aligned_cols=255 Identities=12% Similarity=0.043 Sum_probs=154.7
Q ss_pred ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~ 293 (764)
..+..+..+ ........|+++|+.+++++..++.|..|+. +++. ..+. .+...+..+++.++|+++++...++.|.
T Consensus 35 ~~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 35 ARLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLL-DATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEE-ESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEe-CCCCccceeeECCCCCEEEEECCCCEEE
Confidence 344445444 4567899999999867788888899999998 4543 3343 4566789999999999777766667888
Q ss_pred EEEecCCCCCceeeEe-ccC-CCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhh
Q 004270 294 MWIFDTTDGDPRLLRF-RSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371 (764)
Q Consensus 294 vw~~~~~~~~~~~~~~-~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (764)
.|+.+ +....+.. ..+ ....+..+++.++|+..++-..-|+..-+. .....
T Consensus 111 ~~~~~---g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~--~~~~~---------------------- 163 (305)
T 3dr2_A 111 RSDAD---GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ--GCPAD---------------------- 163 (305)
T ss_dssp EECTT---SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGG--SCCCC----------------------
T ss_pred EECCC---CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccc--ccccc----------------------
Confidence 88654 22222211 111 124577899999988777521001000000 00000
Q ss_pred ccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC------
Q 004270 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG------ 445 (764)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~------ 445 (764)
.....+.++.++..+....... .......++++|+|+.++++...
T Consensus 164 -----------------------~~~~~~~v~~~d~~~g~~~~~~------~~~~p~gl~~spdg~~lyv~~~~~~~~~~ 214 (305)
T 3dr2_A 164 -----------------------PELAHHSVYRLPPDGSPLQRMA------DLDHPNGLAFSPDEQTLYVSQTPEQGHGS 214 (305)
T ss_dssp -----------------------CSSSCEEEEEECSSSCCCEEEE------EESSEEEEEECTTSSEEEEEECCC---CC
T ss_pred -----------------------cccCCCeEEEEcCCCCcEEEEe------cCCCCcceEEcCCCCEEEEEecCCcCCCC
Confidence 0000011122221111110000 01456789999999988887765
Q ss_pred CcEEEEECcCCccc--ceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEE
Q 004270 446 GWIERFNLQSGISR--GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523 (764)
Q Consensus 446 g~i~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~ 523 (764)
+.|.+|++..+... ..+. ....+...+++++++|++.++ ..+ .|.+|+. .++.+..+..+..+.+++|
T Consensus 215 ~~i~~~~~~~~~l~~~~~~~-------~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f 284 (305)
T 3dr2_A 215 VEITAFAWRDGALHDRRHFA-------SVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPGTASNCTF 284 (305)
T ss_dssp CEEEEEEEETTEEEEEEEEE-------CCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSSCCCEEEE
T ss_pred CEEEEEEecCCCccCCeEEE-------ECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCCceeEEEE
Confidence 78999998765411 1111 112344567899999995554 444 4999997 5777777777777899999
Q ss_pred eecCCEEEEEeCCCe
Q 004270 524 HRVNGLLATVADDLV 538 (764)
Q Consensus 524 s~~~~~la~~~~d~~ 538 (764)
+++++.|.+++.++.
T Consensus 285 ~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 285 DQAQQRLFITGGPCL 299 (305)
T ss_dssp CTTSCEEEEEETTEE
T ss_pred eCCCCEEEEEcCCeE
Confidence 999998888887643
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.29 E-value=2.1e-11 Score=124.06 Aligned_cols=300 Identities=14% Similarity=0.078 Sum_probs=188.2
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 004270 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE 265 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 265 (764)
+..+..++ .|.+++.++.|..|| .+++.+..+..+ ...+.++...++|. +..++.+ |..+|. +++......
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~~- 94 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSG-EIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRFD- 94 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGG-GEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGSC-
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecC-CCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEEE-
Confidence 34454555 466777788899999 888876655443 34557777777775 5555544 888886 666554443
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
..........+. +..+..++.++.+..++.+ . ........+...+.++...+++. +..++.++.+..+|..
T Consensus 95 ~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~- 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G----TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD- 165 (330)
T ss_dssp C-----CCEEEE--TTEEEEECTTSEEEEECTT-S----CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-
T ss_pred CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C----CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-
Confidence 222223333333 4467778888888888654 2 22323333444566667776776 6667777888888865
Q ss_pred ccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCC
Q 004270 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (764)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (764)
+........ ...
T Consensus 166 g~~~~~~~~--------------------------------------------------------------------~~~ 177 (330)
T 3hxj_A 166 GTEKWRFKT--------------------------------------------------------------------NDA 177 (330)
T ss_dssp SCEEEEEEC--------------------------------------------------------------------SSC
T ss_pred CCEeEEEec--------------------------------------------------------------------CCC
Confidence 322111100 012
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 004270 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 505 (764)
.+.++.+.++|.. .+++ +.+..+| .++.....+. .....+.++..++++. +..++.++.+..+|. +
T Consensus 178 ~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~--------~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~ 243 (330)
T 3hxj_A 178 ITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNFY--------AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D 243 (330)
T ss_dssp CCSCCEECTTCCE-EEES--SSEEEEC-TTSCEEEEEC--------CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-T
T ss_pred ceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEEc--------cCCcceeceEECCCCe-EEEEcCCCeEEEECC-C
Confidence 3444556667764 4455 8899999 6766655543 3345677888888876 555666788888874 5
Q ss_pred CCeeeeEecCcc-eEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEE
Q 004270 506 RDLKSRWEVGCS-LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584 (764)
Q Consensus 506 ~~~~~~~~~~~~-i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iw 584 (764)
++.+..+..... +..+.+.+ +..|.+++.++.+..+|. +++.+..+......+.++...++|++. .++.+|.+++.
T Consensus 244 g~~~~~~~~~~~~~~~~~~~~-~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~ 320 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIGN-TDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYAL 320 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECT-TSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEE
T ss_pred CCEeEEeeCCCCccccceEcC-CCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEE
Confidence 666665554432 33444443 446777888889999996 677777776666678888888888754 58889999988
Q ss_pred EcCc
Q 004270 585 DVIL 588 (764)
Q Consensus 585 d~~~ 588 (764)
..+.
T Consensus 321 ~~~~ 324 (330)
T 3hxj_A 321 FNLE 324 (330)
T ss_dssp EC--
T ss_pred eccc
Confidence 7653
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.29 E-value=1.1e-10 Score=118.79 Aligned_cols=294 Identities=16% Similarity=0.062 Sum_probs=194.5
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeE-EEEECCeEEEEecC-ceEEEecccccceEEEEEe
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT-FAAYGNHIAVVKRA-HQVATWSRHSAKVNLLLLF 102 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~-~~a~g~~i~vw~~~-~~~~~~~~h~~~v~~l~~~ 102 (764)
.+..+.+++.++.+..|| .+++.+.........+.+++..+++. ++++.+ |..+|.. +.+..+..+..........
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-l~~~d~~g~~~~~~~~~~~~~~~~~~~ 106 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK-VYAINPDGTEKWRFDTKKAIVSDFTIF 106 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE-EEEECCCGGGGGGSCC-----CCEEEE
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc-EEEECCCCcEEEEEECCCCcccCceEE
Confidence 455666777788999999 88888777654445567888876654 455555 8888753 2222222222222333345
Q ss_pred CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Q 004270 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS 182 (764)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 182 (764)
+..|..++.++.+..+|.. ++. ..............+..+++ .+++++.++.|..+|.. ++.+..+.....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~----~~~~~~~~~~~~~~~~~~~g---~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTE----KWRFKTKKAIYATPIVSEDG---TIYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCE----EEEEECSSCCCSCCEECTTS---CEEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCE----EEEEcCCCceeeeeEEcCCC---EEEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 7888888889999999988 554 33333344444445555555 48888888999999998 888888876667
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004270 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262 (764)
Q Consensus 183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~ 262 (764)
.+.++...+++.+.+ ++ +.|..+| .+++.+..+... ...+.++...++|. +..++.++.|..+|. +++....
T Consensus 178 ~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g~~~~~ 249 (330)
T 3hxj_A 178 ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGT--IYVTSLDGHLYAINP-DGTEKWR 249 (330)
T ss_dssp CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSC--EEEEETTTEEEEECT-TSCEEEE
T ss_pred ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCe--EEEEcCCCeEEEECC-CCCEeEE
Confidence 788888888877544 44 7899999 778877776654 45688888888876 566777888988884 5555555
Q ss_pred eecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 263 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
.. .....+..+...+++ .|..++.++.+..++. ++ +.+.........+.++...++|+ |..++.+|.+++..
T Consensus 250 ~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~---~g--~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 250 FK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP---DG--TEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALF 321 (330)
T ss_dssp EE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT---TS--CEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEE
T ss_pred ee-CCCCccccceEcCCC-eEEEecCCCCEEEECC---CC--cEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEe
Confidence 54 333344455555555 5667777888888863 22 23333333455667777767775 66688899888876
Q ss_pred eec
Q 004270 343 VIQ 345 (764)
Q Consensus 343 ~~~ 345 (764)
...
T Consensus 322 ~~~ 324 (330)
T 3hxj_A 322 NLE 324 (330)
T ss_dssp C--
T ss_pred ccc
Confidence 543
No 237
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=3e-10 Score=127.58 Aligned_cols=192 Identities=8% Similarity=0.062 Sum_probs=131.3
Q ss_pred EEEEEccCCCEEEEEecCC-------------cEEEEECcCCcccceecCcccccccc-ccCcEEEEEECCCCCEEEEEe
Q 004270 428 KACTISACGNFAVLGTAGG-------------WIERFNLQSGISRGSYLDMSERSNYA-HNGEVVGVACDSTNTLMISAG 493 (764)
Q Consensus 428 ~~~~~s~~g~~l~~g~~~g-------------~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~ 493 (764)
..++|+ ||+.|+.++.+. .|++|++.++........ .... |.....++.++|||++|+...
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~----~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF----GAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEE----SCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEE----ecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 356899 999998888774 399999987654322210 0013 455678899999999886544
Q ss_pred C----CCeEEEEECCCCC-eeeeEecC-cceEEEEEeecCCEEEEEeC----CCeEEEEEccCCeE--EEEeecCCCCee
Q 004270 494 Y----HGDIKVWDFKGRD-LKSRWEVG-CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRM--VRKFEGHTDRIT 561 (764)
Q Consensus 494 ~----dg~v~iwd~~~~~-~~~~~~~~-~~i~~~~~s~~~~~la~~~~----d~~i~v~d~~~~~~--~~~~~~h~~~i~ 561 (764)
. +..|+++|+.++. ....+..+ ...... ++++++.|+..+. .+.|.++|+.++.. .+.+..|...+.
T Consensus 253 ~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 331 (693)
T 3iuj_A 253 ANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL 331 (693)
T ss_dssp ESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred ccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence 2 2489999998763 33444433 333343 7777777766554 36899999988754 345666766665
Q ss_pred EEEEcCCCcEEEEEeCCC---cEEEEEcCccceEEEEeeCC--ceEEEEEcCCCCeEEEEEeC----CCeEEEEecc
Q 004270 562 DFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHVD----QNGVYLWVNR 629 (764)
Q Consensus 562 ~l~~s~dg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~--~v~~l~~sp~g~~lat~~~d----~~~i~lW~~~ 629 (764)
.|++++++|+....++ .|++||+. +.....+..+. .+..+.+++++..|+....+ + .++.|++.
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~-~l~~~d~~ 404 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPP-TLYRFEPK 404 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC-EEEEECTT
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCC-EEEEEECC
Confidence 8999999888766543 68999987 44555555433 47788889999888777655 4 68888874
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.26 E-value=4.1e-09 Score=106.58 Aligned_cols=139 Identities=16% Similarity=0.147 Sum_probs=101.0
Q ss_pred EEEECCCCCEEEEEe-------------------CCCeEEEEECCCCCeeeeEecC---cceEEEEE--eecCCEEEEEe
Q 004270 479 GVACDSTNTLMISAG-------------------YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVY--HRVNGLLATVA 534 (764)
Q Consensus 479 ~l~~~~~~~~l~s~~-------------------~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~--s~~~~~la~~~ 534 (764)
.+.|+|+++.++++. .+.+|.+||+.+++.+.++... .....+.| +|+++++.+++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 456677777776664 3689999999999888888875 34455555 99999988887
Q ss_pred C------CCeEEEEEccCCeE--EEEe--ecC----------------CCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcC
Q 004270 535 D------DLVIRLFDVVALRM--VRKF--EGH----------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVI 587 (764)
Q Consensus 535 ~------d~~i~v~d~~~~~~--~~~~--~~h----------------~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~ 587 (764)
. +++|.+|..+.++. ...+ ... ......|.+|+||++|.++. ..+.|.++|+.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 4 56888777655432 1111 110 24578899999999988766 46899999986
Q ss_pred c---cceEEEEeeCC---------------ceEEEEEcCCCCeEEEEE
Q 004270 588 L---ARQIDAIHVDV---------------SITALSLSPNMDVLATAH 617 (764)
Q Consensus 588 ~---~~~~~~~~~~~---------------~v~~l~~sp~g~~lat~~ 617 (764)
. .+++..+.... ....++++|||++|.++.
T Consensus 352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 3 45666666541 268899999999999998
No 239
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.23 E-value=1.2e-08 Score=103.07 Aligned_cols=193 Identities=10% Similarity=0.001 Sum_probs=128.0
Q ss_pred cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
...+++|++. ..+++...++.|..||..+++.. .+. ....+.+++++|+++++++ +. ..|.+||..+++......
T Consensus 52 egp~~~~~~~-~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 52 EGPTFDPASG-TAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEETTTT-EEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEEC
T ss_pred cCCeEeCCCC-EEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-EC-CCEEEEECCCCcEEEEee
Confidence 3557888752 35556667889999999887654 333 2567999999999987665 44 459999998887543322
Q ss_pred cc---CCCCEEEEEEeeCCCCEEEEEeC------CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCC
Q 004270 221 HS---MRGAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADN 290 (764)
Q Consensus 221 ~~---~~~~v~~l~fs~d~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~ 290 (764)
.. ....+.+++++|+|+ ++++... .+.|..++ +++.... . .+......++|+|+++.++.+ +.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~-~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKL-F-ADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEE-E-EEESSEEEEEECTTSCEEEEEETTTC
T ss_pred CCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEe-e-CCCcccCCeEEcCCCCEEEEEECCCC
Confidence 11 123688999999998 5554432 24566666 4554332 2 244567899999999866544 5578
Q ss_pred cEEEEEecCCCC----CceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEe
Q 004270 291 SIKMWIFDTTDG----DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (764)
Q Consensus 291 ~i~vw~~~~~~~----~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~ 343 (764)
.|.+|+++...+ ..+....+......+..+++.++|++.++...++.|..|+.
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 899998762222 11223333334455678999999987777766778888876
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=5.4e-09 Score=116.05 Aligned_cols=335 Identities=10% Similarity=0.111 Sum_probs=194.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe-----------EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEe
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSI-----------SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i-----------~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (764)
..|++++.++.|.-+|..+|+.+.++....... ..+++ .+..|++++.|+.|..+|..+|+.+.++.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 579999999999999999999999986532210 11222 35678889999999999999999998887
Q ss_pred ccCC---CCEEEEEEeeCCCCEEEEEeC------CCcEEEEECCCceeeeeeeccc--c---------------------
Q 004270 221 HSMR---GAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQSVIREAH--D--------------------- 268 (764)
Q Consensus 221 ~~~~---~~v~~l~fs~d~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~h--~--------------------- 268 (764)
.... ..+.+--...++ .++++.. +|.|..+|.++|+.+..+.... .
T Consensus 145 ~~~~~~~~~~~~~P~v~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp CSCTTSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred cCCCCCcceecCCCEEECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 5311 111111011244 3444432 5899999999999887775210 0
Q ss_pred -------cCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEE
Q 004270 269 -------NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (764)
Q Consensus 269 -------~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~ 341 (764)
.....+++.|+...++.++.++.. |...... +. .+..+. -+.|..+
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~--w~~~~~~--------------~~-------~gd~l~----~~~v~Al 275 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSP--WNREVRS--------------PG-------GGDNLY----LSSILAI 275 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHS--------------TT-------CCCCTT----TTEEEEE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCc--cccCCCC--------------CC-------CCCcee----eeeEEEE
Confidence 011245777777777777665532 3211000 00 000000 0123333
Q ss_pred EeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCC
Q 004270 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (764)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (764)
|..+++..-.+..... .. |+.
T Consensus 276 D~~tG~~~W~~~~~~~-----------------------------~~----------------wd~-------------- 296 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPG-----------------------------DS----------------WDF-------------- 296 (668)
T ss_dssp CTTTCCEEEEEESSTT-----------------------------CC----------------SCC--------------
T ss_pred cCCCCceeeEeecCCC-----------------------------cc----------------ccc--------------
Confidence 3333222111100000 00 000
Q ss_pred CCCCCeEEEEEccCCC---EEEEEecCCcEEEEECcCCcccceecCcccc-----------------cc-c--------c
Q 004270 422 ENPTAVKACTISACGN---FAVLGTAGGWIERFNLQSGISRGSYLDMSER-----------------SN-Y--------A 472 (764)
Q Consensus 422 ~~~~~v~~~~~s~~g~---~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~-----------------~~-~--------~ 472 (764)
....+.....+..+|+ .+++++.+|.++++|..+|+.+......... .. . +
T Consensus 297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~ 376 (668)
T 1kv9_A 297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS 376 (668)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence 0001222222333554 6778888888888888888876332211000 00 0 0
Q ss_pred cc--CcEEEEEECCCCCEEEEE------------------------------------eCCCeEEEEECCCCCeeeeEec
Q 004270 473 HN--GEVVGVACDSTNTLMISA------------------------------------GYHGDIKVWDFKGRDLKSRWEV 514 (764)
Q Consensus 473 h~--~~v~~l~~~~~~~~l~s~------------------------------------~~dg~v~iwd~~~~~~~~~~~~ 514 (764)
.. ..-..++++|+..+++.. ..+|.|..||..+++.+.....
T Consensus 377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~ 456 (668)
T 1kv9_A 377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY 456 (668)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC
Confidence 00 001126777776665532 1348899999999999988887
Q ss_pred CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCe-eEEEEcCCCc-EEEEEe
Q 004270 515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WLLSSG 576 (764)
Q Consensus 515 ~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i-~~l~~s~dg~-~l~s~s 576 (764)
..+.....+...+.++++++.|+.++.||.++++.+..++...+.. .-+.+..+|+ |++.++
T Consensus 457 ~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 457 PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 7666666677789999999999999999999999999887653221 2345556777 444443
No 241
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.17 E-value=7.8e-08 Score=104.45 Aligned_cols=380 Identities=14% Similarity=0.124 Sum_probs=202.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe---------EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSI---------SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS 222 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i---------~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~ 222 (764)
..+++++.++.|.-+|.++|+.+.++......- ..+++ .+..|++++.++.|.-+|.++|+.+.+....
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 468888875559999999999999886543210 11222 3567888999999999999999999887653
Q ss_pred CCC---CEE-EEEEeeC---CCCEEEEEe------CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270 223 MRG---AVT-ALAFSSD---GQPLLASGA------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (764)
Q Consensus 223 ~~~---~v~-~l~fs~d---~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 289 (764)
... .+. +.....+ |+..+++++ .+|.|..+|.++|+.+.... . .. ..+.|++........+
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~-~--~~---~~~~p~~~~~~~~~g~ 220 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP-F--VE---GHMGRLNGKDSTVTGD 220 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE-S--ST---TCEEEETTEEEEESSC
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC-C--Cc---cccccccCcccccccc
Confidence 210 111 1112222 321455544 37899999999999887654 1 11 1122333333333323
Q ss_pred CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 369 (764)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (764)
.....|..+......+......+....-..+++.|+...++.+..+... |..... ....+
T Consensus 221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~--~~~~~r----~~~gg-------------- 280 (582)
T 1flg_A 221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGP--WNTWAR----TAKGG-------------- 280 (582)
T ss_dssp TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSS--SCGGGG----SCTTS--------------
T ss_pred cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCc--ccCccc----ccCCC--------------
Confidence 3333443220000001100011111222456788877777777654321 221000 00000
Q ss_pred hhccCceeEeeecccccccc-cceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEc-cCCC---EEEEEec
Q 004270 370 ELKLKPVIAFDCAEIRERDW-CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACGN---FAVLGTA 444 (764)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~---~l~~g~~ 444 (764)
.+.. + ...+ ..+++.....+.+ +|..+........ ......++ -+... .+|+ .++.++.
T Consensus 281 ----~~~~-~------d~~~~~~v~AlD~~TG~~-~W~~q~~~~d~wd---~~~~~~p~-l~~~~~~~G~~~~~v~~~~~ 344 (582)
T 1flg_A 281 ----NPHD-Y------DSLYTSGQVGVDPSSGEV-KWFYQHTPNDAWD---FSGNNELV-LFDYKAKDGKIVKATAHADR 344 (582)
T ss_dssp ----CSTT-C------CCTTCSEEEEECTTTCCE-EEEEESSTTCCSC---CCCCCCCE-EEEEECSSSCEEEEEEEECT
T ss_pred ----cccc-c------CCcccceEEEEeCCCCCE-EEEEeCCCCCccc---ccCCCCcE-EEeeecCCCCEEEEEEEECC
Confidence 0000 0 0000 0111111111211 1332211000000 00001122 12222 4674 7888999
Q ss_pred CCcEEEEECcCCcccceecCccccc-----------------cc---------cccC-----------cEEEEEECCCCC
Q 004270 445 GGWIERFNLQSGISRGSYLDMSERS-----------------NY---------AHNG-----------EVVGVACDSTNT 487 (764)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~-----------------~~---------~h~~-----------~v~~l~~~~~~~ 487 (764)
+|.++++|..+|+.+..+....... .. .... .-..++++|+..
T Consensus 345 ~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 424 (582)
T 1flg_A 345 NGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG 424 (582)
T ss_dssp TSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC
T ss_pred CceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC
Confidence 9999999999998876554221000 00 0000 011456777665
Q ss_pred EEEEEe---------------------------------CCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe
Q 004270 488 LMISAG---------------------------------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA 534 (764)
Q Consensus 488 ~l~s~~---------------------------------~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 534 (764)
+++... .+|.|..||+.+++.+.+.....+...-.....+.++++++
T Consensus 425 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~ 504 (582)
T 1flg_A 425 LFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT 504 (582)
T ss_dssp CEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC
T ss_pred EEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC
Confidence 555432 26889999999999988887765554444445688899999
Q ss_pred CCCeEEEEEccCCeEEEEeecCCCCe-eEEEEcCCCc-EEEEE
Q 004270 535 DDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WLLSS 575 (764)
Q Consensus 535 ~d~~i~v~d~~~~~~~~~~~~h~~~i-~~l~~s~dg~-~l~s~ 575 (764)
.|+.++.||.++++.+.+++...+.+ .-+.+..+|+ |+++.
T Consensus 505 ~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 505 GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 99999999999999999988654322 2367778887 44443
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.17 E-value=9.5e-09 Score=97.80 Aligned_cols=195 Identities=7% Similarity=-0.045 Sum_probs=145.6
Q ss_pred CCeEEEEEccCCCEEEEEec---CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 004270 425 TAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 501 (764)
.....+++++++ .|++++. ++.|.++|+.+++....+.. +......+++++. ++..++.-.++.+.++
T Consensus 21 ~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------~~~~fgeGi~~~g-~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 21 AFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-------DDSYFGEGLTLLN-EKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-------CTTCCEEEEEEET-TEEEEEETTCSEEEEE
T ss_pred CCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-------CCCcceEEEEEeC-CEEEEEEecCCEEEEE
Confidence 346889999986 5555442 57999999999998887642 2222334566652 3444555578999999
Q ss_pred ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC-----CCeeEEEEcCCCcEEEEEe
Q 004270 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~-----~~i~~l~~s~dg~~l~s~s 576 (764)
|..+.+.+.++... .-....+++|++.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|+..+...
T Consensus 92 D~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp ETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 99999999998765 22335577789888888888999999999999888876321 246788888 787666666
Q ss_pred CCCcEEEEEcCccceEEEEeeC--------------CceEEEEEcCCCCeEEEEEeCCCeEEEEeccc
Q 004270 577 MDGSLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 577 ~dg~i~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~ 630 (764)
.++.|.+-|..+++.+..+... .....++|+|+++.|.+++.....++.-++..
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 7889999999999999999763 23689999999988888877655677776654
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.16 E-value=3.7e-13 Score=138.51 Aligned_cols=260 Identities=8% Similarity=-0.025 Sum_probs=142.1
Q ss_pred CCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe
Q 004270 192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271 (764)
Q Consensus 192 ~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v 271 (764)
++..|++++.||.|..||..+|+.+.++.. +.+.+..+..++. ++++++.||.|+.||.++++.+..........+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 567899999999999999999999988875 3455555666776 677778999999999999987665541111111
Q ss_pred e-EEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccc
Q 004270 272 I-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (764)
Q Consensus 272 ~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~ 350 (764)
. +..+. ++..+++++.|+.+..||..++.. +.....+. ...++|++..+++++.|+.++.||..+++...
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcE----EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 1 11111 344677888899999998776633 22222222 23456678889999999999999988775443
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
.+... . ....
T Consensus 155 ~~~~~-------------------------------------------------------~---------------~~~~ 164 (369)
T 2hz6_A 155 NATYF-------------------------------------------------------D---------------YAAS 164 (369)
T ss_dssp EEEEE-------------------------------------------------------E---------------ECCB
T ss_pred eEecc-------------------------------------------------------c---------------ccCc
Confidence 32110 0 0001
Q ss_pred EEccC---CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE-EEEECCCCCEEEE--EeCCCeEEEEECC
Q 004270 431 TISAC---GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVACDSTNTLMIS--AGYHGDIKVWDFK 504 (764)
Q Consensus 431 ~~s~~---g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s--~~~dg~v~iwd~~ 504 (764)
+++.+ ...+++++.+|.+..||..+|+.+..+. ...++. ...+++++...+. ...++.++.+|..
T Consensus 165 ~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~---------~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~ 235 (369)
T 2hz6_A 165 LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN---------YASPVVAFYVWQREGLRKVMHINVAVETLRYLTFM 235 (369)
T ss_dssp CCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE---------CSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHH
T ss_pred cccCCccccceEEEECCCCEEEEEECCCCcEEEEec---------CCCceEEEEEecCCceEeccceeecccceeeeehh
Confidence 11121 1457778899999999999998876653 223333 3455566643211 0114456666666
Q ss_pred CCC----eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc
Q 004270 505 GRD----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (764)
Q Consensus 505 ~~~----~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~ 545 (764)
+++ .+..+.....+.. ..-.+..+++++.+|.++.++..
T Consensus 236 tG~~~~~~~W~~~~~~~~~s--p~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 236 SGEVGRITKWKYPFPKETEA--KSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHTSCCCCCCHHHH--HHHSEEEECBEECSSCEECCEEE
T ss_pred cCCcccceeeeeccCccccc--cccccceEEEecccCCEEecCcc
Confidence 665 4444443332210 00134577788888888887764
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=124.79 Aligned_cols=167 Identities=8% Similarity=-0.078 Sum_probs=93.6
Q ss_pred ccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEE-EEEECCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 004270 433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511 (764)
Q Consensus 433 s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 511 (764)
..++..+++++.+|.|+.||..+|+.+..+... ....+. +..+. .+..+++++.|+.|+.||..+|+.+..
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-------~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~ 117 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-------IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT 117 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCC-------HHHHHTTCSCC------CCCCEEEEEEEEECCC-------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-------CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 356777777889999999999998876554310 000010 00111 345677888899999999999998887
Q ss_pred EecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCC---cEEEEEeCCCcEEEEEcCc
Q 004270 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG---KWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 512 ~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg---~~l~s~s~dg~i~iwd~~~ 588 (764)
+..+.. ..++|++..+++++.|+.|+.||..+++.+..+..+. ....+++++. ..+++++.||.|+.||..+
T Consensus 118 ~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 118 LSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp ------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred ecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 766542 3456788999999999999999999998766654321 2233444432 4566788899999999999
Q ss_pred cceEEEEeeCCceE-EEEEcCCCCe
Q 004270 589 ARQIDAIHVDVSIT-ALSLSPNMDV 612 (764)
Q Consensus 589 ~~~~~~~~~~~~v~-~l~~sp~g~~ 612 (764)
|+.+..+....++. ...++++|..
T Consensus 193 G~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 193 GDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp CCEEEEEECSSCEEEEEECTTSSCE
T ss_pred CcEEEEecCCCceEEEEEecCCceE
Confidence 99999888777754 4566677753
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.10 E-value=1e-07 Score=103.55 Aligned_cols=375 Identities=11% Similarity=0.027 Sum_probs=207.3
Q ss_pred CEEEEEeC-CCcEEEEeC-CCCeEEEEEcCCCCC-e----------EEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEE
Q 004270 152 NKVIVGSQ-EGSLQLWNI-STKKKLYEFKGWGSS-I----------SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (764)
Q Consensus 152 ~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~h~~~-i----------~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~ 218 (764)
..+++++. ++.|.-+|. .+|+.+.++...... + ..++. ++..|++++.|+.+..+|..+|+.+.+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 47888888 899999999 999999988643210 0 11222 356788888999999999999999988
Q ss_pred EeccCC---CCEEEEEEeeCCCCEEEEEeC------CCcEEEEECCCceeeeeeeccccc--------------------
Q 004270 219 FTHSMR---GAVTALAFSSDGQPLLASGAS------SGVISIWNLEKRRLQSVIREAHDN-------------------- 269 (764)
Q Consensus 219 ~~~~~~---~~v~~l~fs~d~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~h~~-------------------- 269 (764)
...... ..+.+--...++ .+++++. +|.|..+|.++|+.+..+......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred ecCCCCCccceeccCCEEECC--EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 764310 012111111244 4555554 789999999999988776521110
Q ss_pred -----------------CeeEEEEecCCCEEEEEcCC----------------CcEEEEEecCCCCCceeeEeccCCC--
Q 004270 270 -----------------AIISLHFFANEPVLMSASAD----------------NSIKMWIFDTTDGDPRLLRFRSGHS-- 314 (764)
Q Consensus 270 -----------------~v~~l~~~~~~~~l~s~~~d----------------~~i~vw~~~~~~~~~~~~~~~~~h~-- 314 (764)
....+++.++...++.+..+ +.|..+|.++.. ..-......|.
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~--~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM--AKWGYQKTPHDEW 296 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC--EEEEEESSTTCSS
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc--EEEEecCCCCccc
Confidence 00235666666666666532 246666665542 22222222221
Q ss_pred -----CCCeeEEEecCCC---EEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeeccccc
Q 004270 315 -----APPLCIRFYANGR---HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (764)
Q Consensus 315 -----~~v~~i~~~~~~~---~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (764)
..+.-+....+|+ .++.++.+|.+.++|..+++............-...+. ...-.|+..-....
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d----~~~g~p~~~~~~~~--- 369 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVD----LKTGTPVRDPEFAT--- 369 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC----TTTCSEEECGGGCC---
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccccc----ccCCceecccccCC---
Confidence 1222222234674 56778889999999988876654432110000000000 00000000000000
Q ss_pred ccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCcc
Q 004270 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466 (764)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~ 466 (764)
.. ........+.......-..++++|+...+++...+....++.....-...
T Consensus 370 ---------------------~~-~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g------ 421 (571)
T 2ad6_A 370 ---------------------RM-DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG------ 421 (571)
T ss_dssp ---------------------CT-TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT------
T ss_pred ---------------------CC-CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccC------
Confidence 00 00000000000000111457889999999998877655555433210000
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
...-+.-..+..+|.+. + ...+|.|..||..+++.+.++....++....+...+.++++++.|+.++.+|.++
T Consensus 422 ----~~~~g~~~~~~~~~~~~-~--~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 422 ----QFFVGATLAMYPGPNGP-T--KKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp ----SCCCCEEEEEEECTTST-T--SCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred ----CccccccceeccCcccc-C--CCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 00111111223333321 0 0246899999999999998887765555555556678888899999999999999
Q ss_pred CeEEEEeecCCCC-eeEEEEcCCCcEEEE
Q 004270 547 LRMVRKFEGHTDR-ITDFCFSEDGKWLLS 574 (764)
Q Consensus 547 ~~~~~~~~~h~~~-i~~l~~s~dg~~l~s 574 (764)
++.+.++...... -..+.+..+|+.++.
T Consensus 495 G~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 495 GKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 9999988744321 123445678875543
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.10 E-value=3.6e-08 Score=99.75 Aligned_cols=228 Identities=11% Similarity=0.081 Sum_probs=151.6
Q ss_pred eCCEEEEEe-cCCcEEEEEccCCcccccceeeEe-------cCCccccEEEEeCCCCCCEEEEEeCC------CcEEEEe
Q 004270 102 FGEHILSID-IDGNMFIWAFKGIEENLAPVGHVK-------LDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWN 167 (764)
Q Consensus 102 ~g~~l~s~~-~dg~v~vWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~l~~~~~d------g~i~iwd 167 (764)
++++|+..+ .++.|.|.|+.+........++++ ......-.+.+.|++ .++++..+ |.|.++|
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEETTSCSCCEEEEEC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCCcCCCCCCeEEEEE
Confidence 466666544 477899999976633333345552 111233455678888 44454444 6899999
Q ss_pred CCCCeEEEEEcCCCCC---eEEEEEcCCCCEEEEEE-------------------cCCeEEEEEccCCceEEEEeccC-C
Q 004270 168 ISTKKKLYEFKGWGSS---ISSCVSSPALDVVAVGC-------------------SDGKIHVHNVRYDEELVTFTHSM-R 224 (764)
Q Consensus 168 ~~~~~~~~~~~~h~~~---i~~~~~sp~~~~la~g~-------------------~dg~i~iwd~~~~~~~~~~~~~~-~ 224 (764)
.++++.+.++.....+ -..+.|+|+++.+++.. ...+|.+||+.+++.+.++..+. .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999998632222 23478899999888874 36899999999998888887642 2
Q ss_pred CCEEEEEE--eeCCCCEEEEEe-----CCCcEEEEECCCcee--eeee--ecc---------------cccCeeEEEEec
Q 004270 225 GAVTALAF--SSDGQPLLASGA-----SSGVISIWNLEKRRL--QSVI--REA---------------HDNAIISLHFFA 278 (764)
Q Consensus 225 ~~v~~l~f--s~d~~~~l~sg~-----~dg~i~iwd~~~~~~--~~~~--~~~---------------h~~~v~~l~~~~ 278 (764)
.....+.| +|++++..+++- .+++|.+|..+.++. ...+ ... -......+.+++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 34556655 999994444554 677888876654421 1111 100 024578899999
Q ss_pred CCCEEEEEcC-CCcEEEEEecCCCCCceeeEeccCC--------------CCCCeeEEEecCCCEEEEEe
Q 004270 279 NEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGH--------------SAPPLCIRFYANGRHILSAG 333 (764)
Q Consensus 279 ~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h--------------~~~v~~i~~~~~~~~l~s~~ 333 (764)
|+++|.++.. .+.|.++++... ...+++....-. ......++++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9998877665 689999998633 233444333221 12478999999999999887
No 247
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.07 E-value=4.3e-05 Score=83.43 Aligned_cols=510 Identities=13% Similarity=-0.003 Sum_probs=253.5
Q ss_pred EEECCeEEEEecCce---EEEecccccceEEEEEe--CCEEEEEec-CCcEEEEEccCCcccccceeeEecCCccccEEE
Q 004270 71 AAYGNHIAVVKRAHQ---VATWSRHSAKVNLLLLF--GEHILSIDI-DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI 144 (764)
Q Consensus 71 ~a~g~~i~vw~~~~~---~~~~~~h~~~v~~l~~~--g~~l~s~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (764)
.+...+|++.+.... ...+...-.....++++ ++.|+-++. .+.|..+++++.... ...+...-.....++
T Consensus 14 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---~~v~~~~~~~P~GlA 90 (619)
T 3s94_A 14 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---QNVVVSGLLSPDGLA 90 (619)
T ss_dssp EECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C---EEEECSSCSCEEEEE
T ss_pred EeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---EEEEeCCCCCcCeEE
Confidence 344555666655322 11122233345556553 455555544 355777777654220 111111223456778
Q ss_pred EeCCCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc--CCeEEEEEccCCceEEEEec
Q 004270 145 MHPDTYLNKVIVG-SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS--DGKIHVHNVRYDEELVTFTH 221 (764)
Q Consensus 145 ~~p~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~--dg~i~iwd~~~~~~~~~~~~ 221 (764)
+.+.+ +.|+.+ ...+.|.+.+.........+...-.....+++.|.+.+|..... .+.|...++. |.....+..
T Consensus 91 vD~~~--~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~ 167 (619)
T 3s94_A 91 CDWLG--EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIIN 167 (619)
T ss_dssp EETTT--TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEEC
T ss_pred EEecC--CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEe
Confidence 88866 455555 45678999998654433333344456778999998666766653 3667777765 444444433
Q ss_pred cCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCC
Q 004270 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 301 (764)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~ 301 (764)
..-.....|++++++..+.++-...+.|...|+.......... +......++++..+ ...++-...+.|...+..++.
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 2245789999999766355555667889999987654333322 22233456677655 344444456677777654432
Q ss_pred CCceeeEeccCCCCCCeeEEEe-cCCCEEE--EEeC----CCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 302 GDPRLLRFRSGHSAPPLCIRFY-ANGRHIL--SAGQ----DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~--s~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
. ...+......+..+++. +..+--. -+.. =..+.+-..........-..+ .......
T Consensus 246 ~----~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g--------~~l~~d~---- 309 (619)
T 3s94_A 246 G----LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG--------VKLLENG---- 309 (619)
T ss_dssp C----CEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTT--------CCBCTTS----
T ss_pred c----cEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCch--------heecccC----
Confidence 1 12222222233444432 1100000 0000 001111110000000000000 0000000
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEEC
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNL 453 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~ 453 (764)
..+.. ..-..++.. ....++..++.........+ ....-..+.++++++.++.++... ..+.|+.+++
T Consensus 310 -~~C~~------~~~~~Ll~~--~~~~i~~i~l~~~~~~~~~~--~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~ 378 (619)
T 3s94_A 310 -KTCKD------GATELLLLA--RRTDLRRISLDTPDFTDIVL--QLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFI 378 (619)
T ss_dssp -SCBCS------SCSEEEEEE--ESSCEEEEESSSTTCCCEEC--CCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred -cccCC------CCceEEEEE--cccceEEEecCCCccceeEE--eccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEc
Confidence 00000 000112222 12344444544332211111 111235678899998766666554 5778999998
Q ss_pred cCCcccceecCccccccccccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEE
Q 004270 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLA 531 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la 531 (764)
.......... ..-....+++++..++ +.++-+..+.|.+.++............ .....+++.|....|.
T Consensus 379 ~g~~~~~v~~--------~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly 450 (619)
T 3s94_A 379 DGSGSQFVVT--------AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY 450 (619)
T ss_dssp TSCSCEEEEC--------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred CCCccEEEEE--------CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence 7643322221 2234567899997554 5555556789999998865433333222 6788999999766666
Q ss_pred EEeC--CCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCccceEEEEee-C-CceEEEEE
Q 004270 532 TVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHV-D-VSITALSL 606 (764)
Q Consensus 532 ~~~~--d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~-~~v~~l~~ 606 (764)
.... .+.|...+++...........-...+.|+++++++.|..+. ..+.|...++.. .....+.. . ....+++.
T Consensus 451 ~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG-~~~~~~~~~~l~~P~glav 529 (619)
T 3s94_A 451 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG-TGRRVLVEDKIPHIFGFTL 529 (619)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEEECCCCSSCCEEE
T ss_pred EecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC-CceEEEeccCCCCcEEEEE
Confidence 6543 36777777764433222333445678999998776666654 457788888753 33333321 1 12345555
Q ss_pred cCCCCeEEEEEeCCCeEEEE
Q 004270 607 SPNMDVLATAHVDQNGVYLW 626 (764)
Q Consensus 607 sp~g~~lat~~~d~~~i~lW 626 (764)
. +.+|..+......|+.-
T Consensus 530 ~--~~~ly~tD~~~~~I~~~ 547 (619)
T 3s94_A 530 L--GDYVYWTDWQRRSIERV 547 (619)
T ss_dssp E--TTEEEEECTTSSCEEEE
T ss_pred E--CCEEEEeecCCCeEEEE
Confidence 3 33666655444334433
No 248
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.07 E-value=4.7e-05 Score=83.12 Aligned_cols=471 Identities=10% Similarity=-0.016 Sum_probs=251.1
Q ss_pred EEEEEeCCeEEEEecCCCe--EEEecCCCCcceEEEEEeCC--eEEEEE--CCeEEEEecCce---EEEecccccceEEE
Q 004270 29 FVTVSVGKAFHIYNCAKLN--LVLVGPQLPKKIRALASYRD--YTFAAY--GNHIAVVKRAHQ---VATWSRHSAKVNLL 99 (764)
Q Consensus 29 ~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~I~~~~~~~~--~~~~a~--g~~i~vw~~~~~---~~~~~~h~~~v~~l 99 (764)
++.....+.|+..|+.... ...... .-+...+|++++. .+|.+- .+.|..++.... ...+...-.....+
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CEEEECSSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 4445567889999988653 222222 2445789999974 455554 344888876432 22233333467788
Q ss_pred EEe--CCEEEEEec-CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC--CCcEEEEeCCCCeEE
Q 004270 100 LLF--GEHILSIDI-DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ--EGSLQLWNISTKKKL 174 (764)
Q Consensus 100 ~~~--g~~l~s~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~--dg~i~iwd~~~~~~~ 174 (764)
++| +..|+.++. .+.|.+.++++.... ..+...-.....+++.|.+ ..|+.... .+.|...++......
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~----~l~~~~l~~P~~Iavdp~~--g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRK----VLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCE----EEECSSCSCCCCEEEETTT--TEEEEEECSSSCEEEEEETTSCSCE
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCEE----EEEeCCCCCCceEEEecCC--CeEEEeccCCCCEEEEEECCCCceE
Confidence 875 566666654 577999998765431 1111233445677888876 56776653 356666676533333
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004270 175 YEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (764)
Q Consensus 175 ~~~~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd 253 (764)
......-.....+++++++..|..+.. .+.|...|+.... ...+..........+++..+ . +.++-...+.|...|
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gi~~~~~-~-ly~td~~~~~V~~~d 240 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFED-I-LYWTDWSTHSILACN 240 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC---------CCCEEESSS-E-EEEECTTTCSEEEEE
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEEeCCCCCceEEEEeCC-E-EEEecCCCCEEEEEE
Confidence 333333456789999998777776654 4778888886433 22222211222346676554 3 566656778899999
Q ss_pred CCCceeeeeeecc----------cc--------------cCeeEEEEe-----------cCC---------------CEE
Q 004270 254 LEKRRLQSVIREA----------HD--------------NAIISLHFF-----------ANE---------------PVL 283 (764)
Q Consensus 254 ~~~~~~~~~~~~~----------h~--------------~~v~~l~~~-----------~~~---------------~~l 283 (764)
..+++....+... |. +....+++. |.| .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 8777543332210 10 011112221 111 122
Q ss_pred EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHh
Q 004270 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (764)
+.+. .+.|+..+++...... +......-..+..++|.+.+..|+.+. ..+.|..+++.......
T Consensus 321 l~~~-~~~i~~i~l~~~~~~~--~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~------------ 385 (619)
T 3s94_A 321 LLAR-RTDLRRISLDTPDFTD--IVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQF------------ 385 (619)
T ss_dssp EEEE-SSCEEEEESSSTTCCC--EECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------------
T ss_pred EEEc-ccceEEEecCCCccce--eEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEE------------
Confidence 2222 2345555554432211 111111223456778887444444443 45556555543211000
Q ss_pred hccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEE-EE
Q 004270 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VL 441 (764)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~ 441 (764)
... .....+..+++...++.| ++
T Consensus 386 -----------------------------------------------------v~~---~~~~~p~GlAvD~~~~~lY~t 409 (619)
T 3s94_A 386 -----------------------------------------------------VVT---AQIAHPDGIAVDWVARNLYWT 409 (619)
T ss_dssp -----------------------------------------------------EEC---SSCSCCCEEEEETTTTEEEEE
T ss_pred -----------------------------------------------------EEE---CCCCCcCceEEecccCcEEEE
Confidence 000 011345678888755544 44
Q ss_pred EecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC--CCeEEEEECCCCCeeeeEecC-cce
Q 004270 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY--HGDIKVWDFKGRDLKSRWEVG-CSL 518 (764)
Q Consensus 442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~-~~i 518 (764)
-+..+.|.+.++..... ..+. ...-....+|+++|....|..+.. .+.|...+++........... ...
T Consensus 410 D~~~~~I~v~~~~G~~~-~~l~-------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P 481 (619)
T 3s94_A 410 DTGTDRIEVTRLNGTMR-KILI-------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWP 481 (619)
T ss_dssp ETTTTEEEEEETTSCSC-EEEE-------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred eCCCCcEEEEeCCCCeE-EEEE-------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCC
Confidence 45567899999875533 2322 123456789999997545544432 367777777654433333322 567
Q ss_pred EEEEEeecCCEEEEEe-CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEE-eCCCcEEEEEcCccc
Q 004270 519 VKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILAR 590 (764)
Q Consensus 519 ~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~-s~dg~i~iwd~~~~~ 590 (764)
..+++.++++.|..+. ..+.|..+++........+.+.-.....|+...+ +|..+ ...+.|..-|..+|.
T Consensus 482 ~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 482 NGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred eeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 8999998777776665 4578999998654332222332233445666533 44444 345667777777763
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.05 E-value=1.2e-07 Score=103.10 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=111.6
Q ss_pred CcEEEEECcCCcccceecCccccc--cccccCcEEEEEEC-CCCC---EEEEEeCCCeEEEEECCCCCeeeeEecCcce-
Q 004270 446 GWIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACD-STNT---LMISAGYHGDIKVWDFKGRDLKSRWEVGCSL- 518 (764)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~-~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i- 518 (764)
+.|..+|..+|+.+-.+....... .......+. +... .+|+ .++.++.+|.++++|..+++.+........+
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 578999999999887765211000 000112222 2222 4664 7888999999999999999988766543200
Q ss_pred ---------------------------------------------EEEEEeecCCEEEEEe-------------------
Q 004270 519 ---------------------------------------------VKIVYHRVNGLLATVA------------------- 534 (764)
Q Consensus 519 ---------------------------------------------~~~~~s~~~~~la~~~------------------- 534 (764)
..++++|+..++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 1345666655555433
Q ss_pred --------------CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCCc
Q 004270 535 --------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600 (764)
Q Consensus 535 --------------~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 600 (764)
.+|.|.-||+.+++.+-+...+. ++..-.....+..++.++.|+.++.||..+|+.+..++....
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 25789999999999887776432 222212222456788899999999999999999999998776
Q ss_pred eEE--EEEcCCCCe-EEEEE
Q 004270 601 ITA--LSLSPNMDV-LATAH 617 (764)
Q Consensus 601 v~~--l~~sp~g~~-lat~~ 617 (764)
+.+ +.+..+|+. +++.+
T Consensus 529 ~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 529 IVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp CCSCCEEEEETTEEEEEEEE
T ss_pred cccCceEEEECCEEEEEEEc
Confidence 443 677778874 44443
No 250
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.03 E-value=0.00013 Score=85.23 Aligned_cols=557 Identities=8% Similarity=0.042 Sum_probs=282.8
Q ss_pred CeEEEEEEeCCeEEEEecC--CCeEEEecCCCCcceEEEEEe--CCeEEE-EECCeEEEEecC--ceEEEecc-cccceE
Q 004270 26 TENFVTVSVGKAFHIYNCA--KLNLVLVGPQLPKKIRALASY--RDYTFA-AYGNHIAVVKRA--HQVATWSR-HSAKVN 97 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~--~~~~~~~~~~~~~~I~~~~~~--~~~~~~-a~g~~i~vw~~~--~~~~~~~~-h~~~v~ 97 (764)
+.+++.+-.+.| .|+.+. +.+.+ ...+.......++.. +++.++ .+...|++.+.. ..+..+.. ....|.
T Consensus 440 ~~yLvlS~~~~T-~Vl~i~~e~veev-~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~ 517 (1158)
T 3ei3_A 440 DDTLVLSFVGQT-RVLMLNGEEVEET-ELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNIS 517 (1158)
T ss_dssp CCEEEEEETTEE-EEEEEETTEEEEE-CCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCC
T ss_pred CCEEEEECCCCe-EEEEEeCCccccc-ccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEE
Confidence 446666555555 344432 22222 122332222233222 333333 456668888763 35666654 345788
Q ss_pred EEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCC----CCCEEEEEeC-CCcEEEEeCCCCe
Q 004270 98 LLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDT----YLNKVIVGSQ-EGSLQLWNISTKK 172 (764)
Q Consensus 98 ~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~l~~~~~-dg~i~iwd~~~~~ 172 (764)
..+.++.+++.++ .+.+.+++++.+++.. +....... .+.++.+.|.. ..+.+++|.. |++++|+++.+.+
T Consensus 518 ~As~n~~~vvva~-g~~l~~fel~~~~L~~--~~~~~l~~-evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 518 VASCNSSQVVVAV-GRALYYLQIHPQELRQ--ISHTEMEH-EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp EEEECSSEEEEEE-TTEEEEEEEETTEEEE--EEEEECSS-CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred EEEeCCCEEEEEE-CCEEEEEEeeCCceee--ecccCCCC-ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 8888888888875 6788888888654321 23333332 34444455432 1268999996 9999999999887
Q ss_pred EEEEEcCC-CCCeEEEEEc--CCCCEEEEEEcCCeEEEEEcc--CCceEEE--EeccCCCCEEEEEEeeCCCCEEEEEeC
Q 004270 173 KLYEFKGW-GSSISSCVSS--PALDVVAVGCSDGKIHVHNVR--YDEELVT--FTHSMRGAVTALAFSSDGQPLLASGAS 245 (764)
Q Consensus 173 ~~~~~~~h-~~~i~~~~~s--p~~~~la~g~~dg~i~iwd~~--~~~~~~~--~~~~~~~~v~~l~fs~d~~~~l~sg~~ 245 (764)
.+....-. .....++.+. ....+|.+|..||.+.-+.+. +|+.... ...+ ..++.-..|...|..-+++.+
T Consensus 594 ~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s- 671 (1158)
T 3ei3_A 594 LLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS- 671 (1158)
T ss_dssp EEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-
T ss_pred eEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-
Confidence 77554321 1233444332 234688999999998766654 4443322 2223 345555555544442333333
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeE-EEEecC--CCEEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIIS-LHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~-l~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (764)
+.-..++.-+ ++....- -....+.. ..|+.. ..-++..+ ++.+++..++.... ...+.. .-...+..+++
T Consensus 672 ~rp~liy~~~-~~l~~s~--l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~--~~~~~i-pL~~Tprri~y 744 (1158)
T 3ei3_A 672 DRPTVIYSSN-HKLVFSN--VNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK--LHIRTV-PLYESPRKICY 744 (1158)
T ss_dssp SSCEEEEESS-SSEEEEE--BSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS--EEEEEE-ECSSEEEEEEE
T ss_pred CCCEEEEEcC-CceEEec--cChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC--eeEEEE-eCCCCceEEEE
Confidence 3444444432 3322221 12223333 334332 12344444 46699998865421 222222 23467899999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (764)
Q Consensus 323 ~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
+|+.+.++.+..+. ..++.... ...+ .. ........ ............ ....... +-.......+
T Consensus 745 ~~~~~~~~v~~~~~--~~~~~~~~-~~~~-~~-~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~----~g~~~~~s~i 809 (1158)
T 3ei3_A 745 QEVSQCFGVLSSRI--EVQDTSGG-TTAL-RP-SASTQALS-SSVSSSKLFSSS-----TAPHETS----FGEEVEVHNL 809 (1158)
T ss_dssp EGGGTEEEEEEEEE--EEECSSSS-EEES-SC-CHHHHCSE-EEECCCCCC-------------------CCCEEEEEEE
T ss_pred cCCCCEEEEEEEec--cccccccc-cchh-hh-hhhhhhhh-hccccccccccc-----ccCchhh----cCCceeeEEE
Confidence 99887766655332 11221100 0000 00 00000000 000000000000 0000000 0000012344
Q ss_pred EEEEccceeecceeecCCCCCCCCeEEEE---Ecc-CCCEEEEEe----------cCCcEEEEECcCCcccceecCcccc
Q 004270 403 YVWRLQNFVLGEHILRPCPENPTAVKACT---ISA-CGNFAVLGT----------AGGWIERFNLQSGISRGSYLDMSER 468 (764)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~-~g~~l~~g~----------~~g~i~i~~~~~~~~~~~~~~~~~~ 468 (764)
++.|..+...- ..+.. .....+.+++ +.. ...++++|+ ..|.|.+|++..++......
T Consensus 810 ~lidp~t~~~i-~~~~l--~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~----- 881 (1158)
T 3ei3_A 810 LIIDQHTFEVL-HAHQF--LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE----- 881 (1158)
T ss_dssp EEEETTTCCEE-EEEEC--CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-----
T ss_pred EEEeCCCCeEE-EEEeC--CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-----
Confidence 45554433221 11111 0112333333 332 247899987 35899999997443332222
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeee-eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEc--c
Q 004270 469 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV--V 545 (764)
Q Consensus 469 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~--~ 545 (764)
....+.|++++-- +|+ |+++- ..+|++|++...+.+. .......+..+.....++++++|..-..|.++.. .
T Consensus 882 --~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~ 956 (1158)
T 3ei3_A 882 --KEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM 956 (1158)
T ss_dssp --EEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred --EEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence 2456788888754 344 44333 4789999998766444 1222223444455556889999988777777544 4
Q ss_pred CCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc--------cce--EEEEeeCCceEEEE---EcCCC-
Q 004270 546 ALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL--------ARQ--IDAIHVDVSITALS---LSPNM- 610 (764)
Q Consensus 546 ~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~--------~~~--~~~~~~~~~v~~l~---~sp~g- 610 (764)
..++...-+ -+...++++.|-.++ .++.+..+|.+.+...+. .++ ...|.....|+++. +.+.+
T Consensus 957 ~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~ 1035 (1158)
T 3ei3_A 957 EGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNL 1035 (1158)
T ss_dssp TTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC--
T ss_pred CCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCC
Confidence 444433222 245678888887665 566689999999997654 122 23455566688876 33332
Q ss_pred --------CeEEEEEeCCCeEEEEe
Q 004270 611 --------DVLATAHVDQNGVYLWV 627 (764)
Q Consensus 611 --------~~lat~~~d~~~i~lW~ 627 (764)
..++.++.+| +|.+.-
T Consensus 1036 ~~~~~~~~~~il~~T~~G-sIg~l~ 1059 (1158)
T 3ei3_A 1036 GETSTPTQGSVLFGTVNG-MIGLVT 1059 (1158)
T ss_dssp -----CEEEEEEEEETTS-CEEEEE
T ss_pred ccccccccceEEEEecCC-EEEEEE
Confidence 3466677777 466543
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.01 E-value=3.8e-08 Score=106.80 Aligned_cols=341 Identities=11% Similarity=0.038 Sum_probs=187.2
Q ss_pred EEEEEeC-CCcEEEEEC-CCceeeeeeecccccC----------eeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCcee
Q 004270 239 LLASGAS-SGVISIWNL-EKRRLQSVIREAHDNA----------IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (764)
Q Consensus 239 ~l~sg~~-dg~i~iwd~-~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 306 (764)
.++.++. ++.|.-+|. .+|+.+.......... -..+.. .+..++.++.|+.+..+|..++...++
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~- 140 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE- 140 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE-
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE-
Confidence 4666666 789999999 8998887765221110 012233 345778888899888887766532211
Q ss_pred eEeccCCC--CCCeeEEEecCCCEEEEEeC------CCcEEEEEeecccccccccchhhhHHHh-hccchhhhhccCcee
Q 004270 307 LRFRSGHS--APPLCIRFYANGRHILSAGQ------DRAFRLFSVIQDQQSRELSQRHVAKRAR-KLKMKEEELKLKPVI 377 (764)
Q Consensus 307 ~~~~~~h~--~~v~~i~~~~~~~~l~s~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 377 (764)
.....+. ..+.+--...++ .++.++. ++.|..+|..+++..-.+.......... ....... .++.
T Consensus 141 -~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~----~~~~ 214 (571)
T 2ad6_A 141 -VEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA----NPHY 214 (571)
T ss_dssp -EECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT----CGGG
T ss_pred -ecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccc----cccc
Confidence 1111111 112111011144 4555544 7899999998887765543321110000 0000000 0000
Q ss_pred EeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC------------
Q 004270 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG------------ 445 (764)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~------------ 445 (764)
.- .......|..-. ... .....-..+++.+....+++++.+
T Consensus 215 G~--~~~g~~~w~~~~-----------------------~~~--gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 215 GQ--FGLGTKTWEGDA-----------------------WKI--GGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp CC--SSHHHHTSSTTG-----------------------GGG--CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred cc--cccccccCcccc-----------------------eec--CCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 00 000000000000 000 000111234556666666666542
Q ss_pred ----CcEEEEECcCCcccceecCccccc--cccccCcEEEEEECCCCC---EEEEEeCCCeEEEEECCCCCeeeeEecCc
Q 004270 446 ----GWIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSRWEVGC 516 (764)
Q Consensus 446 ----g~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 516 (764)
+.|..+|..+|+.+-.+....... .......+. +....+|+ .++.++.+|.+.++|..+++.+...+...
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~ 346 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence 358999999998887765211000 001112221 22224663 57788899999999999999887765432
Q ss_pred --------------ce--------------------------EEEEEeecCCEEEEEe----------------------
Q 004270 517 --------------SL--------------------------VKIVYHRVNGLLATVA---------------------- 534 (764)
Q Consensus 517 --------------~i--------------------------~~~~~s~~~~~la~~~---------------------- 534 (764)
++ ..++++|+..++++..
T Consensus 347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 426 (571)
T 2ad6_A 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence 11 2467888888777764
Q ss_pred ---------------CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEeeCC
Q 004270 535 ---------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599 (764)
Q Consensus 535 ---------------~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 599 (764)
.++.|..||..+++.+.++.... .+....+...+..++.++.|+.|+.||..+|+.+..++...
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 34789999999999888876432 23333333345677779999999999999999999998765
Q ss_pred ceE--EEEEcCCCCeEEEEE
Q 004270 600 SIT--ALSLSPNMDVLATAH 617 (764)
Q Consensus 600 ~v~--~l~~sp~g~~lat~~ 617 (764)
.+. .+.+..+|+.++...
T Consensus 506 ~~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp CCCSCCEEEEETTEEEEEEE
T ss_pred CcEeeeEEEEECCEEEEEEE
Confidence 532 234556776555443
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=4.6e-07 Score=100.57 Aligned_cols=266 Identities=10% Similarity=0.049 Sum_probs=175.0
Q ss_pred CeEEEEEEeCCeEEEEecCCCeEEEecCCCCc----------c-eEEEEEeCCeEEEEE-CCeEEEEec--CceEEEecc
Q 004270 26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPK----------K-IRALASYRDYTFAAY-GNHIAVVKR--AHQVATWSR 91 (764)
Q Consensus 26 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~-I~~~~~~~~~~~~a~-g~~i~vw~~--~~~~~~~~~ 91 (764)
++.+.+++.++.+.-+|..+++.+........ . -..+++..+.+|+.+ .+.|+.+|. ++.+-+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 45566667788999999999999887632211 1 134566777888877 445999984 566555332
Q ss_pred cc----cceE-EEEEeCCEEEEEec------CCcEEEEEccCCcccccceeeEecC------------------------
Q 004270 92 HS----AKVN-LLLLFGEHILSIDI------DGNMFIWAFKGIEENLAPVGHVKLD------------------------ 136 (764)
Q Consensus 92 h~----~~v~-~l~~~g~~l~s~~~------dg~v~vWd~~~~~~~~~~~~~~~~~------------------------ 136 (764)
.. ..+. .-...+..++.+.. +|.|..+|..+++... .+...
T Consensus 146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W----~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW----RFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE----EEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEE----EecccCCCCCccccccccccccccCCccc
Confidence 11 1111 11224556666543 5889999999998733 22210
Q ss_pred -------CccccEEEEeCCCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEEcC--CC-------
Q 004270 137 -------DKFTPTCIMHPDTYLNKVIVGSQEGS-------------------LQLWNISTKKKLYEFKG--WG------- 181 (764)
Q Consensus 137 -------~~~~~~~~~~p~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~--h~------- 181 (764)
.......++.|.. +.+++++.++. |..+|.++|+.+..++. |.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp HHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred eeeeCCCCccccceEEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 0111235677777 78888887763 99999999999998864 22
Q ss_pred CCeEEEEEcCCCC---EEEEEEcCCeEEEEEccCCceEEEEeccCC-----------CCE--------------------
Q 004270 182 SSISSCVSSPALD---VVAVGCSDGKIHVHNVRYDEELVTFTHSMR-----------GAV-------------------- 227 (764)
Q Consensus 182 ~~i~~~~~sp~~~---~la~g~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~v-------------------- 227 (764)
.+.....+..+|+ .+++++.+|.+.++|..+|+.+........ .++
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G 379 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence 3333334444665 688999999999999999998865543210 001
Q ss_pred ----EEEEEeeCCCCEEEEE------------------------------------eCCCcEEEEECCCceeeeeeeccc
Q 004270 228 ----TALAFSSDGQPLLASG------------------------------------ASSGVISIWNLEKRRLQSVIREAH 267 (764)
Q Consensus 228 ----~~l~fs~d~~~~l~sg------------------------------------~~dg~i~iwd~~~~~~~~~~~~~h 267 (764)
..++++|+.. +++.. ..+|.|..||+.+++.+.... +
T Consensus 380 ~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~--~ 456 (668)
T 1kv9_A 380 AHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP--Y 456 (668)
T ss_dssp SSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE--E
T ss_pred ccCCCcceECCCCC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc--C
Confidence 1267777766 44431 123789999999999988876 3
Q ss_pred ccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC
Q 004270 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (764)
Q Consensus 268 ~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (764)
........+...+.+++.++.|+.++.||.++.
T Consensus 457 ~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 457 PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CCCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 334444455557778999999999999988766
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.99 E-value=1.1e-06 Score=95.04 Aligned_cols=376 Identities=9% Similarity=0.029 Sum_probs=205.1
Q ss_pred CEEEEEeC-CCcEEEEeC-CCCeEEEEEcCCCCC-----------eEEEEEcCCCCE----EEEEEcCCeEEEEEccCCc
Q 004270 152 NKVIVGSQ-EGSLQLWNI-STKKKLYEFKGWGSS-----------ISSCVSSPALDV----VAVGCSDGKIHVHNVRYDE 214 (764)
Q Consensus 152 ~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------i~~~~~sp~~~~----la~g~~dg~i~iwd~~~~~ 214 (764)
..|++++. ++.|.-+|. .+|+.+.++...... ...++++|.+.. |++++.|+.+.-+|.++|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 47888888 899999999 999999988653221 123456554444 8888999999999999999
Q ss_pred eEEEEeccCC---CCEEEEEEeeCCCCEEEEEe------CCCcEEEEECCCceeeeeeeccccc----------------
Q 004270 215 ELVTFTHSMR---GAVTALAFSSDGQPLLASGA------SSGVISIWNLEKRRLQSVIREAHDN---------------- 269 (764)
Q Consensus 215 ~~~~~~~~~~---~~v~~l~fs~d~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~h~~---------------- 269 (764)
.+.+...... ..+.+--...++. +++++ .+|.|+.+|.++|+.+.........
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~~g~--V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 220 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVVKDK--VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTE--EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEeecCCCCCccceeecCCEEECCE--EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence 9988764311 0122111112453 45554 3799999999999988776622111
Q ss_pred --------------------Ce-eEEEEecCCCEEEEEcCCC----------------cEEEEEecCCCCCceeeEeccC
Q 004270 270 --------------------AI-ISLHFFANEPVLMSASADN----------------SIKMWIFDTTDGDPRLLRFRSG 312 (764)
Q Consensus 270 --------------------~v-~~l~~~~~~~~l~s~~~d~----------------~i~vw~~~~~~~~~~~~~~~~~ 312 (764)
.+ ..+++.++..+++.+..++ +|..+|.++.. .+-......
T Consensus 221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~--~~W~~q~~~ 298 (599)
T 1w6s_A 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE--AKFGYQKTP 298 (599)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC--EEEEEESST
T ss_pred cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc--eeeEeecCC
Confidence 00 1345666777777776553 56666665542 222222222
Q ss_pred CCC-------CCeeEEEe-cCC---CEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeee
Q 004270 313 HSA-------PPLCIRFY-ANG---RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (764)
Q Consensus 313 h~~-------~v~~i~~~-~~~---~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (764)
|.. .+.-+... .+| ..++.++.+|.+.++|..+++............-...+.. ..-.|+..-..
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~----~~g~p~~~~~~ 374 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL----KTGQPVRDPEY 374 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT----TTCCEEECGGG
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc----CCCceeecccc
Confidence 321 11222222 467 4677788999999999988876554321100000000000 00000000000
Q ss_pred cccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce
Q 004270 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (764)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~ 461 (764)
.. .. ........+.......-..++++|+..++++...+................
T Consensus 375 ~~------------------------~~-~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~ 429 (599)
T 1w6s_A 375 GT------------------------RM-DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQ 429 (599)
T ss_dssp CC------------------------CT-TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred CC------------------------CC-CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCc
Confidence 00 00 000000011111112233678999999998887764433322111000000
Q ss_pred ecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEE
Q 004270 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 541 (764)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v 541 (764)
..-+.-..+..+|.+. -.....+|.|..||+.+++.+.......+...-.+...+.++++++.|+.++.
T Consensus 430 ----------~~~g~~~~~~~~p~~~-~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 430 ----------FFVGATLNMYPGPKGD-RQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp ----------CCCCEEEEEEECTTSB-TTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred ----------ceecccceeccCCcCC-cccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEE
Confidence 0000000111122110 00000358899999999999888876544433334556888888999999999
Q ss_pred EEccCCeEEEEeecCCCCe-eEEEEcCCCcE
Q 004270 542 FDVVALRMVRKFEGHTDRI-TDFCFSEDGKW 571 (764)
Q Consensus 542 ~d~~~~~~~~~~~~h~~~i-~~l~~s~dg~~ 571 (764)
||.++++.+.+++-..+.+ .-+.+..+|+.
T Consensus 499 ~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 499 RDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 9999999999887543222 23555667763
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.99 E-value=5.3e-08 Score=91.20 Aligned_cols=182 Identities=12% Similarity=0.084 Sum_probs=135.4
Q ss_pred CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEE-EEeCCCeEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVW 501 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iw 501 (764)
.....+.++ ++.+..+.+.+| .|+.+|+.+++....... .....-.++++. ++.|. ..-.++.+.+|
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-------~~~~FgeGit~~--g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-------GKRYFGEGISDW--KDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-------CTTCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-------CCccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 445788888 665556666665 999999999999887752 111122334544 44444 44468999999
Q ss_pred ECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC--C---CCeeEEEEcCCCcEEEEEe
Q 004270 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH--T---DRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h--~---~~i~~l~~s~dg~~l~s~s 576 (764)
|..+.+.+.++..... ...+++|++.|+.+..++.|+++|..+.+.+.++.-. . ..++.+.|. +|+..+..-
T Consensus 113 D~~t~~~~~ti~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 113 NIRNLRQVRSFNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp ETTTCCEEEEEECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ECccCcEEEEEECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 9999999999987643 3445577888888777889999999999988886642 1 335567887 787666666
Q ss_pred CCCcEEEEEcCccceEEEEeeC-------------CceEEEEEcCCCCeEEEEEeC
Q 004270 577 MDGSLRIWDVILARQIDAIHVD-------------VSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 577 ~dg~i~iwd~~~~~~~~~~~~~-------------~~v~~l~~sp~g~~lat~~~d 619 (764)
.+..|.+.|..+|+.+..+... ...+.+||+|+++.|.+++..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 7889999999999999998763 136899999999888888754
No 255
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=1.9e-08 Score=105.51 Aligned_cols=223 Identities=9% Similarity=0.056 Sum_probs=157.1
Q ss_pred EeCCEEEEEecCC-cEEEEEccCCcccccceeeEecCC-ccccEEEE-e-CCCCCCEEEEEe------------------
Q 004270 101 LFGEHILSIDIDG-NMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIM-H-PDTYLNKVIVGS------------------ 158 (764)
Q Consensus 101 ~~g~~l~s~~~dg-~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-p~~~~~~l~~~~------------------ 158 (764)
+||++|+....++ .|.+-|+.+.+. ...++... .....+++ + |++ +++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~----~~ii~ip~g~~phg~~~~~~p~~--~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKC----DAILEIPNAKGIHGLRPQKWPRS--NYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEE----EEEEECSSCCSEEEEEECCSSBC--SEEEEEECSCEESSCSSSSTTCGGG
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceE----eeEEeCCCCCCCcceeeeecCCC--cEEEEecccccccCCCCcccccccc
Confidence 3899999988755 499999999887 45444433 22334444 5 888 7888885
Q ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCC-----------------------------------
Q 004270 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG----------------------------------- 203 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg----------------------------------- 203 (764)
.++.+.++|..+.+.+.++.--. .-..++++|+|+++++.+.+.
T Consensus 173 ~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred cCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 34679999999999999887423 456788999999999988553
Q ss_pred ---eEEEEEccC--Cce-EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce------------eeeeeec
Q 004270 204 ---KIHVHNVRY--DEE-LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR------------LQSVIRE 265 (764)
Q Consensus 204 ---~i~iwd~~~--~~~-~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~------------~~~~~~~ 265 (764)
.|.+.|.++ ++. +..+..+ ....++.++|||+++++++..+.+|.++|+.+.+ ....+.
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~- 328 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE- 328 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-
T ss_pred EECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-
Confidence 366667666 444 4555443 4567899999999777777788999999998653 233332
Q ss_pred ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCC------CCCceeeEeccCCCCC-----CeeEEEecCCCEEEEEeC
Q 004270 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT------DGDPRLLRFRSGHSAP-----PLCIRFYANGRHILSAGQ 334 (764)
Q Consensus 266 ~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~------~~~~~~~~~~~~h~~~-----v~~i~~~~~~~~l~s~~~ 334 (764)
-......++|+|+|...++.-.|++|.+|+++.. +.....+..+..|..+ -..+..+|||++|+++..
T Consensus 329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 3456889999999954556667999999999862 1122455555555432 233456789999998753
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.98 E-value=5.3e-07 Score=87.96 Aligned_cols=250 Identities=13% Similarity=0.015 Sum_probs=153.7
Q ss_pred CEEEEEEcCCeEEEEEccCCce-----EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc
Q 004270 194 DVVAVGCSDGKIHVHNVRYDEE-----LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD 268 (764)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~ 268 (764)
.+|..+.. +.|+.+++..... ...+... ...+..++|++++..++++-..++.|..+++..+.....+. ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~-~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~ 78 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-QDL 78 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-TTC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCC-CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-CCC
Confidence 45555554 5788888875432 1112221 24578999999766466666677899999997665433332 223
Q ss_pred cCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---CcEEEEEee
Q 004270 269 NAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVI 344 (764)
Q Consensus 269 ~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~ 344 (764)
.....+++.+++..|+ +-...+.|.+++++... .+.+ .......+..++++|++..|+.+... +.|..+++.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 5678999999765554 44556788888776432 1222 11222467899999976666555432 456555542
Q ss_pred cccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCC
Q 004270 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (764)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (764)
... ... +.. ...
T Consensus 155 g~~-~~~-----------------------------------------------------------------~~~--~~~ 166 (267)
T 1npe_A 155 GTN-RRI-----------------------------------------------------------------LAQ--DNL 166 (267)
T ss_dssp SCC-CEE-----------------------------------------------------------------EEC--TTC
T ss_pred CCC-cEE-----------------------------------------------------------------EEE--CCC
Confidence 110 000 000 011
Q ss_pred CCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 425 TAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
.....++++++++.|+++.. .+.|.+++........... ......+++++ .+.++++....+.|..+|.
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---------~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---------GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---------CCCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---------CCCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence 45788999998877766654 5799999997644332221 12234567765 3444455546689999999
Q ss_pred CCCCeeeeEecCc--ceEEEEEeecCC
Q 004270 504 KGRDLKSRWEVGC--SLVKIVYHRVNG 528 (764)
Q Consensus 504 ~~~~~~~~~~~~~--~i~~~~~s~~~~ 528 (764)
.+++.+..+.... ....+++.|++.
T Consensus 237 ~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 237 AISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCceEEEccccccccceeeecCccC
Confidence 9999888886553 467788887764
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.97 E-value=2.4e-07 Score=100.36 Aligned_cols=344 Identities=10% Similarity=0.034 Sum_probs=188.0
Q ss_pred EEEEEeC-CCcEEEEEC-CCceeeeeeeccccc----------CeeEEEEecCCCE----EEEEcCCCcEEEEEecCCCC
Q 004270 239 LLASGAS-SGVISIWNL-EKRRLQSVIREAHDN----------AIISLHFFANEPV----LMSASADNSIKMWIFDTTDG 302 (764)
Q Consensus 239 ~l~sg~~-dg~i~iwd~-~~~~~~~~~~~~h~~----------~v~~l~~~~~~~~----l~s~~~d~~i~vw~~~~~~~ 302 (764)
.+++++. ++.|.-+|. .+|+.+......... ....+++.|.+.. ++.++.|+.+..+|..++..
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666676 789999999 899888776522111 0123455444434 78888899888887665532
Q ss_pred CceeeEeccCCC--CCCeeEEEecCCCEEEEEe------CCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccC
Q 004270 303 DPRLLRFRSGHS--APPLCIRFYANGRHILSAG------QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (764)
Q Consensus 303 ~~~~~~~~~~h~--~~v~~i~~~~~~~~l~s~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (764)
.++ .....+. ..+.+--...++ .++.++ .++.|+.+|..+++..-.+.......... +. ...-...
T Consensus 144 ~W~--~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~-~~--p~~~~~~ 217 (599)
T 1w6s_A 144 VWK--VENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL-LA--SDFNIKN 217 (599)
T ss_dssp EEE--EECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT-BC--TTTTTTC
T ss_pred EEe--ecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc-cc--ccccccc
Confidence 111 1111110 111111011144 455444 37899999998887665543321110000 00 0000000
Q ss_pred ceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCC--------
Q 004270 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-------- 446 (764)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g-------- 446 (764)
|...- .......|.. ..... +....-...++.+....+++++.++
T Consensus 218 ~~~g~--~~~g~~tw~g-----------------------~~~~~--gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r 270 (599)
T 1w6s_A 218 PHYGQ--KGLGTGTWEG-----------------------DAWKI--GGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR 270 (599)
T ss_dssp GGGCC--TTHHHHTSST-----------------------TGGGG--CCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred ccccc--cccccccCCC-----------------------cceec--CCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence 00000 0000000000 00000 0001112346667778888887653
Q ss_pred --------cEEEEECcCCcccceecCccccc--cccccCcEEEEEEC-CCC---CEEEEEeCCCeEEEEECCCCCeeeeE
Q 004270 447 --------WIERFNLQSGISRGSYLDMSERS--NYAHNGEVVGVACD-STN---TLMISAGYHGDIKVWDFKGRDLKSRW 512 (764)
Q Consensus 447 --------~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~-~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~ 512 (764)
.|..+|..+|+.+-.+....... .......+. +... .+| +.++.++.+|.+.++|..+++.+...
T Consensus 271 ~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 271 PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 79999999999887775311000 000111222 2222 467 46777889999999999999988766
Q ss_pred ecCc--------------ce--------------------------EEEEEeecCCEEEEEe------------------
Q 004270 513 EVGC--------------SL--------------------------VKIVYHRVNGLLATVA------------------ 534 (764)
Q Consensus 513 ~~~~--------------~i--------------------------~~~~~s~~~~~la~~~------------------ 534 (764)
.... ++ ..++++|+.+++++..
T Consensus 350 ~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~ 429 (599)
T 1w6s_A 350 KLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQ 429 (599)
T ss_dssp ESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCc
Confidence 5321 11 2356777666655431
Q ss_pred ---------------------CCCeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEE
Q 004270 535 ---------------------DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593 (764)
Q Consensus 535 ---------------------~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~ 593 (764)
..|.+.-||+.+++.+-+.... .+...-.+...+..++.++.|+.++.||..+|+.+.
T Consensus 430 ~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 430 FFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 3478999999999988776522 122211122356677789999999999999999999
Q ss_pred EEeeCCce--EEEEEcCCCCe-EEEEE
Q 004270 594 AIHVDVSI--TALSLSPNMDV-LATAH 617 (764)
Q Consensus 594 ~~~~~~~v--~~l~~sp~g~~-lat~~ 617 (764)
.++....+ .-+.+..+|+. +++..
T Consensus 509 ~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 509 KFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 99876642 33556677764 44443
No 258
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=1e-06 Score=85.93 Aligned_cols=241 Identities=13% Similarity=0.071 Sum_probs=149.5
Q ss_pred CcEEEEECCCceee-----eeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeE
Q 004270 247 GVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (764)
Q Consensus 247 g~i~iwd~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (764)
+.|+.+++...... ..+. .....+..++|.+++..|+ +-...+.|..++.+... ...........+..+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~~~~~~~~~~~p~~i 84 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PTTIIRQDLGSPEGI 84 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CEEEECTTCCCEEEE
T ss_pred CeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----cEEEEECCCCCccEE
Confidence 47888888765421 1122 2234578999999765555 44456788888876442 112222223567899
Q ss_pred EEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCC
Q 004270 321 RFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (764)
Q Consensus 321 ~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (764)
++++++..++.+ ...+.|.++++..... ..+
T Consensus 85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~----------------------------------------------- 116 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVL----------------------------------------------- 116 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-----------------------------------------------
T ss_pred EEEecCCeEEEEECCCCEEEEEEcCCCCE-EEE-----------------------------------------------
Confidence 999976555554 4556777777532110 000
Q ss_pred ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec---CCcEEEEECcCCcccceecCccccccccccCc
Q 004270 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476 (764)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 476 (764)
.. ........++++|++..++++.. .+.|..+++.... ...+. ......
T Consensus 117 -----------------~~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~-------~~~~~~ 168 (267)
T 1npe_A 117 -----------------FD---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA-------QDNLGL 168 (267)
T ss_dssp -----------------EC---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE-------CTTCSC
T ss_pred -----------------EE---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE-------ECCCCC
Confidence 00 01145688999997777666654 3688888876432 22221 122346
Q ss_pred EEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEe-CCCeEEEEEccCCeEEEEee
Q 004270 477 VVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRMVRKFE 554 (764)
Q Consensus 477 v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~~~~~~~~~ 554 (764)
..++++++++..|..+ ...+.|.++|..................++. ++..|.++. .++.|.++|..+++.+..+.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 7899999987666544 4668999999986554444443344456654 455555554 56899999999999988886
Q ss_pred cCC-CCeeEEEEcCCCc
Q 004270 555 GHT-DRITDFCFSEDGK 570 (764)
Q Consensus 555 ~h~-~~i~~l~~s~dg~ 570 (764)
... .....+++.|++.
T Consensus 247 ~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 PHKQTRLYGITIALSQC 263 (267)
T ss_dssp CSSCCCCCCEEEECSCC
T ss_pred cccccccceeeecCccC
Confidence 443 3477888888865
No 259
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.92 E-value=0.00024 Score=80.72 Aligned_cols=513 Identities=11% Similarity=0.029 Sum_probs=269.4
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCeEEEEecCc-eEEEecc-----cccceEE
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAH-QVATWSR-----HSAKVNL 98 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~i~vw~~~~-~~~~~~~-----h~~~v~~ 98 (764)
....+-+++. +-+..||..+.+...........|.++.......++++.+.+..++..+ .+..+.. ....|.+
T Consensus 72 ~~g~lWigT~-~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~ 150 (758)
T 3ott_A 72 DNTYLYMGTD-NGILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYS 150 (758)
T ss_dssp TTTEEEEEET-TEEEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEE
T ss_pred CCCcEEEEeC-CCeEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEE
Confidence 3445555554 5588999988754332122345688887777788899988899998643 3333311 1346788
Q ss_pred EEEe-CCEEEEEecCCcEEEEEccCCcccccceeeE-ecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004270 99 LLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHV-KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176 (764)
Q Consensus 99 l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 176 (764)
+..+ ...|..++.. -+..++..+........... ......+..+....++ +.|.+|+.. -+..+|..+++....
T Consensus 151 i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~--~~lWigt~~-Gl~~~~~~~~~~~~~ 226 (758)
T 3ott_A 151 IIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR--QCVWIGTEG-YLFQYFPSTGQIKQT 226 (758)
T ss_dssp EEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT--TEEEEEEEE-EEEEEETTTTEEEEE
T ss_pred EEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCC--CEEEEEECC-CCeEEcCCCCeEEec
Confidence 8775 3445555544 47778876654311000000 0011123333344444 567777754 588899887754332
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEecc-------CCCCEEEEEEeeCCCCEEEEEeCCCcE
Q 004270 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS-------MRGAVTALAFSSDGQPLLASGASSGVI 249 (764)
Q Consensus 177 ~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~l~fs~d~~~~l~sg~~dg~i 249 (764)
.......|.++....+|.+. +|+. +-+.+++..+++.. .+... ....|.++....+|. |-.|+..| +
T Consensus 227 ~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiGT~~G-l 300 (758)
T 3ott_A 227 EAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHN--IWLGTDYG-I 300 (758)
T ss_dssp EEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCC--EEEEESSS-E
T ss_pred cCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCC--EEEEeCCc-c
Confidence 11123458888888877654 4554 45788887765432 23211 124688988887776 55666666 5
Q ss_pred EEEECCCceeeeeee------cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC-CceeeEec----cCCCCCCe
Q 004270 250 SIWNLEKRRLQSVIR------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG-DPRLLRFR----SGHSAPPL 318 (764)
Q Consensus 250 ~iwd~~~~~~~~~~~------~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~-~~~~~~~~----~~h~~~v~ 318 (764)
.++.. ... ..... ......|.++.-..+|.+-+ |+.+| +..++...... ........ .-....|.
T Consensus 301 ~~~~~-~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 376 (758)
T 3ott_A 301 SLSRY-NSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR 376 (758)
T ss_dssp EEECC-CC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEE
T ss_pred ccccc-CCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceE
Confidence 55433 221 11111 01134578887777776444 44444 44443222110 00111100 01123467
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270 319 CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (764)
Q Consensus 319 ~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (764)
++.-..+|+.- .|+. +-+..++..+++...
T Consensus 377 ~i~~d~~g~lW-igt~-~GL~~~~~~~~~~~~------------------------------------------------ 406 (758)
T 3ott_A 377 HIYEDKEQQLW-IATD-GSINRYDYATRQFIH------------------------------------------------ 406 (758)
T ss_dssp EEEECTTSCEE-EEET-TEEEEEETTTTEEEE------------------------------------------------
T ss_pred EEEECCCCCEE-EEeC-CcHhhcCcCCCcEEE------------------------------------------------
Confidence 77766666544 4454 457778764432110
Q ss_pred CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCC-----ccc---ceecCcccccc
Q 004270 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG-----ISR---GSYLDMSERSN 470 (764)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~-----~~~---~~~~~~~~~~~ 470 (764)
+..... . .......|.++...++|+ |.+|+..+-+.+++..+. ... ..+.. ..
T Consensus 407 ------~~~~~~---~-----~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~----~~ 467 (758)
T 3ott_A 407 ------YNIVDN---T-----GTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV----HN 467 (758)
T ss_dssp ------EEEECC---C-------CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG----GG
T ss_pred ------eecCCC---c-----CCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceeccccccc----cc
Confidence 000000 0 000124577777776665 566777777888886531 100 01100 00
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec----CcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 471 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
.-....|.++..+++|.+.+.++..+-|..+|..+++....... ...+.++....+|.+.+ |+.+ -+..||..+
T Consensus 468 ~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-Gl~~~~~~~ 545 (758)
T 3ott_A 468 GLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-GVMRINPKD 545 (758)
T ss_dssp TCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-EEEEECC--
T ss_pred ccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-ceEEEecCC
Confidence 01234699999999998776444445577888877654432111 23567777776676654 4444 478888765
Q ss_pred CeEEEE-eec-CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee-CCceEEEEEc-CCCCeEEEEEeCCCe
Q 004270 547 LRMVRK-FEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLS-PNMDVLATAHVDQNG 622 (764)
Q Consensus 547 ~~~~~~-~~~-h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~v~~l~~s-p~g~~lat~~~d~~~ 622 (764)
++...- ..+ ....|.++... +|++.++ +..| |..+|..+.+... +.. ...+....+. ++|. |..++.+|
T Consensus 546 ~~~~~~~~~gl~~~~i~~i~~~-~g~lWi~-t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~-l~fG~~~G-- 618 (758)
T 3ott_A 546 ESQQSISFGSFSNNEILSMTCV-KNSIWVS-TTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLFDPKEDC-VYLGGADG-- 618 (758)
T ss_dssp CCCCBCCCCC---CCEEEEEEE-TTEEEEE-ESSC-EEEEETTTCCEEE-C--CCCCCSEEEEETTTTE-EEEECBSE--
T ss_pred CceEEecccCCCccceEEEEEC-CCCEEEE-CCCC-eEEEcCCCceeEE-ecCCCCceeeeEEECCCCc-EEEecCCc--
Confidence 543210 111 12457888764 6765554 4555 7888987765432 211 1223344443 4665 55566664
Q ss_pred EEEEeccc
Q 004270 623 VYLWVNRC 630 (764)
Q Consensus 623 i~lW~~~~ 630 (764)
+..++.+.
T Consensus 619 l~~f~p~~ 626 (758)
T 3ott_A 619 FGISHSNL 626 (758)
T ss_dssp EEEEEC--
T ss_pred eEEEChhh
Confidence 66666543
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.92 E-value=3.5e-07 Score=85.56 Aligned_cols=182 Identities=12% Similarity=0.061 Sum_probs=136.0
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
.....+.++ ++.+..+.+.+|.|+.+|+.+++..... . .....-.++++.. ++..+..-.++.+.+||..
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-------LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-------CTTCCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-------CCCcceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence 445778887 3556666677789999999999988776 2 1122223456553 3455555678999999999
Q ss_pred CCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeec--CC---CCeeEEEEcCCCcEEEEEeCCC
Q 004270 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HT---DRITDFCFSEDGKWLLSSGMDG 579 (764)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~--h~---~~i~~l~~s~dg~~l~s~s~dg 579 (764)
+.+.+.++.....-. .+++|++.|+++..++.|+++|.++.+.++++.- +. ..++.+.|. +|+..+..-.+.
T Consensus 125 Tl~~~~ti~~~~eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 125 PPQRERTTRYSGEGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp TTEEEEEEECSSCCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred cCcEEEEEeCCCcee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 999999998764433 4447789888888899999999999999888764 22 245677887 787666665788
Q ss_pred cEEEEEcCccceEEEEeeC--------------CceEEEEEcCCCCeEEEEEeC
Q 004270 580 SLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 580 ~i~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~g~~lat~~~d 619 (764)
.|.+-|..+|+.+..+... ...+.+|++|+++.|.+++..
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 9999999999999998753 237899999988877777643
No 261
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.91 E-value=0.00018 Score=78.69 Aligned_cols=479 Identities=10% Similarity=-0.001 Sum_probs=266.8
Q ss_pred EEEEEeCCeEEEEecCCCeEEEecC-CCCcceEEEEEeCC--eEEEEE--CCeEEEEecC-ceEEE-ecccccceEEEEE
Q 004270 29 FVTVSVGKAFHIYNCAKLNLVLVGP-QLPKKIRALASYRD--YTFAAY--GNHIAVVKRA-HQVAT-WSRHSAKVNLLLL 101 (764)
Q Consensus 29 ~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~I~~~~~~~~--~~~~a~--g~~i~vw~~~-~~~~~-~~~h~~~v~~l~~ 101 (764)
++..+..+.|+..|+++.......+ ..-....+|++++. .+|.+- .+.|..++.. ..+.. +.........+++
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 4555678999999998765443332 22356789999974 556554 3348888753 33333 3322245667777
Q ss_pred e--CCEEEEEec-CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC--CCcEEEEeCCCCeEEEE
Q 004270 102 F--GEHILSIDI-DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ--EGSLQLWNISTKKKLYE 176 (764)
Q Consensus 102 ~--g~~l~s~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~ 176 (764)
| +..|+.++. .+.|.+.+++..... ..+.........+++.|.. ..|+.... .+.|...++........
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~~~----~l~~~~l~~P~~iavdp~~--G~lY~tD~g~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQHRQ----VLVWKDLDSPRALALDPAE--GFMYWTEWGGKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTTCE----EEECSSCCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCcEE----EEEeCCCCCcccEEEccCC--CeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence 5 566655554 567888888765431 1111223345677888866 56777653 46777788754433333
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 004270 177 FKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (764)
Q Consensus 177 ~~~h~~~i~~~~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~ 255 (764)
+. .-.....++++++++.|..+.. .+.|...|+..... ..+... ......+++.. +. ++++-...+.|...|..
T Consensus 162 ~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~~P~glav~~-~~-ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 162 VP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LPHPFGLTQYQ-DY-IYWTDWSRRSIERANKT 236 (628)
T ss_dssp EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CSCEEEEEEET-TE-EEEEETTTTEEEEEETT
T ss_pred EC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CCCceEEEEEC-CE-EEEecCCCCEEEEEECC
Confidence 33 3566789999998877777654 57899999875443 333332 34566888765 33 66666667889999977
Q ss_pred Cceeeeeeecc----------cc-------------cCeeEEEEe-cCCC-----------------------EEEEEcC
Q 004270 256 KRRLQSVIREA----------HD-------------NAIISLHFF-ANEP-----------------------VLMSASA 288 (764)
Q Consensus 256 ~~~~~~~~~~~----------h~-------------~~v~~l~~~-~~~~-----------------------~l~s~~~ 288 (764)
+++....+... |. +....++.. |.+. +|+.+.
T Consensus 237 tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~- 315 (628)
T 4a0p_A 237 SGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ- 315 (628)
T ss_dssp TCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-
T ss_pred CCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-
Confidence 76544333210 10 111112221 1111 111111
Q ss_pred CCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEeecccccccccchhhhHHHhhccch
Q 004270 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (764)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (764)
...|+-..++.... .... ........+..++|.+.+..|+.+. ..+.|..++........
T Consensus 316 ~~~i~~i~l~~~~~-~~~~-l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~----------------- 376 (628)
T 4a0p_A 316 KSAINRMVIDEQQS-PDII-LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFT----------------- 376 (628)
T ss_dssp TTEEEEECCCTTCC-CCEE-CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-----------------
T ss_pred cceEEEEecccccC-ceEE-EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceE-----------------
Confidence 12222222221110 0000 0011123456777777554554443 34445544432111000
Q ss_pred hhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecC-C--CCCCCCeEEEEEccCCCEEE-EEe
Q 004270 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP-C--PENPTAVKACTISACGNFAV-LGT 443 (764)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~--~~~~~~v~~~~~s~~g~~l~-~g~ 443 (764)
.+.. . ......+..+++...++.|+ +-+
T Consensus 377 ------------------------------------------------v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~ 408 (628)
T 4a0p_A 377 ------------------------------------------------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE 408 (628)
T ss_dssp ------------------------------------------------EEC--------CCCEEEEEEETTTTEEEEEET
T ss_pred ------------------------------------------------EEEcccccccccCCcceEEeeccCCeEEEEcC
Confidence 0000 0 00124678899998876555 555
Q ss_pred cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCC--eEEEEECCCCCeeeeEecC-cceE
Q 004270 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHG--DIKVWDFKGRDLKSRWEVG-CSLV 519 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~-~~i~ 519 (764)
..+.|.+.++. |.....+. ........+|+++| .|.++++-.... .|...+++........... ....
T Consensus 409 ~~~~I~v~~~~-G~~~~~l~-------~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~ 480 (628)
T 4a0p_A 409 ATNVINVTRLD-GRSVGVVL-------KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPI 480 (628)
T ss_dssp TTTEEEEEETT-SCEEEEEE-------ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEE
T ss_pred CCCEEEEEECC-CCeEEEEE-------eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCcc
Confidence 67889999986 44433332 13345689999999 455555533322 5666666644433333322 5678
Q ss_pred EEEEeecCCEEEEEeC-CCeEEEEEccCCeEEEEee-cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe
Q 004270 520 KIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 596 (764)
Q Consensus 520 ~~~~s~~~~~la~~~~-d~~i~v~d~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 596 (764)
.+++.++++.|..+.. .+.|..++++... .+.+. ........|++.. +....+=...+.|...|..+|+....+.
T Consensus 481 gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 481 ALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 9999998877776654 5889999986543 33333 3344567777754 4444444466778888888777665554
No 262
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.90 E-value=1.1e-06 Score=83.68 Aligned_cols=190 Identities=11% Similarity=0.012 Sum_probs=139.3
Q ss_pred eEEEEEeCC-eEEEEEC----CeEEEEec--CceEEEec-ccccceEEEEEeCCEEEEEec-CCcEEEEEccCCcccccc
Q 004270 59 IRALASYRD-YTFAAYG----NHIAVVKR--AHQVATWS-RHSAKVNLLLLFGEHILSIDI-DGNMFIWAFKGIEENLAP 129 (764)
Q Consensus 59 I~~~~~~~~-~~~~a~g----~~i~vw~~--~~~~~~~~-~h~~~v~~l~~~g~~l~s~~~-dg~v~vWd~~~~~~~~~~ 129 (764)
...+++++| ..|+++| +.|.++|. ++.+.++. +...-...++++|+.|+.+.. ++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v---- 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN---- 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE----
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE----
Confidence 578999995 6667775 35999996 45555532 222233467788888877765 67899999999887
Q ss_pred eeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-----CCeEEEEEcCCCCEEEEEEcCCe
Q 004270 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG-----SSISSCVSSPALDVVAVGCSDGK 204 (764)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----~~i~~~~~sp~~~~la~g~~dg~ 204 (764)
+.++... ......+++++ ++++++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++...+....++.
T Consensus 99 ~~~i~~g--~~~g~glt~Dg--~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 99 IKNFTHQ--MKDGWGLATDG--KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEECC--SSSCCEEEECS--SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEECC--CCCeEEEEECC--CEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 6677654 11223466777 667777788999999999999988876321 236788888 6755554446789
Q ss_pred EEEEEccCCceEEEEeccC------------CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 205 IHVHNVRYDEELVTFTHSM------------RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~------------~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
|.+.|..+++.+..+.... ......++|+|+++.+++++...+.|...++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999999887420 1356899999999878888888899999887654
No 263
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.87 E-value=0.00034 Score=79.36 Aligned_cols=537 Identities=12% Similarity=0.118 Sum_probs=285.3
Q ss_pred cccceeeee-ecCCCcceEEecCCeEEEEEEeCCeEEEEecCCCeEEEec-CCCCcceEEEEEeCC-eEEEEECCeEEEE
Q 004270 4 FEPYKAIGY-ITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG-PQLPKKIRALASYRD-YTFAAYGNHIAVV 80 (764)
Q Consensus 4 ~~p~r~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~I~~~~~~~~-~~~~a~g~~i~vw 80 (764)
|..|+.+.. .++....++......++=+++.+| +..||-.+.+..... ......|.++....+ ..++++...+..|
T Consensus 9 ~~~f~~~~~gl~~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~Gl~~y 87 (758)
T 3ott_A 9 YQQFDNIYLGAEASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNGILVY 87 (758)
T ss_dssp CCCCEEECCCSSCCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTEEEEE
T ss_pred hhhhhccccccccceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCCeEEE
Confidence 344555432 122233333333444555555544 667886543322111 122456999888776 5778888889999
Q ss_pred ecCceEEEe--cccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe
Q 004270 81 KRAHQVATW--SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS 158 (764)
Q Consensus 81 ~~~~~~~~~--~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~ 158 (764)
|..+..... ......|.++..++..|..++.+ .+..+|..+++........-......+..+....++ .|.+|+
T Consensus 88 d~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lWigt 163 (758)
T 3ott_A 88 NYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDN---QIYVGT 163 (758)
T ss_dssp ETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTC---CEEEEE
T ss_pred eCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCC---CEEEEe
Confidence 965432221 11223577766556667777755 588888776554110000000112223333334444 466777
Q ss_pred CCCcEEEEeCCCCeEEEEE-cCC----CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEe
Q 004270 159 QEGSLQLWNISTKKKLYEF-KGW----GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS 233 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~-~~h----~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs 233 (764)
.+| |..+|..+++..... ... ...|.++...+++..|.+|+. +-+..+|..+++... +.......|.++...
T Consensus 164 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d 240 (758)
T 3ott_A 164 YNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALD 240 (758)
T ss_dssp TTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEEC
T ss_pred CCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEc
Confidence 665 888998776543221 111 234888888887776666664 458888987665322 221113468888888
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCceeeeeeec------ccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceee
Q 004270 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 234 ~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (764)
.+|. |..|+.+ -+.+++..+++....... -....|.++....++.+ -.|+..| +.+... . ......
T Consensus 241 ~~g~--lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~--~-~~~~~~ 312 (758)
T 3ott_A 241 GNGD--LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRY--N-SALQFI 312 (758)
T ss_dssp TTCC--EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECC--C-C-CEEE
T ss_pred CCCC--EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-cccccc--C-CceeEE
Confidence 7776 4556644 588888876654322210 12345888887777754 4444455 544321 1 111111
Q ss_pred Eec----cCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecc
Q 004270 308 RFR----SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (764)
Q Consensus 308 ~~~----~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (764)
... ......|.++.-..+|..-+ |+.+| +..++..++.... +
T Consensus 313 ~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~-~------------------------------- 358 (758)
T 3ott_A 313 PISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHD-A------------------------------- 358 (758)
T ss_dssp EHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCC-C-------------------------------
T ss_pred ecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccce-e-------------------------------
Confidence 110 01223567777666665444 45555 5555433211000 0
Q ss_pred cccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceec
Q 004270 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463 (764)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~ 463 (764)
..+.... .........|.++....+|+.- +|+ ++-+..|+..++.......
T Consensus 359 -------------------~~~~~~~--------~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~ 409 (758)
T 3ott_A 359 -------------------IWYRMGD--------KTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNI 409 (758)
T ss_dssp -------------------EEECTTC--------SSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEE
T ss_pred -------------------EEeccCC--------cCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeec
Confidence 0000000 0000112468888888887754 466 4579999988765432211
Q ss_pred CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----Cee---eeEec-----CcceEEEEEeecCCEE
Q 004270 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLK---SRWEV-----GCSLVKIVYHRVNGLL 530 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~---~~~~~-----~~~i~~~~~s~~~~~l 530 (764)
.... .......|.++..++++++. .|+..+-|..+|..+. ... ..+.. ...|.++...++|.+.
T Consensus 410 ~~~~--~~~~~~~v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 486 (758)
T 3ott_A 410 VDNT--GTYNTNWTYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVW 486 (758)
T ss_dssp ECCC----CBSSSEEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEE
T ss_pred CCCc--CCCCCceEEEEEEcCCCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEE
Confidence 0000 00123568899888887644 4665566777875421 111 11111 1347888888888877
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeec---CCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe---e-CCceEE
Q 004270 531 ATVADDLVIRLFDVVALRMVRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---V-DVSITA 603 (764)
Q Consensus 531 a~~~~d~~i~v~d~~~~~~~~~~~~---h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~-~~~v~~ 603 (764)
+.++..+-+..+|..+++....... ....+.++....+|++.+.. ..| +..+|..+++... +. . ...|.+
T Consensus 487 i~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~-~~~~gl~~~~i~~ 563 (758)
T 3ott_A 487 VLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQS-ISFGSFSNNEILS 563 (758)
T ss_dssp EEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCCB-CCCCC---CCEEE
T ss_pred EEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceEE-ecccCCCccceEE
Confidence 6444455688899887765443211 12457888888888876643 455 8888876654321 11 1 233777
Q ss_pred EEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 604 LSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 604 l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
+... +|.+.++ +.+ ++..++.+
T Consensus 564 i~~~-~g~lWi~-t~~--Gl~~~~~~ 585 (758)
T 3ott_A 564 MTCV-KNSIWVS-TTN--GLWIIDRK 585 (758)
T ss_dssp EEEE-TTEEEEE-ESS--CEEEEETT
T ss_pred EEEC-CCCEEEE-CCC--CeEEEcCC
Confidence 7764 6655444 444 37777754
No 264
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.87 E-value=0.00025 Score=77.50 Aligned_cols=509 Identities=10% Similarity=-0.016 Sum_probs=267.4
Q ss_pred eEEEEECCeEEEEecCce--EEEe-cccccceEEEEEe--CCEEEEEec-CCcEEEEEccCCcccccceeeEecCCcccc
Q 004270 68 YTFAAYGNHIAVVKRAHQ--VATW-SRHSAKVNLLLLF--GEHILSIDI-DGNMFIWAFKGIEENLAPVGHVKLDDKFTP 141 (764)
Q Consensus 68 ~~~~a~g~~i~vw~~~~~--~~~~-~~h~~~v~~l~~~--g~~l~s~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~ 141 (764)
.++++.+..|+..+.... ...+ .+.-.....|+++ ++.|+-++. ++.|..++++.... ...+........
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----EHVVEFGLDYPE 83 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSCCC
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----EEEEeCCCCCcc
Confidence 344566777888876432 2221 1223456778875 456665554 67788888876543 112222223456
Q ss_pred EEEEeCCCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEc--CCeEEEEEccCCceEEE
Q 004270 142 TCIMHPDTYLNKVIVG-SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS--DGKIHVHNVRYDEELVT 218 (764)
Q Consensus 142 ~~~~~p~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~--dg~i~iwd~~~~~~~~~ 218 (764)
.+++.+.+ +.|+.+ ...+.|.+.++........+...-.....+++.|....|..... .+.|...++.... ...
T Consensus 84 GlAvD~~~--~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG--KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTT 160 (628)
T ss_dssp EEEEETTT--TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred eEEEEeCC--CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEE
Confidence 77888776 556554 44678899998654333333344456789999997666766653 4678888876433 333
Q ss_pred EeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec
Q 004270 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (764)
Q Consensus 219 ~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (764)
+... -.....|++++++..+.++-...+.|...|+..... ..+. .......++++.. +.+.++-...+.|...+..
T Consensus 161 l~~~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 161 LVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EECC-CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 3332 467899999998773555555678899999876543 3333 3334556788765 4444554456767666543
Q ss_pred CCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---------CcEEEEEeecccccccccchhhhHHHhhccchhh
Q 004270 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 369 (764)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (764)
++.. . ..+......+..+......+.- +.+ ..+.+-... +.....-. .
T Consensus 237 tg~~--~--~~l~~~~~~p~~i~v~~~~~q~---~~n~C~~~ng~C~~~C~~~~~-~~~~C~C~---------------~ 293 (628)
T 4a0p_A 237 SGQN--R--TIIQGHLDYVMDILVFHSSRQS---GWNECASSNGHCSHLCLAVPV-GGFVCGCP---------------A 293 (628)
T ss_dssp TCCS--C--EEEECSCCSCCEEEEECGGGSC---CCCTTTTTGGGCSSEEEEETT-TEEEEECS---------------T
T ss_pred CCCc--e--EEEecCCCCcceeeeeeecccc---cceEeccCCCCcchhhhcCCC-CCeeEEcC---------------C
Confidence 3321 1 1111222233344332211000 000 000100000 00000000 0
Q ss_pred hhcc--CceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-CC
Q 004270 370 ELKL--KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GG 446 (764)
Q Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~g 446 (764)
...+ ....+.. ....++... ...++-..+.........+ + ......+.++++.+.++.|+.... .+
T Consensus 294 g~~l~~d~~~C~~-------~~~~Ll~s~--~~~i~~i~l~~~~~~~~~l-~-~~~~~~~~~ld~d~~~~~iy~sD~~~~ 362 (628)
T 4a0p_A 294 HYSLNADNRTCSA-------PTTFLLFSQ--KSAINRMVIDEQQSPDIIL-P-IHSLRNVRAIDYDPLDKQLYWIDSRQN 362 (628)
T ss_dssp TCEECTTSSCEEC-------CSSEEEEEE--TTEEEEECCCTTCCCCEEC-C-CTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CcEecccCCcCcc-------ccceeeeec--cceEEEEecccccCceEEE-E-ehhcCCceEEEEecCCCeEEEEecCcc
Confidence 0000 0000000 001111111 1223222222111101111 1 122356888999998777776654 57
Q ss_pred cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCeeeeEe-c-CcceEEEEE
Q 004270 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWE-V-GCSLVKIVY 523 (764)
Q Consensus 447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~-~-~~~i~~~~~ 523 (764)
.|+.+++........+.... ........+.+++++..++.| ++-+..+.|.+.+++. +....+. . -.....+++
T Consensus 363 ~I~r~~~~g~~~~~v~~~~~--~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~~l~~Pr~iav 439 (628)
T 4a0p_A 363 MIRKAQEDGSQGFTVVVSSV--PSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKGEQDRPRAVVV 439 (628)
T ss_dssp EEEEEETTSCSCEEEEC----------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEECTTCCEEEEEE
T ss_pred eEEEEEcCCCCceEEEEccc--ccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeCCCCceeeEEE
Confidence 88888876543322221000 000123468899999986655 4556778899999864 4443333 2 267899999
Q ss_pred eecCCEEEEEe-CCC--eEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCccceEEEEeeC-
Q 004270 524 HRVNGLLATVA-DDL--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVD- 598 (764)
Q Consensus 524 s~~~~~la~~~-~d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~- 598 (764)
.|...+|.... ... .|...+++...........-...+.|++.++++.|..+. ..+.|...++. |.....+...
T Consensus 440 dp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~~~ 518 (628)
T 4a0p_A 440 NPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLEDSN 518 (628)
T ss_dssp ETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSS
T ss_pred ecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEcCC
Confidence 99555554443 232 577777764433333333345678999999877776664 45789999985 5545555422
Q ss_pred -CceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 599 -VSITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 599 -~~v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
....+++... ..|..+......|..-+
T Consensus 519 ~~~P~glav~~--~~ly~tD~~~~~i~~~~ 546 (628)
T 4a0p_A 519 ILQPVGLTVFE--NWLYWIDKQQQMIEKID 546 (628)
T ss_dssp CSCEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEEEC--CEEEEEECCCCeEEEEE
Confidence 2366777643 56666665554454433
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.84 E-value=1.5e-06 Score=80.78 Aligned_cols=183 Identities=12% Similarity=0.084 Sum_probs=133.8
Q ss_pred CCeEEEEEccCCCEEEEEecC--CcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
.....+.|++ +.+..+.+.. ..|+.+|+.+++....... .....-.++++.. ++..+..-.++.+.+||
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-------~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-------PPPYFGAGIVAWR-DRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-------CTTCCEEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-------CCCcceeEEEEeC-CEEEEEEeeCCEEEEEE
Confidence 5667888886 4444444444 4899999999999887742 1111223444442 34445555789999999
Q ss_pred CCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCC-----CCeeEEEEcCCCcEEEEEeC
Q 004270 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-----DRITDFCFSEDGKWLLSSGM 577 (764)
Q Consensus 503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~-----~~i~~l~~s~dg~~l~s~s~ 577 (764)
..+.+.+.++.....-. .+.++++.|+++..++.|+++|..+.+.++++.-.. ..++.+.+. +|+..+..-.
T Consensus 92 ~~tl~~~~ti~~~~~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~ 168 (243)
T 3mbr_X 92 LATLTPRARFRYPGEGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL 168 (243)
T ss_dssp TTTTEEEEEEECSSCCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CCcCcEEEEEeCCCCce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence 99999999998775433 444678888888889999999999999888876421 345667776 7776666656
Q ss_pred CCcEEEEEcCccceEEEEeeC--------------CceEEEEEcCCCCeEEEEEeC
Q 004270 578 DGSLRIWDVILARQIDAIHVD--------------VSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 578 dg~i~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~g~~lat~~~d 619 (764)
+..|.+.|..+|+.+..+... ...+.++++|+++.|.+++..
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 789999999999999998743 137899999998888887754
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.80 E-value=3.5e-06 Score=78.25 Aligned_cols=185 Identities=10% Similarity=0.095 Sum_probs=131.6
Q ss_pred ccccc--eEEEEEeCCEEEEEec-C--CcEEEEEccCCcccccceeeEecCCc-cccEEEEeCCCCCCEEEE-EeCCCcE
Q 004270 91 RHSAK--VNLLLLFGEHILSIDI-D--GNMFIWAFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIV-GSQEGSL 163 (764)
Q Consensus 91 ~h~~~--v~~l~~~g~~l~s~~~-d--g~v~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~l~~-~~~dg~i 163 (764)
+|... ...+.+++..|..++. + +.|++.|+.+++. +..+..... +...+.+. + ++|+. .-.++.+
T Consensus 16 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv----~~~~~l~~~~fgeGi~~~--~--~~ly~ltw~~~~v 87 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRI----LQRAEVPPPYFGAGIVAW--R--DRLIQLTWRNHEG 87 (243)
T ss_dssp ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCE----EEEEECCTTCCEEEEEEE--T--TEEEEEESSSSEE
T ss_pred CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCE----EEEEeCCCCcceeEEEEe--C--CEEEEEEeeCCEE
Confidence 56544 4578887776665544 3 3799999999998 666666543 22333343 3 34554 4468899
Q ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCC----CCEEEEEEeeCCCCE
Q 004270 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR----GAVTALAFSSDGQPL 239 (764)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~l~fs~d~~~~ 239 (764)
.+||.++.+.+.++...... ..++++++.|.++..++.|.++|..+.+.+.++..... ..+..+.+. +|+ +
T Consensus 88 ~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-l 162 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-L 162 (243)
T ss_dssp EEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-E
T ss_pred EEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-E
Confidence 99999999999999754333 23346777787777789999999999999888875311 345667766 676 6
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeecc------------cccCeeEEEEecCCCEEEEEcC
Q 004270 240 LASGASSGVISIWNLEKRRLQSVIREA------------HDNAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~l~s~~~ 288 (764)
.+....+..|.+.|.++++.+..+..+ -..-.+.+++.|+++.|+..+.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 665556889999999999998887722 1135689999998877766664
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.77 E-value=2e-06 Score=86.51 Aligned_cols=200 Identities=9% Similarity=-0.036 Sum_probs=125.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeC---------
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGY--------- 494 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~--------- 494 (764)
..+..+++++++..|+++...+.+..++..++.... +.... ..........+++++ +|++.++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~-~~~~~---~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQ-LATSV---DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEE-EESEE---TTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEE-ecccC---CCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 356788999744456666555668888877654321 11000 001123578899999 9987776532
Q ss_pred --------CCeEEEEECCCCCeeeeEecCcceEEEEEeecCCEEEEE-eCCCeEEEEEccCCe--EEEEeecCCCCeeEE
Q 004270 495 --------HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALR--MVRKFEGHTDRITDF 563 (764)
Q Consensus 495 --------dg~v~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~~--~~~~~~~h~~~i~~l 563 (764)
++.|..||..+++.............++++++++.|.++ ..++.|.+|++.... ....+....+ ...+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi 234 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI 234 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence 367888988777654433333556789999999966665 556899999987521 1112211223 7889
Q ss_pred EEcCCCcEEEEEeC----------CCcEEEEEcCccceEEEEeeCC-----ceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 564 CFSEDGKWLLSSGM----------DGSLRIWDVILARQIDAIHVDV-----SITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 564 ~~s~dg~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~-----~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
++.++|++.++... .+.|..+|. .|+.+..+..+. .++++++ .+|+ |..++.....|..++.
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVY 311 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEec
Confidence 99999997776644 467888885 588888876542 3677777 3554 4444444446888887
Q ss_pred cccc
Q 004270 629 RCMF 632 (764)
Q Consensus 629 ~~~~ 632 (764)
+..+
T Consensus 312 ~~~~ 315 (322)
T 2fp8_A 312 DKKG 315 (322)
T ss_dssp ----
T ss_pred cccc
Confidence 6443
No 268
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.74 E-value=2.2e-06 Score=80.24 Aligned_cols=186 Identities=12% Similarity=0.126 Sum_probs=131.0
Q ss_pred ccccce--EEEEEeCCEE-EEEecCC--cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEe-CCCcEE
Q 004270 91 RHSAKV--NLLLLFGEHI-LSIDIDG--NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS-QEGSLQ 164 (764)
Q Consensus 91 ~h~~~v--~~l~~~g~~l-~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~-~dg~i~ 164 (764)
+|...- ..+.+++..| ++.+.+| .|+++|+.+++. +..+...... ...-+.+.+ ++|+... .++.+.
T Consensus 38 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv----~~~~~l~~~~-FgeGit~~g--~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 38 PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKT----LQQIELGKRY-FGEGISDWK--DKIVGLTWKNGLGF 110 (262)
T ss_dssp ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCE----EEEEECCTTC-CEEEEEEET--TEEEEEESSSSEEE
T ss_pred cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcE----EEEEecCCcc-ceeEEEEeC--CEEEEEEeeCCEEE
Confidence 555443 6677755554 4555555 799999999998 6666655432 222233344 4566554 578999
Q ss_pred EEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccC-C---CCEEEEEEeeCCCCEE
Q 004270 165 LWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-R---GAVTALAFSSDGQPLL 240 (764)
Q Consensus 165 iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~-~---~~v~~l~fs~d~~~~l 240 (764)
+||.++++.+.++...... ..++++++.|+....++.|.++|..+.+.+.++.... . ..+..+.|. +|+ +.
T Consensus 111 v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly 185 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IF 185 (262)
T ss_dssp EEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE
T ss_pred EEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EE
Confidence 9999999999999753322 3444677878777778899999999999988877531 1 335567886 776 66
Q ss_pred EEEeCCCcEEEEECCCceeeeeeecc-c----------ccCeeEEEEecCCCEEEEEcC
Q 004270 241 ASGASSGVISIWNLEKRRLQSVIREA-H----------DNAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~~~~~~~~~-h----------~~~v~~l~~~~~~~~l~s~~~ 288 (764)
+....++.|.+.|.++++.+..+... - ..-.+.++|+|+++.|+..+.
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 66667889999999999998888731 0 135689999999887777664
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.72 E-value=3.5e-06 Score=78.87 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=129.8
Q ss_pred ccccce--EEEEEeCCEEE-EEecCCcEEEEEccCCcccccceeeEecCCc-cccEEEEeCCCCCCEEEE-EeCCCcEEE
Q 004270 91 RHSAKV--NLLLLFGEHIL-SIDIDGNMFIWAFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIV-GSQEGSLQL 165 (764)
Q Consensus 91 ~h~~~v--~~l~~~g~~l~-s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~l~~-~~~dg~i~i 165 (764)
.|...- ..+.++++.|+ +.+.+|.|+++|+++++. +..+ .... +...+.+ .+ ++|+. .-.++.+.+
T Consensus 50 phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv----~~~~-l~~~~FgeGit~--~g--~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 50 PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQP----VWME-RLGNIFAEGLAS--DG--ERLYQLTWTEGLLFT 120 (268)
T ss_dssp ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSC----SEEE-ECTTCCEEEEEE--CS--SCEEEEESSSCEEEE
T ss_pred cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcE----EeEE-CCCCcceeEEEE--eC--CEEEEEEccCCEEEE
Confidence 454433 67888766655 555577899999999998 5555 4432 2223333 44 33444 446889999
Q ss_pred EeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCC----CCEEEEEEeeCCCCEEE
Q 004270 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR----GAVTALAFSSDGQPLLA 241 (764)
Q Consensus 166 wd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~l~fs~d~~~~l~ 241 (764)
||.++++.+.++...... ..++++++.|+++..++.|.++|..+.+.+.++..... ..+..+.|. +|+ +.+
T Consensus 121 ~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lya 195 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYA 195 (268)
T ss_dssp EETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred EECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEE
Confidence 999999999999753332 23346788888888889999999999999888875311 245677877 776 666
Q ss_pred EEeCCCcEEEEECCCceeeeeeecc------------cccCeeEEEEecCCCEEEEEcC
Q 004270 242 SGASSGVISIWNLEKRRLQSVIREA------------HDNAIISLHFFANEPVLMSASA 288 (764)
Q Consensus 242 sg~~dg~i~iwd~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~l~s~~~ 288 (764)
....+..|.+.|.++++.+..+..+ -..-.+.+++.|+++.|+..+.
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6657889999999999998888732 1135689999998776655553
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.69 E-value=1e-05 Score=80.51 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=115.9
Q ss_pred CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 502 (764)
..+..++++++|+++++..... .|..++..++........ ........++..+++..+++-..++.|.++|
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-------PDAIFLNGITPLSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-------TTCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-------CCccccCcccccCCCcEEEEECCCCeEEEEe
Confidence 3577899999999666554432 477788777765432221 1122345566666555555555688999998
Q ss_pred CCCCCe-eeeE-------e--cC-cceEEEEEeecCCEEEEEe-CCCeEEEEEccC-CeE--EEEeecCCCCeeEEEEcC
Q 004270 503 FKGRDL-KSRW-------E--VG-CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVA-LRM--VRKFEGHTDRITDFCFSE 567 (764)
Q Consensus 503 ~~~~~~-~~~~-------~--~~-~~i~~~~~s~~~~~la~~~-~d~~i~v~d~~~-~~~--~~~~~~h~~~i~~l~~s~ 567 (764)
..+++. +... . .. .....+ +++++.|.++. ..+.|.+|++.. ++. ...+.. ......+++++
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~ 221 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV 221 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC
Confidence 775421 1100 0 01 233444 88888666554 568999999874 321 112211 13467799999
Q ss_pred CCcEEEEEeCCCcEEEEEcCccceEEE--EeeC-CceEEEEEc---CCCCeEEEEEeCC
Q 004270 568 DGKWLLSSGMDGSLRIWDVILARQIDA--IHVD-VSITALSLS---PNMDVLATAHVDQ 620 (764)
Q Consensus 568 dg~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~-~~v~~l~~s---p~g~~lat~~~d~ 620 (764)
+|+++++....+.|.++|.. |+.... +... ..+++++|. |++..|..+...+
T Consensus 222 dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 99987777777899999964 766432 3333 348999999 8988887776654
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.60 E-value=2.7e-06 Score=94.63 Aligned_cols=114 Identities=7% Similarity=0.025 Sum_probs=73.9
Q ss_pred EEEEcC-CCCEEEEEEcCC-----------eEEEEEccCCce--EEEEeccCCCCEEEEEEeeCCCCEEEEEe-CCCcEE
Q 004270 186 SCVSSP-ALDVVAVGCSDG-----------KIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVIS 250 (764)
Q Consensus 186 ~~~~sp-~~~~la~g~~dg-----------~i~iwd~~~~~~--~~~~~~~~~~~v~~l~fs~d~~~~l~sg~-~dg~i~ 250 (764)
++++.+ ++++++.|+.++ .+.+||..+++- +..+...+.....++++..+++ +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 566777 888888887543 688999988763 3333333233445677888888 888887 456899
Q ss_pred EEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CC-----CcEEEEEecCC
Q 004270 251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-AD-----NSIKMWIFDTT 300 (764)
Q Consensus 251 iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d-----~~i~vw~~~~~ 300 (764)
+||..+.+-...-.......-.+++..+++++++.|+ .+ ..+.+||..+.
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 9999877544332211122223556677899888888 34 45777766543
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.58 E-value=1.8e-05 Score=79.49 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=99.4
Q ss_pred CCeEEEEEcc-CCCEEEEEec-----------------CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCC
Q 004270 425 TAVKACTISA-CGNFAVLGTA-----------------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (764)
Q Consensus 425 ~~v~~~~~s~-~g~~l~~g~~-----------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (764)
.....+++.+ +|++.++-.. +|.|..|+..++...... .......++++++++
T Consensus 126 ~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---------~~~~~p~gia~~~dg 196 (322)
T 2fp8_A 126 KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL---------KELHVPGGAEVSADS 196 (322)
T ss_dssp SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE---------EEESCCCEEEECTTS
T ss_pred cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec---------cCCccCcceEECCCC
Confidence 3467788898 8876665432 367888887766543221 112334679999999
Q ss_pred CEEEEE-eCCCeEEEEECCCCC--eeeeE-ecCcceEEEEEeecCCEEEEEeC----------CCeEEEEEccCCeEEEE
Q 004270 487 TLMISA-GYHGDIKVWDFKGRD--LKSRW-EVGCSLVKIVYHRVNGLLATVAD----------DLVIRLFDVVALRMVRK 552 (764)
Q Consensus 487 ~~l~s~-~~dg~v~iwd~~~~~--~~~~~-~~~~~i~~~~~s~~~~~la~~~~----------d~~i~v~d~~~~~~~~~ 552 (764)
+.|+.+ ...+.|.+|++.... ....+ .... ...+++.++|++.++... .+.|..+|.. ++.+..
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~ 274 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEV 274 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEE
Confidence 866555 566899999987532 11111 2223 778999999987766554 4678888874 777777
Q ss_pred eecCC----CCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 553 FEGHT----DRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 553 ~~~h~----~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
+.... ..++.+++ .++++.++....+.|.++++..
T Consensus 275 ~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 275 IPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 76442 35777777 4676666666778899998763
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.57 E-value=8.4e-05 Score=73.83 Aligned_cols=242 Identities=13% Similarity=0.070 Sum_probs=141.5
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC--C
Q 004270 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS--G 247 (764)
Q Consensus 170 ~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d--g 247 (764)
..+.+..+.. ......++++++++++++-..++.|..||... +....+.. ...+..+++.++|+ ++++.... .
T Consensus 21 ~~~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~--~~~p~gia~~~dG~-l~vad~~~~~~ 95 (306)
T 2p4o_A 21 PAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV--EGKVSGLAFTSNGD-LVATGWNADSI 95 (306)
T ss_dssp CEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC--SSEEEEEEECTTSC-EEEEEECTTSC
T ss_pred CceEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC--CCCceeEEEcCCCc-EEEEeccCCcc
Confidence 3455666654 35678899999998666666789999999764 44333333 35789999999998 66555432 2
Q ss_pred cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCCCceeeE--------eccCCCCCCee
Q 004270 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR--------FRSGHSAPPLC 319 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~--------~~~~h~~~v~~ 319 (764)
.|..+|..+++...............++..+++..+++-..++.|.++|.... ...... ...+.....+.
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~--~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP--SGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT--EEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC--cEeEEEECCccccccccCCCCcCCC
Confidence 47778877877544333112223345555555545555545776666654321 111110 00111123455
Q ss_pred EEEecCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeC
Q 004270 320 IRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (764)
Q Consensus 320 i~~~~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (764)
+ +++++.|+.+ ...+.|..+++........
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~----------------------------------------------- 204 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE----------------------------------------------- 204 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCC-----------------------------------------------
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc-----------------------------------------------
Confidence 5 7777766554 4567788888753110000
Q ss_pred CceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc--eecCccccccccccCc
Q 004270 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--SYLDMSERSNYAHNGE 476 (764)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~--~~~~~~~~~~~~h~~~ 476 (764)
...+.. ......++++++|++.++....+.|.+++.. ++... ... .....
T Consensus 205 ---------------~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~~~~~ 256 (306)
T 2p4o_A 205 ---------------PEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------QGVIG 256 (306)
T ss_dssp ---------------CEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------GTCTT
T ss_pred ---------------cEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------cccCC
Confidence 000000 0234568899999887777778899999975 44322 111 22356
Q ss_pred EEEEEEC---CCCCEEEEEeCC
Q 004270 477 VVGVACD---STNTLMISAGYH 495 (764)
Q Consensus 477 v~~l~~~---~~~~~l~s~~~d 495 (764)
.++++|. ++++.|+.++..
T Consensus 257 p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 257 STAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEEEECCSTTTTTEEEEEECT
T ss_pred ceEEEEecccCCCCEEEEECCC
Confidence 8899998 787777666543
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.56 E-value=0.00011 Score=69.35 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=112.5
Q ss_pred EEcCCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 004270 176 EFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (764)
Q Consensus 176 ~~~~h~~~i~~~~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~ 254 (764)
.+.+-...+..+++.|+++.| ++...++.|...|.. ++.+..+........-.+++.+++. ++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEc
Confidence 455666789999999987655 457778999999988 8888888654346788999998887 6666556788999987
Q ss_pred CCcee---eeeee-----cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecCCCC--CceeeEe----ccCCCCCCeeE
Q 004270 255 EKRRL---QSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG--DPRLLRF----RSGHSAPPLCI 320 (764)
Q Consensus 255 ~~~~~---~~~~~-----~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~--~~~~~~~----~~~h~~~v~~i 320 (764)
..... +.... .........++|.|.+..|+++.......+|.++.... ....... ...+...+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65432 22221 12344568999999998888877766777887762111 1111111 11234568899
Q ss_pred EEecC-CCEEEEEeCCCcEEEEEee
Q 004270 321 RFYAN-GRHILSAGQDRAFRLFSVI 344 (764)
Q Consensus 321 ~~~~~-~~~l~s~~~dg~i~i~d~~ 344 (764)
+++|. +++++.....+.+..+|..
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC
Confidence 99994 4455555556667777743
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.54 E-value=0.00078 Score=70.10 Aligned_cols=196 Identities=8% Similarity=0.024 Sum_probs=117.6
Q ss_pred ccEEEEeCC--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEEccC
Q 004270 140 TPTCIMHPD--TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRY 212 (764)
Q Consensus 140 ~~~~~~~p~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~ 212 (764)
...++++|+ . ..|+++...+.|+.+|..+++..... ........++++++|+ |.++...+ .+...+...
T Consensus 141 P~gvavd~~s~~--g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNY--DDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTT--CEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCC--CEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 456778884 3 46777766588999998877765543 3456689999999999 55554321 233344332
Q ss_pred CceE-EEEeccCCCCEEEEEEee-CCCCEEEEEeCCCcEEEEECCCceeeeee-ecccccCeeEEEEecCCCEE-EEEcC
Q 004270 213 DEEL-VTFTHSMRGAVTALAFSS-DGQPLLASGASSGVISIWNLEKRRLQSVI-REAHDNAIISLHFFANEPVL-MSASA 288 (764)
Q Consensus 213 ~~~~-~~~~~~~~~~v~~l~fs~-d~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l-~s~~~ 288 (764)
+... ..+.. ......+++.| +|. +.++-..++.|+.+|..++.....+ ..+....-..++|+|+++.| ++-..
T Consensus 217 ~~~~~~~~~~--~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 217 GFTERLSLCN--ARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp TTCCEEEEEE--CSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred Ceeccccccc--cCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 2211 11211 23456788999 565 6666557788999999877663322 21222233579999999855 44455
Q ss_pred CCcEEEEEecCCCCCceeeEeccC---------------CCCCCeeEEE---------ecCCCEEEEEeCCCcEEEEE
Q 004270 289 DNSIKMWIFDTTDGDPRLLRFRSG---------------HSAPPLCIRF---------YANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~---------------h~~~v~~i~~---------~~~~~~l~s~~~dg~i~i~d 342 (764)
.+.|..++++...+.......+.+ .-..+..+++ .++|.+.++-...+.|+.++
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 678888887643321110011111 1234667888 56666666655667777776
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.53 E-value=1.2e-05 Score=89.40 Aligned_cols=273 Identities=13% Similarity=-0.000 Sum_probs=153.7
Q ss_pred eEEEEec-CCCEEEEEcCCC-----------cEEEEEecCCCCCceeeEecc-CCCCCCeeEEEecCCCEEEEEeC-CCc
Q 004270 272 ISLHFFA-NEPVLMSASADN-----------SIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQ-DRA 337 (764)
Q Consensus 272 ~~l~~~~-~~~~l~s~~~d~-----------~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~-dg~ 337 (764)
.+.++.+ ++++++.|+.++ .+.+||..+ ..+..+..+. .+.....++++..+++.++.|+. +..
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC--CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence 3567777 888888887543 355565444 3444443332 23334445778889999999884 457
Q ss_pred EEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceee
Q 004270 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (764)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (764)
+.+||..+..-...
T Consensus 267 v~~yd~~t~~W~~~------------------------------------------------------------------ 280 (656)
T 1k3i_A 267 TSLYDSSSDSWIPG------------------------------------------------------------------ 280 (656)
T ss_dssp EEEEEGGGTEEEEC------------------------------------------------------------------
T ss_pred eEEecCcCCceeEC------------------------------------------------------------------
Confidence 88888754321110
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEEe-cC-----CcEEEEECcCCcccceecCc-cccccccccCcEEEEEECCCCCEEE
Q 004270 418 RPCPENPTAVKACTISACGNFAVLGT-AG-----GWIERFNLQSGISRGSYLDM-SERSNYAHNGEVVGVACDSTNTLMI 490 (764)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~-~~-----g~i~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (764)
..... ...-.++++.++|+.+++|+ .+ ..+.+||..+..-...-... .+.....+. ..+..++..++
T Consensus 281 ~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-----~~~~~~~~iyv 354 (656)
T 1k3i_A 281 PDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-----GLYRSDNHAWL 354 (656)
T ss_dssp CCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-----GGGTTTCSCCE
T ss_pred CCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-----ceeecCCceEE
Confidence 00000 01123445567899999988 34 47899999876533210000 000000111 11233455555
Q ss_pred EEeCCC---------eEEEEECCCCCeeeeEecC----------cceEEEEEee-cCCEEEEEeCCC-----------eE
Q 004270 491 SAGYHG---------DIKVWDFKGRDLKSRWEVG----------CSLVKIVYHR-VNGLLATVADDL-----------VI 539 (764)
Q Consensus 491 s~~~dg---------~v~iwd~~~~~~~~~~~~~----------~~i~~~~~s~-~~~~la~~~~d~-----------~i 539 (764)
.++.+| .+..||..+.......... ..-.++.+.. +++++++|+.++ .+
T Consensus 355 ~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v 434 (656)
T 1k3i_A 355 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII 434 (656)
T ss_dssp EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred EECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEE
Confidence 555444 5678888776543332211 1223344433 677888887532 68
Q ss_pred EEEEccCCeEEEEe--ecCCCCe-eEEEEcCCCcEEEEEeCC-----------CcEEEEEcCccceEEEEeeCC--c-eE
Q 004270 540 RLFDVVALRMVRKF--EGHTDRI-TDFCFSEDGKWLLSSGMD-----------GSLRIWDVILARQIDAIHVDV--S-IT 602 (764)
Q Consensus 540 ~v~d~~~~~~~~~~--~~h~~~i-~~l~~s~dg~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~--~-v~ 602 (764)
.+||..+.+-.... .-+..+. .+++..|+|++++.|+.+ ..+.+||..+++....-.... . ..
T Consensus 435 ~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs 514 (656)
T 1k3i_A 435 TLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHS 514 (656)
T ss_dssp ECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTE
T ss_pred EcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcccccc
Confidence 88888776554433 2233333 345677899999999864 468999998766433211111 1 33
Q ss_pred EEEEcCCCCeEEEEEe
Q 004270 603 ALSLSPNMDVLATAHV 618 (764)
Q Consensus 603 ~l~~sp~g~~lat~~~ 618 (764)
+..+.|||+.++.++.
T Consensus 515 ~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 515 ISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECTTSCEEEEECC
T ss_pred HhhcCCCcEEEecCCC
Confidence 4566799999999885
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.50 E-value=5.7e-05 Score=71.34 Aligned_cols=195 Identities=12% Similarity=0.100 Sum_probs=134.1
Q ss_pred CCCCCeEEEEEccCCCEE-EEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEE
Q 004270 422 ENPTAVKACTISACGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (764)
Q Consensus 422 ~~~~~v~~~~~s~~g~~l-~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 500 (764)
+....+..++++|+++.| ++...++.|..+|.+ +.....+.. .-....-+|++.+++.++++.-.++.+.+
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------DFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-------SSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-------CCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 444679999999987655 557788899999998 776666531 22356889999999987777667788999
Q ss_pred EECCCCCe---eeeEe-------cCcceEEEEEeecCCEEEEEeCCCeEEEEEccC---CeEEEEee-------cCCCCe
Q 004270 501 WDFKGRDL---KSRWE-------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVRKFE-------GHTDRI 560 (764)
Q Consensus 501 wd~~~~~~---~~~~~-------~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~---~~~~~~~~-------~h~~~i 560 (764)
+++..... +.... .......+++.|.++.|.++.+.....+|.+.. ...+..+. .+...+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98765442 22222 124568999999998887777766556665541 11122221 133457
Q ss_pred eEEEEcCC-CcEEEEEeCCCcEEEEEcCccceEEEEeeCC----------ceEEEEEcCCCCeEEEEEeCCCeEEEEe
Q 004270 561 TDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHVDV----------SITALSLSPNMDVLATAHVDQNGVYLWV 627 (764)
Q Consensus 561 ~~l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~v~~l~~sp~g~~lat~~~d~~~i~lW~ 627 (764)
.++++.|. +++++.......|.++|.. |+.+..+.... ..-.++|.++|++.++ +... -+|.+.
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n-~~y~f~ 250 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN-RFYRFT 250 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT-EEEEEE
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc-eEEEEE
Confidence 89999985 5666777788899999965 77777776542 3689999999985555 4444 355543
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=4.5e-05 Score=79.54 Aligned_cols=193 Identities=9% Similarity=0.052 Sum_probs=117.9
Q ss_pred CCeEEEEEccCCCEEEEEecC-C----cEEEEECcCCccc--ceecCccccccccccCcEEEEEECC-CCCEEEEEeCCC
Q 004270 425 TAVKACTISACGNFAVLGTAG-G----WIERFNLQSGISR--GSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHG 496 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~-g----~i~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg 496 (764)
.....++++++|++|+++... + .+..++.. +... ..+ .......+++++| ++.++++-..++
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l---------~~~~~p~giavdp~~g~lyv~d~~~~ 248 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITEL---------TKGQNCNGAETHPINGELYFNSWNAG 248 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEE---------EECSSCCCEEECTTTCCEEEEETTTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeee---------ccCCCceEEEEeCCCCEEEEEECCCC
Confidence 567899999999977666542 2 34444433 3222 111 1123456788999 677666666788
Q ss_pred eEEEEECCCCCeeeeEecC--cceEEEEEeecCCEEEE-EeCCCeEEEEEccC--CeE--EEEeecC---C---------
Q 004270 497 DIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLAT-VADDLVIRLFDVVA--LRM--VRKFEGH---T--------- 557 (764)
Q Consensus 497 ~v~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~-~~~d~~i~v~d~~~--~~~--~~~~~~h---~--------- 557 (764)
.|..++..++......... .....++++|++++|.+ -...+.|+.++.+. ++. +..+.+. .
T Consensus 249 ~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~ 328 (430)
T 3tc9_A 249 QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKK 328 (430)
T ss_dssp EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGG
T ss_pred EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcc
Confidence 9999998876653333332 45788999999995554 45678999988763 222 2222221 0
Q ss_pred ---CCee-EEEEc--------CCCcEEEEEeCCCcEEEEEcCccceEEEEee---------CC---------ceEEEEEc
Q 004270 558 ---DRIT-DFCFS--------EDGKWLLSSGMDGSLRIWDVILARQIDAIHV---------DV---------SITALSLS 607 (764)
Q Consensus 558 ---~~i~-~l~~s--------~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~---------~v~~l~~s 607 (764)
..-. .++.. ++|.+.++-...+.|+.++ ++|........ .. ....++++
T Consensus 329 a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd 407 (430)
T 3tc9_A 329 ARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYD 407 (430)
T ss_dssp CBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEE
T ss_pred eEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEE
Confidence 1122 44443 3466666656678899988 56754443321 11 37899999
Q ss_pred CCCCeEEEEEeCCCeEEEEec
Q 004270 608 PNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 608 p~g~~lat~~~d~~~i~lW~~ 628 (764)
|++..|..+......|+..+.
T Consensus 408 ~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 408 EERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp TTTTEEEEEEGGGTEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEcc
Confidence 965566666655545776654
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.43 E-value=0.00039 Score=70.20 Aligned_cols=245 Identities=13% Similarity=0.011 Sum_probs=146.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004270 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (764)
Q Consensus 184 i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 263 (764)
.+|.+..++ .+|+.+.. ..|+..++......... .. ...+..++|.+.+..++++-...+.|..+++........+
T Consensus 36 ~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~~-~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLL-NN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEEE-CS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEeecc-cceEEEeCCCCeeEEee-cC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345555553 34554443 55888887655443333 32 4568999999766636666667789999998876544443
Q ss_pred ecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC-C-CcEEE
Q 004270 264 REAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-D-RAFRL 340 (764)
Q Consensus 264 ~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d-g~i~i 340 (764)
. ........+++.+.+. +.++-...+.|.+.+++... ... ........+..++++|.+..|+.+.. . +.|..
T Consensus 112 ~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~--l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 112 S-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp C-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEE--EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred e-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--eEE--EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 3 2334567899987554 44555566788888776432 111 12233456789999996655555443 3 45555
Q ss_pred EEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCC
Q 004270 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (764)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (764)
+++..... ..+ .
T Consensus 187 ~~~dG~~~-~~~-------------------------------------------------------------------~ 198 (349)
T 3v64_C 187 SSMDGSGR-RII-------------------------------------------------------------------A 198 (349)
T ss_dssp EETTSCSC-EES-------------------------------------------------------------------C
T ss_pred EeCCCCCc-EEE-------------------------------------------------------------------E
Confidence 55432110 000 0
Q ss_pred CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEE
Q 004270 421 PENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (764)
Q Consensus 421 ~~~~~~v~~~~~s~~g~~l~~g~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 499 (764)
.........+++++++..|+.+.. .+.|..+++........+. .......++++. .+..+++-...+.|.
T Consensus 199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~--------~~~~~P~giav~-~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--------QGLPHPFAITVF-EDSLYWTDWHTKSIN 269 (349)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe--------CCCCCceEEEEE-CCEEEEecCCCCeEE
Confidence 011256789999987777766654 5689999987543322221 223456778884 455556666678888
Q ss_pred EEECCCCCeeeeEec
Q 004270 500 VWDFKGRDLKSRWEV 514 (764)
Q Consensus 500 iwd~~~~~~~~~~~~ 514 (764)
.++..+++....+..
T Consensus 270 ~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 270 SANKFTGKNQEIIRN 284 (349)
T ss_dssp EEETTTCCSCEEEEC
T ss_pred EEEccCCCccEEecc
Confidence 888666766655543
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.43 E-value=0.00078 Score=67.01 Aligned_cols=185 Identities=9% Similarity=-0.023 Sum_probs=115.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccC---CceEEEEeccCCCCEE
Q 004270 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRY---DEELVTFTHSMRGAVT 228 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~---~~~~~~~~~~~~~~v~ 228 (764)
.|+.+.. +.|+..|+.+.+....+.. ......++|++++..|..+. .++.|..+++.. +.....+....-....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444443 5699999988776665554 55678999999776666554 458999999875 1222222221124567
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC--CcEEEEEecCCCCCcee
Q 004270 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDGDPRL 306 (764)
Q Consensus 229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~i~vw~~~~~~~~~~~ 306 (764)
.+++.+.+..+.++-...+.|.+.++........+. ........+++.|.+..|+.+... +.|...+++... .+.
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~ 157 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYS 157 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEE
Confidence 899987555366666678899999987554333333 334567899999976666555443 566666554321 111
Q ss_pred eEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270 307 LRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI 344 (764)
Q Consensus 307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~ 344 (764)
+ ....-..+..+++++++..|+.+. ..+.|..+++.
T Consensus 158 ~--~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 158 L--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp E--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred E--EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 1 122345678999998776666554 45677777764
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.40 E-value=0.00084 Score=66.74 Aligned_cols=232 Identities=13% Similarity=0.041 Sum_probs=139.0
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (764)
...|+..|+.+.+....+. ....+.+++|.+.+..|+ +-...+.|..++++..................+..+++.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 4579999998877655544 345678999998765555 4445688888877652100011111222334568899987
Q ss_pred CCCEEE-EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 325 NGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 325 ~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
.+..|+ +-...+.|.++++..... ..+
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~-~~~--------------------------------------------------- 114 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKR-KTL--------------------------------------------------- 114 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSE-EEE---------------------------------------------------
T ss_pred cCCeEEEEECCCCEEEEEeCCCCce-EEE---------------------------------------------------
Confidence 554454 445667788777542110 000
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecC--CcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 481 (764)
.. ........++++|.+..++..... +.|..+++... ....+. ...-....+++
T Consensus 115 -------------~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~-------~~~~~~P~gla 170 (316)
T 1ijq_A 115 -------------FR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV-------TENIQWPNGIT 170 (316)
T ss_dssp -------------EE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEE-------CSSCSCEEEEE
T ss_pred -------------EE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEE-------ECCCCCceEEE
Confidence 00 011456889999977776666543 68888887543 222221 12234678999
Q ss_pred ECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEec---CcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 004270 482 CDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (764)
Q Consensus 482 ~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h 556 (764)
+++++..|..+. ..+.|..+|+........... ......+++. .+.++++-...+.|..++..+++.+..+...
T Consensus 171 ~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred EeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEecC
Confidence 998776665554 567899999885443333332 1345677774 3555555566788999998777766666543
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.38 E-value=0.00078 Score=68.01 Aligned_cols=184 Identities=9% Similarity=0.007 Sum_probs=116.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
.|+.+. ...|+..++........+.. ......++|.+....|.... ..+.|..+++........+... ......++
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~gla 122 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLA 122 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEE
T ss_pred eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-CCCccEEE
Confidence 455553 45588888876655554554 45578999998766666554 5688999998765543333322 34567899
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-C-CcEEEEEecCCCCCceeeEe
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-D-NSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d-~~i~vw~~~~~~~~~~~~~~ 309 (764)
+.+.+..+.++-...+.|.+.++........+. ........+++.|.+..|+.+.. . +.|...+++... ... .
T Consensus 123 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~--~ 197 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRI--I 197 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEE--S
T ss_pred EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEE--E
Confidence 987655366666677899999987554333332 33456789999996665555543 3 556666554321 111 1
Q ss_pred ccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270 310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI 344 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~ 344 (764)
.......++.+++++++..|+.+. ..+.|..+++.
T Consensus 198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 122345678999998666666554 45667777754
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.38 E-value=0.0006 Score=70.24 Aligned_cols=248 Identities=12% Similarity=-0.007 Sum_probs=149.1
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
+|+.+. ...|+..++........+. ....+..++|.+.+..|+.+ ...+.|..++++..................+
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 4689999988765554443 45678899999866655555 4567788887764321111222222344567
Q ss_pred eeEEEecCCCEEE-EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270 318 LCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 318 ~~i~~~~~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
..+++.+.+..|+ +-...+.|.+.++........+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-------------------------------------------- 197 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------------------------------------------- 197 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------------------------------------------
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------------------------------------------
Confidence 8899988444444 4445666777665422110000
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECcCCcccceecCcccccccccc
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHN 474 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (764)
. ........++++|.+.+|+.... .+.|...++.......... ..-
T Consensus 198 ---------------------~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~--------~~l 245 (400)
T 3p5b_L 198 ---------------------R---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENI 245 (400)
T ss_dssp ---------------------E---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC--------SSC
T ss_pred ---------------------e---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE--------CCC
Confidence 0 01145788999998777776653 3789999887544333221 233
Q ss_pred CcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEE
Q 004270 475 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 550 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~ 550 (764)
....+|++++++..|..+. ..+.|..+|+............ .....+++ ..+.++.+-...+.|..+|..+++.+
T Consensus 246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCce
Confidence 5678999998777676654 5678999998765544444331 34456666 33445555566788999998888777
Q ss_pred EEeecCCCCeeEEEEc
Q 004270 551 RKFEGHTDRITDFCFS 566 (764)
Q Consensus 551 ~~~~~h~~~i~~l~~s 566 (764)
..+........+++..
T Consensus 325 ~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 325 NLLAENLLSPEDMVLF 340 (400)
T ss_dssp EEEECSCSCEEEEEEE
T ss_pred EEEecCCCCCceEEEE
Confidence 7776554555666543
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=8.4e-05 Score=77.49 Aligned_cols=154 Identities=8% Similarity=0.061 Sum_probs=102.4
Q ss_pred ccEEEEeC-CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcC----C-eEEEEEccCC
Q 004270 140 TPTCIMHP-DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD----G-KIHVHNVRYD 213 (764)
Q Consensus 140 ~~~~~~~p-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~d----g-~i~iwd~~~~ 213 (764)
...++++| +. ..|+++...+.|+.+|..+++...... .......+++++++++|.++... . .+...+. .+
T Consensus 139 P~~lavdp~~~--g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 139 AVWLSFDPKNH--NHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCEEEEETTEE--EEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCEEEECCCCC--CeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 45677888 35 567777666889999987766554444 45668899999999977766542 1 3444443 33
Q ss_pred ceE--EEEeccCCCCEEEEEEee-CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCE-EEEEcCC
Q 004270 214 EEL--VTFTHSMRGAVTALAFSS-DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASAD 289 (764)
Q Consensus 214 ~~~--~~~~~~~~~~v~~l~fs~-d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~d 289 (764)
... ..+.. ......++++| +|. ++++-..++.|..++..++........+.......++|+|++++ .++-...
T Consensus 215 ~~~~~~~l~~--~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 215 GFKVITELTK--GQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp TSCSEEEEEE--CSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred ceeeeeeecc--CCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 322 22322 23467788999 565 77766678899999998776533332122345789999999994 4555567
Q ss_pred CcEEEEEecCC
Q 004270 290 NSIKMWIFDTT 300 (764)
Q Consensus 290 ~~i~vw~~~~~ 300 (764)
+.|..++.+..
T Consensus 292 ~~I~~~~~d~~ 302 (430)
T 3tc9_A 292 HYILRSDYDWK 302 (430)
T ss_dssp TEEEEEEEETT
T ss_pred CEEEEEeCCcc
Confidence 88999887753
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.36 E-value=0.0002 Score=74.62 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=116.2
Q ss_pred CCeEEEEEccCCCEEEEEecCC-----cEEEEECcCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeE
Q 004270 425 TAVKACTISACGNFAVLGTAGG-----WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDI 498 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g-----~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v 498 (764)
.....++++++|+ |+++...+ .+..++...+...... ........+++++| ++.+.++-..++.|
T Consensus 182 ~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~--------~~~~~~P~giavd~~~G~lyv~d~~~~~V 252 (433)
T 4hw6_A 182 GQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLS--------LCNARGAKTCAVHPQNGKIYYTRYHHAMI 252 (433)
T ss_dssp SCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEE--------EEECSSBCCCEECTTTCCEEECBTTCSEE
T ss_pred CCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccc--------ccccCCCCEEEEeCCCCeEEEEECCCCEE
Confidence 5688999999999 55554422 2333333222111000 01233456788999 67766666677899
Q ss_pred EEEECCCCCeeeeE-ecC--cceEEEEEeecCCEEEEE-eCCCeEEEEEcc--CCeE--EEEeecC--------------
Q 004270 499 KVWDFKGRDLKSRW-EVG--CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--ALRM--VRKFEGH-------------- 556 (764)
Q Consensus 499 ~iwd~~~~~~~~~~-~~~--~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~--~~~~--~~~~~~h-------------- 556 (764)
+.++..++.....+ ... .....++++|+++.|.++ ...+.|+.++.. ++.. ...+.+.
T Consensus 253 ~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a 332 (433)
T 4hw6_A 253 SSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGA 332 (433)
T ss_dssp EEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGS
T ss_pred EEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccce
Confidence 99998877663322 222 223469999999955555 456899998865 3321 1222221
Q ss_pred -CCCeeEEEE---------cCCCcEEEEEeCCCcEEEEEcCccceEEEEeeC------------------CceEEEEEcC
Q 004270 557 -TDRITDFCF---------SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD------------------VSITALSLSP 608 (764)
Q Consensus 557 -~~~i~~l~~---------s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~v~~l~~sp 608 (764)
-.....+++ .++|.+.++-...+.|+.++ ++|......... .....|+++|
T Consensus 333 ~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~-~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 333 RLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT-PEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp BCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC-TTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred EEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC-CCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 123567999 77887777777778999998 466443332110 1277899994
Q ss_pred CCCeEEEEEeCCCeEEEEec
Q 004270 609 NMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 609 ~g~~lat~~~d~~~i~lW~~ 628 (764)
....|..+......|+..+.
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEec
Confidence 44445555554445777664
No 286
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.34 E-value=0.00032 Score=72.03 Aligned_cols=243 Identities=12% Similarity=-0.015 Sum_probs=144.7
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEE-cCCCcEEEEEecCCCCCceeeEeccCCCCCC
Q 004270 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (764)
Q Consensus 239 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (764)
+|+.+ ....|+.+++.......... ....+..++|.+.+..|+.+ ...+.|..++.+... ...........+
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~~~~~~p 161 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----VEEVVSTGLESP 161 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC----EEEEECSSCSCC
T ss_pred eeEee-cCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC----cEEEEeCCCCCc
Confidence 34433 34678899987765544443 34467899999766555544 456778777765432 112222233456
Q ss_pred eeEEEecCCCEEE-EEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEee
Q 004270 318 LCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (764)
Q Consensus 318 ~~i~~~~~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (764)
..+++.+.+..|+ +-...+.|.+.++...... .+
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l-------------------------------------------- 196 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------------------------------------------- 196 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EE--------------------------------------------
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-Ee--------------------------------------------
Confidence 7899988555554 4444566666554321100 00
Q ss_pred eCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-C-CcEEEEECcCCcccceecCcccccccccc
Q 004270 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-G-GWIERFNLQSGISRGSYLDMSERSNYAHN 474 (764)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (764)
+ .........++++|.+.+|+.... . +.|..+++.......... ..-
T Consensus 197 --------------------~---~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~--------~~~ 245 (386)
T 3v65_B 197 --------------------L---WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD--------THL 245 (386)
T ss_dssp --------------------E---CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--------SSC
T ss_pred --------------------e---cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE--------CCC
Confidence 0 011245788999988777666654 3 688888886543322221 223
Q ss_pred CcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEE
Q 004270 475 GEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 552 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~ 552 (764)
....+|+++|++..|..+ +..+.|..+++........+... .....+++ ..+.++.+-...+.|..++..+++.+..
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~ 324 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEI 324 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEE
Confidence 457899999876655554 45678999998755443333322 45667777 4455556666778899998777777666
Q ss_pred eecCCCCeeEEEE
Q 004270 553 FEGHTDRITDFCF 565 (764)
Q Consensus 553 ~~~h~~~i~~l~~ 565 (764)
+.........+++
T Consensus 325 i~~~~~~p~gi~v 337 (386)
T 3v65_B 325 IRNKLHFPMDIHT 337 (386)
T ss_dssp EECSCSCCCCEEE
T ss_pred EccCCCCCceEEE
Confidence 6644444555554
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.34 E-value=0.0019 Score=64.57 Aligned_cols=273 Identities=10% Similarity=0.036 Sum_probs=146.3
Q ss_pred CcceEEEEEeCCeEEEEECCe--EEEEec-CceEEE--e--cccccceEEEEEeCCEEEEEecCCcEEEEEccCCccccc
Q 004270 56 PKKIRALASYRDYTFAAYGNH--IAVVKR-AHQVAT--W--SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA 128 (764)
Q Consensus 56 ~~~I~~~~~~~~~~~~a~g~~--i~vw~~-~~~~~~--~--~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~ 128 (764)
...+.+|++.++....+.|.. |....- ++.=.. . ......+.+|.++.+.++.++.+|.|.. ..+.++. ..
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~t-W~ 112 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQS-WS 112 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSS-CE
T ss_pred CCcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCC-ce
Confidence 457899998765443334433 433322 322111 1 1234578888887777777777775443 2233332 11
Q ss_pred ceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 004270 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGKIHV 207 (764)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~sp~~~~la~g~~dg~i~i 207 (764)
.+............+++.+++ .++.++.+|.|..- .+.|+.-... ..+...+..+++.+++.+++++.. |.+..
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~ 187 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNG---SAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYS 187 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETT---EEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEEE
T ss_pred ECccccCCCCCeEEEEEECCC---CEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEEE
Confidence 111100011122344455554 34555556654332 2234333222 345668899999999888877654 44433
Q ss_pred -EEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---cccCeeEEEEecCCCEE
Q 004270 208 -HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPVL 283 (764)
Q Consensus 208 -wd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l 283 (764)
.|- .++.-..+.......+..+.+.+++. ++ .++.+|.+++.+...++.-..+... +...+.++.+.+++..+
T Consensus 188 S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (327)
T 2xbg_A 188 TWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW 264 (327)
T ss_dssp EECT-TCSSCEEEECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred EeCC-CCCceeECCCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE
Confidence 331 13332233333356789999999887 55 4456788887754434433322211 23458899998887766
Q ss_pred EEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEE
Q 004270 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (764)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d 342 (764)
+++. ++.+ .+..+.. .....+.....+...+.++.|.+++ .++.++.+|.+.-++
T Consensus 265 ~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 265 LAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 6554 6666 3333332 2222222112234677889997655 467777888766554
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.34 E-value=0.0013 Score=65.76 Aligned_cols=149 Identities=9% Similarity=0.026 Sum_probs=89.9
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..+..+++.+++.+++++.. |.+..-.-..+..-.... ......+..++++++++.+ .++.+|.+++.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~~-------~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D 233 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWEPHN-------RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPD 233 (327)
T ss_dssp CCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCEEEE-------CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETT
T ss_pred cceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCceeECC-------CCCCCccceeEECCCCCEE-EEeCCceEEEecCC
Confidence 46788899999888877654 444433211122222221 1345678899999988755 45567888776533
Q ss_pred CCCeeeeEe-----cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEee---cCCCCeeEEEEcCCCcEEEEEe
Q 004270 505 GRDLKSRWE-----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 505 ~~~~~~~~~-----~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~s~dg~~l~s~s 576 (764)
.++.-..+. ....+..+++.+++.+++++. ++.+ .+..+.++.-..+. .+...+.++.|.++++ ++.++
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G 310 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG 310 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEEC
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEc
Confidence 333222222 123578888988877777665 5666 34555554444443 2345688999986665 55567
Q ss_pred CCCcEEEEE
Q 004270 577 MDGSLRIWD 585 (764)
Q Consensus 577 ~dg~i~iwd 585 (764)
.+|.|.-++
T Consensus 311 ~~G~i~~~~ 319 (327)
T 2xbg_A 311 QKGILLRYV 319 (327)
T ss_dssp STTEEEEEC
T ss_pred CCceEEEEc
Confidence 789777665
No 289
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.31 E-value=0.00065 Score=69.68 Aligned_cols=184 Identities=9% Similarity=0.006 Sum_probs=115.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCceEEEEeccCCCCEEEEE
Q 004270 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (764)
.|+.+ ....|+.+++...+....... ......++|.+.+..|.... ..+.|..+++........+... ......++
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~gla 165 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLA 165 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-CSCCCCEE
T ss_pred eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-CCCccEEE
Confidence 45555 445689999877665555554 45578999998766666554 5688999998765543333322 34567789
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC--CcEEEEEecCCCCCceeeEe
Q 004270 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 232 fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~i~vw~~~~~~~~~~~~~~ 309 (764)
+.+.+..+.++-...+.|.+.++........+. ........+++.|.+..|+.+... +.|...+++.. ....+
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~-- 240 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRII-- 240 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEE--
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC--CcEEE--
Confidence 987655366666677889999987554333333 334567899999877766655543 45555554432 11221
Q ss_pred ccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270 310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI 344 (764)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~ 344 (764)
.......+..++++|++..|+.+. ..+.|..+++.
T Consensus 241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 123344678999998666666554 45667777653
No 290
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.26 E-value=5.6e-05 Score=85.27 Aligned_cols=190 Identities=8% Similarity=-0.004 Sum_probs=115.6
Q ss_pred CeEEEEEc-cCCCEEEEEecC-C----cEEEEECcCC-cccceecCccccccccccCcEEEEEECCCCCEEEEEeCC---
Q 004270 426 AVKACTIS-ACGNFAVLGTAG-G----WIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--- 495 (764)
Q Consensus 426 ~v~~~~~s-~~g~~l~~g~~~-g----~i~i~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--- 495 (764)
.+...++| |||++++.+... | .|+++|+.++ ..+... -.....+++|+||++.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~----------~~~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK----------VSGTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC----------EEEECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc----------ccCceeeEEEecCCCEEEEEEECCCC
Confidence 67889999 999998876543 3 4999999988 532110 01113468899999888877765
Q ss_pred --CeEEEEECCCCCee--eeEec--CcceEEEEEeecCCEEEEEeC---CCeEEEEEccCC--eE-EEEe-ecCCCCeeE
Q 004270 496 --GDIKVWDFKGRDLK--SRWEV--GCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVAL--RM-VRKF-EGHTDRITD 562 (764)
Q Consensus 496 --g~v~iwd~~~~~~~--~~~~~--~~~i~~~~~s~~~~~la~~~~---d~~i~v~d~~~~--~~-~~~~-~~h~~~i~~ 562 (764)
..|..+++.+++.. ..+.. ......+.|||||++|+..+. ...|+++|+.++ +. +..+ .+..+...+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 36888888876432 22222 234567899999999887763 447888999875 23 1333 334455556
Q ss_pred EEEcCCCcEEEEEeCC----CcEEEEEcCcc-ceEE-EEeeCCc--eEEEEEcCCCCeEEE-EEeCCCeEEEEec
Q 004270 563 FCFSEDGKWLLSSGMD----GSLRIWDVILA-RQID-AIHVDVS--ITALSLSPNMDVLAT-AHVDQNGVYLWVN 628 (764)
Q Consensus 563 l~~s~dg~~l~s~s~d----g~i~iwd~~~~-~~~~-~~~~~~~--v~~l~~sp~g~~lat-~~~d~~~i~lW~~ 628 (764)
+.|+.++.+++.+..+ ..|..+|+.++ +... .+..... +.++.+. +..|+. ...++ ...||-.
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g-~~~l~~~ 396 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAG-LTRIWTM 396 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETT-EEEEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCC-EEEEEEE
Confidence 6655444444554443 35777777653 3223 3333332 4555554 455544 44455 3444443
No 291
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.25 E-value=0.00013 Score=82.36 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=69.7
Q ss_pred CEEEEEEe-eCCCCEEEEEeCCC----cEEEEECCCc-eeeeeeecccccCeeEEEEecCCCEEEEEcCCC-----cEEE
Q 004270 226 AVTALAFS-SDGQPLLASGASSG----VISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADN-----SIKM 294 (764)
Q Consensus 226 ~v~~l~fs-~d~~~~l~sg~~dg----~i~iwd~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~i~v 294 (764)
.+...+|| |||+.++++.+.+| .|+++|+.++ +.+.... ......+.|+||++.|+....|. .|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99994444444443 4999999998 6432111 12245789999999888776652 3555
Q ss_pred EEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeCC---CcEEEEEeec
Q 004270 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQ 345 (764)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~i~d~~~ 345 (764)
+++.+.......+... .+......+.|+|||++|+..+.+ ..|.++|+.+
T Consensus 252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 5544332111222221 222345678899999988866532 3355555543
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.24 E-value=0.0036 Score=64.38 Aligned_cols=185 Identities=9% Similarity=-0.022 Sum_probs=117.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCc---eEEEEeccCCCCEE
Q 004270 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDE---ELVTFTHSMRGAVT 228 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~---~~~~~~~~~~~~v~ 228 (764)
.|+.+. ...|+..++........+.. ...+..++|++....|.... ..+.|..+++.... ....+.........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 455554 46799999887665555544 56788999999777666654 46889889886521 22233332245688
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC--CCcEEEEEecCCCCCcee
Q 004270 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRL 306 (764)
Q Consensus 229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~ 306 (764)
.+++.+.+..+.++-...+.|.+.+++.......+. ........+++.|.+..|+.+.. .+.|...+++... ...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--~~~ 239 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYS 239 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--CEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--cEE
Confidence 999998555366666678899999987665444443 34456789999997666665543 3566666655331 111
Q ss_pred eEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270 307 LRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI 344 (764)
Q Consensus 307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~ 344 (764)
+ ....-..+..+++++++..|+.+. ..+.|..+++.
T Consensus 240 ~--~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 240 L--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp E--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred E--EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 1 223345788999998777776664 45667777753
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.24 E-value=0.00025 Score=69.41 Aligned_cols=150 Identities=19% Similarity=0.296 Sum_probs=104.4
Q ss_pred CCcEEEEECc--CCcccceecCcccccccccc-CcEEEEEE--CCC-CC-EEEEEeCCCeEEEEECC-------CCCeee
Q 004270 445 GGWIERFNLQ--SGISRGSYLDMSERSNYAHN-GEVVGVAC--DST-NT-LMISAGYHGDIKVWDFK-------GRDLKS 510 (764)
Q Consensus 445 ~g~i~i~~~~--~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~-~~-~l~s~~~dg~v~iwd~~-------~~~~~~ 510 (764)
+++|.+|++. ++. +......... .... ..+.++++ ++. ++ +++....+|.+..|++. +.+.++
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~p--v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR 174 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHP--IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR 174 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSC--EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccC--cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE
Confidence 4689999773 332 2222110000 0011 55667777 774 44 67888889999999983 346778
Q ss_pred eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc-----CCeEEEEee-cC-CCCeeEEEE--cCCCc-EEEEEe-CCC
Q 004270 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV-----ALRMVRKFE-GH-TDRITDFCF--SEDGK-WLLSSG-MDG 579 (764)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~-----~~~~~~~~~-~h-~~~i~~l~~--s~dg~-~l~s~s-~dg 579 (764)
++.....+..+...+....|.++-++..|..++.+ +++.+..+. +| ...+..|++ .++++ ||++++ .+.
T Consensus 175 ~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 175 AFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred EecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 88888999999999999999999999888888865 456676653 23 246888888 56666 666666 677
Q ss_pred cEEEEEcC-ccceEEEEee
Q 004270 580 SLRIWDVI-LARQIDAIHV 597 (764)
Q Consensus 580 ~i~iwd~~-~~~~~~~~~~ 597 (764)
+..+||.. +.+.+..|..
T Consensus 255 s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 255 SYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp EEEEEESSTTCCEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEEe
Confidence 99999997 6777877763
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.22 E-value=0.00062 Score=67.53 Aligned_cols=238 Identities=9% Similarity=-0.045 Sum_probs=141.9
Q ss_pred EEEEEEcCCeEEEEEccCCc-eEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeE
Q 004270 195 VVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273 (764)
Q Consensus 195 ~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~ 273 (764)
+|+.+. ...|+..++.... ........ ...+.+++|.+.+..+..+-...+.|..+++..+.....+....-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 444443 4678999998664 12112111 24577999998655366666677899999987764322222123345778
Q ss_pred EEEecCCC-EEEEEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEEeC--CCcEEEEEeecccccc
Q 004270 274 LHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ--DRAFRLFSVIQDQQSR 350 (764)
Q Consensus 274 l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~--dg~i~i~d~~~~~~~~ 350 (764)
+++.+.+. +.++-...+.|.+++.+... .+.+ .......+..+++.|.+..|+.+.. .+.|...++.... ..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~ 158 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RF 158 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCc--EEEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eE
Confidence 99987544 55555567788888776431 1222 2234456789999986656665542 3555555432111 00
Q ss_pred cccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEE
Q 004270 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (764)
.+ .. ..-.....+
T Consensus 159 ~~----------------------------------------------------------------~~---~~l~~Pngl 171 (318)
T 3sov_A 159 II----------------------------------------------------------------IN---SEIYWPNGL 171 (318)
T ss_dssp EE----------------------------------------------------------------EC---SSCSCEEEE
T ss_pred EE----------------------------------------------------------------EE---CCCCCccEE
Confidence 00 00 011456889
Q ss_pred EEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCee
Q 004270 431 TISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 509 (764)
Q Consensus 431 ~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 509 (764)
++++++..|+.+. ..+.|..+++.... ...+. ........++++.. +..+++-...+.|..++..+++..
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~-------~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVV-------KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-------CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEe-------cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 9999777776665 45789999987433 23222 12334567788763 355566666788999998888776
Q ss_pred eeEecC
Q 004270 510 SRWEVG 515 (764)
Q Consensus 510 ~~~~~~ 515 (764)
..+...
T Consensus 243 ~~i~~~ 248 (318)
T 3sov_A 243 REIHSD 248 (318)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 665543
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.21 E-value=0.001 Score=66.01 Aligned_cols=240 Identities=10% Similarity=0.020 Sum_probs=141.5
Q ss_pred CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEec
Q 004270 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (764)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (764)
...|+..++........+.......+.+++|.+.+..|+ +-...+.|..++.+........+ ......+..+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~---~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---VSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---EECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---cCCCCCccEEEEEc
Confidence 468999999876422222112334577899998655454 44556778888766542211122 12234577899987
Q ss_pred CCCEE-EEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceEE
Q 004270 325 NGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (764)
Q Consensus 325 ~~~~l-~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (764)
.+..| ++-...+.|.++++..... ..+
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~-~~l--------------------------------------------------- 116 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLR-KVL--------------------------------------------------- 116 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC-EEE---------------------------------------------------
T ss_pred CCCeEEEEECCCCEEEEEECCCCcE-EEE---------------------------------------------------
Confidence 44444 4444566777777542211 000
Q ss_pred EEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECcCCcccceecCccccccccccCcEEEEE
Q 004270 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481 (764)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 481 (764)
. .........+++.|.+.+++.... .+.|..+++..... ..+. ...-....+|+
T Consensus 117 -------------~---~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~-------~~~l~~Pngla 172 (318)
T 3sov_A 117 -------------F---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII-------NSEIYWPNGLT 172 (318)
T ss_dssp -------------E---CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEE-------CSSCSCEEEEE
T ss_pred -------------E---eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEE-------ECCCCCccEEE
Confidence 0 011255788999998777777663 57888888864332 2221 12234568999
Q ss_pred ECCCCCEEEEE-eCCCeEEEEECCCCCeeeeEe-cCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecCCCC
Q 004270 482 CDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR 559 (764)
Q Consensus 482 ~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h~~~ 559 (764)
+++++..|..+ +..+.|..+|+.......... .......+++. .+.++.+-...+.|..++..+++....+......
T Consensus 173 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~ 251 (318)
T 3sov_A 173 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHSDIFS 251 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECCCSS
T ss_pred EeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeCCCCC
Confidence 99976666555 456789999987544333333 12455667764 3445555556788999998888766666544334
Q ss_pred eeEEEE
Q 004270 560 ITDFCF 565 (764)
Q Consensus 560 i~~l~~ 565 (764)
..+++.
T Consensus 252 P~~i~v 257 (318)
T 3sov_A 252 PMDIHA 257 (318)
T ss_dssp CCCEEE
T ss_pred CcEEEE
Confidence 445544
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.14 E-value=0.0063 Score=58.31 Aligned_cols=267 Identities=15% Similarity=0.175 Sum_probs=161.7
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (764)
+.+|.|.|+.++..+.+-.- .--+.-.+|..+.||.-. ...+.|+|+++.+.+..+... ..|.-=.|-.+..
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~--e~VvfWkWis~~~-- 119 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLNT-- 119 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS--SCEEEEEECSSSE--
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC--CccEEEEecCCCe--
Confidence 34788999987655433221 112344689888888776 588999999999999998874 5788778876664
Q ss_pred EEEEeCCCcEEEEECCCc-eeeeeeeccc----ccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCceee
Q 004270 240 LASGASSGVISIWNLEKR-RLQSVIREAH----DNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~~~~ 307 (764)
|+.-+ +..|+-|+++.. .+.+.+. -| ...|..-..+++.++++..|- .|.+.+|..+.. ..
T Consensus 120 L~lVT-~taVyHWs~~~~s~P~kvFd-R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~s 192 (365)
T 2xzh_A 120 VALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VS 192 (365)
T ss_dssp EEEEE-SSEEEEEESSTTCCCEEEEE-CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EE
T ss_pred EEEEc-CCcEEEEcccCCCCCceeee-cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-----cc
Confidence 44444 468999999753 4444544 33 346777777888887765542 367788876653 45
Q ss_pred EeccCCCCCCeeEEEecC---CCEEEEEeC---CCcEEEEEeeccc-ccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 308 RFRSGHSAPPLCIRFYAN---GRHILSAGQ---DRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~---~~~l~s~~~---dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
+.+.||...-..+....+ .+.++.+.. .+.+++.++.... ....+...
T Consensus 193 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk------------------------- 247 (365)
T 2xzh_A 193 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK------------------------- 247 (365)
T ss_dssp EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCE-------------------------
T ss_pred ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccc-------------------------
Confidence 566677553333222211 112332222 2467777663321 11000000
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
....+-+.....+-..++.+|+.-..+.+-+.-|.+++||+.++..+.
T Consensus 248 --------------------------------~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 248 --------------------------------AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp --------------------------------EEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred --------------------------------cceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 011122223345677889999999999999999999999999998876
Q ss_pred eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 506 (764)
.-. -....|..-+.+....-++.....|.|.--.++..
T Consensus 296 ~nr--------IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 MNR--------ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEE--------CCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred Eec--------cCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 543 23334443343333334555555665555444443
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.13 E-value=0.00057 Score=66.93 Aligned_cols=183 Identities=9% Similarity=0.128 Sum_probs=123.2
Q ss_pred CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC----CC---EEEEEe-C--CCeEEEEECC
Q 004270 435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST----NT---LMISAG-Y--HGDIKVWDFK 504 (764)
Q Consensus 435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~---~l~s~~-~--dg~v~iwd~~ 504 (764)
....++.....+-+.+||+ +|+.+..+. . +.+..+.+-|+ |+ ++++.. . +++|.+|++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~--------~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN--------T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC--------C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc--------C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 4456666667789999999 787777663 1 44555555442 22 223333 4 5789999774
Q ss_pred --CCCeeeeEe-------cC-cceEEEEE--eec-CC-EEEEEeCCCeEEEEEc-------cCCeEEEEeecCCCCeeEE
Q 004270 505 --GRDLKSRWE-------VG-CSLVKIVY--HRV-NG-LLATVADDLVIRLFDV-------VALRMVRKFEGHTDRITDF 563 (764)
Q Consensus 505 --~~~~~~~~~-------~~-~~i~~~~~--s~~-~~-~la~~~~d~~i~v~d~-------~~~~~~~~~~~h~~~i~~l 563 (764)
+++ +..+. .. ..+..+|+ ++. ++ ++++...+|.+..|++ .+.+.+++|.-. +.+..+
T Consensus 108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~Egc 185 (355)
T 3amr_A 108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGM 185 (355)
T ss_dssp TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEE
T ss_pred CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceE
Confidence 333 33331 12 45666777 564 43 6778888999999988 345778888754 568889
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcC-----ccceEEEEeeC---CceEEEEE--cCCCC-eEEEEEeCCCeEEEEeccc
Q 004270 564 CFSEDGKWLLSSGMDGSLRIWDVI-----LARQIDAIHVD---VSITALSL--SPNMD-VLATAHVDQNGVYLWVNRC 630 (764)
Q Consensus 564 ~~s~dg~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~~---~~v~~l~~--sp~g~-~lat~~~d~~~i~lW~~~~ 630 (764)
...+....|..+-+|.-|..++.. +++++..+... ..+..|++ .++|+ ||++++....++.+|+.+.
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 999888899999998666666644 35566665433 45888888 56666 7888886666899999863
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.06 E-value=0.0034 Score=70.12 Aligned_cols=240 Identities=12% Similarity=0.005 Sum_probs=141.9
Q ss_pred CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEE-EEcCCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
....|+..++........+. ....+.+++|.+.+..|+ +-...+.|+.++++..................+..|++.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 34678888887665544443 455678999998655444 445567788887764321111222233345667889999
Q ss_pred cCCCEEEEE-eCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270 324 ANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (764)
Q Consensus 324 ~~~~~l~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
+.++.|+.+ ...+.|.+.++..... ..+.
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~------------------------------------------------- 509 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKR-KTLF------------------------------------------------- 509 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSE-EEEE-------------------------------------------------
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeE-EEEE-------------------------------------------------
Confidence 876555544 4567777777642211 0000
Q ss_pred EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-C-CcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-G-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480 (764)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 480 (764)
. ........++++|.+.+|+.... . +.|.+.++.......... ..-....+|
T Consensus 510 ---------------~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~--------~~l~~P~GL 563 (791)
T 3m0c_C 510 ---------------R---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--------ENIQWPNGI 563 (791)
T ss_dssp ---------------E---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC--------SSCSCEEEE
T ss_pred ---------------e---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe--------CCCCCceEE
Confidence 0 11145789999998777776653 2 689999887544333221 333578899
Q ss_pred EECCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEE-eCCCeEEEEEccCCeEEEEeec
Q 004270 481 ACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEG 555 (764)
Q Consensus 481 ~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~~~~~~~~~~~ 555 (764)
++++.+..|+.+. ..+.|...++........+... .....+++ .+..|+.+ ...+.|...|..+++.+..+..
T Consensus 564 avD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 564 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 9998776666554 5578999998766555444432 23345555 34444444 4567888888777766666654
Q ss_pred CCCCeeEEE
Q 004270 556 HTDRITDFC 564 (764)
Q Consensus 556 h~~~i~~l~ 564 (764)
.......|+
T Consensus 642 ~l~~P~~i~ 650 (791)
T 3m0c_C 642 NLLSPEDMV 650 (791)
T ss_dssp SCSCCCCEE
T ss_pred CCCCceeEe
Confidence 333334444
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.03 E-value=0.011 Score=56.73 Aligned_cols=280 Identities=12% Similarity=0.181 Sum_probs=159.9
Q ss_pred eeeeeecCCCcceEEecCCeEEEEEEe----CCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEE--ECCeEEEEe
Q 004270 8 KAIGYITSSVPFSVQRLGTENFVTVSV----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAA--YGNHIAVVK 81 (764)
Q Consensus 8 r~~g~~~~~v~~~~~~~~~~~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a--~g~~i~vw~ 81 (764)
..+|.....+.|...+..++.+++.-. +.++.|-|+.+.+.+...+- .--+.-++|....+| .|..+.+++
T Consensus 17 ~~lGI~~~~i~f~~lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALrag~~LQiFn 93 (365)
T 2xzh_A 17 QNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKAGKTLQIFN 93 (365)
T ss_dssp GGGTCCGGGCSTTTEEEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEETTEEEEEE
T ss_pred hhcCCCccccccceeeeecCceEEEEecCCCCCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEecCCeEEEec
Confidence 345554455566544444333444333 34788889888554322211 111233567655444 477799999
Q ss_pred cCce--EEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCC----ccccEEEEeCCCCCCEE
Q 004270 82 RAHQ--VATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD----KFTPTCIMHPDTYLNKV 154 (764)
Q Consensus 82 ~~~~--~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~l 154 (764)
...+ ++...- ...|.-..| +.+.|+-.+ +..|..|++.+... |.+-++.+. ..+..-..+++. +++
T Consensus 94 letK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~---P~kvFdR~~~L~~~QIInY~~d~~~--kW~ 166 (365)
T 2xzh_A 94 IEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQ--KWL 166 (365)
T ss_dssp TTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCC---CEEEEECCGGGTTCEEEEEEECTTS--CEE
T ss_pred hHHhhhhcceec-CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCC---CceeeecchhcccceEEEEEECCCC--CEE
Confidence 7543 333332 345666666 667777776 77899999976332 344444332 233333455555 554
Q ss_pred EEEe-------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC---CCEEEEEEcC---CeEEEEEccCC---c----
Q 004270 155 IVGS-------QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA---LDVVAVGCSD---GKIHVHNVRYD---E---- 214 (764)
Q Consensus 155 ~~~~-------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~---~~~la~g~~d---g~i~iwd~~~~---~---- 214 (764)
+..+ -.|.+++|..+ .+.-+.++||...-..+.+.-+ ..+++.+... +.++|-++... .
T Consensus 167 ~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~ 245 (365)
T 2xzh_A 167 LLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 245 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC
T ss_pred EEEeEeccCCccceeEEEEeec-ccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc
Confidence 4432 23789999974 4566778888554433322211 1244444332 58888888543 1
Q ss_pred -eEEEEecc---CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC
Q 004270 215 -ELVTFTHS---MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN 290 (764)
Q Consensus 215 -~~~~~~~~---~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 290 (764)
....+... ..+-..++..++.-. ++..-+.-|.|.+||++++.++..-+ -....|..-+...+..-++.....|
T Consensus 246 kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~~nr-IS~d~iF~ta~~~~~~Gi~~Vnr~G 323 (365)
T 2xzh_A 246 KKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKG 323 (365)
T ss_dssp CEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTC
T ss_pred cccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEEEec-cCCCceEEecccCCCCcEEEEcCCC
Confidence 11111111 123455677776655 78888899999999999999988877 4455665555555544566666677
Q ss_pred cEEEEEecCC
Q 004270 291 SIKMWIFDTT 300 (764)
Q Consensus 291 ~i~vw~~~~~ 300 (764)
.|.--.++..
T Consensus 324 qVl~v~v~~~ 333 (365)
T 2xzh_A 324 QVLSVCVEEE 333 (365)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEECcc
Confidence 6665555443
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.0027 Score=66.03 Aligned_cols=231 Identities=8% Similarity=0.024 Sum_probs=139.5
Q ss_pred ccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEE-------ccCCCEEEEEecCC-------cEEEEECc
Q 004270 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI-------SACGNFAVLGTAGG-------WIERFNLQ 454 (764)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~g~~l~~g~~~g-------~i~i~~~~ 454 (764)
...++.+......+++.|.....+... .............++| +++|++|+++...+ .|.+++..
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~ 229 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence 345777777777888888887655332 2221123346899999 99999777776654 26666644
Q ss_pred C-Cccc-----ceecCccccccccccCcEEEEEECCC-CCEEEEEeCCCeEEEEECC-------CCCe-----------e
Q 004270 455 S-GISR-----GSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK-------GRDL-----------K 509 (764)
Q Consensus 455 ~-~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~-------~~~~-----------~ 509 (764)
. +... ..+. -.....+++++|+ +.++++-..++.|..+|+. ++.. .
T Consensus 230 ~~G~~~~~~~~~~v~---------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 230 ADGTFDDRSDIQLIA---------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp TTSCCSTTSCEEEEE---------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred CCCceeecccceeec---------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 3 2221 1111 1123457789995 5555566678889999987 5553 1
Q ss_pred ee-Eec--CcceEEEEEeecCCEEEEE-eCCCeEEEEEcc--CCeE--EEEeecC---C------------CCee-EEEE
Q 004270 510 SR-WEV--GCSLVKIVYHRVNGLLATV-ADDLVIRLFDVV--ALRM--VRKFEGH---T------------DRIT-DFCF 565 (764)
Q Consensus 510 ~~-~~~--~~~i~~~~~s~~~~~la~~-~~d~~i~v~d~~--~~~~--~~~~~~h---~------------~~i~-~l~~ 565 (764)
.. +.. ......++++|+|++|.++ +..+.|+.++.. ++.. ...+.+. . .... .++.
T Consensus 301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v 380 (496)
T 3kya_A 301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV 380 (496)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence 11 222 2456799999999965554 567899996654 3322 1222221 1 1233 3444
Q ss_pred c-------CCCcEEEEEeCCCcEEEEEcCccceEEEEeeC-------------------------CceEEEEEcCCCCeE
Q 004270 566 S-------EDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-------------------------VSITALSLSPNMDVL 613 (764)
Q Consensus 566 s-------~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------------------~~v~~l~~sp~g~~l 613 (764)
. ++|.+.++=...+.|+.++ ++|. +.++.+. .....|++++++..|
T Consensus 381 d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~l 458 (496)
T 3kya_A 381 KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMF 458 (496)
T ss_dssp ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEE
T ss_pred ccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEE
Confidence 4 4666666666788999998 5674 4444321 126789999874455
Q ss_pred EEEEeCCCeEEEEecccc
Q 004270 614 ATAHVDQNGVYLWVNRCM 631 (764)
Q Consensus 614 at~~~d~~~i~lW~~~~~ 631 (764)
..+......|+.++++..
T Consensus 459 yVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 459 YVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEETTTTEEEEEEECCC
T ss_pred EEEeCCCCEEEEEECCCC
Confidence 566655556887776543
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.98 E-value=0.014 Score=58.20 Aligned_cols=268 Identities=15% Similarity=0.177 Sum_probs=166.0
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (764)
+.+|.|.|+.++..+.+-.- .--+.-.+|..+.||.-. ...+.|+|+++...+..+... ..|.-=.|-.+..
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~--e~VvfWkWis~~~-- 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLNT-- 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS--SCCCEEEEEETTE--
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC--CCceEEEecCCCe--
Confidence 34788999887654432221 112455788888888766 689999999999999998874 4677777777664
Q ss_pred EEEEeCCCcEEEEECCCc-eeeeeeeccc----ccCeeEEEEecCCCEEEEEcC-------CCcEEEEEecCCCCCceee
Q 004270 240 LASGASSGVISIWNLEKR-RLQSVIREAH----DNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~~~-------d~~i~vw~~~~~~~~~~~~ 307 (764)
|+..+ +..|+-|++... .+.+.+. -| ...|..-..++++++++..|- .|.+.+|..+.. ..
T Consensus 119 l~lVT-~taVyHWsi~~~s~P~kvFd-R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~s 191 (494)
T 1bpo_A 119 VALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VS 191 (494)
T ss_dssp EEEEC-SSEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CE
T ss_pred EEEEc-CCeeEEecccCCCCchhhee-cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----cc
Confidence 44444 568999999753 4444554 33 346777777888887775442 367788877654 45
Q ss_pred EeccCCCCCCeeEEEecCC---CEEEEEeCC---CcEEEEEeeccc-ccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 308 RFRSGHSAPPLCIRFYANG---RHILSAGQD---RAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~---~~l~s~~~d---g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
+.+.||...-..+....+. ..++.+... +.+++.++.... ....+...
T Consensus 192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk------------------------- 246 (494)
T 1bpo_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK------------------------- 246 (494)
T ss_dssp EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE-------------------------
T ss_pred chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce-------------------------
Confidence 5567776544433332211 233333332 567777764321 10000000
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
....+-+......-..++.+|+.-..+.+-+.-|.+++||+.++..+.
T Consensus 247 --------------------------------~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 247 --------------------------------AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp --------------------------------EEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred --------------------------------eeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 011122223344677889999999999999999999999999998876
Q ss_pred eecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 507 (764)
.-. -....|..-+.+....-++.....|.|.--.++...
T Consensus 295 ~nr--------Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 295 MNR--------ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEE--------CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred eec--------ccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 543 334445444444444455555566666555555443
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.94 E-value=0.018 Score=57.52 Aligned_cols=281 Identities=12% Similarity=0.178 Sum_probs=166.2
Q ss_pred ceeeeeecCCCcceEEecCCeEEEEEEe----CCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEE--ECCeEEEE
Q 004270 7 YKAIGYITSSVPFSVQRLGTENFVTVSV----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAA--YGNHIAVV 80 (764)
Q Consensus 7 ~r~~g~~~~~v~~~~~~~~~~~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a--~g~~i~vw 80 (764)
+..+|.....+.|...+..++.+++.-. +.++.|-|..+...+...+- .--+.-++|....+| .|..+.+|
T Consensus 15 L~~lGi~~~~i~f~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALrag~~lQiF 91 (494)
T 1bpo_A 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKAGKTLQIF 91 (494)
T ss_dssp GGGGTCCTTSCSTTTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEETTEEEEE
T ss_pred hhhcCCCccccccceeeeecCceEEEEecCCCCCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEecCCeEEEE
Confidence 3445665566666654444444444433 35789999988554322211 111233556544433 47789999
Q ss_pred ecCc--eEEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEecCC----ccccEEEEeCCCCCCE
Q 004270 81 KRAH--QVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD----KFTPTCIMHPDTYLNK 153 (764)
Q Consensus 81 ~~~~--~~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~ 153 (764)
+... +++...-. ..|.-..| +.+.|+-.+ +..|..|++.+... |.+-++.+. ..+..-..+++. ++
T Consensus 92 nle~K~klks~~~~-e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~---P~kvFdR~~~L~~~QIInY~~d~~~--kW 164 (494)
T 1bpo_A 92 NIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQ--KW 164 (494)
T ss_dssp ETTTTEEEEEEECS-SCCCEEEEEETTEEEEEC-SSEEEEEESSSSCC---CEEEEECCGGGTTCEEEEEEECTTS--SE
T ss_pred chHHhhhhcceecC-CCceEEEecCCCeEEEEc-CCeeEEecccCCCC---chhheecchhcccceEEEEEECCCC--Ce
Confidence 9754 34443333 35655565 677777776 77899999976332 344444333 333333455655 55
Q ss_pred EEEEe-------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCC---CCEEEEEEcC---CeEEEEEccCC-------
Q 004270 154 VIVGS-------QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA---LDVVAVGCSD---GKIHVHNVRYD------- 213 (764)
Q Consensus 154 l~~~~-------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~---~~~la~g~~d---g~i~iwd~~~~------- 213 (764)
++..+ -.|.+++|..+ .+.-+.+.||.+....+...-+ ..+++.+... +.++|-++...
T Consensus 165 ~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 165 LLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp EEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred EEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 55332 24789999974 4566778888655444333221 1245555443 78999988543
Q ss_pred -ceEEEEecc---CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC
Q 004270 214 -EELVTFTHS---MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (764)
Q Consensus 214 -~~~~~~~~~---~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 289 (764)
+....+... ..+-..++..++.-. ++..-+.-|.|.+||++++.++..-+ -....|...+......-++.....
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~ 321 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRK 321 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETT
T ss_pred cceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeec-ccCCceEEecccCCCCcEEEEccC
Confidence 111111111 123456777777666 78888899999999999999988877 455566666665555566666677
Q ss_pred CcEEEEEecCC
Q 004270 290 NSIKMWIFDTT 300 (764)
Q Consensus 290 ~~i~vw~~~~~ 300 (764)
|.|.--.++..
T Consensus 322 GqVl~v~v~e~ 332 (494)
T 1bpo_A 322 GQVLSVCVEEE 332 (494)
T ss_dssp CEEEEEEECTT
T ss_pred ceEEEEEEccc
Confidence 76665555543
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=0.0092 Score=62.09 Aligned_cols=158 Identities=8% Similarity=0.029 Sum_probs=96.0
Q ss_pred CeEEEEEcCC-CCEEEEEEc-CCeEEEEEccCCceEEEEeccC--CCCEEEEEE-------eeCCCCEEEEEeCCC----
Q 004270 183 SISSCVSSPA-LDVVAVGCS-DGKIHVHNVRYDEELVTFTHSM--RGAVTALAF-------SSDGQPLLASGASSG---- 247 (764)
Q Consensus 183 ~i~~~~~sp~-~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~f-------s~d~~~~l~sg~~dg---- 247 (764)
....|+|+|. ...|.++.. .+.|++.|++++.......... ......++| +++|. .|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-YMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-EEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC-EEEEEeCCCCCcc
Confidence 4678999993 555555444 4678889988766554443321 235899999 99998 455554433
Q ss_pred ---cEEEEECCC-ceee-----eeeecccccCeeEEEEecC-CCEEEEEcCCCcEEEEEec-------CCCC-C------
Q 004270 248 ---VISIWNLEK-RRLQ-----SVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFD-------TTDG-D------ 303 (764)
Q Consensus 248 ---~i~iwd~~~-~~~~-----~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~i~vw~~~-------~~~~-~------ 303 (764)
.|.+++... +... ..+. -......++++|+ +.++++-..++.|..++++ .... .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 266776444 2322 1222 1224567888995 4555566677889999887 3322 0
Q ss_pred ---ceeeEeccCCCCCCeeEEEecCCCEEEEE-eCCCcEEEEEee
Q 004270 304 ---PRLLRFRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVI 344 (764)
Q Consensus 304 ---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~i~d~~ 344 (764)
...+.. .+.......++|+|+|+.|+.+ ...+.|+.++..
T Consensus 297 ~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 297 PNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 011111 2334567899999999965554 456777776654
No 304
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.90 E-value=0.0096 Score=66.54 Aligned_cols=185 Identities=9% Similarity=-0.017 Sum_probs=114.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccCCc---eEEEEeccCCCCEE
Q 004270 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDE---ELVTFTHSMRGAVT 228 (764)
Q Consensus 153 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~~~---~~~~~~~~~~~~v~ 228 (764)
.|+.+ ....|+..++...+....... ...+..+++.+....|.... ..+.|+.+++.... ....+.........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44444 445688888876655554444 56678999999666665554 45788888887421 12222222245677
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC--CcEEEEEecCCCCCcee
Q 004270 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD--NSIKMWIFDTTDGDPRL 306 (764)
Q Consensus 229 ~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~i~vw~~~~~~~~~~~ 306 (764)
.|++.+.+..+.++-...+.|.+.++........+. ........|++.|.+..|+.+... +.|.+.+++.. . +
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--~-~- 549 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--D-I- 549 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--C-E-
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--c-e-
Confidence 899998776467777778899999987654433333 344568899999986666665532 55666655432 1 1
Q ss_pred eEeccCCCCCCeeEEEecCCCEEEEEe-CCCcEEEEEee
Q 004270 307 LRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVI 344 (764)
Q Consensus 307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~i~d~~ 344 (764)
..........+..|++.+.+..|+.+. ..+.|..+++.
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 122223346788999998666666654 34566666653
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.88 E-value=0.0058 Score=61.58 Aligned_cols=190 Identities=10% Similarity=0.022 Sum_probs=102.6
Q ss_pred CCeEEEEEccC---CCEEEEEecC------CcEEEEECcCCccc--cee-cCccccccccccCcEEEEEECCCCCEEEEE
Q 004270 425 TAVKACTISAC---GNFAVLGTAG------GWIERFNLQSGISR--GSY-LDMSERSNYAHNGEVVGVACDSTNTLMISA 492 (764)
Q Consensus 425 ~~v~~~~~s~~---g~~l~~g~~~------g~i~i~~~~~~~~~--~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 492 (764)
.....++++|+ +..+++.... +.|..|+...+... ..+ ..........|. ...++|+|+|.+.++.
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT 152 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence 56788999998 5666655442 67888887643211 111 100000011233 3589999999877765
Q ss_pred eCC-------------CeEEEEECCCC------------CeeeeEe-cCcceEEEEEee-cCCEEEEEeCCCeE------
Q 004270 493 GYH-------------GDIKVWDFKGR------------DLKSRWE-VGCSLVKIVYHR-VNGLLATVADDLVI------ 539 (764)
Q Consensus 493 ~~d-------------g~v~iwd~~~~------------~~~~~~~-~~~~i~~~~~s~-~~~~la~~~~d~~i------ 539 (764)
+.. |.|.-++.... .....+. .......++|+| ++.++++-.....+
T Consensus 153 G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d 232 (352)
T 2ism_A 153 GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHD 232 (352)
T ss_dssp CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCC
T ss_pred CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence 421 45555555431 1111222 224467789999 56655554333331
Q ss_pred EEEEccCCe------------------EEEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccce-------EEE
Q 004270 540 RLFDVVALR------------------MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-------IDA 594 (764)
Q Consensus 540 ~v~d~~~~~------------------~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~-------~~~ 594 (764)
.|.-+..+. ++..+. +......++| .+|.++++.-..+.|...++..... ...
T Consensus 233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 310 (352)
T 2ism_A 233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA 310 (352)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee
Confidence 122222221 222332 2234567888 4777777666677788877764431 122
Q ss_pred EeeCCceEEEEEcCCCCeEEEEEe
Q 004270 595 IHVDVSITALSLSPNMDVLATAHV 618 (764)
Q Consensus 595 ~~~~~~v~~l~~sp~g~~lat~~~ 618 (764)
+.....+..+++.|||.++++...
T Consensus 311 ~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 311 LSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EESSCCEEEEEECTTSCEEEEECS
T ss_pred cccCCCeeEEEECCCCcEEEEEeC
Confidence 222345899999999987777643
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.81 E-value=0.00013 Score=81.14 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=136.6
Q ss_pred CCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc-CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEe
Q 004270 245 SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (764)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (764)
..+.|+..++.+......+. ....+..++|.+.+..|+.+. ..+.|+.++++..................+..+++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 34678888888776655444 234567899998776666554 457888888764110001111111222345678887
Q ss_pred cC-CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchhhhhccCceeEeeecccccccccceeEeeeCCceE
Q 004270 324 AN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (764)
Q Consensus 324 ~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (764)
+. ++++++-...+.|.++++........+
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-------------------------------------------------- 491 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------------------------------------------------- 491 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEEC--------------------------------------------------
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEE--------------------------------------------------
Confidence 64 444444445667777775432110000
Q ss_pred EEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECcCCcccceecCccccccccccCcEEEE
Q 004270 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480 (764)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 480 (764)
. ........++++|.+.+|+.... .+.|.++++..... ..+. ...-....+|
T Consensus 492 ---------------~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~-------~~~l~~PnGl 545 (699)
T 1n7d_A 492 ---------------R---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV-------TENIQWPNGI 545 (699)
T ss_dssp ---------------C---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEES-------CSSCSSCCCE
T ss_pred ---------------e---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEE-------eCCCCCccEE
Confidence 0 00133456788887666655543 26788877754322 2221 0122345789
Q ss_pred EECCCCCEE-EEEeCCCeEEEEECCCCCeeeeEecC---cceEEEEEeecCCEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 004270 481 ACDSTNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (764)
Q Consensus 481 ~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~h 556 (764)
++++++..| ++-+..+.|..+++........+... .....+++.. +.++++....+.|..++..+++.+..+...
T Consensus 546 avd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~~i~~~ 624 (699)
T 1n7d_A 546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAEN 624 (699)
T ss_dssp EECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEECCCTT
T ss_pred EEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceEEeecC
Confidence 999876544 45556678999998754333332211 2334555543 244445556789999999888888877654
Q ss_pred CCCeeEEEEcCC
Q 004270 557 TDRITDFCFSED 568 (764)
Q Consensus 557 ~~~i~~l~~s~d 568 (764)
....+.|++.+.
T Consensus 625 ~~~P~~i~v~~~ 636 (699)
T 1n7d_A 625 LLSPEDMVLFHQ 636 (699)
T ss_dssp CSSCCCCCBCSS
T ss_pred CCCCcEEEEeCc
Confidence 444555655443
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.78 E-value=0.0046 Score=60.05 Aligned_cols=163 Identities=14% Similarity=0.131 Sum_probs=112.3
Q ss_pred CCeEEEEEccCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEE---CCCCCEEEEEe-------
Q 004270 425 TAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC---DSTNTLMISAG------- 493 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~~~l~s~~------- 493 (764)
....+..|.+....+.+++ ..|.|..|+...+........ ...........+.+|.+ +|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3445678887666666666 689999999976544332110 00000011224689999 78888777543
Q ss_pred ------CCCeEEEEECC---CCCeeeeEecC--------------cceEEEEEeecCCEEEEEeCC-CeEEEEEccCCeE
Q 004270 494 ------YHGDIKVWDFK---GRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADD-LVIRLFDVVALRM 549 (764)
Q Consensus 494 ------~dg~v~iwd~~---~~~~~~~~~~~--------------~~i~~~~~s~~~~~la~~~~d-~~i~v~d~~~~~~ 549 (764)
.+..|..+|+. +++.+...... .....++..++|+..++++.. +.|..++.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 26789999999 88877666532 247899999999999998888 888888876442
Q ss_pred EEEee------cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCcc
Q 004270 550 VRKFE------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589 (764)
Q Consensus 550 ~~~~~------~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~ 589 (764)
+..+. ...-..+.|+++|||+.|++...+|.+..+|+.+.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 33221 11223679999999999988877999999998853
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.77 E-value=0.0036 Score=63.10 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=40.2
Q ss_pred cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe----E--EEEeecCCCCeeEEEEcCCCcEEEEEe
Q 004270 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR----M--VRKFEGHTDRITDFCFSEDGKWLLSSG 576 (764)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~----~--~~~~~~h~~~i~~l~~s~dg~~l~s~s 576 (764)
.....++| .+|.++++....+.|...+++... . ...+-.-..++.++++.|||.++++..
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 45567777 567776666677788888876432 1 222323346789999999998777654
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.73 E-value=0.026 Score=54.84 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=112.9
Q ss_pred ecCCccccEEEEeCCCCCCEEEEEe-CCCcEEEEeCCCCeEEEE-EcC----CC--CCeEEEEE---cCCCCEEEEEEc-
Q 004270 134 KLDDKFTPTCIMHPDTYLNKVIVGS-QEGSLQLWNISTKKKLYE-FKG----WG--SSISSCVS---SPALDVVAVGCS- 201 (764)
Q Consensus 134 ~~~~~~~~~~~~~p~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~----h~--~~i~~~~~---sp~~~~la~g~~- 201 (764)
.....+.....|++.. ..+++++ ..++|..||...+..... +.+ .. ..+..+.+ .|+++++++...
T Consensus 9 ~~~~~yPE~~~wd~~~--g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTR--QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp CCTTCCCSCEEEETTT--TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCcccCCcCccCcCCC--CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3344556677888877 6788777 689999999876644333 322 11 14578999 688777776442
Q ss_pred ------------CCeEEEEEcc---CCceEEEEecc------------CCCCEEEEEEeeCCCCEEEEEeCC-CcEEEEE
Q 004270 202 ------------DGKIHVHNVR---YDEELVTFTHS------------MRGAVTALAFSSDGQPLLASGASS-GVISIWN 253 (764)
Q Consensus 202 ------------dg~i~iwd~~---~~~~~~~~~~~------------~~~~v~~l~fs~d~~~~l~sg~~d-g~i~iwd 253 (764)
+..|..+|+. +++.+...... .......++..++|+ ..++++.. +.|...+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEEC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEe
Confidence 6789999999 88887766521 113588999999999 77778877 8888888
Q ss_pred CCCceeeeeee----cccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270 254 LEKRRLQSVIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (764)
Q Consensus 254 ~~~~~~~~~~~----~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (764)
........... .......+.+++.|++..|+.....+.+..+|+..
T Consensus 166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 65442221111 01122467999999999888887799998888763
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.54 E-value=0.073 Score=53.44 Aligned_cols=190 Identities=15% Similarity=0.113 Sum_probs=103.7
Q ss_pred CCeEEEEEccC---CCEEEEEec----C----CcEEEEECcCCc--c--cceecCccccccccccCcEEEEEECCCCCEE
Q 004270 425 TAVKACTISAC---GNFAVLGTA----G----GWIERFNLQSGI--S--RGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (764)
Q Consensus 425 ~~v~~~~~s~~---g~~l~~g~~----~----g~i~i~~~~~~~--~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 489 (764)
.....++++|+ +..|++... + +.|..|+..... . ...+..... ....|. ...++|.|+|.+.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~-~~~~h~--~~~l~~~pDG~Ly 149 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP-GAYIHN--GGRIRFGPDGMLY 149 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE-CCSSCC--CCCEEECTTSCEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC-CCCCcC--CceEEECCCCcEE
Confidence 56788999997 556655544 2 567778766541 1 011100000 011233 4679999999877
Q ss_pred EEEeC-------------CCeEEEEECCCCC-------eeeeEe-cCcceEEEEEee-cCCEEEEEeCCC---eEEEEEc
Q 004270 490 ISAGY-------------HGDIKVWDFKGRD-------LKSRWE-VGCSLVKIVYHR-VNGLLATVADDL---VIRLFDV 544 (764)
Q Consensus 490 ~s~~~-------------dg~v~iwd~~~~~-------~~~~~~-~~~~i~~~~~s~-~~~~la~~~~d~---~i~v~d~ 544 (764)
++.+. .|.|.-++....- ....+. .......++|+| ++.++++-.... .|.+...
T Consensus 150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~ 229 (354)
T 3a9g_A 150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK 229 (354)
T ss_dssp EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT
T ss_pred EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC
Confidence 77543 2455555544220 011222 224567899999 565555433222 2333221
Q ss_pred cC----------------CeEEEEeecCCCCeeEEEEc-------CCCcEEEEEeCCCcEEEEEcCcc-ceE--EEEee-
Q 004270 545 VA----------------LRMVRKFEGHTDRITDFCFS-------EDGKWLLSSGMDGSLRIWDVILA-RQI--DAIHV- 597 (764)
Q Consensus 545 ~~----------------~~~~~~~~~h~~~i~~l~~s-------~dg~~l~s~s~dg~i~iwd~~~~-~~~--~~~~~- 597 (764)
-. ..++..+.........++|. .+|+++++.-..+.|...++... +.. ..+..
T Consensus 230 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 309 (354)
T 3a9g_A 230 GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN 309 (354)
T ss_dssp TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT
T ss_pred CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC
Confidence 00 01222331122457788883 57877777767788888888753 333 22321
Q ss_pred -CCceEEEEEcCCCCeEEEEE
Q 004270 598 -DVSITALSLSPNMDVLATAH 617 (764)
Q Consensus 598 -~~~v~~l~~sp~g~~lat~~ 617 (764)
...+..+++.|||.+.++..
T Consensus 310 ~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 310 VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCeeEEEECCCCcEEEEEe
Confidence 23589999999998776654
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.54 E-value=0.00024 Score=78.97 Aligned_cols=179 Identities=9% Similarity=-0.022 Sum_probs=105.6
Q ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEccC----CceEEEEeccCCCCEEEEEEe
Q 004270 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC-SDGKIHVHNVRY----DEELVTFTHSMRGAVTALAFS 233 (764)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~-~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~l~fs 233 (764)
..+.|+..++.+.+....+.. ...+..++|.+.+..|..+. ..+.|+.+++.. ......+... ......|++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-C--CCCEECC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-CCCcceEEEE
Confidence 345788888877665444433 34567899999777777654 457899998875 1211111111 2235668888
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcC-C-CcEEEEEecCCCCCceeeEecc
Q 004270 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-D-NSIKMWIFDTTDGDPRLLRFRS 311 (764)
Q Consensus 234 ~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d-~~i~vw~~~~~~~~~~~~~~~~ 311 (764)
+.+..++++-...+.|.++++........+. ........+++.|.+..|+.+.. . +.|.+.+++.... +.+ ..
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l--~~ 536 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSL--VT 536 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEE--SC
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEE--Ee
Confidence 6554366665667899999987654433333 22345678899986655555443 2 5666665543211 111 11
Q ss_pred CCCCCCeeEEEecCCCEEEE-EeCCCcEEEEEee
Q 004270 312 GHSAPPLCIRFYANGRHILS-AGQDRAFRLFSVI 344 (764)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s-~~~dg~i~i~d~~ 344 (764)
.....++.|++++++..|+. -+..+.|..+++.
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 23456788999987555544 4455677777764
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.45 E-value=0.046 Score=54.92 Aligned_cols=69 Identities=10% Similarity=0.092 Sum_probs=45.7
Q ss_pred CCeeEEEEcC-------CCcEEEEEeCCCcEEEEEcCccceEEEEee----CCceEEEEEcCCCCeEEEEEeCCCeEEEE
Q 004270 558 DRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLW 626 (764)
Q Consensus 558 ~~i~~l~~s~-------dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~v~~l~~sp~g~~lat~~~d~~~i~lW 626 (764)
.....++|.. +|+++++.-..+.|...++..++.+..... ...+..+++.|||.+.++..... =+||
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~--g~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESS--GELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTT--EEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCC--CEEE
Confidence 3567788863 577777776778888888876655443222 23599999999999776554222 2455
Q ss_pred ec
Q 004270 627 VN 628 (764)
Q Consensus 627 ~~ 628 (764)
.+
T Consensus 349 ri 350 (353)
T 2g8s_A 349 KV 350 (353)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.43 E-value=0.028 Score=55.95 Aligned_cols=191 Identities=13% Similarity=0.121 Sum_probs=112.3
Q ss_pred CeEEEEEccCCCEEEEE------------ecCCcEEEEECcCCcc-cceecCccccccccccCcEEEEEECC--CCC-EE
Q 004270 426 AVKACTISACGNFAVLG------------TAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDS--TNT-LM 489 (764)
Q Consensus 426 ~v~~~~~s~~g~~l~~g------------~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~-~l 489 (764)
....+++.|+|..+++. ..+|.|.++|..+... ...+..... ..........++.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-TLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS-SCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC-CCCcCceeeeeeEEEECCCCcEEE
Confidence 34556677876444433 2789999999874321 112210000 0011234566777654 443 34
Q ss_pred EEE-eC--CCeEEEEECCCCC----eeeeEecC--cceEEEEEeecCCEEEEEeC-----------------CCeEEEEE
Q 004270 490 ISA-GY--HGDIKVWDFKGRD----LKSRWEVG--CSLVKIVYHRVNGLLATVAD-----------------DLVIRLFD 543 (764)
Q Consensus 490 ~s~-~~--dg~v~iwd~~~~~----~~~~~~~~--~~i~~~~~s~~~~~la~~~~-----------------d~~i~v~d 543 (764)
+.+ .. +.+|.+|++.... .+..+... ...+.+.+.++|++.++... .|.|.-+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 4678888876532 22233332 56789999999998777541 23455454
Q ss_pred ccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCc-cce--EEEEeeCCceEEEEEcC-CCCeEEEEEe
Q 004270 544 VVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVIL-ARQ--IDAIHVDVSITALSLSP-NMDVLATAHV 618 (764)
Q Consensus 544 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~~~~v~~l~~sp-~g~~lat~~~ 618 (764)
. ++.. .+...-..-+.++||||++.|..+. ..+.|..|++.. |++ .+.+......-.+++.+ +|++.++++.
T Consensus 210 ~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 P--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecC
Confidence 4 3322 2222234568999999998777654 578899999863 433 23444455588999999 5998887775
Q ss_pred CC
Q 004270 619 DQ 620 (764)
Q Consensus 619 d~ 620 (764)
++
T Consensus 287 ~g 288 (355)
T 3sre_A 287 NG 288 (355)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.43 E-value=0.025 Score=56.31 Aligned_cols=152 Identities=12% Similarity=0.068 Sum_probs=95.3
Q ss_pred EEEEEECCCCCEEEEEe------------CCCeEEEEECCCC--CeeeeEecC--------cceEEEEEee--cCC--EE
Q 004270 477 VVGVACDSTNTLMISAG------------YHGDIKVWDFKGR--DLKSRWEVG--------CSLVKIVYHR--VNG--LL 530 (764)
Q Consensus 477 v~~l~~~~~~~~l~s~~------------~dg~v~iwd~~~~--~~~~~~~~~--------~~i~~~~~s~--~~~--~l 530 (764)
...+++.|+|..+++++ .+|.|.++|.++. +. ..+... .....+.+.+ ++. ++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44666788776655552 6899999998742 32 222211 3566777766 354 44
Q ss_pred EEEeC--CCeEEEEEccCC----eEEEEeecCC-CCeeEEEEcCCCcEEEEEeC---C------------CcEEEEEcCc
Q 004270 531 ATVAD--DLVIRLFDVVAL----RMVRKFEGHT-DRITDFCFSEDGKWLLSSGM---D------------GSLRIWDVIL 588 (764)
Q Consensus 531 a~~~~--d~~i~v~d~~~~----~~~~~~~~h~-~~i~~l~~s~dg~~l~s~s~---d------------g~i~iwd~~~ 588 (764)
++-.. +.+|.+|+++.. ..+..+.+.. ...+++.+.++|++.++... | ..=++|.+..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 568888877653 2344555432 45789999999998887651 1 1223444433
Q ss_pred cceEEEEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecc
Q 004270 589 ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (764)
Q Consensus 589 ~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~ 629 (764)
++.......-...+.++|||||++|..+......|+.|+++
T Consensus 211 ~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 211 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 43333333334589999999999999888766679888876
No 315
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.28 E-value=0.14 Score=52.89 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=73.6
Q ss_pred CcEEEEEECCCCCEEEEEe-CCCeEEEEECCCC------Ce-------eeeEecCcceEEEEEeecCCEEEEEeCCCeEE
Q 004270 475 GEVVGVACDSTNTLMISAG-YHGDIKVWDFKGR------DL-------KSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~------~~-------~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~ 540 (764)
....++.++|||++++.++ .+.++.++|+... +. ....+........+|.++|....+-.-|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 3445688999999998877 5789999998742 11 33445557788999999995555556899999
Q ss_pred EEEccCC----------eEEEEeecCCCCeeEEEE------cCCCcEEEEEe
Q 004270 541 LFDVVAL----------RMVRKFEGHTDRITDFCF------SEDGKWLLSSG 576 (764)
Q Consensus 541 v~d~~~~----------~~~~~~~~h~~~i~~l~~------s~dg~~l~s~s 576 (764)
-|++... ..+.++.-|-.+ -.+.- .|||+||++..
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 9999764 567777766543 23322 67999999875
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.22 E-value=0.016 Score=56.99 Aligned_cols=219 Identities=11% Similarity=0.083 Sum_probs=106.2
Q ss_pred CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEEEEeCCCCe-----EEEEEcCCCC
Q 004270 113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNISTKK-----KLYEFKGWGS 182 (764)
Q Consensus 113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~iwd~~~~~-----~~~~~~~h~~ 182 (764)
..+.++|..+.+-.. +..+. .......+...++ ..++.|+.+ ..+.+||..+.+ .+..+.....
T Consensus 31 ~~~~~~d~~~~~W~~--~~~~p--~~r~~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~ 104 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSF--LPSIT--RKRRYVASVSLHD--RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRG 104 (301)
T ss_dssp CCEEEEETTTTEEEE--CCCCS--SCCBSCEEEEETT--EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCB
T ss_pred eEEEEEcCCCCeEEe--CCCCC--hhhccccEEEECC--EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcc
Confidence 357888887765321 11111 1111222223344 455566644 468999988765 2222222122
Q ss_pred CeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-----CcEEEE
Q 004270 183 SISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISIW 252 (764)
Q Consensus 183 ~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-----g~i~iw 252 (764)
.-.++.+ ++++++.|+.+ ..+.+||+.+++-...-.......-.+++. -++. +++.|+.+ ..+.+|
T Consensus 105 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 105 LAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGV-IYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTE-EEEECCBCSSCBCCCEEEE
T ss_pred ceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCE-EEEECCCCCCcccceEEEE
Confidence 2222222 56677777643 468899988765333222221111112222 2666 77777644 468999
Q ss_pred ECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCC
Q 004270 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (764)
Q Consensus 253 d~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (764)
|+.+.+-...-.......-.++.. -++.+++.|+.+ +.+.+||..+. .+..+..+....... ++.. -+++
T Consensus 181 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~-~~~~-~~~~ 255 (301)
T 2vpj_A 181 DPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD--SWTTVTSMTTPRCYV-GATV-LRGR 255 (301)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT--EEEEECCCSSCCBSC-EEEE-ETTE
T ss_pred eCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC--cEEECCCCCCcccce-eEEE-ECCE
Confidence 998875443321111111112222 256677777654 35666665443 333332222111111 2222 2677
Q ss_pred EEEEEeCC-----CcEEEEEeecc
Q 004270 328 HILSAGQD-----RAFRLFSVIQD 346 (764)
Q Consensus 328 ~l~s~~~d-----g~i~i~d~~~~ 346 (764)
.++.|+.+ ..+.+||+.+.
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEEEcCcCCCcccccEEEEcCCCC
Confidence 77777755 34667776544
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.15 E-value=0.11 Score=50.91 Aligned_cols=202 Identities=9% Similarity=0.064 Sum_probs=97.3
Q ss_pred EEEEecCceE-EEe---cccccceEEEEEeCCEEEEEecC-----CcEEEEEccCCc---ccccceeeEecCCccccEEE
Q 004270 77 IAVVKRAHQV-ATW---SRHSAKVNLLLLFGEHILSIDID-----GNMFIWAFKGIE---ENLAPVGHVKLDDKFTPTCI 144 (764)
Q Consensus 77 i~vw~~~~~~-~~~---~~h~~~v~~l~~~g~~l~s~~~d-----g~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~ 144 (764)
+.+||..... ..+ ......-..+..++..++.|+.+ ..+.+||..+.+ -. .+..+... .....++
T Consensus 33 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~--~~~~~p~~-r~~~~~~ 109 (301)
T 2vpj_A 33 VEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY--SVAPMNVR-RGLAGAT 109 (301)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE--EECCCSSC-CBSCEEE
T ss_pred EEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE--ECCCCCCC-ccceeEE
Confidence 7777754322 121 11122222333456666666644 458899988776 31 12222111 1112222
Q ss_pred EeCCCCCCEEEEEeCC-----CcEEEEeCCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccC
Q 004270 145 MHPDTYLNKVIVGSQE-----GSLQLWNISTKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRY 212 (764)
Q Consensus 145 ~~p~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~ 212 (764)
. .++ ..++.|+.+ ..+.+||..+.+-.. .+......-.++.+ ++++++.|+.+ ..+.+||+.+
T Consensus 110 ~-~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 110 T-LGD--MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp E-ETT--EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred E-ECC--EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 2 244 345555543 358899987765332 22221112222222 66777777654 4688999887
Q ss_pred CceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-----CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (764)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 287 (764)
++-...-.......-.+++. -++. +++.|+.+ ..+.+||+.+.+-...-.......-.++.. -++.+++.|+
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~-~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG 261 (301)
T 2vpj_A 185 GHWTNVTPMATKRSGAGVAL-LNDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAG 261 (301)
T ss_dssp TEEEEECCCSSCCBSCEEEE-ETTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred CcEEeCCCCCcccccceEEE-ECCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcC
Confidence 65333211111111112222 2555 77777653 568999998875433321111111112222 2666777776
Q ss_pred CC
Q 004270 288 AD 289 (764)
Q Consensus 288 ~d 289 (764)
.+
T Consensus 262 ~~ 263 (301)
T 2vpj_A 262 YD 263 (301)
T ss_dssp BC
T ss_pred cC
Confidence 55
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.14 E-value=0.26 Score=49.39 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=82.4
Q ss_pred ccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEc---CCCCCeEEEEEcCC---CCEEEEEEc----C----
Q 004270 138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFK---GWGSSISSCVSSPA---LDVVAVGCS----D---- 202 (764)
Q Consensus 138 ~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~h~~~i~~~~~sp~---~~~la~g~~----d---- 202 (764)
.....+++.|++ .|+++..+|.|++++ .+++ .+..+. ........++++|+ +..|.++.. +
T Consensus 29 ~~P~~ia~~pdG---~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGG---RYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETT---EEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCC---eEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 344677889988 477777889999997 4565 222221 12356889999998 455555443 3
Q ss_pred CeEEEEEccCC-------ceEE-EEeccCCCCEEEEEEeeCCCCEEEEEeC-------------CCcEEEEECCCce---
Q 004270 203 GKIHVHNVRYD-------EELV-TFTHSMRGAVTALAFSSDGQPLLASGAS-------------SGVISIWNLEKRR--- 258 (764)
Q Consensus 203 g~i~iwd~~~~-------~~~~-~~~~~~~~~v~~l~fs~d~~~~l~sg~~-------------dg~i~iwd~~~~~--- 258 (764)
+.|..|+...+ +.+. .+..........|+|.|||. +.++-+. .|.|.-++....-
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56778877654 1111 12211112346799999998 5555332 2456666654320
Q ss_pred ----eeeeeecccccCeeEEEEec-CCCEEEEE
Q 004270 259 ----LQSVIREAHDNAIISLHFFA-NEPVLMSA 286 (764)
Q Consensus 259 ----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~ 286 (764)
....+..+|. ....++|.| ++.+.++-
T Consensus 184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence 1122222443 356899999 56554443
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.10 E-value=0.03 Score=54.99 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=104.2
Q ss_pred CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--EcCCCCCeE
Q 004270 113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNISTKKKLYE--FKGWGSSIS 185 (764)
Q Consensus 113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~i~ 185 (764)
..+.++|..+.+-.. +..+... .....++. -++ ..++.|+.+ ..+.+||..+.+-... +......-.
T Consensus 30 ~~~~~~d~~~~~W~~--~~~~p~~-r~~~~~~~-~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 103 (302)
T 2xn4_A 30 RSVECYDFKEERWHQ--VAELPSR-RCRAGMVY-MAG--LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLG 103 (302)
T ss_dssp CCEEEEETTTTEEEE--ECCCSSC-CBSCEEEE-ETT--EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CcEEEEcCcCCcEeE--cccCCcc-cccceEEE-ECC--EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceE
Confidence 347778877664311 1111111 11122222 244 345556543 3588899877653222 111111222
Q ss_pred EEEEcCCCCEEEEEEcCC-----eEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC-------CCcEEEEE
Q 004270 186 SCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-------SGVISIWN 253 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~-------dg~i~iwd 253 (764)
++.+ ++.+++.|+.++ .+.+||+.+.+-...-.......-.+++. -++. +++.|+. ...+.+||
T Consensus 104 ~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~yd 179 (302)
T 2xn4_A 104 AAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGL-LYAVGGYDVASRQCLSTVECYN 179 (302)
T ss_dssp EEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-EEEECCEETTTTEECCCEEEEE
T ss_pred EEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCE-EEEEeCCCCCCCccccEEEEEe
Confidence 2222 567777777553 57888887765332211111111112222 2565 6666653 24588999
Q ss_pred CCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC-----cEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCE
Q 004270 254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (764)
Q Consensus 254 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (764)
+.+.+-...-.......-.++.. -++.+++.|+.++ .+.+||..+ ..+..+..+...... .++.. -+++.
T Consensus 180 ~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~r~~-~~~~~-~~~~i 254 (302)
T 2xn4_A 180 ATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTT--NAWRQVADMNMCRRN-AGVCA-VNGLL 254 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTT--TEEEEECCCSSCCBS-CEEEE-ETTEE
T ss_pred CCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCC--CCEeeCCCCCCcccc-CeEEE-ECCEE
Confidence 98775433211011111112222 2566777776543 466665543 333333322211111 12222 26777
Q ss_pred EEEEeCCC-----cEEEEEeeccc
Q 004270 329 ILSAGQDR-----AFRLFSVIQDQ 347 (764)
Q Consensus 329 l~s~~~dg-----~i~i~d~~~~~ 347 (764)
++.|+.++ .+.+||+.+.+
T Consensus 255 ~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 255 YVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEECCcCCCcccccEEEEcCCCCe
Confidence 77777553 47888876553
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.10 E-value=0.048 Score=53.66 Aligned_cols=221 Identities=9% Similarity=0.095 Sum_probs=108.1
Q ss_pred CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC----CcEEEEeCCCCeEEEE--EcCCCCCeE
Q 004270 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----GSLQLWNISTKKKLYE--FKGWGSSIS 185 (764)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~h~~~i~ 185 (764)
...+.+||..+.+-.. +..+. .......+...++ ..++.|+.+ ..+.+||..+.+-... +........
T Consensus 23 ~~~~~~~d~~~~~W~~--~~~~p--~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 96 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTD--IRCPF--EKRRDAACVFWDN--VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLA 96 (306)
T ss_dssp TTSEEEEETTTTEEEE--CCCCS--CCCBSCEEEEETT--EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCE
T ss_pred CceEEEecCCCCCEec--CCCCC--cccceeEEEEECC--EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccccee
Confidence 3568888887765421 11111 1111122222344 345566544 5688999887753322 221111222
Q ss_pred EEEEcCCCCEEEEEEcC------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC---------CCcEE
Q 004270 186 SCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---------SGVIS 250 (764)
Q Consensus 186 ~~~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~---------dg~i~ 250 (764)
++.+ ++++++.|+.+ ..+.+||..+++-...-.......-.+++. -++. +++.|+. ...+.
T Consensus 97 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~ 172 (306)
T 3ii7_A 97 ACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGL-IYVCGGSLGNNVSGRVLNSCE 172 (306)
T ss_dssp EEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-EEEECCEESCTTTCEECCCEE
T ss_pred EEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCE-EEEECCCCCCCCcccccceEE
Confidence 2222 56777777754 468899988775332211111111112222 3566 6666653 35588
Q ss_pred EEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecC
Q 004270 251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (764)
Q Consensus 251 iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (764)
+||+.+.+-...-.......-.++... ++.+++.|+.+ ..+.+||..+. .+..+..+.........+.+ +
T Consensus 173 ~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~ 247 (306)
T 3ii7_A 173 VYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV--G 247 (306)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE--T
T ss_pred EeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEE--C
Confidence 999988754333221111111222222 66677777654 34566655433 33333222221222222222 6
Q ss_pred CCEEEEEeCC-----CcEEEEEeeccc
Q 004270 326 GRHILSAGQD-----RAFRLFSVIQDQ 347 (764)
Q Consensus 326 ~~~l~s~~~d-----g~i~i~d~~~~~ 347 (764)
++.++.|+.+ ..+.+||+.+.+
T Consensus 248 ~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 248 SIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 7777788754 456777776543
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.09 E-value=0.18 Score=49.40 Aligned_cols=196 Identities=8% Similarity=-0.071 Sum_probs=93.4
Q ss_pred EeCCEEEEEecC----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCC------CcEEEEeCCC
Q 004270 101 LFGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWNIST 170 (764)
Q Consensus 101 ~~g~~l~s~~~d----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d------g~i~iwd~~~ 170 (764)
.++..++.|+.+ ..+.++|..+.+-.. +..+. .......+..-++ ..++.|+.+ ..+.+||..+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~--~~~~p--~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYS--KLGPP--TPRDSLAACAAEG--KIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEE--EECCS--SCCBSCEEEEETT--EEEEECCBBTTBSCCCCEEEEETTT
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEE--CCCCC--ccccceeEEEECC--EEEEECCCCCCCcEeeeEEEEeCCC
Confidence 455555555543 457788877765311 11111 1111122222244 355566654 4588999887
Q ss_pred CeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEc---------CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270 171 KKKLYE--FKGWGSSISSCVSSPALDVVAVGCS---------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 171 ~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (764)
.+-... +......-.++. -++++++.|+. ...+.+||+.+++-...-.......-.++.. -+++ +
T Consensus 128 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-i 203 (306)
T 3ii7_A 128 ESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDK-I 203 (306)
T ss_dssp TEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-E
T ss_pred CceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCE-E
Confidence 653222 111111112222 25666666653 3458899988775332211111111112222 2566 7
Q ss_pred EEEEeCC-----CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecCCCCCceeeEe
Q 004270 240 LASGASS-----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDTTDGDPRLLRF 309 (764)
Q Consensus 240 l~sg~~d-----g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~~ 309 (764)
++.|+.+ ..+.+||+.+.+-...-.......-.++... ++.+++.|+.+ +.+.+||. ....+..+..
T Consensus 204 ~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~ 280 (306)
T 3ii7_A 204 FAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSK 280 (306)
T ss_dssp EEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEE
T ss_pred EEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCC
Confidence 7777643 4689999988753322111111111122222 66777777754 33455544 3334444433
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.07 E-value=0.3 Score=48.94 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=41.0
Q ss_pred cCcEEEEEECC-------CCCEEEEEeCCCeEEEEECCCCCeeeeEec----CcceEEEEEeecCCEEEEE
Q 004270 474 NGEVVGVACDS-------TNTLMISAGYHGDIKVWDFKGRDLKSRWEV----GCSLVKIVYHRVNGLLATV 533 (764)
Q Consensus 474 ~~~v~~l~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~i~~~~~s~~~~~la~~ 533 (764)
.....+++|.. +++++++.-..+.|...++..++....... ...+..+++.|||.++++.
T Consensus 270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 34678888864 467777766778888888876544333221 2578899999999866654
No 323
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.05 E-value=0.18 Score=49.03 Aligned_cols=165 Identities=7% Similarity=0.035 Sum_probs=96.6
Q ss_pred EEccCCCEEEEEe----cCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCC
Q 004270 431 TISACGNFAVLGT----AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKG 505 (764)
Q Consensus 431 ~~s~~g~~l~~g~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~ 505 (764)
.+++++++|+... .+..|+..++.... ...+. .+.. .+++++++.|+-.+. ...|..-++..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt--------~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIK--------NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEE--------SSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEe--------CCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 6778899988776 23466666666433 33332 2221 456778888876654 57788888877
Q ss_pred CCeeeeEecCcceEEEEEeecCCEEEEEeCC--CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeC--CCcE
Q 004270 506 RDLKSRWEVGCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM--DGSL 581 (764)
Q Consensus 506 ~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d--~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~--dg~i 581 (764)
+.....+.. .. ...++|++++|+....+ ..|..-+++... ...+.. ..+ ..|+|++++|..++. .+.|
T Consensus 177 ~~~~~l~~~--~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i 248 (302)
T 3s25_A 177 QSEALFYDC--NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPAL 248 (302)
T ss_dssp TEEEEEECS--CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEE
T ss_pred CCEEEEeCC--Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEE
Confidence 655444332 22 23467999999887654 367777776554 334432 233 347888998886532 3556
Q ss_pred EEEEcCccceEEEEeeCCceEEEEEcCCCCeEEEEEeCC
Q 004270 582 RIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 582 ~iwd~~~~~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~ 620 (764)
..-++. |.....+... .+. ++++.+++|.-.....
T Consensus 249 ~~~~~D-G~~r~~l~~~-~~~--~i~i~~d~Iy~td~~~ 283 (302)
T 3s25_A 249 CVVKND-GTGFKELAKG-EFC--NINVTSQYVYFTDFVS 283 (302)
T ss_dssp EEEETT-SCCCEEEEES-CEE--EEEECSSEEEEEETTT
T ss_pred EEEECC-CCccEEeeCC-ccc--eEEEeCCEEEEEECCC
Confidence 666654 4333333322 233 4455667777665443
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.01 E-value=0.065 Score=62.09 Aligned_cols=231 Identities=16% Similarity=0.204 Sum_probs=141.9
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCE
Q 004270 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (764)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (764)
..+|.|.|+.++..+..- .-.--+.-.+|..+.||.-. ..++.|+|+.+...+..+... .+|.-=.|-.+..
T Consensus 47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~--e~VvfWkWis~~~-- 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLNT-- 118 (1630)
T ss_pred CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC--CCceEEEecCCCe--
Confidence 347888898876654221 11112345678888887765 688999999999888888764 5677777776654
Q ss_pred EEEEeCCCcEEEEECCCc-eeeeeeeccc----ccCeeEEEEecCCCEEEEEc-------CCCcEEEEEecCCCCCceee
Q 004270 240 LASGASSGVISIWNLEKR-RLQSVIREAH----DNAIISLHFFANEPVLMSAS-------ADNSIKMWIFDTTDGDPRLL 307 (764)
Q Consensus 240 l~sg~~dg~i~iwd~~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~~-------~d~~i~vw~~~~~~~~~~~~ 307 (764)
|+..+ +..|..|++... .+.+.+. -| ...|..-..++++++++..| -.|.+.+|..+.. ..
T Consensus 119 l~lVT-~~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~s 191 (1630)
T 1xi4_A 119 VALVT-DNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VS 191 (1630)
T ss_pred eEEEc-CCeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----cc
Confidence 43333 468999999743 3433333 23 35677777788888777544 3478888877654 34
Q ss_pred EeccCCCCCCeeEEEec---CCCEEEEEeC---CCcEEEEEeecc-cccccccchhhhHHHhhccchhhhhccCceeEee
Q 004270 308 RFRSGHSAPPLCIRFYA---NGRHILSAGQ---DRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (764)
Q Consensus 308 ~~~~~h~~~v~~i~~~~---~~~~l~s~~~---dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (764)
+.+.||......+.... ....++.+.. .+.+++.++... .....+ .++.
T Consensus 192 Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f-----~kk~------------------- 247 (1630)
T 1xi4_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-----PKKA------------------- 247 (1630)
T ss_pred hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC-----cccc-------------------
Confidence 44567766554444432 1122222221 256777776443 111000 0000
Q ss_pred ecccccccccceeEeeeCCceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccc
Q 004270 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (764)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (764)
....-+.........++.+|+.-..+.+-+.-|.+++||+.++..+.
T Consensus 248 ---------------------------------~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 248 ---------------------------------VDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred ---------------------------------ccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 01111111223566788889988999999999999999999998875
Q ss_pred ee
Q 004270 461 SY 462 (764)
Q Consensus 461 ~~ 462 (764)
.-
T Consensus 295 ~~ 296 (1630)
T 1xi4_A 295 MN 296 (1630)
T ss_pred hc
Confidence 43
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.01 E-value=0.31 Score=48.13 Aligned_cols=112 Identities=17% Similarity=0.246 Sum_probs=66.3
Q ss_pred CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeee--e---ecccccCeeEEEEecC---CCEEEEE---cCCCcE
Q 004270 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--I---REAHDNAIISLHFFAN---EPVLMSA---SADNSI 292 (764)
Q Consensus 224 ~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~--~---~~~h~~~v~~l~~~~~---~~~l~s~---~~d~~i 292 (764)
-.....|+|.|||+ ++++-...|.|++++..+++.... + ..........++++|+ +..|... ..++.|
T Consensus 31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 45678999999998 776665589999998766543221 1 1123567899999995 3344332 234455
Q ss_pred EEEEecCCC------CCce-eeEecc-CCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 293 KMWIFDTTD------GDPR-LLRFRS-GHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 293 ~vw~~~~~~------~~~~-~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
.-|.++... ...+ ++..+. +.......|.|.|||.+.++.+..+
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~ 161 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG 161 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence 555544321 0112 222221 2223456799999998777766443
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.01 E-value=0.083 Score=51.75 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=111.2
Q ss_pred CCeEEEEEEeC----CeEEEEecCCCeEEEecCC-CCcceEEEEEeCCeEEEEEC-------CeEEEEecCceE-EE---
Q 004270 25 GTENFVTVSVG----KAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYG-------NHIAVVKRAHQV-AT--- 88 (764)
Q Consensus 25 ~~~~~~~~~~~----~~i~iwd~~~~~~~~~~~~-~~~~I~~~~~~~~~~~~a~g-------~~i~vw~~~~~~-~~--- 88 (764)
++..++.++.+ +.+..||..+.+-...... .+..-.+++...+..|+..| +++.+||..... ..
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 34455555542 4688999998775544311 12222344455556665544 128888864332 11
Q ss_pred ecccccceEEEEEeCCEEEEEecCC-----cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC----
Q 004270 89 WSRHSAKVNLLLLFGEHILSIDIDG-----NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ---- 159 (764)
Q Consensus 89 ~~~h~~~v~~l~~~g~~l~s~~~dg-----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~---- 159 (764)
+......-..+..++..++.|+.++ .+.+||..+.+-.. +..+.. ......++. -++ ..++.|+.
T Consensus 95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~--~~~~p~-~r~~~~~~~-~~~--~iyv~GG~~~~~ 168 (302)
T 2xn4_A 95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH--VAPMNT-RRSSVGVGV-VGG--LLYAVGGYDVAS 168 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEE--ECCCSS-CCBSCEEEE-ETT--EEEEECCEETTT
T ss_pred CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEee--cCCCCC-cccCceEEE-ECC--EEEEEeCCCCCC
Confidence 2222222233335676667776553 46778877665321 111111 111122222 233 34455543
Q ss_pred ---CCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEE
Q 004270 160 ---EGSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTA 229 (764)
Q Consensus 160 ---dg~i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~ 229 (764)
...+.+||+.+.+-... +........++.+ ++.+++.|+.+ ..+.+||+.+++-...-.......-.+
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence 24588999887643222 2211111222222 56777777654 468899988765332211111111111
Q ss_pred EEEeeCCCCEEEEEeCC-----CcEEEEECCCcee
Q 004270 230 LAFSSDGQPLLASGASS-----GVISIWNLEKRRL 259 (764)
Q Consensus 230 l~fs~d~~~~l~sg~~d-----g~i~iwd~~~~~~ 259 (764)
++ .-++. +++.|+.+ ..+.+||+.+.+-
T Consensus 247 ~~-~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 247 VC-AVNGL-LYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EE-EETTE-EEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EE-EECCE-EEEECCcCCCcccccEEEEcCCCCeE
Confidence 22 23566 77777654 3478888877643
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.86 E-value=0.081 Score=61.30 Aligned_cols=279 Identities=12% Similarity=0.184 Sum_probs=157.8
Q ss_pred ceeeeeecCCCcceEEecCCeEEEEEEe----CCeEEEEecCCCeEEEecCCCCcceE--EEEEeCCeEEEEE--CCeEE
Q 004270 7 YKAIGYITSSVPFSVQRLGTENFVTVSV----GKAFHIYNCAKLNLVLVGPQLPKKIR--ALASYRDYTFAAY--GNHIA 78 (764)
Q Consensus 7 ~r~~g~~~~~v~~~~~~~~~~~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~I~--~~~~~~~~~~~a~--g~~i~ 78 (764)
...+|.....+.|...+..++.+|+.-. +.++.|-|..+...+.. .+|. +.-++|....+|- |..+.
T Consensus 15 L~~lGi~~~~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~r-----rpi~AdsAIMnP~~~iiALrag~~lQ 89 (1630)
T 1xi4_A 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKAGKTLQ 89 (1630)
T ss_pred hhhcCCCcccccccceeeecCceEEEEecCCCCceEEEEECCCCCCccc-----ccccchhhccCCCcceEEEecCCeEE
Confidence 4567776677788766666666666554 45799999988665422 2222 2336676555553 66799
Q ss_pred EEecCce--EEEecccccceEEEEE-eCCEEEEEecCCcEEEEEccCCcccccceeeEec----CCccccEEEEeCCCCC
Q 004270 79 VVKRAHQ--VATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL----DDKFTPTCIMHPDTYL 151 (764)
Q Consensus 79 vw~~~~~--~~~~~~h~~~v~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~ 151 (764)
||+.... ++...- ..+|.-..| +.+.|+-.+ +..|..|++.+... |..-+.. .+..++.-..+++.
T Consensus 90 iFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~---P~k~fdR~~~L~~~QIinY~~d~~~-- 162 (1630)
T 1xi4_A 90 IFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQ-- 162 (1630)
T ss_pred EeehHHhhhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCc---cHHHHhcchhcccCeeEEeeeCCCC--
Confidence 9997443 333222 234655565 566666665 77899999976322 2222222 23334444456665
Q ss_pred CEEEEEe-------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEc--C-CCCEEEEEEc---CCeEEEEEccCC---ce
Q 004270 152 NKVIVGS-------QEGSLQLWNISTKKKLYEFKGWGSSISSCVSS--P-ALDVVAVGCS---DGKIHVHNVRYD---EE 215 (764)
Q Consensus 152 ~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s--p-~~~~la~g~~---dg~i~iwd~~~~---~~ 215 (764)
++++..+ -.|.+.+|.++. +.-+.+.||.+....+... + ...+++.+.. .+.++|-++... ..
T Consensus 163 kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~ 241 (1630)
T 1xi4_A 163 KWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 241 (1630)
T ss_pred CeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC
Confidence 4444322 348899998743 4555567775544433332 1 1223333322 268888888543 11
Q ss_pred E-----EEEecc---CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270 216 L-----VTFTHS---MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (764)
Q Consensus 216 ~-----~~~~~~---~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 287 (764)
. ..+..+ ...-..++..++.-. ++..-+.-|.|.++|++++.++..-+ -....|...+......-++...
T Consensus 242 ~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vn 319 (1630)
T 1xi4_A 242 PFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVN 319 (1630)
T ss_pred CCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhcc-ccCCceEEeccCCCCCceEEEc
Confidence 0 001111 022334556665555 67777889999999999998887766 3444555444444333455555
Q ss_pred CCCcEEEEEecCC
Q 004270 288 ADNSIKMWIFDTT 300 (764)
Q Consensus 288 ~d~~i~vw~~~~~ 300 (764)
..|.|.--.++..
T Consensus 320 r~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 320 RKGQVLSVCVEEE 332 (1630)
T ss_pred CCceEEEEEEccc
Confidence 6666555544433
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.86 E-value=0.094 Score=52.52 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=91.4
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC-----cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe--------
Q 004270 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-------- 548 (764)
Q Consensus 482 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~-------- 548 (764)
...+|..++.+- ++.||.-++......+.+... ..+..+..+|+|++||..+ +..|.|..+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 344565565554 478888888855555555554 3688999999999999985 5589998887331
Q ss_pred ----EEEEeec------CCCCeeEEEEcCC---CcEEEEEeCCCcEEEEEcCccc--eEEEEe-------eC---CceEE
Q 004270 549 ----MVRKFEG------HTDRITDFCFSED---GKWLLSSGMDGSLRIWDVILAR--QIDAIH-------VD---VSITA 603 (764)
Q Consensus 549 ----~~~~~~~------h~~~i~~l~~s~d---g~~l~s~s~dg~i~iwd~~~~~--~~~~~~-------~~---~~v~~ 603 (764)
..+.+.- ...+|..+.|+|- +..|++-..|++||+||+.... +. .++ .. ..|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1223321 3577999999994 4589999999999999998632 22 222 11 34889
Q ss_pred EEEcCCCCeEEEEE
Q 004270 604 LSLSPNMDVLATAH 617 (764)
Q Consensus 604 l~~sp~g~~lat~~ 617 (764)
++|.++|-.|....
T Consensus 185 ~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 185 LEFSKDGLTLYCLN 198 (452)
T ss_dssp EEECTTSSCEEEEE
T ss_pred EEEcCCCcEEEEEe
Confidence 99998776666644
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.59 E-value=0.07 Score=52.49 Aligned_cols=229 Identities=13% Similarity=0.036 Sum_probs=108.1
Q ss_pred eCCEEEEEec----CCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC----C-----CcEEEEeC
Q 004270 102 FGEHILSIDI----DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ----E-----GSLQLWNI 168 (764)
Q Consensus 102 ~g~~l~s~~~----dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~----d-----g~i~iwd~ 168 (764)
++..++.|+. -..+.++|..+.+-.. +..+... .....++ ..++ ..++.|+. + +.+.+||.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~--~~~~p~~-r~~~~~~-~~~~--~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR--LADLQVP-RSGLAGC-VVGG--LLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEE--CCCCSSC-CBSCEEE-EETT--EEEEECCEEEETTEEEECCCEEEEET
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeE--CCCCCcc-cccceEE-EECC--EEEEECCCcCCCCCCeecceEEEECC
Confidence 4455555543 2357888887765421 1111111 1112222 2244 34555554 2 46888998
Q ss_pred CCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccC-CCCEEEEEEeeCCCCEE
Q 004270 169 STKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLL 240 (764)
Q Consensus 169 ~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~l 240 (764)
.+.+-... +........++.+ ++++++.|+.+ ..+.+||..+++-...-.... ...-.++.+ ++. ++
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iy 172 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL-LY 172 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EE
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE-EE
Confidence 77653221 1111112222222 56677776643 468889988765322211111 111122222 565 77
Q ss_pred EEEeCC-----CcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCC-----CcEEEEEecCCCCCceeeEec
Q 004270 241 ASGASS-----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFDTTDGDPRLLRFR 310 (764)
Q Consensus 241 ~sg~~d-----g~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~~~ 310 (764)
+.|+.+ ..+.+||+.+.+-...-.......-.++... ++.+++.|+.+ ..+.+||+... .+..+..+
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCC
Confidence 777643 4689999887754322110111111122222 66677777654 44666665443 33333222
Q ss_pred cCCCCCCeeEEEecCCCEEEEEeCC-----CcEEEEEeecc
Q 004270 311 SGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQD 346 (764)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~i~d~~~~ 346 (764)
...... .++... +++.++.|+.+ ..+.+||+.+.
T Consensus 250 p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRRSA-LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCccc-eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 211111 122222 66777777644 34667776554
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.069 Score=52.57 Aligned_cols=112 Identities=10% Similarity=0.151 Sum_probs=75.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEE--cC-CCCEEEEE-EcCCeEEEEEccCCceEEEEeccC---
Q 004270 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGW-GSSISSCVS--SP-ALDVVAVG-CSDGKIHVHNVRYDEELVTFTHSM--- 223 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~--sp-~~~~la~g-~~dg~i~iwd~~~~~~~~~~~~~~--- 223 (764)
+.+++++.||.|.-+|.++|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47999999999999999999999999764 122222110 01 22333333 689999999998886665555321
Q ss_pred CCCEEE---EEE------eeCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 004270 224 RGAVTA---LAF------SSDGQPLLASGASSGVISIWNLEKRRLQSVIRE 265 (764)
Q Consensus 224 ~~~v~~---l~f------s~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 265 (764)
..++.. ... + .+. .+++|+.+|.+...|+.+|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~-~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIV-EDE-KVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC-----------CCE-EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccc-cCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence 112221 000 1 233 688999999999999999999988873
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.53 E-value=0.37 Score=47.38 Aligned_cols=214 Identities=10% Similarity=0.017 Sum_probs=104.2
Q ss_pred CeEEEEecCCCeEEEec-CC-CCcceEEEEEeCCeEEEEECC-------------eEEEEecCceE-EEe---cccccce
Q 004270 36 KAFHIYNCAKLNLVLVG-PQ-LPKKIRALASYRDYTFAAYGN-------------HIAVVKRAHQV-ATW---SRHSAKV 96 (764)
Q Consensus 36 ~~i~iwd~~~~~~~~~~-~~-~~~~I~~~~~~~~~~~~a~g~-------------~i~vw~~~~~~-~~~---~~h~~~v 96 (764)
+.+..||..+.+-.... +. .+..=.+++...+..|+..|. .+.+||..... ..+ ......-
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 78999999998754322 21 133334455555666666551 16777764322 221 1111111
Q ss_pred EEEEEeCCEEEEEecC--------CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC------CCc
Q 004270 97 NLLLLFGEHILSIDID--------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ------EGS 162 (764)
Q Consensus 97 ~~l~~~g~~l~s~~~d--------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~------dg~ 162 (764)
..+..++..++.|+.+ ..+.++|..+.+-.. +..+ ........+...++ ..++.|+. -..
T Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~--p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE--SDPL--PYVVYGHTVLSHMD--LVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE--CCCC--SSCCBSCEEEEETT--EEEEECCBCTTSCBCCC
T ss_pred eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE--CCCC--CCcccceeEEEECC--EEEEEeCCCCCCcccce
Confidence 2223355555555532 348888887765311 1111 11122222233344 34555655 246
Q ss_pred EEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcCC-----eEEEEEccCCceEEEEeccCCCCEEEEEEeeC
Q 004270 163 LQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTFTHSMRGAVTALAFSSD 235 (764)
Q Consensus 163 i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d 235 (764)
+.+||+.+.+=... +......-.++.+ ++++++.|+.++ .+.+||+.+++-...-.......-.+++. -+
T Consensus 167 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~ 243 (315)
T 4asc_A 167 MCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LV 243 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred EEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-EC
Confidence 89999887642221 1111111122222 567777887654 58889988765332211111111112222 25
Q ss_pred CCCEEEEEeCCC--------------cEEEEECCCcee
Q 004270 236 GQPLLASGASSG--------------VISIWNLEKRRL 259 (764)
Q Consensus 236 ~~~~l~sg~~dg--------------~i~iwd~~~~~~ 259 (764)
++ +++.|+.++ .+.+||+++.+-
T Consensus 244 ~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 244 GT-LYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp TE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred CE-EEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 55 777776532 356777766543
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.53 E-value=0.25 Score=49.54 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=95.8
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCceEEEEeccC---CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCcee--------
Q 004270 191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM---RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-------- 259 (764)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~-------- 259 (764)
.+|..++++- ++.||.-++..+..-+.+.... -..|..+..+|+|. +||..+ +..|.|-.+..+..
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccc
Confidence 4455555544 3677777776544444554431 23688899999999 777765 56899988873311
Q ss_pred ----eeeeecc-----cccCeeEEEEecC---CCEEEEEcCCCcEEEEEecCCCCCceeeE------eccCCCCCCeeEE
Q 004270 260 ----QSVIREA-----HDNAIISLHFFAN---EPVLMSASADNSIKMWIFDTTDGDPRLLR------FRSGHSAPPLCIR 321 (764)
Q Consensus 260 ----~~~~~~~-----h~~~v~~l~~~~~---~~~l~s~~~d~~i~vw~~~~~~~~~~~~~------~~~~h~~~v~~i~ 321 (764)
...+..+ ...+|..+.|+|- +..|++-..|+.|++||+......+..+. ........|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 1122211 2467999999994 45899999999999999987544333221 1122336788899
Q ss_pred EecCCCEEEEEe--CCCcEEEE
Q 004270 322 FYANGRHILSAG--QDRAFRLF 341 (764)
Q Consensus 322 ~~~~~~~l~s~~--~dg~i~i~ 341 (764)
|.+++-.|...+ ..|.|.-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 998876666655 66766544
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.53 E-value=0.17 Score=49.87 Aligned_cols=208 Identities=9% Similarity=-0.010 Sum_probs=106.1
Q ss_pred ceEEEEEccceeecceeecCCCCCCCCeEEEEEccCCCEEEEEec-----C------CcEEEEECcCCcccceecCcccc
Q 004270 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-----G------GWIERFNLQSGISRGSYLDMSER 468 (764)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----~------g~i~i~~~~~~~~~~~~~~~~~~ 468 (764)
..+..||..+..... ...+.........+...++..++.|+. . ..+..||..+..-...-..+.
T Consensus 13 ~~~~~yd~~~~~W~~---~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-- 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC---ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS-- 87 (315)
T ss_dssp TEEEEEETTTTEEEE---EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS--
T ss_pred CceEEECCCCCeEec---CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc--
Confidence 567888887766432 111111123334444567888888873 1 137788888765322211000
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCC--------CeEEEEECCCCCeeeeEecC-cceEEEEEeecCCEEEEEeC-C--
Q 004270 469 SNYAHNGEVVGVACDSTNTLMISAGYH--------GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-D-- 536 (764)
Q Consensus 469 ~~~~h~~~v~~l~~~~~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d-- 536 (764)
....| ..+.+ +++.++.|+.+ ..+.+||..+.+-...-... ......+..-++++++.|+. +
T Consensus 88 ~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 88 PRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred chhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 00112 11222 56677777643 35888998876533222222 11112222346677777765 2
Q ss_pred ---CeEEEEEccCCeEEEEeecCCCCeeEEEEcCCCcEEEEEeCCC-----cEEEEEcCccceEEEEeeCCc--eEEEEE
Q 004270 537 ---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG-----SLRIWDVILARQIDAIHVDVS--ITALSL 606 (764)
Q Consensus 537 ---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~--v~~l~~ 606 (764)
..+.+||..+.+-...-.-...+....+..-++++++.|+.++ .+.+||+.+.+-...-..+.+ -.+++.
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 241 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS 241 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE
Confidence 4789999887643322111111111122223778888887654 588899988754433222222 112222
Q ss_pred cCCCCeEEEEEeC
Q 004270 607 SPNMDVLATAHVD 619 (764)
Q Consensus 607 sp~g~~lat~~~d 619 (764)
-++.+++.++.+
T Consensus 242 -~~~~l~v~GG~~ 253 (315)
T 4asc_A 242 -LVGTLYAIGGFA 253 (315)
T ss_dssp -ETTEEEEEEEEE
T ss_pred -ECCEEEEECCcc
Confidence 266777777764
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.44 E-value=0.28 Score=51.02 Aligned_cols=153 Identities=11% Similarity=0.104 Sum_probs=88.4
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEe---------cCcceEEEEEeec---CCEEEEEeC--------
Q 004270 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---------VGCSLVKIVYHRV---NGLLATVAD-------- 535 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------~~~~i~~~~~s~~---~~~la~~~~-------- 535 (764)
...+|+|.|+|+++++-...+.|++++..+++...... .......++++|+ +..|.+...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 46799999999977765544578888765554332221 1245678999996 555555442
Q ss_pred -----CCeEEEEEccCC-------eEEE-Eeec-CCCCeeEEEEcCCCcEEEEEeCCC----------------------
Q 004270 536 -----DLVIRLFDVVAL-------RMVR-KFEG-HTDRITDFCFSEDGKWLLSSGMDG---------------------- 579 (764)
Q Consensus 536 -----d~~i~v~d~~~~-------~~~~-~~~~-h~~~i~~l~~s~dg~~l~s~s~dg---------------------- 579 (764)
...|.-++.... +.+. .+.. .......|+|.|||.+.++.+..+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~ 187 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQEL 187 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHH
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccc
Confidence 235555655321 1121 2221 123468999999999777755321
Q ss_pred --------cEEEEEcC-ccc-----------eEEEE-eeCCceEEEEEcCCCCeEEEEEeCCCeEEEEec
Q 004270 580 --------SLRIWDVI-LAR-----------QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (764)
Q Consensus 580 --------~i~iwd~~-~~~-----------~~~~~-~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~ 628 (764)
.=+||.+. +|+ ....+ .++.....++|.|+|++.++-+.....-.|.-+
T Consensus 188 ~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~~~~dein~i 257 (454)
T 1cru_A 188 NGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLI 257 (454)
T ss_dssp HTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSSSCEEEEEC
T ss_pred cccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCCCCCeEEEEe
Confidence 11344432 233 12222 345568999999998877765543322344444
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.37 E-value=0.21 Score=49.46 Aligned_cols=142 Identities=13% Similarity=0.031 Sum_probs=85.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeE-------ecCcceEEEEEeec---CCEEEEE-e--CCCeEEE
Q 004270 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-------EVGCSLVKIVYHRV---NGLLATV-A--DDLVIRL 541 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~i~~~~~s~~---~~~la~~-~--~d~~i~v 541 (764)
....+|+|.|+|+++++--..|.|++++..+++..... ........++++|+ +..|.+. + .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 45689999999997777665899999986655542211 12367789999995 4445443 2 3456666
Q ss_pred EEccCC----------eE-EEEeec-CCCCeeEEEEcCCCcEEEEEeC-------------CCcEEEEEcCccc------
Q 004270 542 FDVVAL----------RM-VRKFEG-HTDRITDFCFSEDGKWLLSSGM-------------DGSLRIWDVILAR------ 590 (764)
Q Consensus 542 ~d~~~~----------~~-~~~~~~-h~~~i~~l~~s~dg~~l~s~s~-------------dg~i~iwd~~~~~------ 590 (764)
|.+..+ +. +..+.. ....-..|+|.|||.+.++.+. -|.|.-.+.. |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~nP 190 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGNP 190 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTCS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCCC
Confidence 665541 22 222321 1123467999999987777542 2444434433 22
Q ss_pred --eEEEE-eeCCceEEEEEcCCCCeEEEEE
Q 004270 591 --QIDAI-HVDVSITALSLSPNMDVLATAH 617 (764)
Q Consensus 591 --~~~~~-~~~~~v~~l~~sp~g~~lat~~ 617 (764)
....+ .++.....++|+|+|++.++-.
T Consensus 191 f~~~~i~a~G~RNp~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 191 FPGSPVYSYGHRNVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp STTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred CCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence 01122 2455688999999988766554
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.29 E-value=0.2 Score=45.19 Aligned_cols=138 Identities=9% Similarity=-0.083 Sum_probs=82.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEecC--------cceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
..+..++|+|+|.+.+. .+|.+.-.+..+.+...-+... ..-.++.|.++|.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999886666 6777666665442211111111 22478899999998888 558887776532
Q ss_pred CeE-------EEEeecCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccce------EEEEe-eCC-ceEEEEEcCCCC
Q 004270 547 LRM-------VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ------IDAIH-VDV-SITALSLSPNMD 611 (764)
Q Consensus 547 ~~~-------~~~~~~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~------~~~~~-~~~-~v~~l~~sp~g~ 611 (764)
... ...-.+--..+..|.|.|+|.+.+.. |+.++-+.-+++.. ...+- ... .-.-+.|+++|.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 110 11111112468999999999876655 78765555553321 11111 111 245577999998
Q ss_pred eEEEEEeCC
Q 004270 612 VLATAHVDQ 620 (764)
Q Consensus 612 ~lat~~~d~ 620 (764)
..++. ++
T Consensus 195 l~~v~--~g 201 (236)
T 1tl2_A 195 LFGVQ--GG 201 (236)
T ss_dssp EEEEE--TT
T ss_pred EEEEe--CC
Confidence 88877 55
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.068 Score=52.60 Aligned_cols=113 Identities=9% Similarity=0.025 Sum_probs=73.8
Q ss_pred CCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEE---ECCCCCEEEEE-eCCCeEEEEECCCCCeeee
Q 004270 436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA---CDSTNTLMISA-GYHGDIKVWDFKGRDLKSR 511 (764)
Q Consensus 436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~ 511 (764)
+..+++++.||.|+-+|..+|+.+-.+... ...++.... ...++..++.. ..||.|..++..+|.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-------~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-------NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-------GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-------ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 357899999999999999999998887531 111111110 00123333333 5899999999888865544
Q ss_pred EecCcceE--EEEEe-----------ecCCEEEEEeCCCeEEEEEccCCeEEEEeec
Q 004270 512 WEVGCSLV--KIVYH-----------RVNGLLATVADDLVIRLFDVVALRMVRKFEG 555 (764)
Q Consensus 512 ~~~~~~i~--~~~~s-----------~~~~~la~~~~d~~i~v~d~~~~~~~~~~~~ 555 (764)
+.....+. -+... ..+..+++|+.+|.+...|+.+|+.+.++..
T Consensus 83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 44332111 01111 1467888999999999999999999888763
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.21 E-value=0.081 Score=47.68 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=86.1
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccc-cccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS-NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
..++.++|+|+|.+.++ .+|.++-.+..+.....-+.. .... ..+-. .-.++.|+|+|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 35669999999997777 888888777655332211110 0000 00111 1378999999987777 5698887775
Q ss_pred CCCCee------eeE-ecC-cceEEEEEeecCCEEEEEeCCCeEEEEEccCCe------EEEEee-cCCCCeeEEEEcCC
Q 004270 504 KGRDLK------SRW-EVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR------MVRKFE-GHTDRITDFCFSED 568 (764)
Q Consensus 504 ~~~~~~------~~~-~~~-~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~------~~~~~~-~h~~~i~~l~~s~d 568 (764)
.+.... ..+ ... ..+..+.+.|+|.+.|+. |+.++-....+.. ....+- +.-..-.-+.|.++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 332111 111 111 577999999999998888 6665433222111 011111 22233455779999
Q ss_pred CcEEEEEeCCCcEEEEEc
Q 004270 569 GKWLLSSGMDGSLRIWDV 586 (764)
Q Consensus 569 g~~l~s~s~dg~i~iwd~ 586 (764)
|.+.+.. ++ ++|..
T Consensus 193 G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 193 GTLFGVQ--GG--KFYED 206 (236)
T ss_dssp SCEEEEE--TT--EEEEE
T ss_pred CcEEEEe--CC--eEEec
Confidence 8876655 66 44443
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.15 E-value=0.53 Score=46.27 Aligned_cols=220 Identities=8% Similarity=0.029 Sum_probs=102.8
Q ss_pred cEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEE--EcCC
Q 004270 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ----EG-------SLQLWNISTKKKLYE--FKGW 180 (764)
Q Consensus 114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~--~~~h 180 (764)
.+.+||..+.+-.. .............+...++ ..++.|+. ++ .+..||..+.+-... +...
T Consensus 25 ~~~~yd~~~~~W~~---~~~~~~~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 99 (318)
T 2woz_A 25 AAVAYDPMENECYL---TALAEQIPRNHSSIVTQQN--QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA 99 (318)
T ss_dssp EEEEEETTTTEEEE---EEECTTSCSSEEEEECSSS--CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC
T ss_pred ceEEECCCCCceec---ccCCccCCccceEEEEECC--EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc
Confidence 37788887766421 1122112222333344455 45666662 11 177888876643221 1111
Q ss_pred CCCeEEEEEcCCCCEEEEEEcC-------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeC------CC
Q 004270 181 GSSISSCVSSPALDVVAVGCSD-------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS------SG 247 (764)
Q Consensus 181 ~~~i~~~~~sp~~~~la~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~------dg 247 (764)
......+.+ ++.+++.|+.+ ..+.+||..+.+-...-.......-.+++ ..++. +++.|+. ..
T Consensus 100 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~-iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 100 RCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI-SHNGM-IYCLGGKTDDKKCTN 175 (318)
T ss_dssp BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE-EETTE-EEEECCEESSSCBCC
T ss_pred ccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE-EECCE-EEEEcCCCCCCCccc
Confidence 111122222 56677777754 35788888776533221111011011222 24666 6666653 24
Q ss_pred cEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCC-----cEEEEEecCCCCCceeeEeccCCCCCCeeEEE
Q 004270 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (764)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (764)
.+.+||+.+.+-...-.......-.++.. -++.+++.|+.++ .+.+||. ....+..+..+....... ++..
T Consensus 176 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~r~~~-~~~~ 251 (318)
T 2woz_A 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDL--KTNKWEVMTEFPQERSSI-SLVS 251 (318)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEET--TTCCEEECCCCSSCCBSC-EEEE
T ss_pred eEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEEC--CCCeEEECCCCCCcccce-EEEE
Confidence 68999998875433221111111112222 2566777776543 3445544 443444433322211111 2222
Q ss_pred ecCCCEEEEEeCC--------------CcEEEEEeeccc
Q 004270 323 YANGRHILSAGQD--------------RAFRLFSVIQDQ 347 (764)
Q Consensus 323 ~~~~~~l~s~~~d--------------g~i~i~d~~~~~ 347 (764)
-+++.++.|+.+ ..+.+||+.+.+
T Consensus 252 -~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 -LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp -ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred -ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 256677777653 346677765543
No 340
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.10 E-value=0.38 Score=47.08 Aligned_cols=225 Identities=11% Similarity=0.079 Sum_probs=111.7
Q ss_pred CCeEEEEEEe----CCeEEEEecCCCeEEEecCC-CCcceEEEEEeCCeEEEEECC-----------eEEEEecCceE-E
Q 004270 25 GTENFVTVSV----GKAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYGN-----------HIAVVKRAHQV-A 87 (764)
Q Consensus 25 ~~~~~~~~~~----~~~i~iwd~~~~~~~~~~~~-~~~~I~~~~~~~~~~~~a~g~-----------~i~vw~~~~~~-~ 87 (764)
++..++.++. -+.+.+||..+.+-...... .+..=.+++...+..|+..|. .+.+||..+.. .
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 4455555553 24689999998876554321 122223445556666665543 27888864332 2
Q ss_pred E---ecccccceEEEEEeCCEEEEEecC-----CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC
Q 004270 88 T---WSRHSAKVNLLLLFGEHILSIDID-----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ 159 (764)
Q Consensus 88 ~---~~~h~~~v~~l~~~g~~l~s~~~d-----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~ 159 (764)
. +......-..+..++..++.|+.+ ..+.+||..+.+-.. +..+... .....++.. ++ ..++.|+.
T Consensus 104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~-r~~~~~~~~-~~--~iyv~GG~ 177 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL--VAPMLTR-RIGVGVAVL-NR--LLYAVGGF 177 (308)
T ss_dssp ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE--CCCCSSC-CBSCEEEEE-TT--EEEEECCB
T ss_pred ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeE--CCCCCcc-ccceEEEEE-CC--EEEEEeCC
Confidence 2 111122222333466666665543 358888887765421 1111111 111222222 34 34555554
Q ss_pred C-----CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCE
Q 004270 160 E-----GSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAV 227 (764)
Q Consensus 160 d-----g~i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v 227 (764)
+ ..+.+||+.+.+-... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-.......-
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 3 4588999877643221 1111111222222 56777777654 5689999887653221111111111
Q ss_pred EEEEEeeCCCCEEEEEeCC-----CcEEEEECCCcee
Q 004270 228 TALAFSSDGQPLLASGASS-----GVISIWNLEKRRL 259 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~~d-----g~i~iwd~~~~~~ 259 (764)
.+++. -+++ +++.|+.+ ..+.+||+++.+-
T Consensus 256 ~~~~~-~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 256 LGITV-HQGR-IYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CEEEE-ETTE-EEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred eEEEE-ECCE-EEEEcCcCCCcccceEEEEcCCCCEE
Confidence 12222 2555 77777643 4577888776643
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.09 E-value=0.58 Score=46.92 Aligned_cols=141 Identities=9% Similarity=0.058 Sum_probs=64.7
Q ss_pred CeEEEEEccCCceEEEEeccCCCCE-EEEEEeeCCCCEEEEEeC------CCcEEEEEC--CCceeeeeeec-ccccCee
Q 004270 203 GKIHVHNVRYDEELVTFTHSMRGAV-TALAFSSDGQPLLASGAS------SGVISIWNL--EKRRLQSVIRE-AHDNAII 272 (764)
Q Consensus 203 g~i~iwd~~~~~~~~~~~~~~~~~v-~~l~fs~d~~~~l~sg~~------dg~i~iwd~--~~~~~~~~~~~-~h~~~v~ 272 (764)
..+.+||..+.+-...-.......- .+++.. ++. +++.|+. ...+.+||+ .+.+-...-.. .......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDK-TWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTE-EEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCE-EEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 5789999887753332222211111 233332 555 6666653 346777887 44432221110 0111111
Q ss_pred EEEEecCCCEEEEEcCC----------------------CcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEE
Q 004270 273 SLHFFANEPVLMSASAD----------------------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (764)
Q Consensus 273 ~l~~~~~~~~l~s~~~d----------------------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 330 (764)
..+...++.+++.|+.+ ..+.+||++. ..+..+..+......-. +..-+++.++
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~--~~~~~~~i~v 321 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN--GKWDKSGELSQGRAYGV--SLPWNNSLLI 321 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSE--EEEETTEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC--CceeeCCCCCCCcccce--eEEeCCEEEE
Confidence 11223366677777632 1455666553 34455544433222222 2334778888
Q ss_pred EEeCCC------cEEEEEeeccccc
Q 004270 331 SAGQDR------AFRLFSVIQDQQS 349 (764)
Q Consensus 331 s~~~dg------~i~i~d~~~~~~~ 349 (764)
.||.++ .+.++++.+++..
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 888653 2445566655443
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.07 E-value=1.2 Score=43.32 Aligned_cols=136 Identities=6% Similarity=0.078 Sum_probs=73.8
Q ss_pred cCCCCEEEEEEc--CCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCC-------------CcEEEEEC
Q 004270 190 SPALDVVAVGCS--DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-------------GVISIWNL 254 (764)
Q Consensus 190 sp~~~~la~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~d-------------g~i~iwd~ 254 (764)
++++.+|..... ++.|...+.. |.....+... .+--++++|..+..+...+ ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~-----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND-----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE-----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC-----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 345666665542 4555555543 3334444332 1334578888455554433 46788888
Q ss_pred CCceeeeeeecccccCeeEEEEecCCCEEEEEc--CCCcEEEEEecCCCCCceeeEeccCCCCCCeeEEEecCCCEEEEE
Q 004270 255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (764)
Q Consensus 255 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (764)
..++...... . .+..|++++..|+-.. .++.-.||.++......+.+. .+.. .+++++++.|+-.
T Consensus 96 dg~~~~~l~~----~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt---~~~~----~~~~~~g~~iy~t 162 (302)
T 3s25_A 96 NGHGSTVLDP----D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK---NHYL----FTCNTSDRYFYYN 162 (302)
T ss_dssp TSCCCEEEEC----S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE---SSCC----CCSEEETTEEEEE
T ss_pred CCCcceEeec----C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe---CCCc----eEeeEECCEEEEE
Confidence 7665333222 1 1236778888888776 456666776665543333322 2222 3457778888766
Q ss_pred eC-CCcEEEEEee
Q 004270 333 GQ-DRAFRLFSVI 344 (764)
Q Consensus 333 ~~-dg~i~i~d~~ 344 (764)
+. ...|...++.
T Consensus 163 ~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 163 NPKNGQLYRYDTA 175 (302)
T ss_dssp CTTTCCEEEEETT
T ss_pred eCCCceEEEEECC
Confidence 54 4555555543
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.07 E-value=1.2 Score=43.77 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=104.3
Q ss_pred CCeEEEEecCCCeEEEec-C-CCCcceEEEEEeCCeEEEEECC---------e----EEEEecCceE-EEe---cccccc
Q 004270 35 GKAFHIYNCAKLNLVLVG-P-QLPKKIRALASYRDYTFAAYGN---------H----IAVVKRAHQV-ATW---SRHSAK 95 (764)
Q Consensus 35 ~~~i~iwd~~~~~~~~~~-~-~~~~~I~~~~~~~~~~~~a~g~---------~----i~vw~~~~~~-~~~---~~h~~~ 95 (764)
+..+..||..+.+-.... + ..+..-.+++...+.+|+..|. . +.+||..... ..+ ......
T Consensus 23 G~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 23 DTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 356899999987754422 1 1233344555556677776662 1 6667753321 221 111122
Q ss_pred eEEEEEeCCEEEEEecC-------CcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeC------CCc
Q 004270 96 VNLLLLFGEHILSIDID-------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ------EGS 162 (764)
Q Consensus 96 v~~l~~~g~~l~s~~~d-------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~------dg~ 162 (764)
-.....++..++.|+.+ ..+.++|..+.+-.. +..+ ........+...++ ..++.|+. -..
T Consensus 103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--~~~~--p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE--VKNL--PIKVYGHNVISHNG--MIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE--ECCC--SSCEESCEEEEETT--EEEEECCEESSSCBCCC
T ss_pred cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeE--CCCC--CCcccccEEEEECC--EEEEEcCCCCCCCccce
Confidence 22333466666666654 237777877655321 1111 11111122222344 34455543 235
Q ss_pred EEEEeCCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEccCCceEEEEeccCCCCEEEEEEeeC
Q 004270 163 LQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD 235 (764)
Q Consensus 163 i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d 235 (764)
+.+||+.+.+-... +....... +++. -++++++.|+.+ ..+.+||+.+++-...-.......-.+++ .-+
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~ 253 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLA 253 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EET
T ss_pred EEEEcCCCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EEC
Confidence 89999887653222 11111111 2222 256777777643 35778888776532211111111111222 234
Q ss_pred CCCEEEEEeCC--------------CcEEEEECCCceee
Q 004270 236 GQPLLASGASS--------------GVISIWNLEKRRLQ 260 (764)
Q Consensus 236 ~~~~l~sg~~d--------------g~i~iwd~~~~~~~ 260 (764)
+. +++.|+.+ ..+.+||+.+.+-.
T Consensus 254 ~~-i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 254 GS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp TE-EEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred CE-EEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 55 67776643 35777777766443
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.88 E-value=0.22 Score=50.17 Aligned_cols=220 Identities=11% Similarity=0.015 Sum_probs=105.7
Q ss_pred eeEeeeCCceEEEEEccceeecceeecCCC-CCCCCeEEEEEccCCCEEEEEec-C---------CcEEEEECcCCcccc
Q 004270 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCP-ENPTAVKACTISACGNFAVLGTA-G---------GWIERFNLQSGISRG 460 (764)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~-~---------g~i~i~~~~~~~~~~ 460 (764)
.+.++.....+..+|.......-..+...+ .......++.+ +++.++.|+. + ..+.+||..+..-..
T Consensus 23 yv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~ 100 (357)
T 2uvk_A 23 YIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK 100 (357)
T ss_dssp EEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEE
T ss_pred EEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEE
Confidence 344445556788888764211112222222 11222223333 5677777765 2 468899988765332
Q ss_pred eecCccccccccccCcEEEEEECCCCCEEEEEeCC---------------------------------------CeEEEE
Q 004270 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH---------------------------------------GDIKVW 501 (764)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---------------------------------------g~v~iw 501 (764)
.-... + ........+. .++++++.|+.+ ..+.+|
T Consensus 101 ~~~~~-p----~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 101 LMSHA-P----MGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp CSCCC-S----SCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CCCCC-C----cccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 21110 0 0111112222 467777888754 478899
Q ss_pred ECCCCCeeeeEecCc--ceEEEEEeecCCEEEEEeC------CCeEEEEEc--cCCeE--EEEeecCCCCeeEEEEcCCC
Q 004270 502 DFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVAD------DLVIRLFDV--VALRM--VRKFEGHTDRITDFCFSEDG 569 (764)
Q Consensus 502 d~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~------d~~i~v~d~--~~~~~--~~~~~~h~~~i~~l~~s~dg 569 (764)
|..+.+-...-.... .-...+..-++++++.|+. ...+.+||+ .+.+- +..+..........+...++
T Consensus 174 d~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp ETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred eCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 988775443332221 1102222235666677653 346777877 43322 21221111222222333467
Q ss_pred cEEEEEeCC----------------------CcEEEEEcCccceEEEEeeCCc-eEEEEEcCCCCeEEEEEeCC
Q 004270 570 KWLLSSGMD----------------------GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQ 620 (764)
Q Consensus 570 ~~l~s~s~d----------------------g~i~iwd~~~~~~~~~~~~~~~-v~~l~~sp~g~~lat~~~d~ 620 (764)
++++.|+.+ ..+.+||+.+.+....-..+.+ ....+...++++++.++.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECG
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCC
Confidence 777777632 2578899887654433222222 11122234778888888654
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.55 E-value=0.91 Score=47.08 Aligned_cols=190 Identities=12% Similarity=0.158 Sum_probs=117.5
Q ss_pred cCCCEEEEEe-cCCcEEEEECcCCcccceecCccccccccccCcEEEEEEC--CCCCEEEEEeC-------CCeE-----
Q 004270 434 ACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD--STNTLMISAGY-------HGDI----- 498 (764)
Q Consensus 434 ~~g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~-------dg~v----- 498 (764)
.||+++++.. .+.+|...++...+.-..+. ......+.++.+- |+-.+++.++. ||..
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~-------iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~ 212 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMIT-------VPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQD 212 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEE-------CTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTS
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEe-------CCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCC
Confidence 4788988887 45688888988776655554 2455667777775 56677777663 2221
Q ss_pred -------EEEECCCCCeeeeEecCcceEEEEEeecCCEEEEEeCCC---------------eEEEEEccC-------Ce-
Q 004270 499 -------KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---------------VIRLFDVVA-------LR- 548 (764)
Q Consensus 499 -------~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---------------~i~v~d~~~-------~~- 548 (764)
...|..+.+....+........+...+++++.++.+.+. .+.++++.. |+
T Consensus 213 ~~~y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~ 292 (638)
T 3sbq_A 213 ENSYTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDF 292 (638)
T ss_dssp TTEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCC
T ss_pred hhhceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCe
Confidence 112333334433333444555566677778777766431 345555321 00
Q ss_pred ------EEEEeecC---------------CCCeeEEEEcCCCcEEEEEe-CCCcEEEEEcCcc------c-------eEE
Q 004270 549 ------MVRKFEGH---------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA------R-------QID 593 (764)
Q Consensus 549 ------~~~~~~~h---------------~~~i~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~------~-------~~~ 593 (764)
-+..+.+. ......+.++|||++++.++ .+.++.|+|+..- + .+.
T Consensus 293 ~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a 372 (638)
T 3sbq_A 293 ITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG 372 (638)
T ss_dssp BCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred EEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence 01122221 12345678999999998776 6789999998842 2 134
Q ss_pred EEeeCCceEEEEEcCCCCeEEEEEeCCCeEEEEecccc
Q 004270 594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631 (764)
Q Consensus 594 ~~~~~~~v~~l~~sp~g~~lat~~~d~~~i~lW~~~~~ 631 (764)
...........+|.++|.-..|--.|+ .|.-|++...
T Consensus 373 e~e~GlGPlHt~Fd~~G~aYTtlfidS-qvvkWni~~a 409 (638)
T 3sbq_A 373 EPELGLGPLHTTFDGRGNAYTTLFIDS-QVVKWNMEEA 409 (638)
T ss_dssp CCBCCSCEEEEEECSSSEEEEEETTTT-EEEEEEHHHH
T ss_pred eccCCCcccEEEECCCCceEeeeeecc-eEEEEeccHH
Confidence 445555689999999995444555788 5999999764
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.50 E-value=0.51 Score=49.01 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=63.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCC---CCEEEEEeC-------
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST---NTLMISAGY------- 494 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~------- 494 (764)
.....+++.|+|+++++-...+.|.+++..++......................+|+++|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 5678999999999766654445799888765543221110000000013467889999995 444544432
Q ss_pred ------CCeEEEEECCCC--Ce-----ee-eEec--CcceEEEEEeecCCEEEEEeC
Q 004270 495 ------HGDIKVWDFKGR--DL-----KS-RWEV--GCSLVKIVYHRVNGLLATVAD 535 (764)
Q Consensus 495 ------dg~v~iwd~~~~--~~-----~~-~~~~--~~~i~~~~~s~~~~~la~~~~ 535 (764)
...|.-+++... +. +. .+.. ......++|.|||.+.++.++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235555655432 11 11 1111 145788999999987776543
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.86 E-value=1.1 Score=43.03 Aligned_cols=214 Identities=12% Similarity=0.085 Sum_probs=118.6
Q ss_pred CCeEEEEEEeCCeEEEEecCCCeEEEecCCCCcceEEEEEeCCeEEEEECCeEEEEecCc--eEEEecccccceEEEEEe
Q 004270 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAH--QVATWSRHSAKVNLLLLF 102 (764)
Q Consensus 25 ~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~~~~~~~~~~~a~g~~i~vw~~~~--~~~~~~~h~~~v~~l~~~ 102 (764)
+..+.+... ++.+..|-.....++-+.......|..++...+..++...++|+.|-.+. ++.....-...|..++.-
T Consensus 32 G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G 110 (282)
T 3qhy_B 32 GYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAG 110 (282)
T ss_dssp CSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGGSSSEEEEEEE
T ss_pred CCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCcccCCCeEEEECc
Confidence 344444445 89999998776443333323345789999888877776777799996432 122211223578889888
Q ss_pred CCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Q 004270 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS 182 (764)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 182 (764)
..+.+... ||.|..|-.........+.. ....+..+ +... ...+.-. +|.|..|-......+..-..-..
T Consensus 111 ~~hs~al~-~G~v~~wG~n~~gqlg~~~~----~~~~i~~i--~~G~--~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~ 180 (282)
T 3qhy_B 111 AWASYALK-DGKVIAWGDDSDGQTTVPAE----AQSGVTAL--DGGV--YTALAVK-NGGVIAWGDNYFGQTTVPAEAQS 180 (282)
T ss_dssp TTEEEEEE-TTEEEEEECCTTSTTSCCGG----GGSSEEEE--EECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGS
T ss_pred CCEEEEEe-CCeEEEecCCCCCcCCCCcc----CCCCeEEE--Eccc--CEEEEEE-CCEEEEecCCCCCCCCCceecCC
Confidence 88888888 99999997765332111111 01112222 2222 2233334 78888886543211111111134
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCc
Q 004270 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (764)
Q Consensus 183 ~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~ 257 (764)
.|..++..... .++. .||.|..|-......+.. .......|..++-.... .++.. ||.|..|=....
T Consensus 181 ~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h--~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 181 GVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWY--SLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp SEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSC--EEEEE--TTEEEEESTTCC
T ss_pred CeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCCE--EEEEE--CCEEEEecCCCC
Confidence 57777666543 3444 589999997553322211 11112356666654332 34433 899999975544
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.65 E-value=1.6 Score=41.87 Aligned_cols=219 Identities=13% Similarity=0.082 Sum_probs=118.5
Q ss_pred CcceEEEEEeCCeEEEEECCeEEEEecCc--eEEEecccccceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeE
Q 004270 56 PKKIRALASYRDYTFAAYGNHIAVVKRAH--QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHV 133 (764)
Q Consensus 56 ~~~I~~~~~~~~~~~~a~g~~i~vw~~~~--~~~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~ 133 (764)
...|..++......++...+.|+.|-.+. ++.........|..++.-..+.+... ||.|..|-....-..-.|...
T Consensus 23 ~~~i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~- 100 (282)
T 3qhy_B 23 QSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEA- 100 (282)
T ss_dssp SSSCCEEEECSSEEEEEETTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGG-
T ss_pred cCCCcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCccc-
Confidence 45789999888877766677799996432 12222223447888888777766665 999999987654332111110
Q ss_pred ecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC
Q 004270 134 KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213 (764)
Q Consensus 134 ~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~ 213 (764)
...+..++... ...+.-. +|.|+.|-....-.+-........|..++....- .++. . ||.|..|-....
T Consensus 101 ---~~~v~~ia~G~----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~l-~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 101 ---RSGVDAIAAGA----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALAV-K-NGGVIAWGDNYF 169 (282)
T ss_dssp ---SSSEEEEEEET----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E-TTEEEEEECCTT
T ss_pred ---CCCeEEEECcC----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEEE-E-CCEEEEecCCCC
Confidence 11223333332 2344445 8999999654321111111123456666665443 2332 3 788988876532
Q ss_pred ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEE
Q 004270 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~ 293 (764)
..+. ........|..++-..+. .++. .+|.|..|=......+..-. .....|..++..... .++.. ||.+.
T Consensus 170 gqlg-~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h-~~al~--~g~v~ 240 (282)
T 3qhy_B 170 GQTT-VPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWY-SLALK--NGKVI 240 (282)
T ss_dssp STTS-CCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSC-EEEEE--TTEEE
T ss_pred CCCC-CceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCE-EEEEE--CCEEE
Confidence 2221 111113457777654432 3444 48999999755432222111 123457777655443 33333 88898
Q ss_pred EEE
Q 004270 294 MWI 296 (764)
Q Consensus 294 vw~ 296 (764)
.|=
T Consensus 241 ~wG 243 (282)
T 3qhy_B 241 AWG 243 (282)
T ss_dssp EES
T ss_pred Eec
Confidence 884
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.88 E-value=1.7 Score=48.07 Aligned_cols=184 Identities=13% Similarity=0.069 Sum_probs=97.0
Q ss_pred EEEEEccCCCEEEEEecCC------cEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCC--eEE
Q 004270 428 KACTISACGNFAVLGTAGG------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--DIK 499 (764)
Q Consensus 428 ~~~~~s~~g~~l~~g~~~g------~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~v~ 499 (764)
..+.+..+++.++.|+.++ .+.+||..+..-...-.. +.....| +.+.-.++++++.||.++ .+.
T Consensus 444 s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~--p~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v~ 516 (695)
T 2zwa_A 444 TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL--SHTRFRH-----SACSLPDGNVLILGGVTEGPAML 516 (695)
T ss_dssp EEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC--SBCCBSC-----EEEECTTSCEEEECCBCSSCSEE
T ss_pred EEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC--CCCcccc-----eEEEEcCCEEEEECCCCCCCCEE
Confidence 3344433777888887543 578899887543322110 0000122 223323788888888654 689
Q ss_pred EEECCCCCeeeeEe---c--C-cceEEEEEeec-CCEEEEEeC--C-----CeEEEEEccCCeE-----EEEeec--CCC
Q 004270 500 VWDFKGRDLKSRWE---V--G-CSLVKIVYHRV-NGLLATVAD--D-----LVIRLFDVVALRM-----VRKFEG--HTD 558 (764)
Q Consensus 500 iwd~~~~~~~~~~~---~--~-~~i~~~~~s~~-~~~la~~~~--d-----~~i~v~d~~~~~~-----~~~~~~--h~~ 558 (764)
+||..+.+-...-. . . ....++.+..+ +++++.|+. + ..+.+||+.+.+- -..+.. ...
T Consensus 517 ~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~ 596 (695)
T 2zwa_A 517 LYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQ 596 (695)
T ss_dssp EEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGC
T ss_pred EEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCC
Confidence 99988765332221 1 1 22233555544 667777765 2 4689999887761 122211 111
Q ss_pred Ce-eEEEEcCCCcEEEEEeCC--------CcEEEEEcCccceEEEEeeCCce----------EEEEEcCCCCeEEEEEeC
Q 004270 559 RI-TDFCFSEDGKWLLSSGMD--------GSLRIWDVILARQIDAIHVDVSI----------TALSLSPNMDVLATAHVD 619 (764)
Q Consensus 559 ~i-~~l~~s~dg~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~v----------~~l~~sp~g~~lat~~~d 619 (764)
+. .+++...++++++.|+.+ ..|.+||+.+++.. ....+... .+.+..++|++++.||..
T Consensus 597 R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp CBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred cccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 11 123333347888888743 46999999887654 22221111 334444566777777643
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.42 E-value=5.5 Score=43.93 Aligned_cols=196 Identities=10% Similarity=0.100 Sum_probs=98.6
Q ss_pred CEEEEEeCC----CcEEEEeCCCCeEEEEE-c-------CCCCCeEEEEEcCCCCEEEEEEcC------CeEEEEEccCC
Q 004270 152 NKVIVGSQE----GSLQLWNISTKKKLYEF-K-------GWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYD 213 (764)
Q Consensus 152 ~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-------~h~~~i~~~~~sp~~~~la~g~~d------g~i~iwd~~~~ 213 (764)
..++.|+.+ +.+.+||..+++-...- . .....-.++.+..++.+++.|+.+ ..+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 455666543 46888998776533322 1 111122233333277778887754 35788888875
Q ss_pred ceEEEEeccCCCCEEEEEEeeCCCCEEEEEeCCC--cEEEEECCCceeeeeeec----ccccCeeEEEEecC-CCEEEEE
Q 004270 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSG--VISIWNLEKRRLQSVIRE----AHDNAIISLHFFAN-EPVLMSA 286 (764)
Q Consensus 214 ~~~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~l~s~ 286 (764)
+-...-.......-.+++...++. +++.|+.++ .+.+||..+.+-...-.. .....-.++.+..+ +.+++.|
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G 557 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG 557 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC
T ss_pred cEEECCCCCCCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC
Confidence 432211111111112233323666 778877544 799999988754332210 11112233555555 5667777
Q ss_pred cC--C-----CcEEEEEecCCCC----CceeeEeccCCCCCCeeEEEecCCCEEEEEeC--------CCcEEEEEeeccc
Q 004270 287 SA--D-----NSIKMWIFDTTDG----DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ--------DRAFRLFSVIQDQ 347 (764)
Q Consensus 287 ~~--d-----~~i~vw~~~~~~~----~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~--------dg~i~i~d~~~~~ 347 (764)
|. + +.+.+||+..... .+..+.........-.++....+++.++.||. ...+.+||+.+..
T Consensus 558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 65 2 3466777665531 02222221111111123334444777777774 3458888877654
Q ss_pred c
Q 004270 348 Q 348 (764)
Q Consensus 348 ~ 348 (764)
-
T Consensus 638 W 638 (695)
T 2zwa_A 638 L 638 (695)
T ss_dssp E
T ss_pred E
Confidence 3
No 351
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=91.79 E-value=9 Score=36.34 Aligned_cols=187 Identities=12% Similarity=0.037 Sum_probs=111.9
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEC---cCCcccceecCccccccccccCcEEEEEECC-CCCEEEEEeCCCeEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNL---QSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKV 500 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~i 500 (764)
..+..+.......+++.-++.|.++.... ..+.... + ......|..+.... +...++..+.+|.++.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--------l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--------KSREEKIVGAFIREKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--------SSTTCCEEEEEEGGGSCSEEEEEETTSEEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--------CCCCCEEEEEECCcCCCCEEEEEeCCCEEEE
Confidence 55666666666677888888998776543 3221111 1 13345666665421 4678999999999999
Q ss_pred EECCCCC------eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE---------EEEeecCCCCeeEEEE
Q 004270 501 WDFKGRD------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM---------VRKFEGHTDRITDFCF 565 (764)
Q Consensus 501 wd~~~~~------~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~---------~~~~~~h~~~i~~l~~ 565 (764)
..+..-. ....+.....+..+........++..+..|.+..++...-.. .-.+.. ...|..+..
T Consensus 95 ~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~ 173 (276)
T 3no0_A 95 IPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRI 173 (276)
T ss_dssp EEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEE
T ss_pred EEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEE
Confidence 9875432 122233346666666666677899999999999888653221 112322 355666665
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCcc-------ceEEEEeeCCceEEEEEcCCCCeEEEEEeCCC
Q 004270 566 SEDGKWLLSSGMDGSLRIWDVILA-------RQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (764)
Q Consensus 566 s~dg~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~v~~l~~sp~g~~lat~~~d~~ 621 (764)
.+++.+|+..+..|.++...+..- +-+..+.....+..+....+.+.++..+.++.
T Consensus 174 ~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~ 236 (276)
T 3no0_A 174 WNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGK 236 (276)
T ss_dssp ESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSC
T ss_pred eCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCe
Confidence 566778888999999999887532 22222222223444433333345555555664
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.67 E-value=24 Score=36.37 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=60.9
Q ss_pred CCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce---eeeeee----c----ccccCeeEEEEecC----CCEEEEEcC-
Q 004270 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIR----E----AHDNAIISLHFFAN----EPVLMSASA- 288 (764)
Q Consensus 225 ~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~----~----~h~~~v~~l~~~~~----~~~l~s~~~- 288 (764)
.....|+|.|||...|+++...|.|++++..... .+..+. . ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568999999985224445678999999754321 111111 0 11457889999996 333333221
Q ss_pred -C----------CcEEEEEecCCC-C-----CceeeEecc--CCCCCCeeEEEecCCCEEEEEeCCC
Q 004270 289 -D----------NSIKMWIFDTTD-G-----DPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDR 336 (764)
Q Consensus 289 -d----------~~i~vw~~~~~~-~-----~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg 336 (764)
+ ..|.-|.+.... . ..+.+.... .....-..|+|.|||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 133335443211 0 112222221 2223457899999998777766544
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.53 E-value=24 Score=35.06 Aligned_cols=138 Identities=8% Similarity=0.037 Sum_probs=86.9
Q ss_pred eEEEEECCCC--CeeeeEecC-------cceEEEEEe---ec----CCEEEEEe-CCCeEEEEEccCCeEEEEeecC---
Q 004270 497 DIKVWDFKGR--DLKSRWEVG-------CSLVKIVYH---RV----NGLLATVA-DDLVIRLFDVVALRMVRKFEGH--- 556 (764)
Q Consensus 497 ~v~iwd~~~~--~~~~~~~~~-------~~i~~~~~s---~~----~~~la~~~-~d~~i~v~d~~~~~~~~~~~~h--- 556 (764)
.|.+||+.+. +.++++... +.+..+++. +. +.++..+. ..+.|.|+|+.+++.-+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667888888 887777653 446777777 22 33444443 4678999999998776655210
Q ss_pred ---------------CCCeeEEEEcCC----CcEEEEEeCCCcEEEEEcCc-----c---ceEEEEeeC---CceEEEEE
Q 004270 557 ---------------TDRITDFCFSED----GKWLLSSGMDGSLRIWDVIL-----A---RQIDAIHVD---VSITALSL 606 (764)
Q Consensus 557 ---------------~~~i~~l~~s~d----g~~l~s~s~dg~i~iwd~~~-----~---~~~~~~~~~---~~v~~l~~ 606 (764)
...|..|++||+ +++|.-....+ -++|.+++ . ..+..+... +.-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 136888999998 78888776655 35565543 1 222323222 22456677
Q ss_pred c-CCCCeEEEEEeCCCeEEEEeccc-ccCCCC
Q 004270 607 S-PNMDVLATAHVDQNGVYLWVNRC-MFSGDS 636 (764)
Q Consensus 607 s-p~g~~lat~~~d~~~i~lW~~~~-~~~~~~ 636 (764)
. .+|.++++- .+...|..|+.+. .|.+..
T Consensus 283 D~~~G~ly~~~-~~~~aI~~w~~~~~~~~~~n 313 (381)
T 3q6k_A 283 DPKTKVIFFAE-ANTKQVSCWNTQKMPLRMKN 313 (381)
T ss_dssp CTTTCEEEEEE-SSSSEEEEEETTSCSBCGGG
T ss_pred eCCCCeEEEEe-ccCCeEEEEeCCCCccccCc
Confidence 6 566555444 4444799999987 776544
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.49 E-value=22 Score=34.59 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=89.4
Q ss_pred CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC--CCC-----
Q 004270 435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK--GRD----- 507 (764)
Q Consensus 435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~----- 507 (764)
+..+++..+.+|.++...+..-..... .......+.. ...+..+........++..+..|.+..+... .-.
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence 578999999999999988765332211 0000001112 4456555555556678888889998888776 221
Q ss_pred ----eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE-------EEEee--cCCCCeeEEEEcCCCcEEEE
Q 004270 508 ----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-------VRKFE--GHTDRITDFCFSEDGKWLLS 574 (764)
Q Consensus 508 ----~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~-------~~~~~--~h~~~i~~l~~s~dg~~l~s 574 (764)
....+.....|.++...+++..++..+..|.++.-.+..... +..+. .-.+.+..+....+...++.
T Consensus 186 a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 186 TSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp SBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 112233346677777777778999999999999888654322 11121 11233444443333445555
Q ss_pred EeCCCcEEEEEcC
Q 004270 575 SGMDGSLRIWDVI 587 (764)
Q Consensus 575 ~s~dg~i~iwd~~ 587 (764)
.+.+|.+.-+++.
T Consensus 266 ~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 266 VTSGGGVIRTAAR 278 (327)
T ss_dssp EEGGGCEEEEEGG
T ss_pred EcCCCeEEEEehh
Confidence 6666766666654
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.14 E-value=30 Score=35.69 Aligned_cols=29 Identities=7% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCCeeEEEecCCC-EEEEEeCCCcEEEEEe
Q 004270 315 APPLCIRFYANGR-HILSAGQDRAFRLFSV 343 (764)
Q Consensus 315 ~~v~~i~~~~~~~-~l~s~~~dg~i~i~d~ 343 (764)
..+..|+|.|||. .++++...|.|++++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 4567899999986 5666678898888863
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=86.43 E-value=43 Score=36.79 Aligned_cols=94 Identities=5% Similarity=0.025 Sum_probs=55.2
Q ss_pred cCCcEEEEECcCCcc-------cce-ecCccccccccccCcEEEEEECCCCCEEEEEeCCCe--EEEEECCCCC-eeee-
Q 004270 444 AGGWIERFNLQSGIS-------RGS-YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD--IKVWDFKGRD-LKSR- 511 (764)
Q Consensus 444 ~~g~i~i~~~~~~~~-------~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~--v~iwd~~~~~-~~~~- 511 (764)
..+.|...++.++.. ... +. ......+..+.+..+ .++++...++. +.++++.+++ ....
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~ 389 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFT-------PTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVV 389 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEEC-------CCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEE
T ss_pred CCCeEEEEECCcccccccccccceEEEC-------CCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEec
Confidence 467788888876421 111 21 133456788888865 57777777765 6677766664 2233
Q ss_pred EecC--cceEEEEEeecCCEEEE-EeC---CCeEEEEEcc
Q 004270 512 WEVG--CSLVKIVYHRVNGLLAT-VAD---DLVIRLFDVV 545 (764)
Q Consensus 512 ~~~~--~~i~~~~~s~~~~~la~-~~~---d~~i~v~d~~ 545 (764)
+... ..+.....++++..++. .+. -+.+..+|+.
T Consensus 390 i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 390 LKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred cCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 3332 45655666666654443 332 3678888876
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.82 E-value=27 Score=33.96 Aligned_cols=190 Identities=14% Similarity=0.115 Sum_probs=114.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEC---cCC------cccceecCccccccccccCcEEEEEECC---CCCEEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNL---QSG------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISA 492 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~---~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~ 492 (764)
..+..+........++.-++.|.++.... ..+ .++..+. . ......|.++..-+ +..+++..
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l-----~-l~~~e~i~~~~~~~~~~~e~~~v~~ 115 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLL-----A-FQPEERIAQVIQIRGYTDAPYLVLA 115 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHT-----T-CCTTCCEEEEEEESSTTSSSEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHcc-----C-CCCCCEEEEEEEeccCCCCCEEEEE
Confidence 45666666777788888889998776653 222 1111111 0 12334555554333 57899999
Q ss_pred eCCCeEEEEECCCCC-------eeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEcc--CCeE---------EEEee
Q 004270 493 GYHGDIKVWDFKGRD-------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRM---------VRKFE 554 (764)
Q Consensus 493 ~~dg~v~iwd~~~~~-------~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~--~~~~---------~~~~~ 554 (764)
+.+|.++.-.+..-. ....+.....+..+........++..+..|.+..+... .-.. .-.+.
T Consensus 116 T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~ 195 (327)
T 3uc1_A 116 TRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN 195 (327)
T ss_dssp ETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC
T ss_pred cCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC
Confidence 999999998865422 11223334666666666677788999999999888877 3211 11122
Q ss_pred cCCCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCccc-------eEEEEee---CCceEEEEEcCCCCeEEEEEeCCC
Q 004270 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR-------QIDAIHV---DVSITALSLSPNMDVLATAHVDQN 621 (764)
Q Consensus 555 ~h~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~---~~~v~~l~~sp~g~~lat~~~d~~ 621 (764)
....|.++...+++.+|+.++..|.++.-.+..-. -+..++. ...+..+....+.+.++..+.++.
T Consensus 196 -~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~ 271 (327)
T 3uc1_A 196 -IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGG 271 (327)
T ss_dssp -TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGC
T ss_pred -CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCe
Confidence 23557777666667789999999999988765422 1222222 123444443334445555566664
No 358
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=82.44 E-value=37 Score=32.90 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=94.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcC---C------cccceecCccccccccccCcEEEE-EECC--CCCEEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQS---G------ISRGSYLDMSERSNYAHNGEVVGV-ACDS--TNTLMISA 492 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~---~------~~~~~~~~~~~~~~~~h~~~v~~l-~~~~--~~~~l~s~ 492 (764)
..+..+........++..++.|.++.+.... . .++..+. . ......|.++ .... ++.+++.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i-----~-L~~~e~Iv~~~~~~~~~~~~~ll~~ 112 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANII-----P-IDRDEEIIKAIPINDFELNGYFLFV 112 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTS-----C-CCTTCCEEEEEEESCTTSSCEEEEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhcc-----C-CCCCCEEEEEEEecccCCCceEEEE
Confidence 4555555666677888889999887776532 1 1111110 0 1223345554 3432 25689999
Q ss_pred eCCCeEEEEECCCCC------eee--eEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE-------EE--Eeec
Q 004270 493 GYHGDIKVWDFKGRD------LKS--RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-------VR--KFEG 555 (764)
Q Consensus 493 ~~dg~v~iwd~~~~~------~~~--~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~-------~~--~~~~ 555 (764)
+.+|.++...+..-. -+. .+.....+..+........++..+.+|.+..++...-.. ++ .+.
T Consensus 113 T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~- 191 (323)
T 1wp5_A 113 TRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK- 191 (323)
T ss_dssp ETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-
T ss_pred eCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-
Confidence 999999998874221 111 223335666666666677888899999999888754222 11 122
Q ss_pred CCCCeeEEEEcCCCc-EEEEEeCCCcEEEEEcCc
Q 004270 556 HTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 556 h~~~i~~l~~s~dg~-~l~s~s~dg~i~iwd~~~ 588 (764)
....|.++..-+++. .|++.+..|..+.-++..
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 234466665444444 788888889888877754
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=78.70 E-value=50 Score=32.01 Aligned_cols=239 Identities=8% Similarity=0.055 Sum_probs=127.6
Q ss_pred eCCEEEEEecCCcEEEEEccCCcccccceeeEecCCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCC---------CCe
Q 004270 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS---------TKK 172 (764)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~---------~~~ 172 (764)
+...+++.+.+|.|+--.+...+........+. .+.....+...... ..|+..+..|.++-.... .|.
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~--d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTK--DVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETT--SEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCC--CEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 456788999999998776553221000001111 22333333333333 578888888887665442 122
Q ss_pred EEE---EEcCCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEEccCC------ceEEEEeccCCCCEEEEEEeeCCCCEE
Q 004270 173 KLY---EFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYD------EELVTFTHSMRGAVTALAFSSDGQPLL 240 (764)
Q Consensus 173 ~~~---~~~~h~~~i~~~~~sp---~~~~la~g~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~l~fs~d~~~~l 240 (764)
++. .+.. ...|.++..-+ ++.+++.++.+|.++...+..- +-+..+.....+.+..+....+.. .+
T Consensus 81 ~i~~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~-~i 158 (323)
T 1wp5_A 81 HIANIIPIDR-DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMN-EL 158 (323)
T ss_dssp EGGGTSCCCT-TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCS-EE
T ss_pred ChhhccCCCC-CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCC-EE
Confidence 211 1222 34566553333 2568999999999999987521 122222222235565555554444 56
Q ss_pred EEEeCCCcEEEEECCCcee-------eeeeecccccCeeEEEEecCCC-EEEEEcCCCcEEEEEecCCC-----CCcee-
Q 004270 241 ASGASSGVISIWNLEKRRL-------QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD-----GDPRL- 306 (764)
Q Consensus 241 ~sg~~dg~i~iwd~~~~~~-------~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~-----~~~~~- 306 (764)
+..+.+|.+..++...-.. +..+.......|.++...+++. .+++.+..|..+..+++.-. +....
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 6778889988887643211 1112212345677776655555 78888888888887765421 11111
Q ss_pred eEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeec
Q 004270 307 LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 307 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~ 345 (764)
.+.+......+..+....++..++..+..|.+..+.+..
T Consensus 239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 111112222444333333445666777777776666543
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.35 E-value=58 Score=32.56 Aligned_cols=179 Identities=10% Similarity=0.037 Sum_probs=85.5
Q ss_pred CEEEEEeCCCcEEEEeCCC-CeEEEEE--cCCCCCeEEEEEcC-CCCEEEEEEcCC----eEEEEEccCCceEEEEecc-
Q 004270 152 NKVIVGSQEGSLQLWNIST-KKKLYEF--KGWGSSISSCVSSP-ALDVVAVGCSDG----KIHVHNVRYDEELVTFTHS- 222 (764)
Q Consensus 152 ~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~h~~~i~~~~~sp-~~~~la~g~~dg----~i~iwd~~~~~~~~~~~~~- 222 (764)
..|++|+..| +.+++... ++.-..+ ......|.++++.| +...|.+++..| .|... ...++.-..+...
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence 5788898887 55555432 2222221 12356799999998 233444455444 34332 2233322222111
Q ss_pred ------------CCCCEEEEEEeeC--CCCEEEEEeCCCcEEEEECCCceeeeeeec------------------ccccC
Q 004270 223 ------------MRGAVTALAFSSD--GQPLLASGASSGVISIWNLEKRRLQSVIRE------------------AHDNA 270 (764)
Q Consensus 223 ------------~~~~v~~l~fs~d--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------------------~h~~~ 270 (764)
....|.++++.|. .. .+.+++..+.|...+ ..++.-..+.. .....
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPG-TWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTT-CEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCC-EEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 0125788999873 33 455555555555443 22222111110 01235
Q ss_pred eeEEEEecC-CCEEEEEcCCCcEEEEEecCCCCCceeeEec-c-CC--------CCCCeeEEEecC-CCEEEEEeCCC
Q 004270 271 IISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFR-S-GH--------SAPPLCIRFYAN-GRHILSAGQDR 336 (764)
Q Consensus 271 v~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-~-~h--------~~~v~~i~~~~~-~~~l~s~~~dg 336 (764)
+.+|.+.|. ...+..+..++. +|...........+... . .+ ...+.++.+.|+ ...++.+...+
T Consensus 179 i~~i~~d~~~~~~l~vg~~~gg--l~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGG--VFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBE--EEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eeEEEECCCCCCEEEEEECCCC--EEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 788988873 334444443443 33333332222222110 0 00 124778888884 45666666544
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.46 E-value=65 Score=37.80 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.5
Q ss_pred CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEee
Q 004270 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597 (764)
Q Consensus 559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 597 (764)
.+.+++..++..+|++-+.|+++|||++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455667778889999999999999999999999988653
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.37 E-value=25 Score=40.26 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 004270 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514 (764)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 514 (764)
..+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3577888888889999999999999999999998887654
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.73 E-value=1e+02 Score=33.70 Aligned_cols=72 Identities=8% Similarity=0.096 Sum_probs=41.6
Q ss_pred CCeEEEEEccCCCEEEEEecCC--cEEEEECcCCc-ccce-ecCccccccccccCcEEEEEECCCCC-EEEEEeC---CC
Q 004270 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGI-SRGS-YLDMSERSNYAHNGEVVGVACDSTNT-LMISAGY---HG 496 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g--~i~i~~~~~~~-~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~---dg 496 (764)
..+..+.+..+ ..+++...+| .+.++++.++. .... +. ....+.+.....++++. ++++.+. -+
T Consensus 350 ~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~-------lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~ 421 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLK-------LPYQNAIFGMSSYEEEEEALITIENSIVPP 421 (711)
T ss_dssp EEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEEC-------CCSTTCEEEEECCTTCSCEEEEEECSSSCC
T ss_pred CeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccC-------CCCCeEEEEEeecCcCCEEEEEEecCCCCC
Confidence 45667777765 5666677776 46677776664 2222 21 01134566667767664 4444432 35
Q ss_pred eEEEEECC
Q 004270 497 DIKVWDFK 504 (764)
Q Consensus 497 ~v~iwd~~ 504 (764)
.+..+|+.
T Consensus 422 ~~~~~d~~ 429 (711)
T 4hvt_A 422 TIYLWVKT 429 (711)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 67778776
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.08 E-value=25 Score=40.31 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.9
Q ss_pred CeeEEEEcCCCcEEEEEeCCCcEEEEEcCccceEEEEe
Q 004270 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 596 (764)
Q Consensus 559 ~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 596 (764)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999999998765
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=71.90 E-value=73 Score=30.64 Aligned_cols=157 Identities=8% Similarity=0.065 Sum_probs=98.7
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCC---------cccceecCccccccccccCcEEEEEECC---CCCEEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSG---------ISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISA 492 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~---------~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~ 492 (764)
..+..+........++..+..|.++.+....- ....... . ......|.++..-+ ++.+++..
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l-----~-l~~~e~i~~~~~~~~~~~~~~ll~~ 120 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELI-----N-LGDQEEILTIKNSKDLTDDAYLLLT 120 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTS-----C-CCTTCCEEEEEEESCCCTTCEEEEE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhcc-----C-CCCCCEEEEEEEeccCCCCCEEEEE
Confidence 44555556666778888899999888776421 1110010 0 12234455554332 46778889
Q ss_pred eCCCeEEEEECCC-------CCeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCCeE---------EEEeecC
Q 004270 493 GYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM---------VRKFEGH 556 (764)
Q Consensus 493 ~~dg~v~iwd~~~-------~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~~~---------~~~~~~h 556 (764)
+..|.++...+.. |.....+.....+..+....++..++..+.+|.+..+....-.. .-.+..
T Consensus 121 T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~- 199 (312)
T 1suu_A 121 TASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE- 199 (312)
T ss_dssp ETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-
T ss_pred eCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-
Confidence 9999999887742 22222233346677776666677888999999999998764211 112322
Q ss_pred CCCeeEEEEcCCCcEEEEEeCCCcEEEEEcCc
Q 004270 557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (764)
Q Consensus 557 ~~~i~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 588 (764)
...|..+..-.++..|++.+..|..+..++..
T Consensus 200 ~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 200 GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 34566666655666788888999999888754
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.19 E-value=15 Score=39.75 Aligned_cols=37 Identities=8% Similarity=0.286 Sum_probs=31.3
Q ss_pred ceEEEEEeCCEEEEEecCCcEEEEEccCCcccccceeeEec
Q 004270 95 KVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL 135 (764)
Q Consensus 95 ~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~ 135 (764)
.|.++.++..+|++.+.|.++|+|++.++++ +.+...
T Consensus 223 ~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~l----v~t~DL 259 (729)
T 3f7f_A 223 VISCKLFHERYLIVLTQNCHLKIWDLTSFTL----IQDYDM 259 (729)
T ss_dssp EEEEEEETTTEEEEEETTCEEEEEETTTTEE----EEEEET
T ss_pred eEEEeccCCcEEEEEEcCCeEEEEEcCCCce----EEeecc
Confidence 5777778899999999999999999999987 555554
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.05 E-value=17 Score=38.63 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=42.6
Q ss_pred eeEEEEcCCCcEEEEEeCC------------CcEEEEEcCccceEEEEeeCC--ceEEEEEcCCCCeEEEEEe
Q 004270 560 ITDFCFSEDGKWLLSSGMD------------GSLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHV 618 (764)
Q Consensus 560 i~~l~~s~dg~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~--~v~~l~~sp~g~~lat~~~ 618 (764)
.-.|+|+|+|++++.-..+ ..+.+.+..+|++.+.+..+. .++.++|+||++.|.+.-+
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 4568999999977755432 235566777787776666554 5999999999998876644
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=63.46 E-value=35 Score=35.88 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCeeEEEEcCCCcEEEEEeC------------CCcEEEEEcCccceEEEEeeC--CceEEEEEcCCCCeEEEEEeC
Q 004270 558 DRITDFCFSEDGKWLLSSGM------------DGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVD 619 (764)
Q Consensus 558 ~~i~~l~~s~dg~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~~--~~v~~l~~sp~g~~lat~~~d 619 (764)
.....|.|.++|.+.+.... ...|..++..+|++...+..+ ..++.++||||++.|.++-..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 34678999999997774332 125666777778876666544 358999999999998887654
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.50 E-value=1.1e+02 Score=29.31 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=111.6
Q ss_pred EEeCCEEEEEecCCcEEEEEccCCccccc---ceeeEec-CCccccEEEEeCCCCCCEEEEEeCCCcEEEEeCCC---C-
Q 004270 100 LLFGEHILSIDIDGNMFIWAFKGIEENLA---PVGHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST---K- 171 (764)
Q Consensus 100 ~~~g~~l~s~~~dg~v~vWd~~~~~~~~~---~~~~~~~-~~~~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~---~- 171 (764)
.++...+++.+.+|.|+--.+........ -...+.. .+.....+...... ..++..+..|.++-..... .
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~--~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTH--DYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETT--CEEEEEETTSEEEEEEGGGSCC--
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCC--CEEEEEECCCeEEEEEHHHCCCCC
Confidence 34677899999999999887765432110 1111222 22333333333333 5788888899877665432 1
Q ss_pred -----eE---EEEEcCCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEEccCCc-----eEEEEeccCCCCEEEEEEeeC
Q 004270 172 -----KK---LYEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDE-----ELVTFTHSMRGAVTALAFSSD 235 (764)
Q Consensus 172 -----~~---~~~~~~h~~~i~~~~~sp---~~~~la~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~v~~l~fs~d 235 (764)
.. ...+.. ...|.++...+ +.++|+..+.+|.++...+..-. -+..+.....+.+..+....+
T Consensus 83 r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred ccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 11 011222 34555554433 46788889999999998875321 111122222456666665544
Q ss_pred CCCEEEEEeCCCcEEEEECCCcee-------eeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEecC
Q 004270 236 GQPLLASGASSGVISIWNLEKRRL-------QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (764)
Q Consensus 236 ~~~~l~sg~~dg~i~iwd~~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (764)
+. .++..+.+|.+..+....-.. +..+.......|.++....++..+++.+..|..+...++.
T Consensus 162 ~~-~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DE-KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TC-EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CC-EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 44 577788899999988754211 1112212345667776666666788888899988887753
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=60.70 E-value=1.1e+02 Score=28.68 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=67.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCccccee-cCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY-LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 503 (764)
..+..+........++..+..|.+..++...-.....- ....... ......|.++...+++..++..+..|.++...+
T Consensus 116 D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~-L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 116 DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK-LEKNDETSGLRIWNGEPYLLVITAKGRVKKISH 194 (276)
T ss_dssp CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEEEESSCSEEEEEETTSCEEEEEG
T ss_pred CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc-cCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEH
Confidence 45555555556678999999999998876432211100 0000000 122356666665566678889999999998876
Q ss_pred CCC-------CeeeeEecCcceEEEEEeecCCEEEEEeCCCeEEE--EEccC
Q 004270 504 KGR-------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL--FDVVA 546 (764)
Q Consensus 504 ~~~-------~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v--~d~~~ 546 (764)
..- +-+..+.....+..+....+...++..+.+|.+.. ++...
T Consensus 195 ~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 195 EEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp GGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred HHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 432 12222222344444433333445666666776666 66543
No 371
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=58.55 E-value=1.5e+02 Score=29.44 Aligned_cols=195 Identities=8% Similarity=-0.002 Sum_probs=90.7
Q ss_pred cEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-------------------CCCCeEEEEEcCC-CCEEEEEE
Q 004270 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-------------------WGSSISSCVSSPA-LDVVAVGC 200 (764)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------h~~~i~~~~~sp~-~~~la~g~ 200 (764)
..+++.|....+.+++++..+.|...+ ..|+.-..+.. ....+.++.+.|. ...|.++.
T Consensus 118 ~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~ 196 (394)
T 3b7f_A 118 FWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGM 196 (394)
T ss_dssp EEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEE
T ss_pred eEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEE
Confidence 345666532014677776666565554 23333222211 1245789999884 44556665
Q ss_pred cCCeEEEEEccCCceEEEEeccC------------CCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc-
Q 004270 201 SDGKIHVHNVRYDEELVTFTHSM------------RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH- 267 (764)
Q Consensus 201 ~dg~i~iwd~~~~~~~~~~~~~~------------~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~h- 267 (764)
.++.|...+ ..++.-..+.... ...+.++++.|+....|..+...+ |...+- .++.-..+....
T Consensus 197 ~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~ 273 (394)
T 3b7f_A 197 SSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMP 273 (394)
T ss_dssp ETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSC
T ss_pred CCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCC
Confidence 555443332 2233322222110 124899999987433666666544 544442 232222221111
Q ss_pred c---cCeeEEEEecC-CCEEEEEcC-----------CCcEEEEEecCCCCCceeeEe-ccCCC----CCCeeEEEec-CC
Q 004270 268 D---NAIISLHFFAN-EPVLMSASA-----------DNSIKMWIFDTTDGDPRLLRF-RSGHS----APPLCIRFYA-NG 326 (764)
Q Consensus 268 ~---~~v~~l~~~~~-~~~l~s~~~-----------d~~i~vw~~~~~~~~~~~~~~-~~~h~----~~v~~i~~~~-~~ 326 (764)
. ..+.++.+.|. ...+..+.. ++...+|.-.........+.. +.... .-...++++| +.
T Consensus 274 ~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~ 353 (394)
T 3b7f_A 274 REVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAP 353 (394)
T ss_dssp TTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSS
T ss_pred CCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCC
Confidence 1 23567777763 333444421 333456644433233333221 11100 0124678887 34
Q ss_pred CEEEEEeCCCcEE
Q 004270 327 RHILSAGQDRAFR 339 (764)
Q Consensus 327 ~~l~s~~~dg~i~ 339 (764)
..|+.++.++.|.
T Consensus 354 ~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 354 VGVYFGTTGGEIW 366 (394)
T ss_dssp CCEEEECTTSCEE
T ss_pred CEEEEEeCCCeEE
Confidence 4566666555443
No 372
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.11 E-value=1.5e+02 Score=29.30 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=64.6
Q ss_pred CCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------
Q 004270 435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------- 507 (764)
Q Consensus 435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~------- 507 (764)
.+.+++..+..|.++...+..-..... .......+ ...+.+..+........++..+.+|.+..++...-.
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~-~G~~ai~L-~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~ 189 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLA-RGKIAINL-DEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTAT 189 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCT-TCEESSCC-CTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccC-CceEEEEe-CCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCC
Confidence 457999999999999988754332110 00000011 124455555555555678888888988888754221
Q ss_pred --eeeeEecCcceEEEEEee-----------------------------------cCCEEEEEeCCCeEEEEEccCC
Q 004270 508 --LKSRWEVGCSLVKIVYHR-----------------------------------VNGLLATVADDLVIRLFDVVAL 547 (764)
Q Consensus 508 --~~~~~~~~~~i~~~~~s~-----------------------------------~~~~la~~~~d~~i~v~d~~~~ 547 (764)
....+.....|.++...+ ++..+++.+..|..+...+...
T Consensus 190 GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 190 GVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp CEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGS
T ss_pred CeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHh
Confidence 111222335555555544 4467888888888888877643
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.18 E-value=20 Score=42.13 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=32.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 004270 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514 (764)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 514 (764)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445566677888999999999999999999999888764
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=54.37 E-value=1.5e+02 Score=28.28 Aligned_cols=122 Identities=13% Similarity=0.017 Sum_probs=66.2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 504 (764)
..+..+........++..+.+|.+..++...-....................|.++....++..+++.+..|.++-.++.
T Consensus 146 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 146 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 44444445455667888999999998887542222110000000001234567777665556678888999999888763
Q ss_pred CCC-------eeee--Eec-CcceEEEEEeecCCEEEEEeCCCeEEEEEccC
Q 004270 505 GRD-------LKSR--WEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (764)
Q Consensus 505 ~~~-------~~~~--~~~-~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~ 546 (764)
.-. -+.. +.. ...+..+....+...++..+.+|.+.-++...
T Consensus 226 e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 226 EYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp GSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred HhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 211 1111 111 14444444434445555666666665555543
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.73 E-value=62 Score=35.07 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=51.0
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECcCCcccce--ecCcc---------cc-ccccccCcEEEEEECCCCCEEEEE
Q 004270 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS--YLDMS---------ER-SNYAHNGEVVGVACDSTNTLMISA 492 (764)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~--~~~~~---------~~-~~~~h~~~v~~l~~~~~~~~l~s~ 492 (764)
.+..-++.+++. ++++-.||.+-.++......... +.... .+ ........|.++.+. ..++++-
T Consensus 162 ~Ph~L~avs~~~--liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~~--~~fLftL 237 (729)
T 3f7f_A 162 VPHFLFYVSPQF--SVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLFH--ERYLIVL 237 (729)
T ss_dssp CEEEEEECSSSB--EEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEET--TTEEEEE
T ss_pred CCcEEEEECCCe--EEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHhhcCCCCCCcCceEEEeccC--CcEEEEE
Confidence 344445555433 77788887666555443322111 10000 00 001122346655553 6799999
Q ss_pred eCCCeEEEEECCCCCeeeeEecC
Q 004270 493 GYHGDIKVWDFKGRDLKSRWEVG 515 (764)
Q Consensus 493 ~~dg~v~iwd~~~~~~~~~~~~~ 515 (764)
+.|.++|+|++.+++++......
T Consensus 238 ~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 238 TQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp ETTCEEEEEETTTTEEEEEEETT
T ss_pred EcCCeEEEEEcCCCceEEeeccc
Confidence 99999999999999988887763
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=52.68 E-value=1.6e+02 Score=28.09 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=80.8
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCceE-------EEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEEC---CC----
Q 004270 191 PALDVVAVGCSDGKIHVHNVRYDEEL-------VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL---EK---- 256 (764)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~~-------~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~---~~---- 256 (764)
|+..++++.+.+|.|+--.+.+-+.. ..+.......+..+....... .|+..+..|.+.-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~-~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHD-HILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCC-EEEEEECCCEEEEEEhhHCcCCCCC
Confidence 45667888999999987776542211 111111123444444444444 5666677787666543 22
Q ss_pred --ceeee-eeecccccCeeEEEEe---cCCCEEEEEcCCCcEEEEEecCCCC---CceeeEeccCCCCCCeeEEEecCCC
Q 004270 257 --RRLQS-VIREAHDNAIISLHFF---ANEPVLMSASADNSIKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANGR 327 (764)
Q Consensus 257 --~~~~~-~~~~~h~~~v~~l~~~---~~~~~l~s~~~d~~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (764)
|..+. .+.......|.++... .++.+++..+..|.++--.+..-.. .......+..+ +.+..+....+..
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 22211 1111234456666543 3456888999999999887642211 11111122223 5555555555556
Q ss_pred EEEEEeCCCcEEEEEee
Q 004270 328 HILSAGQDRAFRLFSVI 344 (764)
Q Consensus 328 ~l~s~~~dg~i~i~d~~ 344 (764)
.++..+.+|.+..+...
T Consensus 159 ~i~l~T~~G~~irf~~~ 175 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKES 175 (307)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred EEEEECCCCcEEEEEHH
Confidence 77888888887777654
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=46.29 E-value=2.3e+02 Score=28.04 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=73.5
Q ss_pred CCEEEEEecCCcEEEEECcCCcccceec----CccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-Ce--
Q 004270 436 GNFAVLGTAGGWIERFNLQSGISRGSYL----DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DL-- 508 (764)
Q Consensus 436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~-- 508 (764)
....++-+.+|.|+.|-....-.+..-. ..+..........|..++........+....||.|..|-.... ++
T Consensus 168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~ 247 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR 247 (389)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSS
T ss_pred cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCC
Confidence 3455555677788887653311110000 0000000112345777776554456666778999999965421 10
Q ss_pred ------ee--eEecC--cceEEEEEeecCCEEEEEeCCCeEEEEEccCC-----------eEEEEeec-CCCCeeEEEEc
Q 004270 509 ------KS--RWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEG-HTDRITDFCFS 566 (764)
Q Consensus 509 ------~~--~~~~~--~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-----------~~~~~~~~-h~~~i~~l~~s 566 (764)
.. .+... ..|..++.. ....++-..+|.|+.|-.... .....+.. ....|..++..
T Consensus 248 g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G 325 (389)
T 3kci_A 248 GGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG 325 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC
T ss_pred CCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec
Confidence 00 11111 234444433 445555578899999965321 11112221 12346666654
Q ss_pred CCCcEEEEEeCCCcEEEEEcC
Q 004270 567 EDGKWLLSSGMDGSLRIWDVI 587 (764)
Q Consensus 567 ~dg~~l~s~s~dg~i~iwd~~ 587 (764)
.. ..+....||.|+.|=..
T Consensus 326 ~~--h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 326 SL--HCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp SS--EEEEEETTCCEEEEECC
T ss_pred cC--eEEEECCCCCEEEeeCC
Confidence 33 34445678889999654
No 378
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.72 E-value=63 Score=34.33 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCEEEEEEcC------------CeEEEEEccCCceEEEEeccCCCCEEEEEEeeCCCCEEE
Q 004270 184 ISSCVSSPALDVVAVGCSD------------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (764)
Q Consensus 184 i~~~~~sp~~~~la~g~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~l~ 241 (764)
.-.|+|+|.|++++.-..+ ..+.+.+..+++..+-+..+....++.++|+||++.+++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 4678999999866554322 246666777777766666666679999999999984444
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.53 E-value=81 Score=33.16 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=42.0
Q ss_pred CEEEEEEeeCCCCEEEEEeC------------CCcEEEEECCCceeeeeeecccccCeeEEEEecCCCEEEEEc
Q 004270 226 AVTALAFSSDGQPLLASGAS------------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (764)
Q Consensus 226 ~v~~l~fs~d~~~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 287 (764)
....|.|.++|. +.+.-.. ...+..++..++++...+.......++.++|+||++.|+.+-
T Consensus 477 sPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467899999998 5542221 125777777778776665422346789999999999877653
No 380
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=39.86 E-value=2.9e+02 Score=27.32 Aligned_cols=167 Identities=11% Similarity=0.113 Sum_probs=96.6
Q ss_pred cEEEEECcCC--cccceecCccccccccccCcEEEEEEC---CC----CCEEEEE-eCCCeEEEEECCCCCeeeeEe---
Q 004270 447 WIERFNLQSG--ISRGSYLDMSERSNYAHNGEVVGVACD---ST----NTLMISA-GYHGDIKVWDFKGRDLKSRWE--- 513 (764)
Q Consensus 447 ~i~i~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~----~~~l~s~-~~dg~v~iwd~~~~~~~~~~~--- 513 (764)
.|.+||+.++ +.+..+..+.... .....+..++++ +. +.++..+ ...+-|.++|+.+++..+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~--~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLV--EKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTF 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGC--CCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhc--ccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCC
Confidence 5788999998 8877775432222 224568888888 22 2333333 356789999999886554432
Q ss_pred ----------------cCcceEEEEEeec----CCEEEEEeCCC-eEEEEE---ccCC---eEEEEeecCC---CCeeEE
Q 004270 514 ----------------VGCSLVKIVYHRV----NGLLATVADDL-VIRLFD---VVAL---RMVRKFEGHT---DRITDF 563 (764)
Q Consensus 514 ----------------~~~~i~~~~~s~~----~~~la~~~~d~-~i~v~d---~~~~---~~~~~~~~h~---~~i~~l 563 (764)
....+..++++|+ ++.|....-.+ .++-.. ++.. ..++.+ |.. ..-..+
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~ 280 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIAL 280 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEE
T ss_pred ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceE
Confidence 1246778888887 67776655443 233222 1111 111111 222 223456
Q ss_pred EEc-CCCcEEEEEeCCCcEEEEEcCc-c---ceEEEEeeCCc---eEEEEEcCCCCeEEEE
Q 004270 564 CFS-EDGKWLLSSGMDGSLRIWDVIL-A---RQIDAIHVDVS---ITALSLSPNMDVLATA 616 (764)
Q Consensus 564 ~~s-~dg~~l~s~s~dg~i~iwd~~~-~---~~~~~~~~~~~---v~~l~~sp~g~~lat~ 616 (764)
++. .+|.+.++--....|..|+..+ . +....+..... +..+.+.++|.+.+++
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 675 6788777777888999999875 1 22333333223 6667776666554444
No 381
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=35.31 E-value=3.3e+02 Score=26.73 Aligned_cols=112 Identities=8% Similarity=0.060 Sum_probs=62.3
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCc-------eeeeeeecccccCeeEEEEecCCCEEEEEcCCCcEEEEEec---CC--
Q 004270 233 SSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD---TT-- 300 (764)
Q Consensus 233 s~d~~~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~i~vw~~~---~~-- 300 (764)
-|+.. ++++.+.+|.|+--.+... +-...+.......+..+........|+..+..|.+.-+... ..
T Consensus 4 I~~e~-~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPED-VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCC-EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCC-EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 45666 8888999999987654321 11222221245566666666666666666667766544432 11
Q ss_pred CCCceeeEec--cCCCCCCeeEEEec---CCCEEEEEeCCCcEEEEEeec
Q 004270 301 DGDPRLLRFR--SGHSAPPLCIRFYA---NGRHILSAGQDRAFRLFSVIQ 345 (764)
Q Consensus 301 ~~~~~~~~~~--~~h~~~v~~i~~~~---~~~~l~s~~~dg~i~i~d~~~ 345 (764)
......+..+ ......|.++.... ++.+|+.++..|.++...+..
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e 132 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSE 132 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHH
Confidence 1111111110 12234555554432 456899999999998887654
No 382
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=28.24 E-value=4.4e+02 Score=25.92 Aligned_cols=242 Identities=10% Similarity=0.117 Sum_probs=121.2
Q ss_pred ceEEEEEeCCEEEEEecCCcEEEEEccCCccc--------ccceeeEe-cCCccccEEEEeCCCCCCEEEEEeCCCcEEE
Q 004270 95 KVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN--------LAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (764)
Q Consensus 95 ~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~i 165 (764)
.|..++.-..+.+....||.|..|-....-.. ..|. .+. .....+..+.++... ...+.-..+|.|+.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~-~v~~~~~~~~~~v~i~~G~--~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPT-LLESIQHVFIKKVAVNSGG--KHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEE-ECGGGTTSCEEEEEECTTC--SEEEEEETTSCEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCE-EcccccCCceeEEEECcCC--CeEEEEcCCCCEEE
Confidence 46667777788888888999999965432110 0110 111 111122223444444 56677788999999
Q ss_pred EeCCC-C----------eEEEEEcCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC-c----------eEEEEecc
Q 004270 166 WNIST-K----------KKLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD-E----------ELVTFTHS 222 (764)
Q Consensus 166 wd~~~-~----------~~~~~~~~h-~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~-~----------~~~~~~~~ 222 (764)
|-... + .....+... ...|..++... ...+.-..+|.|..|-.... + ....+...
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG--AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc--CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 95432 1 111112211 22566665543 34455567899999964321 0 11111121
Q ss_pred CCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCce-----------eeeeeecccccCeeEEEEecCCCEEEEEcCCCc
Q 004270 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-----------LQSVIREAHDNAIISLHFFANEPVLMSASADNS 291 (764)
Q Consensus 223 ~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~-----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 291 (764)
....|..++...... ..+.-..+|.|..|-....- ....+.......|..++... ...+....||.
T Consensus 209 ~~~~v~~ia~G~g~~-~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~ 285 (389)
T 3kci_A 209 QGHRVVDIACGSGDA-QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGA 285 (389)
T ss_dssp TTSCEEEEEECCSSC-EEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSC
T ss_pred CCCeEEEEEEcCCCc-EEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCe
Confidence 234566666543223 45555678999999643211 11111111122455555543 34444567899
Q ss_pred EEEEEecCCCC------Cc--eeeEeccCCCCCCeeEEEecCCCEEEEEeCCCcEEEEEeecc
Q 004270 292 IKMWIFDTTDG------DP--RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346 (764)
Q Consensus 292 i~vw~~~~~~~------~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~i~d~~~~ 346 (764)
|..|=...... .. .+..........|..++ ....+.+....||.+..|=....
T Consensus 286 v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia--~G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA--TGSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE--ECSSEEEEEETTCCEEEEECCTT
T ss_pred EEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEE--eccCeEEEECCCCCEEEeeCCCC
Confidence 99995432110 00 01111111112344443 34455666678999999976543
No 383
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=27.90 E-value=6.3e+02 Score=27.61 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=58.8
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-------CCCeEEEEEcCC-CCEEEEEEcC-------C
Q 004270 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW-------GSSISSCVSSPA-LDVVAVGCSD-------G 203 (764)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------~~~i~~~~~sp~-~~~la~g~~d-------g 203 (764)
.+..++++|... +.++++...|.|..++ ..|+.-..+..+ ...|.++++.|. .+.+.++... +
T Consensus 24 ~i~~i~~~p~~~-~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEK-DLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSST-TCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCC-CEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 677888999754 4677787777777665 344443434322 245899999983 3445444421 1
Q ss_pred eEEEEEcc-CCceEEEEeccC--------CCCEEEEEEeeCCCCEEEEEeC
Q 004270 204 KIHVHNVR-YDEELVTFTHSM--------RGAVTALAFSSDGQPLLASGAS 245 (764)
Q Consensus 204 ~i~iwd~~-~~~~~~~~~~~~--------~~~v~~l~fs~d~~~~l~sg~~ 245 (764)
...||.-. .|+.-....... ...+..|++.|.....+..+..
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 23455443 333322222111 1124679999875446666653
No 384
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=27.21 E-value=4.8e+02 Score=25.99 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=64.0
Q ss_pred cCCeEEEEEEeCCeEEEEecCCCeEEEe------------cCCCCcceEEEEEeCCeEEEEE-CCeEEEEec--Cc--eE
Q 004270 24 LGTENFVTVSVGKAFHIYNCAKLNLVLV------------GPQLPKKIRALASYRDYTFAAY-GNHIAVVKR--AH--QV 86 (764)
Q Consensus 24 ~~~~~~~~~~~~~~i~iwd~~~~~~~~~------------~~~~~~~I~~~~~~~~~~~~a~-g~~i~vw~~--~~--~~ 86 (764)
-+..+.+....++.+..|-....-++-. .......|..++...+..++.+ .+.|+.|-. +. ++
T Consensus 82 ~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~Gql 161 (423)
T 3mvd_K 82 AGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNM 161 (423)
T ss_dssp ECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEE
T ss_pred eCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence 4566777777889999997654221110 0113457888888887777666 445999964 21 11
Q ss_pred ----------EEecccccceEEEEEeCCEEEEEecCCcEEEEEccC
Q 004270 87 ----------ATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKG 122 (764)
Q Consensus 87 ----------~~~~~h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~ 122 (764)
.........|..|+.-..+.+....+|.|..|-...
T Consensus 162 G~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~ 207 (423)
T 3mvd_K 162 GLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207 (423)
T ss_dssp ESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred CcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCc
Confidence 111123446888888788888899999999996543
No 385
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=25.61 E-value=28 Score=17.76 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=9.9
Q ss_pred hcCCCCCCCCCCcCC
Q 004270 716 FQHLLIILKVCPHLL 730 (764)
Q Consensus 716 ~r~~p~~~~~~p~~~ 730 (764)
+|..-++||..|+.|
T Consensus 3 qrhsivqppapppna 17 (26)
T 2lkw_A 3 QRHSIVQPPAPPPNA 17 (26)
T ss_pred cccccccCCCcCCCe
Confidence 455567777777665
No 386
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.48 E-value=2.5e+02 Score=21.79 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=13.9
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 004270 228 TALAFSSDGQPLLASGASSGVISIWNLEK 256 (764)
Q Consensus 228 ~~l~fs~d~~~~l~sg~~dg~i~iwd~~~ 256 (764)
..+.+..+|. +++. ..++.+ +|...+
T Consensus 59 ~~l~l~~dGN-LVl~-d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGE-LDIT-DDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSC-EEEE-CTTSCE-EEECSC
T ss_pred EEEEEeCCCc-EEEE-CCCCCE-EEECCC
Confidence 3566777776 4443 334443 676443
No 387
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=24.23 E-value=4.2e+02 Score=24.31 Aligned_cols=142 Identities=9% Similarity=0.049 Sum_probs=80.6
Q ss_pred EEEEEecCCcEEEEECcCCcccceecCccccccccccCcEEEEEECCCCCEEEEEeCCCeEEEEECC---C----CCee-
Q 004270 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK---G----RDLK- 509 (764)
Q Consensus 438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~---~----~~~~- 509 (764)
..++.+.+|.|+.-....-... .+. + .-...+..+........++..+..|.++-.... . |..+
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~-~~~------l-ke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~ 75 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAP-GLN------Y-KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 75 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCST-TSC------C-CTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGG
T ss_pred EEEEEeCCCEEEEeeCCcCCce-ecc------C-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEee
Confidence 4556678888876664332110 000 1 223344444444344556667778886655432 2 2111
Q ss_pred --eeEecCcceEEEEEeecCCEEEEEeCCCeEEEEEccCC-------eEEEEeecCCCCeeEEEEc-CCCcEEEEEeCCC
Q 004270 510 --SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-------RMVRKFEGHTDRITDFCFS-EDGKWLLSSGMDG 579 (764)
Q Consensus 510 --~~~~~~~~i~~~~~s~~~~~la~~~~d~~i~v~d~~~~-------~~~~~~~~h~~~i~~l~~s-~dg~~l~s~s~dg 579 (764)
..+.....|.++....++.+++.++..|.++...+... .....+.. .+.+..+... .++..|+..+.+|
T Consensus 76 ~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G 154 (256)
T 1zvt_A 76 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAG 154 (256)
T ss_dssp GTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTS
T ss_pred eeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCC
Confidence 11333456777755456778889999999999987542 22333432 2445555555 3455777888899
Q ss_pred cEEEEEcCc
Q 004270 580 SLRIWDVIL 588 (764)
Q Consensus 580 ~i~iwd~~~ 588 (764)
.+..+.+..
T Consensus 155 ~~lrf~~~e 163 (256)
T 1zvt_A 155 RMLMFPVSD 163 (256)
T ss_dssp EEEEEEGGG
T ss_pred eEEEEEHHH
Confidence 888888753
No 388
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=23.09 E-value=5.6e+02 Score=25.35 Aligned_cols=263 Identities=11% Similarity=0.099 Sum_probs=136.1
Q ss_pred ecCCeEEEEEEeCCeEEEEecCCCe------------EEEecCCCCcceEEEEEeCCeEEEEEC--CeEEEEecCc----
Q 004270 23 RLGTENFVTVSVGKAFHIYNCAKLN------------LVLVGPQLPKKIRALASYRDYTFAAYG--NHIAVVKRAH---- 84 (764)
Q Consensus 23 ~~~~~~~~~~~~~~~i~iwd~~~~~------------~~~~~~~~~~~I~~~~~~~~~~~~a~g--~~i~vw~~~~---- 84 (764)
.-+..+.+....++.+..|-....- ...+.......|..++...+..++... +.|+.|-.+.
T Consensus 22 a~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqL 101 (406)
T 4d9s_A 22 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRL 101 (406)
T ss_dssp EECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTT
T ss_pred ecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCC
Confidence 3566666677778899999765421 122222224578889888887776653 3799995311
Q ss_pred ------eEEE---ecc-cccceEEEEEeCCEEEEEecCCcEEEEEccCCccc--------ccceeeEe-cCCccccEEEE
Q 004270 85 ------QVAT---WSR-HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN--------LAPVGHVK-LDDKFTPTCIM 145 (764)
Q Consensus 85 ------~~~~---~~~-h~~~v~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~--------~~~~~~~~-~~~~~~~~~~~ 145 (764)
.... +.. ....|..|+.-..+.+....+|.|..|-....-.. ..|. .+. .....+.. +
T Consensus 102 G~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~-~v~~~~~~~i~~--v 178 (406)
T 4d9s_A 102 GHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQ-KIQAFEGIRIKM--V 178 (406)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEE-ECGGGTTCCEEE--E
T ss_pred CCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccce-EecccCCCcEEE--E
Confidence 1111 111 23368888888888888899999999976542210 0010 111 11112222 2
Q ss_pred eCCCCCCEEEEEeCCCcEEEEeCCCC----------eEE-EEEcC-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEccCC
Q 004270 146 HPDTYLNKVIVGSQEGSLQLWNISTK----------KKL-YEFKG-WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213 (764)
Q Consensus 146 ~p~~~~~~l~~~~~dg~i~iwd~~~~----------~~~-~~~~~-h~~~i~~~~~sp~~~~la~g~~dg~i~iwd~~~~ 213 (764)
+... ...++-..+|.|+.|-.... ... ..+.. ....|..++... ...+.-..+|.|..|-....
T Consensus 179 a~G~--~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ht~~l~~~G~v~~wG~n~~ 254 (406)
T 4d9s_A 179 AAGA--EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW--RHTISVSYSGALYTYGWSKY 254 (406)
T ss_dssp EECS--SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS--SEEEEEETTCCEEEEECCTT
T ss_pred ecCC--CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC--CcEEEEcCCCCEEEeeCCCC
Confidence 2223 45666678999999954321 111 11111 124565555543 33444567888888864321
Q ss_pred c----------e-EEEEeccCCCCEEEEEEeeCCCCEEEEEeCCCcEEEEECCCceee-----------eeeecccccCe
Q 004270 214 E----------E-LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-----------SVIREAHDNAI 271 (764)
Q Consensus 214 ~----------~-~~~~~~~~~~~v~~l~fs~d~~~~l~sg~~dg~i~iwd~~~~~~~-----------~~~~~~h~~~v 271 (764)
. . ...+.......|..++--. . ..+.-..+|.|..|=....-.+ ..+.......|
T Consensus 255 GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~--~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v 331 (406)
T 4d9s_A 255 GQLGHGDLEDHLIPHKLEALSNSFISQISGGW--R-HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 331 (406)
T ss_dssp STTCSSSCCCEEEEEECGGGTTSCEEEEEECS--S-EEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCE
T ss_pred CCCCCCCCcCccccEEecccCCCCEEEEEecC--C-EEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcE
Confidence 1 1 1111111123466555432 2 4444567889999964331110 11111122345
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEEe
Q 004270 272 ISLHFFANEPVLMSASADNSIKMWIF 297 (764)
Q Consensus 272 ~~l~~~~~~~~l~s~~~d~~i~vw~~ 297 (764)
..++.- ....+....+|.|..|=.
T Consensus 332 ~~va~G--~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 332 VQVSCG--WRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp EEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred EEEEeC--CCeEEEEeCCCCEEEecC
Confidence 555442 234444456777877743
No 389
>4ftd_A Uncharacterized protein; 6-bladed-beta-propeller, immunoglobulin-like, carbohydrate metabolism, structural genomics; 1.91A {Bacteroides eggerthii}
Probab=22.81 E-value=5.9e+02 Score=25.58 Aligned_cols=196 Identities=10% Similarity=0.042 Sum_probs=93.7
Q ss_pred eEEEEEeCCeEEEEECCe--EEEEec---------Cc--eEEE----ecccccceEEEEEeCCEEEEEec----CCcEEE
Q 004270 59 IRALASYRDYTFAAYGNH--IAVVKR---------AH--QVAT----WSRHSAKVNLLLLFGEHILSIDI----DGNMFI 117 (764)
Q Consensus 59 I~~~~~~~~~~~~a~g~~--i~vw~~---------~~--~~~~----~~~h~~~v~~l~~~g~~l~s~~~----dg~v~v 117 (764)
.++..|..+.++++..+. ++.|+- +. .+.. ..|+...+...+-++..++.++. .+.++|
T Consensus 138 trG~~~~s~~V~v~~r~~~~v~~~dHll~~~~~~ag~~~~~~l~~TGvsGgtf~~~m~a~~~G~Iy~anLsg~~gs~fkI 217 (453)
T 4ftd_A 138 TRCASYDGEHVLVVSRPTTPNFHTPHLLKVSDLKRGEIKPIMLDVTGVKGGTYDYNMGALINGHVYLSSLSGGKVSPFKI 217 (453)
T ss_dssp EEEEEECSSEEEEEECCCTTTCCCSEEEEHHHHHTTCCCCEECCCTTCCCSSEEEEEEEEETTEEEEEEEBCSTTSCEEE
T ss_pred ccccccCCceEEEEecCCceEEecccccchhhcccCcccccccccceeeccceEEEEEEecCCCEEEEeccCCCCCceEE
Confidence 567888888999888554 544541 11 1111 23443333333334444444432 345888
Q ss_pred EEccCCcccccceeeEecC--------CccccEEEEeCCCCCCEEEEEeC--CCcEEEEeCCCCeEE-------EEEcCC
Q 004270 118 WAFKGIEENLAPVGHVKLD--------DKFTPTCIMHPDTYLNKVIVGSQ--EGSLQLWNISTKKKL-------YEFKGW 180 (764)
Q Consensus 118 Wd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~p~~~~~~l~~~~~--dg~i~iwd~~~~~~~-------~~~~~h 180 (764)
|...+.....+.+..+... .+....+.-.+++ +-.++... ...+..|.+..+... ....+-
T Consensus 218 YrW~~~ts~Pe~i~s~~v~~~~gTg~R~Gd~isv~GD~~g--Na~I~~~~n~s~~~~rwtVtng~l~~~~~~~v~~~~~~ 295 (453)
T 4ftd_A 218 YYWETPTSNPEVIANINVGNIPGAGNRHGDNASYNIDENG--NGFIFFGDNAATEFLKVPISGHKTVDIGNIKVLPSKSD 295 (453)
T ss_dssp EEESSTTSCCEEEEEECGGGSTTCCSCBCSCCEEEECTTS--CEEEEEEBTTSSEEEEEEEETTTEECGGGCEEEECCGG
T ss_pred EEeCCCCCCceeEEEeccccCCcccccccceEEEEEcCCC--CEEEEECCCCceeEEEEEEECCeEcCCCCceeeccCCC
Confidence 8887765533333333311 1222445555666 33333323 335778887776542 111222
Q ss_pred CCCeEEEEEcCC-CCEEEEEEcCCeEEEEEccCCceEEEEecc-CCCCEEEEEEeeCCCCEEEEEe--------CCCcEE
Q 004270 181 GSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTHS-MRGAVTALAFSSDGQPLLASGA--------SSGVIS 250 (764)
Q Consensus 181 ~~~i~~~~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~l~fs~d~~~~l~sg~--------~dg~i~ 250 (764)
......+.+--+ ..++..+. +-...+++.. +......... .......+.|. ...+|+.+. .+..|+
T Consensus 296 g~~~~~v~~~gnT~~y~~sg~-~~p~~Ly~~~-g~~~~~sai~~~a~~~~vv~FN--~~rYLi~~~~~~~g~~~~~~~l~ 371 (453)
T 4ftd_A 296 ATMVTNVYRVGDTDQYLWSGI-RVPVTLVDES-LGEKYKSKIAGEAVAPKVVTFN--EERYLLVCTAGQGAASKASIALE 371 (453)
T ss_dssp GCSSEEEEECTTSSCEEEEET-TEEEEEECTT-CCEEEECSCCTTEEEEEEEEET--TEEEEEEEECCBSTTCCCCCEEE
T ss_pred ceeeeeeEEcCcccceeeccc-cCceeEEecC-CCEEEeeeccccCCCcceEEEc--cccEEEEEEecccCccCCCceEE
Confidence 223344444333 44555544 3356666644 4433322111 01123344443 333554432 234899
Q ss_pred EEECCCceee
Q 004270 251 IWNLEKRRLQ 260 (764)
Q Consensus 251 iwd~~~~~~~ 260 (764)
+||+.++..+
T Consensus 372 vYDIS~g~~~ 381 (453)
T 4ftd_A 372 VYDLTKGETI 381 (453)
T ss_dssp EEECCSSSSH
T ss_pred EEECCCCcch
Confidence 9999887543
No 390
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=21.95 E-value=7e+02 Score=26.10 Aligned_cols=175 Identities=10% Similarity=0.100 Sum_probs=89.7
Q ss_pred CCEEEEEeCCCcEEEEEeecccccccccchhhhHHHhhccchh-------hhhccCceeEeeecccccccccceeEeee-
Q 004270 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE-------EELKLKPVIAFDCAEIRERDWCNVVTCHM- 397 (764)
Q Consensus 326 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 397 (764)
...++.++.||.++.++.. +.+...+...........+.... ..+...|+.. +.. ....|..++.++.
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~-Dv~--~~g~wrtvLvggmg 160 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVA-DAF--FGGAWHTVLIGSLR 160 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEE-EEE--ETTEEEEEEEEECT
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEE-EEE--eCCcceEEEEEecC
Confidence 3578899999999999987 66555554444443333322111 1112223321 111 1245777776654
Q ss_pred -CCceEEEEEccceeecce--eecC----CCCCCCCeEEEEEccCCCEEEEEec-------CCcEEEEECcCCcccceec
Q 004270 398 -DTAQAYVWRLQNFVLGEH--ILRP----CPENPTAVKACTISACGNFAVLGTA-------GGWIERFNLQSGISRGSYL 463 (764)
Q Consensus 398 -~~~~~~~w~~~~~~~~~~--~~~~----~~~~~~~v~~~~~s~~g~~l~~g~~-------~g~i~i~~~~~~~~~~~~~ 463 (764)
+...++..|+.+...... .+.. .-+..-.-..+.--.+++++++-+. ...|+++|+.+|..+..+.
T Consensus 161 ~GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~ 240 (570)
T 3hx6_A 161 AGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLE 240 (570)
T ss_dssp TSCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEe
Confidence 345666666654322111 1110 0011111122333346776544322 3489999999999888765
Q ss_pred CccccccccccCcEEEEE-ECC--CC--CEEEEEeCCCeEEEEECCCCC
Q 004270 464 DMSERSNYAHNGEVVGVA-CDS--TN--TLMISAGYHGDIKVWDFKGRD 507 (764)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~-~~~--~~--~~l~s~~~dg~v~iwd~~~~~ 507 (764)
.... ..-...+..++ ++. |+ ..+..+...|.|.-+|+....
T Consensus 241 ~~~~---~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 241 VTGR---TGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp ECCS---TTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred cCCC---CccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 2110 01112222322 333 33 578899999999888987654
Done!