Query 004271
Match_columns 764
No_of_seqs 408 out of 1783
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 20:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 3.5E-90 7.6E-95 706.7 22.6 228 274-502 1-229 (229)
2 PF01852 START: START domain; 99.8 3.9E-18 8.5E-23 171.3 13.4 203 279-502 1-205 (206)
3 smart00234 START in StAR and p 99.7 9.1E-17 2E-21 161.9 18.8 201 280-503 2-206 (206)
4 KOG0842 Transcription factor t 99.7 5.8E-17 1.3E-21 172.6 10.7 70 103-172 147-216 (307)
5 KOG0488 Transcription factor B 99.6 1.3E-16 2.8E-21 171.9 5.5 68 103-170 166-233 (309)
6 KOG0483 Transcription factor H 99.6 2.2E-16 4.8E-21 159.7 6.3 79 114-192 55-133 (198)
7 KOG0484 Transcription factor P 99.6 6.4E-17 1.4E-21 145.6 1.5 64 106-169 14-77 (125)
8 KOG0485 Transcription factor N 99.6 5.6E-16 1.2E-20 155.5 7.0 64 106-169 101-164 (268)
9 KOG0494 Transcription factor C 99.6 8.4E-16 1.8E-20 157.5 6.6 78 105-182 136-214 (332)
10 KOG0843 Transcription factor E 99.6 7.1E-16 1.5E-20 151.3 4.2 64 108-171 101-164 (197)
11 KOG0489 Transcription factor z 99.6 4.9E-16 1.1E-20 164.3 2.0 63 108-170 158-220 (261)
12 KOG0487 Transcription factor A 99.6 7.4E-15 1.6E-19 156.7 9.2 64 107-170 233-296 (308)
13 KOG2251 Homeobox transcription 99.5 3.8E-15 8.1E-20 150.7 4.7 67 105-171 33-99 (228)
14 KOG0493 Transcription factor E 99.5 1.5E-14 3.2E-19 148.5 8.5 61 110-170 247-307 (342)
15 KOG0850 Transcription factor D 99.5 7.6E-15 1.7E-19 149.0 5.7 68 102-169 115-182 (245)
16 KOG0492 Transcription factor M 99.5 1.5E-14 3.2E-19 144.6 5.4 64 107-170 142-205 (246)
17 KOG0844 Transcription factor E 99.5 4.4E-14 9.5E-19 147.7 7.1 62 107-168 179-240 (408)
18 KOG0848 Transcription factor C 99.5 1.7E-14 3.6E-19 148.8 2.1 64 107-170 197-260 (317)
19 PF00046 Homeobox: Homeobox do 99.4 3.6E-14 7.9E-19 115.7 3.0 57 110-166 1-57 (57)
20 KOG0486 Transcription factor P 99.4 5.9E-13 1.3E-17 140.4 5.7 64 107-170 110-173 (351)
21 TIGR01565 homeo_ZF_HD homeobox 99.3 1.6E-12 3.4E-17 107.5 5.2 53 109-161 1-57 (58)
22 KOG0491 Transcription factor B 99.3 2.1E-13 4.6E-18 132.1 -0.4 66 107-172 98-163 (194)
23 smart00389 HOX Homeodomain. DN 99.3 1.6E-12 3.5E-17 105.2 2.9 55 111-165 2-56 (56)
24 cd00086 homeodomain Homeodomai 99.3 2.3E-12 5E-17 104.9 3.3 56 111-166 2-57 (59)
25 cd00177 START Lipid-binding ST 99.3 8E-11 1.7E-15 115.7 14.7 190 283-500 2-191 (193)
26 COG5576 Homeodomain-containing 99.2 8.9E-12 1.9E-16 122.4 4.2 63 109-171 51-113 (156)
27 KOG4577 Transcription factor L 99.2 2.5E-11 5.5E-16 126.5 5.4 73 110-182 168-240 (383)
28 KOG0847 Transcription factor, 99.1 1E-11 2.3E-16 125.1 1.2 63 107-169 165-227 (288)
29 cd08871 START_STARD10-like Lip 99.1 3.2E-09 6.9E-14 109.5 18.6 201 282-514 9-213 (222)
30 KOG3802 Transcription factor O 99.1 6.2E-11 1.4E-15 129.3 4.9 62 106-167 291-352 (398)
31 cd08868 START_STARD1_3_like Ch 99.1 3.3E-09 7.2E-14 108.3 15.9 196 277-504 6-208 (208)
32 cd08867 START_STARD4_5_6-like 99.0 6.9E-09 1.5E-13 105.9 16.6 194 278-501 4-205 (206)
33 KOG0490 Transcription factor, 99.0 1.8E-10 4E-15 118.1 3.8 64 106-169 57-120 (235)
34 cd08904 START_STARD6-like Lipi 98.9 4.4E-08 9.5E-13 100.6 15.2 171 278-471 4-177 (204)
35 KOG0849 Transcription factor P 98.9 1.3E-09 2.8E-14 120.3 4.0 67 103-169 170-236 (354)
36 cd08903 START_STARD5-like Lipi 98.8 3.4E-07 7.4E-12 94.1 17.5 193 278-502 4-206 (208)
37 cd08869 START_RhoGAP C-termina 98.6 4.5E-07 9.7E-12 92.4 14.4 169 282-478 4-175 (197)
38 cd08905 START_STARD1-like Chol 98.6 4.4E-07 9.5E-12 93.3 13.1 192 277-502 6-207 (209)
39 cd08909 START_STARD13-like C-t 98.5 1.2E-06 2.6E-11 90.1 14.3 135 329-478 47-183 (205)
40 PLN00188 enhanced disease resi 98.5 1.4E-06 3.1E-11 102.2 13.8 129 334-474 227-365 (719)
41 cd08902 START_STARD4-like Lipi 98.4 4.9E-06 1.1E-10 85.1 15.1 190 278-500 4-200 (202)
42 cd08906 START_STARD3-like Chol 98.4 9.5E-06 2.1E-10 83.6 17.4 195 277-502 6-207 (209)
43 KOG1168 Transcription factor A 98.3 6E-07 1.3E-11 94.4 3.9 62 108-169 308-369 (385)
44 KOG0775 Transcription factor S 98.2 6.3E-07 1.4E-11 93.9 3.7 51 116-166 183-233 (304)
45 cd08908 START_STARD12-like C-t 98.2 2.3E-05 5E-10 80.8 13.8 169 281-478 11-182 (204)
46 cd08910 START_STARD2-like Lipi 98.1 5.7E-05 1.2E-09 77.7 14.2 155 330-503 45-206 (207)
47 cd08877 START_2 Uncharacterize 98.1 6.7E-05 1.4E-09 77.2 14.2 200 277-503 3-214 (215)
48 cd08870 START_STARD2_7-like Li 97.9 0.00047 1E-08 70.8 16.7 193 285-503 8-208 (209)
49 cd08876 START_1 Uncharacterize 97.9 0.00027 5.8E-09 71.0 13.8 153 334-501 41-194 (195)
50 cd08874 START_STARD9-like C-te 97.8 0.00012 2.6E-09 75.5 11.0 134 327-475 43-181 (205)
51 cd08907 START_STARD8-like C-te 97.8 0.00011 2.4E-09 75.5 9.8 165 281-472 11-178 (205)
52 KOG0774 Transcription factor P 97.8 1.6E-05 3.4E-10 83.0 3.0 58 110-167 189-249 (334)
53 PF05920 Homeobox_KN: Homeobox 97.7 9E-06 1.9E-10 62.8 0.0 35 129-163 6-40 (40)
54 KOG0490 Transcription factor, 97.6 5.9E-05 1.3E-09 77.5 4.2 66 104-169 148-213 (235)
55 cd08872 START_STARD11-like Cer 97.6 0.0016 3.5E-08 68.6 14.8 196 281-502 8-225 (235)
56 cd08911 START_STARD7-like Lipi 97.4 0.0032 6.8E-08 64.9 14.7 156 334-503 45-206 (207)
57 KOG2252 CCAAT displacement pro 97.3 0.00018 3.8E-09 82.2 3.8 58 107-164 418-475 (558)
58 cd08871 START_STARD10-like Lip 97.2 0.026 5.7E-07 58.4 18.7 171 548-760 21-201 (222)
59 cd08873 START_STARD14_15-like 97.1 0.0046 1E-07 65.2 11.5 121 337-468 80-203 (235)
60 cd08874 START_STARD9-like C-te 97.0 0.0084 1.8E-07 62.0 12.3 149 547-729 19-176 (205)
61 cd08904 START_STARD6-like Lipi 96.9 0.04 8.6E-07 57.1 16.4 171 549-759 21-203 (204)
62 cd08869 START_RhoGAP C-termina 96.6 0.12 2.7E-06 52.8 17.2 171 548-761 17-196 (197)
63 cd08914 START_STARD15-like Lip 96.6 0.016 3.5E-07 61.2 10.8 130 335-478 79-212 (236)
64 cd08907 START_STARD8-like C-te 96.5 0.17 3.7E-06 52.5 17.6 171 547-760 24-203 (205)
65 cd08913 START_STARD14-like Lip 96.4 0.039 8.6E-07 58.5 12.4 128 337-477 84-215 (240)
66 KOG1146 Homeobox protein [Gene 96.3 0.0039 8.5E-08 77.4 4.7 61 109-169 903-963 (1406)
67 cd08877 START_2 Uncharacterize 96.2 0.24 5.2E-06 51.1 16.9 114 536-665 10-129 (215)
68 cd08868 START_STARD1_3_like Ch 95.9 0.67 1.5E-05 47.5 18.6 129 549-697 23-161 (208)
69 cd00177 START Lipid-binding ST 95.8 0.51 1.1E-05 46.3 16.5 144 550-729 15-165 (193)
70 cd08903 START_STARD5-like Lipi 95.5 0.52 1.1E-05 48.7 15.8 175 548-760 20-206 (208)
71 smart00234 START in StAR and p 95.5 0.57 1.2E-05 47.3 15.8 132 549-697 18-158 (206)
72 cd08870 START_STARD2_7-like Li 95.5 0.61 1.3E-05 48.0 16.1 105 550-665 22-133 (209)
73 cd08867 START_STARD4_5_6-like 95.4 1.7 3.6E-05 44.5 19.2 143 530-697 8-161 (206)
74 cd08876 START_1 Uncharacterize 95.3 1.1 2.4E-05 45.0 17.2 58 547-612 14-71 (195)
75 cd08906 START_STARD3-like Chol 95.2 1.2 2.7E-05 46.1 17.5 144 531-696 8-161 (209)
76 KOG0773 Transcription factor M 94.8 0.034 7.4E-07 61.4 4.9 58 109-166 239-299 (342)
77 cd08908 START_STARD12-like C-t 94.4 1.4 2.9E-05 45.9 15.1 169 551-760 28-202 (204)
78 cd08873 START_STARD14_15-like 94.1 0.88 1.9E-05 48.3 13.4 66 548-625 53-118 (235)
79 cd08875 START_ArGLABRA2_like C 93.8 2.4 5.1E-05 44.9 15.7 183 529-736 4-204 (229)
80 cd08911 START_STARD7-like Lipi 93.3 2.4 5.1E-05 43.8 14.8 176 548-760 19-205 (207)
81 PF01852 START: START domain; 92.9 3.9 8.5E-05 41.1 15.5 165 532-731 2-175 (206)
82 cd08914 START_STARD15-like Lip 92.9 1.4 3E-05 46.9 12.4 56 547-612 53-108 (236)
83 cd08909 START_STARD13-like C-t 92.8 3.7 8E-05 42.8 15.2 169 550-760 27-203 (205)
84 PF11569 Homez: Homeodomain le 92.2 0.033 7.2E-07 46.2 -0.5 43 120-162 9-51 (56)
85 cd08910 START_STARD2-like Lipi 92.0 4.4 9.6E-05 41.9 14.6 90 547-652 22-116 (207)
86 cd08902 START_STARD4-like Lipi 91.7 7.6 0.00017 40.4 15.7 58 548-613 21-78 (202)
87 cd08905 START_STARD1-like Chol 90.6 16 0.00035 37.8 17.1 193 528-760 5-207 (209)
88 KOG2761 START domain-containin 90.3 1.7 3.6E-05 45.6 9.4 139 343-500 63-211 (219)
89 cd08866 SRPBCC_11 Ligand-bindi 89.8 4.7 0.0001 37.9 11.5 133 337-502 2-143 (144)
90 cd08860 TcmN_ARO-CYC_like N-te 89.5 4.1 8.8E-05 39.8 11.0 138 338-503 5-144 (146)
91 cd05018 CoxG Carbon monoxide d 88.9 4.4 9.5E-05 37.6 10.5 120 339-483 6-125 (144)
92 KOG4196 bZIP transcription fac 88.3 1.3 2.8E-05 42.8 6.3 86 114-235 22-108 (135)
93 cd08864 SRPBCC_DUF3074 DUF3074 87.3 2.2 4.8E-05 44.4 8.1 102 369-476 76-184 (208)
94 PRK09413 IS2 repressor TnpA; R 87.2 1.3 2.8E-05 41.9 5.8 41 114-159 11-52 (121)
95 cd07819 SRPBCC_2 Ligand-bindin 86.1 15 0.00033 33.8 12.3 132 338-500 6-139 (140)
96 cd07821 PYR_PYL_RCAR_like Pyra 85.3 16 0.00035 33.4 12.0 134 340-502 7-140 (140)
97 PRK15422 septal ring assembly 84.2 4.4 9.6E-05 36.0 7.0 58 167-240 14-75 (79)
98 cd07813 COQ10p_like Coenzyme Q 83.1 14 0.0003 34.6 10.8 135 338-503 3-137 (138)
99 KOG4005 Transcription factor X 82.9 14 0.0003 39.3 11.2 39 158-196 82-122 (292)
100 cd08913 START_STARD14-like Lip 82.1 2.2 4.7E-05 45.5 5.3 128 547-697 56-195 (240)
101 COG3074 Uncharacterized protei 82.0 6.3 0.00014 34.3 6.9 55 171-241 18-76 (79)
102 PF06005 DUF904: Protein of un 81.7 6.3 0.00014 34.5 7.1 46 171-239 18-67 (72)
103 PF10604 Polyketide_cyc2: Poly 80.1 15 0.00033 33.6 9.7 35 339-377 7-41 (139)
104 cd08861 OtcD1_ARO-CYC_like N-t 80.0 22 0.00048 33.2 10.9 137 339-502 4-141 (142)
105 KOG3623 Homeobox transcription 79.9 0.95 2.1E-05 54.1 1.8 49 121-169 568-616 (1007)
106 PF04218 CENP-B_N: CENP-B N-te 79.8 1.6 3.4E-05 35.7 2.6 47 110-161 1-47 (53)
107 cd07817 SRPBCC_8 Ligand-bindin 79.1 35 0.00075 31.4 11.8 134 339-502 5-138 (139)
108 PLN00188 enhanced disease resi 79.0 7.8 0.00017 47.1 9.0 154 547-729 195-361 (719)
109 cd05018 CoxG Carbon monoxide d 78.5 20 0.00044 33.1 10.1 28 585-612 4-31 (144)
110 TIGR00219 mreC rod shape-deter 77.2 4.1 9E-05 44.3 5.6 41 173-232 68-108 (283)
111 cd08872 START_STARD11-like Cer 76.8 44 0.00096 35.4 13.1 97 544-653 20-122 (235)
112 PF02183 HALZ: Homeobox associ 75.6 6.5 0.00014 31.4 4.9 41 168-238 2-42 (45)
113 cd08865 SRPBCC_10 Ligand-bindi 74.8 40 0.00087 30.6 10.9 136 339-502 4-139 (140)
114 cd07822 SRPBCC_4 Ligand-bindin 72.0 24 0.00053 32.2 8.7 51 449-502 91-141 (141)
115 PRK10724 hypothetical protein; 67.9 1.1E+02 0.0023 30.6 12.6 137 337-504 18-154 (158)
116 PF02183 HALZ: Homeobox associ 67.6 22 0.00048 28.4 6.2 25 170-194 11-35 (45)
117 cd07818 SRPBCC_1 Ligand-bindin 66.7 58 0.0013 30.7 10.3 51 451-502 99-149 (150)
118 PF01527 HTH_Tnp_1: Transposas 64.4 0.73 1.6E-05 39.3 -3.0 44 111-158 2-45 (76)
119 cd07824 SRPBCC_6 Ligand-bindin 60.2 1.4E+02 0.0031 28.3 11.7 133 341-498 8-143 (146)
120 PRK13922 rod shape-determining 59.5 16 0.00035 39.2 5.5 40 173-232 71-110 (276)
121 TIGR03752 conj_TIGR03752 integ 55.9 28 0.0006 40.6 6.8 28 169-196 78-105 (472)
122 smart00338 BRLZ basic region l 55.6 54 0.0012 27.6 6.9 39 170-231 25-63 (65)
123 PF14389 Lzipper-MIP1: Leucine 54.5 96 0.0021 28.1 8.8 70 162-236 6-75 (88)
124 PF12711 Kinesin-relat_1: Kine 53.5 52 0.0011 30.0 6.8 47 175-238 21-67 (86)
125 KOG1146 Homeobox protein [Gene 53.2 8.1 0.00018 49.5 2.2 61 109-169 444-504 (1406)
126 KOG4571 Activating transcripti 51.2 36 0.00079 37.3 6.4 44 166-232 243-286 (294)
127 PF00170 bZIP_1: bZIP transcri 50.9 85 0.0018 26.3 7.4 23 170-192 25-47 (64)
128 cd07812 SRPBCC START/RHO_alpha 50.0 1.7E+02 0.0037 25.4 9.8 36 339-378 4-39 (141)
129 KOG0971 Microtubule-associated 49.2 57 0.0012 40.8 8.1 54 176-237 337-390 (1243)
130 KOG3119 Basic region leucine z 47.6 62 0.0013 35.1 7.6 26 216-241 230-255 (269)
131 PF09726 Macoilin: Transmembra 46.7 2E+02 0.0044 35.5 12.5 19 176-194 458-476 (697)
132 PF07407 Seadorna_VP6: Seadorn 45.9 29 0.00063 38.6 4.7 39 659-698 335-375 (420)
133 cd07823 SRPBCC_5 Ligand-bindin 45.1 10 0.00022 36.2 1.1 26 586-611 3-28 (146)
134 PRK13169 DNA replication intia 44.8 88 0.0019 29.7 7.2 20 216-235 37-56 (110)
135 PF06156 DUF972: Protein of un 44.3 77 0.0017 29.9 6.7 21 216-236 37-57 (107)
136 KOG4403 Cell surface glycoprot 42.3 66 0.0014 37.1 6.9 21 281-301 402-422 (575)
137 KOG4343 bZIP transcription fac 41.3 77 0.0017 37.5 7.3 21 216-236 317-337 (655)
138 cd07819 SRPBCC_2 Ligand-bindin 41.1 20 0.00044 33.0 2.4 29 584-612 4-32 (140)
139 cd08865 SRPBCC_10 Ligand-bindi 40.8 18 0.00039 33.0 2.0 27 585-611 2-28 (140)
140 PF10604 Polyketide_cyc2: Poly 40.2 27 0.00058 31.9 3.1 28 584-611 4-31 (139)
141 PRK13729 conjugal transfer pil 39.6 1.4E+02 0.0029 35.2 9.0 49 169-233 74-122 (475)
142 KOG0709 CREB/ATF family transc 38.4 1.9E+02 0.004 34.0 9.7 91 113-240 218-318 (472)
143 COG4026 Uncharacterized protei 37.8 91 0.002 33.2 6.6 43 169-234 147-189 (290)
144 cd07821 PYR_PYL_RCAR_like Pyra 37.6 25 0.00055 32.1 2.4 27 585-611 4-30 (140)
145 cd08866 SRPBCC_11 Ligand-bindi 36.3 23 0.00049 33.2 1.9 28 585-612 2-29 (144)
146 COG1792 MreC Cell shape-determ 35.9 95 0.0021 34.0 6.8 15 330-344 158-172 (284)
147 cd08901 SRPBCC_CalC_Aha1-like_ 35.8 23 0.0005 33.5 1.9 27 584-610 2-28 (136)
148 cd08862 SRPBCC_Smu440-like Lig 35.7 28 0.0006 32.1 2.4 30 583-612 2-31 (138)
149 cd07817 SRPBCC_8 Ligand-bindin 34.9 27 0.00059 32.2 2.2 28 585-612 3-30 (139)
150 TIGR00219 mreC rod shape-deter 34.6 88 0.0019 34.2 6.3 45 176-239 64-108 (283)
151 cd07825 SRPBCC_7 Ligand-bindin 34.3 31 0.00067 32.3 2.5 27 585-611 3-29 (144)
152 PF04880 NUDE_C: NUDE protein, 33.9 49 0.0011 33.6 3.9 19 216-234 25-43 (166)
153 cd07823 SRPBCC_5 Ligand-bindin 33.5 4.2E+02 0.0091 25.1 11.5 29 338-366 3-31 (146)
154 cd06171 Sigma70_r4 Sigma70, re 33.5 14 0.0003 28.0 -0.0 44 114-162 9-52 (55)
155 cd07814 SRPBCC_CalC_Aha1-like 33.2 25 0.00053 32.3 1.6 27 585-611 3-29 (139)
156 smart00340 HALZ homeobox assoc 32.5 53 0.0012 26.1 3.0 21 217-237 14-34 (44)
157 cd07818 SRPBCC_1 Ligand-bindin 32.1 89 0.0019 29.4 5.3 31 584-614 4-34 (150)
158 cd07812 SRPBCC START/RHO_alpha 31.9 31 0.00067 30.3 2.0 26 586-611 3-28 (141)
159 PF04545 Sigma70_r4: Sigma-70, 31.6 27 0.00058 27.6 1.3 38 115-157 4-41 (50)
160 PHA03162 hypothetical protein; 31.2 1.7E+02 0.0037 28.7 6.8 45 171-219 13-57 (135)
161 PF04967 HTH_10: HTH DNA bindi 30.7 50 0.0011 27.3 2.8 37 116-152 1-39 (53)
162 KOG1962 B-cell receptor-associ 30.0 1.6E+02 0.0035 31.2 7.0 14 124-137 90-105 (216)
163 PRK06266 transcription initiat 29.5 50 0.0011 33.7 3.2 34 197-232 137-170 (178)
164 COG5481 Uncharacterized conser 29.4 1.1E+02 0.0024 26.0 4.6 56 172-237 5-60 (67)
165 PRK14872 rod shape-determining 28.5 1E+02 0.0022 34.7 5.7 22 173-194 59-80 (337)
166 PRK00888 ftsB cell division pr 28.5 64 0.0014 30.2 3.5 44 152-196 16-59 (105)
167 cd07822 SRPBCC_4 Ligand-bindin 28.3 47 0.001 30.3 2.6 26 586-611 4-29 (141)
168 KOG0999 Microtubule-associated 27.9 2.6E+02 0.0056 33.6 8.7 90 158-293 150-239 (772)
169 PRK10884 SH3 domain-containing 27.0 1.9E+02 0.0041 30.4 6.9 41 176-232 130-170 (206)
170 KOG2761 START domain-containin 26.6 28 0.00061 36.8 0.8 178 546-760 25-213 (219)
171 PRK03975 tfx putative transcri 26.0 65 0.0014 31.9 3.1 46 114-165 5-50 (141)
172 cd07820 SRPBCC_3 Ligand-bindin 25.9 43 0.00093 31.5 1.9 26 586-611 3-28 (137)
173 PRK13922 rod shape-determining 25.5 1.5E+02 0.0032 31.9 6.1 44 173-239 64-110 (276)
174 TIGR03752 conj_TIGR03752 integ 25.3 1.3E+02 0.0028 35.3 5.8 28 169-196 71-98 (472)
175 PHA01817 hypothetical protein 25.2 1.5E+02 0.0033 32.7 6.0 29 271-300 209-237 (479)
176 KOG3156 Uncharacterized membra 24.6 2.6E+02 0.0056 29.6 7.3 43 173-237 96-138 (220)
177 cd01106 HTH_TipAL-Mta Helix-Tu 24.2 1.7E+02 0.0037 26.6 5.5 37 112-161 35-71 (103)
178 PRK10884 SH3 domain-containing 24.1 1.8E+02 0.0039 30.5 6.2 19 217-235 134-152 (206)
179 PF07888 CALCOCO1: Calcium bin 23.9 3.1E+02 0.0067 33.0 8.7 27 214-240 430-456 (546)
180 cd04765 HTH_MlrA-like_sg2 Heli 23.9 95 0.0021 28.5 3.7 65 111-193 34-98 (99)
181 PF15058 Speriolin_N: Sperioli 23.0 1.6E+02 0.0035 30.7 5.4 39 174-236 8-46 (200)
182 PF06637 PV-1: PV-1 protein (P 23.0 4.5E+02 0.0097 30.3 9.2 31 124-154 265-298 (442)
183 PF12824 MRP-L20: Mitochondria 22.9 3.6E+02 0.0078 27.3 7.9 48 112-161 82-129 (164)
184 PF08327 AHSA1: Activator of H 22.8 1E+02 0.0022 27.8 3.7 20 591-610 1-20 (124)
185 cd08898 SRPBCC_CalC_Aha1-like_ 22.7 62 0.0013 30.1 2.3 28 585-612 4-31 (145)
186 PF02724 CDC45: CDC45-like pro 22.6 1.2E+02 0.0025 36.9 5.1 35 115-149 196-233 (622)
187 PF06156 DUF972: Protein of un 22.4 3.2E+02 0.007 25.8 6.9 27 216-242 30-56 (107)
188 cd07824 SRPBCC_6 Ligand-bindin 22.4 58 0.0013 31.0 2.1 28 585-612 4-31 (146)
189 PF06785 UPF0242: Uncharacteri 22.4 1.7E+02 0.0038 32.9 5.8 93 126-240 26-124 (401)
190 KOG4005 Transcription factor X 21.9 2.4E+02 0.0053 30.4 6.5 31 273-303 214-244 (292)
191 PHA00728 hypothetical protein 21.7 1.1E+02 0.0024 29.6 3.7 26 215-240 5-30 (151)
192 PRK12495 hypothetical protein; 21.0 1.3E+02 0.0027 32.1 4.2 12 196-207 42-53 (226)
193 cd08893 SRPBCC_CalC_Aha1-like_ 21.0 57 0.0012 29.9 1.7 26 586-611 4-29 (136)
194 TIGR03299 LGT_TIGR03299 phage/ 20.9 3.7E+02 0.0081 30.0 8.1 93 562-670 57-156 (309)
195 KOG3119 Basic region leucine z 20.9 6.6E+02 0.014 27.3 9.9 20 216-235 237-256 (269)
196 PF15254 CCDC14: Coiled-coil d 20.9 1.3E+02 0.0029 37.2 4.9 53 171-235 455-507 (861)
197 TIGR02051 MerR Hg(II)-responsi 20.8 3.8E+02 0.0082 25.4 7.2 38 110-160 32-69 (124)
198 COG1675 TFA1 Transcription ini 20.8 1.2E+02 0.0026 31.2 3.9 44 190-235 125-169 (176)
199 PTZ00454 26S protease regulato 20.7 2.5E+02 0.0055 32.2 7.1 41 173-236 24-64 (398)
200 PRK02224 chromosome segregatio 20.6 3.4E+02 0.0075 33.9 8.8 16 195-210 450-465 (880)
201 TIGR02449 conserved hypothetic 20.5 5E+02 0.011 22.6 7.0 18 175-192 11-28 (65)
202 cd00569 HTH_Hin_like Helix-tur 20.4 90 0.002 20.8 2.3 37 115-156 5-41 (42)
203 cd04766 HTH_HspR Helix-Turn-He 20.2 1.9E+02 0.0041 25.8 4.8 55 112-195 35-89 (91)
204 TIGR01069 mutS2 MutS2 family p 20.1 5.8E+02 0.012 32.0 10.4 21 134-154 480-500 (771)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=3.5e-90 Score=706.70 Aligned_cols=228 Identities=52% Similarity=0.908 Sum_probs=221.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHh
Q 004271 274 KSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSF 353 (764)
Q Consensus 274 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l 353 (764)
|++|++||++||+||++||++++|||++++++++|+||+|||.++||+.. +.+|.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~-~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG-GSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcC-CCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 57899999999999999999999999999988899999999999999998 89999999999999999999999999999
Q ss_pred cChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCCcEEEEEEeccCccc
Q 004271 354 TDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEE 433 (764)
Q Consensus 354 mD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~ 433 (764)
||+++|.++||+||++|+|++||++|++|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cc-cCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 004271 434 NI-DASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502 (764)
Q Consensus 434 ~~-~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ce 502 (764)
.+ .++++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 33 4468999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.76 E-value=3.9e-18 Score=171.30 Aligned_cols=203 Identities=20% Similarity=0.243 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhcChh-
Q 004271 279 ELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDVN- 357 (764)
Q Consensus 279 ~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~- 357 (764)
++|.++|.+++++++.++.-|....+. -+.+.|.+..+.. .+..+..-|..++|...+.++++.|+|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~~------~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~ 70 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDK----KNGDVYYKKVSPS------DSCPIKMFKAEGVVPASPEQVVEDLLDDRE 70 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEE----TTTCEEEEEEECS------SSTSCEEEEEEEEESSCHHHHHHHHHCGGG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEcc----CCCeEEEEEeCcc------ccccceEEEEEEEEcCChHHHHHHHHhhHh
Confidence 589999999999999999999886521 1111222222111 12467889999999999999999999988
Q ss_pred hHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCCcEEEEEEeccCccccc-c
Q 004271 358 QWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-D 436 (764)
Q Consensus 358 ~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~-~ 436 (764)
+|-.++-.+ ++++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.-...+ .
T Consensus 71 ~Wd~~~~~~----~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~ 139 (206)
T PF01852_consen 71 QWDKMCVEA----EVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNS 139 (206)
T ss_dssp HHSTTEEEE----EEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-
T ss_pred hcccchhhh----eeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccccc
Confidence 999887754 999999986 468888899999999999 9999999999999999999999998655433 4
Q ss_pred CccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 004271 437 ASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502 (764)
Q Consensus 437 ~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ce 502 (764)
..++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--.+.+.+.|++|++
T Consensus 140 ~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 140 KGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 568999999999999999999999999999999999889999999999999999999999998765
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.74 E-value=9.1e-17 Score=161.85 Aligned_cols=201 Identities=32% Similarity=0.494 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhh-HHHHhcCh--
Q 004271 280 LVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPK-LVQSFTDV-- 356 (764)
Q Consensus 280 lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~-LVe~lmD~-- 356 (764)
-|+.++.|+++++...+..|....+....+ .|.+.+ .+.+..+.+-|..++|...+.+ +.++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~----~~~~~~-------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~ 70 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGD----EVRSIL-------SPGRSPGEASRAVGVVPMVCADLVEELMDDLRY 70 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcc----eEEEEc-------cCCCCceEEEEEEEEEecChHHHHHHHHhcccc
Confidence 367889999999999999999876411111 111111 1223567899999999999997 55666665
Q ss_pred -hhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCCcEEEEEEeccCccccc
Q 004271 357 -NQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENI 435 (764)
Q Consensus 357 -~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~ 435 (764)
.+|-..| ..+++++.++.+ ..+......+.. +| ++.|||.++|++++.++|.|+|+..|++.-..-+
T Consensus 71 r~~Wd~~~----~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~ 138 (206)
T smart00234 71 RPEWDKNV----AKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPP 138 (206)
T ss_pred hhhCchhc----ccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCC
Confidence 4454444 456999998754 234444344444 35 4559999999999999999999999998543222
Q ss_pred cCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 004271 436 DASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCER 503 (764)
Q Consensus 436 ~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cer 503 (764)
...++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999999999999999987789999999999999999999999999973
No 4
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.69 E-value=5.8e-17 Score=172.64 Aligned_cols=70 Identities=36% Similarity=0.560 Sum_probs=64.1
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhh
Q 004271 103 SKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHE 172 (764)
Q Consensus 103 ~~~~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e 172 (764)
...+++|||+|..||..|+.+||+.|+.++|++..+|++||+.|+||++||||||||||.|.||++..++
T Consensus 147 ~t~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 147 QTGKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 3346778889999999999999999999999999999999999999999999999999999999776643
No 5
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.64 E-value=1.3e-16 Score=171.92 Aligned_cols=68 Identities=35% Similarity=0.492 Sum_probs=63.4
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 103 SKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 103 ~~~~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
...+||+||.||.||..|+.+||+.|++.+|.+...|.+||+.|||+..|||+||||||+||||+...
T Consensus 166 ~~~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 166 RSTPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred cCCCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 34458889999999999999999999999999999999999999999999999999999999987665
No 6
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.63 E-value=2.2e-16 Score=159.72 Aligned_cols=79 Identities=39% Similarity=0.657 Sum_probs=74.4
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMRE 192 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e 192 (764)
.|||.+|+..||+.|+...|....++..||++|||.+|||++||||||||||.++...+...|+.+++.|+.+|..++.
T Consensus 55 ~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~ 133 (198)
T KOG0483|consen 55 RRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQS 133 (198)
T ss_pred ccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999988765553
No 7
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.63 E-value=6.4e-17 Score=145.63 Aligned_cols=64 Identities=31% Similarity=0.625 Sum_probs=61.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
++|+||.||+||..|+.+||+.|.+++|||...|+|||.++.|++.+|||||||||+|.||+.+
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999997544
No 8
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.61 E-value=5.6e-16 Score=155.46 Aligned_cols=64 Identities=30% Similarity=0.441 Sum_probs=60.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
..+|||.||.|+..|+..||..|+..+|++..+|.-||++|.|+|.|||+||||||.||||+..
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~a 164 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYA 164 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHh
Confidence 4566788999999999999999999999999999999999999999999999999999998654
No 9
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.60 E-value=8.4e-16 Score=157.50 Aligned_cols=78 Identities=33% Similarity=0.520 Sum_probs=70.2
Q ss_pred ccCCCCCC-cccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHH
Q 004271 105 NKKKKRKK-YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEK 182 (764)
Q Consensus 105 ~~rkkrr~-RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~ 182 (764)
++++|||+ ||.||..|+++||+.|++.+|||...|+-||-.+.|.|.+|+|||||||+||||..++.......+||.-
T Consensus 136 kkk~kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeygl 214 (332)
T KOG0494|consen 136 KKKKKRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYGL 214 (332)
T ss_pred ccccccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhcc
Confidence 34444554 8999999999999999999999999999999999999999999999999999999999988888777743
No 10
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.58 E-value=7.1e-16 Score=151.34 Aligned_cols=64 Identities=34% Similarity=0.538 Sum_probs=61.1
Q ss_pred CCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhh
Q 004271 108 KKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERH 171 (764)
Q Consensus 108 kkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~ 171 (764)
|.||.||.||++|+..||..|+.++|-...+|++||+.|+|++.||||||||||+|.||.+.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6678899999999999999999999999999999999999999999999999999999988774
No 11
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.57 E-value=4.9e-16 Score=164.28 Aligned_cols=63 Identities=30% Similarity=0.474 Sum_probs=59.4
Q ss_pred CCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 108 KKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 108 kkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
+.||.||.||..|+.+||+.|+.++|.+..+|.|+|..|.|+|+||||||||||+||||..+.
T Consensus 158 ~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~ 220 (261)
T KOG0489|consen 158 KSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKA 220 (261)
T ss_pred CCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Confidence 468889999999999999999999999999999999999999999999999999999986554
No 12
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.56 E-value=7.4e-15 Score=156.73 Aligned_cols=64 Identities=38% Similarity=0.508 Sum_probs=58.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
++.||+|--+|..|+.+||+.|-.|.|.+...|.||++.|+|++|||||||||||.|+||..++
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 5556666778999999999999999999999999999999999999999999999999987654
No 13
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.54 E-value=3.8e-15 Score=150.68 Aligned_cols=67 Identities=31% Similarity=0.588 Sum_probs=63.5
Q ss_pred ccCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhh
Q 004271 105 NKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERH 171 (764)
Q Consensus 105 ~~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~ 171 (764)
.+||.||.||+||.+|+++||..|.+++|||...|++||.+|+|.+.+|||||+|||+|+|+++..+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 3788999999999999999999999999999999999999999999999999999999999877653
No 14
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=148.51 Aligned_cols=61 Identities=38% Similarity=0.647 Sum_probs=57.3
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
||.||.||.+||+.|...|++++|.++.+|++||.+|+|+|.|||+||||+|+|.||-...
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTgs 307 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTGS 307 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccCC
Confidence 5679999999999999999999999999999999999999999999999999999975543
No 15
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.52 E-value=7.6e-15 Score=149.03 Aligned_cols=68 Identities=31% Similarity=0.505 Sum_probs=63.1
Q ss_pred CCcccCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 102 DSKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 102 ~~~~~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
...+.||.||.||-++.-||+.|.+.|++++|+--.+|.|||.+|||+..||||||||||.|.||..+
T Consensus 115 ~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 115 PNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred cCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHh
Confidence 34556788999999999999999999999999999999999999999999999999999999998655
No 16
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.50 E-value=1.5e-14 Score=144.65 Aligned_cols=64 Identities=38% Similarity=0.549 Sum_probs=59.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
+..||.|+-||.+|+..||+.|++.+|.+..+|.+++..|.|++.||||||||||+|.||.|+.
T Consensus 142 k~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQea 205 (246)
T KOG0492|consen 142 KPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEA 205 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHH
Confidence 4468889999999999999999999999999999999999999999999999999999986653
No 17
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.48 E-value=4.4e-14 Score=147.66 Aligned_cols=62 Identities=31% Similarity=0.433 Sum_probs=58.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
.+-||.||.||.+||..||+.|-+..|-+..+|.|||..|||.|.-|||||||||.|+||+.
T Consensus 179 dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQR 240 (408)
T KOG0844|consen 179 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 240 (408)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhh
Confidence 34588999999999999999999999999999999999999999999999999999999754
No 18
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.46 E-value=1.7e-14 Score=148.83 Aligned_cols=64 Identities=34% Similarity=0.477 Sum_probs=59.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
|.|-|.|..+|..|..+||+.|...+|.+..++.|||.-|+|+||||||||||||+|+||..++
T Consensus 197 RTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKK 260 (317)
T KOG0848|consen 197 RTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKK 260 (317)
T ss_pred ecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHH
Confidence 4456778889999999999999999999999999999999999999999999999999986655
No 19
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.45 E-value=3.6e-14 Score=115.73 Aligned_cols=57 Identities=47% Similarity=0.835 Sum_probs=54.7
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
||.|+.||.+|+..||..|..++||+..++++||.++||++.||+.||+|||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 467789999999999999999999999999999999999999999999999999985
No 20
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.36 E-value=5.9e-13 Score=140.36 Aligned_cols=64 Identities=28% Similarity=0.571 Sum_probs=59.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
.|+||.|+.||.+|+++||..|++++||+...|+|+|-.++|+|.+|++||+|||+||||..+.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN 173 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERN 173 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhh
Confidence 3778899999999999999999999999999999999999999999999999999999975443
No 21
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.32 E-value=1.6e-12 Score=107.53 Aligned_cols=53 Identities=19% Similarity=0.456 Sum_probs=50.7
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCC----CCHHHHHHHHHHhCCCcceEeecccchh
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPH----PDEKQRQQLSKQLGLAPRQVKFWFQNRR 161 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~y----P~~~~R~eLA~~LgLserQVkvWFQNRR 161 (764)
+||.||.||++|++.||.+|..++| |+...|++||.++||++++||+||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3778999999999999999999999 9999999999999999999999999965
No 22
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.31 E-value=2.1e-13 Score=132.14 Aligned_cols=66 Identities=32% Similarity=0.476 Sum_probs=62.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHE 172 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e 172 (764)
-++||.|+.|+..|+..||+.|+..+|.+..+|.|||..|+|+++|||.||||||.|.||++++..
T Consensus 98 ~~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 98 CRRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HHhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 346788999999999999999999999999999999999999999999999999999999888755
No 23
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.28 E-value=1.6e-12 Score=105.18 Aligned_cols=55 Identities=45% Similarity=0.813 Sum_probs=51.6
Q ss_pred CCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHH
Q 004271 111 KKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165 (764)
Q Consensus 111 r~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~K 165 (764)
+.|++|+.+|+..||..|..++||+..++.+||.++||+.+||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4567799999999999999999999999999999999999999999999998764
No 24
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.27 E-value=2.3e-12 Score=104.94 Aligned_cols=56 Identities=48% Similarity=0.877 Sum_probs=53.2
Q ss_pred CCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 111 KKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 111 r~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
+.+..|+.+|+..||..|..++||+..++.+||.++||+++||+.||+|||.+.++
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999885
No 25
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.27 E-value=8e-11 Score=115.73 Aligned_cols=190 Identities=18% Similarity=0.288 Sum_probs=140.0
Q ss_pred HHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhcChhhHhhh
Q 004271 283 QGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDVNQWKAM 362 (764)
Q Consensus 283 ~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~~W~~~ 362 (764)
+|..+++.+.+.+ ..|-...+.+ +..-|.+.++ +-....-|..++|..++.++.++|+|.+....-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~----~v~vy~~~~~---------~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD----GVKIYTKPYE---------DSGLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC----cEEEEEecCC---------CCCceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 6897765432 1112333221 223468899999999999999999994333222
Q ss_pred cccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCCcEEEEEEeccCccccccCccccc
Q 004271 363 FPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENIDASLAKC 442 (764)
Q Consensus 363 Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~ 442 (764)
.+ .+.++++++.++.+ ..++|..+..|.| ++.|||.++|++.+.++|.++|+..|+|.-..-....++|+
T Consensus 68 ~~-~~~~~~vl~~~~~~--------~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~ 137 (193)
T cd00177 68 DK-NFEEFEVIEEIDEH--------TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRA 137 (193)
T ss_pred hh-cceEEEEEEEeCCC--------eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEE
Confidence 22 23455777766542 6889999999999 99999999999999999999999999986311112368999
Q ss_pred cccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHH
Q 004271 443 RKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQ 500 (764)
Q Consensus 443 ~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ 500 (764)
+.+++|++|+++++|.|+||++-|++..-+. | ..++++.+.-.+..++..++.+
T Consensus 138 ~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i-P---~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 138 EIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI-P---KSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEEccEEEEEECCCCCEEEEEEEeeCCCCCc-c---HHHHHhhhhhccHHHHHHHHHh
Confidence 9999999999999999999999999888653 3 4566667777777777777643
No 26
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.20 E-value=8.9e-12 Score=122.44 Aligned_cols=63 Identities=33% Similarity=0.556 Sum_probs=57.5
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhh
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERH 171 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~ 171 (764)
.+++|+|.|.+|+.+|++.|..++||+...|.+|+..|+++++-||+||||||++.|+.....
T Consensus 51 ~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~ 113 (156)
T COG5576 51 PKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGK 113 (156)
T ss_pred CcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccc
Confidence 355667889999999999999999999999999999999999999999999999999866553
No 27
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.16 E-value=2.5e-11 Score=126.46 Aligned_cols=73 Identities=29% Similarity=0.501 Sum_probs=66.8
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHH
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEK 182 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~ 182 (764)
||.||++|+.|++.|...|+..++|-..-|++|+.++||..|.|||||||||+|.||-++.....+.-+-+..
T Consensus 168 KRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrs 240 (383)
T KOG4577|consen 168 KRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRS 240 (383)
T ss_pred CCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999998888777777665543
No 28
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.14 E-value=1e-11 Score=125.10 Aligned_cols=63 Identities=30% Similarity=0.513 Sum_probs=58.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
.+++..|.+|+-+|+..||+.|...+|+-...|.+||..+|+++.||+|||||||+||||+..
T Consensus 165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 345667889999999999999999999999999999999999999999999999999997643
No 29
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.12 E-value=3.2e-09 Score=109.51 Aligned_cols=201 Identities=15% Similarity=0.216 Sum_probs=149.5
Q ss_pred HHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEE-EeChhhHHHHhcCh---h
Q 004271 282 NQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVV-FVDLPKLVQSFTDV---N 357 (764)
Q Consensus 282 ~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~---~ 357 (764)
.+.+++|+.++..+ .-|-...+.. -.+.|.+.. .+...-.-|..+++ ...+..+.+.|+|. .
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~--------gi~iy~r~~-----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~ 74 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKN--------NVKVWTKNP-----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRK 74 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCC--------CeEEEEeeC-----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhh
Confidence 47899999999654 4797654321 123342222 23334456777765 57888999999995 6
Q ss_pred hHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCCcEEEEEEeccCccccccC
Q 004271 358 QWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENIDA 437 (764)
Q Consensus 358 ~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~ 437 (764)
+|-..|-. +.+|+.+..+ ..++|..+..|-| |..|||.++|..+..+ |..+|+..|++.-.--+..
T Consensus 75 ~Wd~~~~e----~~~ie~~d~~--------~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~ 140 (222)
T cd08871 75 TWDSNMIE----SFDICQLNPN--------NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRK 140 (222)
T ss_pred hhhhhhce----eEEEEEcCCC--------CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCC
Confidence 66665443 3777766432 4778888888988 8999999999998877 8889999998743211134
Q ss_pred ccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 004271 438 SLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERLVFFMATNVPT 514 (764)
Q Consensus 438 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cerla~~~~~~i~~ 514 (764)
.++|.....+|++|++++++.|+|||+-|++..-+ +|. -+++....-.+-.++..|+++|+.+.-.++.+-|.
T Consensus 141 g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 141 GFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999999999999987765 443 35566677778899999999999998888876554
No 30
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.09 E-value=6.2e-11 Score=129.31 Aligned_cols=62 Identities=29% Similarity=0.505 Sum_probs=58.8
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
..||||+||.++......||++|.+|++|+..+..+||.+|+|+...|+|||+|||.|.||.
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~ 352 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRI 352 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccC
Confidence 34788899999999999999999999999999999999999999999999999999999963
No 31
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.06 E-value=3.3e-09 Score=108.31 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHH-hcC
Q 004271 277 IMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQS-FTD 355 (764)
Q Consensus 277 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~-lmD 355 (764)
...+++.|++|++.+.. ++-|-...+. ++..+.|.+.. +| ..-.-|..++|...+..+++. |.|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~-------~~~i~i~~r~~-----~~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNT-------TWGDVVYSRNV-----PG-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEec-------CCCCEEEEEEc-----CC-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 56789999999999954 5589765431 11223333322 12 224688899999999999764 445
Q ss_pred ---hhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcc-cCcccCceeEEEEeeeecCCCcEEEEEEeccCc
Q 004271 356 ---VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQML-TPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKV 431 (764)
Q Consensus 356 ---~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~-SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~ 431 (764)
+.+|-..|-.. ++++.+... ..++|.-+.-+ .++|..|||.++|+.++.+ +.++|+..|++.-
T Consensus 71 ~~~~~~Wd~~~~~~----~~i~~~d~~--------~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 71 VESLPSWNPTVLEC----KIIQVIDDN--------TDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred ccccceecCcccce----EEEEEecCC--------cEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 36676665443 777766432 34555333322 3689999999999999866 6799999998732
Q ss_pred cccccCccccccccCCceeeeeCCC--CeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 004271 432 EENIDASLAKCRKRPSGCIVEDKSN--GHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERL 504 (764)
Q Consensus 432 ~~~~~~~~~~~~~~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cerl 504 (764)
.-.+...++|+...++|++|+++++ +.|+|||+-|++..-+ +|. -++++.+.-+.-.|++.|+++|+.|
T Consensus 138 ~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 138 AMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 2112356899999999999999987 6899999999987744 443 2378888889999999999999753
No 32
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.03 E-value=6.9e-09 Score=105.86 Aligned_cols=194 Identities=12% Similarity=0.131 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhcC--
Q 004271 278 MELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTD-- 355 (764)
Q Consensus 278 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD-- 355 (764)
-.|+..|.+|++++.. .+.-|....+. ++.+.|.+.. ..+..-.-|..+.+..++.++++.|+|
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~W~~~~~~--------~~i~v~~~~~-----~~~~~~~~k~~~~i~~~~~~v~~~l~d~~ 69 (206)
T cd08867 4 KVIAEKLANEALQYIN-DTDGWKVLKTV--------KNITVSWKPS-----TEFTGHLYRAEGIVDALPEKVIDVIIPPC 69 (206)
T ss_pred HHHHHHHHHHHHHHhc-CcCCcEEEEcC--------CCcEEEEecC-----CCCCCEEEEEEEEEcCCHHHHHHHHHhcC
Confidence 4688899999999987 44789765432 1122222211 122223358889999999999999998
Q ss_pred ---hhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhc-ccCcccCceeEEEEeeeecCCCcEEEEEEeccCc
Q 004271 356 ---VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQM-LTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKV 431 (764)
Q Consensus 356 ---~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v-~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~ 431 (764)
+.+|...| ..+++++-|... ..++|..+-- +.++|..|||.++||.++.++|.++|+-.|++.-
T Consensus 70 ~~~r~~Wd~~~----~~~~~le~id~~--------~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp 137 (206)
T cd08867 70 GGLRLKWDKSL----KHYEVLEKISED--------LCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIP 137 (206)
T ss_pred ccccccccccc----cceEEEEEeCCC--------eEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCC
Confidence 46787553 455888877532 2445552221 1357999999999999999999999999999643
Q ss_pred cccccCccccccccCCceeeeeCC--CCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHH
Q 004271 432 EENIDASLAKCRKRPSGCIVEDKS--NGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQC 501 (764)
Q Consensus 432 ~~~~~~~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~c 501 (764)
.--+...++|+...++|++|++.+ ++.|+|||+-|++.-- .+| +-++++.++=+.--|+..|++|.
T Consensus 138 ~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 138 ERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 222234689999999999999886 5789999999998763 333 56778888888888999998874
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=99.00 E-value=1.8e-10 Score=118.15 Aligned_cols=64 Identities=30% Similarity=0.348 Sum_probs=60.1
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
..++|+.|+.|+..|+++||+.|+..+||+...|++||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 5567889999999999999999999999999999999999999999999999999999997554
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.87 E-value=4.4e-08 Score=100.62 Aligned_cols=171 Identities=10% Similarity=0.047 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhcChh
Q 004271 278 MELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDVN 357 (764)
Q Consensus 278 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~ 357 (764)
..|+++|++|++++-+ +.-.|-.-..+. +...+.+. .+.+.+---|..|+|..++.+|+|.+.|.+
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~~--------~~~v~~k~-----~~~~~gkl~k~egvi~~~~e~v~~~l~~~e 69 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTSK--------KITVSWKP-----SRKYHGNLYRVEGIIPESPAKLIQFMYQPE 69 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecCC--------ceEEEEEE-----cCCCCceEEEEEEEecCCHHHHHHHHhccc
Confidence 5688999999999977 557896654321 11111111 123444677999999999999999999977
Q ss_pred hHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhh-cccCcccCceeEEEEeeeecCCCcEEEEEEeccCcccccc
Q 004271 358 QWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQ-MLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENID 436 (764)
Q Consensus 358 ~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~-v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~ 436 (764)
...+--+ .+...+.|+-|... ..+.|.-++ .+-++|-+|||..+||.++.++|.++|...|++.-.--+.
T Consensus 70 ~r~~Wd~-~~~~~~iie~Id~~--------T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~ 140 (204)
T cd08904 70 HRIKWDK-SLQVYKMLQRIDSD--------TFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPS 140 (204)
T ss_pred hhhhhcc-cccceeeEEEeCCC--------cEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCC
Confidence 6654444 44566777776543 245554433 3457899999999999999999999999999974332234
Q ss_pred CccccccccCCceeeeeCCCC--eeEEEEEEeeeecc
Q 004271 437 ASLAKCRKRPSGCIVEDKSNG--HCKVTWVEHLECQK 471 (764)
Q Consensus 437 ~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~e~d~ 471 (764)
..++|++..|+||+|++.+++ +|++||+-++++.-
T Consensus 141 ~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG 177 (204)
T cd08904 141 SNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRG 177 (204)
T ss_pred CCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCC
Confidence 569999999999999999874 89999999977653
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.86 E-value=1.3e-09 Score=120.28 Aligned_cols=67 Identities=28% Similarity=0.541 Sum_probs=61.7
Q ss_pred CcccCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 103 SKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 103 ~~~~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
...+++.||.|++|++.|+..||+.|++++||+...|++||+++++++.+|++||+|||++++|+..
T Consensus 170 ~~~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 170 YALQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred ccccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 3446777888999999999999999999999999999999999999999999999999999997554
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.76 E-value=3.4e-07 Score=94.07 Aligned_cols=193 Identities=12% Similarity=0.178 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhcCh-
Q 004271 278 MELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDV- 356 (764)
Q Consensus 278 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~- 356 (764)
.+++++|+++++.+-+ .+..|-...+. ++.+.|.+.. ..+.+=.-|.-|+|..++.+|++.|+|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~--------~~i~v~~~~~-----~~~~~~~~k~e~~i~~s~~~~~~~l~d~~ 69 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT--------NEVAVSWRPS-----AEFAGNLYKGEGIVYATLEQVWDCLKPAA 69 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC--------CCEEEEeeec-----CCCCCcEEEEEEEecCCHHHHHHHHHhcc
Confidence 5789999999999974 67789765432 1223332211 0111112788899999999999999965
Q ss_pred ----hhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccC---cccCceeEEEEeeeecCCCcEEEEEEecc
Q 004271 357 ----NQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTP---MVPTREVYFVRYCKQLSAEQWAIVDVSID 429 (764)
Q Consensus 357 ----~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SP---Lvp~Re~~flRyckq~~~g~w~VvDvS~d 429 (764)
.+|-..|-.+ +.|+-|... ..+.|. ..|.| +|.+|||..+|+.++.++|.++|.-.|+.
T Consensus 70 ~~~r~~W~~~~~~~----~vle~id~~--------~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~ 135 (208)
T cd08903 70 GGLRVKWDQNVKDF----EVVEAISDD--------VSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVE 135 (208)
T ss_pred chhhhhhhhccccE----EEEEEecCC--------EEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEecc
Confidence 5888876665 888877632 223333 44555 79999999999999999999887777765
Q ss_pred CccccccCccccccccCCceeeeeCCC--CeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 004271 430 KVEENIDASLAKCRKRPSGCIVEDKSN--GHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502 (764)
Q Consensus 430 ~~~~~~~~~~~~~~~~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ce 502 (764)
.-.--+...++|++..|+|++|...++ +.|+|||+-|++.. ..+| +.++++.++=...-.+..|+++..
T Consensus 136 h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 136 HPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLP---QTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC-CCcC---HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 421112356899999999999999954 58999999888764 2355 456665555566667777776653
No 37
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.65 E-value=4.5e-07 Score=92.41 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhcCCCCceEEcCC-CCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhcCh-hhH
Q 004271 282 NQGMEELKKMATAGGPLWIRSLE-TGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDV-NQW 359 (764)
Q Consensus 282 ~~Am~El~~la~~~eplWi~~~~-~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~-~~W 359 (764)
+.+.++|++-+...+.-|....+ .|..+.. |. .+.++..-+=|..++|...+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~gi~I~~-----k~--------~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDHVELAF-----KK--------VDDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCcEEEEE-----Ee--------CCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 47788999999988999976543 2333331 11 123556677788999999999999877764 456
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeee-cCCCcEEEEEEeccCccccccCc
Q 004271 360 KAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQ-LSAEQWAIVDVSIDKVEENIDAS 438 (764)
Q Consensus 360 ~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq-~~~g~w~VvDvS~d~~~~~~~~~ 438 (764)
-..|-. +++++.++.. ..+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++.-..- +..
T Consensus 71 d~~~~~----~~vie~id~~--------~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-p~g 136 (197)
T cd08869 71 DDDLLQ----WKVVETLDED--------TEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-PLG 136 (197)
T ss_pred chhhhe----EEEEEEecCC--------cEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-CCC
Confidence 655444 4777777532 3567777777777 59999999999875 6788999999998631111 227
Q ss_pred cccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccc
Q 004271 439 LAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMY 478 (764)
Q Consensus 439 ~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 478 (764)
++|++.+++|++|++..+|.|+|||+-|++.-- .+|.-|
T Consensus 137 ~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~wl 175 (197)
T cd08869 137 GVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPEWY 175 (197)
T ss_pred CEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCcee
Confidence 899999999999999999999999999998642 355443
No 38
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.61 E-value=4.4e-07 Score=93.34 Aligned_cols=192 Identities=13% Similarity=0.184 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEc-CC-CCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhc
Q 004271 277 IMELVNQGMEELKKMATAGGPLWIRS-LE-TGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFT 354 (764)
Q Consensus 277 ~~~lA~~Am~El~~la~~~eplWi~~-~~-~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm 354 (764)
...++.+|++|++++.+ .+..|-.. .+ .|. +.|.+.. ++.. -+-|.-++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~gi---------~v~s~~~-----~~~~-k~~k~e~~i~~~~~~l~~~l~ 69 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENGD---------KVLSKVV-----PDIG-KVFRLEVVVDQPLDNLYSELV 69 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCCC---------EEEEEEc-----CCCC-cEEEEEEEecCCHHHHHHHHH
Confidence 46789999999999986 66689665 22 222 2222222 1111 566778899999999995555
Q ss_pred -Ch---hhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccC--cccCceeEEEEeeeecCCCcEEEEEEec
Q 004271 355 -DV---NQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTP--MVPTREVYFVRYCKQLSAEQWAIVDVSI 428 (764)
Q Consensus 355 -D~---~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SP--Lvp~Re~~flRyckq~~~g~w~VvDvS~ 428 (764)
|. .+|...|-.+ +.|+.++.. .-++|. ..++.| +|..|||..+|+.++.+++. +++..|.
T Consensus 70 ~d~e~~~~W~~~~~~~----~vl~~id~~--------~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~ 135 (209)
T cd08905 70 DRMEQMGEWNPNVKEV----KILQRIGKD--------TLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMAT 135 (209)
T ss_pred hchhhhceecccchHH----HHHhhcCCC--------ceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEee
Confidence 53 5666665443 555554432 245664 556766 79999999999999986654 5666776
Q ss_pred cCccccccCccccccccCCceeeeeCCC--CeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 004271 429 DKVEENIDASLAKCRKRPSGCIVEDKSN--GHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502 (764)
Q Consensus 429 d~~~~~~~~~~~~~~~~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ce 502 (764)
+.-.--+...++|.+..+.|++|+++++ |.|+|||+-|++..-+ +| ..|++..++=..-.++..|+++.+
T Consensus 136 ~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP---~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 136 HFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred cCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CC---HHHHHHHhHHhHHHHHHHHHHHHh
Confidence 5222112346899999999999999988 9999999999987655 44 356777777778889999988765
No 39
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.55 E-value=1.2e-06 Score=90.13 Aligned_cols=135 Identities=14% Similarity=0.206 Sum_probs=101.4
Q ss_pred CCCceeeeeceeEEEeChhhHH-HHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCcee
Q 004271 329 SNRSIEASRDAGVVFVDLPKLV-QSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREV 407 (764)
Q Consensus 329 ~g~~~EAsR~~g~V~~~~~~LV-e~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~ 407 (764)
.+...-+-|....|.-.+..++ .++.++..|-..|-. +.+++-|.- ...+.|--+.-|-|+ |.|||
T Consensus 47 d~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~----~~~ie~ld~--------~tdi~~y~~~~~~P~-~~RD~ 113 (205)
T cd08909 47 DGNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQ----WKVVETLDK--------QTEVYQYVLNCMAPH-PSRDF 113 (205)
T ss_pred CCCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcce----eEEEEEeCC--------CcEEEEEEeecCCCC-CCCEE
Confidence 3455567787777777777664 466677888877644 477776653 245566666666675 99999
Q ss_pred EEEEeeee-cCCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccc
Q 004271 408 YFVRYCKQ-LSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMY 478 (764)
Q Consensus 408 ~flRyckq-~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 478 (764)
+.+|+-++ +++|..+|+..|++....- ...++|+..+-+|++|+++++|.|+||++-|++..-+ +|.=|
T Consensus 114 v~~R~w~~~~~~G~~vi~~~Sv~H~~~p-~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~-~P~W~ 183 (205)
T cd08909 114 VVLRSWRTDLPKGACSLVSVSVEHEEAP-LLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH-SPEWY 183 (205)
T ss_pred EEEEEEEEeCCCCcEEEEEecCCCCcCC-CCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC-ChHHH
Confidence 99999765 5799999999999976542 3468999999999999999999999999999986433 44433
No 40
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.47 E-value=1.4e-06 Score=102.18 Aligned_cols=129 Identities=16% Similarity=0.312 Sum_probs=104.5
Q ss_pred eeeeceeEEEeChhhHHHHhcChh----hHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhh--cccCcccCcee
Q 004271 334 EASRDAGVVFVDLPKLVQSFTDVN----QWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQ--MLTPMVPTREV 407 (764)
Q Consensus 334 EAsR~~g~V~~~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~--v~SPLvp~Re~ 407 (764)
-+=|+.|+|...+.+|.|.+|+.+ +|=..| ..++.|+.| +|...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~----~~~~vIE~I--------D~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSF----QYGSLVEEV--------DGHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcc----cceEEEEEe--------cCCeEEEEEEeccccccCccCccee
Confidence 567889999999999999999777 665544 455888876 344677776554 44567777999
Q ss_pred EEEEeeeecCCCcEEEEEEeccCccccccCccccccccCCceeeeeCC--C--CeeEEEEEEeeeeccccc
Q 004271 408 YFVRYCKQLSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKS--N--GHCKVTWVEHLECQKGTV 474 (764)
Q Consensus 408 ~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 474 (764)
+++||-+..+||+++|+=+|+..-.-.+...++|.+..|.||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999999999998754433456799999999999999964 3 389999999999988874
No 41
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.44 E-value=4.9e-06 Score=85.10 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCC-CCCceeeeeceeEEEeChhhHHHHhcC-
Q 004271 278 MELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGK-SNRSIEASRDAGVVFVDLPKLVQSFTD- 355 (764)
Q Consensus 278 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~-~g~~~EAsR~~g~V~~~~~~LVe~lmD- 355 (764)
..+|.++-+++++--+.++-.|-.-...+..+. ..+| +-|.+---|.-|+|.-.+..|++.+-+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~~~v--------------~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~ 69 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKSKDVTV--------------WRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPG 69 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeCCCEEE--------------EEecCCcCCCceEEEEEEecCCHHHHHHHHhcc
Confidence 567878888899977779999976443221222 1232 245555678888999999999999999
Q ss_pred --hhhHhhhcccccccceEeEEeeCCCCCCCCCceeee-hhhhhcccCcccCceeEEEEeeeecCCCcEEEEEEeccCcc
Q 004271 356 --VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLM-FAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVE 432 (764)
Q Consensus 356 --~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm-~ael~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~ 432 (764)
+.+|=+.+ ..++.|+-|..+. .++ |.=.-.+-++|-+|||.-|||+++.++|. ..|=||++.-.
T Consensus 70 ~~r~~Wd~~v----~~~~Iie~Id~dt--------~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~ 136 (202)
T cd08902 70 PYRLDWDSLM----TSMDIIEEFEENC--------CVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE 136 (202)
T ss_pred cchhcccchh----hheeHhhhhcCCc--------EEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC
Confidence 45887654 4458877766542 333 55556677899999999999999999998 77788887443
Q ss_pred ccccCccccccccCCceeeeeCCCC--eeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHH
Q 004271 433 ENIDASLAKCRKRPSGCIVEDKSNG--HCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQ 500 (764)
Q Consensus 433 ~~~~~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ 500 (764)
+.+.++|.+..|.||++.+++|| .|+.||+-++++.-+ |=+.++++.++=..=-....|+++
T Consensus 137 --~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 137 --ARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred --CCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 34489999999999999999988 678889999776644 345666666655555555666554
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.43 E-value=9.5e-06 Score=83.64 Aligned_cols=195 Identities=9% Similarity=0.157 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEcC-C-CCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHH-HHh
Q 004271 277 IMELVNQGMEELKKMATAGGPLWIRSL-E-TGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLV-QSF 353 (764)
Q Consensus 277 ~~~lA~~Am~El~~la~~~eplWi~~~-~-~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~l 353 (764)
....+.+||+++.++... +..|.-.. . .|.-| |.+.. ...| -+=|.-++|...+..|. +.|
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~gi~V---------~s~~~---~~~~---~~fk~~~~v~~~~~~l~~~ll 69 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNGDTV---------YTLEV---PFHG---KTFILKAFMQCPAELVYQEVI 69 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCCCEE---------EEecc---CCCC---cEEEEEEEEcCCHHHHHHHHH
Confidence 466789999999999764 45797432 2 23222 22111 0011 22266778888888995 688
Q ss_pred cChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccC--cccCceeEEEEeeeecCCCcEEEEEEeccCc
Q 004271 354 TDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTP--MVPTREVYFVRYCKQLSAEQWAIVDVSIDKV 431 (764)
Q Consensus 354 mD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SP--Lvp~Re~~flRyckq~~~g~w~VvDvS~d~~ 431 (764)
.|.+...+=.+.+ ..++.|+-+... --+.| +.-.|.+ .|..|||-.+|+.++.+++ ++++..|++.-
T Consensus 70 ~D~~~~~~W~~~~-~~~~vi~~~~~~--------~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~ 138 (209)
T cd08906 70 LQPEKMVLWNKTV-SACQVLQRVDDN--------TLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHS 138 (209)
T ss_pred hChhhccccCccc-hhhhheeeccCC--------cEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecC
Confidence 8887665555554 344655555432 23456 5556554 6899999999999998888 57777887532
Q ss_pred cccccCccccccccCCceeeeeC--CCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 004271 432 EENIDASLAKCRKRPSGCIVEDK--SNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502 (764)
Q Consensus 432 ~~~~~~~~~~~~~~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ce 502 (764)
.--+...++|.+..++|++|++. .+|.|+|||+-|++.-- .+| +.|++..++=..-..+..|+++.+
T Consensus 139 ~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP---~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 139 HKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLP---RYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21123468999999999999985 67799999999998664 333 356777777667777778877654
No 43
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.26 E-value=6e-07 Score=94.41 Aligned_cols=62 Identities=27% Similarity=0.533 Sum_probs=56.6
Q ss_pred CCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 108 KKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 108 kkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
.|||+||.+..-.-+.||..|..+|.|+.+....+|.+|.|....|+|||+|.|.|.||...
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~~ 369 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKR 369 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhhh
Confidence 35667889999999999999999999999999999999999999999999999999998443
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.25 E-value=6.3e-07 Score=93.93 Aligned_cols=51 Identities=24% Similarity=0.528 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 116 HTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 116 fT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
|...-...|...|..++||+..++.+||+.+||+..||-.||+|||.|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 556668899999999999999999999999999999999999999999983
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.19 E-value=2.3e-05 Score=80.76 Aligned_cols=169 Identities=12% Similarity=0.202 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhcCCCCceEEcCC-CCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhcC-hhh
Q 004271 281 VNQGMEELKKMATAGGPLWIRSLE-TGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTD-VNQ 358 (764)
Q Consensus 281 A~~Am~El~~la~~~eplWi~~~~-~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD-~~~ 358 (764)
-+..+++|++.|..--=-|+.... .+.|+. | ..+..|...-.-|....+...+..++..|+| +.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~~el~--------~-----~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQAELS--------Y-----KKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCcEEEE--------E-----eccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 347788888888755556765322 112211 1 1123455556777778888888888855554 567
Q ss_pred HhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeee-ecCCCcEEEEEEeccCccccccC
Q 004271 359 WKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCK-QLSAEQWAIVDVSIDKVEENIDA 437 (764)
Q Consensus 359 W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyck-q~~~g~w~VvDvS~d~~~~~~~~ 437 (764)
|-..+-. +.+|+-++... .+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. .| .
T Consensus 78 Wd~~~~e----~~vIe~ld~~~--------~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P-~ 142 (204)
T cd08908 78 WDVDLLD----SKVIEILDSQT--------EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR-AP-V 142 (204)
T ss_pred HHHHhhh----eEeeEecCCCc--------eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC-c
Confidence 8877655 48888776432 467888888988 7999999997765 588999999999987432 22 3
Q ss_pred ccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccc
Q 004271 438 SLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMY 478 (764)
Q Consensus 438 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 478 (764)
..+|.+.+-+|++|+++++|.|+||.+-|++--- .+|.=|
T Consensus 143 ~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG-~iP~W~ 182 (204)
T cd08908 143 AGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRG-HMPEWY 182 (204)
T ss_pred CceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCC-CCcHHH
Confidence 3689999999999999999999999999987532 344433
No 46
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.09 E-value=5.7e-05 Score=77.75 Aligned_cols=155 Identities=14% Similarity=0.264 Sum_probs=113.4
Q ss_pred CCceeeeeceeEEE-eChhhHHHHhcChh---hHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCc
Q 004271 330 NRSIEASRDAGVVF-VDLPKLVQSFTDVN---QWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTR 405 (764)
Q Consensus 330 g~~~EAsR~~g~V~-~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~R 405 (764)
+...-.=|..+.+. ..+..|.+.|+|.+ +|...+-. .++.++. + ..++|..+..|-| |..|
T Consensus 45 ~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~------~~~~~~~-------~-~~i~y~~~k~PwP-vs~R 109 (207)
T cd08910 45 QSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE------LYEKECD-------G-ETVIYWEVKYPFP-LSNR 109 (207)
T ss_pred CCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh------heeecCC-------C-CEEEEEEEEcCCC-CCCc
Confidence 33334678888888 79999999999964 56665432 2333322 2 3678889999999 9999
Q ss_pred eeEEEEeeee-cCCC--cEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhh
Q 004271 406 EVYFVRYCKQ-LSAE--QWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIV 482 (764)
Q Consensus 406 e~~flRyckq-~~~g--~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 482 (764)
||.++|-... ..+| .|+|+..|++.-.--....++|....-+|++|++..++.|+|+++-|.+-. ..+|. -++
T Consensus 110 D~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlv 185 (207)
T cd08910 110 DYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLI 185 (207)
T ss_pred eEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHH
Confidence 9999964443 3344 689888887632111134689999999999999998889999999998842 23443 367
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 004271 483 SSGLAFGARHWMTTLQLQCER 503 (764)
Q Consensus 483 ~sg~afgA~rwlatLqR~cer 503 (764)
+.-...+...|+..|+..|..
T Consensus 186 N~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 186 NWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHhc
Confidence 778888999999999988864
No 47
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.07 E-value=6.7e-05 Score=77.21 Aligned_cols=200 Identities=17% Similarity=0.157 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhcCh
Q 004271 277 IMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFTDV 356 (764)
Q Consensus 277 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~ 356 (764)
+++=+...|+|+++..+. +.-|....+. ++.+.|-+.. ++-..-+-|.-|++..+...+.++|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~--------~~i~v~~r~~-----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKES--------EGIRVYYKFE-----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccC--------CCeEEEEEeC-----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 345566788999988776 5679876532 2333442222 2333577889999999999999999999
Q ss_pred hhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEE-Eeeeec-CCCcEEEEEEeccCccc-
Q 004271 357 NQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFV-RYCKQL-SAEQWAIVDVSIDKVEE- 433 (764)
Q Consensus 357 ~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~fl-Ryckq~-~~g~w~VvDvS~d~~~~- 433 (764)
+...+-+|.. ..+..++.++-. -++.|..+.+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~~--------~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGRA--------DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCCc--------eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 8888888874 455666555432 2567777777777 888999975 556777 99999999999984321
Q ss_pred -------cc-cC-ccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 004271 434 -------NI-DA-SLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCER 503 (764)
Q Consensus 434 -------~~-~~-~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cer 503 (764)
-| .. .++|.....+|++|+++++|.|+|+++-|++-.-+-||. -|++...--.+...+..|++.|+.
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~---~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK---SLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12 33 689999999999999999999999999996633222654 344555556667778888877763
No 48
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.90 E-value=0.00047 Score=70.83 Aligned_cols=193 Identities=10% Similarity=0.125 Sum_probs=134.7
Q ss_pred HHHHHHhhcCCC--CceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEE-EeChhhHHHHhcChh---h
Q 004271 285 MEELKKMATAGG--PLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVV-FVDLPKLVQSFTDVN---Q 358 (764)
Q Consensus 285 m~El~~la~~~e--plWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~~---~ 358 (764)
++||+.+.+... .-|-...+....-.. .+.|.+. +.|...-.=|..+++ .+.+..|.+.|+|.+ +
T Consensus 8 ~~~~~~~~~~~~~~~~W~~~~~k~~~~~~----i~vy~r~-----~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~ 78 (209)
T cd08870 8 LRDLVQELQEGAEGQAWQQVMDKSTPDMS----YQAWRRK-----PKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKK 78 (209)
T ss_pred HHHHHHHhcCcCCCCcceEhhhccCCCce----EEEEecc-----cCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhh
Confidence 456666655543 468776542100000 1223222 233334567888888 569999999999965 5
Q ss_pred HhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCCcEEEEEEeccCccccccCc
Q 004271 359 WKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEENIDAS 438 (764)
Q Consensus 359 W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~ 438 (764)
|-..|-. +++|+..+. .| ..++|-.+..|-|+ -.||+.+.|-..+..+|..+|+=.|++.-. .|...
T Consensus 79 Wd~~~~~----~~~le~~~~------~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~-~P~~~ 145 (209)
T cd08870 79 WDETVIE----HETLEEDEK------SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPS-VPRSG 145 (209)
T ss_pred hhhheee----EEEEEecCC------CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCC-CCCCC
Confidence 6555443 366554221 02 47899999999988 999999999877777999999888887421 11116
Q ss_pred cccccccCCceeeeeC--CCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 004271 439 LAKCRKRPSGCIVEDK--SNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCER 503 (764)
Q Consensus 439 ~~~~~~~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cer 503 (764)
++|.+..=||++|++. .+|.++|+++-|.+- ...+|. -|++.....|...||..|++.|..
T Consensus 146 ~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 146 RKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred cEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8999999999999999 789999999999863 223554 577888999999999999999864
No 49
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.86 E-value=0.00027 Score=71.04 Aligned_cols=153 Identities=10% Similarity=0.108 Sum_probs=106.4
Q ss_pred eeeeceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEee
Q 004271 334 EASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYC 413 (764)
Q Consensus 334 EAsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyc 413 (764)
-.-|.+++|..++.++.+++.|.+.|.+-=|.+ ..++ ||.... ++ -.++|..+..|=| |..|||.+.|..
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~-~~~~---vie~~~----~~-~~i~~~~~~~p~p-vs~Rdfv~~~~~ 110 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNC-KESR---VLKRTD----DN-ERSVYTVIDLPWP-VKDRDMVLRSTT 110 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc-ceEE---EeecCC----CC-cEEEEEEEecccc-cCCceEEEEEEE
Confidence 355888899999999999999999888777765 4444 444332 11 2445555555544 789999987654
Q ss_pred eec-CCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHH
Q 004271 414 KQL-SAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARH 492 (764)
Q Consensus 414 kq~-~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~r 492 (764)
... ++|..+|.=.|.+...+. ...++|.+.+.+|+.|++.++|.|+||++-|++..-+...-+.+.+ +.=+...
T Consensus 111 ~~~~~~~~~~i~~~s~~~~~P~-~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~----~~~~~~~ 185 (195)
T cd08876 111 EQDADDGSVTITLEAAPEALPE-QKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAF----AKDAPYN 185 (195)
T ss_pred EEcCCCCEEEEEeecCCccCCC-CCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHH----HHHHHHH
Confidence 443 367777766666542111 2357899999999999999999999999999888644333344333 3445668
Q ss_pred HHHHHHHHH
Q 004271 493 WMTTLQLQC 501 (764)
Q Consensus 493 wlatLqR~c 501 (764)
++++|+++|
T Consensus 186 ~l~~l~~~~ 194 (195)
T cd08876 186 TLENLRKQL 194 (195)
T ss_pred HHHHHHHhh
Confidence 888888765
No 50
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.83 E-value=0.00012 Score=75.49 Aligned_cols=134 Identities=13% Similarity=0.069 Sum_probs=91.2
Q ss_pred CCCCCceeeeeceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCc-ccCc
Q 004271 327 GKSNRSIEASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPM-VPTR 405 (764)
Q Consensus 327 ~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPL-vp~R 405 (764)
+..+|.+ -++|...+.+|++.|.|.....+=.+.+ ..++.++-++. ...++|.....|=|+ ++.|
T Consensus 43 ~~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~~-~~~~vl~~~~~--------d~~i~y~~~~~Pwp~~~~~R 108 (205)
T cd08874 43 TYHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTMI-KTARIHKTFTE--------DICLVYLVHETPLCLLKQPR 108 (205)
T ss_pred CcceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHhh-hheeeeeecCC--------CeEEEEEEecCCCCCCCCCC
Confidence 3456664 4478889999999998875444333322 22355554432 235677666655555 3999
Q ss_pred eeEEEEeeeecCCCcEEEEEEeccC-ccccccCccccccccCCceeeeeC---CCCeeEEEEEEeeeecccccc
Q 004271 406 EVYFVRYCKQLSAEQWAIVDVSIDK-VEENIDASLAKCRKRPSGCIVEDK---SNGHCKVTWVEHLECQKGTVH 475 (764)
Q Consensus 406 e~~flRyckq~~~g~w~VvDvS~d~-~~~~~~~~~~~~~~~PSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 475 (764)
||..+|-....+++.. |.=.|++. ..+-....++|.+.+++|++|+++ ++|.|+||.+-|+|---..+|
T Consensus 109 DfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 109 DFCCLQVEAKEGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred eEEEEEEEEECCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 9999996555555544 66677764 322111258999999999999999 999999999999987533444
No 51
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.79 E-value=0.00011 Score=75.46 Aligned_cols=165 Identities=11% Similarity=0.143 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhhcCCCCceEEcCCC-CccccChHHHHhhccCcCCCCCCCCCceeeeeceeE-EEeChhhHHHHhcChhh
Q 004271 281 VNQGMEELKKMATAGGPLWIRSLET-GREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGV-VFVDLPKLVQSFTDVNQ 358 (764)
Q Consensus 281 A~~Am~El~~la~~~eplWi~~~~~-~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~-V~~~~~~LVe~lmD~~~ 358 (764)
-+..+++|++-+....=-|+..... +.++- |-.. +.|...--=|.+.- -...+.-|-++|.|+..
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev~--------~kk~-----~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~ 77 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTELA--------CKKV-----GDGHPLRLWKVSTEVEAPPSVVLQRVLRERHL 77 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEEE--------EEeC-----CCCCceEEEEEEEEecCCCHHHHHHHhhchhh
Confidence 3478889999998777889875432 22322 1000 01111111122222 23355677899999999
Q ss_pred HhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeee-ecCCCcEEEEEEeccCccccccC
Q 004271 359 WKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCK-QLSAEQWAIVDVSIDKVEENIDA 437 (764)
Q Consensus 359 W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyck-q~~~g~w~VvDvS~d~~~~~~~~ 437 (764)
|=+.+=. ..+|+.|.-.. ...|. -+..| +.+|.|||.+||.-+ .+..|.-+|+.+|++....-+..
T Consensus 78 WD~~m~e----~~~Ie~Ld~n~-----dI~yY---~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~ 144 (205)
T cd08907 78 WDEDLLH----SQVIEALENNT-----EVYHY---VTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEA 144 (205)
T ss_pred hhHHHHh----hhhheeecCCC-----EEEEE---EecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCC
Confidence 9987544 48888885332 22222 22223 568999999999864 46778999999999865433332
Q ss_pred ccccccccCCceeeeeCCCCeeEEEEEEeeeeccc
Q 004271 438 SLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKG 472 (764)
Q Consensus 438 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~ 472 (764)
-+|+--+=|||||++++.|.|+||-+-|++..-+
T Consensus 145 -gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 145 -GVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred -CeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 3899999999999999999999999999987543
No 52
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.75 E-value=1.6e-05 Score=82.99 Aligned_cols=58 Identities=28% Similarity=0.516 Sum_probs=52.9
Q ss_pred CCCcccCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 110 RKKYHRHTAEQIREMEALF---KESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F---~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
||+|..|+.+-.++|...| ..+|||+...+++||+++|++-.||-.||.|+|-+.||.
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 5566789999999999998 678999999999999999999999999999999999863
No 53
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.68 E-value=9e-06 Score=62.75 Aligned_cols=35 Identities=34% Similarity=0.737 Sum_probs=29.5
Q ss_pred hcCCCCCHHHHHHHHHHhCCCcceEeecccchhhH
Q 004271 129 KESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQ 163 (764)
Q Consensus 129 ~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak 163 (764)
..+|||+..++++||+++||+.+||..||-|.|.+
T Consensus 6 ~~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 6 LHNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TTSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 45799999999999999999999999999999864
No 54
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.57 E-value=5.9e-05 Score=77.50 Aligned_cols=66 Identities=33% Similarity=0.707 Sum_probs=60.2
Q ss_pred cccCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 104 KNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 104 ~~~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
....+.++.|+.++..|+..++..|..+++|+...+++|+..+|++++.+++||||+|++.++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 148 PSNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CCccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 334567888899999999999999999999999999999999999999999999999999997544
No 55
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.56 E-value=0.0016 Score=68.59 Aligned_cols=196 Identities=15% Similarity=0.222 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhcC--CCCceEEcCC-CCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEE-eChhhHHHHhcCh
Q 004271 281 VNQGMEELKKMATA--GGPLWIRSLE-TGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVF-VDLPKLVQSFTDV 356 (764)
Q Consensus 281 A~~Am~El~~la~~--~eplWi~~~~-~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~lmD~ 356 (764)
-.+-.+|.+++|+. ++.-|--..+ +| .+.|.+.. ...|+....=|+.++|. ..+..+.+.|.|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~---~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~ 75 (235)
T cd08872 8 VDEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREV---EEDGVVLDPLKATHAVKGVTGHEVCHYFFDP 75 (235)
T ss_pred HHHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEEC---CCCCceeeeEEEEEEECCCCHHHHHHHHhCh
Confidence 34567789999865 5557965433 22 23343322 11244445678888888 8899999999998
Q ss_pred hhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCC-------CcEEEEEEecc
Q 004271 357 NQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSA-------EQWAIVDVSID 429 (764)
Q Consensus 357 ~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~-------g~w~VvDvS~d 429 (764)
+.-.+=-..+ ..++.|+-++.. ..+.|..+-.|=| +..|||.|+|+-++.++ +.|+|+..|++
T Consensus 76 ~~r~~Wd~~~-~~~~vie~l~~~--------~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~ 145 (235)
T cd08872 76 DVRMDWETTL-ENFHVVETLSQD--------TLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVD 145 (235)
T ss_pred hhHHHHHhhh-heeEEEEecCCC--------CEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEeccc
Confidence 6544443333 233555554432 2566777778888 69999999999999876 78999999986
Q ss_pred CccccccCccccccc---cCCceeeee------C--CCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHH
Q 004271 430 KVEENIDASLAKCRK---RPSGCIVED------K--SNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQ 498 (764)
Q Consensus 430 ~~~~~~~~~~~~~~~---~PSGclIq~------~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLq 498 (764)
.-.--+...++|.+. +=.|.+|.+ + .||.|+||++-|++---+ +|. .+++.....++-.+|..|-
T Consensus 146 h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~-iP~---wvvn~~~k~~~P~~l~~~~ 221 (235)
T cd08872 146 HDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGW-APA---SVLRAVYKREYPKFLKRFT 221 (235)
T ss_pred CccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCC-ccH---HHHHHHHHhhchHHHHHHH
Confidence 332111235677664 222333332 1 588999999999975433 332 3445555667777777776
Q ss_pred HHHH
Q 004271 499 LQCE 502 (764)
Q Consensus 499 R~ce 502 (764)
-++.
T Consensus 222 ~~~~ 225 (235)
T cd08872 222 SYVQ 225 (235)
T ss_pred HHHH
Confidence 5543
No 56
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.43 E-value=0.0032 Score=64.86 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=111.4
Q ss_pred eeeeceeEE-EeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEe
Q 004271 334 EASRDAGVV-FVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRY 412 (764)
Q Consensus 334 EAsR~~g~V-~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRy 412 (764)
-.=|..+++ ...+..+++.|+|.+.-.+=.+.++ .+++|+.+.. . ...++|..+..|-|+ -.||+.+.|-
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~-~~~~le~~~~------~-~~~i~y~~~~~P~P~-s~RD~V~~r~ 115 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAV-ELEVVDEDPE------T-GSEIIYWEMQWPKPF-ANRDYVYVRR 115 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhhe-eEEEEEccCC------C-CCEEEEEEEECCCCC-CCccEEEEEE
Confidence 356776655 7899999999999864433333331 2354444222 1 237789999999996 8999999988
Q ss_pred eeecC-CCcEEEEEEeccCccccccCccccccccCCceeeeeCC---CCeeEEEEEEeeeecccc-ccccchhhhcchhh
Q 004271 413 CKQLS-AEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKS---NGHCKVTWVEHLECQKGT-VHTMYRSIVSSGLA 487 (764)
Q Consensus 413 ckq~~-~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~---nG~skVtwVeH~e~d~~~-v~~l~rpl~~sg~a 487 (764)
..+.+ +|.++|+-.|++.-.--....++|.....+|++|++.. ++.|+|+++-|. |+.. +|. -|++.-..
T Consensus 116 ~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~---~lvN~~~~ 190 (207)
T cd08911 116 YIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS---YITSWVAM 190 (207)
T ss_pred EEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH---HHHHHHHH
Confidence 76664 56778888888742111134689999999999999983 677999988885 6653 664 35666678
Q ss_pred HHHHHHHHHHHHHHHH
Q 004271 488 FGARHWMTTLQLQCER 503 (764)
Q Consensus 488 fgA~rwlatLqR~cer 503 (764)
.+.-.||..|++-|..
T Consensus 191 ~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 191 SGMPDFLERLRNAALK 206 (207)
T ss_pred hhccHHHHHHHHHHhc
Confidence 8888999999988864
No 57
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.29 E-value=0.00018 Score=82.25 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=53.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQI 164 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~ 164 (764)
.+.||.|..||+.|...|..+|++++||+....+.|+.+|||...-|..||-|-|.|.
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 3456678999999999999999999999999999999999999999999999998875
No 58
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.22 E-value=0.026 Score=58.41 Aligned_cols=171 Identities=19% Similarity=0.250 Sum_probs=102.1
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhcccccchhhhhcCCCccceeeecc
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLP-VSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLA 626 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 626 (764)
..++|.... ..++|+|.+|+.. + +.+...++...++ +||+.+|++|.|.+.|.+||..... .+.+.++
T Consensus 21 ~~~~W~~~~--~~~gi~iy~r~~~---~---~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~- 89 (222)
T cd08871 21 STDGWKLKY--NKNNVKVWTKNPE---N---SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL- 89 (222)
T ss_pred CCCCcEEEE--cCCCeEEEEeeCC---C---CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc-
Confidence 345899663 3478999998863 2 2344455666666 9999999999999999999964322 2344444
Q ss_pred cCCCCCCeEEEEeeec----cCCCeEEEEeeecCCcceEEEE-cccccccccccccCCCCCCc--cccCCccEEccCCCC
Q 004271 627 KGQDRGNAVNIQTMKS----KENSMWLLQDSYTNAYESMVVY-APVDITGMQSVITGCDSSNI--AILPSGFSILPDGLE 699 (764)
Q Consensus 627 ~g~~~gn~vsllr~~~----~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~Ds~~v--~lLPSGF~I~Pdg~~ 699 (764)
+.++.|.-...+. .+++.++++..+.+. ++++|+ ..++-+.+ ...+.+| ..+.+||.|-|.+.
T Consensus 90 ---d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~~- 159 (222)
T cd08871 90 ---NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTGP- 159 (222)
T ss_pred ---CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECCC-
Confidence 3455565554442 238888888766555 776654 34443321 0112222 35678888887551
Q ss_pred CCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHH-h-HhhhhHHHHHHHHHhhc
Q 004271 700 SRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVD-S-VNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 700 ~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~-t-v~~li~~tv~~Ik~Al~ 760 (764)
++|.+|.-+|+=.... + +..+. . +....-.++++++.|+.
T Consensus 160 ----------------~~t~vt~~~~~Dp~G~----I-P~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 160 ----------------KGCTLTYVTQNDPKGS----L-PKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ----------------CCEEEEEEEecCCCCC----c-CHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677777766655433 2 12221 1 23334457788877764
No 59
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.07 E-value=0.0046 Score=65.24 Aligned_cols=121 Identities=7% Similarity=0.041 Sum_probs=86.4
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeec
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQL 416 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~ 416 (764)
|.-++|...+.+|++.|.|.+...+=.+.+ ..++.|+-++. ...++|..+..|. -+..|||.++|+-++.
T Consensus 80 k~e~~vd~s~~~v~dlL~D~~~R~~WD~~~-~e~evI~~id~--------d~~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~ 149 (235)
T cd08873 80 CVELKVQTCASDAFDLLSDPFKRPEWDPHG-RSCEEVKRVGE--------DDGIYHTTMPSLT-SEKPNDFVLLVSRRKP 149 (235)
T ss_pred EEEEEecCCHHHHHHHHhCcchhhhhhhcc-cEEEEEEEeCC--------CcEEEEEEcCCCC-CCCCceEEEEEEEEec
Confidence 333448889999999999986554444433 22355555543 2245665555555 4889999999999984
Q ss_pred CCC--cEEEEEEecc-CccccccCccccccccCCceeeeeCCCCeeEEEEEEeee
Q 004271 417 SAE--QWAIVDVSID-KVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLE 468 (764)
Q Consensus 417 ~~g--~w~VvDvS~d-~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e 468 (764)
.++ ..+|.=.|+. ...+ +...++|.+.+=.|++|++.++|.|+||.+-|++
T Consensus 150 ~~~~~~~~I~~~SV~h~~~P-p~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 150 ATDGDPYKVAFRSVTLPRVP-QTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred cCCCCeEEEEEeeeecccCC-CCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 443 3777777765 2222 2346899999999999999999999999999986
No 60
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.99 E-value=0.0084 Score=62.04 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=82.6
Q ss_pred CCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeecc
Q 004271 547 SSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLA 626 (764)
Q Consensus 547 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 626 (764)
-...+|. + ....++|+|-++.. +|...+.. + .+ -+++||+.|+++|.|...|.+||..... ++ |.
T Consensus 19 ~~~~gW~-l-~~~~~gI~Vy~k~~---~~~~~~~~-g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~--~~----vl 83 (205)
T cd08874 19 QATAGWS-Y-QCLEKDVVIYYKVF---NGTYHGFL-G-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKT--AR----IH 83 (205)
T ss_pred hccCCcE-E-EecCCCEEEEEecC---CCCcceEE-E-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhh--ee----ee
Confidence 4567994 5 34558999999864 33444444 3 34 3499999999999999999999974432 11 22
Q ss_pred cCCCCCCeEEEEee--e-c-----cCCCeEEEEeeecCCcceEEE-EcccccccccccccCCCCCCccccCCccEEccCC
Q 004271 627 KGQDRGNAVNIQTM--K-S-----KENSMWLLQDSYTNAYESMVV-YAPVDITGMQSVITGCDSSNIAILPSGFSILPDG 697 (764)
Q Consensus 627 ~g~~~gn~vsllr~--~-~-----~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~Ds~~v~lLPSGF~I~Pdg 697 (764)
+-.+... .|++. + . .++++.+|+- +....+.++| ---|+-+.+-. .+.+==.+..+++||.|.|.-
T Consensus 84 ~~~~~d~--~i~y~~~~~Pwp~~~~~RDfV~l~~-~~~~~~~~vi~~~SV~~~~~P~--~~~~~VR~~~~~~gw~i~P~~ 158 (205)
T cd08874 84 KTFTEDI--CLVYLVHETPLCLLKQPRDFCCLQV-EAKEGELSVVACQSVYDKSMPE--PGRSLVRGEILPSAWILEPVT 158 (205)
T ss_pred eecCCCe--EEEEEEecCCCCCCCCCCeEEEEEE-EEECCCcEEEEEEecccccCCC--CCCCeEEeeeEeeeEEEEECc
Confidence 2123222 34443 2 1 3488888885 4444333333 21122211100 000001345788999999961
Q ss_pred CCCCCCccCCcccccccCCCceEEEeeeeecc
Q 004271 698 LESRPLVITSRQEEKITEGGSLLSIAFQILTN 729 (764)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 729 (764)
. +..+.|.||--+|+=-.
T Consensus 159 ~--------------~g~~~t~vty~~q~DPg 176 (205)
T cd08874 159 V--------------EGNQYTRVIYIAQVALC 176 (205)
T ss_pred c--------------CCCCcEEEEEEEEECCC
Confidence 0 01145777766666544
No 61
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.90 E-value=0.04 Score=57.06 Aligned_cols=171 Identities=19% Similarity=0.217 Sum_probs=107.1
Q ss_pred CCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeecccC
Q 004271 549 YHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKG 628 (764)
Q Consensus 549 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g 628 (764)
.++|... ..++++.|.++++.+..| =| .++.--+|.+|+.||+||.|..+|.+||-.+.. .+.+-+|
T Consensus 21 ~~gWk~~--k~~~~~~v~~k~~~~~~g----kl--~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I--- 87 (204)
T cd08904 21 TSGWKVV--KTSKKITVSWKPSRKYHG----NL--YRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI--- 87 (204)
T ss_pred ccCCeEE--ecCCceEEEEEEcCCCCc----eE--EEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe---
Confidence 4899977 345899999998765444 23 567778899999999999999999999963322 3444444
Q ss_pred CCCCCeEEEEeeec------cCCCeEEEEeeec-CCcceEEE-EcccccccccccccCCCCCCc--cccCCccEEccCCC
Q 004271 629 QDRGNAVNIQTMKS------KENSMWLLQDSYT-NAYESMVV-YAPVDITGMQSVITGCDSSNI--AILPSGFSILPDGL 698 (764)
Q Consensus 629 ~~~gn~vsllr~~~------~~~~~liLQes~t-d~sgs~vV-yAPvD~~~m~~vm~G~Ds~~v--~lLPSGF~I~Pdg~ 698 (764)
+...+|...+..+ .+++.+.+|-..- +. +.+++ +.-|+-+.+- .-+.+| -..|+||.|.|...
T Consensus 88 -d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~P-----p~~g~VRa~n~~~G~~i~pl~~ 160 (204)
T cd08904 88 -DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQCP-----PSSNYIRGYNHPCGYVCSPLPE 160 (204)
T ss_pred -CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCCC-----CCCCcEEEeeeccEEEEEECCC
Confidence 6666777766542 1277777766322 33 33433 4445544431 113444 36899999999752
Q ss_pred CCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh--HhhhhHHHHHHHHHhh
Q 004271 699 ESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS--VNTLISCTLRNIKTSL 759 (764)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al 759 (764)
..++|.||.-+|+=.... |...-|.. -.+++ ..+...|.||
T Consensus 161 ---------------~p~~t~l~~~~~~DlkG~----lP~~vv~~~~~~~~~-~f~~~~~~~~ 203 (204)
T cd08904 161 ---------------NPAYSKLVMFVQPELRGN----LSRSVIEKTMPTNLV-NLILDAKDGI 203 (204)
T ss_pred ---------------CCCceEEEEEEEeCCCCC----CCHHHHHHHhHHHHH-HHHHHHHHhc
Confidence 124689999888544433 33323332 23333 3666777665
No 62
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.59 E-value=0.12 Score=52.75 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=102.0
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeeccc
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAK 627 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~ 627 (764)
...+|.... .-++|+|.+|+..+ +.| +.--+...-++.+|..||+.|.| .|.+||...- ..+.+-.|
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i-- 83 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL-- 83 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe--
Confidence 467998552 33799999999632 222 33457788889999999999987 5899995321 12334444
Q ss_pred CCCCCCeEEEEeeec----cCCCeEEEEeeecC-CcceEEEE-cccccc-cccccccCCCCCC--ccccCCccEEccCCC
Q 004271 628 GQDRGNAVNIQTMKS----KENSMWLLQDSYTN-AYESMVVY-APVDIT-GMQSVITGCDSSN--IAILPSGFSILPDGL 698 (764)
Q Consensus 628 g~~~gn~vsllr~~~----~~~~~liLQes~td-~sgs~vVy-APvD~~-~m~~vm~G~Ds~~--v~lLPSGF~I~Pdg~ 698 (764)
+..+.|--...+. .++++.+++-...+ ..|+++|. .-|+-+ .+ -+.+ +..+++||.|-|.+.
T Consensus 84 --d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~~ 154 (197)
T cd08869 84 --DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCGS 154 (197)
T ss_pred --cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECCC
Confidence 2334433333332 23677666543433 45555543 223321 11 0123 357889999999762
Q ss_pred CCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHhHhhhhHHHHHHHHHhhcc
Q 004271 699 ESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDSVNTLISCTLRNIKTSLQC 761 (764)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~tv~~li~~tv~~Ik~Al~~ 761 (764)
++|.+|--.|+=.... +..=-+-..+++++..|++|++.+.|
T Consensus 155 -----------------~~t~vty~~~~Dp~G~----iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 155 -----------------GKSRVTHICRVDLRGR----SPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred -----------------CCeEEEEEEEECCCCC----CCceeecchHhHHHHHHHHHHhhccC
Confidence 3566766555544322 22222344668888999999998876
No 63
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.57 E-value=0.016 Score=61.18 Aligned_cols=130 Identities=7% Similarity=0.078 Sum_probs=91.8
Q ss_pred eeeceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhccc-CcccCceeEEEEee
Q 004271 335 ASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLT-PMVPTREVYFVRYC 413 (764)
Q Consensus 335 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~S-PLvp~Re~~flRyc 413 (764)
+-|.-..|...+..|++.|.|.+...+=.+.+ ..++.|+-++... . +|...-.|- |+ ..|||-++|--
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~-~e~~vI~qld~~~--------~-vY~~~~pPw~Pv-k~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF-LSCEVIDWVSEDD--------Q-IYHITCPIVNND-KPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhh-ceEEEEEEeCCCc--------C-EEEEecCCCCCC-CCceEEEEEEE
Confidence 44555578899999999999987555444443 2236666655322 1 355443332 44 89999998777
Q ss_pred eecC-CCc-EEEEEEeccC-ccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccc
Q 004271 414 KQLS-AEQ-WAIVDVSIDK-VEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMY 478 (764)
Q Consensus 414 kq~~-~g~-w~VvDvS~d~-~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 478 (764)
.+.. +|. ++|.=.|+.. ..+ +...++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..-
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~P-p~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~ 212 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVP-PSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFA 212 (236)
T ss_pred EecCCCCCEEEEEEeecccccCC-CCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheE
Confidence 7666 885 8888888864 333 2346899999999999999999999999999995 45565443
No 64
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.53 E-value=0.17 Score=52.48 Aligned_cols=171 Identities=19% Similarity=0.292 Sum_probs=103.0
Q ss_pred CCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhcccccchhhh-hcCCCccceeee
Q 004271 547 SSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLP-VSPNVLFDFLRDEAHRNEWDI-MSNGGPVQTIAN 624 (764)
Q Consensus 547 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~-l~~g~~vqe~~~ 624 (764)
....+|.... +-++|.|.++|..+ |.|.-++. .|+=+| +|.+.|+|.|+| |..||. |... ..|..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d--~~~l~lwk---~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~---~~Ie~ 90 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD--GHPLRLWK---VSTEVEAPPSVVLQRVLRE---RHLWDEDLLHS---QVIEA 90 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC--CCceEEEE---EEEEecCCCHHHHHHHhhc---hhhhhHHHHhh---hhhee
Confidence 4456898652 34789999999754 56655554 455568 999999999999 999994 3332 22333
Q ss_pred cccCCCCCCeEEEEeeecc---CCCeEEEEeee-cC-CcceEEEEcc-cccccccccccCCCCCCccccCCccEEccCCC
Q 004271 625 LAKGQDRGNAVNIQTMKSK---ENSMWLLQDSY-TN-AYESMVVYAP-VDITGMQSVITGCDSSNIAILPSGFSILPDGL 698 (764)
Q Consensus 625 ia~g~~~gn~vsllr~~~~---~~~~liLQes~-td-~sgs~vVyAP-vD~~~m~~vm~G~Ds~~v~lLPSGF~I~Pdg~ 698 (764)
| +..|.|-=.-.+.+ .+--|++|-++ +| +.|++++.+- |+=+.-. +.|| --...|=|||-|=|.|.
T Consensus 91 L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g~ 162 (205)
T cd08907 91 L----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCGM 162 (205)
T ss_pred e----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECCC
Confidence 3 34444444434332 24446666666 33 5666666541 3322211 1222 22345668888888652
Q ss_pred CCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHhH-hhhhHHHHHHHHHhhc
Q 004271 699 ESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDSV-NTLISCTLRNIKTSLQ 760 (764)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~tv-~~li~~tv~~Ik~Al~ 760 (764)
|+|-||==.|+=.... .++=+..| ..|++.-+.||+..+.
T Consensus 163 -----------------g~s~ltyi~rvD~rG~-----~P~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 163 -----------------GRSRLTHICRADLRGR-----SPDWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred -----------------CCeEEEEEEEeCCCCC-----CcHHHHHhHHHHHHHHHHHHHhhcc
Confidence 5788886666655555 44555555 5566777889988764
No 65
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.38 E-value=0.039 Score=58.47 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=85.3
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccC--cccCceeEEEEeee
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTP--MVPTREVYFVRYCK 414 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SP--Lvp~Re~~flRyck 414 (764)
|.-++|...+..|.+.|.|.+...+=.+.+ ..++.|+-++.. . . +|-.. .+.+ -+..|||-.++...
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~-~e~~vIe~id~~-------~-~-vY~v~-~~p~~~pvs~RDfV~~~s~~ 152 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHY-RSCELVQQVDED-------D-A-IYHVT-SPSLSGHGKPQDFVILASRR 152 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhc-cEEEEEEecCCC-------c-E-EEEEe-cCCCCCCCCCCeEEEEEEEE
Confidence 334688999999999999987665555554 233555555431 1 1 22221 1222 58899999999886
Q ss_pred ecCC-C-cEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeecccccccc
Q 004271 415 QLSA-E-QWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTM 477 (764)
Q Consensus 415 q~~~-g-~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 477 (764)
+.++ | .++|+=.|+.--.--+...++|.+.+..|++|++.++|.|+||++-|++ +..+|..
T Consensus 153 ~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 153 KPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred eccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 6544 4 4656555543211111346899999999999999999999999999998 3355543
No 66
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.27 E-value=0.0039 Score=77.44 Aligned_cols=61 Identities=23% Similarity=0.464 Sum_probs=57.5
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
+|++|++++..|++.+...|....||...+.+.|...+++..+.|++||||-|+|.|+...
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 5778899999999999999999999999999999999999999999999999999997655
No 67
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.21 E-value=0.24 Score=51.07 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=79.9
Q ss_pred HHHHHHhhhcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcC
Q 004271 536 MTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSN 615 (764)
Q Consensus 536 M~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~ 615 (764)
++..|...+.. .++|... ...++|+|.+|... .+.+++.+.-..++.|+..++++|+|-+.+.+|+-.+.
T Consensus 10 ~~~~~~~~l~~--~~~W~~~--~~~~~i~v~~r~~~------~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~ 79 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQ--KESEGIRVYYKFEP------DGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCI 79 (215)
T ss_pred HHHHHHhcccC--CCCcEEe--ccCCCeEEEEEeCC------CCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccce
Confidence 44566666665 6689977 24489999999863 23488999999999999999999999999999996432
Q ss_pred CCccceeeecccCCCCCCeEEEEeeec----cCCCeEEEEeeecC--CcceEEEEc
Q 004271 616 GGPVQTIANLAKGQDRGNAVNIQTMKS----KENSMWLLQDSYTN--AYESMVVYA 665 (764)
Q Consensus 616 g~~vqe~~~ia~g~~~gn~vsllr~~~----~~~~~liLQes~td--~sgs~vVyA 665 (764)
....+..+ +..+.|..++++. .++++++....+.+ ..|+++|+.
T Consensus 80 --~~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 80 --RSKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred --eeEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 12333333 4456788887763 23777765444433 677776654
No 68
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.94 E-value=0.67 Score=47.50 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=76.0
Q ss_pred CCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhh-hcccccchhhhhcCCCccceeeeccc
Q 004271 549 YHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFL-RDEAHRNEWDIMSNGGPVQTIANLAK 627 (764)
Q Consensus 549 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL-rd~~~R~eWd~l~~g~~vqe~~~ia~ 627 (764)
..+|... ....++|.|.+|.. +| .+-+ .++...+++||..||++| .|.+.|.+||-.+.. ++.+-.+
T Consensus 23 ~~~W~l~-~~~~~~i~i~~r~~---~~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~-- 90 (208)
T cd08868 23 DPGWKLE-KNTTWGDVVYSRNV---PG--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI-- 90 (208)
T ss_pred CCCceEE-EecCCCCEEEEEEc---CC--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe--
Confidence 4489866 33324899999985 33 2334 445557799999999865 588999999964432 3444444
Q ss_pred CCCCCCeEEEEeeec------cCCCeEEEEeeecCCcceEEE-EcccccccccccccCCCCCC--ccccCCccEEccCC
Q 004271 628 GQDRGNAVNIQTMKS------KENSMWLLQDSYTNAYESMVV-YAPVDITGMQSVITGCDSSN--IAILPSGFSILPDG 697 (764)
Q Consensus 628 g~~~gn~vsllr~~~------~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~Ds~~--v~lLPSGF~I~Pdg 697 (764)
+....|--..... .+++++.++-..-+. +.++| ...|+-+.+ ..-+.+ +..+++||.|-|++
T Consensus 91 --d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 91 --DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred --cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECC
Confidence 2233443322221 237777776644333 55544 333443321 112333 45788999999975
No 69
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.80 E-value=0.51 Score=46.30 Aligned_cols=144 Identities=17% Similarity=0.249 Sum_probs=89.6
Q ss_pred CCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeecccCC
Q 004271 550 HVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQ 629 (764)
Q Consensus 550 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~ 629 (764)
.+|..+. ..++|+|..++..+ . .+...++..-++.|+..|+++|.|.+.|.+||-.... ...+..+..
T Consensus 15 ~~W~~~~--~~~~v~vy~~~~~~-~-----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~--~~vl~~~~~-- 82 (193)
T cd00177 15 EGWKLVK--EKDGVKIYTKPYED-S-----GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEE--FEVIEEIDE-- 82 (193)
T ss_pred CCeEEEE--ECCcEEEEEecCCC-C-----CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceE--EEEEEEeCC--
Confidence 5899773 33689998877632 1 1334566777899999999999999999999953222 233333322
Q ss_pred CCCCeEEEEeeec----cCCCeEEEEeeecCC-cceEEEEcccccccccccccCCCCCCc--cccCCccEEccCCCCCCC
Q 004271 630 DRGNAVNIQTMKS----KENSMWLLQDSYTNA-YESMVVYAPVDITGMQSVITGCDSSNI--AILPSGFSILPDGLESRP 702 (764)
Q Consensus 630 ~~gn~vsllr~~~----~~~~~liLQes~td~-sgs~vVyAPvD~~~m~~vm~G~Ds~~v--~lLPSGF~I~Pdg~~~~~ 702 (764)
+..|.....+. .+++++++..+..+. ..-+++..+||.+.. ..-+.+| .++++||.|-|.+.
T Consensus 83 --~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~~---- 151 (193)
T cd00177 83 --HTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLDP---- 151 (193)
T ss_pred --CeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECCC----
Confidence 23444443332 237888888766565 345666677776521 1111333 36688888888641
Q ss_pred CccCCcccccccCCCceEEEeeeeecc
Q 004271 703 LVITSRQEEKITEGGSLLSIAFQILTN 729 (764)
Q Consensus 703 ~~~~~~~~~~~~~~gsllTvaFQil~~ 729 (764)
++|.+|.-+|+=..
T Consensus 152 -------------~~~~vt~~~~~D~~ 165 (193)
T cd00177 152 -------------GKTKVTYVLQVDPK 165 (193)
T ss_pred -------------CCEEEEEEEeeCCC
Confidence 46777777776544
No 70
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.50 E-value=0.52 Score=48.71 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcc--cccchhhhhcCCCccceeeec
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDE--AHRNEWDIMSNGGPVQTIANL 625 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~--~~R~eWd~l~~g~~vqe~~~i 625 (764)
..++|.... ..++|+|.+|++...+|.. -++-.-+|++|+.||+||.|. ..|.+||..+.. ++.+-+|
T Consensus 20 ~~~~W~~~~--~~~~i~v~~~~~~~~~~~~------~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~i 89 (208)
T cd08903 20 DESGWKTCR--RTNEVAVSWRPSAEFAGNL------YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEAI 89 (208)
T ss_pred cccCCEEEE--cCCCEEEEeeecCCCCCcE------EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEEe
Confidence 567898763 4479999999875545532 445566799999999999864 478999964432 3444444
Q ss_pred ccCCCCCCeEEEEeeec------cCCCeEEEEeeecCCcceEEEEc-ccccccccccccCCCCCCcc--ccCCccEEccC
Q 004271 626 AKGQDRGNAVNIQTMKS------KENSMWLLQDSYTNAYESMVVYA-PVDITGMQSVITGCDSSNIA--ILPSGFSILPD 696 (764)
Q Consensus 626 a~g~~~gn~vsllr~~~------~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~Ds~~v~--lLPSGF~I~Pd 696 (764)
+....|..++... .++++++++-.-....|.+++.. .++-+.+ ...+.+|- .-|+|+.|.|.
T Consensus 90 ----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~~ 160 (208)
T cd08903 90 ----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEPV 160 (208)
T ss_pred ----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEEC
Confidence 2333443332221 22777777664445566666544 2222121 11133442 45677777764
Q ss_pred CCCCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh-HhhhhHHHHHHHHHhhc
Q 004271 697 GLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS-VNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 697 g~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 760 (764)
-. ..++|.+|.=+|+=-. -.|...-|.. +...+-.+++.++.+|.
T Consensus 161 ~~---------------~~~~t~v~~~~~~Dpk----G~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 161 PG---------------EPDKTQLVSFFQTDLS----GYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CC---------------CCCceEEEEEEEeccC----CCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 21 0135666655554333 3333333322 22333357777777664
No 71
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=95.47 E-value=0.57 Score=47.28 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=80.2
Q ss_pred CCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhH-HHHhhhcccccchhhhhcCCCccceeeeccc
Q 004271 549 YHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNV-LFDFLRDEAHRNEWDIMSNGGPVQTIANLAK 627 (764)
Q Consensus 549 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~-vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~ 627 (764)
..+|... .+..+++.+..+.. +| + ..+-..+....++.+|.. +.++|.|.+.|.+||-..-. ++.+..+.
T Consensus 18 ~~~W~~~-~~~~~~~~~~~~~~---~~-~-~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~- 88 (206)
T smart00234 18 EPGWVLS-SENENGDEVRSILS---PG-R-SPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID- 88 (206)
T ss_pred CCccEEc-cccCCcceEEEEcc---CC-C-CceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC-
Confidence 4579976 33224444444443 22 0 135678889999988875 66899999999999964432 33444443
Q ss_pred CCCCCCeEEEEeeec-----cCCCeEEEEeeecCCcceEEEEc-ccccccccccccCCCCCCc--cccCCccEEccCC
Q 004271 628 GQDRGNAVNIQTMKS-----KENSMWLLQDSYTNAYESMVVYA-PVDITGMQSVITGCDSSNI--AILPSGFSILPDG 697 (764)
Q Consensus 628 g~~~gn~vsllr~~~-----~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~Ds~~v--~lLPSGF~I~Pdg 697 (764)
.++.|-....+. .+++.+++.-...+..++++|.. .++-+.. ...+.+| .++++||.|-|.+
T Consensus 89 ---~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 89 ---NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred ---CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECC
Confidence 234444332221 23788888776666777766644 5554432 1123344 5899999999976
No 72
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.46 E-value=0.61 Score=48.01 Aligned_cols=105 Identities=19% Similarity=0.309 Sum_probs=63.8
Q ss_pred CCceeeecCCC--CcEEEEEccCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhcccccchhhhhcCCCccceeeecc
Q 004271 550 HVWNKVTSKTG--EDIRVSSRKNLNDPGEPLGVILCAVSSVWLP-VSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLA 626 (764)
Q Consensus 550 ~~W~~l~~~~~--~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 626 (764)
.+|.......+ .+|+|-.|+. +|. | +.--++...++ +||+.|+++|.|...|.+||... .|.--|.
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~---~~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~~le 90 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKP---KGT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHETLE 90 (209)
T ss_pred CcceEhhhccCCCceEEEEeccc---CCC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEEEEE
Confidence 68997743322 2388877765 222 2 23355666776 89999999999999999999643 2222232
Q ss_pred cCCCCCCeEEEEeeec----cCCCeEEEEeeecCCcceEEEEc
Q 004271 627 KGQDRGNAVNIQTMKS----KENSMWLLQDSYTNAYESMVVYA 665 (764)
Q Consensus 627 ~g~~~gn~vsllr~~~----~~~~~liLQes~td~sgs~vVyA 665 (764)
...+.++.|--..... .+++..+....+.+.-+.++|..
T Consensus 91 ~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 91 EDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred ecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 2223244443333332 24777776666666566665544
No 73
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=95.43 E-value=1.7 Score=44.54 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhc--cccc
Q 004271 530 LKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRD--EAHR 607 (764)
Q Consensus 530 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd--~~~R 607 (764)
=++.|.|..-|.. .++|.... ..++|+|.+++..+.. +-+ .++..-+|.+|+.||++|.| +..|
T Consensus 8 ~~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~~~----~~~--~k~~~~i~~~~~~v~~~l~d~~~~~r 73 (206)
T cd08867 8 EKLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTEFT----GHL--YRAEGIVDALPEKVIDVIIPPCGGLR 73 (206)
T ss_pred HHHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCCCC----CEE--EEEEEEEcCCHHHHHHHHHhcCcccc
Confidence 3455555555542 27899763 4478999998643211 222 46677789999999999999 8999
Q ss_pred chhhhhcCCCccceeeecccCCCCCCeEEEEeeec------cCCCeEEEEeeecCCcceEEEE-cccccccccccccCCC
Q 004271 608 NEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKS------KENSMWLLQDSYTNAYESMVVY-APVDITGMQSVITGCD 680 (764)
Q Consensus 608 ~eWd~l~~g~~vqe~~~ia~g~~~gn~vsllr~~~------~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~D 680 (764)
.+||.... ..+.+.+| ++.+.|..+.... .+++.+.+|-......|++++. .-|+-+.+ ..-
T Consensus 74 ~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~~ 142 (206)
T cd08867 74 LKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PPT 142 (206)
T ss_pred cccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CCC
Confidence 99995332 34556666 3344444333221 2377777774333333556544 23333322 111
Q ss_pred CCCc--cccCCccEEccCC
Q 004271 681 SSNI--AILPSGFSILPDG 697 (764)
Q Consensus 681 s~~v--~lLPSGF~I~Pdg 697 (764)
+.+| ..+++||.|-|..
T Consensus 143 ~~~VR~~~~~~g~~i~p~~ 161 (206)
T cd08867 143 PGFVRGYNHPCGYFCSPLK 161 (206)
T ss_pred CCcEEEEeecCEEEEEECC
Confidence 3343 4678999998854
No 74
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.33 E-value=1.1 Score=44.98 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhh
Q 004271 547 SSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 547 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
|.+.+|.... +.++|+|.+++.. + +.+..-.++..++.||+.||+++.|.++|.+||-
T Consensus 14 ~~~~~W~~~~--~~~~v~v~~~~~~---~---~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~ 71 (195)
T cd08876 14 APDGDWQLVK--DKDGIKVYTRDVE---G---SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMP 71 (195)
T ss_pred CCCCCCEEEe--cCCCeEEEEEECC---C---CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHh
Confidence 4555698763 3479999998863 2 1244557777899999999999999999999995
No 75
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=95.21 E-value=1.2 Score=46.08 Aligned_cols=144 Identities=9% Similarity=0.114 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHH-hhhcccccch
Q 004271 531 KLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFD-FLRDEAHRNE 609 (764)
Q Consensus 531 kLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~-fLrd~~~R~e 609 (764)
+.++-=+..|..-+.. ..+|..- ...-++|+|-+++. ++. | .+-+.-+-+++||+.||+ .|.|.+.|.+
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~-~~~~~gi~V~s~~~---~~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~ 77 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFE-KNNDNGDTVYTLEV---PFH--G--KTFILKAFMQCPAELVYQEVILQPEKMVL 77 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEE-EecCCCCEEEEecc---CCC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccc
Confidence 3334444445444433 3589854 22237899998765 222 2 233677778999999985 7899999999
Q ss_pred hhhhcCCCccceeeecccCCCCCCeEEEEeeec-------cCCCeEEEEeeecCCcceEEEEcccccccccccccCCCCC
Q 004271 610 WDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKS-------KENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITGCDSS 682 (764)
Q Consensus 610 Wd~l~~g~~vqe~~~ia~g~~~gn~vsllr~~~-------~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~Ds~ 682 (764)
||.-.. .++.+..| ++.+.|. ..+.. .++++.+++-.+-+..+..++...++.+.+ ..-+.
T Consensus 78 W~~~~~--~~~vi~~~----~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~ 145 (209)
T cd08906 78 WNKTVS--ACQVLQRV----DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSK 145 (209)
T ss_pred cCccch--hhhheeec----cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCC
Confidence 995221 23444444 2333433 22221 238888887766666665555555544432 22344
Q ss_pred Cc--cccCCccEEccC
Q 004271 683 NI--AILPSGFSILPD 696 (764)
Q Consensus 683 ~v--~lLPSGF~I~Pd 696 (764)
+| ...++||.|.|.
T Consensus 146 ~VR~~~~~~G~~i~~~ 161 (209)
T cd08906 146 YVRGENGPGGFVVLKS 161 (209)
T ss_pred eEEEeeeccEEEEEEC
Confidence 44 358999999984
No 76
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.77 E-value=0.034 Score=61.36 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=48.5
Q ss_pred CCCCcccCCHHHHHHHHHhh-h--cCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 109 KRKKYHRHTAEQIREMEALF-K--ESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F-~--~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
++|.+..+......+|+... + ..+||+..++..||+++||+..||..||-|.|-|..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCC
Confidence 44555678888888888763 2 3689999999999999999999999999999987664
No 77
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=94.36 E-value=1.4 Score=45.91 Aligned_cols=169 Identities=22% Similarity=0.295 Sum_probs=96.4
Q ss_pred CceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeecccCCC
Q 004271 551 VWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQD 630 (764)
Q Consensus 551 ~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~~ 630 (764)
+|..+. .-+.+.+..+|. .+|.| +.--+.++=+|.+|..|...|-|+ |.+||.-.- .++.+..| +
T Consensus 28 ~w~~~~--~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l----d 92 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL----D 92 (204)
T ss_pred CCcccC--CCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----C
Confidence 676552 236788889986 35655 556678888898888888777775 999995221 12334443 2
Q ss_pred CCCeEEEEeeec----cCCCeEEEEeeecC-CcceEEEEcc-cccccccccccCCCCCCccccCCccEEccCCCCCCCCc
Q 004271 631 RGNAVNIQTMKS----KENSMWLLQDSYTN-AYESMVVYAP-VDITGMQSVITGCDSSNIAILPSGFSILPDGLESRPLV 704 (764)
Q Consensus 631 ~gn~vsllr~~~----~~~~~liLQes~td-~sgs~vVyAP-vD~~~m~~vm~G~Ds~~v~lLPSGF~I~Pdg~~~~~~~ 704 (764)
+.+.|-=..++. .++++.+++-..++ .-|++++... |+-+.+- .++ -.+..+-+|+.|-|.|
T Consensus 93 ~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~g------- 160 (204)
T cd08908 93 SQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPCG------- 160 (204)
T ss_pred CCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEECC-------
Confidence 333333333332 23777777553433 4666666665 4433321 010 1233345555565644
Q ss_pred cCCcccccccCCCceEEEeeeeeccCCcccccccchHHhHhhhhHHHHHHHHHhhc
Q 004271 705 ITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDSVNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 705 ~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~tv~~li~~tv~~Ik~Al~ 760 (764)
.|+|-||--.|+=... .+..=-+-....|++.-+.||+..+.
T Consensus 161 ----------~g~t~vtyi~~~DPgG----~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 161 ----------SGKSKLTYMCRIDLRG----HMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred ----------CCcEEEEEEEEeCCCC----CCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 1567777644443332 23333444468888889999998764
No 78
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=94.13 E-value=0.88 Score=48.30 Aligned_cols=66 Identities=17% Similarity=0.351 Sum_probs=48.2
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeec
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANL 625 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~i 625 (764)
..++|... -..++|+|.++.+ ..+++-..=+-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~--~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA--SSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE--EcCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46789854 3448999999873 1244444444589999999999999999999996 43445556655
No 79
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=93.77 E-value=2.4 Score=44.95 Aligned_cols=183 Identities=14% Similarity=0.148 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCceeeecCC----C-CcE-EEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhh
Q 004271 529 ILKLAQRMTWSFCRAIGASSYHVWNKVTSKT----G-EDI-RVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLR 602 (764)
Q Consensus 529 ~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~----~-~dv-rv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLr 602 (764)
|+.||..-+.-|- .+.-...-.|.+...+. + |.. ++..+.. .+..+...+..+-++-.+.+.|..|.++|.
T Consensus 4 ~~~lA~~am~Ell-~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~--~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 4 LLELAEEAMDELL-KLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG--GSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred HHHHHHHHHHHHH-HHhccCCCCceecCCCCccccCHHHHhhcccCcC--CCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 8899999999998 44455577899874321 2 222 2222221 122223457788899999999999999999
Q ss_pred cccccch-hhhhcCCCccceeeecccCCCCCCeEEEEeeec-------cCCCeEEEEeeecCCcceEEEEc-cccccccc
Q 004271 603 DEAHRNE-WDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKS-------KENSMWLLQDSYTNAYESMVVYA-PVDITGMQ 673 (764)
Q Consensus 603 d~~~R~e-Wd~l~~g~~vqe~~~ia~g~~~gn~vsllr~~~-------~~~~~liLQes~td~sgs~vVyA-PvD~~~m~ 673 (764)
|..++.+ .+-.+.-..+-++..=..|..++..+.|+..+- ..++.++|.=|+--.-|+.+|-- .+|...
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~-- 158 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQ-- 158 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccc--
Confidence 9555555 432333222222322222334566777776551 23899999997777888877643 333210
Q ss_pred ccccCCCCC---CccccCCccEEccCCCCCCCCccCCcccccccCCCceEEEeeeeeccCCccccc
Q 004271 674 SVITGCDSS---NIAILPSGFSILPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKL 736 (764)
Q Consensus 674 ~vm~G~Ds~---~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l 736 (764)
+..-+. .--.+||||-|=|-. .|+|-+|+-=++-++..|.-.+
T Consensus 159 ---~~p~~~~~~r~~~~PSGcLIq~~~-----------------nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 159 ---TAPPPASFVRCRRLPSGCLIQDMP-----------------NGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred ---cCCCCCCccEEEEecCcEEEEECC-----------------CCceEEEEEEEEeccCCccccc
Confidence 111111 234899999998843 1578888887777776544333
No 80
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.35 E-value=2.4 Score=43.77 Aligned_cols=176 Identities=13% Similarity=0.173 Sum_probs=91.2
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeec-ccChhHHHHhhhcccccchhhhhcCCCccceeeecc
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWL-PVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLA 626 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wL-pv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 626 (764)
-..+|.... ..++|+|-.|... |. |+. --++...+ ++|++.+|++|.|...|.+||-.. +|.--|.
T Consensus 19 ~~~~W~l~~--~~~~i~Vy~r~~~---~s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~le 85 (207)
T cd08911 19 EPDGWEPFI--EKKDMLVWRREHP---GT--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVVD 85 (207)
T ss_pred cCCCcEEEE--EcCceEEEEeccC---CC--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEEE
Confidence 345698763 2367999888763 22 222 34454445 699999999999999999999643 2322222
Q ss_pred cCCCCCCeEEEEeeec----cCCCeEEEEeeecCCc-ceEEEEc-ccccccccccccCCCCC--CccccCCccEEccCCC
Q 004271 627 KGQDRGNAVNIQTMKS----KENSMWLLQDSYTNAY-ESMVVYA-PVDITGMQSVITGCDSS--NIAILPSGFSILPDGL 698 (764)
Q Consensus 627 ~g~~~gn~vsllr~~~----~~~~~liLQes~td~s-gs~vVyA-PvD~~~m~~vm~G~Ds~--~v~lLPSGF~I~Pdg~ 698 (764)
+..+.++.|--.+... .++++.+-+-...|.. +.++|.. -|+-+.. ..-+. .|..+.+|+.|-|.+.
T Consensus 86 ~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~~ 160 (207)
T cd08911 86 EDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHKS 160 (207)
T ss_pred ccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCCC
Confidence 2223344444443332 2366655554344543 3434432 1221110 01111 2445677888877641
Q ss_pred CCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh--HhhhhHHHHHHHHHhhc
Q 004271 699 ESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS--VNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al~ 760 (764)
...+|+-++.-++ . .|...|.. ++.. +...+-.++++++.|..
T Consensus 161 --------------~~~~~~~~~~~~~--~--dPgG~IP~-~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 161 --------------FDEPGFEFVLTYF--D--NPGVNIPS-YITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred --------------CCCCCeEEEEEEE--e--CCCCccCH-HHHHHHHHhhccHHHHHHHHHHh
Confidence 0124565554333 2 33333322 2221 23333358888888763
No 81
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=92.94 E-value=3.9 Score=41.06 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhh
Q 004271 532 LAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 532 LaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
|+.+....|..-. .....+|.......+.++.+..... +.+ ..+...++..-++.++..+|..|.|... +||
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~----~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd 73 (206)
T PF01852_consen 2 LAEELMQEELALA-QEDEDGWKLYKDKKNGDVYYKKVSP----SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QWD 73 (206)
T ss_dssp HHHHHHHHHHHHH-HHTCTTCEEEEEETTTCEEEEEEEC----SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HHS
T ss_pred HHHHHHHHHHHHh-hcCCCCCeEeEccCCCeEEEEEeCc----ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hcc
Confidence 5566666666433 4667799988523334444333221 111 1345678888999888877777776444 999
Q ss_pred hhcCCCccceeeecccCCCCCCeEEEEeeec------cCCCeEEEEeeecCCcceEEEE-cccccccccccccCCCCCCc
Q 004271 612 IMSNGGPVQTIANLAKGQDRGNAVNIQTMKS------KENSMWLLQDSYTNAYESMVVY-APVDITGMQSVITGCDSSNI 684 (764)
Q Consensus 612 ~l~~g~~vqe~~~ia~g~~~gn~vsllr~~~------~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~Ds~~v 684 (764)
-... .++.+..|. ++..|.....+. .+++.++++-...+..|.++|. ..||-+..... .+.+|
T Consensus 74 ~~~~--~~~~le~~~----~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~V 143 (206)
T PF01852_consen 74 KMCV--EAEVLEQID----EDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGYV 143 (206)
T ss_dssp TTEE--EEEEEEEEE----TTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTSE
T ss_pred cchh--hheeeeecC----CCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCcc
Confidence 6433 234444442 234555544432 1277777777555566665554 57777664322 23444
Q ss_pred c--ccCCccEEccCCCCCCCCccCCcccccccCCCceEEEeeeeeccCC
Q 004271 685 A--ILPSGFSILPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNS 731 (764)
Q Consensus 685 ~--lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~ 731 (764)
- +++|||.|-|.+. +.|.+|.-.|+=....
T Consensus 144 R~~~~~s~~~i~~~~~-----------------~~~~vt~~~~~D~~G~ 175 (206)
T PF01852_consen 144 RAEILISGWVIRPLGD-----------------GRTRVTYVSQVDPKGW 175 (206)
T ss_dssp EEEEESEEEEEEEETT-----------------CEEEEEEEEEEESSSS
T ss_pred eeeeeeEeEEEEEccC-----------------CCceEEEEEEECCCCC
Confidence 4 8999999999762 2377877777654433
No 82
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=92.93 E-value=1.4 Score=46.87 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=45.3
Q ss_pred CCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhh
Q 004271 547 SSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 547 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
...++|..- -+.++|+|-++. +. -+++-..-+-+++|++.||++|.|.+.|.+||.
T Consensus 53 a~~~~W~l~--~dkdgIkVytr~-----~s---~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~ 108 (236)
T cd08914 53 AAKSGWEVT--STVEKIKIYTLE-----EH---DVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDP 108 (236)
T ss_pred cccCCCEEE--EccCCEEEEEec-----CC---CcEEEEEEEEEcCCHHHHHHHHhChhhhchhHH
Confidence 346899854 244899999984 22 157888888889999999999999999999996
No 83
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=92.81 E-value=3.7 Score=42.78 Aligned_cols=169 Identities=19% Similarity=0.268 Sum_probs=93.8
Q ss_pred CCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhh-hcCCCccceeeecccC
Q 004271 550 HVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDI-MSNGGPVQTIANLAKG 628 (764)
Q Consensus 550 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~-l~~g~~vqe~~~ia~g 628 (764)
.+|..+. ..+++.+..+|.. +|.|.-+ -++++=+|.||..|+..+-+ .|.+||. +..+ ..+-+|
T Consensus 27 k~w~~~~--~~~~~e~~ykK~~--d~~~lk~---~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~---~~ie~l--- 91 (205)
T cd08909 27 KGWISCS--SSDNTELAYKKVG--DGNPLRL---WKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQW---KVVETL--- 91 (205)
T ss_pred cCCcccC--CcCCeEEEEecCC--CCCceEE---EEEEEEeCCCHHHHHHHHHh--hHhhHHhhccee---EEEEEe---
Confidence 3666552 2367778888864 4555333 45688889666666544433 6999995 3332 223333
Q ss_pred CCCCCeEEEEeeecc----CCCeEEEEeeecC-CcceEEE-EcccccccccccccCCCCCCccccCCccEEccCCCCCCC
Q 004271 629 QDRGNAVNIQTMKSK----ENSMWLLQDSYTN-AYESMVV-YAPVDITGMQSVITGCDSSNIAILPSGFSILPDGLESRP 702 (764)
Q Consensus 629 ~~~gn~vsllr~~~~----~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~Ds~~v~lLPSGF~I~Pdg~~~~~ 702 (764)
+..+.|=-..++.+ +++..+++-..+| ..|++++ +..|+-+.-.. . |+ --+.++=+||.|-|.|.
T Consensus 92 -d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~-~-g~--VRa~~~~~gylI~P~~~---- 162 (205)
T cd08909 92 -DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL-L-GG--VRAVVLDSQYLIEPCGS---- 162 (205)
T ss_pred -CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC-C-Cc--EEEEEEcCcEEEEECCC----
Confidence 22244444444432 3666666664444 4666543 33344332111 1 11 13456778999999762
Q ss_pred CccCCcccccccCCCceEEEeeeeeccCCcccccccc-hHHhHhhhhHHHHHHHHHhhc
Q 004271 703 LVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTME-SVDSVNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 703 ~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~-sv~tv~~li~~tv~~Ik~Al~ 760 (764)
|+|.||-=-|+=.... .++ -+-.+..|++.-+.||+..+.
T Consensus 163 -------------g~trvt~i~~vDpkG~-----~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 -------------GKSRLTHICRVDLKGH-----SPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred -------------CCEEEEEEEEecCCCC-----ChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 4566665444433333 333 344467888889999998764
No 84
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=92.25 E-value=0.033 Score=46.23 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhh
Q 004271 120 QIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRT 162 (764)
Q Consensus 120 Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRa 162 (764)
-++.|++.|...+++......+|..+.+|+..||+.||-.|+.
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~~ 51 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERMQ 51 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS-
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhcc
Confidence 3567999999999999999999999999999999999966543
No 85
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=91.99 E-value=4.4 Score=41.86 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=58.8
Q ss_pred CCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhcccccchhhhhcCCCccceeeec
Q 004271 547 SSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLP-VSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANL 625 (764)
Q Consensus 547 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~i 625 (764)
-.+.+|.... ..++|+|-+|.. +|. .+.--++...++ ++|+.++++|.|.+.|.+||...- ++...
T Consensus 22 ~~~~~W~l~~--~~~~i~Vy~r~~---~~s---~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-----~~~~~ 88 (207)
T cd08910 22 LDGAAWELLV--ESSGISIYRLLD---EQS---GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVK-----ELYEK 88 (207)
T ss_pred CCCCCeEEEE--ecCCeEEEEecc---CCC---CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHH-----hheee
Confidence 3445798763 236899998875 222 233567777889 999999999999999999996432 22221
Q ss_pred ccCCCCCCeEEEEeeec----cCCCeEEEEe
Q 004271 626 AKGQDRGNAVNIQTMKS----KENSMWLLQD 652 (764)
Q Consensus 626 a~g~~~gn~vsllr~~~----~~~~~liLQe 652 (764)
.++++.|--.+++. .++++++++.
T Consensus 89 ---~~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 89 ---ECDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred ---cCCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 13355555555442 2477766665
No 86
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=91.67 E-value=7.6 Score=40.45 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=41.5
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhh
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIM 613 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 613 (764)
..++|... . ..+||.|..+++...+|. | -.+---++.-|+.|+||+.+..+|.+||-.
T Consensus 21 ~~~~Wkl~-k-~~~~~~v~~k~~~ef~gk----l--~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 21 LEEEWRVA-K-KSKDVTVWRKPSEEFGGY----L--YKAQGVVEDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred cccCcEEE-E-eCCCEEEEEecCCcCCCc----e--EEEEEEecCCHHHHHHHHhcccchhcccch
Confidence 56799855 2 238899999987544443 2 122222378889999999999999999953
No 87
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=90.63 E-value=16 Score=37.80 Aligned_cols=193 Identities=9% Similarity=0.053 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhh-cccc
Q 004271 528 SILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLR-DEAH 606 (764)
Q Consensus 528 s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLr-d~~~ 606 (764)
+-.++++.....|-.-.. ...+|... ..+.++++|.++.. |+.. --.+.-.-+|+|++.||++|. |-+.
T Consensus 5 ~y~~~~~~~~~~~~~~~~--~~~~W~~~-~~~~~gi~v~s~~~---~~~~----k~~k~e~~i~~~~~~l~~~l~~d~e~ 74 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ--DQEGWKTE-IVAENGDKVLSKVV---PDIG----KVFRLEVVVDQPLDNLYSELVDRMEQ 74 (209)
T ss_pred HHHHHHHHHHHHHHHHhc--cccCCEEE-EecCCCCEEEEEEc---CCCC----cEEEEEEEecCCHHHHHHHHHhchhh
Confidence 344555555555554442 45689866 22346778888664 3322 224456678999999996666 5699
Q ss_pred cchhhhhcCCCccceeeecccCCCCCCeEEEEeeec------cCCCeEEEEeeecCCcceEEEEcccccccccccccCCC
Q 004271 607 RNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKS------KENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITGCD 680 (764)
Q Consensus 607 R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsllr~~~------~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~D 680 (764)
+.+|+..+.. ++.+.+| +...+|.-....+ .++++++++-..-+..+..++.-.++.+.+ ..-
T Consensus 75 ~~~W~~~~~~--~~vl~~i----d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~-----P~~ 143 (209)
T cd08905 75 MGEWNPNVKE--VKILQRI----GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMATHFGLM-----PEQ 143 (209)
T ss_pred hceecccchH--HHHHhhc----CCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEEEeecCCCC-----CCC
Confidence 9999964332 2223333 3334444432111 237787766633333222223322333322 111
Q ss_pred CCC--ccccCCccEEccCCCCCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh-HhhhhHHHHHHHHH
Q 004271 681 SSN--IAILPSGFSILPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS-VNTLISCTLRNIKT 757 (764)
Q Consensus 681 s~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t-v~~li~~tv~~Ik~ 757 (764)
+.+ +...++|+.+.|.+. ..+.|.+|.-+++=.. -.|..--|.. +-...-.|++.+|.
T Consensus 144 ~~~VR~~~~~~~w~l~p~~~---------------~~~~t~v~~~~~~Dpk----G~iP~~lvN~~~~~~~~~~~~~Lr~ 204 (209)
T cd08905 144 KGFIRAENGPTCIVLRPLAG---------------DPSKTKLTWLLSIDLK----GWLPKSIINQVLSQTQVDFANHLRQ 204 (209)
T ss_pred CCeEEEEeeccEEEEEECCC---------------CCCceEEEEEEeecCC----CCCCHHHHHHHhHHhHHHHHHHHHH
Confidence 222 345777777777542 1145666655554333 2222222222 13333357777777
Q ss_pred hhc
Q 004271 758 SLQ 760 (764)
Q Consensus 758 Al~ 760 (764)
.|.
T Consensus 205 ~~~ 207 (209)
T cd08905 205 RMA 207 (209)
T ss_pred HHh
Confidence 665
No 88
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=90.30 E-value=1.7 Score=45.61 Aligned_cols=139 Identities=14% Similarity=0.194 Sum_probs=94.3
Q ss_pred EeChhhHHHHhcCh---hhHhhhcccccccceEeEEee-CCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCC
Q 004271 343 FVDLPKLVQSFTDV---NQWKAMFPCLISKAATVDVIC-GGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSA 418 (764)
Q Consensus 343 ~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~vis-~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~ 418 (764)
.+.|..+-+.|+|. .+|=.+ |.+-+||+..+ +|. +++|-+.+.|.|+- .||+-++|---+.++
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~tg~--------~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~ 129 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPVTGT--------EVVYWVKKFPFPMS-NRDYVYVRRWWESDE 129 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCCCCc--------eEEEEEEeCCcccC-CccEEEEEEEEecCC
Confidence 45788999999995 688876 44449988887 443 78999999998876 599999988887777
Q ss_pred CcEEEEEEeccCccccccCccccccccCCceeee-----eCCCC-eeEEEEEEeeeeccccccccchhhhcchhhHHHHH
Q 004271 419 EQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVE-----DKSNG-HCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARH 492 (764)
Q Consensus 419 g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq-----~~~nG-~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~r 492 (764)
..-.||-.|+..----+....+|..-.=||.+|+ +-++| .|-++|++|=. -.+.+-+++-+.-+|+--
T Consensus 130 k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~------~~iP~~~v~~~~~~gmp~ 203 (219)
T KOG2761|consen 130 KDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNPG------GGIPKWVVKLAVRKGMPG 203 (219)
T ss_pred ceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECCC------CCCcHHHHHHHHHhcChH
Confidence 7778887777632111122357788888999999 55666 45666665422 134455555555555554
Q ss_pred HHHHHHHH
Q 004271 493 WMTTLQLQ 500 (764)
Q Consensus 493 wlatLqR~ 500 (764)
-+.-|..-
T Consensus 204 ~vkKm~~a 211 (219)
T KOG2761|consen 204 AVKKMEKA 211 (219)
T ss_pred HHHHHHHH
Confidence 45444433
No 89
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.83 E-value=4.7 Score=37.86 Aligned_cols=133 Identities=12% Similarity=0.099 Sum_probs=75.5
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCce-eEEEEeeee
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTRE-VYFVRYCKQ 415 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re-~~flRyckq 415 (764)
|.+-.|...+..+-++|.|.+.|.+-+|.+ .-.+++..+. ++. . ++.. .|. +.+++|+..
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~ 62 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR 62 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE
Confidence 345667778899999999999999999998 5566665432 221 1 1110 111 222333322
Q ss_pred cCCCcEEEEEEeccCccccccCcccccccc----C--Cce-eeeeCCC-CeeEEEEEEeeeeccccccccchhhhcchhh
Q 004271 416 LSAEQWAIVDVSIDKVEENIDASLAKCRKR----P--SGC-IVEDKSN-GHCKVTWVEHLECQKGTVHTMYRSIVSSGLA 487 (764)
Q Consensus 416 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~----P--SGc-lIq~~~n-G~skVtwVeH~e~d~~~v~~l~rpl~~sg~a 487 (764)
++.++.... + ....++++.. + .|+ -+++.++ |.+.|+|--|++... . ++-++++.-+-
T Consensus 63 ------v~~~~~~~~--~--~~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~---~p~~l~~~~~~ 128 (144)
T cd08866 63 ------VVLELRERE--E--FPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-F---APVFLVEFVLR 128 (144)
T ss_pred ------EEEEEEEec--C--CCceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-C---CCHHHHHHHHH
Confidence 122211100 0 0001111110 1 222 3578887 789999977777543 2 33477776677
Q ss_pred HHHHHHHHHHHHHHH
Q 004271 488 FGARHWMTTLQLQCE 502 (764)
Q Consensus 488 fgA~rwlatLqR~ce 502 (764)
=+.++-++.|+++||
T Consensus 129 ~~~~~~l~~lr~~ae 143 (144)
T cd08866 129 QDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHh
Confidence 778888888888887
No 90
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=89.48 E-value=4.1 Score=39.78 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=77.1
Q ss_pred ceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhh--hcccCcccCceeEEEEeeee
Q 004271 338 DAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAEL--QMLTPMVPTREVYFVRYCKQ 415 (764)
Q Consensus 338 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael--~v~SPLvp~Re~~flRyckq 415 (764)
.+-+|.-.+..+-+++-|..+|-+.||.+ .-+++++.|.. |.. +.+ +...+ ..+.-|.=|.+
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~----~~~~~l~~~~~----~~~----~r~~i~~~~~--g~~~~w~s~~~-- 68 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEY----AEAEVLEEDGD----TVR----FRLTMHPDAN--GTVWSWVSERT-- 68 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccce----EEEEEEEecCC----eEE----EEEEEEeccC--CEEEEEEEEEE--
Confidence 45667778999999999999999999998 66677776542 211 222 22222 12222222433
Q ss_pred cCCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHH
Q 004271 416 LSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMT 495 (764)
Q Consensus 416 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwla 495 (764)
+....|-|.=..+.. ++ ...+=--..+++.++| |+|++..+++...-. .+.-+++..-.--.-+.=++
T Consensus 69 ~~~~~~~i~~~~~~~---~p------~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 136 (146)
T cd08860 69 LDPVNRTVRARRVET---GP------FAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMA 136 (146)
T ss_pred ecCCCcEEEEEEecC---CC------cceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHH
Confidence 233334333112111 11 1122223446788887 999999998865311 33333343333334456677
Q ss_pred HHHHHHHH
Q 004271 496 TLQLQCER 503 (764)
Q Consensus 496 tLqR~cer 503 (764)
+|.+.+|+
T Consensus 137 ~Lk~~aE~ 144 (146)
T cd08860 137 RIKKKIEA 144 (146)
T ss_pred HHHHHhhh
Confidence 88877776
No 91
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.94 E-value=4.4 Score=37.65 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=64.4
Q ss_pred eeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCC
Q 004271 339 AGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSA 418 (764)
Q Consensus 339 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~ 418 (764)
+-.+...+.++.+.|.|.+.|.+-+|.+. -+++++.+ ...+ +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~~-------~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGPN-------EYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCCC-------eEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 44567788999999999999999999983 35555422 1211 111112 232 2233234555543344
Q ss_pred CcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhc
Q 004271 419 EQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVS 483 (764)
Q Consensus 419 g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~ 483 (764)
..+++.-..... ..+ ...=--+-+.+. +|.++|||.-+++..- .+..|..++++
T Consensus 72 ~~~~~~~~~~~~------~~~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~~ 125 (144)
T cd05018 72 ESYTITGEGKGG------AGF---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLID 125 (144)
T ss_pred cEEEEEEEEcCC------Cce---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHHH
Confidence 554444221110 000 011112346777 5679999999999653 34444555543
No 92
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=88.29 E-value=1.3 Score=42.76 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=53.6
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHh-CCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQL-GLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMRE 192 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~L-gLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e 192 (764)
.+|+.+++-.| . -.+|=+.| |++...|-.|=|.||+-.-|-........--.+.+.|..++..+..
T Consensus 22 d~lsDd~Lvsm------------S-VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSM------------S-VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHh------------h-HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788777655 1 22444444 8888888888898888665544433333333344455555555543
Q ss_pred HHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 004271 193 AINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 193 ~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~ 235 (764)
|..+|+.||++++.|++-..
T Consensus 89 -----------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 -----------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888876443
No 93
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=87.29 E-value=2.2 Score=44.36 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=71.7
Q ss_pred cceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEe-eeecCC-CcEEEEEEeccCcccc-ccCcccccccc
Q 004271 369 KAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRY-CKQLSA-EQWAIVDVSIDKVEEN-IDASLAKCRKR 445 (764)
Q Consensus 369 ~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRy-ckq~~~-g~w~VvDvS~d~~~~~-~~~~~~~~~~~ 445 (764)
.++.+++...+. ++...+.|.+..+|-| +..|+|..|.. +...+. ..++|+..+++.-.-- ....++|.+ -
T Consensus 76 ~~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y 149 (208)
T cd08864 76 DLEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-Y 149 (208)
T ss_pred eeEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-E
Confidence 346777766444 2356788888889988 89999999999 666652 6789999998643211 223577877 7
Q ss_pred CCceeeeeCCC---CeeEEEEEEeeeecccc-ccc
Q 004271 446 PSGCIVEDKSN---GHCKVTWVEHLECQKGT-VHT 476 (764)
Q Consensus 446 PSGclIq~~~n---G~skVtwVeH~e~d~~~-v~~ 476 (764)
=||..|+..|. +-.+|+|+==...|+.. ||.
T Consensus 150 ~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 150 ASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 89999998875 47899999944444542 543
No 94
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=87.15 E-value=1.3 Score=41.93 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=26.8
Q ss_pred ccCCHHHH-HHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccc
Q 004271 114 HRHTAEQI-REMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQN 159 (764)
Q Consensus 114 trfT~~Ql-~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQN 159 (764)
.+||.+.- +.+...+.. . ....++|+++|+++.++..|.+.
T Consensus 11 r~ys~EfK~~aV~~~~~~-g----~sv~evA~e~gIs~~tl~~W~r~ 52 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEP-G----MTVSLVARQHGVAASQLFLWRKQ 52 (121)
T ss_pred CCCCHHHHHHHHHHHHcC-C----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34666653 344444432 2 24568899999999999999543
No 95
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=86.11 E-value=15 Score=33.81 Aligned_cols=132 Identities=12% Similarity=0.169 Sum_probs=74.3
Q ss_pred ceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecC
Q 004271 338 DAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLS 417 (764)
Q Consensus 338 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~ 417 (764)
.+..|...+.++.+.|.|.+.|.+.+|.+ .-++++..+.. |.-...+ +.+ ...+.++.+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~----~~~~~~~--~~~--~~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDND----GRPEMVR--IGV--GAYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCC----CCEEEEE--EEE--eeeeEEEEEEEEEEEcC-
Confidence 45677888999999999999999999997 44556655442 2211122 222 12244555556765532
Q ss_pred CCc--EEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHH
Q 004271 418 AEQ--WAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMT 495 (764)
Q Consensus 418 ~g~--w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwla 495 (764)
... |-+.+.. .+.... .-.-+++.++ .|+|||.-+++..- . +...++..-.--+.+.-+.
T Consensus 73 ~~~i~~~~~~~~----------~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~ 134 (140)
T cd07819 73 AGSVSWTLVEGE----------GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-P---LPGFLKRKAEPLVLDEALK 134 (140)
T ss_pred CCcEEEEEeccc----------ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC-C---CCHHHHHHhhhHHHHHHHH
Confidence 222 2121110 011111 1255778877 49999999998743 2 3344444444445555555
Q ss_pred HHHHH
Q 004271 496 TLQLQ 500 (764)
Q Consensus 496 tLqR~ 500 (764)
.|.++
T Consensus 135 ~l~~~ 139 (140)
T cd07819 135 GLKKR 139 (140)
T ss_pred hHhhh
Confidence 55544
No 96
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=85.28 E-value=16 Score=33.41 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=70.5
Q ss_pred eEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCC
Q 004271 340 GVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAE 419 (764)
Q Consensus 340 g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g 419 (764)
..|...+..+-+.|.|.+.|.+-+|.+ ..+++...+. ..|+...++.-. . +.+. -+|.. +++.
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~~ 69 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDDA 69 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCcc
Confidence 457778889999999999999988876 4555554432 234432221110 0 1111 01111 1111
Q ss_pred cEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHH
Q 004271 420 QWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQL 499 (764)
Q Consensus 420 ~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR 499 (764)
.-.|. ..+... +. .+...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-...|+.|.+
T Consensus 70 ~~~i~-~~~~~~-~~------~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~~ 137 (140)
T cd07821 70 ERRYS-YRIVEG-PL------PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAALKA 137 (140)
T ss_pred CCEEE-EEecCC-CC------CcccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHHHH
Confidence 00011 011100 00 01111123557788887899999999887755 44455555555556666777766
Q ss_pred HHH
Q 004271 500 QCE 502 (764)
Q Consensus 500 ~ce 502 (764)
+||
T Consensus 138 ~~~ 140 (140)
T cd07821 138 ALE 140 (140)
T ss_pred hhC
Confidence 653
No 97
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.19 E-value=4.4 Score=36.05 Aligned_cols=58 Identities=29% Similarity=0.501 Sum_probs=42.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH----HHHhhhcC
Q 004271 167 IQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE----KLRAAVGK 240 (764)
Q Consensus 167 ~q~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~----r~~~~~~~ 240 (764)
++.-..-..|+-+.+.|+.+|..+.+.... +......|..||.+||+|.. |+++++++
T Consensus 14 qqAvdtI~LLqmEieELKekn~~L~~e~~~----------------~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQN----------------AQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444567888888899888888876654 22356679999999999985 77777665
No 98
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=83.14 E-value=14 Score=34.64 Aligned_cols=135 Identities=12% Similarity=0.126 Sum_probs=78.5
Q ss_pred ceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecC
Q 004271 338 DAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLS 417 (764)
Q Consensus 338 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~ 417 (764)
.+..|...+..+.+++-|.+.|.+.+|.+ .-.+++..+. ++ +.+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 34566777889999999999999999998 4555666443 22 22223333332 234443 343321 1
Q ss_pred CCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHH
Q 004271 418 AEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTL 497 (764)
Q Consensus 418 ~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatL 497 (764)
+..+ -=.++++. ...+=--..+++.++|.|+|+|.-|++..-. ++..|++.-+.=..++-|.++
T Consensus 68 -~~~i-~~~~~~g~----------~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~f 131 (138)
T cd07813 68 -PESI-EAELVDGP----------FKHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDAF 131 (138)
T ss_pred -CCEE-EEEecCCC----------hhhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3332 11122221 1112224557889999999999999998732 334444333334467778888
Q ss_pred HHHHHH
Q 004271 498 QLQCER 503 (764)
Q Consensus 498 qR~cer 503 (764)
.+.|++
T Consensus 132 ~~~~~~ 137 (138)
T cd07813 132 EKRAKQ 137 (138)
T ss_pred HHHHhh
Confidence 877765
No 99
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=82.87 E-value=14 Score=39.32 Aligned_cols=39 Identities=31% Similarity=0.281 Sum_probs=25.5
Q ss_pred cchhhHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHHHhc
Q 004271 158 QNRRTQIKTIQER--HENSLLKSEIEKLREENKAMREAINK 196 (764)
Q Consensus 158 QNRRak~Kr~q~r--~e~~~l~~e~~~l~~en~~l~e~~~~ 196 (764)
|+-|-|.|.+..+ .+-..|..+|++|+.||+.+++...+
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544333 34456788888888888888876654
No 100
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=82.09 E-value=2.2 Score=45.46 Aligned_cols=128 Identities=19% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeecc
Q 004271 547 SSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLA 626 (764)
Q Consensus 547 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 626 (764)
...++|..- ...++|+|-++.. +. +++-+.=+-+++|++.||++|.|.+.|.+||.... .++.+-.|
T Consensus 56 ~~~~~W~l~--~~~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~--e~~vIe~i- 122 (240)
T cd08913 56 VAKDNWVLS--SEKNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYR--SCELVQQV- 122 (240)
T ss_pred cccCCCEEE--EccCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhcc--EEEEEEec-
Confidence 456689854 2348999999553 11 12335556779999999999999999999996332 23444444
Q ss_pred cCCCCCCeEEEEeee--c-----cCCCeEEEEeeecCC-cc-eEEE-EcccccccccccccCCCCCCc--cccCCccEEc
Q 004271 627 KGQDRGNAVNIQTMK--S-----KENSMWLLQDSYTNA-YE-SMVV-YAPVDITGMQSVITGCDSSNI--AILPSGFSIL 694 (764)
Q Consensus 627 ~g~~~gn~vsllr~~--~-----~~~~~liLQes~td~-sg-s~vV-yAPvD~~~m~~vm~G~Ds~~v--~lLPSGF~I~ 694 (764)
+..++ +.+.. + .++++.++.-.--+. .| .++| .--+..+.+ ...+.+| .-+..||.|.
T Consensus 123 ---d~~~~--vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~-----Pp~kgyVR~~~~~ggw~i~ 192 (240)
T cd08913 123 ---DEDDA--IYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTH-----PPTPEYTRGETLCSGFCIW 192 (240)
T ss_pred ---CCCcE--EEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCC-----CCCCCcEEeeecccEEEEE
Confidence 22333 34433 1 237777774421221 22 2222 111222221 1123333 3577888888
Q ss_pred cCC
Q 004271 695 PDG 697 (764)
Q Consensus 695 Pdg 697 (764)
|.+
T Consensus 193 p~~ 195 (240)
T cd08913 193 EES 195 (240)
T ss_pred ECC
Confidence 865
No 101
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.01 E-value=6.3 Score=34.32 Aligned_cols=55 Identities=35% Similarity=0.562 Sum_probs=38.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH----HHHhhhcCC
Q 004271 171 HENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE----KLRAAVGKC 241 (764)
Q Consensus 171 ~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~----r~~~~~~~~ 241 (764)
..-..|+-+.+.|+++|..+..+..+ .+.....|..||..||+|.. |+.++++|+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~----------------~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQN----------------AQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33455777788888888777665543 23355678999999999974 788877663
No 102
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.73 E-value=6.3 Score=34.54 Aligned_cols=46 Identities=39% Similarity=0.635 Sum_probs=33.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH----HHHhhhc
Q 004271 171 HENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE----KLRAAVG 239 (764)
Q Consensus 171 ~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~----r~~~~~~ 239 (764)
.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++++
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~-----------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKE-----------------------ENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677888888888877774 66779999999998876 4555544
No 103
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=80.14 E-value=15 Score=33.57 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=28.6
Q ss_pred eeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEee
Q 004271 339 AGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVIC 377 (764)
Q Consensus 339 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis 377 (764)
+..|...+.++-+.|.|...|.+-+|.+ ..++.++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4467788999999999999999999987 5666666
No 104
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=80.02 E-value=22 Score=33.19 Aligned_cols=137 Identities=9% Similarity=-0.012 Sum_probs=67.2
Q ss_pred eeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCC
Q 004271 339 AGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSA 418 (764)
Q Consensus 339 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~ 418 (764)
+.+|...+..+-++|.|.++|-+.+|+ ..+. ++..+. ++.. ++. ....+.--...+...+++ -.+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~--~~~~---~~~~~~----~~~~--~~~--~~~~~~g~~~~~~~~~~~--~~~ 68 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT--VHVE---RLELDG----GVER--LRM--WATAFDGSVHTWTSRRVL--DPE 68 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC--ceEE---EEEEcC----CEEE--EEE--EEEcCCCcEEEEEEEEEE--cCC
Confidence 456677889999999999999998886 2333 333321 2221 111 111111111222222222 222
Q ss_pred CcEE-EEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHH
Q 004271 419 EQWA-IVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTL 497 (764)
Q Consensus 419 g~w~-VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatL 497 (764)
+..+ ...+...+.. ...=.=..+++.++|.|+|||.-+++.... ++ +.-+++..-+.=--.+.|+.|
T Consensus 69 ~~~i~~~~~~~~~~~----------~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~l 136 (142)
T cd08861 69 GRRIVFRQEEPPPPV----------ASMSGEWRFEPLGGGGTRVTLRHDFTLGID-SP-EAVPWIRRALDRNSRAELAAL 136 (142)
T ss_pred CCEEEEEEeeCCCCh----------hhheeEEEEEECCCCcEEEEEEEEEEECCC-Cc-hhHHHHHHHHccccHHHHHHH
Confidence 3321 1111111110 011112345777778899999999997733 22 333333333333345666666
Q ss_pred HHHHH
Q 004271 498 QLQCE 502 (764)
Q Consensus 498 qR~ce 502 (764)
.+++|
T Consensus 137 k~~~E 141 (142)
T cd08861 137 RAAAE 141 (142)
T ss_pred HHHhh
Confidence 66655
No 105
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=79.94 E-value=0.95 Score=54.12 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=44.9
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 121 IREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 121 l~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
+..|...|..|..|+..+...+|.+.||+.+.||.||++++++..+.++
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~r 616 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVER 616 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhcc
Confidence 7788889999999999999999999999999999999999998876543
No 106
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=79.84 E-value=1.6 Score=35.74 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=34.4
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchh
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRR 161 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRR 161 (764)
||+|..+|-+|-..+-..++..+ ...+||+++|++..+|..|..|+.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhHH
Confidence 35667899988888878887765 577999999999999999988753
No 107
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=79.15 E-value=35 Score=31.42 Aligned_cols=134 Identities=10% Similarity=0.062 Sum_probs=72.5
Q ss_pred eeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCC
Q 004271 339 AGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSA 418 (764)
Q Consensus 339 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~ 418 (764)
+..|...+..+-++|.|.+.|.+-+|.+ .-+++++.+ +. ++.+-.|....+++ ..+++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~~------~~------~~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDDT------RS------HWKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCCC------ce------EEEEecCCCCcEEE-EEEEec-cCC
Confidence 4455667889999999999999999987 344554321 11 11112232333433 345544 344
Q ss_pred CcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHH
Q 004271 419 EQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQ 498 (764)
Q Consensus 419 g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLq 498 (764)
+..++.. ..++.. ......+ +++.++|.++||+--|.+......-.++-+++..-+-=..+.+|..|.
T Consensus 67 ~~~i~~~-~~~~~~-----~~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 134 (139)
T cd07817 67 NERIAWR-SVEGAD-----PNAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFK 134 (139)
T ss_pred CCEEEEE-ECCCCC-----CcceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 4443222 222211 1111112 467777789999999988775333334444444433344556666666
Q ss_pred HHHH
Q 004271 499 LQCE 502 (764)
Q Consensus 499 R~ce 502 (764)
+++|
T Consensus 135 ~~aE 138 (139)
T cd07817 135 QLVE 138 (139)
T ss_pred HHhh
Confidence 5554
No 108
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=79.01 E-value=7.8 Score=47.06 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=83.9
Q ss_pred CCCCCceeeecCCCCcEEEEEccC-CCCCCCCCceEEEEEEeeecccChhHHHHhhhccc-ccchhhhhc-CCCccceee
Q 004271 547 SSYHVWNKVTSKTGEDIRVSSRKN-LNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEA-HRNEWDIMS-NGGPVQTIA 623 (764)
Q Consensus 547 s~~~~W~~l~~~~~~dvrv~~r~~-~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~-~R~eWd~l~-~g~~vqe~~ 623 (764)
+....|.-+... .++||.-.-. .+..+...+-++ ++-=-++.+|+.||++|-+.. .|.|||... .|.-++++
T Consensus 195 ~~~~~Wr~~~c~--NGlRiF~e~~~~~~~~~~~~~~m--KavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I- 269 (719)
T PLN00188 195 FSRKHWRLLQCQ--NGLRIFEELLEVDYLPRSCSRAM--KAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV- 269 (719)
T ss_pred cccCCeEEEEee--ccceeehhhhccccccccCCcee--EEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEe-
Confidence 555667665332 3566654332 121122222232 233346789999999997444 999999643 33333333
Q ss_pred ecccCCCCCCeEEEEeeec------c-CCCeEEEEeeecCCcceEEE-EcccccccccccccCCCCCCc--cccCCccEE
Q 004271 624 NLAKGQDRGNAVNIQTMKS------K-ENSMWLLQDSYTNAYESMVV-YAPVDITGMQSVITGCDSSNI--AILPSGFSI 693 (764)
Q Consensus 624 ~ia~g~~~gn~vsllr~~~------~-~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~Ds~~v--~lLPSGF~I 693 (764)
+...+|.-.++.. . .++..++.--.-+.-|+|++ |-+|.-+.-- -=+.+| -+-|+||.|
T Consensus 270 ------D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cP-----P~kG~VRg~~~pGGwiI 338 (719)
T PLN00188 270 ------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCG-----PQPGFVRAHLESGGFNI 338 (719)
T ss_pred ------cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCC-----CCCCeEEEEEeCCEEEE
Confidence 4444555334431 1 26666766645556777765 4444443310 002222 367999999
Q ss_pred ccCCCCCCCCccCCcccccccCCCceEEEeeeeecc
Q 004271 694 LPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTN 729 (764)
Q Consensus 694 ~Pdg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 729 (764)
.|.-.. +...+|+||--+|+=..
T Consensus 339 sPL~~~-------------~g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 339 SPLKPR-------------NGRPRTQVQHLMQIDLK 361 (719)
T ss_pred EECCCC-------------CCCCceEEEEEEEEccC
Confidence 996521 11257888887777543
No 109
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=78.54 E-value=20 Score=33.14 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=24.9
Q ss_pred EEeeecccChhHHHHhhhcccccchhhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
..++-++.||+.||+||.|.....+|.-
T Consensus 4 ~~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 4 SGEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eeEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 3567789999999999999999999983
No 110
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=77.22 E-value=4.1 Score=44.32 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH
Q 004271 173 NSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE 232 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~ 232 (764)
...+++||++|+.|+..+++++.. ..+.|+.||++||+.|.
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~-------------------~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEI-------------------LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhc
Confidence 345677777777777766554433 33347788888887665
No 111
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=76.82 E-value=44 Score=35.42 Aligned_cols=97 Identities=14% Similarity=0.261 Sum_probs=60.8
Q ss_pred hcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEE-EEEEeeecc-cChhHHHHhhhcccccchhhhhcCCCccce
Q 004271 544 IGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVIL-CAVSSVWLP-VSPNVLFDFLRDEAHRNEWDIMSNGGPVQT 621 (764)
Q Consensus 544 v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl-~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe 621 (764)
.-+-..++|.... .-++|+|-+|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-... +..
T Consensus 20 ~~~~~~~~W~l~~--~~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~--~~v 90 (235)
T cd08872 20 LEDVGADGWQLFA--EEGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLEN--FHV 90 (235)
T ss_pred HccCCCCCCEEEE--eCCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhhe--eEE
Confidence 3344556898663 33789999987632 2 2332 356777789 9999999999999999999963321 233
Q ss_pred eeecccCCCCCCeEEEEeeec----cCCCeEEEEee
Q 004271 622 IANLAKGQDRGNAVNIQTMKS----KENSMWLLQDS 653 (764)
Q Consensus 622 ~~~ia~g~~~gn~vsllr~~~----~~~~~liLQes 653 (764)
+-+| ++.+.|--...+. .++++.++.-.
T Consensus 91 ie~l----~~~~~I~Y~~~k~PwPvs~RD~V~~~~~ 122 (235)
T cd08872 91 VETL----SQDTLIFHQTHKRVWPAAQRDALFVSHI 122 (235)
T ss_pred EEec----CCCCEEEEEEccCCCCCCCcEEEEEEEE
Confidence 3343 2344433333332 34777776553
No 112
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.58 E-value=6.5 Score=31.40 Aligned_cols=41 Identities=32% Similarity=0.517 Sum_probs=28.6
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Q 004271 168 QERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAV 238 (764)
Q Consensus 168 q~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~~ 238 (764)
|.+.+...|++.++.|++++. .|..||+.|+.|+..+...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~------------------------------~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYD------------------------------SLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHhh
Confidence 345667778888888887654 46677777777777776543
No 113
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=74.76 E-value=40 Score=30.64 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=71.8
Q ss_pred eeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCC
Q 004271 339 AGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSA 418 (764)
Q Consensus 339 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~ 418 (764)
+..|...+.++-++|.|.++|.+-.|.+ ..+++++.+. ...|+.-.+...+ -+.+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~--~~~g~~~~~~~~~------~g~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGP--VGVGTRYHQVRKF------LGRRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCC--CcCccEEEEEEEe------cCceEEEEEEEEEecCC
Confidence 4456678889999999999999999987 5566665442 2234332221111 11111123344432222
Q ss_pred CcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHH
Q 004271 419 EQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQ 498 (764)
Q Consensus 419 g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLq 498 (764)
..+. ... ..+ +. ... .=.-+++.++| |+|+|-.+++. ..+-.++.+++...+.=+-++++..|.
T Consensus 72 ~~~~-~~~-~~~----~~-~~~------~~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk 135 (140)
T cd08865 72 RRVV-FRG-SSG----PF-PYE------DTYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENLK 135 (140)
T ss_pred cEEE-EEe-cCC----Cc-ceE------EEEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2221 111 110 00 000 01335677665 99999998876 333345555555555555566666666
Q ss_pred HHHH
Q 004271 499 LQCE 502 (764)
Q Consensus 499 R~ce 502 (764)
+.+|
T Consensus 136 ~~~e 139 (140)
T cd08865 136 ALLE 139 (140)
T ss_pred HHhh
Confidence 5554
No 114
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=71.95 E-value=24 Score=32.24 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=35.3
Q ss_pred eeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 004271 449 CIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502 (764)
Q Consensus 449 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ce 502 (764)
+.+.+.+.|.|+|+|..... .....++..++...+.=+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767789999864222 1122345666777788888899999998886
No 115
>PRK10724 hypothetical protein; Provisional
Probab=67.89 E-value=1.1e+02 Score=30.57 Aligned_cols=137 Identities=12% Similarity=0.163 Sum_probs=81.0
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeec
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQL 416 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~ 416 (764)
+.+.+|.-.+..+.+.+.|.++|-+.+|-. .-.+|+.... ++ +.+++.+--.-+ ++-+.-|+.-.
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~----~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGC----TGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCccc----CeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 456788889999999999999999999987 3344455433 22 456665533332 34333343332
Q ss_pred CCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHH
Q 004271 417 SAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTT 496 (764)
Q Consensus 417 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlat 496 (764)
.++ .+.+ ..+++ + .+.+=.-.-+++.++|.|+|+.--+.|+.. .||.+++...+-=.|++=+.+
T Consensus 83 ~~~-~I~~-~~~~G----p------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~~~~~~~~~~~mv~A 146 (158)
T PRK10724 83 SNQ-SILM-QLVDG----P------FKKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAFGRVFKELASNMVQA 146 (158)
T ss_pred CCC-EEEE-EecCC----C------hhhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHHHHHHHHHHHHHHHH
Confidence 333 3322 22222 2 233334445678887789999988888653 344455544444455666666
Q ss_pred HHHHHHHH
Q 004271 497 LQLQCERL 504 (764)
Q Consensus 497 LqR~cerl 504 (764)
..+-|+.+
T Consensus 147 F~~Ra~~~ 154 (158)
T PRK10724 147 FTVRAKEV 154 (158)
T ss_pred HHHHHHHH
Confidence 66555543
No 116
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.58 E-value=22 Score=28.42 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=16.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 004271 170 RHENSLLKSEIEKLREENKAMREAI 194 (764)
Q Consensus 170 r~e~~~l~~e~~~l~~en~~l~e~~ 194 (764)
+.....|+.+|+.|..||..++..+
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777776665543
No 117
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=66.70 E-value=58 Score=30.69 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=31.8
Q ss_pred eeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 004271 451 VEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCE 502 (764)
Q Consensus 451 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~ce 502 (764)
+++. +|.|+|+|..+.++.-.....++.+++...+.=...+.|..|.+++|
T Consensus 99 ~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45699999999887755444455555544444344555666665554
No 118
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=64.45 E-value=0.73 Score=39.28 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeeccc
Q 004271 111 KKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQ 158 (764)
Q Consensus 111 r~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQ 158 (764)
++|.+||+++-..+-..+.. ......++|+++|+++.++..|-+
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~gi~~~~l~~W~~ 45 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREYGISPSTLYNWRK 45 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeecccccccccccHHHH
Confidence 34568899887777666511 235678999999999999988853
No 119
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=60.17 E-value=1.4e+02 Score=28.32 Aligned_cols=133 Identities=11% Similarity=0.095 Sum_probs=70.4
Q ss_pred EEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecCCCc
Q 004271 341 VVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQ 420 (764)
Q Consensus 341 ~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~~g~ 420 (764)
.+...+.++-+++.|.++|-+-.|.+ ..+.+++.|.....+...+ +.. ....|.+.-+..|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~-~~~-----~~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRR-YTW-----RGLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEE-EEE-----EecCCcEEEEEEEEEeecCCcE
Confidence 45557889999999999999999987 6666776322112222222 110 1112322333345544444445
Q ss_pred EEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccc---cccccchhhhcchhhHHHHHHHHHH
Q 004271 421 WAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKG---TVHTMYRSIVSSGLAFGARHWMTTL 497 (764)
Q Consensus 421 w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~---~v~~l~rpl~~sg~afgA~rwlatL 497 (764)
|++. . ++... ... -.-|++.++| |+||+-.+++..-- ..+.++.+++....-=..+.-+..|
T Consensus 78 ~~~~-~--~g~~~----~~~-------~~~~~~~~~g-t~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L 142 (146)
T cd07824 78 LEVR-A--SGDLE----GVG-------RWTLAPDGSG-TVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGL 142 (146)
T ss_pred EEEE-E--EEeee----EEE-------EEEEEEcCCC-EEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHH
Confidence 5442 2 21100 011 1236665554 99999888887542 3556666666444333333444444
Q ss_pred H
Q 004271 498 Q 498 (764)
Q Consensus 498 q 498 (764)
.
T Consensus 143 ~ 143 (146)
T cd07824 143 A 143 (146)
T ss_pred H
Confidence 3
No 120
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=59.47 E-value=16 Score=39.19 Aligned_cols=40 Identities=33% Similarity=0.379 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH
Q 004271 173 NSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE 232 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~ 232 (764)
...+++||++|++|+..++..+. +.+.|+.||.+||+.++
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~--------------------~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ--------------------ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhc
Confidence 44566666666666666554332 23456667776666544
No 121
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.89 E-value=28 Score=40.63 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=15.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 004271 169 ERHENSLLKSEIEKLREENKAMREAINK 196 (764)
Q Consensus 169 ~r~e~~~l~~e~~~l~~en~~l~e~~~~ 196 (764)
...+|+.|++||++|+.....+.+.++.
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455666666666666655554444443
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=55.61 E-value=54 Score=27.56 Aligned_cols=39 Identities=33% Similarity=0.522 Sum_probs=26.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHH
Q 004271 170 RHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEV 231 (764)
Q Consensus 170 r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~ 231 (764)
+.....|..+...|..+|..|+. +..+|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~-----------------------~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKK-----------------------EIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHh
Confidence 44455677777777777777765 4555777777777765
No 123
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=54.47 E-value=96 Score=28.12 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=47.2
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 004271 162 TQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRA 236 (764)
Q Consensus 162 ak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~ 236 (764)
.+.+|...+++-..|+.+.++-..-+..+..++....++-+..|. ++.+..+.|..|-+.|..|+.++-.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~-----~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPS-----SLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccc-----cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777666666777777665544333322 3455888899999999999877643
No 124
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=53.48 E-value=52 Score=29.99 Aligned_cols=47 Identities=32% Similarity=0.526 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Q 004271 175 LLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAV 238 (764)
Q Consensus 175 ~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~~ 238 (764)
.+..++..|+.|.+.+++.+.+ . .+.-+...||-+|++|+.|+..+-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~---------------n--Pevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEH---------------N--PEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh---------------C--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788888888877654 1 278889999999999999987653
No 125
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=53.24 E-value=8.1 Score=49.52 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=53.9
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
.+-.+++++.-|...|-.+|+...||.-.++..++.-|++..|.+-.||+++++++.....
T Consensus 444 ~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~ 504 (1406)
T KOG1146|consen 444 PLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHP 504 (1406)
T ss_pred hhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccc
Confidence 3456778899999999999999999999999999999999999999999998888875443
No 126
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=51.19 E-value=36 Score=37.31 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=32.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH
Q 004271 166 TIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE 232 (764)
Q Consensus 166 r~q~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~ 232 (764)
|+++|.+.+.+..|.+.|..+|.+||+ +.++|..|-.+||+-+-
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~-----------------------qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKD-----------------------QASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHH
Confidence 344566777888888888888888887 56667778888887654
No 127
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.89 E-value=85 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=14.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 004271 170 RHENSLLKSEIEKLREENKAMRE 192 (764)
Q Consensus 170 r~e~~~l~~e~~~l~~en~~l~e 192 (764)
......|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777666664
No 128
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=49.97 E-value=1.7e+02 Score=25.42 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=27.8
Q ss_pred eeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeC
Q 004271 339 AGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICG 378 (764)
Q Consensus 339 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~ 378 (764)
...|...+..+-+.|.|...|..-+|.+ ....++..
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~----~~~~~~~~ 39 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL----ERVEVLGG 39 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc----ceEEEcCC
Confidence 4456667899999999999999999887 44455543
No 129
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.17 E-value=57 Score=40.80 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 004271 176 LKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAA 237 (764)
Q Consensus 176 l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~ 237 (764)
++..++.|.-+.+.+++++.+- |+ ...+..+. |-.||..+|+|||+-+-|+..+
T Consensus 337 lkEr~deletdlEILKaEmeek-----G~-~~~~~ss~--qfkqlEqqN~rLKdalVrLRDl 390 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEK-----GS-DGQAASSY--QFKQLEQQNARLKDALVRLRDL 390 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CC-CCcccchH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555666677777773 33 33333344 8999999999999999988765
No 130
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=47.55 E-value=62 Score=35.13 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004271 216 EEQQLRIENARLKAEVEKLRAAVGKC 241 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~~~~~~~ 241 (764)
|.+.|+.+..+|++|+..+..+...+
T Consensus 230 en~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 230 ENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666667777777777776665443
No 131
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.74 E-value=2e+02 Score=35.47 Aligned_cols=19 Identities=42% Similarity=0.770 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004271 176 LKSEIEKLREENKAMREAI 194 (764)
Q Consensus 176 l~~e~~~l~~en~~l~e~~ 194 (764)
++.+...++.||+.++..+
T Consensus 458 lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 132
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=45.88 E-value=29 Score=38.58 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=22.5
Q ss_pred ceEEEEcccccccccccccCC--CCCCccccCCccEEccCCC
Q 004271 659 ESMVVYAPVDITGMQSVITGC--DSSNIAILPSGFSILPDGL 698 (764)
Q Consensus 659 gs~vVyAPvD~~~m~~vm~G~--Ds~~v~lLPSGF~I~Pdg~ 698 (764)
.+++|.-||-.+.- -.|.-. -+=+|-.=|-|.-|-|-|.
T Consensus 335 ~~~~isg~v~~sit-~l~~~~~l~~~~i~f~~~g~~v~~~g~ 375 (420)
T PF07407_consen 335 EDYFISGPVGPSIT-CLMKTYALYSVEIVFGEKGLYVRPTGS 375 (420)
T ss_pred cCceEeccccchHH-HHHHHhhhheeEEEEcCCceEEeccCC
Confidence 46677777665432 222211 3446667788888888764
No 133
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=45.07 E-value=10 Score=36.21 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.7
Q ss_pred EeeecccChhHHHHhhhcccccchhh
Q 004271 586 SSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 586 tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
-++.+|.||++||+||.|.+...+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999885
No 134
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=44.81 E-value=88 Score=29.74 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004271 216 EEQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~ 235 (764)
|..+|++||..||+.++++.
T Consensus 37 EN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 37 ENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56678888888888887663
No 135
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.30 E-value=77 Score=29.88 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004271 216 EEQQLRIENARLKAEVEKLRA 236 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~~ 236 (764)
|...|++||..||+.+.++..
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 556677777777777776554
No 136
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.31 E-value=66 Score=37.14 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhcCCCCceEE
Q 004271 281 VNQGMEELKKMATAGGPLWIR 301 (764)
Q Consensus 281 A~~Am~El~~la~~~eplWi~ 301 (764)
|..||.|+-...+..---|.+
T Consensus 402 ak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 402 AKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665555555654
No 137
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=41.34 E-value=77 Score=37.54 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004271 216 EEQQLRIENARLKAEVEKLRA 236 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~~ 236 (764)
|.++|+.||+-||++|+-+..
T Consensus 317 Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHhhhHHHHHHHHHHhh
Confidence 788999999999999986553
No 138
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=41.12 E-value=20 Score=32.95 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=26.4
Q ss_pred EEEeeecccChhHHHHhhhcccccchhhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
...|+.++.||..||++|.|.....+|.-
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 45789999999999999999999999984
No 139
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=40.78 E-value=18 Score=33.02 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.5
Q ss_pred EEeeecccChhHHHHhhhcccccchhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
..++-++.||..||++|.|-.+..+|.
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~ 28 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWD 28 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhc
Confidence 357778999999999999999999997
No 140
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=40.17 E-value=27 Score=31.93 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=23.8
Q ss_pred EEEeeecccChhHHHHhhhcccccchhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
...++-++.||+.||++|.|.....+|.
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~~~~w~ 31 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPENWPRWW 31 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTGGGGTS
T ss_pred EEEEEEECCCHHHHHHHHhChhhhhhhh
Confidence 3467788999999999999999999997
No 141
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.59 E-value=1.4e+02 Score=35.23 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=28.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHH
Q 004271 169 ERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEK 233 (764)
Q Consensus 169 ~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r 233 (764)
.....+.+++++++++.|...+...... +....+.|..||++|+++++.
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~d----------------le~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGD----------------DQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh----------------HHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777777777666533322222 112445677888888888853
No 142
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=38.38 E-value=1.9e+02 Score=33.96 Aligned_cols=91 Identities=23% Similarity=0.305 Sum_probs=53.8
Q ss_pred cccCCHHHHHHHHHh-h-hcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhhhhhhHHHH--------HH
Q 004271 113 YHRHTAEQIREMEAL-F-KESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEI--------EK 182 (764)
Q Consensus 113 RtrfT~~Ql~~LE~~-F-~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~--------~~ 182 (764)
--++|.+....|.+. + --..+|-.+.-++.-++. |.|.|+++-.+|..+.+++| ..
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv--------------RRKIrNK~SAQESRrkKkeYid~LE~rv~~ 283 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV--------------RRKIRNKRSAQESRRKKKEYIDGLESRVSA 283 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH--------------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhh
Confidence 345777777777665 2 333456666555555444 33444433333333333333 33
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004271 183 LREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK 240 (764)
Q Consensus 183 l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~~~~ 240 (764)
..+||.+|+ ++.++|..+|.-|-++|.++.+....
T Consensus 284 ~taeNqeL~-----------------------kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 284 FTAENQELQ-----------------------KKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred cccCcHHHH-----------------------HHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 444454444 48889999999999999998876543
No 143
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.76 E-value=91 Score=33.18 Aligned_cols=43 Identities=33% Similarity=0.529 Sum_probs=26.2
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 004271 169 ERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKL 234 (764)
Q Consensus 169 ~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~ 234 (764)
...++..|..+++.+.++-.+.++.+ ..|+.||++|.+++.++
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erl-----------------------k~le~E~s~LeE~~~~l 189 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERL-----------------------KRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhc
Confidence 34455556666666666666666544 44777777777666544
No 144
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=37.57 E-value=25 Score=32.09 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=24.5
Q ss_pred EEeeecccChhHHHHhhhcccccchhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 357789999999999999999999997
No 145
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.26 E-value=23 Score=33.18 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.7
Q ss_pred EEeeecccChhHHHHhhhcccccchhhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
.+++.++.||..||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 3689999999999999999999999983
No 146
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=35.88 E-value=95 Score=34.00 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=10.3
Q ss_pred CCceeeeeceeEEEe
Q 004271 330 NRSIEASRDAGVVFV 344 (764)
Q Consensus 330 g~~~EAsR~~g~V~~ 344 (764)
|-.++.++-++-|.+
T Consensus 158 G~V~~V~~~tS~V~L 172 (284)
T COG1792 158 GKVVEVSKNTSRVLL 172 (284)
T ss_pred EEEEEEcCceeEEEE
Confidence 456677777777766
No 147
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=35.81 E-value=23 Score=33.50 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=25.6
Q ss_pred EEEeeecccChhHHHHhhhcccccchh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEW 610 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eW 610 (764)
|.+++.++.||++||+.|-|+++-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 148
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=35.68 E-value=28 Score=32.06 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=26.4
Q ss_pred EEEEeeecccChhHHHHhhhcccccchhhh
Q 004271 583 CAVSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 583 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
+...++-++.||..||+++.|.+...+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345788899999999999999999999983
No 149
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.91 E-value=27 Score=32.15 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEeeecccChhHHHHhhhcccccchhhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999984
No 150
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=34.59 E-value=88 Score=34.18 Aligned_cols=45 Identities=31% Similarity=0.400 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhhhc
Q 004271 176 LKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVG 239 (764)
Q Consensus 176 l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~~~ 239 (764)
.-.....+++||++|++++.. -.+++....+.|++|.+||..++.
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~-------------------l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLK-------------------KNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667889999999987754 235555555669999999998765
No 151
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.26 E-value=31 Score=32.27 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.0
Q ss_pred EEeeecccChhHHHHhhhcccccchhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
..+.-++.||++||++|-|..+..+|.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccccceeC
Confidence 356667899999999999999999997
No 152
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.88 E-value=49 Score=33.60 Aligned_cols=19 Identities=47% Similarity=0.637 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004271 216 EEQQLRIENARLKAEVEKL 234 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~ 234 (764)
|+..|++|++|||||+.-|
T Consensus 25 EKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666667777776666543
No 153
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.51 E-value=4.2e+02 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=25.3
Q ss_pred ceeEEEeChhhHHHHhcChhhHhhhcccc
Q 004271 338 DAGVVFVDLPKLVQSFTDVNQWKAMFPCL 366 (764)
Q Consensus 338 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 366 (764)
.+-.|...+..+-+.|.|.+.|.+-+|.+
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~ 31 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGA 31 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCc
Confidence 34567788999999999999999999986
No 154
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=33.49 E-value=14 Score=28.03 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhh
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRT 162 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRa 162 (764)
..+++.+...++..|... ..-.++|.++|+++..|+.|.+..+.
T Consensus 9 ~~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 9 DKLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRALK 52 (55)
T ss_pred HhCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356788888888877422 34668899999999999888755443
No 155
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=33.21 E-value=25 Score=32.35 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=24.5
Q ss_pred EEeeecccChhHHHHhhhcccccchhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
..|+-++.||+.||++|.|..+-++|.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~ 29 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWF 29 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhh
Confidence 357788999999999999999999996
No 156
>smart00340 HALZ homeobox associated leucin zipper.
Probab=32.53 E-value=53 Score=26.12 Aligned_cols=21 Identities=48% Similarity=0.578 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004271 217 EQQLRIENARLKAEVEKLRAA 237 (764)
Q Consensus 217 ~~~L~~EN~~Lk~E~~r~~~~ 237 (764)
...|..||.||+.|++.+.++
T Consensus 14 ce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 14 CESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456888899999999988864
No 157
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.06 E-value=89 Score=29.42 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.7
Q ss_pred EEEeeecccChhHHHHhhhcccccchhhhhc
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWDIMS 614 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~ 614 (764)
...|+-++.||++||+++.|.+...+|.-.+
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 3567788999999999999999999998543
No 158
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.86 E-value=31 Score=30.27 Aligned_cols=26 Identities=31% Similarity=0.745 Sum_probs=23.5
Q ss_pred EeeecccChhHHHHhhhcccccchhh
Q 004271 586 SSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 586 tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
.++-++.||..||++|.|..+..+|.
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~ 28 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWS 28 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhC
Confidence 46778899999999999999999996
No 159
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=31.57 E-value=27 Score=27.57 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecc
Q 004271 115 RHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWF 157 (764)
Q Consensus 115 rfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWF 157 (764)
.+++.|.+.|...|-. ...-.++|..+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~-----~~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFE-----GLTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTS-----T-SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcC-----CCCHHHHHHHHCCcHHHHHHHH
Confidence 5788999999999932 2346789999999998887554
No 160
>PHA03162 hypothetical protein; Provisional
Probab=31.21 E-value=1.7e+02 Score=28.72 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=31.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHH
Q 004271 171 HENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQ 219 (764)
Q Consensus 171 ~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~ 219 (764)
.....|.++..+|+-||+.|+..++...-+ +..+++..++..+.+
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~----~~~p~d~~LTp~qKe 57 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDD----DPLPGDPILTPAAKE 57 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCC----CCCCCCccCCHHHHH
Confidence 345678899999999999999999764422 345566666544444
No 161
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=30.67 E-value=50 Score=27.30 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhhhcCCC--CCHHHHHHHHHHhCCCcce
Q 004271 116 HTAEQIREMEALFKESPH--PDEKQRQQLSKQLGLAPRQ 152 (764)
Q Consensus 116 fT~~Ql~~LE~~F~~~~y--P~~~~R~eLA~~LgLserQ 152 (764)
+|+.|.+.|...|..--| |-...-.+||+++|+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 588999999999977554 5555688999999998744
No 162
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.01 E-value=1.6e+02 Score=31.19 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=6.8
Q ss_pred HHHhh--hcCCCCCHH
Q 004271 124 MEALF--KESPHPDEK 137 (764)
Q Consensus 124 LE~~F--~~~~yP~~~ 137 (764)
++..| +++.|.+..
T Consensus 90 ~~~l~raqrn~YisGf 105 (216)
T KOG1962|consen 90 LEALFRAQRNLYISGF 105 (216)
T ss_pred HHHHHHHHhhhHHhHH
Confidence 34444 444566654
No 163
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=29.48 E-value=50 Score=33.69 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=22.2
Q ss_pred cCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH
Q 004271 197 ACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE 232 (764)
Q Consensus 197 ~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~ 232 (764)
-.||.||++....+.+- ..+.|...-.+|++++.
T Consensus 137 F~Cp~Cg~~L~~~dn~~--~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 137 FRCPQCGEMLEEYDNSE--LIKELKEQIKELEEELK 170 (178)
T ss_pred CcCCCCCCCCeecccHH--HHHHHHHHHHHHHHHhc
Confidence 34889998887766543 55556666666666655
No 164
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=29.43 E-value=1.1e+02 Score=26.05 Aligned_cols=56 Identities=21% Similarity=0.434 Sum_probs=42.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 004271 172 ENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAA 237 (764)
Q Consensus 172 e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~ 237 (764)
+....+-....|++|...+..+++..+-..|.. + +.|+++...--||+++.++...
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~~~cD~--------L--~iqRmKkKKLAlKDki~~lED~ 60 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIATGCDA--------L--RIQRMKKKKLALKDKITKLEDQ 60 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCcH--------H--HHHHHHHHHHhHHHHHHHHHHh
Confidence 344566777888888888888888777777753 4 7778888888889999887653
No 165
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=28.52 E-value=1e+02 Score=34.70 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 004271 173 NSLLKSEIEKLREENKAMREAI 194 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~ 194 (764)
...+++||++|++||..+++.+
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776655
No 166
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.46 E-value=64 Score=30.18 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred eEeecccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 004271 152 QVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINK 196 (764)
Q Consensus 152 QVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e~~~~ 196 (764)
+...||.+ ..-.+-.+.+++...+++++++++++|..|++.+..
T Consensus 16 ~y~l~~g~-~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 16 QYSLWFGK-NGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 167
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.27 E-value=47 Score=30.29 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=23.8
Q ss_pred EeeecccChhHHHHhhhcccccchhh
Q 004271 586 SSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 586 tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
.+.-++.||+.||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~ 29 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWN 29 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccC
Confidence 46678899999999999999999998
No 168
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.92 E-value=2.6e+02 Score=33.57 Aligned_cols=90 Identities=26% Similarity=0.362 Sum_probs=60.8
Q ss_pred cchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 004271 158 QNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAA 237 (764)
Q Consensus 158 QNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~ 237 (764)
|.+|.|.--+..+-...++-++|..|.+||..+++...+. .+... |..-|+.|+.||.+|.+-+...
T Consensus 150 qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~L-----------R~sQV--EyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 150 QRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNL-----------RQSQV--EYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-----------hhhhh--hhhHHHHHHHHHHHHHHHHHHH
Confidence 4455554444444445677888999999999888876541 11112 5667888888988888866543
Q ss_pred hcCCCCCCCCCCcCCCCCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHHHHhhc
Q 004271 238 VGKCPPGATSTSSCSAGNDQENRSSLDFYTGIFGIDKSRIMELVNQGMEELKKMAT 293 (764)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~Am~El~~la~ 293 (764)
+. |-..+-+||+.-|+|-+.-++
T Consensus 217 ~e---------------------------------e~~~Lk~IAekQlEEALeTlq 239 (772)
T KOG0999|consen 217 LE---------------------------------EAIRLKEIAEKQLEEALETLQ 239 (772)
T ss_pred HH---------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 22 357888999999999665544
No 169
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.00 E-value=1.9e+02 Score=30.36 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH
Q 004271 176 LKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE 232 (764)
Q Consensus 176 l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~ 232 (764)
..+...+|+++|..+++++.. +..+...|..||..+++...
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~----------------~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIV----------------AQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 344444566666666554433 22244556666666666554
No 170
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=26.57 E-value=28 Score=36.75 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=89.4
Q ss_pred CCCCCCceeeecCCCCcEEEEE-ccCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhcccccchhhhh-cCCCcccee
Q 004271 546 ASSYHVWNKVTSKTGEDIRVSS-RKNLNDPGEPLGVILCAVSSVWLP-VSPNVLFDFLRDEAHRNEWDIM-SNGGPVQTI 622 (764)
Q Consensus 546 ~s~~~~W~~l~~~~~~dvrv~~-r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l-~~g~~vqe~ 622 (764)
+-.+.+|..+... .+++|.. |.- +.| | =.+.| -.-+. ++|..|+||+-|.+-|.+||.+ .+= ..+
T Consensus 25 ~~~~~~We~~~~k--~~~~i~~q~~~--~~g-~-~~Yk~---~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~---e~i 92 (219)
T KOG2761|consen 25 CDAGQGWELVMDK--STPSIWRQRRP--KTG-L-YEYKS---RTVFEDVTPEIVRDVQWDDEYRKKWDDMVIEL---ETI 92 (219)
T ss_pred cCcccchhhhccc--CCceEEEEccc--CCC-C-EEEEE---EEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhh---eee
Confidence 5677899877433 3555555 222 123 2 23433 33467 9999999999999999999953 221 111
Q ss_pred eecccCCCCCCeEEEEee--e---ccCCCeEEEEeeecCCc--ceEEEEcccccccccccccCCCCCCccccCCccEEcc
Q 004271 623 ANLAKGQDRGNAVNIQTM--K---SKENSMWLLQDSYTNAY--ESMVVYAPVDITGMQSVITGCDSSNIAILPSGFSILP 695 (764)
Q Consensus 623 ~~ia~g~~~gn~vsllr~--~---~~~~~~liLQes~td~s--gs~vVyAPvD~~~m~~vm~G~Ds~~v~lLPSGF~I~P 695 (764)
... ...||- |++- + ...+--++++-.+.+.- .-+++-=-|+-+++ ---.+.--|-++=||+.|=
T Consensus 93 e~d---~~tg~~--vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~---P~~~~~vRv~~~~s~~~I~- 163 (219)
T KOG2761|consen 93 EED---PVTGTE--VVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSY---PPLKKKVRVTVYRSGWLIR- 163 (219)
T ss_pred eec---CCCCce--EEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCc---CCcCCcEEEEEEEEEEEEE-
Confidence 111 112332 2321 1 11122344443333321 12222111222211 0000112233556888776
Q ss_pred CCCCCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh-HhhhhHHHHHHHHHhhc
Q 004271 696 DGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS-VNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 696 dg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 760 (764)
.+++. ....||-. .+++-.+|...+..+-|.- +...+-..|.++-.|+.
T Consensus 164 --~~~~~----------~~~~~~~~----~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~ 213 (219)
T KOG2761|consen 164 --VESRS----------GDEQGCAC----EYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALL 213 (219)
T ss_pred --ccccc----------CCCCccEE----EEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHH
Confidence 11111 11134433 3345557777777766654 78888888999888874
No 171
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=25.95 E-value=65 Score=31.87 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=35.1
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHH
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~K 165 (764)
..+|+.|.+.|+..++. ....++|..||++...|+.|.++.+.+.|
T Consensus 5 ~~Lt~rqreVL~lr~~G------lTq~EIAe~LGiS~~tVs~ie~ra~kkLr 50 (141)
T PRK03975 5 SFLTERQIEVLRLRERG------LTQQEIADILGTSRANVSSIEKRARENIE 50 (141)
T ss_pred cCCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 57899999999884322 34679999999999999988765555544
No 172
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.90 E-value=43 Score=31.53 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.4
Q ss_pred EeeecccChhHHHHhhhcccccchhh
Q 004271 586 SSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 586 tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988888777
No 173
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=25.53 E-value=1.5e+02 Score=31.91 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHH---HHHHHHHHHHHhhhc
Q 004271 173 NSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIEN---ARLKAEVEKLRAAVG 239 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN---~~Lk~E~~r~~~~~~ 239 (764)
....-..+.++++||+.|++++. +|+.++ ..+++|.+++..++.
T Consensus 64 ~~~~~~~~~~l~~en~~L~~e~~-----------------------~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 64 VFESLASLFDLREENEELKKELL-----------------------ELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445677889999999988553 344444 477899999988765
No 174
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.31 E-value=1.3e+02 Score=35.34 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 004271 169 ERHENSLLKSEIEKLREENKAMREAINK 196 (764)
Q Consensus 169 ~r~e~~~l~~e~~~l~~en~~l~e~~~~ 196 (764)
.|.+-..+.++|++|++||++|++...+
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4556777888888888888888776554
No 175
>PHA01817 hypothetical protein
Probab=25.23 E-value=1.5e+02 Score=32.67 Aligned_cols=29 Identities=31% Similarity=0.443 Sum_probs=23.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCCCceE
Q 004271 271 GIDKSRIMELVNQGMEELKKMATAGGPLWI 300 (764)
Q Consensus 271 ~~~~~~~~~lA~~Am~El~~la~~~eplWi 300 (764)
|..-+-++.||..||.||+++.+ +.--|-
T Consensus 209 gdsgssllalakqamqellkkvq-dalqwd 237 (479)
T PHA01817 209 GDSGSSLLALAKQAMQELLKKVQ-DALQWD 237 (479)
T ss_pred CCcchhHHHHHHHHHHHHHHHHH-Hhhhcc
Confidence 34468899999999999999987 666783
No 176
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=24.62 E-value=2.6e+02 Score=29.65 Aligned_cols=43 Identities=33% Similarity=0.487 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 004271 173 NSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAA 237 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~ 237 (764)
..+++...+++|.|-..+.+ +|-..|+.||++||.|++|+..-
T Consensus 96 ~~QQ~~~f~kiRsel~S~e~----------------------sEF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 96 SYQQKVDFAKIRSELVSIER----------------------SEFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777776554443 25566888888888888887654
No 177
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=24.17 E-value=1.7e+02 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=23.4
Q ss_pred CcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchh
Q 004271 112 KYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRR 161 (764)
Q Consensus 112 ~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRR 161 (764)
.+..|+.+++..|..... .+.+|++..+++-+++...
T Consensus 35 g~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~ 71 (103)
T cd01106 35 GYRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPS 71 (103)
T ss_pred CceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCc
Confidence 445799999999866542 2345666666666665443
No 178
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.13 E-value=1.8e+02 Score=30.48 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004271 217 EQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 217 ~~~L~~EN~~Lk~E~~r~~ 235 (764)
...|..||++|++|++.+.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3346666666666666544
No 179
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=23.90 E-value=3.1e+02 Score=32.95 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004271 214 TTEEQQLRIENARLKAEVEKLRAAVGK 240 (764)
Q Consensus 214 ~~e~~~L~~EN~~Lk~E~~r~~~~~~~ 240 (764)
..|+.+|+.|+..|++.+.+|...+.+
T Consensus 430 qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 430 QKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999988887665443
No 180
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.90 E-value=95 Score=28.52 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=37.8
Q ss_pred CCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 004271 111 KKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAM 190 (764)
Q Consensus 111 r~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l 190 (764)
..+..||.+++..|... ..|.+..|++-.+|+.+..+.... ......+......+++|...|
T Consensus 34 ~g~R~Yt~~di~~l~~I------------~~llr~~G~~l~~i~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~l 95 (99)
T cd04765 34 GGRRYYRPKDVELLLLI------------KHLLYEKGYTIEGAKQALKEDGAA------AIREEEAEERLPSIRAELLDL 95 (99)
T ss_pred CCCeeeCHHHHHHHHHH------------HHHHHHCCCCHHHHHHHHHhcccc------ccchhhHHHHHHHHHHHHHHH
Confidence 34557999999988543 234556666666666655443322 112334556666667776666
Q ss_pred HHH
Q 004271 191 REA 193 (764)
Q Consensus 191 ~e~ 193 (764)
+..
T Consensus 96 ~~~ 98 (99)
T cd04765 96 RDQ 98 (99)
T ss_pred Hhc
Confidence 653
No 181
>PF15058 Speriolin_N: Speriolin N terminus
Probab=23.02 E-value=1.6e+02 Score=30.67 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 004271 174 SLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRA 236 (764)
Q Consensus 174 ~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~ 236 (764)
+-++.++++|-.||.++|+. -+|..||.+||.-+-..++
T Consensus 8 eGlrhqierLv~ENeeLKKl------------------------VrLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKL------------------------VRLIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHH------------------------HHHHHHHHHHHHHHHHhhc
Confidence 33556667777777777752 3466888888887665554
No 182
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=23.00 E-value=4.5e+02 Score=30.29 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=18.7
Q ss_pred HHHhhhcCCCCC---HHHHHHHHHHhCCCcceEe
Q 004271 124 MEALFKESPHPD---EKQRQQLSKQLGLAPRQVK 154 (764)
Q Consensus 124 LE~~F~~~~yP~---~~~R~eLA~~LgLserQVk 154 (764)
|+..-..|.+.. ...-++||+.|+....+|.
T Consensus 265 l~siRr~Cd~lP~~m~tKveelar~Lr~~I~~Va 298 (442)
T PF06637_consen 265 LESIRRTCDHLPKIMTTKVEELARSLRAGIERVA 298 (442)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHH
Confidence 555555555433 2345689999987766553
No 183
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=22.92 E-value=3.6e+02 Score=27.34 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=38.3
Q ss_pred CcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchh
Q 004271 112 KYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRR 161 (764)
Q Consensus 112 ~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRR 161 (764)
+...+|+++++++.+.-.++ |..-.|..||++.|+++.-|.+-.+--.
T Consensus 82 k~y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~ 129 (164)
T PF12824_consen 82 KKYHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK 129 (164)
T ss_pred ccccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence 33689999999999987766 6788899999999999877766554333
No 184
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=22.82 E-value=1e+02 Score=27.77 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=18.9
Q ss_pred ccChhHHHHhhhcccccchh
Q 004271 591 PVSPNVLFDFLRDEAHRNEW 610 (764)
Q Consensus 591 pv~p~~vf~fLrd~~~R~eW 610 (764)
++||.+||+.|-|+++..+|
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W 20 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW 20 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH
T ss_pred CcCHHHHHHHHCCHhHHhhc
Confidence 47999999999999999999
No 185
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.75 E-value=62 Score=30.13 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=25.5
Q ss_pred EEeeecccChhHHHHhhhcccccchhhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
..++.++.||++||+.+.|.++..+|--
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~ 31 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFG 31 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhccc
Confidence 4678899999999999999999999963
No 186
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=22.59 E-value=1.2e+02 Score=36.94 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHhhhcCC---CCCHHHHHHHHHHhCCC
Q 004271 115 RHTAEQIREMEALFKESP---HPDEKQRQQLSKQLGLA 149 (764)
Q Consensus 115 rfT~~Ql~~LE~~F~~~~---yP~~~~R~eLA~~LgLs 149 (764)
+...+....++..|.... .|..-..-+||.+++-+
T Consensus 196 ~~~~~~~~~i~~yY~~gs~~g~ssa~~~y~La~~l~r~ 233 (622)
T PF02724_consen 196 REREEYREEIEKYYSQGSYYGKSSAVLMYELASSLGRD 233 (622)
T ss_pred HHHHHHHHHHHHHHhcCceecccHHHHHHHHHHHhCCC
Confidence 344555667777774444 36677788899998744
No 187
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.44 E-value=3.2e+02 Score=25.76 Aligned_cols=27 Identities=41% Similarity=0.454 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004271 216 EEQQLRIENARLKAEVEKLRAAVGKCP 242 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~~~~~~~~ 242 (764)
+...|..||++|+-|.+++...+.+..
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567799999999999999998877643
No 188
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.40 E-value=58 Score=31.01 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=25.4
Q ss_pred EEeeecccChhHHHHhhhcccccchhhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
.+++-++.||+.||+.+.|..+-.+|.-
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~~~~w~~ 31 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAESWPDWWP 31 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhhcchhhh
Confidence 3678889999999999999999999994
No 189
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.38 E-value=1.7e+02 Score=32.87 Aligned_cols=93 Identities=23% Similarity=0.367 Sum_probs=52.9
Q ss_pred HhhhcCCCCCHHHHHH------HHHHhCCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 004271 126 ALFKESPHPDEKQRQQ------LSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACC 199 (764)
Q Consensus 126 ~~F~~~~yP~~~~R~e------LA~~LgLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C 199 (764)
--|---||.+..++.. ....+| ||=--|.+.| +.+-.....|+....|+.+.++-+++.-..
T Consensus 26 lp~~~~pfls~~qk~y~~f~f~~iss~g--------wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~es--- 93 (401)
T PF06785_consen 26 LPLVCYPFLSDSQKNYGYFVFSIISSLG--------WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRES--- 93 (401)
T ss_pred HHHhHhhhcCHHHHhcceeehHHHHHhH--------HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHH---
Confidence 3344456666666542 222332 6643333333 223444566777777777666554432111
Q ss_pred CCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004271 200 PNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK 240 (764)
Q Consensus 200 ~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~~~~ 240 (764)
..+ -+.|.+||+..|.+|+.++-++..+..|
T Consensus 94 --------~~e--~q~e~~qL~~qnqkL~nqL~~~~~vf~k 124 (401)
T PF06785_consen 94 --------VEE--RQQESEQLQSQNQKLKNQLFHVREVFMK 124 (401)
T ss_pred --------HHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 000 1237889999999999999998887655
No 190
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=21.89 E-value=2.4e+02 Score=30.35 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCceEEcC
Q 004271 273 DKSRIMELVNQGMEELKKMATAGGPLWIRSL 303 (764)
Q Consensus 273 ~~~~~~~lA~~Am~El~~la~~~eplWi~~~ 303 (764)
+-+.+.++++..+.-.-.--..+.+-|-++.
T Consensus 214 ~Is~~~~lt~~~~~c~~~dl~~~~~as~~s~ 244 (292)
T KOG4005|consen 214 DISRLEELTESLLACITADLETGAGASSPSA 244 (292)
T ss_pred hHHHHHHHHHHHHHHhhhcccccCCCCChhh
Confidence 3445555554443332222344566676653
No 191
>PHA00728 hypothetical protein
Probab=21.67 E-value=1.1e+02 Score=29.57 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004271 215 TEEQQLRIENARLKAEVEKLRAAVGK 240 (764)
Q Consensus 215 ~e~~~L~~EN~~Lk~E~~r~~~~~~~ 240 (764)
.+..||+.||..||..++.+-++.+.
T Consensus 5 teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 37889999999999999998888764
No 192
>PRK12495 hypothetical protein; Provisional
Probab=20.97 E-value=1.3e+02 Score=32.08 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.5
Q ss_pred ccCCCCCCCCCc
Q 004271 196 KACCPNCGMATT 207 (764)
Q Consensus 196 ~~~C~~Cg~p~~ 207 (764)
...|+.||.|+.
T Consensus 42 a~hC~~CG~PIp 53 (226)
T PRK12495 42 NAHCDECGDPIF 53 (226)
T ss_pred hhhcccccCccc
Confidence 345999999886
No 193
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=20.96 E-value=57 Score=29.91 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=23.2
Q ss_pred EeeecccChhHHHHhhhcccccchhh
Q 004271 586 SSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 586 tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
-++-++.||++||+.|-|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~~td~~~~~~W~ 29 (136)
T cd08893 4 YVTYIRATPEKVWQALTDPEFTRQYW 29 (136)
T ss_pred EEEEecCCHHHHHHHHcCchhhhhee
Confidence 35667899999999999999999996
No 194
>TIGR03299 LGT_TIGR03299 phage/plasmid-related protein TIGR03299. Members of this uncharacterized protein family are found in various Mycobacterium phage genomes, in Streptomyces coelicolor plasmid SCP1, and in bacterial genomes near various markers that suggest lateral gene transfer. The function is unknown.
Probab=20.95 E-value=3.7e+02 Score=30.00 Aligned_cols=93 Identities=17% Similarity=0.337 Sum_probs=57.1
Q ss_pred cEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccc--hhh---hhcCCCccceeeecccCCCCCCeEE
Q 004271 562 DIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRN--EWD---IMSNGGPVQTIANLAKGQDRGNAVN 636 (764)
Q Consensus 562 dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~--eWd---~l~~g~~vqe~~~ia~g~~~gn~vs 636 (764)
|-++.+|+. .++ +|+..+.=|=||.|+.+|.|++|.-..+ +|. +|..|.-+=-++.+. +.+.
T Consensus 57 ~~k~~vRsd---t~~----~LgVVs~rY~~vQn~e~~~f~~~l~~~~g~~~ETAG~LkgGr~~w~lak~p------~~~~ 123 (309)
T TIGR03299 57 DQKVLVRSD---TGA----PLSVVSDRYQVVQPQEVLEFYVDLLGDGDFVLETAGVLKGGRKLWALARTP------QTIT 123 (309)
T ss_pred CeeEEEEcC---CCC----eeeEeCCCcEEECHHHHHHHHHHHhhCCCcEEEeccccCCccEEEEEEECC------CcEE
Confidence 445556664 234 5666699999999999999999844432 222 244554443444431 1222
Q ss_pred EEeeeccC--CCeEEEEeeecCCcceEEEEcccccc
Q 004271 637 IQTMKSKE--NSMWLLQDSYTNAYESMVVYAPVDIT 670 (764)
Q Consensus 637 llr~~~~~--~~~liLQes~td~sgs~vVyAPvD~~ 670 (764)
| + +.+ ..-+||-.||-+.++-.+.+.||=+-
T Consensus 124 v-~--g~D~~~~yllL~NSHDGssa~~~~~t~vRvV 156 (309)
T TIGR03299 124 V-K--GDDPVRPYLLLATAHDGTLATTAQFTSVRVV 156 (309)
T ss_pred e-c--CCCcccceEEEEeccCCccceEEecCcEEEE
Confidence 2 1 212 45688999888877777777777643
No 195
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.89 E-value=6.6e+02 Score=27.32 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004271 216 EEQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~ 235 (764)
+..+|+.|+..|++-+....
T Consensus 237 ~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 237 QVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66778888888887766543
No 196
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=20.87 E-value=1.3e+02 Score=37.19 Aligned_cols=53 Identities=36% Similarity=0.513 Sum_probs=35.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 004271 171 HENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 171 ~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~ 235 (764)
..+..|.+.++.+++||+.+.+.+.. -+..+-..+++.-+|..|+|-|++.+-
T Consensus 455 ~kneellk~~e~q~~Enk~~~~~~~e------------kd~~l~~~kq~~d~e~~rik~ev~eal 507 (861)
T PF15254_consen 455 SKNEELLKVIENQKEENKRLRKMFQE------------KDQELLENKQQFDIETTRIKIEVEEAL 507 (861)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34666777788888888888877643 111222356777788999998887543
No 197
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.76 E-value=3.8e+02 Score=25.40 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccch
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNR 160 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNR 160 (764)
...+..|+.+++..|+.. ...+.+|++-.+|+..|...
T Consensus 32 ~~g~R~Y~~~~l~~l~~I-------------~~l~~~G~sl~eI~~~l~~~ 69 (124)
T TIGR02051 32 EGGYRRYPEETVKRLRFI-------------KRAQELGFSLEEIGGLLGLV 69 (124)
T ss_pred CCCCEeECHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhcc
Confidence 345667899999998432 23566677666666666443
No 198
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.75 E-value=1.2e+02 Score=31.20 Aligned_cols=44 Identities=32% Similarity=0.523 Sum_probs=28.6
Q ss_pred HHHHHhcc-CCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 004271 190 MREAINKA-CCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 190 l~e~~~~~-~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~ 235 (764)
+.+|+... .||.||....-.+.+- ..+.|..+-.+|+.++++..
T Consensus 125 fdeA~~~~F~Cp~Cg~~L~~~d~s~--~i~~l~~~i~~l~~~l~~~~ 169 (176)
T COG1675 125 FDEAMELGFTCPKCGEDLEEYDSSE--EIEELESELDELEEELERND 169 (176)
T ss_pred HHHHHHhCCCCCCCCchhhhccchH--HHHHHHHHHHHHHHHHhccc
Confidence 44555543 4999999887666554 55566666667777766544
No 199
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=20.73 E-value=2.5e+02 Score=32.16 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 004271 173 NSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRA 236 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~ 236 (764)
...++.+++.++.++..+.+ +..+++.|..++++|+.++..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKE-----------------------EQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhC
Confidence 44455666666666666654 455677888889999988764
No 200
>PRK02224 chromosome segregation protein; Provisional
Probab=20.64 E-value=3.4e+02 Score=33.89 Aligned_cols=16 Identities=25% Similarity=0.729 Sum_probs=11.9
Q ss_pred hccCCCCCCCCCccCC
Q 004271 195 NKACCPNCGMATTSRD 210 (764)
Q Consensus 195 ~~~~C~~Cg~p~~~~~ 210 (764)
....||.||.+....+
T Consensus 450 ~~~~Cp~C~r~~~~~~ 465 (880)
T PRK02224 450 EAGKCPECGQPVEGSP 465 (880)
T ss_pred hcccCCCCCCcCCCcc
Confidence 4577999999875543
No 201
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.46 E-value=5e+02 Score=22.59 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004271 175 LLKSEIEKLREENKAMRE 192 (764)
Q Consensus 175 ~l~~e~~~l~~en~~l~e 192 (764)
.|-..++.|+.||..+++
T Consensus 11 ~Li~~~~~L~~EN~~Lr~ 28 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRA 28 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566667777777666
No 202
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=20.37 E-value=90 Score=20.79 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeec
Q 004271 115 RHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFW 156 (764)
Q Consensus 115 rfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvW 156 (764)
.++.++...+...|... + ...++|+.+|++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~-~----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAG-E----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHh
Confidence 35666666666666532 2 4568899999987776655
No 203
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.23 E-value=1.9e+02 Score=25.80 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=34.4
Q ss_pred CcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 004271 112 KYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMR 191 (764)
Q Consensus 112 ~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~ 191 (764)
.+..|+..++..|... ..|...+|++...|+.-+. +..+.+.|+.+...++
T Consensus 35 g~R~y~~~dv~~l~~i------------~~L~~d~g~~l~~i~~~l~-----------------l~~~~~~l~~~l~~l~ 85 (91)
T cd04766 35 GTRRYSERDIERLRRI------------QRLTQELGVNLAGVKRILE-----------------LEEELAELRAELDELR 85 (91)
T ss_pred CCeeECHHHHHHHHHH------------HHHHHHcCCCHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 4457999999998544 3555567777666543331 5556666666666666
Q ss_pred HHHh
Q 004271 192 EAIN 195 (764)
Q Consensus 192 e~~~ 195 (764)
+.++
T Consensus 86 ~~~~ 89 (91)
T cd04766 86 ARLR 89 (91)
T ss_pred HHhc
Confidence 5553
No 204
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.08 E-value=5.8e+02 Score=32.02 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHhCCCcceEe
Q 004271 134 PDEKQRQQLSKQLGLAPRQVK 154 (764)
Q Consensus 134 P~~~~R~eLA~~LgLserQVk 154 (764)
|....=.++|+.+|+++.-|+
T Consensus 480 ~g~S~a~~iA~~~Glp~~ii~ 500 (771)
T TIGR01069 480 PGESYAFEIAQRYGIPHFIIE 500 (771)
T ss_pred CCCcHHHHHHHHhCcCHHHHH
Confidence 344455678999999998775
Done!