Query 004271
Match_columns 764
No_of_seqs 408 out of 1783
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 4.6E-20 1.6E-24 187.8 19.0 202 273-504 20-229 (231)
2 2dmt_A Homeobox protein BARH-l 99.7 7.1E-18 2.4E-22 146.3 4.8 62 106-167 14-75 (80)
3 3a01_A Homeodomain-containing 99.7 8E-18 2.7E-22 150.3 4.6 75 106-180 14-88 (93)
4 1fjl_A Paired protein; DNA-bin 99.7 8.5E-18 2.9E-22 146.1 4.5 64 106-169 15-78 (81)
5 1nk2_P Homeobox protein VND; h 99.7 1.4E-17 4.7E-22 143.5 5.4 66 106-171 6-71 (77)
6 2kt0_A Nanog, homeobox protein 99.7 1.1E-17 3.9E-22 146.0 4.9 63 106-168 19-81 (84)
7 2da3_A Alpha-fetoprotein enhan 99.7 1.2E-17 4.2E-22 144.3 4.4 63 106-168 14-76 (80)
8 2dmq_A LIM/homeobox protein LH 99.7 2.3E-17 8E-22 142.8 4.7 66 107-172 5-70 (80)
9 2cue_A Paired box protein PAX6 99.7 3.9E-17 1.3E-21 141.7 5.6 64 107-170 5-68 (80)
10 1wh5_A ZF-HD homeobox family p 99.7 1.6E-17 5.6E-22 144.5 3.2 61 106-166 14-78 (80)
11 2dms_A Homeobox protein OTX2; 99.7 1.7E-17 5.9E-22 143.8 3.0 65 106-170 4-68 (80)
12 1puf_A HOX-1.7, homeobox prote 99.7 5.8E-17 2E-21 139.6 5.9 65 106-170 10-74 (77)
13 2cra_A Homeobox protein HOX-B1 99.7 2.2E-17 7.6E-22 139.6 2.9 62 107-168 5-66 (70)
14 2vi6_A Homeobox protein nanog; 99.7 1.2E-17 4.2E-22 137.9 1.1 60 108-167 2-61 (62)
15 2dmu_A Homeobox protein goosec 99.7 4.7E-17 1.6E-21 137.5 4.5 62 107-168 5-66 (70)
16 1wh7_A ZF-HD homeobox family p 99.7 2.4E-17 8.1E-22 143.6 2.7 60 106-166 14-78 (80)
17 2h1k_A IPF-1, pancreatic and d 99.6 4.2E-17 1.5E-21 135.1 3.8 59 109-167 3-61 (63)
18 1zq3_P PRD-4, homeotic bicoid 99.6 6.1E-17 2.1E-21 136.2 4.5 64 109-172 2-65 (68)
19 2hdd_A Protein (engrailed home 99.6 3.5E-17 1.2E-21 134.7 2.9 58 109-166 3-60 (61)
20 2da2_A Alpha-fetoprotein enhan 99.6 4.2E-17 1.5E-21 137.7 3.2 63 106-168 4-66 (70)
21 1ig7_A Homeotic protein MSX-1; 99.6 6E-17 2.1E-21 131.8 3.8 57 110-166 1-57 (58)
22 2e1o_A Homeobox protein PRH; D 99.6 8E-17 2.7E-21 136.2 4.7 61 108-168 6-66 (70)
23 2djn_A Homeobox protein DLX-5; 99.6 4.4E-17 1.5E-21 137.8 2.6 61 107-167 5-65 (70)
24 2da1_A Alpha-fetoprotein enhan 99.6 4.9E-17 1.7E-21 137.3 2.8 62 106-167 4-65 (70)
25 2l7z_A Homeobox protein HOX-A1 99.6 8.7E-17 3E-21 137.2 4.0 63 106-168 4-66 (73)
26 1ftt_A TTF-1 HD, thyroid trans 99.6 5.2E-17 1.8E-21 136.7 2.4 61 109-169 2-62 (68)
27 1ahd_P Antennapedia protein mu 99.6 7.2E-17 2.4E-21 135.9 3.0 61 109-169 2-62 (68)
28 1yz8_P Pituitary homeobox 2; D 99.6 4.6E-17 1.6E-21 136.9 1.2 63 108-170 2-64 (68)
29 1jgg_A Segmentation protein EV 99.6 1E-16 3.4E-21 131.5 3.0 58 110-167 2-59 (60)
30 2da4_A Hypothetical protein DK 99.6 9.1E-17 3.1E-21 139.3 2.9 63 106-168 5-71 (80)
31 1bw5_A ISL-1HD, insulin gene e 99.6 7.7E-17 2.6E-21 134.7 2.3 60 108-167 2-61 (66)
32 3nar_A ZHX1, zinc fingers and 99.6 8.1E-17 2.8E-21 144.4 2.6 64 107-170 23-86 (96)
33 1akh_A Protein (mating-type pr 99.6 8.7E-17 3E-21 132.1 2.2 59 107-165 3-61 (61)
34 1b8i_A Ultrabithorax, protein 99.6 9.5E-17 3.3E-21 139.7 2.2 61 107-167 18-78 (81)
35 3rkq_A Homeobox protein NKX-2. 99.6 1.7E-16 5.9E-21 128.6 3.4 57 109-165 2-58 (58)
36 2r5y_A Homeotic protein sex co 99.6 9.7E-17 3.3E-21 141.6 1.9 61 107-167 26-86 (88)
37 2m0c_A Homeobox protein arista 99.6 2.1E-16 7.1E-21 134.8 3.8 63 106-168 6-68 (75)
38 1uhs_A HOP, homeodomain only p 99.6 2.6E-16 8.8E-21 133.8 4.3 59 110-168 2-61 (72)
39 2hi3_A Homeodomain-only protei 99.6 2.6E-16 8.8E-21 134.2 4.3 60 110-169 3-63 (73)
40 3a03_A T-cell leukemia homeobo 99.6 2.2E-16 7.4E-21 128.0 3.3 54 114-167 2-55 (56)
41 3a02_A Homeobox protein arista 99.6 1.6E-16 5.6E-21 130.3 2.5 57 112-168 2-58 (60)
42 2da5_A Zinc fingers and homeob 99.6 1.8E-16 6.2E-21 136.0 2.6 59 112-170 10-68 (75)
43 1b72_A Protein (homeobox prote 99.6 3.1E-16 1.1E-20 140.8 3.7 63 107-169 32-94 (97)
44 2cuf_A FLJ21616 protein; homeo 99.6 4.2E-16 1.4E-20 139.4 4.1 65 106-170 4-83 (95)
45 2k40_A Homeobox expressed in E 99.6 3.6E-16 1.2E-20 131.0 3.3 60 110-169 2-61 (67)
46 2ecc_A Homeobox and leucine zi 99.6 4.1E-16 1.4E-20 134.4 3.7 58 113-170 7-64 (76)
47 1x2n_A Homeobox protein pknox1 99.6 5.5E-16 1.9E-20 132.0 3.5 62 107-168 5-69 (73)
48 2ly9_A Zinc fingers and homeob 99.6 5.1E-16 1.7E-20 132.4 2.3 61 109-169 6-66 (74)
49 2ecb_A Zinc fingers and homeob 99.6 6.5E-16 2.2E-20 137.1 2.4 56 114-169 16-71 (89)
50 2dn0_A Zinc fingers and homeob 99.6 7.6E-16 2.6E-20 132.3 2.3 58 111-168 10-67 (76)
51 1puf_B PRE-B-cell leukemia tra 99.5 1.2E-15 4.2E-20 129.8 3.2 61 110-170 2-65 (73)
52 1au7_A Protein PIT-1, GHF-1; c 99.5 5.7E-16 1.9E-20 149.1 1.0 62 106-167 84-145 (146)
53 2da6_A Hepatocyte nuclear fact 99.5 3.3E-15 1.1E-19 135.3 5.2 65 106-170 3-88 (102)
54 2dmn_A Homeobox protein TGIF2L 99.5 2.4E-15 8.1E-20 131.6 4.1 65 107-171 5-72 (83)
55 2cqx_A LAG1 longevity assuranc 99.5 6.7E-16 2.3E-20 131.7 0.4 57 110-166 9-66 (72)
56 1e3o_C Octamer-binding transcr 99.5 1E-15 3.4E-20 149.4 1.6 61 107-167 99-159 (160)
57 1b72_B Protein (PBX1); homeodo 99.5 2.3E-15 7.9E-20 132.2 3.5 61 110-170 2-65 (87)
58 1k61_A Mating-type protein alp 99.5 2E-15 7E-20 123.6 2.8 55 112-166 1-58 (60)
59 2dmp_A Zinc fingers and homeob 99.5 4.1E-15 1.4E-19 131.8 4.8 57 113-169 17-73 (89)
60 1du6_A PBX1, homeobox protein 99.5 1.3E-15 4.3E-20 126.4 1.4 57 110-166 4-63 (64)
61 2xsd_C POU domain, class 3, tr 99.5 1.6E-15 5.6E-20 148.7 2.3 64 106-169 96-159 (164)
62 1mnm_C Protein (MAT alpha-2 tr 99.5 2E-15 6.7E-20 132.9 2.3 59 107-165 25-86 (87)
63 1lfb_A Liver transcription fac 99.5 1.4E-15 4.7E-20 137.5 0.2 64 106-169 6-90 (99)
64 1le8_B Mating-type protein alp 99.5 2E-15 6.9E-20 131.9 1.3 58 110-167 3-63 (83)
65 1wi3_A DNA-binding protein SAT 99.5 4.5E-15 1.5E-19 124.4 3.3 60 106-165 4-64 (71)
66 3nau_A Zinc fingers and homeob 99.5 4.2E-15 1.4E-19 124.4 3.0 52 117-168 12-63 (66)
67 3d1n_I POU domain, class 6, tr 99.5 4.3E-15 1.5E-19 143.5 3.4 61 106-166 90-150 (151)
68 2l9r_A Homeobox protein NKX-3. 99.5 1.3E-15 4.4E-20 129.1 -0.3 58 113-170 8-65 (69)
69 1x2m_A LAG1 longevity assuranc 99.5 3.5E-15 1.2E-19 124.6 0.8 49 118-166 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.5 1.6E-14 5.4E-19 140.3 3.1 61 107-167 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 1.2E-14 4E-19 121.3 1.5 52 115-166 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 1.9E-14 6.4E-19 140.6 1.5 63 106-168 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 9.6E-14 3.3E-18 116.7 1.3 58 114-171 3-63 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 2.2E-13 7.6E-18 136.8 -0.5 61 106-166 112-193 (194)
75 1em2_A MLN64 protein; beta bar 99.3 5.8E-11 2E-15 120.6 16.8 200 274-504 20-226 (229)
76 3p0l_A Steroidogenic acute reg 99.3 3.1E-11 1.1E-15 122.1 14.6 196 275-503 10-214 (221)
77 2pso_A STAR-related lipid tran 99.3 1.2E-11 4.2E-16 127.3 11.8 194 278-503 31-227 (237)
78 2h8r_A Hepatocyte nuclear fact 99.2 3.6E-12 1.2E-16 129.7 2.3 60 105-164 138-218 (221)
79 2lk2_A Homeobox protein TGIF1; 99.1 1.7E-11 5.8E-16 108.5 3.2 58 113-170 9-69 (89)
80 1mh3_A Maltose binding-A1 home 99.0 2.5E-11 8.6E-16 131.9 -0.4 57 109-165 365-421 (421)
81 2da7_A Zinc finger homeobox pr 99.0 7.7E-11 2.6E-15 99.4 2.6 45 119-163 15-59 (71)
82 1jss_A Stard4, cholesterol-reg 99.0 2.4E-09 8.1E-14 108.7 13.2 194 275-503 24-223 (224)
83 1ln1_A PC-TP, phosphatidylchol 99.0 5.5E-09 1.9E-13 104.3 14.1 151 334-503 52-209 (214)
84 3fo5_A Thioesterase, adipose a 98.8 2E-08 6.9E-13 105.0 11.6 152 337-503 91-246 (258)
85 3qsz_A STAR-related lipid tran 98.5 1.6E-06 5.3E-11 85.1 14.3 153 334-503 27-179 (189)
86 2e3n_A Lipid-transfer protein 98.4 3E-06 1E-10 87.3 13.4 200 276-503 23-246 (255)
87 2nzz_A Penetratin conjugated G 98.3 3.9E-08 1.3E-12 73.3 -1.4 22 151-172 1-22 (37)
88 2r55_A STAR-related lipid tran 97.5 0.0047 1.6E-07 62.3 18.4 195 523-760 18-227 (231)
89 3qsz_A STAR-related lipid tran 97.0 0.012 4.2E-07 57.2 14.9 168 550-760 3-178 (189)
90 1em2_A MLN64 protein; beta bar 96.9 0.023 7.7E-07 57.2 16.3 192 527-760 21-224 (229)
91 3p0l_A Steroidogenic acute reg 96.9 0.038 1.3E-06 55.3 17.8 192 526-760 9-213 (221)
92 1jss_A Stard4, cholesterol-reg 96.6 0.026 9E-07 56.8 14.1 172 549-760 42-222 (224)
93 2pso_A STAR-related lipid tran 96.5 0.056 1.9E-06 55.2 15.6 172 548-761 48-227 (237)
94 1ln1_A PC-TP, phosphatidylchol 96.3 0.059 2E-06 53.1 14.0 169 548-760 26-208 (214)
95 2d4r_A Hypothetical protein TT 95.5 0.15 5E-06 45.5 12.2 140 338-504 6-145 (147)
96 3fo5_A Thioesterase, adipose a 95.2 0.43 1.5E-05 49.6 16.1 179 490-697 10-202 (258)
97 3tfz_A Cyclase; helix-GRIP, BE 89.0 5.2 0.00018 38.0 13.0 146 337-506 8-162 (172)
98 3tvq_A Multifunctional cyclase 88.2 7.6 0.00026 37.4 13.6 144 337-506 6-149 (169)
99 3tl1_A WHIE ORF VI, polyketide 87.4 7.8 0.00027 36.8 13.0 141 337-505 6-148 (159)
100 1t17_A Conserved hypothetical 85.1 2.5 8.5E-05 38.8 8.0 141 337-504 5-145 (148)
101 2jee_A YIIU; FTSZ, septum, coi 81.2 3.6 0.00012 35.6 6.7 52 173-240 22-77 (81)
102 3p9v_A Uncharacterized protein 79.9 23 0.00079 33.2 12.7 140 337-502 10-150 (161)
103 2ys9_A Homeobox and leucine zi 79.2 0.5 1.7E-05 39.8 0.7 39 121-159 18-56 (70)
104 2wt7_B Transcription factor MA 76.8 5.5 0.00019 35.1 6.6 69 147-238 17-85 (90)
105 2e3n_A Lipid-transfer protein 73.3 2.9 0.0001 42.4 4.7 179 548-759 45-244 (255)
106 2jn6_A Protein CGL2762, transp 72.8 0.21 7.4E-06 43.3 -3.4 43 114-159 4-46 (97)
107 1t2k_D Cyclic-AMP-dependent tr 69.0 16 0.00054 29.5 7.2 40 169-231 20-59 (61)
108 1ci6_A Transcription factor AT 66.8 19 0.00063 29.5 7.2 41 169-232 21-61 (63)
109 2pcs_A Conserved protein; stru 65.9 79 0.0027 28.8 14.6 138 339-502 8-147 (162)
110 1hjb_A Ccaat/enhancer binding 62.9 16 0.00053 32.0 6.4 20 220-239 55-74 (87)
111 1deb_A APC protein, adenomatou 57.0 21 0.00071 28.2 5.4 21 215-235 10-30 (54)
112 2j5u_A MREC protein; bacterial 55.4 8.6 0.00029 39.7 4.1 17 216-232 44-60 (255)
113 3he5_B Synzip2; heterodimeric 53.9 48 0.0016 25.3 6.8 43 173-238 5-47 (52)
114 2qpv_A Uncharacterized protein 51.7 9.3 0.00032 36.4 3.4 30 583-612 28-57 (156)
115 1gu4_A CAAT/enhancer binding p 50.5 30 0.001 29.7 6.0 20 219-238 54-73 (78)
116 1jnm_A Proto-oncogene C-JUN; B 49.5 23 0.00078 28.7 4.9 21 172-192 23-43 (62)
117 1gd2_E Transcription factor PA 47.0 36 0.0012 28.6 5.8 14 218-231 53-66 (70)
118 2wt7_A Proto-oncogene protein 45.6 74 0.0025 25.8 7.4 23 170-192 22-44 (63)
119 1l8d_A DNA double-strand break 45.3 34 0.0012 30.3 5.9 11 197-207 48-58 (112)
120 3s9g_A Protein hexim1; cyclin 42.8 54 0.0018 29.3 6.4 56 169-233 35-90 (104)
121 2d4r_A Hypothetical protein TT 42.7 11 0.00036 33.1 2.1 29 584-612 4-32 (147)
122 1hjb_A Ccaat/enhancer binding 41.1 83 0.0028 27.4 7.4 40 173-235 38-77 (87)
123 2elh_A CG11849-PA, LD40883P; s 40.6 13 0.00043 31.6 2.1 43 110-157 17-59 (87)
124 1go4_E MAD1 (mitotic arrest de 39.1 1E+02 0.0035 27.6 7.8 70 171-240 19-93 (100)
125 2pcs_A Conserved protein; stru 38.5 11 0.00037 34.8 1.5 28 584-611 5-32 (162)
126 2ns9_A Hypothetical protein AP 38.0 13 0.00044 33.8 1.9 29 583-611 14-42 (157)
127 3m91_A Proteasome-associated A 37.9 75 0.0026 25.1 6.0 38 175-235 13-50 (51)
128 2rgt_A Fusion of LIM/homeobox 37.8 1.5 5E-05 42.1 -4.8 29 108-136 135-163 (169)
129 1t17_A Conserved hypothetical 36.7 18 0.0006 33.0 2.6 29 584-612 4-32 (148)
130 1gu4_A CAAT/enhancer binding p 36.4 1.1E+02 0.0039 26.0 7.4 19 217-235 45-63 (78)
131 2yy0_A C-MYC-binding protein; 35.9 62 0.0021 25.6 5.3 17 216-232 20-36 (53)
132 1hlv_A CENP-B, major centromer 35.5 20 0.00069 32.0 2.8 48 112-162 4-51 (131)
133 3ggn_A Uncharacterized protein 35.1 19 0.00064 33.4 2.5 28 584-611 6-33 (155)
134 3a2a_A Voltage-gated hydrogen 34.8 77 0.0026 25.4 5.5 25 216-240 26-50 (58)
135 3ra3_B P2F; coiled coil domain 34.0 32 0.0011 23.3 2.7 17 218-234 3-19 (28)
136 3m48_A General control protein 34.0 45 0.0015 24.1 3.7 24 216-239 8-31 (33)
137 2le1_A Uncharacterized protein 33.0 2.2E+02 0.0075 25.5 9.5 37 339-379 7-43 (151)
138 2leq_A Uncharacterized protein 32.7 24 0.00084 31.2 2.8 27 584-610 7-33 (146)
139 3q6a_A Uncharacterized protein 32.1 26 0.0009 31.3 3.0 27 585-611 4-30 (135)
140 2glo_A Brinker CG9653-PA; prot 32.1 14 0.00049 28.9 1.0 44 114-158 4-47 (59)
141 3p51_A Uncharacterized protein 30.6 1.7E+02 0.006 27.4 8.6 49 338-391 6-54 (160)
142 3a5t_A Transcription factor MA 29.9 2 6.8E-05 39.1 -4.9 66 147-235 27-92 (107)
143 1x53_A Activator of 90 kDa hea 29.5 25 0.00087 31.9 2.4 28 584-611 13-40 (145)
144 3tfz_A Cyclase; helix-GRIP, BE 28.2 30 0.001 32.6 2.8 29 583-611 6-34 (172)
145 3m9b_A Proteasome-associated A 26.9 54 0.0018 33.9 4.5 38 176-236 59-96 (251)
146 1jko_C HIN recombinase, DNA-in 26.3 14 0.00049 26.9 0.1 43 115-162 5-47 (52)
147 3c57_A Two component transcrip 26.2 22 0.00077 30.5 1.3 47 112-164 24-70 (95)
148 3hug_A RNA polymerase sigma fa 25.7 38 0.0013 28.6 2.6 49 114-167 36-84 (92)
149 1xn6_A Hypothetical protein BC 25.3 27 0.00091 31.5 1.7 28 584-611 10-37 (143)
150 2rnj_A Response regulator prot 24.6 19 0.00066 30.5 0.6 48 111-164 25-72 (91)
151 3lph_A Protein REV; helix-loop 24.5 72 0.0025 26.9 3.9 36 121-170 18-53 (72)
152 2le1_A Uncharacterized protein 24.3 46 0.0016 30.2 3.2 28 584-611 4-31 (151)
153 1z94_A Conserved hypothetical 24.3 27 0.00091 31.1 1.5 26 586-611 7-32 (147)
154 2kew_A Uncharacterized protein 24.0 29 0.00098 31.9 1.7 28 584-611 12-39 (152)
155 1tc3_C Protein (TC3 transposas 23.2 34 0.0012 24.3 1.6 40 115-159 5-44 (51)
156 3ggn_A Uncharacterized protein 22.8 4.3E+02 0.015 23.9 12.9 113 338-478 8-121 (155)
157 2lcg_A Uncharacterized protein 22.8 30 0.001 31.2 1.5 26 585-610 4-29 (142)
158 2lgh_A Uncharacterized protein 22.6 31 0.0011 31.4 1.6 26 585-610 4-29 (144)
159 3iv1_A Tumor susceptibility ge 21.8 3.3E+02 0.011 23.3 7.7 38 159-196 13-50 (78)
160 2l8o_A Uncharacterized protein 21.7 32 0.0011 31.4 1.5 26 585-610 5-30 (144)
161 2yf2_A C4B binding protein; im 21.4 18 0.00061 29.0 -0.3 35 200-236 21-55 (65)
162 1xuv_A Hypothetical protein MM 20.9 36 0.0012 32.1 1.7 27 585-611 25-51 (178)
163 3tvq_A Multifunctional cyclase 20.8 48 0.0016 31.7 2.6 29 584-612 5-33 (169)
164 3ulq_B Transcriptional regulat 20.8 43 0.0015 28.7 2.1 42 110-157 24-65 (90)
165 2dgc_A Protein (GCN4); basic d 20.8 2.6E+02 0.009 22.6 6.6 22 216-237 38-59 (63)
166 2oa5_A Hypothetical protein BQ 20.7 1.3E+02 0.0045 27.3 5.2 25 172-196 9-33 (110)
167 1t6f_A Geminin; coiled-coil, c 20.7 1.5E+02 0.0051 21.8 4.4 8 220-227 26-33 (37)
168 1xn5_A BH1534 unknown conserve 20.5 36 0.0012 30.9 1.6 27 585-611 8-34 (146)
169 2yy0_A C-MYC-binding protein; 20.0 36 0.0012 27.0 1.3 16 177-192 18-33 (53)
170 3uid_A Putative uncharacterize 20.0 1.9E+02 0.0065 27.0 6.6 26 586-611 17-42 (168)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=187.84 Aligned_cols=202 Identities=11% Similarity=0.105 Sum_probs=161.0
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHH
Q 004271 273 DKSRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQS 352 (764)
Q Consensus 273 ~~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~ 352 (764)
+++.++++|++||+||+++++.. ..|....+. ++.+.|.+.. .+....+.|..++|.+.+.+|++.
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~--------~gv~v~~~~~-----~~~~~~~~k~~~~v~~~~~~v~~~ 85 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRDT-AGWKICREG--------NGVSVSWRPS-----VEFPGNLYRGEGIVYGTLEEVWDC 85 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEECC--------SSEEEEEEEC-----SSSSSEEEEEEEEESSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeC--------CCEEEEEEcc-----CCCCCcEEEEEEEECCCHHHHHHH
Confidence 58999999999999999999754 789876432 2334453332 133457889999999999999999
Q ss_pred hcC-----hhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehh-hhhcccCcccCceeEEEEeeeecCCCcEEEEEE
Q 004271 353 FTD-----VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFA-ELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDV 426 (764)
Q Consensus 353 lmD-----~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~a-el~v~SPLvp~Re~~flRyckq~~~g~w~VvDv 426 (764)
||+ +.+|-..|.. +++|+.|+.. -.++|. ....++++|++|||.++||+++.++|.|+|+..
T Consensus 86 l~~~d~~~r~~Wd~~~~~----~~vle~i~~~--------~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~ 153 (231)
T 2r55_A 86 VKPAVGGLRVKWDENVTG----FEIIQSITDT--------LCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNAT 153 (231)
T ss_dssp HCC--CCSHHHHCTTCSE----EEEEEECSSS--------EEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEE
T ss_pred HHhhCcchhhhhccccce----eEEEEEcCCC--------EEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEE
Confidence 977 8999877664 4888888631 233442 223456799999999999999999999999999
Q ss_pred eccCccccccCccccccccCCceeeeeCC--CCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 004271 427 SIDKVEENIDASLAKCRKRPSGCIVEDKS--NGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERL 504 (764)
Q Consensus 427 S~d~~~~~~~~~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cerl 504 (764)
|++.-..-+...++|++.++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.+..+...|++.|+++|+.+
T Consensus 154 Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 154 HVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp ECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred eccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 99843221234689999999999999998 78999999999998765 55 68899999999999999999999863
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-18 Score=146.31 Aligned_cols=62 Identities=34% Similarity=0.465 Sum_probs=58.6
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
.+++||.|++||.+|+.+||..|+.++||+..+|++||.+|||+++||++||||||+|+|+.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 45667889999999999999999999999999999999999999999999999999999964
No 3
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=8e-18 Score=150.29 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=62.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhhhhhhHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEI 180 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~ 180 (764)
++++|+.|++||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|++..+.+....++.+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~ 88 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAAN 88 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---------
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999987766555444443
No 4
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.69 E-value=8.5e-18 Score=146.06 Aligned_cols=64 Identities=30% Similarity=0.612 Sum_probs=59.1
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
++++||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 5667888999999999999999999999999999999999999999999999999999998654
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.69 E-value=1.4e-17 Score=143.50 Aligned_cols=66 Identities=35% Similarity=0.519 Sum_probs=61.4
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhh
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERH 171 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~ 171 (764)
++++|+.|++||.+|+.+||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456678899999999999999999999999999999999999999999999999999999876654
No 6
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=146.03 Aligned_cols=63 Identities=33% Similarity=0.406 Sum_probs=59.3
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
++++||.|+.||.+|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+|+.+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 566788899999999999999999999999999999999999999999999999999999743
No 7
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=144.28 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=59.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
++++||.|++||.+|+.+||..|..++||+..+|++||.+|||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456678899999999999999999999999999999999999999999999999999999743
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=142.77 Aligned_cols=66 Identities=29% Similarity=0.526 Sum_probs=60.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHE 172 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e 172 (764)
.++||.|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++..+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 345778899999999999999999999999999999999999999999999999999998776544
No 9
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=3.9e-17 Score=141.66 Aligned_cols=64 Identities=25% Similarity=0.487 Sum_probs=59.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
.+.||.|++||.+|+.+||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3457788999999999999999999999999999999999999999999999999999986554
No 10
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=1.6e-17 Score=144.49 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=57.1
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhc----CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKE----SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~----~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
.+++||.||.||.+|+.+||..|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3456788899999999999999999 999999999999999999999999999999999874
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.7e-17 Score=143.78 Aligned_cols=65 Identities=28% Similarity=0.519 Sum_probs=60.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
.++.||.|++||.+|+.+||..|+.++||+..+|++||.+|||+++||++||||||+|+|+++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 34567788999999999999999999999999999999999999999999999999999986544
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.66 E-value=5.8e-17 Score=139.60 Aligned_cols=65 Identities=35% Similarity=0.491 Sum_probs=60.1
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
.++.|+.|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|+....
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34567788999999999999999999999999999999999999999999999999999987654
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.2e-17 Score=139.59 Aligned_cols=62 Identities=31% Similarity=0.482 Sum_probs=57.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
++.|+.|++||.+|+.+||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45577889999999999999999999999999999999999999999999999999999743
No 14
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.65 E-value=1.2e-17 Score=137.88 Aligned_cols=60 Identities=32% Similarity=0.409 Sum_probs=52.9
Q ss_pred CCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 108 KKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 108 kkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
++|+.|+.||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 356788999999999999999999999999999999999999999999999999999974
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-17 Score=137.50 Aligned_cols=62 Identities=32% Similarity=0.584 Sum_probs=57.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
.+.||.|++||.+|+.+||..|+.++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34567889999999999999999999999999999999999999999999999999999753
No 16
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=2.4e-17 Score=143.57 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=55.9
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKE-----SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~-----~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
.+++||.||.||.+|+.+|| .|.. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45567889999999999999 7999 999999999999999999999999999999999874
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.65 E-value=4.2e-17 Score=135.13 Aligned_cols=59 Identities=31% Similarity=0.439 Sum_probs=55.4
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
.||.|++||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46778999999999999999999999999999999999999999999999999999975
No 18
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=6.1e-17 Score=136.25 Aligned_cols=64 Identities=33% Similarity=0.504 Sum_probs=59.5
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhhh
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHE 172 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~e 172 (764)
.|+.|+.||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 3677899999999999999999999999999999999999999999999999999998776543
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.64 E-value=3.5e-17 Score=134.69 Aligned_cols=58 Identities=36% Similarity=0.659 Sum_probs=53.1
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
+||.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678899999999999999999999999999999999999999999999999999986
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=4.2e-17 Score=137.67 Aligned_cols=63 Identities=29% Similarity=0.485 Sum_probs=58.4
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
..++|+.|++||.+|+.+||..|..++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345677889999999999999999999999999999999999999999999999999999743
No 21
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=6e-17 Score=131.78 Aligned_cols=57 Identities=35% Similarity=0.532 Sum_probs=54.9
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
||.|+.||.+|+.+||..|+.++||+..+|.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 22
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=8e-17 Score=136.19 Aligned_cols=61 Identities=33% Similarity=0.478 Sum_probs=56.9
Q ss_pred CCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 108 KKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 108 kkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
+.|+.|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3456779999999999999999999999999999999999999999999999999999754
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.4e-17 Score=137.78 Aligned_cols=61 Identities=31% Similarity=0.489 Sum_probs=57.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
.+.|+.|++||.+|+.+||..|+.++||+..+|++||.++||+++||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4457788999999999999999999999999999999999999999999999999999864
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-17 Score=137.30 Aligned_cols=62 Identities=23% Similarity=0.452 Sum_probs=58.1
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
.++.|+.|++||.+|+.+||..|+.++||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 34567788999999999999999999999999999999999999999999999999999974
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.63 E-value=8.7e-17 Score=137.19 Aligned_cols=63 Identities=32% Similarity=0.474 Sum_probs=58.8
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
.++.|+.|++||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 345678889999999999999999999999999999999999999999999999999999754
No 26
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.63 E-value=5.2e-17 Score=136.68 Aligned_cols=61 Identities=33% Similarity=0.553 Sum_probs=57.8
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
+|+.|++||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5678899999999999999999999999999999999999999999999999999998654
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.63 E-value=7.2e-17 Score=135.90 Aligned_cols=61 Identities=30% Similarity=0.462 Sum_probs=57.6
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
+||.|++||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678899999999999999999999999999999999999999999999999999998653
No 28
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.62 E-value=4.6e-17 Score=136.90 Aligned_cols=63 Identities=27% Similarity=0.551 Sum_probs=58.7
Q ss_pred CCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 108 KKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 108 kkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
++|+.|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 357788999999999999999999999999999999999999999999999999999986543
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1e-16 Score=131.54 Aligned_cols=58 Identities=31% Similarity=0.458 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999973
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.1e-17 Score=139.25 Aligned_cols=63 Identities=10% Similarity=0.254 Sum_probs=58.7
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcC----CCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKES----PHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~----~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
.+++||.|+.||.+|+.+||..|..+ +||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 34567888999999999999999999 9999999999999999999999999999999999743
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=7.7e-17 Score=134.68 Aligned_cols=60 Identities=28% Similarity=0.566 Sum_probs=56.9
Q ss_pred CCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 108 KKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 108 kkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
++||.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 457788999999999999999999999999999999999999999999999999999864
No 32
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.62 E-value=8.1e-17 Score=144.43 Aligned_cols=64 Identities=23% Similarity=0.398 Sum_probs=56.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
...++.|++||.+|+.+||..|+.++||+..+|++||++|||+++||++||||||+|+|+.+.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 4456778999999999999999999999999999999999999999999999999999976543
No 33
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.61 E-value=8.7e-17 Score=132.11 Aligned_cols=59 Identities=25% Similarity=0.508 Sum_probs=48.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~K 165 (764)
+++|+.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678889999999999999999999999999999999999999999999999999976
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.61 E-value=9.5e-17 Score=139.69 Aligned_cols=61 Identities=31% Similarity=0.490 Sum_probs=53.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
.++||.|++||.+|+.+||..|..++||+..+|++||.+|||+++||++||||||+|+||.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 3457788999999999999999999999999999999999999999999999999999974
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=128.59 Aligned_cols=57 Identities=39% Similarity=0.543 Sum_probs=54.3
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~K 165 (764)
+|+.|++||.+|+..||..|+.++||+..++.+||..+||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356789999999999999999999999999999999999999999999999999976
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.61 E-value=9.7e-17 Score=141.57 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=54.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
++.||.|++||.+|+.+||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3457788999999999999999999999999999999999999999999999999999974
No 37
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=134.82 Aligned_cols=63 Identities=35% Similarity=0.588 Sum_probs=58.7
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
.+++|+.|++||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 445677899999999999999999999999999999999999999999999999999999743
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=2.6e-16 Score=133.77 Aligned_cols=59 Identities=22% Similarity=0.403 Sum_probs=55.6
Q ss_pred CCCcccCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 110 RKKYHRHTAEQIREMEALFKE-SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~-~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
.+.|++||.+|+.+||..|+. ++||+..+|.+||+++||+++||++||||||+|+|+.+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356789999999999999996 99999999999999999999999999999999999865
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=2.6e-16 Score=134.20 Aligned_cols=60 Identities=22% Similarity=0.404 Sum_probs=56.2
Q ss_pred CCCcccCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 110 RKKYHRHTAEQIREMEALFKE-SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~-~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
+++|++||.+|+.+||..|+. ++||+..+|.+||.++||+++||++||||||+|+|+.+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 467799999999999999994 999999999999999999999999999999999998653
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.60 E-value=2.2e-16 Score=127.99 Aligned_cols=54 Identities=33% Similarity=0.479 Sum_probs=51.0
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
|.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999974
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.60 E-value=1.6e-16 Score=130.28 Aligned_cols=57 Identities=30% Similarity=0.559 Sum_probs=50.7
Q ss_pred CcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 112 KYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 112 ~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468999999999999999999999999999999999999999999999999999754
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=135.99 Aligned_cols=59 Identities=25% Similarity=0.618 Sum_probs=54.8
Q ss_pred CcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 112 KYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 112 ~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
+|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 45679999999999999999999999999999999999999999999999999976543
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=3.1e-16 Score=140.79 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=55.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
.+.|+.|+.||.+|+.+||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 345677899999999999999999999999999999999999999999999999999998654
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=4.2e-16 Score=139.44 Aligned_cols=65 Identities=28% Similarity=0.444 Sum_probs=60.7
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------CCcceEeecccchhhHHHHHHHh
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLG---------------LAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~Lg---------------LserQVkvWFQNRRak~Kr~q~r 170 (764)
.+++||.|+.||++|+.+||..|+.++||+..+|++||.+|| |+++||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456678899999999999999999999999999999999999 99999999999999999987654
No 45
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-16 Score=130.98 Aligned_cols=60 Identities=28% Similarity=0.520 Sum_probs=56.7
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677899999999999999999999999999999999999999999999999999997543
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=4.1e-16 Score=134.35 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=54.2
Q ss_pred cccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 113 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 113 RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
|++||.+|+.+||..|..++||+..+|++||+.+||+++||++||||||+|+|+.+.+
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999999999976544
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=5.5e-16 Score=131.96 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=57.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKE---SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
++.|+.|++|+.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 455777899999999999999976 99999999999999999999999999999999999754
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-16 Score=132.41 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=57.1
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
.++.|+.||.+|+.+||..|+.++||+..+|++||.++||+++||++||||||+|+|+.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 3567899999999999999999999999999999999999999999999999999997544
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=6.5e-16 Score=137.09 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=52.8
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
.+||.+|+.+||..|..++||+..+|.+||..|||+++||++||||||+|||++.+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999997443
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.6e-16 Score=132.28 Aligned_cols=58 Identities=24% Similarity=0.536 Sum_probs=54.7
Q ss_pred CCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 111 KKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 111 r~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
+.|++||.+|+.+||..|..++||+..+|++||+++||+++||++||||||+|+|+..
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 3478999999999999999999999999999999999999999999999999999744
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.55 E-value=1.2e-15 Score=129.82 Aligned_cols=61 Identities=26% Similarity=0.513 Sum_probs=57.1
Q ss_pred CCCcccCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 110 RKKYHRHTAEQIREMEALF---KESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F---~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
||.|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|+...+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5678999999999999999 999999999999999999999999999999999999975544
No 52
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.55 E-value=5.7e-16 Score=149.13 Aligned_cols=62 Identities=26% Similarity=0.498 Sum_probs=55.3
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
.+++||.|++||.+|+.+||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667789999999999999999999999999999999999999999999999999999964
No 53
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.3e-15 Score=135.31 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=59.9
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHh---------------------CCCcceEeecccchhhHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQL---------------------GLAPRQVKFWFQNRRTQI 164 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~L---------------------gLserQVkvWFQNRRak~ 164 (764)
.+++||.|++||+.|+.+||+.|..++||+..+|++||.+| .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678889999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHh
Q 004271 165 KTIQER 170 (764)
Q Consensus 165 Kr~q~r 170 (764)
|+++..
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 976543
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-15 Score=131.57 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=58.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhh
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKE---SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERH 171 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~ 171 (764)
.++||+|++|+.+|+..||..|.+ ++||+..+|++||.++||+++||++||||||+|+|+...+.
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 345677899999999999999977 69999999999999999999999999999999999765543
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=6.7e-16 Score=131.71 Aligned_cols=57 Identities=35% Similarity=0.523 Sum_probs=52.9
Q ss_pred CCCcccCCHHHHHHHHHhh-hcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 110 RKKYHRHTAEQIREMEALF-KESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F-~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
.+.+.+++.+|+.+||..| +.++||+..+|++||+++||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 3445678889999999999 99999999999999999999999999999999999995
No 56
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.53 E-value=1e-15 Score=149.44 Aligned_cols=61 Identities=26% Similarity=0.477 Sum_probs=54.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
+++||+|++||.+|+.+||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4667889999999999999999999999999999999999999999999999999999963
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.53 E-value=2.3e-15 Score=132.21 Aligned_cols=61 Identities=26% Similarity=0.513 Sum_probs=56.4
Q ss_pred CCCcccCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 110 RKKYHRHTAEQIREMEALF---KESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F---~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
||.|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5678999999999999999 999999999999999999999999999999999999975443
No 58
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.53 E-value=2e-15 Score=123.63 Aligned_cols=55 Identities=38% Similarity=0.556 Sum_probs=52.8
Q ss_pred CcccCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 112 KYHRHTAEQIREMEALFKE---SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 112 ~RtrfT~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
++++||.+|+.+||..|.. ++||+..+|.+||+++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3579999999999999999 999999999999999999999999999999999986
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.1e-15 Score=131.77 Aligned_cols=57 Identities=23% Similarity=0.503 Sum_probs=52.9
Q ss_pred cccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 113 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 113 RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
+.+||.+|+.+||..|..++||+..+|++||+++||+++||++||||||+|+|+...
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 345899999999999999999999999999999999999999999999999986443
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.3e-15 Score=126.42 Aligned_cols=57 Identities=25% Similarity=0.483 Sum_probs=54.5
Q ss_pred CCCcccCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 110 RKKYHRHTAEQIREMEALF---KESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F---~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
++.|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+||
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 5677899999999999999 99999999999999999999999999999999999985
No 61
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.52 E-value=1.6e-15 Score=148.66 Aligned_cols=64 Identities=28% Similarity=0.457 Sum_probs=51.9
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQE 169 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~ 169 (764)
++++||+|++||.+|+.+||..|..++||+..+|.+||+++||+++||++||||||+|+||...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4567788999999999999999999999999999999999999999999999999999997543
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.52 E-value=2e-15 Score=132.92 Aligned_cols=59 Identities=36% Similarity=0.507 Sum_probs=55.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKE---SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~K 165 (764)
.+++++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 345666899999999999999999 99999999999999999999999999999999987
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.51 E-value=1.4e-15 Score=137.55 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=53.7
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHH------------------hC---CCcceEeecccchhhHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQ------------------LG---LAPRQVKFWFQNRRTQI 164 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~------------------Lg---LserQVkvWFQNRRak~ 164 (764)
++++||.|+.||+.|+.+||..|..++||+..+|++||.+ || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 5677889999999999999999999999999999999999 88 99999999999999998
Q ss_pred HHHHH
Q 004271 165 KTIQE 169 (764)
Q Consensus 165 Kr~q~ 169 (764)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 86543
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.51 E-value=2e-15 Score=131.88 Aligned_cols=58 Identities=36% Similarity=0.512 Sum_probs=53.5
Q ss_pred CCCcccCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 110 RKKYHRHTAEQIREMEALFKE---SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
+++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 455677999999999999999 9999999999999999999999999999999999974
No 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=4.5e-15 Score=124.36 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=55.4
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKE-SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~-~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~K 165 (764)
.+++||.||.|+.+|+..|+..|+. ++||+...|++||.++||++++||+||||||.-.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3456788999999999999999999 99999999999999999999999999999997544
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.51 E-value=4.2e-15 Score=124.40 Aligned_cols=52 Identities=33% Similarity=0.505 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 117 TAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 117 T~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
|.+|+.+||..|..++||+..+|.+||+.+||+++||++||||||+|+|+.+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 7899999999999999999999999999999999999999999999999754
No 67
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.50 E-value=4.3e-15 Score=143.54 Aligned_cols=61 Identities=31% Similarity=0.615 Sum_probs=57.7
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
++++||+|++||.+|+.+||..|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3466778899999999999999999999999999999999999999999999999999985
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-15 Score=129.07 Aligned_cols=58 Identities=34% Similarity=0.466 Sum_probs=53.7
Q ss_pred cccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 113 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 113 RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
...+|..|+.+||..|+.++||+..+|.+||+++||+++||++||||||+|+|+++..
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 3568999999999999999999999999999999999999999999999999975543
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=3.5e-15 Score=124.60 Aligned_cols=49 Identities=41% Similarity=0.625 Sum_probs=46.2
Q ss_pred HHHHHHHHHhh-hcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 118 AEQIREMEALF-KESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 118 ~~Ql~~LE~~F-~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
+.|+.+||+.| ..++||+..+|.+||++|||+++|||+||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 35899999999 67999999999999999999999999999999999985
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.45 E-value=1.6e-14 Score=140.33 Aligned_cols=61 Identities=30% Similarity=0.524 Sum_probs=56.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 107 KKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 107 rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
+++||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3456678999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-14 Score=121.35 Aligned_cols=52 Identities=13% Similarity=0.306 Sum_probs=49.1
Q ss_pred cCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHH
Q 004271 115 RHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKT 166 (764)
Q Consensus 115 rfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr 166 (764)
.++.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999998775
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.43 E-value=1.9e-14 Score=140.65 Aligned_cols=63 Identities=29% Similarity=0.357 Sum_probs=54.5
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ 168 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q 168 (764)
.+++||.|+.||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 455677889999999999999999999999999999999999999999999999999998643
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=9.6e-14 Score=116.68 Aligned_cols=58 Identities=29% Similarity=0.376 Sum_probs=50.3
Q ss_pred ccCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHhh
Q 004271 114 HRHTAEQIREMEALFK---ESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERH 171 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~---~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r~ 171 (764)
.+|+.+|+..||..|. .++||+..+|.+||.++||+++||++||||||+|+|+...++
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 3799999999999999 999999999999999999999999999999999999754443
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.29 E-value=2.2e-13 Score=136.80 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=53.9
Q ss_pred cCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------------CCcceEeecccchhhHH
Q 004271 106 KKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLG---------------------LAPRQVKFWFQNRRTQI 164 (764)
Q Consensus 106 ~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~Lg---------------------LserQVkvWFQNRRak~ 164 (764)
.+++||.|+.||+.|+.+||+.|..++||+..+|++||..+| |++.||++||||||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 466788999999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q 004271 165 KT 166 (764)
Q Consensus 165 Kr 166 (764)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.28 E-value=5.8e-11 Score=120.65 Aligned_cols=200 Identities=10% Similarity=0.145 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceEEcCCC--CccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHH-
Q 004271 274 KSRIMELVNQGMEELKKMATAGGPLWIRSLET--GREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLV- 350 (764)
Q Consensus 274 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~--~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV- 350 (764)
....++++++|+++++++... .--|....+. |..+ |.+..+. .|. .-|..++|...+..+.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~v-----y~~~~~~-------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTV-----YTIEVPF-------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEE-----EEEEETT-------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEE-----EEEecCC-------CCc---eEEEEEEecCCHHHHHH
Confidence 467789999999999999863 3479665321 2111 2222211 121 3488899999999998
Q ss_pred HHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcc--cCcccCceeEEEEeeeecCCCcEEEEEEec
Q 004271 351 QSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQML--TPMVPTREVYFVRYCKQLSAEQWAIVDVSI 428 (764)
Q Consensus 351 e~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~--SPLvp~Re~~flRyckq~~~g~w~VvDvS~ 428 (764)
++|+|.+...+--+. +..+++|+.+..+ + .+ +-++..+ .++++.|||.++|+++.. ++.++|+-.|+
T Consensus 84 ~~~~d~~~r~~Wd~~-~~~~~vle~~~~~-------t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv 152 (229)
T 1em2_A 84 EVILQPERMVLWNKT-VTACQILQRVEDN-------T-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIAT 152 (229)
T ss_dssp HTTTCHHHHTTTCTT-EEEEEEEEEETTT-------E-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEEC
T ss_pred HHHhCccchhhcccc-cceEEEEEecCCC-------e-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecc
Confidence 777766543333333 2445888887643 2 23 3346554 578999999999999998 56699999999
Q ss_pred cCccccccCccccccccCCceeeeeCC--CCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 004271 429 DKVEENIDASLAKCRKRPSGCIVEDKS--NGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCERL 504 (764)
Q Consensus 429 d~~~~~~~~~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cerl 504 (764)
+.-.--+...++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-.+++.|+.+|+.+
T Consensus 153 ~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 153 SHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp CCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 743322244689999999999999987 67899999999987654 55 67888888888889999999998864
No 76
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.28 E-value=3.1e-11 Score=122.11 Aligned_cols=196 Identities=13% Similarity=0.189 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEcC-C-CCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHH
Q 004271 275 SRIMELVNQGMEELKKMATAGGPLWIRSL-E-TGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQS 352 (764)
Q Consensus 275 ~~~~~lA~~Am~El~~la~~~eplWi~~~-~-~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~ 352 (764)
--...+|++||+|++++.+ ++.-|.... + .|..+ |.+.+| +. +-.=|..++|...+..+.+.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~v-----y~~~~~---------~~-g~~~k~~~~v~~~~~~v~~~ 73 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS-NQEGWKKESQQDNGDKV-----MSKVVP---------DV-GKVFRLEVVVDQPMERLYEE 73 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCEE-----EEEECS---------SS-CEEEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcEE-----EEEEcC---------CC-ceEEEEEEEEcCCHHHHHHH
Confidence 3456899999999999976 345797652 2 33221 222221 11 23459999999999999999
Q ss_pred h-cC---hhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhh-hcccCcccCceeEEEEeeeecCCCcEEEEEEe
Q 004271 353 F-TD---VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAEL-QMLTPMVPTREVYFVRYCKQLSAEQWAIVDVS 427 (764)
Q Consensus 353 l-mD---~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael-~v~SPLvp~Re~~flRyckq~~~g~w~VvDvS 427 (764)
| +| +.+|-..|-. +++++.++.. -.+.|... ..+.++++.|||.++||.++. +|.++|+-.|
T Consensus 74 l~~d~~~r~~Wd~~~~~----~~vle~~~~~--------t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~S 140 (221)
T 3p0l_A 74 LVERMEAMGEWNPNVKE----IKVLQKIGKD--------TFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMA 140 (221)
T ss_dssp HTTTGGGTTTSCTTCSE----EEEEEECSSS--------EEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEE
T ss_pred HHhccchhhhcCcchhe----EEEEEecCCC--------eEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEe
Confidence 8 46 4667766544 4777776542 24555332 223568999999999999986 6889999999
Q ss_pred ccCccccccCccccccccCCceeeeeCCCC--eeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 004271 428 IDKVEENIDASLAKCRKRPSGCIVEDKSNG--HCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCER 503 (764)
Q Consensus 428 ~d~~~~~~~~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cer 503 (764)
++.-.--+...++|...+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+.-.++..|+++|++
T Consensus 141 v~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~ 214 (221)
T 3p0l_A 141 TDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLES 214 (221)
T ss_dssp CCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred ccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 873221113468999999999999999988 999999999987765 44 5667777778888899999988873
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.28 E-value=1.2e-11 Score=127.30 Aligned_cols=194 Identities=13% Similarity=0.179 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEcCCC-CccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHH-HHhcC
Q 004271 278 MELVNQGMEELKKMATAGGPLWIRSLET-GREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLV-QSFTD 355 (764)
Q Consensus 278 ~~lA~~Am~El~~la~~~eplWi~~~~~-~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~lmD 355 (764)
-.+++.++.|+++.+.....-|....+. |..+ |.+.. +.|...-.=|..++|...+.+++ ++|.|
T Consensus 31 ~~~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V---------~~k~~----~~~~~~~~~K~~~~v~~~~~~v~~~ll~d 97 (237)
T 2pso_A 31 HTYLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL---------AFKKV----GDGNPLKLWKASVEVEAPPSVVLNRVLRE 97 (237)
T ss_dssp -CCCCCHHHHHHHHHHHHCCSCEEECCSSSCEE---------EEECC----CSSCCCCEEEEEEEESSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCEEEecCCCeEE---------EEEEc----CCCCCcEEEEEEEEEcCChHHHHHHHHhh
Confidence 3345678888887776545569765532 2222 21111 12434445688888887777764 78999
Q ss_pred hhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeee-cCCCcEEEEEEeccCcccc
Q 004271 356 VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQ-LSAEQWAIVDVSIDKVEEN 434 (764)
Q Consensus 356 ~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq-~~~g~w~VvDvS~d~~~~~ 434 (764)
+.+|-..|-.+ ++++.|+.. -.++|..+..+.| ++.|||.++||.++ +++|.++||-.|++.-. .
T Consensus 98 r~~Wd~~~~~~----~vle~id~~--------~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~ 163 (237)
T 2pso_A 98 RHLWDEDFVQW----KVVETLDRQ--------TEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-A 163 (237)
T ss_dssp GGGTCTTBCCC----EEEEEEETT--------EEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-C
T ss_pred hhhHHhhhceE----EEEEEcCCC--------cEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-C
Confidence 99999887665 999988742 3566776766665 79999999999986 78999999999998432 2
Q ss_pred ccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 004271 435 IDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCER 503 (764)
Q Consensus 435 ~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cer 503 (764)
|...++|+..+++|++|+++.+|.|+|||+-|++.. ..+|.-+..++ .-.+-..+..|+++++.
T Consensus 164 P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~----~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 164 QLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGF----GHLCAAEVARIRNSFQP 227 (237)
T ss_dssp CCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHH----HHHHHHHHHHHHHTTSC
T ss_pred CCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 222789999999999999999999999999999987 45776653333 22233467777755543
No 78
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.19 E-value=3.6e-12 Score=129.70 Aligned_cols=60 Identities=20% Similarity=0.403 Sum_probs=53.6
Q ss_pred ccCCCCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------------CCcceEeecccchhhH
Q 004271 105 NKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLG---------------------LAPRQVKFWFQNRRTQ 163 (764)
Q Consensus 105 ~~rkkrr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~Lg---------------------LserQVkvWFQNRRak 163 (764)
.++++||.|+.|++.|+.+||..|..++||+..+|++||.++| |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3567788999999999999999999999999999999999998 8999999999999986
Q ss_pred H
Q 004271 164 I 164 (764)
Q Consensus 164 ~ 164 (764)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 79
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.13 E-value=1.7e-11 Score=108.51 Aligned_cols=58 Identities=28% Similarity=0.367 Sum_probs=53.2
Q ss_pred cccCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 113 YHRHTAEQIREMEALFKE---SPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 113 RtrfT~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
.+-|+.+++..|+..|.+ ++||+..+|++||+++||+++||++||||||.|+|+...+
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 356899999999999977 9999999999999999999999999999999999976544
No 80
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.02 E-value=2.5e-11 Score=131.88 Aligned_cols=57 Identities=23% Similarity=0.487 Sum_probs=53.5
Q ss_pred CCCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHH
Q 004271 109 KRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165 (764)
Q Consensus 109 krr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~K 165 (764)
.++.++.++.+|+.+||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 355677899999999999999999999999999999999999999999999999876
No 81
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=7.7e-11 Score=99.43 Aligned_cols=45 Identities=22% Similarity=0.499 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhH
Q 004271 119 EQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQ 163 (764)
Q Consensus 119 ~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak 163 (764)
+|+..||..|..+++|+..++.+||..+||++++||+||||||+.
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 689999999999999999999999999999999999999999974
No 82
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=99.00 E-value=2.4e-09 Score=108.73 Aligned_cols=194 Identities=11% Similarity=0.128 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEEeChhhHHHHhc
Q 004271 275 SRIMELVNQGMEELKKMATAGGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVFVDLPKLVQSFT 354 (764)
Q Consensus 275 ~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm 354 (764)
.-+.+.+.++|..+..+ .+.-|-...+. +-.+.|.+.. .+...-.-|..++|...+..|.+.|+
T Consensus 24 ~~~~~~~~e~l~~~~~~---~~~~W~~~~~~--------~gv~vy~~~~-----~~~~~~~~k~~~~v~~~~~~v~~~l~ 87 (224)
T 1jss_A 24 ASISTKLQNTLIQYHSI---EEDEWRVAKKA--------KDVTVWRKPS-----EEFNGYLYKAQGVMDDVVNNVIDHIR 87 (224)
T ss_dssp CTHHHHHHHHHHHHTTS---CGGGCEEEEEE--------TTEEEEEEEC-----SSSSSEEEEEEEEESSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhh---CCCCCEEEEEC--------CCEEEEEEec-----cCCCceEEEEEEEEeCCHHHHHHHHh
Confidence 34555555555555443 35569654321 1122232211 12222345889999999999999999
Q ss_pred Chh---hHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcc-cCcccCceeEEEEeeeecCCCcEEEEEEeccC
Q 004271 355 DVN---QWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQML-TPMVPTREVYFVRYCKQLSAEQWAIVDVSIDK 430 (764)
Q Consensus 355 D~~---~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~-SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~ 430 (764)
|.. +|-..|-.. +.|+.|... -.+.|.-+.-+ -|+|..|||.++|+.++.++| ++|+-+|++.
T Consensus 88 d~~~r~~Wd~~~~~~----~vle~id~~--------~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~h 154 (224)
T 1jss_A 88 PGPWRLDWDRLMTSL----DVLEHFEEN--------CCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEW 154 (224)
T ss_dssp SSTTHHHHCSSEEEE----EEEEECSTT--------EEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCC
T ss_pred CcccccccccceeeE----EEEEEcCCC--------eEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeec
Confidence 965 776665443 777766432 34555555433 457999999999999999877 8889999873
Q ss_pred ccccccCccccccccCCceeeeeCCCC--eeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 004271 431 VEENIDASLAKCRKRPSGCIVEDKSNG--HCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCER 503 (764)
Q Consensus 431 ~~~~~~~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatLqR~cer 503 (764)
-. ....++|...+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+...++..|+.+|+.
T Consensus 155 p~--~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~ 223 (224)
T 1jss_A 155 SE--TRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLRK 223 (224)
T ss_dssp CC--CCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CC--CCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 32 23578999999999999999875 899999999987654 44 4677777888888999999988753
No 83
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.96 E-value=5.5e-09 Score=104.31 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=117.4
Q ss_pred eeeeceeEEE-eChhhHHHHhcC---hhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEE
Q 004271 334 EASRDAGVVF-VDLPKLVQSFTD---VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYF 409 (764)
Q Consensus 334 EAsR~~g~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~f 409 (764)
-.-|..++|. ..+..+.+.|+| ..+|...+-. +++ |.. +|. .++|.++..|.|+ ..|||.+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~----~~v---le~------~~~-~i~~~~~~~p~p~-~~RD~v~ 116 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKE----LYE---QEC------NGE-TVVYWEVKYPFPM-SNRDYVY 116 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEE----EEE---EEE------TTE-EEEEEEECCCTTS-CCEEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhh----EEE---ecc------CCC-EEEEEEEEcCCCC-CCceEEE
Confidence 4669999995 999999999999 5677766433 244 433 232 4788899988886 9999999
Q ss_pred EEeeeecC-CC--cEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchh
Q 004271 410 VRYCKQLS-AE--QWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGL 486 (764)
Q Consensus 410 lRyckq~~-~g--~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~ 486 (764)
+|+++.++ +| .|+|+-.|++.-..-+...++|...+++|++|++..+|.|+||++-|++.. ..+|.- |++..+
T Consensus 117 ~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~ 192 (214)
T 1ln1_A 117 LRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAA 192 (214)
T ss_dssp EEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHH
T ss_pred EEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHH
Confidence 99999875 66 499999998743211135689999999999999999999999999999987 456643 445556
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004271 487 AFGARHWMTTLQLQCER 503 (764)
Q Consensus 487 afgA~rwlatLqR~cer 503 (764)
.-++..++..|+++|+.
T Consensus 193 ~~~~~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 193 KNGVPNFLKDMARACQN 209 (214)
T ss_dssp HTHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHh
Confidence 66788889999988875
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.79 E-value=2e-08 Score=104.98 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=107.3
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccC--cccCceeEEEEeee
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTP--MVPTREVYFVRYCK 414 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SP--Lvp~Re~~flRyck 414 (764)
|..++|...+..|.+.|+|.+.+.+=-+.+ ..++.++-|+.. .++| ++..|+| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~~---------~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDED---------DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEETT---------EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCCC---------eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 888899999999999999986544444443 344777766642 3567 6667775 79999999999998
Q ss_pred e-cCCCc-EEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHH
Q 004271 415 Q-LSAEQ-WAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARH 492 (764)
Q Consensus 415 q-~~~g~-w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~r 492 (764)
. ..+|. ++|+-+|++.-.--+...++|+..+|+||+|+++++|.|+||++-|++ +..++..--.+. |+-=....
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~d--pG~lP~~~~n~~--g~s~~~~~ 235 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQAT--PGVLNYVTTNVA--GLSSEFYT 235 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCC--GGGHHHHHHHHH--TSCCHHHH
T ss_pred eccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeC--CCCCCceEEecc--ccchHHHH
Confidence 7 44775 999999987322112446899999999999999999999999998887 344544333332 22112234
Q ss_pred HHHHHHHHHHH
Q 004271 493 WMTTLQLQCER 503 (764)
Q Consensus 493 wlatLqR~cer 503 (764)
+.++|..+.+.
T Consensus 236 t~~~~~~fl~~ 246 (258)
T 3fo5_A 236 TFKACEQFLLD 246 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44466655554
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.49 E-value=1.6e-06 Score=85.06 Aligned_cols=153 Identities=9% Similarity=0.092 Sum_probs=111.9
Q ss_pred eeeeceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEee
Q 004271 334 EASRDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYC 413 (764)
Q Consensus 334 EAsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyc 413 (764)
-.=|..++|...+.++.+.|+|.+...+--|.+ .-.+||.. . ++ -.++|.++..|-| +..|||.++|+.
T Consensus 27 ~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~----~~~~vle~-~----~~-~~i~y~~~~~p~p-~~~RD~v~~~~~ 95 (189)
T 3qsz_A 27 REFRGEVRLKAAADDVVKVLRDANAFRQWMPDV----AASELLKA-T----DT-EQYHYLDNSAPWP-VSNRDGVYHFTY 95 (189)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE----EEEEEEEE-C----SS-EEEEEEEECCSSS-CCCEEEEEEEEE
T ss_pred EEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc----CEEEEEee-c----CC-ceEEEEEeecCCC-cCCcceEEEEEE
Confidence 356888999999999999999987766666665 34445554 2 12 3556777777665 799999999999
Q ss_pred eecCCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHH
Q 004271 414 KQLSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHW 493 (764)
Q Consensus 414 kq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rw 493 (764)
+...+|...|+=.+.....+ +...++|.+.+++|++|++ .+|.|+||++-|++..- .+| .-|++..+.-+.-..
T Consensus 96 ~~~~~g~~~i~~~~~~~~~P-~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP---~~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 96 EKAGDGAITVRVEAVPDYLP-LRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIP---SWLANQTVVETPFGT 169 (189)
T ss_dssp EECTTSCEEEEEEECTTSSC-CCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSC---HHHHHHTTTHHHHHH
T ss_pred EECCCCeEEEEEEcCCCccC-CCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCC---HHHHHHHHHHHHHHH
Confidence 99888876554333211111 1345889999999999999 99999999999998763 344 345556666677788
Q ss_pred HHHHHHHHHH
Q 004271 494 MTTLQLQCER 503 (764)
Q Consensus 494 latLqR~cer 503 (764)
+..|+++|+.
T Consensus 170 l~~L~k~~~~ 179 (189)
T 3qsz_A 170 LKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhh
Confidence 9999988875
No 86
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.36 E-value=3e-06 Score=87.32 Aligned_cols=200 Identities=14% Similarity=0.280 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHhhcC---CCCceEEcCCCCccccChHHHHhhccCcCCCCCCCCCceeeeeceeEEE-eChhhHHH
Q 004271 276 RIMELVNQGMEELKKMATA---GGPLWIRSLETGREILNYDEYVKEFSAENSSNGKSNRSIEASRDAGVVF-VDLPKLVQ 351 (764)
Q Consensus 276 ~~~~lA~~Am~El~~la~~---~eplWi~~~~~~~e~Ln~~eY~~~F~~~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe 351 (764)
.+.+++...+.|.+..+.. +..-|....+.+ -.+.|.+.. ...|...-.=|..++|. ..+..+.+
T Consensus 23 ~~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~--------gv~vy~~~~---~~~g~~~~~~K~~~~~~~~~~~~v~~ 91 (255)
T 2e3n_A 23 RFVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEG--------EMKVYRREV---EENGIVLDPLKATHAVKGVTGHEVCN 91 (255)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCTTCTTEEEEEEET--------TEEEEEECC---EETTEECCCEEEEEEEETCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCC--------CEEEEEEEc---CCCCceeeeEEEEEEEcCCCHHHHHH
Confidence 3455555666666665543 335686543211 123332221 00122111246566665 78999999
Q ss_pred HhcC---hhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecC----C--CcEE
Q 004271 352 SFTD---VNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLS----A--EQWA 422 (764)
Q Consensus 352 ~lmD---~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~----~--g~w~ 422 (764)
.|+| +.+|-..+ ..+++++.|..+ + .+.|..+..|.|+ ..|||.++|+.++.. + +.|+
T Consensus 92 ~l~d~~~r~~Wd~~~----~~~~vle~i~~~------~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~ 158 (255)
T 2e3n_A 92 YFWNVDVRNDWETTI----ENFHVVETLADN------A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWI 158 (255)
T ss_dssp HHHCGGGHHHHCCSE----EEEEEEEEEETT------E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEE
T ss_pred HHhCcchHhhhhhhc----ceeEEEEEcCCC------C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEE
Confidence 9999 45666553 445887777542 2 6788888888886 889999999999873 3 5999
Q ss_pred EEEEeccCccccccCccccccc---cCCceeeeeCCC--------CeeEEEEEEeeeeccccccccchhhhcchhhHHHH
Q 004271 423 IVDVSIDKVEENIDASLAKCRK---RPSGCIVEDKSN--------GHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGAR 491 (764)
Q Consensus 423 VvDvS~d~~~~~~~~~~~~~~~---~PSGclIq~~~n--------G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~ 491 (764)
|+..|++.-..-+...++|... +.+|++|++..+ +.|+|||+-|++..- .+|. -+++.....+.-
T Consensus 159 i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~---~lvn~~~~~~~~ 234 (255)
T 2e3n_A 159 VCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPA---SVLRAVAKREYP 234 (255)
T ss_dssp EEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCH---HHHHHHHHHHHH
T ss_pred EEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCH---HHHHHHHhcccc
Confidence 9999997432112335788884 678999998733 579999999998763 3554 344555667777
Q ss_pred HHHHHHHHHHHH
Q 004271 492 HWMTTLQLQCER 503 (764)
Q Consensus 492 rwlatLqR~cer 503 (764)
..+..|+++++.
T Consensus 235 ~~l~~L~k~v~~ 246 (255)
T 2e3n_A 235 KFLKRFTSYVQE 246 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999888875
No 87
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.32 E-value=3.9e-08 Score=73.33 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=18.8
Q ss_pred ceEeecccchhhHHHHHHHhhh
Q 004271 151 RQVKFWFQNRRTQIKTIQERHE 172 (764)
Q Consensus 151 rQVkvWFQNRRak~Kr~q~r~e 172 (764)
+||+|||||||+|||+++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999998766543
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.49 E-value=0.0047 Score=62.26 Aligned_cols=195 Identities=11% Similarity=0.051 Sum_probs=117.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhh-
Q 004271 523 LAGRKSILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFL- 601 (764)
Q Consensus 523 ~~Gr~s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL- 601 (764)
...+..++++|+..+..|-.-+.. ..+|.... ..++|+|..+...+ .+ +.++ ++..-+++||..||++|
T Consensus 18 ~~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~---~~-~~~~--k~~~~v~~~~~~v~~~l~ 87 (231)
T 2r55_A 18 LYFQSMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVE---FP-GNLY--RGEGIVYGTLEEVWDCVK 87 (231)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSS---SS-SEEE--EEEEEESSCHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCC---CC-CcEE--EEEEEECCCHHHHHHHHH
Confidence 344556999999999999876643 36898773 34789999887632 22 3444 44445599999999999
Q ss_pred -hcccccchhhhhcCCCccceeeecccCCCCCCeEEEEe-eec-------cCCCeEEEEeeecCCcceEE-EEccccccc
Q 004271 602 -RDEAHRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQT-MKS-------KENSMWLLQDSYTNAYESMV-VYAPVDITG 671 (764)
Q Consensus 602 -rd~~~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsllr-~~~-------~~~~~liLQes~td~sgs~v-VyAPvD~~~ 671 (764)
.|.+.|.+||-..- ..+.+..|. .... |++ +.. .+++..+|.-...+..|+++ +.-.||-+.
T Consensus 88 ~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~ 159 (231)
T 2r55_A 88 PAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPL 159 (231)
T ss_dssp C--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTT
T ss_pred hhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCC
Confidence 99999999996332 233344442 1222 333 221 23677777765555567775 567787654
Q ss_pred ccccccCCCCCC--ccccCCccEEccCCCCCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh--Hhhh
Q 004271 672 MQSVITGCDSSN--IAILPSGFSILPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS--VNTL 747 (764)
Q Consensus 672 m~~vm~G~Ds~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t--v~~l 747 (764)
+-. -+.+ +.++|+||.|-|... ..++|.+|.-+|+=.... .+..+.. +..-
T Consensus 160 ~P~-----~~~~VR~~~~~~g~~i~p~~~---------------~~~~t~vt~~~~~Dp~G~-----iP~~lvn~~~~~~ 214 (231)
T 2r55_A 160 CPP-----KPGFVRGFNHPCGCFCEPLPG---------------EPTKTNLVTFFHTDLSGY-----LPQNVVDSFFPRS 214 (231)
T ss_dssp SCC-----CTTCEEEEECSEEEEEEECC-----------------CCCEEEEEEECEECCSS-----CCHHHHHHHHHHH
T ss_pred CCC-----CCCCEEEEEEeeEEEEEEeCC---------------CCCcEEEEEEEEeCCCCC-----ccHHHHHHHHhHh
Confidence 311 1233 357999999999641 125788888777655432 1122211 2222
Q ss_pred hHHHHHHHHHhhc
Q 004271 748 ISCTLRNIKTSLQ 760 (764)
Q Consensus 748 i~~tv~~Ik~Al~ 760 (764)
+-.++++++.++.
T Consensus 215 ~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 215 MTRFYANLQKAVK 227 (231)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3347777777664
No 89
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=97.01 E-value=0.012 Score=57.18 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=96.4
Q ss_pred CCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeecccCC
Q 004271 550 HVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQ 629 (764)
Q Consensus 550 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~ 629 (764)
++|.... ..++|+|.+++.. |.+ +..-+....++.||+.||++|.|.+.|.+||-.+ .+.--|.+
T Consensus 3 ~~W~~~~--~~~gv~v~~~~~~---~~~---~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~-----~~~~vle~-- 67 (189)
T 3qsz_A 3 DGWSLAK--DAEGIKVYVRNVE---GSP---LREFRGEVRLKAAADDVVKVLRDANAFRQWMPDV-----AASELLKA-- 67 (189)
T ss_dssp CCCEEEE--EETTEEEEEECCT---TCS---SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE-----EEEEEEEE--
T ss_pred CCCEEEE--cCCCEEEEEEeCC---CCC---eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc-----CEEEEEee--
Confidence 5798663 3478999998862 221 2235667777899999999999999999999533 33333333
Q ss_pred CCCCeEEEEeeecc----CCCeEEEEeeecCCcceEEEEcccccccccccccCCCCCC--ccccCCccEEccCCCCCCCC
Q 004271 630 DRGNAVNIQTMKSK----ENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITGCDSSN--IAILPSGFSILPDGLESRPL 703 (764)
Q Consensus 630 ~~gn~vsllr~~~~----~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~Ds~~--v~lLPSGF~I~Pdg~~~~~~ 703 (764)
+.+..|.-...+.. +++..++.....+..|.+++..-.+-+.+ ...+.+ +..+++||.|-| +.
T Consensus 68 ~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~----- 136 (189)
T 3qsz_A 68 TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA----- 136 (189)
T ss_dssp CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS-----
T ss_pred cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC-----
Confidence 22333333333322 24555555544444465544332211110 011233 457888888888 51
Q ss_pred ccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh--HhhhhHHHHHHHHHhhc
Q 004271 704 VITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS--VNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 704 ~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al~ 760 (764)
++|.+|.-+|+=.... .+..+.. +...+-.++++++.++.
T Consensus 137 ------------~~t~vt~~~~~dp~G~-----iP~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 ------------DGVDVTYQMHASPGGS-----IPSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp ------------SSEEEEEEEEECSCSS-----SCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred ------------CeEEEEEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688887777655433 2233332 23344457777777664
No 90
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=96.92 E-value=0.023 Score=57.22 Aligned_cols=192 Identities=6% Similarity=0.056 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHH-Hhhhccc
Q 004271 527 KSILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLF-DFLRDEA 605 (764)
Q Consensus 527 ~s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf-~fLrd~~ 605 (764)
+.-++.++.....|-.-+. ...+|... ....++++|.++... + .|.+. ....-+++||..|| ++|.|.+
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~-~~~~~g~~vy~~~~~---~--~g~~~--k~~~~v~~~~~~v~~~~~~d~~ 90 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFE-KNNEYGDTVYTIEVP---F--HGKTF--ILKTFLPCPAELVYQEVILQPE 90 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEE-EECTTCCEEEEEEET---T--TEEEE--EEEEEESSCHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEE-EecCCCCEEEEEecC---C--CCceE--EEEEEecCCHHHHHHHHHhCcc
Confidence 4555555555555554443 24589876 333357888887652 1 24444 34444599999999 9999999
Q ss_pred ccchhhhhcCCCccceeeecccCCCCCCeEEEEeeec-------cCCCeEEEEeeecCCcceEEEEcccccccccccccC
Q 004271 606 HRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKS-------KENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITG 678 (764)
Q Consensus 606 ~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsllr~~~-------~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G 678 (764)
.|.+||-..- .++.+.+|. .++.| +..+.. .+++.+++.-...+..+-++++..|+-+.+-
T Consensus 91 ~r~~Wd~~~~--~~~vle~~~----~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P----- 158 (229)
T 1em2_A 91 RMVLWNKTVT--ACQILQRVE----DNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP----- 158 (229)
T ss_dssp HHTTTCTTEE--EEEEEEEET----TTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC-----
T ss_pred chhhcccccc--eEEEEEecC----CCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC-----
Confidence 9999995332 133344442 22333 222221 1267777766555544455566677665431
Q ss_pred CCCCC--ccccCCccEEccCCCCCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchH-Hh-HhhhhHHHHHH
Q 004271 679 CDSSN--IAILPSGFSILPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESV-DS-VNTLISCTLRN 754 (764)
Q Consensus 679 ~Ds~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv-~t-v~~li~~tv~~ 754 (764)
.-+.+ +.++++||.|-|... ..++|.+|.-+|+=.... + +..+ .. +...+-.++++
T Consensus 159 ~~~~~VR~~~~~~g~~i~p~~~---------------~~~~t~vt~~~~~Dp~G~----i-P~~l~n~~~~~~~~~~~~~ 218 (229)
T 1em2_A 159 PTHKYVRGENGPGGMIVLKSAS---------------NPRVCTFVWILNTDLKGR----L-PRYLIHQSLAATMFEFAFH 218 (229)
T ss_dssp CCTTSEECEECSEEEEEEECSS---------------CTTCEEEEEEECEECCSS----S-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeeeecccEEEEEecCC---------------CCCcEEEEEEEEECCCCC----C-CHHHHHHHHHHHHHHHHHH
Confidence 11222 457999999999541 014688888777655442 1 2232 22 23334457777
Q ss_pred HHHhhc
Q 004271 755 IKTSLQ 760 (764)
Q Consensus 755 Ik~Al~ 760 (764)
++.++.
T Consensus 219 Lr~~~~ 224 (229)
T 1em2_A 219 LRQRIS 224 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 91
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.90 E-value=0.038 Score=55.29 Aligned_cols=192 Identities=13% Similarity=0.150 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhh-hcc
Q 004271 526 RKSILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFL-RDE 604 (764)
Q Consensus 526 r~s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL-rd~ 604 (764)
...-.++++.-+..+..-+.. ..+|.... ...++|.|.+++. ++. |.++ ++..-+++||+.||++| .|.
T Consensus 9 ~~~y~~~~~~~~~~~l~~~~~--~~gW~~~~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 9 ELAYLQQGEEAMQKALGILSN--QEGWKKES-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--CTTCEEEE-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCCCeEee-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 345566777766666655543 56898762 1336788988874 332 4454 44455699999999999 588
Q ss_pred cccchhhhhcCCCccceeeecccCCCCCCeEEEEeeec------cCCCeEEEEeeecCCcceEEEE-ccccccccccccc
Q 004271 605 AHRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMKS------KENSMWLLQDSYTNAYESMVVY-APVDITGMQSVIT 677 (764)
Q Consensus 605 ~~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsllr~~~------~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~ 677 (764)
+.|.+||-..- ..+.+-+|.. +..|--..... .+++..+|.-...+. +.+++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~~~----~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P---- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKIGK----DTFITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLAGMATDFGNMP---- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEECSS----SEEEEEEEECC---CCSCCEEEEEEEEEEECS-SCEEECCEECCCTTSC----
T ss_pred chhhhcCcchh--eEEEEEecCC----CeEEEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEEEEeccCCCCC----
Confidence 89999995332 2344444422 22222211111 136777777655543 555554 345543321
Q ss_pred CCCCCCc--cccCCccEEccCCCCCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh--H-hhhhHHHH
Q 004271 678 GCDSSNI--AILPSGFSILPDGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS--V-NTLISCTL 752 (764)
Q Consensus 678 G~Ds~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t--v-~~li~~tv 752 (764)
.-+.+| .++++||.|-|.+. + ..+|.+|.-+|+=.... .+.++.. + ..++ .++
T Consensus 148 -~~~g~VR~~~~~~g~~i~p~~~-------~--------~~~t~vt~~~~~Dp~G~-----iP~~lvn~~~~~~~~-~~~ 205 (221)
T 3p0l_A 148 -EQKGVIRAEHGPTCMVLHPLAG-------S--------PSKTKLTWLLSIDLKGW-----LPKSIINQVLSQTQV-DFA 205 (221)
T ss_dssp -CCTTSEECEECSCEEEEEEETT-------E--------EEEEEEEEEECEECCSS-----CCHHHHHHHHHHHHH-HHH
T ss_pred -CCCCeEEEeccceEEEEEECCC-------C--------CCcEEEEEEEEecCCCC-----CCHHHHHHHHHHHHH-HHH
Confidence 113343 57999999999652 0 13688888887755433 2233322 2 2333 488
Q ss_pred HHHHHhhc
Q 004271 753 RNIKTSLQ 760 (764)
Q Consensus 753 ~~Ik~Al~ 760 (764)
+.++.++.
T Consensus 206 ~~Lr~~~~ 213 (221)
T 3p0l_A 206 NHLRKRLE 213 (221)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 88888876
No 92
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.61 E-value=0.026 Score=56.75 Aligned_cols=172 Identities=13% Similarity=0.167 Sum_probs=100.3
Q ss_pred CCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeecccC
Q 004271 549 YHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKG 628 (764)
Q Consensus 549 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g 628 (764)
..+|.... ..++|+|.++...+. .|-+. +...-+++||+.||++|.|...|.+||-... ..+.+-+|
T Consensus 42 ~~~W~~~~--~~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~--~~~vle~i--- 108 (224)
T 1jss_A 42 EDEWRVAK--KAKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWRLDWDRLMT--SLDVLEHF--- 108 (224)
T ss_dssp GGGCEEEE--EETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTHHHHCSSEE--EEEEEEEC---
T ss_pred CCCCEEEE--ECCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCccccccccccee--eEEEEEEc---
Confidence 56898662 237899999865321 23443 4455569999999999999999999995332 12333344
Q ss_pred CCCCCeEEEEeeec------cCCCeEEEEeeecCCcceEEEEcccccccccccccCCCCCCc--cccCCccEEccCCCCC
Q 004271 629 QDRGNAVNIQTMKS------KENSMWLLQDSYTNAYESMVVYAPVDITGMQSVITGCDSSNI--AILPSGFSILPDGLES 700 (764)
Q Consensus 629 ~~~gn~vsllr~~~------~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~Ds~~v--~lLPSGF~I~Pdg~~~ 700 (764)
+..+.|--..... .+++.+++.-...+..|.+++.-.||-+.+ .+.+| .++++||.|-|...
T Consensus 109 -d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~g~VR~~~~~~g~~i~p~~~-- 178 (224)
T 1jss_A 109 -EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RPEFVRGYNHPCGWFCVPLKD-- 178 (224)
T ss_dssp -STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CTTSEECEECSEEEEEEEETT--
T ss_pred -CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CCCCEEEEecccEEEEEEcCC--
Confidence 2223333332221 236777776644455666666677776653 13444 47999999999641
Q ss_pred CCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh-HhhhhHHHHHHHHHhhc
Q 004271 701 RPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS-VNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 701 ~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 760 (764)
+ ...|.+|.-+|+=.... +...-|.. +-..+-.+++.++.++.
T Consensus 179 -----~--------~~~t~vt~~~~~Dp~G~----iP~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 179 -----S--------PSQSLLTGYIQTDLRGM----IPQSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp -----E--------EEEEEEEEEECEECCSC----CCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -----C--------CCceEEEEEEEeCCCCC----ccHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 0 13688886666554432 22122222 12223347777776653
No 93
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=96.46 E-value=0.056 Score=55.21 Aligned_cols=172 Identities=20% Similarity=0.264 Sum_probs=100.5
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecccChhHH-HHhhhcccccchhhhhcCCCccceeeecc
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLPVSPNVL-FDFLRDEAHRNEWDIMSNGGPVQTIANLA 626 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~v-f~fLrd~~~R~eWd~l~~g~~vqe~~~ia 626 (764)
...+|.... ..++|+|.+++.. +|.+ +..-++..-++.+|..+ +++|.| |.+||-..- .++.+-.|.
T Consensus 48 ~~~gW~~~~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~id 115 (237)
T 2pso_A 48 KFKGWVTCS--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETLD 115 (237)
T ss_dssp HCCSCEEEC--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEEE
T ss_pred CCCCCEEEe--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEcC
Confidence 355798662 3478999999852 2332 22346677778777665 567777 999996332 234444442
Q ss_pred cCCCCCCeEEEEeeec----cCCCeEEEEeeecC-CcceEEE-EcccccccccccccCCCCCCccccCCccEEccCCCCC
Q 004271 627 KGQDRGNAVNIQTMKS----KENSMWLLQDSYTN-AYESMVV-YAPVDITGMQSVITGCDSSNIAILPSGFSILPDGLES 700 (764)
Q Consensus 627 ~g~~~gn~vsllr~~~----~~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~Ds~~v~lLPSGF~I~Pdg~~~ 700 (764)
..+.|.-...+. .+++.++|.-...| ..|++|| ...|+-+.+-. . | -=-+..+|+||.|-|.+.
T Consensus 116 ----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~-~-g--~VR~~~~~~g~~i~P~~~-- 185 (237)
T 2pso_A 116 ----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL-L-G--GVRAVVMDSQYLIEPCGS-- 185 (237)
T ss_dssp ----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC-C-S--SEECCEEEEEEEEEECST--
T ss_pred ----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC-C-C--cEEEEEeccEEEEEECCC--
Confidence 233343333332 23677776664455 3566665 33565544311 1 1 123568899999999751
Q ss_pred CCCccCCcccccccCCCceEEEeeeeeccCCcccccccchH-HhHhhhhHHHHHHHHHhhcc
Q 004271 701 RPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESV-DSVNTLISCTLRNIKTSLQC 761 (764)
Q Consensus 701 ~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv-~tv~~li~~tv~~Ik~Al~~ 761 (764)
++|.||.-+|+=.... .+..+ ..+...+..++.++|.++..
T Consensus 186 ---------------~~t~vt~~~~~Dp~G~-----iP~~ln~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 186 ---------------GKSRLTHICRIDLKGH-----SPEWYSKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ---------------TCEEEEEEEEECCSSS-----CTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred ---------------CCEEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888777765543 22333 11334444688999988764
No 94
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=96.26 E-value=0.059 Score=53.15 Aligned_cols=169 Identities=14% Similarity=0.140 Sum_probs=97.3
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhcccccchhhhhcCCCccceeeecc
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVILCAVSSVWLP-VSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLA 626 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 626 (764)
...+|..... .++|+|..+... +. .+..-++..-++ +||+.||++|.|.+.|.+||-..- +.--|-
T Consensus 26 ~~~~W~~~~~--~~~v~v~~~~~~---~~---~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~-----~~~vle 92 (214)
T 1ln1_A 26 AGADWQLLVE--TSGISIYRLLDK---KT---GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVK-----ELYEQE 92 (214)
T ss_dssp TTTTCEEEEE--ETTEEEEEEEET---TT---TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEE-----EEEEEE
T ss_pred CCCCcEEEEE--CCCeEEEEeccC---CC---CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHh-----hEEEec
Confidence 4568987742 367999888652 22 244567778898 999999999999999999995322 111121
Q ss_pred cCCCCCCeEEEEeeec---c-CCCeEEEEeeec--CCcc--eE-EEEcccccccccccccCCCCCC--ccccCCccEEcc
Q 004271 627 KGQDRGNAVNIQTMKS---K-ENSMWLLQDSYT--NAYE--SM-VVYAPVDITGMQSVITGCDSSN--IAILPSGFSILP 695 (764)
Q Consensus 627 ~g~~~gn~vsllr~~~---~-~~~~liLQes~t--d~sg--s~-vVyAPvD~~~m~~vm~G~Ds~~--v~lLPSGF~I~P 695 (764)
. .|+.|.-..+.. . +++..++.. +. +..| .+ ++.-.|+.+.+ ...+.+ +..+++||.|-|
T Consensus 93 ~---~~~~i~~~~~~~p~p~~~RD~v~~~~-~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~p 163 (214)
T 1ln1_A 93 C---NGETVVYWEVKYPFPMSNRDYVYLRQ-RRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIES 163 (214)
T ss_dssp E---TTEEEEEEEECCCTTSCCEEEEEEEE-EEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEEE
T ss_pred c---CCCEEEEEEEEcCCCCCCceEEEEEE-EEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEec
Confidence 1 123333333332 1 245555553 33 2233 23 44555665442 112344 557899999988
Q ss_pred CCCCCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh--HhhhhHHHHHHHHHhhc
Q 004271 696 DGLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS--VNTLISCTLRNIKTSLQ 760 (764)
Q Consensus 696 dg~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al~ 760 (764)
.+. ++|.+|.-.|+=.... .+..+.. +...+-.++++++.++.
T Consensus 164 ~~~-----------------~~t~v~~~~~~Dp~G~-----iP~~l~n~~~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 164 DGK-----------------KGSKVFMYYFDNPGGQ-----IPSWLINWAAKNGVPNFLKDMARACQ 208 (214)
T ss_dssp CSS-----------------SSEEEEEEEEECCSSC-----CCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCC-----------------CceEEEEEEEECCCCc-----ccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 651 4688887777655532 2223322 23334456777776653
No 95
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.55 E-value=0.15 Score=45.51 Aligned_cols=140 Identities=7% Similarity=-0.011 Sum_probs=82.8
Q ss_pred ceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecC
Q 004271 338 DAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLS 417 (764)
Q Consensus 338 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~ 417 (764)
.+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. +|.. ..+.+--+ +.+.-+..++....+
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~----~~~~~~~~--g~~~~~~~~~~~~~~ 71 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTR----SRWVAVAM--GKKVRWLEEEEWDDE 71 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEE----EEEEEEET--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccE----EEEEEEeC--CceEEEEEEEEEcCC
Confidence 34566778899999999999999999986 3445555432 2321 11111112 223334555544333
Q ss_pred CCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHHH
Q 004271 418 AEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTTL 497 (764)
Q Consensus 418 ~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlatL 497 (764)
+...+ .. .+++ +...+.. -.-+++.++| |+|+|..+.+........++.+++..-+.=+.++.++.|
T Consensus 72 ~~~i~-~~-~~~g----~~~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 138 (147)
T 2d4r_A 72 NLRNR-FF-SPEG----DFDRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGL 138 (147)
T ss_dssp TTEEE-EE-EEEE----SCSEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEE-EE-eccC----ChhheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 11 1221 1101011 1345677888 999999888876444556666666666667889999999
Q ss_pred HHHHHHH
Q 004271 498 QLQCERL 504 (764)
Q Consensus 498 qR~cerl 504 (764)
.+.+|..
T Consensus 139 k~~~e~~ 145 (147)
T 2d4r_A 139 EERVLAA 145 (147)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9999974
No 96
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=95.24 E-value=0.43 Score=49.58 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCC--ccChhhhHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCcEEEEE
Q 004271 490 ARHWMTTLQLQCERLVFFMATNVPTKDSSG--VATLAGRKSILKLAQRMTWSFCRAIGASSYHVWNKVTSKTGEDIRVSS 567 (764)
Q Consensus 490 A~rwlatLqR~cerla~~~~~~i~~~d~~~--i~~~~Gr~s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~ 567 (764)
-||.-.++-|-=-||.-- .|-+....+ ...++-+.+=+.|+.-.+.+...-. ...+|.... ..++|+|.+
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l~---~~~gW~~~~--~~~gv~Vy~ 81 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLV---AKDNWVLSS--EISQVRLYT 81 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHHH---TCSCCEEEE--EETTEEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhhh---ccCCCEEEe--cCCCeEEEE
Confidence 356666665554444321 222222212 2234667777777776666555332 457898763 237899998
Q ss_pred ccCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcccccchhhhhcCCCccceeeecccCCCCCCeEEEEeee--c---
Q 004271 568 RKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANLAKGQDRGNAVNIQTMK--S--- 642 (764)
Q Consensus 568 r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsllr~~--~--- 642 (764)
+.. +| .++-+...-+++||+.||++|.|.+.|.+||-.. ...+.+.+|.. .+.| .+.. .
T Consensus 82 ~~~---~~-----~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~--~~~~vle~id~----~~iv--Y~~~~p~~~~ 145 (258)
T 3fo5_A 82 LED---DK-----FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHY--RSVELVQQVDE----DDAI--YHVTSPALGG 145 (258)
T ss_dssp EEC---SS-----CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTC--CEEEEEEEEET----TEEE--EEEEECCCTT
T ss_pred EEC---CC-----ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhc--cEEEEEEEcCC----CeEE--EEEecCCccC
Confidence 642 22 3455777778999999999999999999999532 12344444421 1232 2332 1
Q ss_pred --cCCCeEEEEeeecC-Ccce-EEE-EcccccccccccccCCCCCCc--cccCCccEEccCC
Q 004271 643 --KENSMWLLQDSYTN-AYES-MVV-YAPVDITGMQSVITGCDSSNI--AILPSGFSILPDG 697 (764)
Q Consensus 643 --~~~~~liLQes~td-~sgs-~vV-yAPvD~~~m~~vm~G~Ds~~v--~lLPSGF~I~Pdg 697 (764)
.+++..+|.-.-++ ..|. +|| +-.|+-+.+- .-+.+| ..+|+||.|-|.+
T Consensus 146 ~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~~ 202 (258)
T 3fo5_A 146 HTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWREG 202 (258)
T ss_dssp CSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEECC
Confidence 12566666553232 2443 444 3344443321 113344 6899999999976
No 97
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=88.95 E-value=5.2 Score=37.97 Aligned_cols=146 Identities=9% Similarity=0.044 Sum_probs=83.4
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeec
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQL 416 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~ 416 (764)
..+.+|...+..+-+.+-|.+.|-+.+|.+ .-++++..+. ++ +.+++.+.-. ..++-|.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~~~~~----~~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEILEEGQ----GY----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEEEEET----TE----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEEecCC----CE----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 456677888999999999999999999998 5566665432 11 2233333212 22344444444333
Q ss_pred CCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhc---------chhh
Q 004271 417 SAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVS---------SGLA 487 (764)
Q Consensus 417 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~---------sg~a 487 (764)
++.. +.. ..++. +++...+...+ -+++.++|.|+|+|.-++++....+..++.++.. .-+.
T Consensus 74 ~~~~-i~~-~~~~~--~gpf~~~~g~w------~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~ 143 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--APIVGHMSGEW------RAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVE 143 (172)
T ss_dssp TTTE-EEE-EEEEC--CTTEEEEEEEE------EEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCChhhcEEEE------EEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHh
Confidence 3322 111 11110 11111111111 2556667899999999999988777777765532 1222
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004271 488 FGARHWMTTLQLQCERLVF 506 (764)
Q Consensus 488 fgA~rwlatLqR~cerla~ 506 (764)
=+.+.-|+.|++.+|+.+.
T Consensus 144 ~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 144 RNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHh
Confidence 2334577777777777543
No 98
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=88.21 E-value=7.6 Score=37.37 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=77.2
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeec
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQL 416 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~ 416 (764)
..+.+|.-.+.++-+.+.|.++|-+.+|.+ ...+++..+. +.+ .+...|++..--. .++|..-|.+ -
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~----~~~~~~~~~~-----~~~-~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEY----AEAEILRQDG-----DGF-DFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTE----EEEEEEEEET-----TEE-EEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhhe----eEEEEEecCC-----CEE-EEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 346677778889999999999999999998 5556666542 111 1111122222111 2223222221 1
Q ss_pred CCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHH
Q 004271 417 SAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTT 496 (764)
Q Consensus 417 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlat 496 (764)
.++..+.... +.++| | +.+=.-.-+.+.++| |+|+|.-+.++++.. + +-.+.+...+.=..+..|+.
T Consensus 73 ~~~~~I~~~~----l~~gP---f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~-p-~~~~~~~~av~~~~~~~L~~ 139 (169)
T 3tvq_A 73 KGSRTVRAHR----VETGP---F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGA-P-FDNAHMTAHLNTTTRANMER 139 (169)
T ss_dssp GGGTEEEEEE----SSCTT---E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTC-S-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEE----cCCCC---h---hheeeEEEEEECCCC-EEEEEEEEEEecCCC-c-ccHHHHHHHHHhhHHHHHHH
Confidence 2222221111 11111 1 122234456788888 999999999987552 1 11112222222223557899
Q ss_pred HHHHHHHHHh
Q 004271 497 LQLQCERLVF 506 (764)
Q Consensus 497 LqR~cerla~ 506 (764)
|++.+|+.+.
T Consensus 140 LK~~aE~~~~ 149 (169)
T 3tvq_A 140 IKKIIEDRHR 149 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhh
Confidence 9999998654
No 99
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=87.36 E-value=7.8 Score=36.84 Aligned_cols=141 Identities=9% Similarity=0.121 Sum_probs=78.1
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhh--cccCcccCceeEEEEeee
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQ--MLTPMVPTREVYFVRYCK 414 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~--v~SPLvp~Re~~flRyck 414 (764)
..+.+|.-.+.++-+++-|.++|-+.||.. ...+|++.+. ++ +.+.|. +--- -.++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~----~~~~vl~~~~----~~----~~~rl~~~~~~~--G~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEY----ASVEVLGRDD----DK----VTFRLTMHPDAD--GKVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSE----EEEEEEEECS----SE----EEEEEEECCCTT--SCCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCc----eEEEEEecCC----CE----EEEEEEEEeccC--ceEEEEEEEEEE
Confidence 456778888999999999999999999998 5566776642 11 223322 2111 134445566644
Q ss_pred ecCCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHH
Q 004271 415 QLSAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWM 494 (764)
Q Consensus 415 q~~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwl 494 (764)
. .++..+ +..+ +.++| | +.+=.-.-+.+.++ .|+|+|.-+.++.+..-..+ +.+..-+-=..+.-|
T Consensus 72 d-~~~~~I--~~~~--~~~gP---f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~L 137 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP---F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQM 137 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT---E---EEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC---h---hhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHHH
Confidence 3 333222 2221 11222 1 22223344567777 59999999999976521111 001111111223357
Q ss_pred HHHHHHHHHHH
Q 004271 495 TTLQLQCERLV 505 (764)
Q Consensus 495 atLqR~cerla 505 (764)
+.|++.+|+.+
T Consensus 138 ~~lK~~~E~~~ 148 (159)
T 3tl1_A 138 ALIRDRIEQAA 148 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 77777777754
No 100
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=85.10 E-value=2.5 Score=38.81 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=82.9
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeec
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQL 416 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~ 416 (764)
+.+..|...+..+-+.+.|.+.|-+.+|.+ .-++++..+..|. |. -+.+++.+- .-+.++-|..|+..+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcC
Confidence 345677788999999999999999999998 3334454322111 11 133444442 2355666777887643
Q ss_pred CCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHH
Q 004271 417 SAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTT 496 (764)
Q Consensus 417 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlat 496 (764)
.+ ..|.-..+++ +...+...+ -+++.++| |+|++.-++|... .++..+...-+.-.+++-+.+
T Consensus 75 ~~--~~i~~~~~~G----~f~~~~g~w------~f~~~~~g-t~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~ 137 (148)
T 1t17_A 75 DA--RSIDVSLLYG----PFKRLNNGW------RFMPEGDA-TRVEFVIEFAFKS----ALLDAMLAANVDRAAGKLIAC 137 (148)
T ss_dssp TT--CEEEEEESST----TSSCEEEEE------EEEEETTE-EEEEEEEEECCSC----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEECCC----ChhccEEEE------EEEECCCC-eEEEEEEEEEECc----HHHHHHHHHHHHHHHHHHHHH
Confidence 33 2233333442 111111222 24567778 9999998888752 234445543344466777777
Q ss_pred HHHHHHHH
Q 004271 497 LQLQCERL 504 (764)
Q Consensus 497 LqR~cerl 504 (764)
+.+.|+.+
T Consensus 138 f~~r~~~~ 145 (148)
T 1t17_A 138 FEARAQQL 145 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 101
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.20 E-value=3.6 Score=35.64 Aligned_cols=52 Identities=31% Similarity=0.567 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH----HHHhhhcC
Q 004271 173 NSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE----KLRAAVGK 240 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~----r~~~~~~~ 240 (764)
-..++-+++.|+.+|..+.++... +......|..||++|++|+. |+.++++|
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e----------------~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQN----------------AQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666665554432 22255669999999999986 56666554
No 102
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=79.91 E-value=23 Score=33.15 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=81.0
Q ss_pred eceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeec
Q 004271 337 RDAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQL 416 (764)
Q Consensus 337 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~ 416 (764)
..+.+|.-.+..+-+.+.|.++|...||..+.- ...+ +|....+.+++.+-. ...|+-|..||...-
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~ 76 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLG-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADK 76 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEE-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEET
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcC-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcC
Confidence 345678889999999999999999999987432 1222 233344445555433 234888999998664
Q ss_pred CCCcEEEEEEeccCcccccc-CccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHH
Q 004271 417 SAEQWAIVDVSIDKVEENID-ASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMT 495 (764)
Q Consensus 417 ~~g~w~VvDvS~d~~~~~~~-~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwla 495 (764)
++. .+... .+++ +. ..... -.-+++.++|.|+|+|.-+.|.. ..+..++..+...-+-=.+++-+.
T Consensus 77 ~~~-~I~~~-~~~g----~~~~~l~g------~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~ 143 (161)
T 3p9v_A 77 EAG-KITWS-PIKG----EGNGVVSG------SWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVD 143 (161)
T ss_dssp TTT-EEEEE-ECTT----STTEEEEE------EEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEE-EecC----ccceeEEE------EEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 333 22221 1221 11 11111 23356788889999999888876 123444444443333334555555
Q ss_pred HHHHHHH
Q 004271 496 TLQLQCE 502 (764)
Q Consensus 496 tLqR~ce 502 (764)
+..+-++
T Consensus 144 af~~ra~ 150 (161)
T 3p9v_A 144 TYMANLK 150 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
No 103
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.21 E-value=0.5 Score=39.85 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=36.3
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccc
Q 004271 121 IREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQN 159 (764)
Q Consensus 121 l~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQN 159 (764)
.+.|+..|+..+.+.+.....|+.+.+|+-.|||-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 467999999999999999999999999999999999943
No 104
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.85 E-value=5.5 Score=35.14 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHH
Q 004271 147 GLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENAR 226 (764)
Q Consensus 147 gLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~ 226 (764)
||+..+|..|=|-||+-.-|.........-..+...|..++..+.. +.++|+.||++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~-----------------------e~~~L~~e~~~ 73 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ-----------------------QVEQLKQEVSR 73 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 7888888777777776555544444445555666677777766653 77889999999
Q ss_pred HHHHHHHHHhhh
Q 004271 227 LKAEVEKLRAAV 238 (764)
Q Consensus 227 Lk~E~~r~~~~~ 238 (764)
++.|++.+....
T Consensus 74 ~~~e~d~~k~k~ 85 (90)
T 2wt7_B 74 LARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888766543
No 105
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=73.28 E-value=2.9 Score=42.38 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=91.5
Q ss_pred CCCCceeeecCCCCcEEEEEccCCCCCCCCCceEE-EEEEeeecc-cChhHHHHhhhcccccchhhhhcCCCccceeeec
Q 004271 548 SYHVWNKVTSKTGEDIRVSSRKNLNDPGEPLGVIL-CAVSSVWLP-VSPNVLFDFLRDEAHRNEWDIMSNGGPVQTIANL 625 (764)
Q Consensus 548 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl-~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~i 625 (764)
...+|.... ..++|+|..++..+ . |.++ --++..-++ ++|+.||++|.|.+.|.+||-..- .++.+-.|
T Consensus 45 ~~~~W~~~~--~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~~--~~~vle~i 115 (255)
T 2e3n_A 45 GDANWQLVV--EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIE--NFHVVETL 115 (255)
T ss_dssp TCTTEEEEE--EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCSEE--EEEEEEEE
T ss_pred CCCCcEEEE--eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhhcc--eeEEEEEc
Confidence 346898763 23789999988532 2 3221 123344456 999999999999999999995321 12233333
Q ss_pred ccCCCCCCeEEEEeeec----cCCCeEEEEeeecC----C---cceEEEEcccccccccccccCCCCCCcc-----ccCC
Q 004271 626 AKGQDRGNAVNIQTMKS----KENSMWLLQDSYTN----A---YESMVVYAPVDITGMQSVITGCDSSNIA-----ILPS 689 (764)
Q Consensus 626 a~g~~~gn~vsllr~~~----~~~~~liLQes~td----~---sgs~vVyAPvD~~~m~~vm~G~Ds~~v~-----lLPS 689 (764)
. .++.|--...+. .+++..++.....+ . ..-+++.-.++-+.+- ..+.+|- .|.+
T Consensus 116 ~----~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P-----~~~g~VR~~~~~~~~~ 186 (255)
T 2e3n_A 116 A----DNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP-----LNNRCVRAKINVAMIC 186 (255)
T ss_dssp E----TTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC-----CCSSSEECEEEEEEEE
T ss_pred C----CCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC-----CCCCCEEEEEEeeeee
Confidence 1 122232222222 23666666644332 1 2334444455544321 1122222 3678
Q ss_pred ccEEccC-CCCCCCCccCCcccccccCCCceEEEeeeeeccCCcccccccchHHh--HhhhhHHHHHHHHHhh
Q 004271 690 GFSILPD-GLESRPLVITSRQEEKITEGGSLLSIAFQILTNNSPAAKLTMESVDS--VNTLISCTLRNIKTSL 759 (764)
Q Consensus 690 GF~I~Pd-g~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al 759 (764)
||.|.|. |.- .+.. ..++|.+|.-.|+=.... .+..+.. +...+-.++++++..+
T Consensus 187 ~~~i~~~~g~~--~l~~--------~~~~t~vt~~~~~Dp~G~-----iP~~lvn~~~~~~~~~~l~~L~k~v 244 (255)
T 2e3n_A 187 QTLVSPPEGNQ--EISR--------DNILCKITYVANVNPGGW-----APASVLRAVAKREYPKFLKRFTSYV 244 (255)
T ss_dssp EEEEC---CCC--CCCG--------GGEEEEEEEEEEEECSSC-----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEeccCCCCc--cccc--------CCCcEEEEEEEEeCCCCc-----cCHHHHHHHHhccccHHHHHHHHHH
Confidence 9999985 310 1000 124788888877765543 2222221 2233334566666544
No 106
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=72.81 E-value=0.21 Score=43.34 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=29.6
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccc
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQN 159 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQN 159 (764)
.+||+++....-..+.... .....++|+.+|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4678887765555553220 123668999999999999999743
No 107
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.99 E-value=16 Score=29.47 Aligned_cols=40 Identities=28% Similarity=0.235 Sum_probs=28.7
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHH
Q 004271 169 ERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEV 231 (764)
Q Consensus 169 ~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~ 231 (764)
++.....+..+.+.|..+|..|.. +...|+.|+..|+..+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~-----------------------~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQS-----------------------EVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHh
Confidence 344566778888888888887776 5566778888877654
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.78 E-value=19 Score=29.48 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=30.9
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH
Q 004271 169 ERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVE 232 (764)
Q Consensus 169 ~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~ 232 (764)
.+.....+..+.+.|..+|..|.. +..+|..|+..||+-+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~-----------------------~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKE-----------------------RADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHh
Confidence 445567788888889998888886 55668888888886553
No 109
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=65.94 E-value=79 Score=28.75 Aligned_cols=138 Identities=7% Similarity=0.057 Sum_probs=71.1
Q ss_pred eeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEE--EEeeeec
Q 004271 339 AGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYF--VRYCKQL 416 (764)
Q Consensus 339 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~f--lRyckq~ 416 (764)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| ... ..+.+ ++-|.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~~~---~~~~~--~~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------KYK---ADLQI--GIAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------EEE---EEEEE--CCGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------eEE---EEEEE--EeeeEEEEEEEEEEEEecC
Confidence 4467778899999999999999999986 445555422 111 11111 1112222222 2444444
Q ss_pred CCCcEEEEEEeccCccccccCccccccccCCceeeeeCCCCeeEEEEEEeeeeccccccccchhhhcchhhHHHHHHHHH
Q 004271 417 SAEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKSNGHCKVTWVEHLECQKGTVHTMYRSIVSSGLAFGARHWMTT 496 (764)
Q Consensus 417 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afgA~rwlat 496 (764)
+...|++.-..-+. + ++.. .---+-+.+..+|.|+|+|.-.+++... +..+..+++..-.-=.....+..
T Consensus 72 ~~~~~~~~~~~~~~--~----~~~~---~~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~~~~~~~~~~~~~~~ 141 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG--P----GFVN---AEGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRMLGGVAKLLISDFFKK 141 (162)
T ss_dssp TTTEEEEEEEEEET--T----EEEE---EEEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEecCC--C----ccEE---EEEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 44555444332221 1 1110 0011335666778899999887776433 34555555533222223444445
Q ss_pred HHHHHH
Q 004271 497 LQLQCE 502 (764)
Q Consensus 497 LqR~ce 502 (764)
|++.+|
T Consensus 142 lk~~~e 147 (162)
T 2pcs_A 142 IQKEIA 147 (162)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 554444
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=62.90 E-value=16 Score=32.04 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 004271 220 LRIENARLKAEVEKLRAAVG 239 (764)
Q Consensus 220 L~~EN~~Lk~E~~r~~~~~~ 239 (764)
|+.+...|+.|+..+..++.
T Consensus 55 Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 55 LQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555554444
No 111
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=57.04 E-value=21 Score=28.17 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004271 215 TEEQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 215 ~e~~~L~~EN~~Lk~E~~r~~ 235 (764)
+|..-|+.||.-||.|++.-+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhH
Confidence 356667777777777776444
No 112
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=55.41 E-value=8.6 Score=39.70 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004271 216 EEQQLRIENARLKAEVE 232 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~ 232 (764)
+.++|+.||++||+.|.
T Consensus 44 ~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 44 EVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45567788888887655
No 113
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.87 E-value=48 Score=25.30 Aligned_cols=43 Identities=30% Similarity=0.526 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Q 004271 173 NSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAV 238 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~~~ 238 (764)
+..+++....|+.+|..+.. ++|.|..--+.|++|+.|+..-.
T Consensus 5 naylrkkiarlkkdnlqler-----------------------deqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLER-----------------------DEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhh-----------------------hHhhHHHHHHHHHHHHHHHHHHH
Confidence 44566667777776665543 67777777788999999887643
No 114
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=51.65 E-value=9.3 Score=36.42 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=27.6
Q ss_pred EEEEeeecccChhHHHHhhhcccccchhhh
Q 004271 583 CAVSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 583 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
+...|+-+..||+.||+|++|.+.-.+|..
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 468899999999999999999999999984
No 115
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=50.53 E-value=30 Score=29.65 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 004271 219 QLRIENARLKAEVEKLRAAV 238 (764)
Q Consensus 219 ~L~~EN~~Lk~E~~r~~~~~ 238 (764)
+|+.+...|+.|+..+..++
T Consensus 54 ~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 54 RLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555443
No 116
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.55 E-value=23 Score=28.67 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 004271 172 ENSLLKSEIEKLREENKAMRE 192 (764)
Q Consensus 172 e~~~l~~e~~~l~~en~~l~e 192 (764)
....|..+.+.|..+|..+..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665554
No 117
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.95 E-value=36 Score=28.55 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 004271 218 QQLRIENARLKAEV 231 (764)
Q Consensus 218 ~~L~~EN~~Lk~E~ 231 (764)
+.|+.++..|..|+
T Consensus 53 ~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 53 DQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 118
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.62 E-value=74 Score=25.76 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=15.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 004271 170 RHENSLLKSEIEKLREENKAMRE 192 (764)
Q Consensus 170 r~e~~~l~~e~~~l~~en~~l~e 192 (764)
......|..+.+.|..+|..|++
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777665
No 119
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.26 E-value=34 Score=30.29 Aligned_cols=11 Identities=45% Similarity=0.975 Sum_probs=8.8
Q ss_pred cCCCCCCCCCc
Q 004271 197 ACCPNCGMATT 207 (764)
Q Consensus 197 ~~C~~Cg~p~~ 207 (764)
..||.||.+..
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 45999998765
No 120
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=42.84 E-value=54 Score=29.32 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=31.9
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHH
Q 004271 169 ERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEK 233 (764)
Q Consensus 169 ~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r 233 (764)
.-++.-.|...++.+..||..++..-... |. --..+..+..+|+.||.+|+.|-+.
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~----~~-----~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRL----DA-----RVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----hh-----hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666766766666543221 10 0001223778888888888877654
No 121
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=42.75 E-value=11 Score=33.05 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=25.5
Q ss_pred EEEeeecccChhHHHHhhhcccccchhhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
...++.++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 35678899999999999999999999963
No 122
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.13 E-value=83 Score=27.43 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 004271 173 NSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 173 ~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~ 235 (764)
...+..+.+.|..||..|+. +..+|..|...|+.-+..+-
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~-----------------------~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQK-----------------------KVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHCc
Confidence 34455666667777776665 55567777777776665544
No 123
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=40.58 E-value=13 Score=31.64 Aligned_cols=43 Identities=7% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecc
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWF 157 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWF 157 (764)
|+.+.+|+.++....-..+... . ...++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 4455678888865555555432 2 35689999999999998885
No 124
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.09 E-value=1e+02 Score=27.62 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=37.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccC---CCCCCC-CCccCCCCCc-hHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004271 171 HENSLLKSEIEKLREENKAMREAINKAC---CPNCGM-ATTSRDTSMT-TEEQQLRIENARLKAEVEKLRAAVGK 240 (764)
Q Consensus 171 ~e~~~l~~e~~~l~~en~~l~e~~~~~~---C~~Cg~-p~~~~~~s~~-~e~~~L~~EN~~Lk~E~~r~~~~~~~ 240 (764)
.+-..|+.++++|+.++..+.-.+.+.. ..+|.. ...+-....+ --.++...+-.+|+.|++++.....+
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666655555555432 222211 1122222222 23455667778999999988876654
No 125
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=38.47 E-value=11 Score=34.78 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=25.4
Q ss_pred EEEeeecccChhHHHHhhhcccccchhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
...++.+|.||++||++|.|.++..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3468889999999999999999999996
No 126
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=38.00 E-value=13 Score=33.75 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=26.4
Q ss_pred EEEEeeecccChhHHHHhhhcccccchhh
Q 004271 583 CAVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 583 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
....++.++.||++||++|.|.++..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 46678899999999999999999999996
No 127
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.89 E-value=75 Score=25.11 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 004271 175 LLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 175 ~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~ 235 (764)
.++.++..|.+.|..|.+.++. -+.|-.+|++|++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~-----------------------AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKE-----------------------ARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhh
Confidence 4667777777777777776543 5667788899988864
No 128
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=37.82 E-value=1.5 Score=42.15 Aligned_cols=29 Identities=7% Similarity=-0.049 Sum_probs=21.8
Q ss_pred CCCCCcccCCHHHHHHHHHhhhcCCCCCH
Q 004271 108 KKRKKYHRHTAEQIREMEALFKESPHPDE 136 (764)
Q Consensus 108 kkrr~RtrfT~~Ql~~LE~~F~~~~yP~~ 136 (764)
+.||.|+.|+.+|++.|+..|+.++||+.
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 44677899999999999999999999974
No 129
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=36.66 E-value=18 Score=32.97 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=25.9
Q ss_pred EEEeeecccChhHHHHhhhcccccchhhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
...|..+|.||+.||+++.|-++..+|--
T Consensus 4 ~~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 4 HVVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 34688999999999999999999999974
No 130
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=36.35 E-value=1.1e+02 Score=26.04 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004271 217 EQQLRIENARLKAEVEKLR 235 (764)
Q Consensus 217 ~~~L~~EN~~Lk~E~~r~~ 235 (764)
...|..||..|+.+++.|.
T Consensus 45 ~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555443
No 131
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.92 E-value=62 Score=25.63 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004271 216 EEQQLRIENARLKAEVE 232 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~ 232 (764)
+...|+.||+.||.+++
T Consensus 20 d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 132
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=35.46 E-value=20 Score=32.03 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=36.0
Q ss_pred CcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhh
Q 004271 112 KYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRT 162 (764)
Q Consensus 112 ~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRa 162 (764)
.|.+||.++..++-..+..+..+. ..++|+++|+++..|..|.++++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 356899999888777775555443 347899999999999998766554
No 133
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=35.05 E-value=19 Score=33.40 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=25.9
Q ss_pred EEEeeecccChhHHHHhhhcccccchhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
...|+.++.||+.||+|+.|.++-.+|-
T Consensus 6 v~~s~~I~ap~e~V~~~~~D~e~~p~w~ 33 (155)
T 3ggn_A 6 VRDAVTIGKPAEQLYAVWRDLPGLPLLM 33 (155)
T ss_dssp EEEEEEESSCHHHHHHHHHCGGGHHHHS
T ss_pred EEEEEEEcCCHHHHHHHHhCHHHhHHHh
Confidence 4678899999999999999999999996
No 134
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=34.75 E-value=77 Score=25.44 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 004271 216 EEQQLRIENARLKAEVEKLRAAVGK 240 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~~~~~~ 240 (764)
..+||...+....+|+.|+.+++..
T Consensus 26 kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999988764
No 135
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.03 E-value=32 Score=23.27 Aligned_cols=17 Identities=47% Similarity=0.729 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004271 218 QQLRIENARLKAEVEKL 234 (764)
Q Consensus 218 ~~L~~EN~~Lk~E~~r~ 234 (764)
++|+..|++||+|+.-+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 36788999999998754
No 136
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.97 E-value=45 Score=24.08 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 004271 216 EEQQLRIENARLKAEVEKLRAAVG 239 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~~~~~ 239 (764)
....|..+|..|++|+.|+..++.
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 456789999999999999988764
No 137
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=33.04 E-value=2.2e+02 Score=25.52 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=28.1
Q ss_pred eeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCC
Q 004271 339 AGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGG 379 (764)
Q Consensus 339 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g 379 (764)
+..|...+.++-+.|.|...|-+-+|.+ ..++++..+
T Consensus 7 si~I~ap~e~Vw~~l~d~~~~~~w~p~v----~~~~~~~g~ 43 (151)
T 2le1_A 7 SVEVAAPAADVWTLVGDFSAIHRWHPQV----SAPTLRGAS 43 (151)
T ss_dssp EEEESSCHHHHHHHHTTSGGGGGTCTTC----CCEEEESSC
T ss_pred EEEecCCHHHHHHHHhCcCcHHHhcCCc----eEEEEECCC
Confidence 4456778889999999999999989986 344555433
No 138
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=32.65 E-value=24 Score=31.18 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=24.9
Q ss_pred EEEeeecccChhHHHHhhhcccccchh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEW 610 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eW 610 (764)
...+..++.||++||++|-|..+..+|
T Consensus 7 i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 7 AQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 457888999999999999999999999
No 139
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=32.08 E-value=26 Score=31.30 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=24.5
Q ss_pred EEeeecccChhHHHHhhhcccccchhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
..+..++.||++||+.|-|.++..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467888999999999999999999994
No 140
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=32.05 E-value=14 Score=28.87 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=30.0
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeeccc
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQ 158 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQ 158 (764)
.+||++........+... .+......++|+++|+++..|..|.+
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 467888776665445432 22111256899999999999999964
No 141
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=30.64 E-value=1.7e+02 Score=27.40 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=34.5
Q ss_pred ceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeee
Q 004271 338 DAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLM 391 (764)
Q Consensus 338 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm 391 (764)
.+..|...+.++-++|.|-..| +-+|.++...+ ++ .|.+++.-|++..+
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e---~~-eg~~~~~vGsvR~~ 54 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCK---KV-GGGGGYSVGARRLL 54 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEE---EE-SSCCTTCTTCEEEE
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEE---EE-ecCCCCCCCCEEEE
Confidence 3456677889999999999999 99998854323 33 45544456777665
No 142
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=29.94 E-value=2 Score=39.12 Aligned_cols=66 Identities=26% Similarity=0.286 Sum_probs=38.2
Q ss_pred CCCcceEeecccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHH
Q 004271 147 GLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENAR 226 (764)
Q Consensus 147 gLserQVkvWFQNRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~ 226 (764)
||++.||.-.=|-||.-.-|.........-..+.+.|..++.. +..+..+|..||..
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~-----------------------L~~e~e~L~~En~~ 83 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAE-----------------------LQQEVEKLASENAS 83 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------------------TSSTTTTTTSTTSH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHH
Confidence 6777776655455554444433333333444455555555432 22367778888888
Q ss_pred HHHHHHHHH
Q 004271 227 LKAEVEKLR 235 (764)
Q Consensus 227 Lk~E~~r~~ 235 (764)
|+.|++++.
T Consensus 84 l~~E~~~lk 92 (107)
T 3a5t_A 84 MKLELDALR 92 (107)
T ss_dssp HHHTTTSSS
T ss_pred HHHHHHHHH
Confidence 888877554
No 143
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=29.51 E-value=25 Score=31.88 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=24.7
Q ss_pred EEEeeecccChhHHHHhhhcccccchhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
-..+.-++.||++||+.|-|+++..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456788999999999999999999994
No 144
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=28.21 E-value=30 Score=32.57 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=26.5
Q ss_pred EEEEeeecccChhHHHHhhhcccccchhh
Q 004271 583 CAVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 583 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
....|+.++.||+.||+++.|-...++|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 45688999999999999999999999996
No 145
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.87 E-value=54 Score=33.93 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 004271 176 LKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRA 236 (764)
Q Consensus 176 l~~e~~~l~~en~~l~e~~~~~~C~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~ 236 (764)
++.+++.|.+.|..++++ .++++.|..+||+|++++..
T Consensus 59 L~~ql~~L~arNe~L~~~-----------------------Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMET-----------------------LKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHhcC
Confidence 455556666666666653 44588888999999998874
No 146
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=26.29 E-value=14 Score=26.91 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhh
Q 004271 115 RHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRT 162 (764)
Q Consensus 115 rfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRa 162 (764)
.+++++...+...+... ....++|+.+|++..-|..|++....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35666666655555432 23568999999999999999865544
No 147
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.17 E-value=22 Score=30.55 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=33.1
Q ss_pred CcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHH
Q 004271 112 KYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQI 164 (764)
Q Consensus 112 ~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~ 164 (764)
.-..+|+.|.+.|.-.++... -+++|..+|+++.-|+.+.++-+.|.
T Consensus 24 ~l~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 24 PLSGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp ---CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 345689999999988754433 47899999999999887654444333
No 148
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=25.66 E-value=38 Score=28.64 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=35.3
Q ss_pred ccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHH
Q 004271 114 HRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTI 167 (764)
Q Consensus 114 trfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~ 167 (764)
..+++.|...|.-.|-.. ..-.++|+.+|+++..|+.+...-|.|.|+.
T Consensus 36 ~~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 36 AQLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp HTSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 457888888887755322 2357899999999999988776666555544
No 149
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=25.34 E-value=27 Score=31.45 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=25.1
Q ss_pred EEEeeecccChhHHHHhhhcccccchhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
...+..++.||++||+.|-|..+..+|-
T Consensus 10 i~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 10 IKQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 3467889999999999999999999996
No 150
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.61 E-value=19 Score=30.49 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=34.3
Q ss_pred CCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHH
Q 004271 111 KKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQI 164 (764)
Q Consensus 111 r~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~ 164 (764)
+.-..+|+.|.+.|.-.++... -.++|..+|+++.-|+.+..+-+.|.
T Consensus 25 ~~l~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 25 ELYEMLTEREMEILLLIAKGYS------NQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp CTGGGCCSHHHHHHHHHHTTCC------TTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3446789999999988654322 35889999999999987665444433
No 151
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=24.46 E-value=72 Score=26.90 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=22.7
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccchhhHHHHHHHh
Q 004271 121 IREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQER 170 (764)
Q Consensus 121 l~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQNRRak~Kr~q~r 170 (764)
+....-.|+.+|||+..--.+ | =.|||.+||..|..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 344555689999998541100 0 14899999876654
No 152
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=24.34 E-value=46 Score=30.18 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=24.7
Q ss_pred EEEeeecccChhHHHHhhhcccccchhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
...++-++.||.+||++|.|-.+..+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3567889999999999999998888996
No 153
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=24.26 E-value=27 Score=31.11 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=23.4
Q ss_pred EeeecccChhHHHHhhhcccccchhh
Q 004271 586 SSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 586 tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
.+..++.||++||++|-|.++..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45688999999999999999999994
No 154
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=23.99 E-value=29 Score=31.92 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=25.0
Q ss_pred EEEeeecccChhHHHHhhhcccccchhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
...+..++.||++||++|-|..+..+|-
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W~ 39 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKWF 39 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHhc
Confidence 3467889999999999999999999993
No 155
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.19 E-value=34 Score=24.31 Aligned_cols=40 Identities=3% Similarity=0.196 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecccc
Q 004271 115 RHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQN 159 (764)
Q Consensus 115 rfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWFQN 159 (764)
.+++++...+...+... + ...++|+.+|++..-|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777765555555432 2 3568999999999999888754
No 156
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=22.83 E-value=4.3e+02 Score=23.90 Aligned_cols=113 Identities=10% Similarity=0.036 Sum_probs=58.5
Q ss_pred ceeEEEeChhhHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCCceeeehhhhhcccCcccCceeEEEEeeeecC
Q 004271 338 DAGVVFVDLPKLVQSFTDVNQWKAMFPCLISKAATVDVICGGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLS 417 (764)
Q Consensus 338 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~vis~g~~g~~~G~lqlm~ael~v~SPLvp~Re~~flRyckq~~ 417 (764)
.+..|...+..+-+.+.|.+.|-+-+|.+ ..++++..+ ... +. +-.|.=+.+.-+..||+....
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~~-------~~~-~~----~~~~~G~~~~~~~~~v~e~~p 71 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDDK-------RSR-WT----VEAPAPLGTVSWEAELTADEP 71 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSSS-------EEE-EE----EECCTTTCEEEEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecCC-------eeE-EE----EEecCCcceEEEEEEEEEecC
Confidence 45567778899999999999999999987 444555321 111 11 111221244455677776555
Q ss_pred CCcEEEEEEeccCccccccCccccccccCCceeeeeCC-CCeeEEEEEEeeeeccccccccc
Q 004271 418 AEQWAIVDVSIDKVEENIDASLAKCRKRPSGCIVEDKS-NGHCKVTWVEHLECQKGTVHTMY 478 (764)
Q Consensus 418 ~g~w~VvDvS~d~~~~~~~~~~~~~~~~PSGclIq~~~-nG~skVtwVeH~e~d~~~v~~l~ 478 (764)
+... +-.++++.. .... .-+-.++.+ +|.|+|++.-+.+....-+-.++
T Consensus 72 ~~~i--~~~~~~g~~----~~~~------g~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~ 121 (155)
T 3ggn_A 72 GKRI--AWRSLPGAR----IENS------GEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVI 121 (155)
T ss_dssp TTEE--EEEECTTCS----SCEE------EEEEEEECSSSSCEEEEEEEEEC----------
T ss_pred CCEE--EEEECCCCC----cceE------EEEEEEECCCCCceEEEEEEEEECCCcHHHHHH
Confidence 4432 233344310 0011 112246774 56899999777665443333344
No 157
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}
Probab=22.79 E-value=30 Score=31.25 Aligned_cols=26 Identities=4% Similarity=0.156 Sum_probs=23.9
Q ss_pred EEeeecccChhHHHHhhhcccccchh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEW 610 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eW 610 (764)
..+.-++.||++||++|-|.++..+|
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W 29 (142)
T 2lcg_A 4 TVETTVAAPVGKVWRAYTTPEDIKQW 29 (142)
T ss_dssp EEEEEESSCHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcC
Confidence 46778899999999999999999999
No 158
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}
Probab=22.58 E-value=31 Score=31.42 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=23.8
Q ss_pred EEeeecccChhHHHHhhhcccccchh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEW 610 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eW 610 (764)
..+..++.||++||+.|-|+++..+|
T Consensus 4 ~~~~~i~Ap~e~Vw~altdp~~~~~W 29 (144)
T 2lgh_A 4 SIEAHIEQEIEAVWWAWNDPDCIARW 29 (144)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHTTS
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcc
Confidence 45678899999999999999999999
No 159
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.76 E-value=3.3e+02 Score=23.26 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=22.6
Q ss_pred chhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 004271 159 NRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINK 196 (764)
Q Consensus 159 NRRak~Kr~q~r~e~~~l~~e~~~l~~en~~l~e~~~~ 196 (764)
+||.|.+-.+...+-..++...+.|+.-...+.+.+..
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~ 50 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTR 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35566665566666666666666666655555555443
No 160
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}
Probab=21.70 E-value=32 Score=31.38 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=23.6
Q ss_pred EEeeecccChhHHHHhhhcccccchh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEW 610 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eW 610 (764)
..+.-++.||++||+.|-|+++..+|
T Consensus 5 ~~~~~i~Ap~e~Vw~altdpe~~~~W 30 (144)
T 2l8o_A 5 TVEVTVYAAIEKVWKYWNEPAHIMKW 30 (144)
T ss_dssp EEEEEECSCHHHHHHHHHCHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHCCHHHHhhc
Confidence 35677899999999999999999999
No 161
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=21.42 E-value=18 Score=28.97 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=26.0
Q ss_pred CCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 004271 200 PNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRA 236 (764)
Q Consensus 200 ~~Cg~p~~~~~~s~~~e~~~L~~EN~~Lk~E~~r~~~ 236 (764)
..|+.|+.--..-+ |.+.|.+|-++|+.|++.++.
T Consensus 21 ~DC~~P~~~~rTLL--Ei~KL~LEIQKL~~EL~glsk 55 (65)
T 2yf2_A 21 SDCHVPTEDVKTLL--EIRKLFLEIQKLKVELQGLSK 55 (65)
T ss_dssp HHHTSCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHH--HHHHHHHHHHHHHHHHcchhH
Confidence 45777764333345 889999999999999997764
No 162
>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5
Probab=20.86 E-value=36 Score=32.14 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=23.8
Q ss_pred EEeeecccChhHHHHhhhcccccchhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
..+..++.||++||++|-|+++..+|-
T Consensus 25 ~~~r~i~Ap~e~Vw~altdpe~~~~W~ 51 (178)
T 1xuv_A 25 IITREFDAPRELVFKAFTDPDLYTQWI 51 (178)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHTTTC
T ss_pred EEEEEECCCHHHHHHHhCCHHHHHhCC
Confidence 345688999999999999999999993
No 163
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=20.81 E-value=48 Score=31.68 Aligned_cols=29 Identities=14% Similarity=0.073 Sum_probs=26.5
Q ss_pred EEEeeecccChhHHHHhhhcccccchhhh
Q 004271 584 AVSSVWLPVSPNVLFDFLRDEAHRNEWDI 612 (764)
Q Consensus 584 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 612 (764)
...|+.++.||+.||+++.|-...++|--
T Consensus 5 v~~si~I~a~~~~v~~lv~Dv~~~p~w~p 33 (169)
T 3tvq_A 5 TDNSIVVNAPFELVWDVTNDIEAWPELFS 33 (169)
T ss_dssp EEEEEEESSCHHHHHHHHTCGGGHHHHCT
T ss_pred EEEEEEecCCHHHHHHHHHhhhHHHHHHh
Confidence 46789999999999999999999999984
No 164
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.81 E-value=43 Score=28.67 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCCcccCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcceEeecc
Q 004271 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWF 157 (764)
Q Consensus 110 rr~RtrfT~~Ql~~LE~~F~~~~yP~~~~R~eLA~~LgLserQVkvWF 157 (764)
......+|+.|.++|.-.++-. ..+++|..||++++-|+...
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~ 65 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSL 65 (90)
T ss_dssp -----CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHH
Confidence 3445679999999998877332 36789999999998887543
No 165
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.78 E-value=2.6e+02 Score=22.62 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004271 216 EEQQLRIENARLKAEVEKLRAA 237 (764)
Q Consensus 216 e~~~L~~EN~~Lk~E~~r~~~~ 237 (764)
+..+|..||..|+.|+.++...
T Consensus 38 ~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777666543
No 166
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.72 E-value=1.3e+02 Score=27.31 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc
Q 004271 172 ENSLLKSEIEKLREENKAMREAINK 196 (764)
Q Consensus 172 e~~~l~~e~~~l~~en~~l~e~~~~ 196 (764)
....|.++..+|+-||+.|+..+++
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999876
No 167
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.70 E-value=1.5e+02 Score=21.81 Aligned_cols=8 Identities=50% Similarity=0.667 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 004271 220 LRIENARL 227 (764)
Q Consensus 220 L~~EN~~L 227 (764)
|+.||..|
T Consensus 26 Lk~eN~eL 33 (37)
T 1t6f_A 26 LKKENKEL 33 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHHH
Confidence 44444333
No 168
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5
Probab=20.48 E-value=36 Score=30.93 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=24.4
Q ss_pred EEeeecccChhHHHHhhhcccccchhh
Q 004271 585 VSSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 585 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
..+..++.||++||+.|-|..+..+|-
T Consensus 8 ~~~~~i~Ap~e~Vw~altd~~~~~~W~ 34 (146)
T 1xn5_A 8 KKEVRFNAPIEKVWEAVSTSEGLAFWF 34 (146)
T ss_dssp EEEEEESSCHHHHHHHTTSHHHHHTTS
T ss_pred EEEEEEcCCHHHHHHHHhChhHHHHhc
Confidence 467888999999999999999999994
No 169
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.05 E-value=36 Score=26.97 Aligned_cols=16 Identities=50% Similarity=0.563 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 004271 177 KSEIEKLREENKAMRE 192 (764)
Q Consensus 177 ~~e~~~l~~en~~l~e 192 (764)
..++++|+.||..++.
T Consensus 18 ~~d~eaLk~E~~eLk~ 33 (53)
T 2yy0_A 18 NPEIELLRLELAEMKE 33 (53)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3556666666655553
No 170
>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0
Probab=20.00 E-value=1.9e+02 Score=27.01 Aligned_cols=26 Identities=4% Similarity=-0.002 Sum_probs=23.3
Q ss_pred EeeecccChhHHHHhhhcccccchhh
Q 004271 586 SSVWLPVSPNVLFDFLRDEAHRNEWD 611 (764)
Q Consensus 586 tS~wLpv~p~~vf~fLrd~~~R~eWd 611 (764)
-+.-++.||++||+.|-|+++..+|=
T Consensus 17 ~~r~i~Ap~e~Vw~a~Tdpe~l~~W~ 42 (168)
T 3uid_A 17 ITAEFAAPVTRIWQIYADPRQLEKVW 42 (168)
T ss_dssp EEEEESSCHHHHHHHHHSHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHhCCHHHHhhEe
Confidence 46678999999999999999999993
Done!