Query 004272
Match_columns 764
No_of_seqs 566 out of 2578
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 20:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 9.5E-95 2.1E-99 838.8 37.2 424 322-748 240-669 (670)
2 KOG4280 Kinesin-like protein [ 100.0 1.2E-85 2.6E-90 739.9 28.3 355 392-751 4-369 (574)
3 KOG0245 Kinesin-like protein [ 100.0 4E-85 8.6E-90 748.3 25.0 359 393-755 4-385 (1221)
4 KOG0243 Kinesin-like protein [ 100.0 8.7E-83 1.9E-87 742.8 29.8 359 391-751 47-424 (1041)
5 PLN03188 kinesin-12 family pro 100.0 5.3E-80 1.1E-84 725.1 39.7 347 392-750 97-472 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 1.4E-79 3E-84 671.1 36.9 319 394-719 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 2.5E-78 5.5E-83 660.9 38.1 320 393-719 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 1.3E-78 2.9E-83 666.2 27.3 330 392-729 6-340 (607)
9 cd01368 KISc_KIF23_like Kinesi 100.0 3.1E-77 6.7E-82 654.1 37.7 314 394-717 2-345 (345)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.1E-75 2.3E-80 645.0 39.3 327 393-723 1-353 (356)
11 KOG0242 Kinesin-like protein [ 100.0 8.9E-77 1.9E-81 691.2 30.5 349 393-749 6-363 (675)
12 cd01367 KISc_KIF2_like Kinesin 100.0 2.4E-75 5.1E-80 634.0 35.3 313 393-717 1-322 (322)
13 cd01376 KISc_KID_like Kinesin 100.0 6.1E-75 1.3E-79 630.1 37.3 313 394-717 1-319 (319)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.7E-74 5.9E-79 632.9 39.4 330 393-724 2-348 (352)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.6E-74 5.6E-79 626.7 38.0 320 393-719 2-325 (325)
16 cd01371 KISc_KIF3 Kinesin moto 100.0 3.6E-74 7.9E-79 627.4 38.6 324 393-719 1-333 (333)
17 cd01366 KISc_C_terminal Kinesi 100.0 5.7E-74 1.2E-78 624.9 40.0 324 392-722 1-329 (329)
18 KOG0241 Kinesin-like protein [ 100.0 2.6E-75 5.7E-80 655.3 28.1 356 392-752 3-385 (1714)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 5.6E-74 1.2E-78 623.1 37.1 314 394-719 1-321 (321)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 1.6E-73 3.5E-78 624.2 37.9 320 394-720 2-341 (341)
21 cd01375 KISc_KIF9_like Kinesin 100.0 2.7E-73 5.8E-78 620.8 37.3 319 394-717 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 9.6E-70 2.1E-74 591.0 39.5 320 394-717 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 1.9E-69 4.1E-74 590.6 38.8 325 394-725 1-334 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 2.4E-69 5.2E-74 589.5 25.6 318 400-719 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 2.7E-66 5.8E-71 581.0 25.8 330 390-724 28-441 (809)
26 KOG0246 Kinesin-like protein [ 100.0 1E-63 2.2E-68 546.7 30.4 326 393-724 208-546 (676)
27 KOG0244 Kinesin-like protein [ 100.0 8.7E-64 1.9E-68 575.8 9.4 341 401-751 1-350 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.5E-59 5.4E-64 540.1 29.4 336 392-744 21-363 (568)
29 cd01363 Motor_domain Myosin an 100.0 1E-49 2.2E-54 401.0 20.9 176 453-698 8-186 (186)
30 KOG2046 Calponin [Cytoskeleton 99.9 7.2E-27 1.6E-31 230.3 12.9 139 22-174 1-143 (193)
31 COG5199 SCP1 Calponin [Cytoske 99.8 3.5E-19 7.6E-24 167.2 8.9 109 41-168 13-124 (178)
32 cd00014 CH Calponin homology d 99.6 8.9E-16 1.9E-20 139.8 8.3 103 42-160 2-106 (107)
33 COG5261 IQG1 Protein involved 99.6 2.5E-15 5.4E-20 172.2 8.3 114 34-165 37-153 (1054)
34 KOG2996 Rho guanine nucleotide 99.5 1.4E-14 2.9E-19 160.5 7.8 117 44-170 5-129 (865)
35 KOG2128 Ras GTPase-activating 99.5 1.6E-14 3.5E-19 173.8 9.1 104 41-162 42-148 (1401)
36 smart00033 CH Calponin homolog 99.5 3.2E-14 6.9E-19 128.4 7.9 99 43-156 2-103 (103)
37 KOG0532 Leucine-rich repeat (L 99.4 2.5E-13 5.5E-18 152.1 8.1 109 41-159 572-685 (722)
38 PF00307 CH: Calponin homology 99.4 1.4E-12 3.1E-17 118.7 8.9 106 43-161 1-108 (108)
39 COG5059 KIP1 Kinesin-like prot 99.1 5.6E-13 1.2E-17 155.3 -11.9 268 379-663 292-566 (568)
40 PF11971 CAMSAP_CH: CAMSAP CH 97.9 1.5E-05 3.3E-10 70.6 5.0 71 63-142 8-83 (85)
41 KOG0046 Ca2+-binding actin-bun 97.6 5.2E-05 1.1E-09 85.2 3.9 105 42-156 120-230 (627)
42 PF06395 CDC24: CDC24 Calponin 97.2 0.0012 2.5E-08 58.9 7.2 80 68-156 3-88 (89)
43 COG0556 UvrB Helicase subunit 94.4 0.076 1.7E-06 61.0 6.5 95 436-535 3-101 (663)
44 TIGR01242 26Sp45 26S proteasom 93.3 0.16 3.4E-06 56.8 6.5 19 469-487 156-174 (364)
45 PF00308 Bac_DnaA: Bacterial d 91.9 0.071 1.5E-06 55.5 1.3 51 436-488 3-53 (219)
46 COG2805 PilT Tfp pilus assembl 91.3 0.095 2.1E-06 56.7 1.6 31 457-487 113-143 (353)
47 PRK03992 proteasome-activating 91.3 0.44 9.5E-06 53.9 7.0 18 469-486 165-182 (389)
48 KOG0046 Ca2+-binding actin-bun 91.3 0.48 1E-05 54.4 7.1 86 43-144 390-479 (627)
49 PRK06893 DNA replication initi 89.6 0.23 4.9E-06 51.9 2.6 48 436-488 11-58 (229)
50 PRK08084 DNA replication initi 89.0 0.24 5.1E-06 52.0 2.2 48 436-488 17-64 (235)
51 PRK12377 putative replication 88.8 0.29 6.2E-06 52.1 2.6 49 439-488 72-120 (248)
52 PRK06620 hypothetical protein; 88.7 0.16 3.5E-06 52.7 0.7 50 436-488 11-63 (214)
53 COG5069 SAC6 Ca2+-binding acti 88.4 0.57 1.2E-05 53.2 4.7 82 43-134 127-209 (612)
54 COG2804 PulE Type II secretory 88.3 0.22 4.8E-06 57.4 1.5 31 458-488 247-277 (500)
55 PRK08116 hypothetical protein; 86.9 0.41 9E-06 51.4 2.5 51 437-488 81-133 (268)
56 PRK14086 dnaA chromosomal repl 86.8 0.28 6E-06 58.3 1.2 52 435-488 282-333 (617)
57 PRK05642 DNA replication initi 86.5 0.46 9.9E-06 49.9 2.6 50 436-488 14-64 (234)
58 PRK07952 DNA replication prote 86.3 0.54 1.2E-05 49.9 3.0 50 438-488 69-118 (244)
59 PRK14088 dnaA chromosomal repl 86.2 0.38 8.2E-06 55.4 1.9 51 435-488 99-149 (440)
60 TIGR03420 DnaA_homol_Hda DnaA 85.9 0.58 1.3E-05 48.0 2.9 47 436-487 10-56 (226)
61 PRK08903 DnaA regulatory inact 85.6 0.58 1.2E-05 48.4 2.7 49 436-488 13-61 (227)
62 TIGR00362 DnaA chromosomal rep 85.5 0.4 8.7E-06 54.3 1.7 52 435-488 104-155 (405)
63 PRK06835 DNA replication prote 84.6 0.44 9.6E-06 52.8 1.4 37 451-488 166-202 (329)
64 PRK00149 dnaA chromosomal repl 84.2 0.47 1E-05 54.6 1.4 52 435-488 116-167 (450)
65 PRK14087 dnaA chromosomal repl 84.1 0.52 1.1E-05 54.4 1.7 50 437-488 111-160 (450)
66 PRK09087 hypothetical protein; 83.7 0.53 1.1E-05 49.3 1.4 48 436-488 16-63 (226)
67 TIGR02928 orc1/cdc6 family rep 83.7 0.75 1.6E-05 50.9 2.7 39 448-486 18-57 (365)
68 PTZ00454 26S protease regulato 82.9 3.2 7E-05 47.2 7.4 50 437-486 141-196 (398)
69 KOG0517 Beta-spectrin [Cytoske 82.1 4.4 9.4E-05 52.9 8.5 83 43-143 50-134 (2473)
70 PRK00411 cdc6 cell division co 81.9 1.1 2.3E-05 50.3 3.1 38 449-486 34-72 (394)
71 smart00053 DYNc Dynamin, GTPas 81.8 2 4.2E-05 45.6 4.8 53 567-632 86-138 (240)
72 COG1474 CDC6 Cdc6-related prot 81.6 0.95 2.1E-05 50.9 2.6 32 455-486 27-59 (366)
73 COG1484 DnaC DNA replication p 81.5 1 2.2E-05 48.1 2.6 49 438-488 76-124 (254)
74 COG0593 DnaA ATPase involved i 81.0 0.71 1.5E-05 52.4 1.3 51 436-488 82-132 (408)
75 PRK08939 primosomal protein Dn 80.7 0.94 2E-05 49.7 2.0 51 438-488 124-175 (306)
76 PRK08181 transposase; Validate 79.9 1.1 2.5E-05 48.1 2.3 21 466-488 105-125 (269)
77 PF13245 AAA_19: Part of AAA d 79.8 0.82 1.8E-05 39.6 1.0 27 461-488 3-29 (76)
78 cd00009 AAA The AAA+ (ATPases 79.8 1.1 2.3E-05 41.2 1.9 27 460-486 10-36 (151)
79 PRK08727 hypothetical protein; 79.5 1.2 2.6E-05 46.6 2.4 46 436-488 14-60 (233)
80 PF04851 ResIII: Type III rest 79.4 1.1 2.5E-05 43.5 2.0 31 458-488 13-44 (184)
81 PRK06526 transposase; Provisio 79.2 0.75 1.6E-05 49.1 0.7 21 466-488 97-117 (254)
82 PRK13894 conjugal transfer ATP 77.9 2.1 4.6E-05 47.2 3.7 28 458-486 138-165 (319)
83 COG5008 PilU Tfp pilus assembl 77.6 1.5 3.2E-05 47.0 2.3 34 454-487 110-145 (375)
84 PRK10436 hypothetical protein; 77.3 1.1 2.4E-05 52.0 1.3 29 459-487 208-236 (462)
85 cd00046 DEXDc DEAD-like helica 77.2 0.83 1.8E-05 41.5 0.2 17 472-488 3-19 (144)
86 TIGR02533 type_II_gspE general 77.0 1.2 2.6E-05 51.9 1.6 30 459-488 232-261 (486)
87 TIGR02538 type_IV_pilB type IV 76.9 1.1 2.3E-05 53.4 1.1 30 459-488 306-335 (564)
88 PTZ00112 origin recognition co 76.8 0.95 2.1E-05 55.7 0.6 34 453-486 763-798 (1164)
89 PRK12402 replication factor C 76.2 1.3 2.7E-05 48.4 1.4 42 439-487 13-54 (337)
90 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.0 29 0.00062 33.3 10.5 73 316-391 59-131 (132)
91 TIGR01420 pilT_fam pilus retra 75.4 1.4 3E-05 49.1 1.4 28 460-487 113-140 (343)
92 PF13401 AAA_22: AAA domain; P 74.8 0.85 1.9E-05 42.3 -0.3 18 469-486 4-21 (131)
93 KOG3631 Alpha-parvin and relat 74.8 9.9 0.00022 40.6 7.3 112 32-161 81-196 (365)
94 PF06294 DUF1042: Domain of Un 74.2 4 8.6E-05 40.6 4.2 92 47-157 2-99 (158)
95 smart00382 AAA ATPases associa 74.0 1.1 2.4E-05 40.6 0.2 19 470-488 3-21 (148)
96 PRK12422 chromosomal replicati 73.7 2 4.3E-05 49.6 2.2 52 435-488 105-160 (445)
97 cd01131 PilT Pilus retraction 73.4 1.2 2.5E-05 45.5 0.2 19 469-487 1-19 (198)
98 TIGR02525 plasmid_TraJ plasmid 73.0 1.8 3.8E-05 48.9 1.6 27 460-487 141-167 (372)
99 TIGR02524 dot_icm_DotB Dot/Icm 72.9 1.7 3.8E-05 48.7 1.4 23 465-487 130-152 (358)
100 PF00270 DEAD: DEAD/DEAH box h 72.5 2.3 5E-05 41.0 2.1 28 459-488 6-33 (169)
101 PRK06921 hypothetical protein; 72.5 2.6 5.6E-05 45.3 2.6 37 452-488 97-136 (266)
102 cd01129 PulE-GspE PulE/GspE Th 72.2 1.9 4.2E-05 46.2 1.6 29 459-487 70-98 (264)
103 PF13604 AAA_30: AAA domain; P 72.2 1.7 3.7E-05 44.3 1.1 29 459-487 8-36 (196)
104 PF01637 Arch_ATPase: Archaeal 71.8 1.4 3E-05 44.6 0.4 31 457-487 8-38 (234)
105 PF01935 DUF87: Domain of unkn 71.5 1.3 2.8E-05 45.8 0.1 57 649-706 164-220 (229)
106 PF13191 AAA_16: AAA ATPase do 71.4 1 2.2E-05 44.2 -0.7 33 454-486 9-41 (185)
107 TIGR03015 pepcterm_ATPase puta 71.3 2.6 5.6E-05 44.4 2.3 25 463-487 37-61 (269)
108 KOG0239 Kinesin (KAR3 subfamil 70.9 0.61 1.3E-05 56.3 -2.9 87 435-540 25-111 (670)
109 TIGR02788 VirB11 P-type DNA tr 70.5 6.6 0.00014 43.0 5.3 30 457-487 133-162 (308)
110 PF12846 AAA_10: AAA-like doma 69.8 1.5 3.3E-05 46.3 0.1 19 469-487 1-19 (304)
111 PF01695 IstB_IS21: IstB-like 69.5 2.7 5.8E-05 42.4 1.8 20 469-488 47-66 (178)
112 PTZ00361 26 proteosome regulat 68.9 9.1 0.0002 44.2 6.1 16 471-486 219-234 (438)
113 TIGR00635 ruvB Holliday juncti 68.6 3.2 6.9E-05 44.8 2.3 42 446-487 5-48 (305)
114 PF06309 Torsin: Torsin; Inte 68.3 2.1 4.5E-05 41.0 0.7 18 469-486 53-70 (127)
115 PF00437 T2SE: Type II/IV secr 67.9 2 4.3E-05 45.7 0.5 29 457-486 116-144 (270)
116 KOG4603 TBP-1 interacting prot 67.4 51 0.0011 33.2 9.9 19 372-390 162-180 (201)
117 PF05496 RuvB_N: Holliday junc 66.1 6.3 0.00014 41.5 3.7 43 443-485 22-66 (233)
118 PRK13900 type IV secretion sys 66.1 3.2 6.9E-05 46.1 1.7 29 457-486 149-177 (332)
119 PF00448 SRP54: SRP54-type pro 65.8 2 4.3E-05 44.1 -0.0 17 471-487 3-19 (196)
120 PF13207 AAA_17: AAA domain; P 65.6 2.6 5.6E-05 38.7 0.7 16 471-486 1-16 (121)
121 TIGR02782 TrbB_P P-type conjug 65.6 3.4 7.4E-05 45.2 1.7 29 458-487 122-150 (299)
122 KOG0989 Replication factor C, 65.6 4.6 0.0001 44.2 2.7 27 460-486 48-74 (346)
123 PF13479 AAA_24: AAA domain 65.3 2.7 5.8E-05 43.4 0.9 20 469-488 3-22 (213)
124 PRK12723 flagellar biosynthesi 65.2 5.2 0.00011 45.4 3.2 19 469-487 174-192 (388)
125 PF05970 PIF1: PIF1-like helic 64.4 4 8.6E-05 45.8 2.0 37 447-486 3-39 (364)
126 PRK13851 type IV secretion sys 64.1 3.7 8.1E-05 45.8 1.7 31 457-488 151-181 (344)
127 PF13086 AAA_11: AAA domain; P 64.1 2.8 6.1E-05 42.3 0.7 28 460-488 9-36 (236)
128 TIGR03499 FlhF flagellar biosy 62.9 5.8 0.00013 42.9 2.9 18 471-488 196-213 (282)
129 PF05673 DUF815: Protein of un 62.5 4.1 9E-05 43.3 1.6 130 438-603 24-156 (249)
130 TIGR00631 uvrb excinuclease AB 62.5 9.4 0.0002 46.3 4.8 92 438-534 2-97 (655)
131 PLN03137 ATP-dependent DNA hel 62.4 35 0.00077 43.8 9.8 27 458-486 466-492 (1195)
132 PF02562 PhoH: PhoH-like prote 61.8 5.5 0.00012 41.3 2.3 25 461-487 13-37 (205)
133 cd01130 VirB11-like_ATPase Typ 61.5 4.6 0.0001 40.6 1.8 30 457-487 14-43 (186)
134 PF03215 Rad17: Rad17 cell cyc 61.4 4.6 9.9E-05 47.6 1.9 31 456-486 30-62 (519)
135 PF00004 AAA: ATPase family as 61.1 3.2 7E-05 38.1 0.5 15 472-486 1-15 (132)
136 COG4962 CpaF Flp pilus assembl 60.8 4.5 9.7E-05 45.0 1.6 99 457-577 162-292 (355)
137 KOG0335 ATP-dependent RNA heli 60.1 3.5 7.5E-05 47.6 0.6 67 460-532 104-189 (482)
138 PRK06547 hypothetical protein; 59.2 7.4 0.00016 39.0 2.7 29 458-486 4-32 (172)
139 PHA02544 44 clamp loader, smal 59.1 4.8 0.0001 43.6 1.5 22 466-487 39-61 (316)
140 PRK13342 recombination factor 59.0 5.4 0.00012 45.5 1.9 39 449-487 16-54 (413)
141 PRK13833 conjugal transfer pro 58.7 4.8 0.0001 44.6 1.4 27 459-486 135-161 (323)
142 TIGR03819 heli_sec_ATPase heli 58.4 9.2 0.0002 42.6 3.6 30 457-487 167-196 (340)
143 smart00487 DEXDc DEAD-like hel 58.2 5.8 0.00013 38.3 1.8 28 460-488 16-43 (201)
144 KOG0727 26S proteasome regulat 57.8 81 0.0018 34.0 10.0 79 439-517 153-250 (408)
145 PRK04195 replication factor C 57.2 7.4 0.00016 45.3 2.7 37 450-486 19-56 (482)
146 PF08581 Tup_N: Tup N-terminal 56.8 68 0.0015 28.3 7.9 46 321-366 30-75 (79)
147 PF13671 AAA_33: AAA domain; P 56.6 4.6 0.0001 38.0 0.7 16 471-486 1-16 (143)
148 PF00580 UvrD-helicase: UvrD/R 55.9 4 8.8E-05 43.4 0.2 21 468-488 12-32 (315)
149 cd00268 DEADc DEAD-box helicas 55.9 6.9 0.00015 39.2 1.9 26 459-486 28-53 (203)
150 COG1201 Lhr Lhr-like helicases 55.8 8.3 0.00018 47.6 2.8 26 459-486 29-54 (814)
151 PTZ00424 helicase 45; Provisio 55.6 6.2 0.00014 44.2 1.7 27 458-486 56-82 (401)
152 TIGR02881 spore_V_K stage V sp 54.8 9.7 0.00021 40.4 2.9 19 469-487 42-60 (261)
153 PF00910 RNA_helicase: RNA hel 54.2 3.5 7.6E-05 37.7 -0.5 15 472-486 1-15 (107)
154 PRK00080 ruvB Holliday junctio 54.1 8.5 0.00018 42.3 2.4 41 447-487 27-69 (328)
155 PF01580 FtsK_SpoIIIE: FtsK/Sp 53.7 3.9 8.4E-05 41.5 -0.3 17 471-487 40-56 (205)
156 PLN03025 replication factor C 53.6 7.6 0.00016 42.6 1.9 36 450-488 18-53 (319)
157 PF13238 AAA_18: AAA domain; P 53.6 5.1 0.00011 36.6 0.5 15 472-486 1-15 (129)
158 PF00063 Myosin_head: Myosin h 53.5 6.9 0.00015 47.6 1.7 35 452-486 67-102 (689)
159 PRK11192 ATP-dependent RNA hel 52.7 7.5 0.00016 44.3 1.7 25 459-485 30-54 (434)
160 TIGR00348 hsdR type I site-spe 52.6 9.8 0.00021 46.3 2.8 33 455-488 245-282 (667)
161 COG1222 RPT1 ATP-dependent 26S 52.6 10 0.00022 42.5 2.5 46 471-517 187-246 (406)
162 PRK11776 ATP-dependent RNA hel 51.8 9.8 0.00021 43.8 2.5 25 459-485 33-57 (460)
163 PRK09183 transposase/IS protei 51.8 8.3 0.00018 41.2 1.8 21 466-488 101-121 (259)
164 PRK11331 5-methylcytosine-spec 51.5 9.3 0.0002 44.2 2.2 27 458-486 185-211 (459)
165 PHA00729 NTP-binding motif con 51.4 11 0.00025 39.6 2.7 30 459-488 7-36 (226)
166 KOG0926 DEAH-box RNA helicase 51.1 11 0.00023 46.1 2.7 25 559-583 480-504 (1172)
167 PRK04837 ATP-dependent RNA hel 51.0 7.9 0.00017 44.1 1.5 26 459-486 37-62 (423)
168 PRK13764 ATPase; Provisional 51.0 6.8 0.00015 46.9 1.1 20 469-488 257-276 (602)
169 KOG0742 AAA+-type ATPase [Post 50.8 18 0.00039 41.2 4.2 44 471-516 386-443 (630)
170 PRK00440 rfc replication facto 50.4 7.8 0.00017 41.7 1.4 21 466-486 35-55 (319)
171 PRK10590 ATP-dependent RNA hel 50.2 9.2 0.0002 44.1 1.9 26 459-486 30-55 (456)
172 PF06414 Zeta_toxin: Zeta toxi 50.1 6.4 0.00014 40.0 0.6 20 467-486 13-32 (199)
173 PRK10536 hypothetical protein; 49.0 8.2 0.00018 41.5 1.2 42 437-487 51-92 (262)
174 PRK13341 recombination factor 48.6 11 0.00023 46.3 2.3 40 449-488 32-71 (725)
175 PF07724 AAA_2: AAA domain (Cd 48.6 6.7 0.00015 39.3 0.4 17 470-486 4-20 (171)
176 smart00763 AAA_PrkA PrkA AAA d 48.4 16 0.00035 41.1 3.4 69 436-509 44-142 (361)
177 PRK00771 signal recognition pa 48.3 18 0.00039 41.8 3.9 21 468-488 94-114 (437)
178 PF15372 DUF4600: Domain of un 48.2 1.6E+02 0.0035 28.5 9.5 87 315-401 7-115 (129)
179 PF07693 KAP_NTPase: KAP famil 48.2 9.9 0.00021 41.2 1.7 20 467-486 18-37 (325)
180 cd01383 MYSc_type_VIII Myosin 48.0 15 0.00032 44.8 3.3 35 452-486 74-109 (677)
181 PRK10884 SH3 domain-containing 47.9 65 0.0014 33.5 7.5 25 320-344 97-121 (206)
182 KOG2373 Predicted mitochondria 47.6 17 0.00036 40.6 3.3 29 459-488 261-292 (514)
183 PF07728 AAA_5: AAA domain (dy 47.5 7.3 0.00016 36.7 0.5 15 472-486 2-16 (139)
184 KOG0736 Peroxisome assembly fa 47.3 19 0.0004 44.1 3.8 24 493-516 783-806 (953)
185 PHA00276 phage lambda Rz-like 47.2 50 0.0011 32.3 6.0 45 342-406 50-95 (144)
186 PRK11889 flhF flagellar biosyn 47.1 14 0.00029 42.4 2.6 18 470-487 242-259 (436)
187 TIGR02903 spore_lon_C ATP-depe 47.0 13 0.00027 44.9 2.5 28 459-486 165-192 (615)
188 cd00124 MYSc Myosin motor doma 46.8 14 0.00031 44.9 3.0 35 452-486 68-103 (679)
189 PRK10416 signal recognition pa 46.8 16 0.00035 40.3 3.1 19 469-487 114-132 (318)
190 COG1223 Predicted ATPase (AAA+ 46.4 7.5 0.00016 41.8 0.4 47 470-516 152-211 (368)
191 smart00242 MYSc Myosin. Large 46.1 15 0.00032 44.9 2.9 35 452-486 74-109 (677)
192 PRK14974 cell division protein 45.6 18 0.00038 40.4 3.2 21 467-487 138-158 (336)
193 cd01385 MYSc_type_IX Myosin mo 45.5 17 0.00036 44.5 3.2 35 452-486 76-111 (692)
194 cd01381 MYSc_type_VII Myosin m 45.5 18 0.00038 44.1 3.4 35 452-486 68-103 (671)
195 PRK14722 flhF flagellar biosyn 45.4 7.8 0.00017 43.8 0.4 19 469-487 137-155 (374)
196 TIGR00763 lon ATP-dependent pr 45.1 42 0.00091 41.6 6.6 38 449-486 324-364 (775)
197 cd01384 MYSc_type_XI Myosin mo 45.1 17 0.00037 44.3 3.2 34 453-486 71-105 (674)
198 cd01378 MYSc_type_I Myosin mot 45.1 18 0.00039 44.1 3.4 35 452-486 68-103 (674)
199 COG1219 ClpX ATP-dependent pro 44.9 9.3 0.0002 42.2 0.8 16 470-485 98-113 (408)
200 CHL00081 chlI Mg-protoporyphyr 44.7 8.4 0.00018 43.2 0.5 47 435-488 11-57 (350)
201 COG2256 MGS1 ATPase related to 44.5 13 0.00028 42.2 1.9 37 449-485 28-64 (436)
202 TIGR00614 recQ_fam ATP-depende 44.4 14 0.00029 42.9 2.2 27 458-486 17-43 (470)
203 KOG3859 Septins (P-loop GTPase 44.2 12 0.00026 40.5 1.5 28 459-486 31-59 (406)
204 PRK06696 uridine kinase; Valid 44.1 21 0.00045 37.0 3.3 34 453-486 6-39 (223)
205 TIGR00376 DNA helicase, putati 44.1 12 0.00027 45.2 1.8 28 460-488 165-192 (637)
206 PRK11448 hsdR type I restricti 44.1 11 0.00023 48.7 1.3 30 458-488 423-452 (1123)
207 TIGR01389 recQ ATP-dependent D 44.0 14 0.00031 44.0 2.3 27 458-486 19-45 (591)
208 PRK05703 flhF flagellar biosyn 44.0 16 0.00034 42.0 2.6 18 471-488 223-240 (424)
209 cd01387 MYSc_type_XV Myosin mo 43.6 20 0.00042 43.8 3.4 35 452-486 69-104 (677)
210 TIGR00064 ftsY signal recognit 43.2 19 0.00042 38.8 3.0 19 469-487 72-90 (272)
211 KOG3000 Microtubule-binding pr 42.9 61 0.0013 35.5 6.6 103 42-166 16-121 (295)
212 TIGR02640 gas_vesic_GvpN gas v 42.9 17 0.00036 38.8 2.4 27 458-486 12-38 (262)
213 PF05729 NACHT: NACHT domain 42.5 9.6 0.00021 36.3 0.4 17 471-487 2-18 (166)
214 PRK10865 protein disaggregatio 42.3 17 0.00036 45.6 2.6 45 438-486 565-615 (857)
215 KOG2129 Uncharacterized conser 42.3 5.9E+02 0.013 29.3 14.0 21 383-403 328-348 (552)
216 cd01380 MYSc_type_V Myosin mot 42.3 19 0.00042 43.9 3.1 34 453-486 69-103 (691)
217 KOG0354 DEAD-box like helicase 41.7 18 0.00039 44.1 2.6 43 441-486 44-93 (746)
218 cd01377 MYSc_type_II Myosin mo 41.7 20 0.00043 43.9 3.1 35 452-486 73-108 (693)
219 TIGR02902 spore_lonB ATP-depen 41.6 17 0.00036 43.1 2.3 42 438-486 62-103 (531)
220 KOG2543 Origin recognition com 41.6 9.1 0.0002 43.2 0.2 17 470-486 31-47 (438)
221 PHA02244 ATPase-like protein 41.5 21 0.00046 40.4 3.0 24 462-487 114-137 (383)
222 KOG1962 B-cell receptor-associ 41.5 1.2E+02 0.0026 31.8 8.2 22 368-389 189-210 (216)
223 cd01382 MYSc_type_VI Myosin mo 41.2 20 0.00043 44.0 3.0 34 453-486 74-108 (717)
224 smart00488 DEXDc2 DEAD-like he 41.2 16 0.00034 39.8 1.9 38 446-488 9-46 (289)
225 smart00489 DEXDc3 DEAD-like he 41.2 16 0.00034 39.8 1.9 38 446-488 9-46 (289)
226 PF05377 FlaC_arch: Flagella a 40.8 1.4E+02 0.003 24.6 6.7 38 316-353 7-44 (55)
227 TIGR01618 phage_P_loop phage n 40.8 11 0.00023 39.6 0.5 20 469-488 12-31 (220)
228 TIGR01241 FtsH_fam ATP-depende 40.8 15 0.00033 42.8 1.9 78 437-514 51-146 (495)
229 TIGR02237 recomb_radB DNA repa 40.8 15 0.00033 37.1 1.7 25 462-486 2-29 (209)
230 PRK01297 ATP-dependent RNA hel 40.5 17 0.00038 42.0 2.3 26 459-486 116-141 (475)
231 TIGR00602 rad24 checkpoint pro 40.5 13 0.00027 45.0 1.1 40 448-487 87-128 (637)
232 PHA02653 RNA helicase NPH-II; 40.4 21 0.00045 43.6 2.9 33 448-485 163-195 (675)
233 cd01120 RecA-like_NTPases RecA 40.4 9.3 0.0002 36.1 -0.0 16 472-487 2-17 (165)
234 PF12775 AAA_7: P-loop contain 40.4 12 0.00027 40.2 1.0 28 459-487 24-51 (272)
235 PRK00131 aroK shikimate kinase 40.1 13 0.00028 36.0 0.9 17 470-486 5-21 (175)
236 cd01123 Rad51_DMC1_radA Rad51_ 40.0 18 0.00038 37.4 2.0 28 459-486 6-36 (235)
237 PF13555 AAA_29: P-loop contai 39.9 9.3 0.0002 32.1 -0.1 15 472-486 26-40 (62)
238 TIGR01359 UMP_CMP_kin_fam UMP- 39.9 12 0.00026 37.0 0.7 15 472-486 2-16 (183)
239 PRK04328 hypothetical protein; 39.8 20 0.00043 37.9 2.4 27 459-485 10-39 (249)
240 PRK11034 clpA ATP-dependent Cl 39.3 22 0.00049 43.9 3.0 37 450-486 463-505 (758)
241 PF15290 Syntaphilin: Golgi-lo 39.3 1.3E+02 0.0029 32.5 8.3 10 380-389 157-166 (305)
242 PRK04537 ATP-dependent RNA hel 39.0 16 0.00036 43.5 1.8 26 459-486 38-63 (572)
243 PRK11664 ATP-dependent RNA hel 38.9 18 0.0004 45.0 2.2 32 453-486 6-37 (812)
244 TIGR02688 conserved hypothetic 38.8 23 0.00049 40.9 2.7 55 456-513 198-252 (449)
245 PF02456 Adeno_IVa2: Adenoviru 38.6 14 0.00031 40.6 1.1 39 471-509 89-139 (369)
246 PRK12724 flagellar biosynthesi 38.3 23 0.0005 40.7 2.7 19 469-487 223-241 (432)
247 PRK14723 flhF flagellar biosyn 38.3 24 0.00053 43.4 3.1 18 470-487 186-203 (767)
248 PF13173 AAA_14: AAA domain 37.8 12 0.00025 35.2 0.2 16 471-486 4-19 (128)
249 cd02021 GntK Gluconate kinase 37.7 13 0.00029 35.4 0.6 15 472-486 2-16 (150)
250 PRK11057 ATP-dependent DNA hel 37.7 22 0.00048 42.7 2.6 26 459-486 32-57 (607)
251 COG1419 FlhF Flagellar GTP-bin 37.6 22 0.00047 40.6 2.3 21 559-579 258-278 (407)
252 PF00735 Septin: Septin; Inte 37.5 12 0.00025 40.7 0.2 20 467-486 2-21 (281)
253 COG1125 OpuBA ABC-type proline 37.4 12 0.00025 40.4 0.2 29 686-722 184-212 (309)
254 PRK07261 topology modulation p 37.4 14 0.0003 36.8 0.7 15 472-486 3-17 (171)
255 KOG1803 DNA helicase [Replicat 37.3 25 0.00053 41.9 2.8 25 461-486 194-218 (649)
256 PF13476 AAA_23: AAA domain; P 37.1 12 0.00027 36.8 0.3 17 470-486 20-36 (202)
257 PRK06067 flagellar accessory p 36.9 23 0.00051 36.7 2.3 28 459-486 12-42 (234)
258 PRK11634 ATP-dependent RNA hel 36.6 23 0.0005 42.9 2.5 26 459-486 35-60 (629)
259 PRK08118 topology modulation p 36.6 15 0.00032 36.5 0.7 14 472-485 4-17 (167)
260 PLN00206 DEAD-box ATP-dependen 36.5 28 0.00061 40.9 3.2 25 459-485 150-174 (518)
261 PLN00020 ribulose bisphosphate 36.2 27 0.00058 39.7 2.7 78 436-513 110-205 (413)
262 cd01126 TraG_VirD4 The TraG/Tr 36.2 20 0.00043 40.3 1.8 18 472-489 2-19 (384)
263 PHA01747 putative ATP-dependen 35.8 15 0.00032 41.4 0.7 31 457-487 178-208 (425)
264 PF06048 DUF927: Domain of unk 35.7 26 0.00057 37.9 2.6 28 458-486 183-210 (286)
265 cd01428 ADK Adenylate kinase ( 35.7 15 0.00033 36.4 0.7 15 472-486 2-16 (194)
266 cd01379 MYSc_type_III Myosin m 35.7 27 0.00058 42.5 2.8 35 452-486 68-103 (653)
267 KOG1514 Origin recognition com 35.5 24 0.00052 42.7 2.3 38 451-488 402-441 (767)
268 PRK06995 flhF flagellar biosyn 35.4 13 0.00029 43.4 0.2 18 470-487 257-274 (484)
269 TIGR02397 dnaX_nterm DNA polym 35.0 27 0.00058 38.4 2.5 35 449-486 18-53 (355)
270 TIGR02639 ClpA ATP-dependent C 34.7 27 0.00058 43.0 2.7 37 450-486 459-501 (731)
271 PRK10867 signal recognition pa 34.2 36 0.00078 39.3 3.5 19 469-487 100-118 (433)
272 KOG0728 26S proteasome regulat 34.1 2.8E+02 0.0061 30.0 9.6 47 469-516 181-241 (404)
273 PRK09361 radB DNA repair and r 33.9 32 0.00069 35.4 2.7 29 459-487 10-41 (225)
274 cd01850 CDC_Septin CDC/Septin. 33.7 17 0.00036 39.3 0.6 21 466-486 1-21 (276)
275 PF10236 DAP3: Mitochondrial r 33.7 27 0.00059 38.3 2.3 25 464-488 18-42 (309)
276 KOG1853 LIS1-interacting prote 33.5 1.9E+02 0.0042 30.9 8.2 21 255-275 43-63 (333)
277 PRK14963 DNA polymerase III su 33.5 23 0.0005 41.7 1.8 41 439-486 12-53 (504)
278 cd01386 MYSc_type_XVIII Myosin 33.5 31 0.00067 42.7 3.0 35 452-486 68-103 (767)
279 PRK10917 ATP-dependent DNA hel 33.4 30 0.00066 42.2 2.9 40 445-487 261-300 (681)
280 TIGR01313 therm_gnt_kin carboh 33.3 15 0.00032 35.8 0.1 14 472-485 1-14 (163)
281 TIGR02322 phosphon_PhnN phosph 33.3 15 0.00032 36.3 0.2 16 471-486 3-18 (179)
282 TIGR03158 cas3_cyano CRISPR-as 33.2 30 0.00066 38.6 2.6 26 461-486 6-31 (357)
283 CHL00176 ftsH cell division pr 33.1 29 0.00062 42.1 2.5 46 437-486 179-233 (638)
284 PF00931 NB-ARC: NB-ARC domain 33.0 35 0.00077 36.0 3.0 30 457-486 5-36 (287)
285 TIGR03817 DECH_helic helicase/ 32.9 28 0.00062 42.9 2.5 26 459-486 43-68 (742)
286 TIGR03345 VI_ClpV1 type VI sec 32.9 35 0.00075 42.9 3.3 37 450-486 571-613 (852)
287 cd01127 TrwB Bacterial conjuga 32.8 15 0.00032 41.9 0.1 16 471-486 44-59 (410)
288 CHL00181 cbbX CbbX; Provisiona 32.6 18 0.00038 39.4 0.6 15 472-486 62-76 (287)
289 PRK14531 adenylate kinase; Pro 32.6 19 0.00041 36.1 0.7 16 471-486 4-19 (183)
290 PHA02624 large T antigen; Prov 32.3 33 0.00071 41.3 2.7 31 457-487 417-449 (647)
291 KOG0953 Mitochondrial RNA heli 32.1 21 0.00045 42.1 1.0 42 472-513 194-237 (700)
292 cd01394 radB RadB. The archaea 32.1 33 0.00072 35.0 2.5 27 460-486 7-36 (218)
293 cd08539 SAM_PNT-ESE-3-like Ste 32.1 48 0.001 28.9 3.0 41 41-86 8-48 (74)
294 cd00464 SK Shikimate kinase (S 32.0 18 0.00039 34.4 0.5 16 471-486 1-16 (154)
295 TIGR01817 nifA Nif-specific re 32.0 23 0.00049 41.8 1.4 44 438-486 193-236 (534)
296 cd02020 CMPK Cytidine monophos 32.0 20 0.00042 33.7 0.7 15 472-486 2-16 (147)
297 PTZ00110 helicase; Provisional 31.8 25 0.00055 41.6 1.8 25 460-486 160-184 (545)
298 PRK15455 PrkA family serine pr 31.7 33 0.00072 41.1 2.7 43 437-483 71-117 (644)
299 PRK08233 hypothetical protein; 31.7 19 0.00042 35.2 0.6 16 471-486 5-20 (182)
300 KOG0739 AAA+-type ATPase [Post 31.6 20 0.00043 39.3 0.8 77 441-517 133-227 (439)
301 KOG0330 ATP-dependent RNA heli 31.4 28 0.00062 39.4 1.9 26 459-486 90-115 (476)
302 PF00158 Sigma54_activat: Sigm 31.3 32 0.0007 34.3 2.2 28 457-485 11-38 (168)
303 cd00820 PEPCK_HprK Phosphoenol 31.3 18 0.0004 33.6 0.4 17 470-486 16-32 (107)
304 PRK14961 DNA polymerase III su 31.1 32 0.0007 38.5 2.4 41 439-486 14-55 (363)
305 KOG0729 26S proteasome regulat 31.1 24 0.00053 38.1 1.3 46 471-516 213-271 (435)
306 PRK14532 adenylate kinase; Pro 31.0 22 0.00048 35.4 1.0 15 471-485 2-16 (188)
307 PRK06217 hypothetical protein; 30.9 20 0.00043 35.8 0.6 15 472-486 4-18 (183)
308 PRK13767 ATP-dependent helicas 30.8 32 0.0007 43.3 2.5 25 460-486 40-64 (876)
309 PRK01172 ski2-like helicase; P 30.5 32 0.00069 41.8 2.4 23 461-485 31-53 (674)
310 cd01853 Toc34_like Toc34-like 30.4 21 0.00047 37.9 0.8 41 444-486 8-48 (249)
311 TIGR01425 SRP54_euk signal rec 30.3 46 0.00099 38.4 3.4 21 467-487 98-118 (429)
312 COG0630 VirB11 Type IV secreto 30.1 16 0.00036 40.1 -0.1 24 462-487 138-161 (312)
313 PF00038 Filament: Intermediat 30.0 3.5E+02 0.0077 29.3 10.2 13 250-262 170-182 (312)
314 PRK13889 conjugal transfer rel 30.0 27 0.00059 44.4 1.7 29 458-487 352-380 (988)
315 PF00485 PRK: Phosphoribulokin 29.9 18 0.00038 36.6 0.0 15 472-486 2-16 (194)
316 PTZ00014 myosin-A; Provisional 29.9 41 0.00089 42.0 3.2 34 453-486 166-200 (821)
317 TIGR01360 aden_kin_iso1 adenyl 29.9 24 0.00052 34.8 1.0 16 471-486 5-20 (188)
318 PF08614 ATG16: Autophagy prot 29.8 2.3E+02 0.0051 28.8 8.2 21 372-392 165-185 (194)
319 TIGR02880 cbbX_cfxQ probable R 29.7 21 0.00046 38.6 0.6 15 472-486 61-75 (284)
320 PRK05580 primosome assembly pr 29.6 32 0.00068 42.1 2.1 38 444-487 143-180 (679)
321 PRK12726 flagellar biosynthesi 29.5 19 0.00042 40.9 0.3 19 470-488 207-225 (407)
322 PF06745 KaiC: KaiC; InterPro 29.4 32 0.00069 35.4 1.8 25 461-485 8-35 (226)
323 KOG0726 26S proteasome regulat 29.3 36 0.00079 37.3 2.2 49 471-519 221-282 (440)
324 cd01124 KaiC KaiC is a circadi 29.2 25 0.00054 34.6 1.0 15 472-486 2-16 (187)
325 PF10923 DUF2791: P-loop Domai 29.1 44 0.00095 38.4 3.0 35 452-486 32-66 (416)
326 TIGR03689 pup_AAA proteasome A 29.0 20 0.00043 42.3 0.3 16 471-486 218-233 (512)
327 cd02023 UMPK Uridine monophosp 29.0 18 0.00039 36.4 -0.1 15 472-486 2-16 (198)
328 PF03961 DUF342: Protein of un 29.0 4E+02 0.0087 30.8 10.9 29 375-403 392-422 (451)
329 PF02534 T4SS-DNA_transf: Type 29.0 38 0.00082 39.0 2.5 18 470-487 45-62 (469)
330 cd01858 NGP_1 NGP-1. Autoanti 28.9 31 0.00067 33.4 1.6 20 467-486 100-119 (157)
331 KOG2228 Origin recognition com 28.9 63 0.0014 36.3 4.0 32 456-487 35-67 (408)
332 PRK14721 flhF flagellar biosyn 28.8 20 0.00043 41.2 0.2 18 470-487 192-209 (420)
333 TIGR02746 TraC-F-type type-IV 28.8 19 0.00041 44.6 0.0 18 469-486 430-447 (797)
334 cd01983 Fer4_NifH The Fer4_Nif 28.6 21 0.00045 30.3 0.3 17 472-488 2-18 (99)
335 TIGR02030 BchI-ChlI magnesium 28.5 25 0.00053 39.3 0.9 31 458-488 14-44 (337)
336 COG5019 CDC3 Septin family pro 28.5 32 0.00068 38.7 1.7 20 466-485 20-39 (373)
337 cd01393 recA_like RecA is a b 28.4 46 0.001 34.0 2.8 29 459-487 6-37 (226)
338 KOG0652 26S proteasome regulat 28.3 26 0.00056 37.8 1.0 46 471-517 207-266 (424)
339 TIGR03238 dnd_assoc_3 dnd syst 28.3 34 0.00074 40.0 1.9 32 457-488 14-51 (504)
340 TIGR01650 PD_CobS cobaltochela 28.2 33 0.00072 38.1 1.8 42 443-486 38-81 (327)
341 PF04799 Fzo_mitofusin: fzo-li 28.2 1.9E+02 0.0041 29.3 6.8 44 334-377 106-149 (171)
342 CHL00195 ycf46 Ycf46; Provisio 27.9 21 0.00045 41.9 0.2 18 469-486 259-276 (489)
343 TIGR03346 chaperone_ClpB ATP-d 27.9 43 0.00094 42.0 3.0 37 450-486 570-612 (852)
344 PRK04040 adenylate kinase; Pro 27.9 25 0.00054 35.7 0.7 16 471-486 4-19 (188)
345 PRK06762 hypothetical protein; 27.8 26 0.00057 34.0 0.9 15 471-485 4-18 (166)
346 PRK14962 DNA polymerase III su 27.6 40 0.00087 39.3 2.4 41 439-486 12-53 (472)
347 PF07795 DUF1635: Protein of u 27.4 2E+02 0.0044 30.1 7.2 55 332-389 3-57 (214)
348 PRK14951 DNA polymerase III su 27.4 35 0.00075 41.2 1.9 41 439-486 14-55 (618)
349 TIGR02173 cyt_kin_arch cytidyl 27.3 25 0.00055 34.0 0.6 16 471-486 2-17 (171)
350 PF07106 TBPIP: Tat binding pr 27.3 5E+02 0.011 25.6 10.0 16 352-367 120-135 (169)
351 cd02025 PanK Pantothenate kina 27.3 16 0.00034 38.1 -0.9 13 474-486 4-16 (220)
352 PRK14729 miaA tRNA delta(2)-is 27.3 29 0.00063 38.1 1.2 15 471-485 6-20 (300)
353 TIGR03744 traC_PFL_4706 conjug 27.3 20 0.00044 45.1 -0.0 19 468-486 474-492 (893)
354 TIGR03881 KaiC_arch_4 KaiC dom 27.0 43 0.00094 34.4 2.4 27 460-486 8-37 (229)
355 PRK14527 adenylate kinase; Pro 26.7 29 0.00063 34.8 1.0 17 470-486 7-23 (191)
356 PRK14970 DNA polymerase III su 26.7 42 0.00091 37.4 2.3 27 460-486 29-56 (367)
357 COG1136 SalX ABC-type antimicr 26.6 21 0.00046 37.6 -0.1 15 472-486 34-48 (226)
358 PRK10078 ribose 1,5-bisphospho 26.4 23 0.0005 35.5 0.2 16 471-486 4-19 (186)
359 PRK05342 clpX ATP-dependent pr 26.4 49 0.0011 38.0 2.8 18 469-486 108-125 (412)
360 PF00025 Arf: ADP-ribosylation 26.4 37 0.00079 33.6 1.6 28 459-486 3-31 (175)
361 PRK14530 adenylate kinase; Pro 26.4 27 0.00058 35.9 0.6 16 471-486 5-20 (215)
362 PRK11637 AmiB activator; Provi 26.3 4.7E+02 0.01 29.9 10.8 14 596-609 405-418 (428)
363 PRK00300 gmk guanylate kinase; 26.3 24 0.00052 35.6 0.3 18 469-486 5-22 (205)
364 TIGR03877 thermo_KaiC_1 KaiC d 26.2 49 0.0011 34.6 2.6 25 460-484 9-36 (237)
365 PRK03839 putative kinase; Prov 26.1 27 0.00059 34.6 0.6 14 472-485 3-16 (180)
366 TIGR00643 recG ATP-dependent D 26.1 46 0.00099 40.2 2.6 40 445-487 235-274 (630)
367 COG3854 SpoIIIAA ncharacterize 26.1 45 0.00098 35.6 2.2 36 451-486 119-154 (308)
368 PF10412 TrwB_AAD_bind: Type I 26.0 20 0.00044 40.5 -0.3 16 471-486 17-32 (386)
369 PRK10820 DNA-binding transcrip 26.0 30 0.00064 40.9 1.0 46 436-486 199-244 (520)
370 TIGR00231 small_GTP small GTP- 25.9 22 0.00048 32.6 -0.1 15 472-486 4-18 (161)
371 PRK09270 nucleoside triphospha 25.8 54 0.0012 34.1 2.8 20 467-486 31-50 (229)
372 PF06785 UPF0242: Uncharacteri 25.8 4.9E+02 0.011 29.1 9.9 45 315-359 147-191 (401)
373 TIGR01351 adk adenylate kinase 25.7 29 0.00062 35.5 0.7 34 472-509 2-35 (210)
374 PF08477 Miro: Miro-like prote 25.7 30 0.00064 31.2 0.8 15 472-486 2-16 (119)
375 TIGR02236 recomb_radA DNA repa 25.7 51 0.0011 35.9 2.7 28 460-487 83-113 (310)
376 cd03274 ABC_SMC4_euk Eukaryoti 25.6 25 0.00055 36.2 0.3 16 471-486 27-42 (212)
377 COG4096 HsdR Type I site-speci 25.5 68 0.0015 39.7 3.8 36 452-488 167-204 (875)
378 TIGR00959 ffh signal recogniti 25.3 31 0.00068 39.7 1.0 19 468-486 98-116 (428)
379 TIGR03263 guanyl_kin guanylate 25.1 32 0.0007 33.8 0.9 16 471-486 3-18 (180)
380 PRK15429 formate hydrogenlyase 24.7 37 0.0008 41.4 1.5 44 438-486 373-416 (686)
381 PRK14957 DNA polymerase III su 24.7 37 0.0008 40.4 1.5 41 439-486 14-55 (546)
382 COG2433 Uncharacterized conser 24.6 6E+02 0.013 30.7 11.0 23 69-91 57-79 (652)
383 cd03240 ABC_Rad50 The catalyti 24.5 27 0.00058 35.8 0.2 17 471-487 24-40 (204)
384 PF04728 LPP: Lipoprotein leuc 24.4 4.1E+02 0.009 22.0 7.6 28 325-352 5-32 (56)
385 PRK06851 hypothetical protein; 24.4 33 0.00072 38.8 0.9 27 460-486 21-47 (367)
386 COG0552 FtsY Signal recognitio 24.3 72 0.0016 35.6 3.5 20 467-486 137-156 (340)
387 TIGR01613 primase_Cterm phage/ 24.2 41 0.00089 36.6 1.6 30 457-486 61-93 (304)
388 COG0467 RAD55 RecA-superfamily 24.2 49 0.0011 34.9 2.2 25 461-485 12-39 (260)
389 PRK14953 DNA polymerase III su 24.2 47 0.001 38.9 2.2 35 449-486 20-55 (486)
390 PF04156 IncA: IncA protein; 24.0 5.9E+02 0.013 25.4 9.9 17 332-348 132-148 (191)
391 PRK09401 reverse gyrase; Revie 24.0 52 0.0011 42.8 2.7 25 459-485 87-111 (1176)
392 COG1122 CbiO ABC-type cobalt t 24.0 34 0.00073 36.2 0.9 17 470-486 31-47 (235)
393 COG0606 Predicted ATPase with 23.9 32 0.0007 40.0 0.7 26 460-487 191-216 (490)
394 TIGR02768 TraA_Ti Ti-type conj 23.7 42 0.0009 41.5 1.7 29 459-488 359-387 (744)
395 PRK13729 conjugal transfer pil 23.7 2.1E+02 0.0046 33.4 7.2 26 322-347 68-93 (475)
396 PRK00279 adk adenylate kinase; 23.7 33 0.00072 35.2 0.7 15 471-485 2-16 (215)
397 KOG0995 Centromere-associated 23.7 1.2E+03 0.025 28.1 13.1 46 41-92 70-120 (581)
398 KOG0328 Predicted ATP-dependen 23.6 62 0.0013 35.4 2.7 28 458-487 55-82 (400)
399 PLN02200 adenylate kinase fami 23.5 36 0.00078 35.8 1.0 37 469-509 43-79 (234)
400 PF04548 AIG1: AIG1 family; I 23.4 29 0.00064 35.6 0.3 16 471-486 2-17 (212)
401 TIGR01970 DEAH_box_HrpB ATP-de 23.4 49 0.0011 41.4 2.2 27 458-486 8-34 (819)
402 KOG0741 AAA+-type ATPase [Post 23.4 40 0.00087 39.7 1.4 15 471-485 258-272 (744)
403 COG3842 PotA ABC-type spermidi 23.4 27 0.00059 39.2 -0.0 13 474-486 36-48 (352)
404 PHA02774 E1; Provisional 23.3 52 0.0011 39.4 2.3 27 461-487 424-452 (613)
405 PRK14956 DNA polymerase III su 23.2 48 0.001 38.8 2.0 34 450-486 23-57 (484)
406 PRK10865 protein disaggregatio 23.2 29 0.00063 43.5 0.2 32 457-488 187-218 (857)
407 TIGR01243 CDC48 AAA family ATP 23.1 65 0.0014 39.7 3.2 17 470-486 213-229 (733)
408 PRK06305 DNA polymerase III su 23.0 45 0.00097 38.7 1.7 41 439-486 15-56 (451)
409 PRK05563 DNA polymerase III su 22.9 55 0.0012 39.0 2.5 35 449-486 20-55 (559)
410 cd02027 APSK Adenosine 5'-phos 22.8 32 0.0007 33.3 0.4 15 472-486 2-16 (149)
411 KOG0745 Putative ATP-dependent 22.8 38 0.00083 39.0 1.0 14 472-485 229-242 (564)
412 PHA02530 pseT polynucleotide k 22.8 37 0.00079 36.5 0.9 16 470-485 3-18 (300)
413 TIGR00929 VirB4_CagE type IV s 22.7 29 0.00064 42.7 0.1 18 469-486 434-451 (785)
414 KOG0348 ATP-dependent RNA heli 22.7 50 0.0011 38.9 1.9 25 459-485 166-190 (708)
415 TIGR03878 thermo_KaiC_2 KaiC d 22.6 57 0.0012 34.7 2.3 16 469-484 36-51 (259)
416 PF14532 Sigma54_activ_2: Sigm 22.6 34 0.00073 32.5 0.5 20 467-486 19-38 (138)
417 TIGR01074 rep ATP-dependent DN 22.5 34 0.00074 41.4 0.6 20 469-488 14-33 (664)
418 cd03279 ABC_sbcCD SbcCD and ot 22.5 32 0.0007 35.2 0.4 18 470-487 29-46 (213)
419 COG4026 Uncharacterized protei 22.4 3.7E+02 0.008 28.4 7.8 21 322-342 141-161 (290)
420 TIGR02639 ClpA ATP-dependent C 22.3 38 0.00082 41.7 1.0 32 457-488 191-222 (731)
421 PRK06645 DNA polymerase III su 22.3 50 0.0011 39.0 1.9 23 464-486 37-60 (507)
422 PRK04301 radA DNA repair and r 22.2 68 0.0015 35.1 2.9 27 460-486 90-119 (317)
423 TIGR01054 rgy reverse gyrase. 22.2 54 0.0012 42.7 2.3 25 459-485 85-109 (1171)
424 COG0513 SrmB Superfamily II DN 22.2 56 0.0012 38.5 2.3 27 458-486 57-83 (513)
425 PF13851 GAS: Growth-arrest sp 22.2 8.2E+02 0.018 25.2 10.6 16 372-387 114-129 (201)
426 TIGR01447 recD exodeoxyribonuc 22.2 43 0.00093 40.2 1.3 26 460-487 153-178 (586)
427 COG0563 Adk Adenylate kinase a 22.1 39 0.00085 34.1 0.9 14 472-485 3-16 (178)
428 TIGR00235 udk uridine kinase. 22.0 39 0.00084 34.4 0.8 17 470-486 7-23 (207)
429 cd02019 NK Nucleoside/nucleoti 22.0 38 0.00083 28.3 0.7 15 472-486 2-16 (69)
430 PRK10884 SH3 domain-containing 21.9 7.7E+02 0.017 25.7 10.3 24 324-347 94-117 (206)
431 COG3839 MalK ABC-type sugar tr 21.9 32 0.0007 38.4 0.2 15 472-486 32-46 (338)
432 cd00227 CPT Chloramphenicol (C 21.9 40 0.00086 33.3 0.9 16 471-486 4-19 (175)
433 CHL00095 clpC Clp protease ATP 21.9 67 0.0015 40.2 3.0 38 449-486 513-556 (821)
434 PRK12727 flagellar biosynthesi 21.8 32 0.0007 40.8 0.2 73 675-748 473-547 (559)
435 PF12004 DUF3498: Domain of un 21.8 30 0.00066 40.5 0.0 20 250-269 387-406 (495)
436 PRK14952 DNA polymerase III su 21.8 52 0.0011 39.5 1.9 41 439-486 11-52 (584)
437 TIGR03117 cas_csf4 CRISPR-asso 21.8 61 0.0013 39.3 2.5 32 450-486 2-33 (636)
438 cd03115 SRP The signal recogni 21.8 33 0.00072 33.6 0.3 16 472-487 3-18 (173)
439 PRK02496 adk adenylate kinase; 21.7 39 0.00084 33.6 0.7 15 472-486 4-18 (184)
440 PRK11131 ATP-dependent RNA hel 21.6 65 0.0014 42.2 2.8 21 465-486 86-106 (1294)
441 PRK15424 propionate catabolism 21.6 60 0.0013 38.6 2.4 44 438-486 216-259 (538)
442 PF02367 UPF0079: Uncharacteri 21.6 42 0.00091 32.0 0.9 27 461-488 8-34 (123)
443 TIGR01967 DEAH_box_HrpA ATP-de 21.6 69 0.0015 41.9 3.1 21 465-486 79-99 (1283)
444 KOG0340 ATP-dependent RNA heli 21.4 45 0.00097 37.5 1.2 30 458-489 35-64 (442)
445 PRK12337 2-phosphoglycerate ki 21.4 75 0.0016 37.1 3.0 22 467-488 253-274 (475)
446 PRK04296 thymidine kinase; Pro 21.3 25 0.00055 35.6 -0.7 18 471-488 4-21 (190)
447 PRK11608 pspF phage shock prot 21.3 50 0.0011 36.4 1.6 32 454-486 15-46 (326)
448 TIGR03346 chaperone_ClpB ATP-d 21.3 35 0.00075 42.8 0.4 32 457-488 182-213 (852)
449 PTZ00301 uridine kinase; Provi 21.2 29 0.00064 35.9 -0.2 15 472-486 6-20 (210)
450 PRK14528 adenylate kinase; Pro 21.2 40 0.00087 33.9 0.7 15 472-486 4-18 (186)
451 PF08781 DP: Transcription fac 21.2 2.9E+02 0.0064 27.1 6.6 32 356-387 16-47 (142)
452 COG0324 MiaA tRNA delta(2)-iso 21.1 46 0.001 36.7 1.2 16 471-486 5-20 (308)
453 PF01745 IPT: Isopentenyl tran 21.1 40 0.00087 35.5 0.7 15 472-486 4-18 (233)
454 PRK01184 hypothetical protein; 21.0 42 0.00092 33.2 0.9 15 471-485 3-17 (184)
455 COG1162 Predicted GTPases [Gen 21.0 86 0.0019 34.5 3.2 25 460-486 157-181 (301)
456 PF01926 MMR_HSR1: 50S ribosom 21.0 29 0.00064 31.5 -0.3 15 472-486 2-16 (116)
457 cd00071 GMPK Guanosine monopho 20.9 43 0.00094 32.0 0.9 15 472-486 2-16 (137)
458 TIGR00554 panK_bact pantothena 20.9 55 0.0012 35.8 1.8 18 469-486 62-79 (290)
459 PRK05057 aroK shikimate kinase 20.8 44 0.00096 33.2 1.0 18 469-486 4-21 (172)
460 KOG0344 ATP-dependent RNA heli 20.7 58 0.0013 38.6 1.9 27 459-487 165-191 (593)
461 TIGR02655 circ_KaiC circadian 20.7 61 0.0013 37.9 2.2 63 649-711 275-346 (484)
462 TIGR02329 propionate_PrpR prop 20.6 61 0.0013 38.4 2.2 45 437-486 208-252 (526)
463 KOG0735 AAA+-type ATPase [Post 20.6 42 0.00091 40.9 0.8 49 468-516 700-761 (952)
464 PRK06851 hypothetical protein; 20.5 50 0.0011 37.3 1.4 27 460-486 205-231 (367)
465 cd00983 recA RecA is a bacter 20.5 77 0.0017 35.3 2.8 29 458-486 40-72 (325)
466 TIGR01069 mutS2 MutS2 family p 20.4 5.1E+02 0.011 32.4 10.1 23 140-162 260-282 (771)
467 TIGR03574 selen_PSTK L-seryl-t 20.3 41 0.00088 35.3 0.6 15 472-486 2-16 (249)
468 TIGR01587 cas3_core CRISPR-ass 20.3 46 0.00099 36.7 1.0 15 472-486 2-16 (358)
469 TIGR03880 KaiC_arch_3 KaiC dom 20.2 72 0.0016 32.8 2.4 26 461-486 5-33 (224)
470 TIGR00382 clpX endopeptidase C 20.2 77 0.0017 36.4 2.8 17 470-486 117-133 (413)
471 cd03272 ABC_SMC3_euk Eukaryoti 20.1 38 0.00082 35.2 0.3 17 471-487 25-41 (243)
472 PRK09302 circadian clock prote 20.1 68 0.0015 37.6 2.5 28 459-486 18-48 (509)
473 TIGR00390 hslU ATP-dependent p 20.1 43 0.00094 38.6 0.8 16 471-486 49-64 (441)
474 TIGR02238 recomb_DMC1 meiotic 20.1 89 0.0019 34.5 3.2 27 460-486 84-113 (313)
475 PF12774 AAA_6: Hydrolytic ATP 20.1 34 0.00074 36.1 -0.0 45 470-514 33-84 (231)
476 KOG1029 Endocytic adaptor prot 20.1 3.3E+02 0.0071 33.7 7.8 25 621-645 958-982 (1118)
477 PF07334 IFP_35_N: Interferon- 20.0 1.8E+02 0.0038 25.6 4.3 30 325-354 2-31 (76)
478 PF08298 AAA_PrkA: PrkA AAA do 20.0 1.3E+02 0.0028 33.9 4.4 49 460-509 76-142 (358)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=9.5e-95 Score=838.77 Aligned_cols=424 Identities=47% Similarity=0.719 Sum_probs=396.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHH---HHHhhhhhhhhccCCCEEEE
Q 004272 322 KMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVL---EENRKLYNQVQDLKGSIRVY 398 (764)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~e~r~l~n~~~~lkg~IrV~ 398 (764)
+..++.++.++++|+..+..++..+..++..+++.+......+..++.....|+... .+||+|||+++|||||||||
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEE
Confidence 334889999999999999999999999999999999999888999999998888877 89999999999999999999
Q ss_pred EEeCCCCCCCCCC-CcceeeecC-CeEEEeCCCCCCC-CceEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEee
Q 004272 399 CRVRPFLSGQSNY-LSTVDHIEE-GNITINTPSKHGK-GWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAY 475 (764)
Q Consensus 399 ~RVRP~~~~e~~~-~~~i~~~~~-~~i~i~~p~~~g~-~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaY 475 (764)
|||||+++++... ...+...++ +.+.+..|....+ ..+.|.||+||+|.++|++||.+++|+|+++|||||||||||
T Consensus 320 CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAY 399 (670)
T KOG0239|consen 320 CRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAY 399 (670)
T ss_pred EEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEe
Confidence 9999999988763 344555544 5688888877665 344699999999999999999999999999999999999999
Q ss_pred ccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCceeEeecCCC
Q 004272 476 GQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQT 555 (764)
Q Consensus 476 GqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ir~~~~~ 555 (764)
|||||||||||.|| +++++|||||++++||..+.....+|.|.+.++|+|||||.|+|||.++.....+.|++++.+
T Consensus 400 GQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~ 476 (670)
T KOG0239|consen 400 GQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEG 476 (670)
T ss_pred cccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCC
Confidence 99999999999997 467899999999999999999888999999999999999999999977655678999999999
Q ss_pred CccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecCCCcCcccc
Q 004272 556 GLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKS 635 (764)
Q Consensus 556 g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLAGSEr~~~s 635 (764)
+.+|++++.++|.+.+++..+++.|.+||++++|.+|++|||||+||+|+|.+.+..++....|+|+|||||||||++++
T Consensus 477 ~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s 556 (670)
T KOG0239|consen 477 NLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKS 556 (670)
T ss_pred ceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHH
Q 004272 636 EVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAER 715 (764)
Q Consensus 636 ~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r 715 (764)
+++|+|++|+++||+||++||+||.||++++.||||||||||+|||++|||++||+|||+|||...++.||+++|+||+|
T Consensus 557 ~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~r 636 (670)
T KOG0239|consen 557 GVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATR 636 (670)
T ss_pred CCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcccccCCchHHHHHHHHHHHHHHHhh
Q 004272 716 VATVELGAARVNKDSSDVKELKEQVLTLSVTVI 748 (764)
Q Consensus 716 ~~~v~~g~~~~n~~~~~v~~L~~ei~~Lk~~l~ 748 (764)
|+.|++|+++.+.++.+...++.....++...+
T Consensus 637 v~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~~ 669 (670)
T KOG0239|consen 637 VRSVELGSARKQVSTSDDVSLKRFGQLEKLSTA 669 (670)
T ss_pred hhceecccccccccccchhhhhhhhhhhhhhhc
Confidence 999999999999999999899888888776543
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-85 Score=739.90 Aligned_cols=355 Identities=42% Similarity=0.651 Sum_probs=316.5
Q ss_pred CCCEEEEEEeCCCCCCCCCC--Cccee-eecCCeEEEeCCCCC-CCCceEEEcceecCCCCChHhHHhhh-HHHHHHHHC
Q 004272 392 KGSIRVYCRVRPFLSGQSNY--LSTVD-HIEEGNITINTPSKH-GKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLD 466 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~~--~~~i~-~~~~~~i~i~~p~~~-g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~ 466 (764)
..+|+|++|+||+...+... ...+. ....+.+.+.+|... ....+.|+||.||+++++|++||..+ .|+|++|++
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 35799999999998755432 11221 223455666665432 22567899999999999999999985 999999999
Q ss_pred CCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCc
Q 004272 467 GYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRR 546 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~ 546 (764)
|||+||||||||||||||||.|++ ....|||||++.+||.+++.+++...|.|+|||+|||||.|+|||.+... +.
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~---~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~ 159 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPD---PELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KG 159 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCC---hhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CC
Confidence 999999999999999999999983 67889999999999999999887779999999999999999999987643 78
Q ss_pred eeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeec-C--CCceEEEEEEE
Q 004272 547 LEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDL-T--SGTMYRGCMHL 623 (764)
Q Consensus 547 l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~-~--~~~~~~s~L~l 623 (764)
+.+++++..|+||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||||+|+.... . ......|+|+|
T Consensus 160 l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnl 239 (574)
T KOG4280|consen 160 LELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNL 239 (574)
T ss_pred ceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999998322 2 22457899999
Q ss_pred EecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCC-CCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCC
Q 004272 624 VDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP-HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDA 702 (764)
Q Consensus 624 VDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~-hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~ 702 (764)
||||||||..+++++|+|++|+.+||+||++||+||.||++.+. ||||||||||+||||||||||||+||+||+|+..+
T Consensus 240 vDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~ 319 (574)
T KOG4280|consen 240 VDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDN 319 (574)
T ss_pred eeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhh
Confidence 99999999999999999999999999999999999999998776 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCcccccCCc--hHHHHHHHHHHHHHHHhhhhh
Q 004272 703 VGETISTLKFAERVATVELGAARVNKDS--SDVKELKEQVLTLSVTVISIE 751 (764)
Q Consensus 703 ~~ETlsTL~FA~r~~~v~~g~~~~n~~~--~~v~~L~~ei~~Lk~~l~~~~ 751 (764)
++||++||+||+|++.|++. +.+|.++ +.+++|+++|+.||..|...+
T Consensus 320 ~~ETlsTLrfA~Rak~I~nk-~~ined~~~~~~~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 320 YEETLSTLRFAQRAKAIKNK-PVINEDPKDALLRELQEEIERLKKELDPGG 369 (574)
T ss_pred hHHHHHHHHHHHHHHHhhcc-ccccCCcchhhHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999874 6788875 569999999999999998764
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4e-85 Score=748.26 Aligned_cols=359 Identities=39% Similarity=0.594 Sum_probs=325.7
Q ss_pred CCEEEEEEeCCCCCCCCC-CCcceeeecCCeEEEeCCCCCCCCceEEEcceecCC-------CCChHhHHhhh-HHHHHH
Q 004272 393 GSIRVYCRVRPFLSGQSN-YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGP-------SATQAEVFSDM-QPLIRS 463 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~-~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~-------~atQ~eVf~~v-~plV~s 463 (764)
.+|+|.+|||||...|.. ...+|..+.+++++|.+|... +....|+||+.|+. .++|..||+++ .++++.
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~-k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS-KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc-ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 479999999999998865 456788898999999887543 34456999999975 47899999997 999999
Q ss_pred HHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh-ccceEEEEEEEEEEEeCCeeeeccCCCC
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-KDIFRYDVAVQMLEIYNEQVRDLLVTDG 542 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~-~~~~~~~V~vS~~EIYnE~V~DLL~~~~ 542 (764)
++.|||+||||||||||||||||+|-. .++++|||||++++||..+... .+...|.|.|||+|||||+|+|||+...
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~--~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~ 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQ--EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccC--CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence 999999999999999999999999965 3578999999999999988654 4568999999999999999999998556
Q ss_pred CCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCC--C--ceEE
Q 004272 543 SNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTS--G--TMYR 618 (764)
Q Consensus 543 ~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~--~--~~~~ 618 (764)
....|.+|+++..|+||.+|+.+.|+|+.|+..+|+.|++.|++++|+||+.|||||+||+|.+.+..... + ...+
T Consensus 161 ~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~ 240 (1221)
T KOG0245|consen 161 SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKV 240 (1221)
T ss_pred CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceee
Confidence 67899999999999999999999999999999999999999999999999999999999999998876543 2 5688
Q ss_pred EEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc-------CCCCCCCCChhhHHhhhccCCCccEE
Q 004272 619 GCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-------NPHVPYRNSKLTQLLQDSLGGQAKTL 691 (764)
Q Consensus 619 s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k-------~~hiPYR~SKLT~LLqdsLgGnskt~ 691 (764)
|+|+|||||||||.+.++++|+||||+.+|||||.+||+||+||++. +.+||||||.|||||+++|||||||+
T Consensus 241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa 320 (1221)
T KOG0245|consen 241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA 320 (1221)
T ss_pred eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence 99999999999999999999999999999999999999999999852 34899999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhcccccCcccccCCc--hHHHHHHHHHHHHHHHhhhhhccch
Q 004272 692 MFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDS--SDVKELKEQVLTLSVTVISIEFCNF 755 (764)
Q Consensus 692 mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~~--~~v~~L~~ei~~Lk~~l~~~~~~~~ 755 (764)
||++|||++-||+|||+|||||.|++.|.++ +++|+|+ ..|++|++||.+||+.|+.......
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~-avVNEdpnaKLIRELreEv~rLksll~~~~~~~~ 385 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNN-AVVNEDPNAKLIRELREEVARLKSLLRAQGLGDI 385 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhcc-ceeCCCccHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999875 6789886 4699999999999999988765544
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.7e-83 Score=742.85 Aligned_cols=359 Identities=37% Similarity=0.579 Sum_probs=314.0
Q ss_pred cCCCEEEEEEeCCCCCCCCCCCc-ceeeecC--CeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHC
Q 004272 391 LKGSIRVYCRVRPFLSGQSNYLS-TVDHIEE--GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLD 466 (764)
Q Consensus 391 lkg~IrV~~RVRP~~~~e~~~~~-~i~~~~~--~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~ 466 (764)
---||+|++||||+...|....+ .+...++ ..|.|......+.-.+.|+||+||+|.+.|++||+. |.|+|..|+.
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 34699999999999988865433 3333433 346665541111257899999999999999999998 7999999999
Q ss_pred CCCeEEEeeccCCCCCceEecCCC----CCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCC
Q 004272 467 GYNVCIFAYGQTGSGKTYTMTGPR----ELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG 542 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm~G~~----~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~ 542 (764)
|||||||||||||+||||||+|.. +..+...||||||+.+||+.++... ..|.|+|||+|+|||.++|||+++.
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCcc
Confidence 999999999999999999999942 2245678999999999999998655 5899999999999999999999876
Q ss_pred CC-CceeEeecC-----CCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCC--
Q 004272 543 SN-RRLEIRNSS-----QTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG-- 614 (764)
Q Consensus 543 ~~-~~l~ir~~~-----~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~-- 614 (764)
.. +.+.+..++ .+|+.|.|+.+++|+++.|++.+|.+|...|.+++|.||.+|||||+||+|.|.-+..+.+
T Consensus 205 ~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ge 284 (1041)
T KOG0243|consen 205 TSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGE 284 (1041)
T ss_pred ccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcch
Confidence 65 667776655 5799999999999999999999999999999999999999999999999999976654332
Q ss_pred -ceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEE
Q 004272 615 -TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMF 693 (764)
Q Consensus 615 -~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI 693 (764)
-+..|+|+||||||||..+++|+.+.|.+|+..||+||.+||+||.||.++..|||||+|||||||||||||..||+||
T Consensus 285 elvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iI 364 (1041)
T KOG0243|consen 285 ELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCII 364 (1041)
T ss_pred hhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEE
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccCcccccCC--chHHHHHHHHHHHHHHHhhhhh
Q 004272 694 VHISPEPDAVGETISTLKFAERVATVELGAARVNKD--SSDVKELKEQVLTLSVTVISIE 751 (764)
Q Consensus 694 ~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~--~~~v~~L~~ei~~Lk~~l~~~~ 751 (764)
+||||+..+++||++||.||.||+.|+++|-...+- ..-+++|-.||.+||.+|+...
T Consensus 365 ATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 365 ATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred EEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999876544343 3458999999999999996543
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5.3e-80 Score=725.09 Aligned_cols=347 Identities=39% Similarity=0.619 Sum_probs=302.3
Q ss_pred CCCEEEEEEeCCCCCCCCCCCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhh-HHHHHHHHCCCCe
Q 004272 392 KGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYNV 470 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~G~N~ 470 (764)
.++|+|||||||+.+.+.. ...+..+.++.+.+. .+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 97 ds~VkV~VRVRPl~~~E~g-~~iV~~~s~dsl~I~--------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNa 167 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEG-EMIVQKMSNDSLTIN--------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNS 167 (1320)
T ss_pred CCCeEEEEEcCCCCCccCC-CeeEEEcCCCeEEEe--------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 5799999999999887643 334455566666663 36899999999999999999995 8999999999999
Q ss_pred EEEeeccCCCCCceEecCCCCC------CcccccchHHHHHHHHHHHhhh-----ccceEEEEEEEEEEEeCCeeeeccC
Q 004272 471 CIFAYGQTGSGKTYTMTGPREL------TEKSQGVNYRALSDLFLIAEQR-----KDIFRYDVAVQMLEIYNEQVRDLLV 539 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G~~~~------~~~~~GIi~ral~~LF~~~~~~-----~~~~~~~V~vS~~EIYnE~V~DLL~ 539 (764)
||||||||||||||||+|+... ...++||+||++++||..+... ...+.|.|+|||+|||||+|+|||.
T Consensus 168 TIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLs 247 (1320)
T PLN03188 168 SVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLD 247 (1320)
T ss_pred eeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccc
Confidence 9999999999999999997531 3467899999999999987643 2346899999999999999999997
Q ss_pred CCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC--C--Cc
Q 004272 540 TDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT--S--GT 615 (764)
Q Consensus 540 ~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~--~--~~ 615 (764)
+. .+.+.|++++.+|++|.|++++.|.|.+|+.++|..|.++|++++|.+|..|||||+||+|+|...... . ..
T Consensus 248 p~--~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss 325 (1320)
T PLN03188 248 PS--QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSS 325 (1320)
T ss_pred cc--cCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcc
Confidence 64 457999999999999999999999999999999999999999999999999999999999999865432 2 23
Q ss_pred eEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc-----cCCCCCCCCChhhHHhhhccCCCccE
Q 004272 616 MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ-----KNPHVPYRNSKLTQLLQDSLGGQAKT 690 (764)
Q Consensus 616 ~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~-----k~~hiPYR~SKLT~LLqdsLgGnskt 690 (764)
...|+|+|||||||||...+++.|.+++|+.+||+||++||+||.+|+. +..|||||+||||+||||+|||||+|
T Consensus 326 ~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKT 405 (1320)
T PLN03188 326 FKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKL 405 (1320)
T ss_pred eEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceE
Confidence 5689999999999999999999999999999999999999999999985 45799999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhcccccCcccccCC-ch-------HHHHHHHHHHHHHHHhhhh
Q 004272 691 LMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKD-SS-------DVKELKEQVLTLSVTVISI 750 (764)
Q Consensus 691 ~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~-~~-------~v~~L~~ei~~Lk~~l~~~ 750 (764)
+|||||||...+++||++||+||+|++.|++.+ .+|.. .. .|++|++|+..||.....+
T Consensus 406 vMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkp-vvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p 472 (1320)
T PLN03188 406 AMVCAISPSQSCKSETFSTLRFAQRAKAIKNKA-VVNEVMQDDVNFLREVIRQLRDELQRVKANGNNP 472 (1320)
T ss_pred EEEEecCCchhhHHHHHHHHHHHHHHhhcCccc-eeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999865 45544 22 4566666777777665443
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.4e-79 Score=671.14 Aligned_cols=319 Identities=40% Similarity=0.644 Sum_probs=290.5
Q ss_pred CEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCC----------CCCceEEEcceecCCCCChHhHHhhh-HHH
Q 004272 394 SIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKH----------GKGWKSFSFNKVYGPSATQAEVFSDM-QPL 460 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~----------g~~~~~F~FD~VF~~~atQ~eVf~~v-~pl 460 (764)
+|+|||||||+.+.|.. ...++...++ .+.+..|... ....+.|.||+||+++++|++||+.+ .|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCC-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHH
Confidence 69999999999987643 2333444444 4445455432 22468999999999999999999995 899
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCC
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVT 540 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~ 540 (764)
|+++++|||+||||||||||||||||+|++ .++||+||++++||..++...+.+.|.|++||+|||||+|+|||++
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~ 155 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD----SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSP 155 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC----CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCC
Confidence 999999999999999999999999999964 5789999999999999988877889999999999999999999976
Q ss_pred CCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC---CCceE
Q 004272 541 DGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SGTMY 617 (764)
Q Consensus 541 ~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~---~~~~~ 617 (764)
+ .+.+.+++++.++++|.|+++++|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|.+.+.. .....
T Consensus 156 ~--~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~ 233 (338)
T cd01370 156 S--SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVR 233 (338)
T ss_pred C--CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEE
Confidence 5 567999999999999999999999999999999999999999999999999999999999999988765 45678
Q ss_pred EEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC---CCCCCCCChhhHHhhhccCCCccEEEEE
Q 004272 618 RGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN---PHVPYRNSKLTQLLQDSLGGQAKTLMFV 694 (764)
Q Consensus 618 ~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~---~hiPYR~SKLT~LLqdsLgGnskt~mI~ 694 (764)
.|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|++++ .|||||+||||+||||+|||||+|+||+
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~ 313 (338)
T cd01370 234 IGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIA 313 (338)
T ss_pred EEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEE
Confidence 8999999999999999999999999999999999999999999999887 8999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhccc
Q 004272 695 HISPEPDAVGETISTLKFAERVATV 719 (764)
Q Consensus 695 ~ISP~~~~~~ETlsTL~FA~r~~~v 719 (764)
||||+..+++||++||+||+|+++|
T Consensus 314 ~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 314 NISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999876
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=2.5e-78 Score=660.94 Aligned_cols=320 Identities=41% Similarity=0.622 Sum_probs=284.5
Q ss_pred CCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhh-HHHHHHHHCCCC
Q 004272 393 GSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYN 469 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~G~N 469 (764)
.+|||||||||+.+.|.. ...++...+++.+.+... +.+.|.||+||+++++|++||+.+ .|+|+++++|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n 75 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-----PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN 75 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-----CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 479999999999887753 223444444455554321 257899999999999999999995 999999999999
Q ss_pred eEEEeeccCCCCCceEecCCCCC----CcccccchHHHHHHHHHHHhhh----ccceEEEEEEEEEEEeCCeeeeccCCC
Q 004272 470 VCIFAYGQTGSGKTYTMTGPREL----TEKSQGVNYRALSDLFLIAEQR----KDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~G~~~~----~~~~~GIi~ral~~LF~~~~~~----~~~~~~~V~vS~~EIYnE~V~DLL~~~ 541 (764)
+||||||||||||||||+|+... ...++||+||++++||..+... .....|.|++||+|||||+|+|||.+.
T Consensus 76 ~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~ 155 (337)
T cd01373 76 GSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT 155 (337)
T ss_pred eeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC
Confidence 99999999999999999997642 2357899999999999987543 245689999999999999999999764
Q ss_pred CCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCC--ceEEE
Q 004272 542 GSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG--TMYRG 619 (764)
Q Consensus 542 ~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~--~~~~s 619 (764)
...+.+++++.++++|+|++++.|.|++|++++|..|.++|.+++|.+|.+|||||+||+|+|...+...+ ....|
T Consensus 156 --~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s 233 (337)
T cd01373 156 --SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTS 233 (337)
T ss_pred --CCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEE
Confidence 35699999999999999999999999999999999999999999999999999999999999987764433 45679
Q ss_pred EEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc----cCCCCCCCCChhhHHhhhccCCCccEEEEEe
Q 004272 620 CMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ----KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVH 695 (764)
Q Consensus 620 ~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~----k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ 695 (764)
+|+|||||||||...++++|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+|||||+|+||+|
T Consensus 234 ~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~ 313 (337)
T cd01373 234 RLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIAN 313 (337)
T ss_pred EEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999985 4689999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccc
Q 004272 696 ISPEPDAVGETISTLKFAERVATV 719 (764)
Q Consensus 696 ISP~~~~~~ETlsTL~FA~r~~~v 719 (764)
|||+..+++||++||+||+|++.|
T Consensus 314 vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 314 VSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999876
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-78 Score=666.23 Aligned_cols=330 Identities=40% Similarity=0.629 Sum_probs=299.6
Q ss_pred CCCEEEEEEeCCCCCCCCCCCc-ceeeec--CCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCC
Q 004272 392 KGSIRVYCRVRPFLSGQSNYLS-TVDHIE--EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~~~~-~i~~~~--~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G 467 (764)
-++|+|+||+||....|....+ .++... +.++.+.. ++..+.|.||+||.|+++|++||+. +.|+|++||.|
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~----~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLET----TKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEec----ccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcc
Confidence 5899999999999876644222 233332 34555533 2334889999999999999999998 69999999999
Q ss_pred CCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCce
Q 004272 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l 547 (764)
||+||||||||||||||||.|... ++...||+||++++||..+........|+|+|||+|||+|+++|||++. +.++
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~--k~nl 158 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE--KTNL 158 (607)
T ss_pred cceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc--cCCc
Confidence 999999999999999999999765 4566799999999999999998888899999999999999999999754 5779
Q ss_pred eEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecC
Q 004272 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627 (764)
Q Consensus 548 ~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLA 627 (764)
.+.+|...+++|+|+++..|.+++++++.++.|..+|.++.|.||.+|||||+||+|+|.+.+..+.....|+|+|||||
T Consensus 159 svheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLa 238 (607)
T KOG0240|consen 159 SVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLA 238 (607)
T ss_pred eeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc-CCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHH
Q 004272 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (764)
Q Consensus 628 GSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k-~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ET 706 (764)
|||+++++++.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||+|||+|||||+|.+|+|++|+.-+-.||
T Consensus 239 GSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET 318 (607)
T KOG0240|consen 239 GSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAET 318 (607)
T ss_pred cccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccc
Confidence 99999999999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCcccccCC
Q 004272 707 ISTLKFAERVATVELGAARVNKD 729 (764)
Q Consensus 707 lsTL~FA~r~~~v~~g~~~~n~~ 729 (764)
.+||+|+.|++.|++ .+.+|.+
T Consensus 319 ~STl~fg~rak~ikN-~v~~n~e 340 (607)
T KOG0240|consen 319 KSTLRFGNRAKTIKN-TVWVNLE 340 (607)
T ss_pred ccchhhccccccccc-hhhhhhH
Confidence 999999999999985 4545543
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.1e-77 Score=654.14 Aligned_cols=314 Identities=39% Similarity=0.592 Sum_probs=286.8
Q ss_pred CEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCC---------CCCceEEEcceecCCCCChHhHHhhh-HHHH
Q 004272 394 SIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKH---------GKGWKSFSFNKVYGPSATQAEVFSDM-QPLI 461 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~---------g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV 461 (764)
+|+|||||||+.+.|.. ...++...+++++.+..|... +...+.|.||+||+++++|++||+.+ .|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 79999999999887643 345566677888888877541 22568999999999999999999984 9999
Q ss_pred HHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCC
Q 004272 462 RSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (764)
Q Consensus 462 ~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~ 541 (764)
+++++|||+||||||||||||||||+|++ .++||+||++++||..+.. |.|.+||+|||||+|+|||++.
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~----~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~ 151 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSP----GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDS 151 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCc
Confidence 99999999999999999999999999954 6889999999999998765 9999999999999999999875
Q ss_pred CC----CCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCC----
Q 004272 542 GS----NRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTS---- 613 (764)
Q Consensus 542 ~~----~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~---- 613 (764)
.. .+++.+++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|.+|||||+||+|+|.+.+...
T Consensus 152 ~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~ 231 (345)
T cd01368 152 PSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDV 231 (345)
T ss_pred cccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccc
Confidence 43 3579999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred ----CceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc------cCCCCCCCCChhhHHhhhc
Q 004272 614 ----GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ------KNPHVPYRNSKLTQLLQDS 683 (764)
Q Consensus 614 ----~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~------k~~hiPYR~SKLT~LLqds 683 (764)
+....|+|+|||||||||..+++++|++++|+.+||+||++|++||.+|++ +..|||||+||||+||||+
T Consensus 232 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~ 311 (345)
T cd01368 232 DQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNY 311 (345)
T ss_pred ccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999986 5789999999999999999
Q ss_pred cCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhc
Q 004272 684 LGGQAKTLMFVHISPEPDAVGETISTLKFAERVA 717 (764)
Q Consensus 684 LgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~ 717 (764)
|||||+|+||+||||+..+++||++||+||++++
T Consensus 312 l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 312 FDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999974
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.1e-75 Score=644.96 Aligned_cols=327 Identities=42% Similarity=0.645 Sum_probs=297.7
Q ss_pred CCEEEEEEeCCCCCCCCC-CCcceeeecCCeEEEeCCCCC---CCCceEEEcceecCCC-------CChHhHHhhh-HHH
Q 004272 393 GSIRVYCRVRPFLSGQSN-YLSTVDHIEEGNITINTPSKH---GKGWKSFSFNKVYGPS-------ATQAEVFSDM-QPL 460 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~-~~~~i~~~~~~~i~i~~p~~~---g~~~~~F~FD~VF~~~-------atQ~eVf~~v-~pl 460 (764)
++|+|||||||+...|.. ....+..+.+..+++.+|... ....+.|.||+||+++ ++|++||+++ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999887654 334556677789999887641 2256899999999999 9999999984 899
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhcc-ceEEEEEEEEEEEeCCeeeeccC
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKD-IFRYDVAVQMLEIYNEQVRDLLV 539 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~-~~~~~V~vS~~EIYnE~V~DLL~ 539 (764)
|+++++|||+||||||||||||||||+|+. .++||+||++++||..+..... ...|.|++||+|||||+|+|||+
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 999999999999999999999999999954 4789999999999998876654 67899999999999999999998
Q ss_pred CCC-CCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC----CC
Q 004272 540 TDG-SNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT----SG 614 (764)
Q Consensus 540 ~~~-~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~----~~ 614 (764)
+.. ....+.+++++.+|++|+|+++++|+|++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+.. ..
T Consensus 157 ~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~ 236 (356)
T cd01365 157 PKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLT 236 (356)
T ss_pred CCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCC
Confidence 764 4568999999999999999999999999999999999999999999999999999999999999887654 45
Q ss_pred ceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc--------CCCCCCCCChhhHHhhhccCC
Q 004272 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK--------NPHVPYRNSKLTQLLQDSLGG 686 (764)
Q Consensus 615 ~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k--------~~hiPYR~SKLT~LLqdsLgG 686 (764)
....|+|+|||||||||...++.+|++++|+.+||+||++|++||.+|+.. +.|||||+||||+||||+|||
T Consensus 237 ~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg 316 (356)
T cd01365 237 TEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGG 316 (356)
T ss_pred ceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCC
Confidence 678899999999999999999999999999999999999999999999863 589999999999999999999
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCc
Q 004272 687 QAKTLMFVHISPEPDAVGETISTLKFAERVATVELGA 723 (764)
Q Consensus 687 nskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~ 723 (764)
+++|+||+||||...+++||++||+||+|+++|++.+
T Consensus 317 ~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 317 NSKTAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999999999865
No 11
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-77 Score=691.18 Aligned_cols=349 Identities=40% Similarity=0.611 Sum_probs=302.6
Q ss_pred CCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCC--CCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCC
Q 004272 393 GSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSK--HGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~--~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G 467 (764)
.+|.|++||||+.+.+.. ..+.+...++..+....... .......|.||+||+++++|++||+. ++|+|.+++.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 589999999999887322 12223334444444332111 11125789999999999999999998 79999999999
Q ss_pred CCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCce
Q 004272 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l 547 (764)
||++|||||||||||||||.| ++.+|||+|+|+.|||..+.... .+.|.|.|||+|||||.|+|||++++ ..+
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G----~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~--~~L 158 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSG----SEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG--GDL 158 (675)
T ss_pred cccceeeecCCCCCCceEEec----cCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC--CCc
Confidence 999999999999999999999 56789999999999999998776 67999999999999999999997765 349
Q ss_pred eEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecC
Q 004272 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627 (764)
Q Consensus 548 ~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLA 627 (764)
.|++|+.+|++|+|+++.+|.|.++++.+|..|.++|+++.|.+|..|||||+||+|.|......... ..|+|+|||||
T Consensus 159 ~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLA 237 (675)
T KOG0242|consen 159 RLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLA 237 (675)
T ss_pred eEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999887654443 67899999999
Q ss_pred CCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc--CCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHH
Q 004272 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK--NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGE 705 (764)
Q Consensus 628 GSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k--~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~E 705 (764)
||||+.++++.|.|++|+.+||+||.+||+||.+|+++ ..||||||||||||||++||||++|.|||||+|+..+++|
T Consensus 238 GSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~e 317 (675)
T KOG0242|consen 238 GSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEE 317 (675)
T ss_pred hhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHH
Confidence 99999999999999999999999999999999999876 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCcccc--cCCchHHHHHHHHHHHHHHHhhh
Q 004272 706 TISTLKFAERVATVELGAARV--NKDSSDVKELKEQVLTLSVTVIS 749 (764)
Q Consensus 706 TlsTL~FA~r~~~v~~g~~~~--n~~~~~v~~L~~ei~~Lk~~l~~ 749 (764)
|.+||+||+|++.|++.+-.. ..+...++.++.++..|+..+.+
T Consensus 318 T~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 318 TKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred HHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999998754332 22334455566777777777655
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.4e-75 Score=633.97 Aligned_cols=313 Identities=36% Similarity=0.554 Sum_probs=282.7
Q ss_pred CCEEEEEEeCCCCCCCCCC-CcceeeecC-CeEEEeCCCCC--C-C--CceEEEcceecCCCCChHhHHhh-hHHHHHHH
Q 004272 393 GSIRVYCRVRPFLSGQSNY-LSTVDHIEE-GNITINTPSKH--G-K--GWKSFSFNKVYGPSATQAEVFSD-MQPLIRSV 464 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~~-~~~i~~~~~-~~i~i~~p~~~--g-~--~~~~F~FD~VF~~~atQ~eVf~~-v~plV~sv 464 (764)
++|+|||||||+.+.|... ...+..+++ +++++..|... + + ..+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 4899999999999887532 233444433 57888765321 1 1 25789999999999999999998 59999999
Q ss_pred HCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCC
Q 004272 465 LDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSN 544 (764)
Q Consensus 465 l~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~ 544 (764)
++|||+||||||||||||||||+|+. .++||+||++++||..++... ..|.|++||+|||||+|+|||++ .
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~---~ 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDE----NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND---R 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcC----CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC---c
Confidence 99999999999999999999999954 678999999999999987655 57999999999999999999976 4
Q ss_pred CceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEE
Q 004272 545 RRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLV 624 (764)
Q Consensus 545 ~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lV 624 (764)
+.+.+++++.++++|.|+++++|.|++|++++++.|.++|.+++|.+|..|||||+||+|+|.+.+. ....|+|+||
T Consensus 152 ~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~v 228 (322)
T cd01367 152 KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFI 228 (322)
T ss_pred cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEe
Confidence 6799999999999999999999999999999999999999999999999999999999999988764 5678999999
Q ss_pred ecCCCcCccccC-CchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCH
Q 004272 625 DLAGSERVNKSE-VTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAV 703 (764)
Q Consensus 625 DLAGSEr~~~s~-~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~ 703 (764)
|||||||..... ..+++++|+.+||+||++|++||.+|++++.||||||||||+||||+|||||+|+||+||||...++
T Consensus 229 DLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~ 308 (322)
T cd01367 229 DLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSC 308 (322)
T ss_pred ecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhH
Confidence 999999987764 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 004272 704 GETISTLKFAERVA 717 (764)
Q Consensus 704 ~ETlsTL~FA~r~~ 717 (764)
+||++||+||+|++
T Consensus 309 ~eTl~tL~fa~r~k 322 (322)
T cd01367 309 EHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999985
No 13
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=6.1e-75 Score=630.07 Aligned_cols=313 Identities=39% Similarity=0.605 Sum_probs=286.9
Q ss_pred CEEEEEEeCCCCCCCCCCCcceeeecC-----CeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCC
Q 004272 394 SIRVYCRVRPFLSGQSNYLSTVDHIEE-----GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~~~~~i~~~~~-----~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G 467 (764)
||+|||||||+.+.|.+...++...++ ..+.+.+|... ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNR-GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCC-CCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999888665566655544 46777776432 346799999999999999999998 69999999999
Q ss_pred CCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCce
Q 004272 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l 547 (764)
||+||||||||||||||||+|++ .++||+||++++||..++... +.|.|++||+|||||.|+|||.+. ...+
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~----~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--~~~l 151 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDP----NEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA--KKEL 151 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCc----CccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC--CCCc
Confidence 99999999999999999999954 578999999999999876543 689999999999999999999765 4578
Q ss_pred eEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecC
Q 004272 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627 (764)
Q Consensus 548 ~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLA 627 (764)
.|++++.++++|.|+++++|.|++|+.+++..|.++|.+++|.+|..|||||+||+|+|.+.+. .....|+|+|||||
T Consensus 152 ~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLA 229 (319)
T cd01376 152 PIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLA 229 (319)
T ss_pred eEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999988753 34678999999999
Q ss_pred CCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHH
Q 004272 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETI 707 (764)
Q Consensus 628 GSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl 707 (764)
||||...++.+|.+++|+.+||+||++|++||.+|+++..|||||+||||+||+|+|||||+|+||+||||...+++||+
T Consensus 230 GsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (319)
T cd01376 230 GSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTL 309 (319)
T ss_pred CCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 004272 708 STLKFAERVA 717 (764)
Q Consensus 708 sTL~FA~r~~ 717 (764)
+||+||+|++
T Consensus 310 ~TL~fa~r~~ 319 (319)
T cd01376 310 STLNFASRSK 319 (319)
T ss_pred HHHHHHHhhC
Confidence 9999999985
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.7e-74 Score=632.92 Aligned_cols=330 Identities=40% Similarity=0.616 Sum_probs=293.4
Q ss_pred CCEEEEEEeCCCCCCCCCC--CcceeeecC-CeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCCC
Q 004272 393 GSIRVYCRVRPFLSGQSNY--LSTVDHIEE-GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGY 468 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~~--~~~i~~~~~-~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G~ 468 (764)
+||+|+|||||+.+.|... ...+...++ .++.+..+.......+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5899999999998877542 223333333 556665543323357899999999999999999998 599999999999
Q ss_pred CeEEEeeccCCCCCceEecCCCCC-------CcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCC
Q 004272 469 NVCIFAYGQTGSGKTYTMTGPREL-------TEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G~~~~-------~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~ 541 (764)
|+||||||||||||||||+|+... ....+||+||++++||..++.. ...|.|++||+|||||+|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCCc
Confidence 999999999999999999997542 1456899999999999998765 4589999999999999999999876
Q ss_pred C-CCCceeEeec--CCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC---CCc
Q 004272 542 G-SNRRLEIRNS--SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SGT 615 (764)
Q Consensus 542 ~-~~~~l~ir~~--~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~---~~~ 615 (764)
. ..+++.++++ ..+|++|+|++++.|.|++|+++++..|.++|++++|.+|..|||||+||+|+|.+.... ...
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~ 239 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEEL 239 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCcc
Confidence 4 4568999999 588999999999999999999999999999999999999999999999999999877543 234
Q ss_pred eEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEe
Q 004272 616 MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVH 695 (764)
Q Consensus 616 ~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ 695 (764)
...|+|+|||||||||..+.++.+.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||||+|+||+|
T Consensus 240 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 240 VKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcccccCcc
Q 004272 696 ISPEPDAVGETISTLKFAERVATVELGAA 724 (764)
Q Consensus 696 ISP~~~~~~ETlsTL~FA~r~~~v~~g~~ 724 (764)
|||...+++||++||+||+|+++|++.|.
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~ 348 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKPE 348 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999999998763
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.6e-74 Score=626.70 Aligned_cols=320 Identities=41% Similarity=0.674 Sum_probs=294.0
Q ss_pred CCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCCCC
Q 004272 393 GSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYN 469 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G~N 469 (764)
.+|+|+|||||+.+.|.. ...++...++.++++..+. ..+.|.||+||+++++|++||+. +.|+|+++++|+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~----~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n 77 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD----DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYN 77 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC----CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 489999999999887632 3344444455577776542 45799999999999999999998 5999999999999
Q ss_pred eEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCceeE
Q 004272 470 VCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~i 549 (764)
+||||||||||||||||+|+.. ...++||+||++++||..+........|.|++||+|||||+++|||++. ...+.+
T Consensus 78 ~~i~ayG~tgSGKT~Tm~G~~~-~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i 154 (325)
T cd01369 78 GTIFAYGQTGSGKTYTMEGPPG-DPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS--KDNLQV 154 (325)
T ss_pred ceEEEeCCCCCCceEEecCCCC-ccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc--cCCceE
Confidence 9999999999999999999764 2457899999999999999887777889999999999999999999765 456899
Q ss_pred eecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecCCC
Q 004272 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGS 629 (764)
Q Consensus 550 r~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLAGS 629 (764)
++++.+|++++|++++.|.|.+|+..+|..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+|||||||
T Consensus 155 ~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGs 234 (325)
T cd01369 155 HEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGS 234 (325)
T ss_pred EEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred cCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC-CCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHH
Q 004272 630 ERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN-PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETIS 708 (764)
Q Consensus 630 Er~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~-~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETls 708 (764)
||..+.+++|.+++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||+|+|+||+||||...+++||++
T Consensus 235 E~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~ 314 (325)
T cd01369 235 EKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLS 314 (325)
T ss_pred CcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHH
Confidence 9999999999999999999999999999999999887 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q 004272 709 TLKFAERVATV 719 (764)
Q Consensus 709 TL~FA~r~~~v 719 (764)
||+||+|+++|
T Consensus 315 TL~~a~r~~~i 325 (325)
T cd01369 315 TLRFGARAKTI 325 (325)
T ss_pred HHHHHHHhhcC
Confidence 99999999875
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.6e-74 Score=627.42 Aligned_cols=324 Identities=43% Similarity=0.710 Sum_probs=291.5
Q ss_pred CCEEEEEEeCCCCCCCCCC-Ccceeee--cCCeEEEeCCCCCC-CCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCC
Q 004272 393 GSIRVYCRVRPFLSGQSNY-LSTVDHI--EEGNITINTPSKHG-KGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~~-~~~i~~~--~~~~i~i~~p~~~g-~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G 467 (764)
.+|+|++||||+.+.|... ...+..+ +++.+.+..|.... ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3799999999999876542 2223333 46777887765322 257899999999999999999998 59999999999
Q ss_pred CCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCce
Q 004272 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l 547 (764)
||+||||||||||||||||+|++. ....+||+||++++||..++...+ ..|.|.+||+|||||+|+|||.+.. .+.+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~-~~~l 157 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-PPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ-KKKL 157 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-cccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC-CCce
Confidence 999999999999999999999754 345799999999999998877655 6899999999999999999997653 3579
Q ss_pred eEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC---CCceEEEEEEEE
Q 004272 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SGTMYRGCMHLV 624 (764)
Q Consensus 548 ~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~---~~~~~~s~L~lV 624 (764)
.+++++.++++|.|++++.|.|++|+..+|..|.++|.+++|.+|.+|||||+||+|+|.+.+.. .+....|+|+||
T Consensus 158 ~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~V 237 (333)
T cd01371 158 ELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLV 237 (333)
T ss_pred eEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987763 445678999999
Q ss_pred ecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCC-CCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCH
Q 004272 625 DLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP-HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAV 703 (764)
Q Consensus 625 DLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~-hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~ 703 (764)
|||||||..+.+..|++++|+..||+||.+|++||.+|++++. |||||+||||+||+|+|||||+|+||+||+|...++
T Consensus 238 DLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~ 317 (333)
T cd01371 238 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNY 317 (333)
T ss_pred ECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccH
Confidence 9999999999999999999999999999999999999998775 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 004272 704 GETISTLKFAERVATV 719 (764)
Q Consensus 704 ~ETlsTL~FA~r~~~v 719 (764)
+||++||+||+|++.|
T Consensus 318 ~eTl~TL~fa~r~r~I 333 (333)
T cd01371 318 DETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999876
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=5.7e-74 Score=624.94 Aligned_cols=324 Identities=55% Similarity=0.882 Sum_probs=296.7
Q ss_pred CCCEEEEEEeCCCCCCCCCCCcceeee-cC--CeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhhHHHHHHHHCCC
Q 004272 392 KGSIRVYCRVRPFLSGQSNYLSTVDHI-EE--GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGY 468 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~~~~~i~~~-~~--~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~ 468 (764)
+|+|+|+|||||+.+++......+..+ ++ ..+.+..+ ....+.|.||+||+++++|++||+.++|+|+++++|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG---TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC---CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCC
Confidence 699999999999998875433333333 33 44555432 2346899999999999999999999999999999999
Q ss_pred CeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhcc-ceEEEEEEEEEEEeCCeeeeccCCCC-CCCc
Q 004272 469 NVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKD-IFRYDVAVQMLEIYNEQVRDLLVTDG-SNRR 546 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~-~~~~~V~vS~~EIYnE~V~DLL~~~~-~~~~ 546 (764)
|+||||||+|||||||||+|+. .++||+||++++||..++...+ .+.|.|.+||+|||||+++|||++.. ....
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~----~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~ 153 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPP----ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKK 153 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCC----CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCc
Confidence 9999999999999999999954 6789999999999998877654 68999999999999999999998753 3568
Q ss_pred eeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEec
Q 004272 547 LEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDL 626 (764)
Q Consensus 547 l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDL 626 (764)
++|++++.+++++.|++++.|.|++|+.+++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||||
T Consensus 154 l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDL 233 (329)
T cd01366 154 LEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDL 233 (329)
T ss_pred eEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999888788889999999999
Q ss_pred CCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHH
Q 004272 627 AGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (764)
Q Consensus 627 AGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ET 706 (764)
||||+..+.++.+.+++|+..||+||++|++||.+|+++..|||||+||||+||+|+|||+++|+||+||||...+++||
T Consensus 234 aGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~et 313 (329)
T cd01366 234 AGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSET 313 (329)
T ss_pred CCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccC
Q 004272 707 ISTLKFAERVATVELG 722 (764)
Q Consensus 707 lsTL~FA~r~~~v~~g 722 (764)
++||+||+|+++|++|
T Consensus 314 l~tL~~a~~~~~i~~~ 329 (329)
T cd01366 314 LCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999999875
No 18
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-75 Score=655.27 Aligned_cols=356 Identities=39% Similarity=0.613 Sum_probs=320.5
Q ss_pred CCCEEEEEEeCCCCCCCCCC-CcceeeecCCeEEEeCCC-CC----CCCceEEEcceecCC-------CCChHhHHhhh-
Q 004272 392 KGSIRVYCRVRPFLSGQSNY-LSTVDHIEEGNITINTPS-KH----GKGWKSFSFNKVYGP-------SATQAEVFSDM- 457 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~~-~~~i~~~~~~~i~i~~p~-~~----g~~~~~F~FD~VF~~-------~atQ~eVf~~v- 457 (764)
..+|||.+||||+..+|.+. ..|+..++....+++.|. +. .++.++|.||++|.+ -+.|++||+-+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 35899999999999988763 456777887777777652 22 246799999999986 36899999997
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh-ccceEEEEEEEEEEEeCCeeee
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-KDIFRYDVAVQMLEIYNEQVRD 536 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~-~~~~~~~V~vS~~EIYnE~V~D 536 (764)
.-+|+++|+|||+||||||||||||||||+| +.+.+|||||.+..||..+... .....|.|.|||+|||||++||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmG----t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~D 158 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMG----TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRD 158 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeec----cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhh
Confidence 7789999999999999999999999999999 5678999999999999988654 3567899999999999999999
Q ss_pred ccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC--CC
Q 004272 537 LLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT--SG 614 (764)
Q Consensus 537 LL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~--~~ 614 (764)
||.|.++.+.+++++++-.|.+|.||+...|+|++|+..+|..|+++|++++|+||..|||||+||.|.|++.-.+ ++
T Consensus 159 LLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg 238 (1714)
T KOG0241|consen 159 LLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTG 238 (1714)
T ss_pred hhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876432 22
Q ss_pred --ceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc------cCCCCCCCCChhhHHhhhccCC
Q 004272 615 --TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ------KNPHVPYRNSKLTQLLQDSLGG 686 (764)
Q Consensus 615 --~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~------k~~hiPYR~SKLT~LLqdsLgG 686 (764)
....|+|.|||||||||..++++.|+|++|+.+||+||++||.||+||++ ++++||||||.||+||||+|||
T Consensus 239 ~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGG 318 (1714)
T KOG0241|consen 239 HSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGG 318 (1714)
T ss_pred cchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCC
Confidence 23568999999999999999999999999999999999999999999985 3468999999999999999999
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCcccccCCc--hHHHHHHHHHHHHHHHhhhhhc
Q 004272 687 QAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKDS--SDVKELKEQVLTLSVTVISIEF 752 (764)
Q Consensus 687 nskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~~--~~v~~L~~ei~~Lk~~l~~~~~ 752 (764)
||+|+||+||||++++|+||++|||||+|++.|.+. +.+|.++ +-+++|++|+..|+..|.++++
T Consensus 319 NsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~-avvNedpnarvirElReEve~lr~qL~~ae~ 385 (1714)
T KOG0241|consen 319 NSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNH-AVVNEDPNARVIRELREEVEKLREQLEQAEA 385 (1714)
T ss_pred CceeEEEEEecccccchHHHHHHHHHHHHHHHhhcc-ccccCCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999875 5577775 4699999999999999988654
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.6e-74 Score=623.07 Aligned_cols=314 Identities=40% Similarity=0.648 Sum_probs=287.6
Q ss_pred CEEEEEEeCCCCCCCCCCCcceeeecCC-eEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCCCCeE
Q 004272 394 SIRVYCRVRPFLSGQSNYLSTVDHIEEG-NITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYNVC 471 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~~~~~i~~~~~~-~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G~N~~ 471 (764)
+|+|+|||||+...|.....++..++++ .+.+..| ...+.|.||+||+++++|++||+. +.|+|+++++|+|+|
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 6999999999998876544555555555 6666544 246899999999999999999998 599999999999999
Q ss_pred EEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCceeEee
Q 004272 472 IFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRN 551 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ir~ 551 (764)
|||||||||||||||+|++ .++||+||++++||..+.... ...|.|++||+|||||+|+|||.+.. ..+++++
T Consensus 77 i~ayG~tgSGKT~T~~G~~----~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~~ 149 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDE----QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP--QELRIRE 149 (321)
T ss_pred EEeecCCCCCCceeccCCC----CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC--CCceEEE
Confidence 9999999999999999954 678999999999999887655 45899999999999999999997664 6799999
Q ss_pred cCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCC---CceEEEEEEEEecCC
Q 004272 552 SSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTS---GTMYRGCMHLVDLAG 628 (764)
Q Consensus 552 ~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~---~~~~~s~L~lVDLAG 628 (764)
++.++++++|++++.|.|++|+..+|..|.++|.+++|.+|.+|||||+||+|+|.+.+... +....|+|+||||||
T Consensus 150 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAG 229 (321)
T cd01374 150 DPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAG 229 (321)
T ss_pred CCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999887654 667889999999999
Q ss_pred CcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC--CCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHH
Q 004272 629 SERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN--PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (764)
Q Consensus 629 SEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~--~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ET 706 (764)
|||....+ .+.+++|+.+||+||.+|++||.+|++++ .|||||+||||+||+|+|||+|+|+||+||||...+++||
T Consensus 230 sE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eT 308 (321)
T cd01374 230 SERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEET 308 (321)
T ss_pred CCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHH
Confidence 99999988 89999999999999999999999999885 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 004272 707 ISTLKFAERVATV 719 (764)
Q Consensus 707 lsTL~FA~r~~~v 719 (764)
++||+||+|+++|
T Consensus 309 l~TL~~a~r~~~i 321 (321)
T cd01374 309 LNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.6e-73 Score=624.21 Aligned_cols=320 Identities=41% Similarity=0.656 Sum_probs=288.7
Q ss_pred CEEEEEEeCCCCCCCCCC--Ccceeee-cCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCCCC
Q 004272 394 SIRVYCRVRPFLSGQSNY--LSTVDHI-EEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYN 469 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~~--~~~i~~~-~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G~N 469 (764)
+|+|||||||+.+.|... ..++... ++..+++.. .+.|.||+||+++++|++||+. +.|+|+++++|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~-------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n 74 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT-------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYN 74 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC-------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 699999999999777543 2233322 233444422 5789999999999999999998 5899999999999
Q ss_pred eEEEeeccCCCCCceEecCCCC--CCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCC-CCCc
Q 004272 470 VCIFAYGQTGSGKTYTMTGPRE--LTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG-SNRR 546 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~G~~~--~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~-~~~~ 546 (764)
+||||||||||||||||+|+.. ....++||+||++++||..++.......|.|.+||+|||||+|+|||.+.. ....
T Consensus 75 ~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 154 (341)
T cd01372 75 ATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSP 154 (341)
T ss_pred cceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCC
Confidence 9999999999999999999753 135679999999999999998877778999999999999999999998764 3568
Q ss_pred eeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC----------CCce
Q 004272 547 LEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT----------SGTM 616 (764)
Q Consensus 547 l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~----------~~~~ 616 (764)
+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|.+|||||+||+|+|.+.+.. ....
T Consensus 155 l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd01372 155 IQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNST 234 (341)
T ss_pred ceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999988763 3457
Q ss_pred EEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC---CCCCCCCChhhHHhhhccCCCccEEEE
Q 004272 617 YRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN---PHVPYRNSKLTQLLQDSLGGQAKTLMF 693 (764)
Q Consensus 617 ~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~---~hiPYR~SKLT~LLqdsLgGnskt~mI 693 (764)
..|+|+||||||||+..+++++|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|||+++|+||
T Consensus 235 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I 314 (341)
T cd01372 235 LTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMI 314 (341)
T ss_pred eeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 88999999999999999999999999999999999999999999999876 799999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccc
Q 004272 694 VHISPEPDAVGETISTLKFAERVATVE 720 (764)
Q Consensus 694 ~~ISP~~~~~~ETlsTL~FA~r~~~v~ 720 (764)
+||||...+++||++||+||+|+++|+
T Consensus 315 ~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 315 ACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999885
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.7e-73 Score=620.75 Aligned_cols=319 Identities=44% Similarity=0.647 Sum_probs=285.1
Q ss_pred CEEEEEEeCCCCCCCCCCCcceeeecCCeEEEeCCCC-------CCCCceEEEcceecCCCCChHhHHhhh-HHHHHHHH
Q 004272 394 SIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSK-------HGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVL 465 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~~~~~i~~~~~~~i~i~~p~~-------~g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl 465 (764)
.|+|+|||||+...+... .....++..+++..|.. .+...+.|.||+||++ ++|++||+.+ .|+|++++
T Consensus 1 ~i~V~vRvRP~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~ 77 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSS--IKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSAL 77 (334)
T ss_pred CeEEEEECCCCCCCCCcc--EEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHh
Confidence 589999999998754431 22223445566655532 2224578999999999 9999999995 99999999
Q ss_pred CCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCC---
Q 004272 466 DGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDG--- 542 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~--- 542 (764)
+|+|+||||||||||||||||+|+.. ...++||+||++++||..++... ...|.|++||+|||||+|+|||++..
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 155 (334)
T cd01375 78 DGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEAL 155 (334)
T ss_pred CCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCcccc
Confidence 99999999999999999999999764 34578999999999999987654 45799999999999999999998774
Q ss_pred -CCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeee--cCCCceEEE
Q 004272 543 -SNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKD--LTSGTMYRG 619 (764)
Q Consensus 543 -~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~--~~~~~~~~s 619 (764)
..+.+.|++++.++++|.|+++++|.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+ ...+....|
T Consensus 156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s 235 (334)
T cd01375 156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLS 235 (334)
T ss_pred ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999873 345567889
Q ss_pred EEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC-CCCCCCCChhhHHhhhccCCCccEEEEEeeCC
Q 004272 620 CMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN-PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISP 698 (764)
Q Consensus 620 ~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~-~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP 698 (764)
+|+|||||||||..+.++++.+++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||
T Consensus 236 ~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp 315 (334)
T cd01375 236 KLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWV 315 (334)
T ss_pred EEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 004272 699 EPDAVGETISTLKFAERVA 717 (764)
Q Consensus 699 ~~~~~~ETlsTL~FA~r~~ 717 (764)
...+++||++||+||+|++
T Consensus 316 ~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 316 EPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred chhhHHHHHHHHHHHHhcC
Confidence 9999999999999999984
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=9.6e-70 Score=591.01 Aligned_cols=320 Identities=47% Similarity=0.750 Sum_probs=292.6
Q ss_pred CEEEEEEeCCCCCCCCCCCcceeeecC-CeEEEeCCCCC-CCCceEEEcceecCCCCChHhHHhhh-HHHHHHHHCCCCe
Q 004272 394 SIRVYCRVRPFLSGQSNYLSTVDHIEE-GNITINTPSKH-GKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDGYNV 470 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~~~~~i~~~~~-~~i~i~~p~~~-g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~G~N~ 470 (764)
+|+|||||||+...+......+..+++ +++.+..|... ....+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998776443444445544 88888876431 22568999999999999999999985 8999999999999
Q ss_pred EEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhcc-ceEEEEEEEEEEEeCCeeeeccCCCCCCCceeE
Q 004272 471 CIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKD-IFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~-~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~i 549 (764)
||||||+|||||||||+|+. .++||+||++++||..+..... ...|.|++||+|||+|+|+|||.+......+.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSP----KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred eEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 99999999999999999954 6789999999999999877653 568999999999999999999987645678999
Q ss_pred eecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCc--eEEEEEEEEecC
Q 004272 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT--MYRGCMHLVDLA 627 (764)
Q Consensus 550 r~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~--~~~s~L~lVDLA 627 (764)
++++.+++++.|++++.|+|++|++.++..|.++|.+++|.+|..|||||+||+|+|...+..... ...|+|+|||||
T Consensus 157 ~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLa 236 (328)
T cd00106 157 REDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLA 236 (328)
T ss_pred EEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998876665 889999999999
Q ss_pred CCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC--CCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHH
Q 004272 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN--PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGE 705 (764)
Q Consensus 628 GSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~--~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~E 705 (764)
|+|+....+..+.+++|+..||+||++|++||.+|+.++ .|||||+||||+||||+|||+++|+||+||+|...+++|
T Consensus 237 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e 316 (328)
T cd00106 237 GSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE 316 (328)
T ss_pred CCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 004272 706 TISTLKFAERVA 717 (764)
Q Consensus 706 TlsTL~FA~r~~ 717 (764)
|++||+||+|++
T Consensus 317 Tl~tL~~a~r~~ 328 (328)
T cd00106 317 TLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.9e-69 Score=590.61 Aligned_cols=325 Identities=49% Similarity=0.750 Sum_probs=294.2
Q ss_pred CEEEEEEeCCCCCCCCCC-Ccceeee-cC--CeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCCC
Q 004272 394 SIRVYCRVRPFLSGQSNY-LSTVDHI-EE--GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGY 468 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~~-~~~i~~~-~~--~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G~ 468 (764)
+|+|+|||||+...|... ...+..+ ++ .++++..+.. ....+.|.||+||+++++|++||+. +.|+|+++++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN-RKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC-CCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 689999999998876532 2233333 33 2667666532 3356899999999999999999998 589999999999
Q ss_pred CeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCcee
Q 004272 469 NVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLE 548 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ 548 (764)
|+||||||+|||||||||+|+ ..++||+||++++||..+....+...|.|++||+|||+|+|+|||++. .+.+.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--~~~l~ 153 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT----PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--PKKLE 153 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC----CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--CCCcE
Confidence 999999999999999999995 357899999999999999877767799999999999999999999765 56799
Q ss_pred EeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEee--ecCCCceEEEEEEEEec
Q 004272 549 IRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGK--DLTSGTMYRGCMHLVDL 626 (764)
Q Consensus 549 ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~--~~~~~~~~~s~L~lVDL 626 (764)
+++++.+++++.|++++.|.|++|+.+++..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+||||
T Consensus 154 i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDL 233 (335)
T smart00129 154 IREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDL 233 (335)
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999976 44566788999999999
Q ss_pred CCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc--cCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHH
Q 004272 627 AGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ--KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVG 704 (764)
Q Consensus 627 AGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~--k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ 704 (764)
||+||....++.|++++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+++
T Consensus 234 aGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~ 313 (335)
T smart00129 234 AGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLE 313 (335)
T ss_pred CCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchH
Confidence 99999999999999999999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCccc
Q 004272 705 ETISTLKFAERVATVELGAAR 725 (764)
Q Consensus 705 ETlsTL~FA~r~~~v~~g~~~ 725 (764)
||++||+||+++++|+++|.+
T Consensus 314 eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 314 ETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHHHHHHhhcccCCCc
Confidence 999999999999999988753
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.4e-69 Score=589.49 Aligned_cols=318 Identities=46% Similarity=0.723 Sum_probs=277.2
Q ss_pred EeCCCCCCCCCCCcc-eeeec---CCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCCCCeEEEe
Q 004272 400 RVRPFLSGQSNYLST-VDHIE---EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYNVCIFA 474 (764)
Q Consensus 400 RVRP~~~~e~~~~~~-i~~~~---~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G~N~~Ifa 474 (764)
||||+.+.|...... ..... ................+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899998776542221 11111 1111111111222356899999999999999999999 599999999999999999
Q ss_pred eccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccc--eEEEEEEEEEEEeCCeeeeccCCCC--CCCceeEe
Q 004272 475 YGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDI--FRYDVAVQMLEIYNEQVRDLLVTDG--SNRRLEIR 550 (764)
Q Consensus 475 YGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~--~~~~V~vS~~EIYnE~V~DLL~~~~--~~~~l~ir 550 (764)
||+|||||||||+|+ ....++||+||++++||..++..... +.|.|+|||+|||||+|+|||++.. ..+.+.++
T Consensus 81 yG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred ecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 999999999999996 13568999999999999999887664 8999999999999999999998873 35689999
Q ss_pred ecCCCC-ccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCc----eEEEEEEEEe
Q 004272 551 NSSQTG-LNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGT----MYRGCMHLVD 625 (764)
Q Consensus 551 ~~~~~g-~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~----~~~s~L~lVD 625 (764)
+++..| ++|.|+++++|.|.+|+..+|..|.++|.+++|.+|..|||||+||+|+|.+.+...+. ...|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 999876 99999999999999999999999999999999999999999999999999999877654 4889999999
Q ss_pred cCCCcCccccCCc-hhhHHHHHHhhHhHHHHHHHHHHHhcc--CCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCC
Q 004272 626 LAGSERVNKSEVT-GDRLKEAQHINRSLSALGDVIASLAQK--NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDA 702 (764)
Q Consensus 626 LAGSEr~~~s~~~-g~rlkE~~~INkSLsaLg~VI~aLa~k--~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~ 702 (764)
|||+|+..+..+. +.+++|+..||+||.+|++||.+|+++ ..|||||+||||+||+|+|||||+|+||+||||...+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 9999999988864 888999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 004272 703 VGETISTLKFAERVATV 719 (764)
Q Consensus 703 ~~ETlsTL~FA~r~~~v 719 (764)
++||++||+||+++++|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999976
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-66 Score=581.04 Aligned_cols=330 Identities=39% Similarity=0.610 Sum_probs=294.1
Q ss_pred ccCCCEEEEEEeCCCCCCCCCCCcceeeecCCeEEEeCCCC--------CCCCceEEEcceecCCCCChHhHHhh-hHHH
Q 004272 390 DLKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSK--------HGKGWKSFSFNKVYGPSATQAEVFSD-MQPL 460 (764)
Q Consensus 390 ~lkg~IrV~~RVRP~~~~e~~~~~~i~~~~~~~i~i~~p~~--------~g~~~~~F~FD~VF~~~atQ~eVf~~-v~pl 460 (764)
+.+..|.|||||||+.+ ......++..+++.+|.+..|.. .|...+.|.|.+||+|+++|.+||+. +.|+
T Consensus 28 ~~~d~v~v~~rvrP~~~-~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~pl 106 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD-ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPL 106 (809)
T ss_pred hhhcchheeEeecCCCC-CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHH
Confidence 56788999999999886 33345678888999999987732 22356789999999999999999998 5999
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh--------------------------
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-------------------------- 514 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~-------------------------- 514 (764)
|.+++.|.|..+|+||.|||||||||+|+ +..+||+||+++-||..+..+
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~----~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~ 182 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGT----PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQ 182 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecC----CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999995 457899999999999775421
Q ss_pred --------------------------------------ccceEEEEEEEEEEEeCCeeeeccCCCCCCC---c-eeEeec
Q 004272 515 --------------------------------------KDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR---R-LEIRNS 552 (764)
Q Consensus 515 --------------------------------------~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~---~-l~ir~~ 552 (764)
.....|.|+|||+|||||.|||||.+.+... . ..++++
T Consensus 183 lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d 262 (809)
T KOG0247|consen 183 LKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRED 262 (809)
T ss_pred hhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhc
Confidence 0224689999999999999999997764332 2 567888
Q ss_pred CCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC--CCceEEEEEEEEecCCCc
Q 004272 553 SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT--SGTMYRGCMHLVDLAGSE 630 (764)
Q Consensus 553 ~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~--~~~~~~s~L~lVDLAGSE 630 (764)
.++..+|.|+++|.|+|.+|+++++..|+++|++++|.+|..|||||+||+|.+-+.... ++....|.|.||||||||
T Consensus 263 ~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 263 TNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred cCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccch
Confidence 889999999999999999999999999999999999999999999999999999877655 677889999999999999
Q ss_pred CccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc-----CCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHH
Q 004272 631 RVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-----NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGE 705 (764)
Q Consensus 631 r~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k-----~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~E 705 (764)
|..+++++|.||+||.+||.||.+||.||.+|.++ +.+||||+||||++++.+|.|..+..||+||+|.+++|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 99999999999999999999999999999999753 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCcc
Q 004272 706 TISTLKFAERVATVELGAA 724 (764)
Q Consensus 706 TlsTL~FA~r~~~v~~g~~ 724 (764)
+++.|+||+-+..|.+..+
T Consensus 423 nl~vlkFaeiaq~v~v~~~ 441 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVARP 441 (809)
T ss_pred HHHHHHHHHhcccccccCc
Confidence 9999999999999976544
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-63 Score=546.66 Aligned_cols=326 Identities=31% Similarity=0.469 Sum_probs=283.2
Q ss_pred CCEEEEEEeCCCCCCCCCCC-cceeee-cCCeEEEeCCCCCC-----CCceEEEcceecCCCCChHhHHhh-hHHHHHHH
Q 004272 393 GSIRVYCRVRPFLSGQSNYL-STVDHI-EEGNITINTPSKHG-----KGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSV 464 (764)
Q Consensus 393 g~IrV~~RVRP~~~~e~~~~-~~i~~~-~~~~i~i~~p~~~g-----~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~sv 464 (764)
..|.|++|-||+...|.... ..+..+ .++.++++.|...- -..+.|.||.+||..+++++||.. ++|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 46999999999998775422 223344 55666666653211 145789999999999999999997 69999999
Q ss_pred HCCCCeEEEeeccCCCCCceEecCCCCCCc--ccccchHHHHHHHHHHHhhh-ccceEEEEEEEEEEEeCCeeeeccCCC
Q 004272 465 LDGYNVCIFAYGQTGSGKTYTMTGPRELTE--KSQGVNYRALSDLFLIAEQR-KDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (764)
Q Consensus 465 l~G~N~~IfaYGqTGSGKTyTm~G~~~~~~--~~~GIi~ral~~LF~~~~~~-~~~~~~~V~vS~~EIYnE~V~DLL~~~ 541 (764)
|+|--+|+||||||||||||||-|...... -..||..++.+|+|..+... -....+.|+++|||||+.+|||||+.
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~- 366 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND- 366 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-
Confidence 999999999999999999999988654322 24599999999999988652 23467899999999999999999954
Q ss_pred CCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEE
Q 004272 542 GSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCM 621 (764)
Q Consensus 542 ~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L 621 (764)
.++|.+.+|.+..+.|.|+.+..|.+.+|++++|+.|+..|+.+.|..|..|||||+||+|.+.... +...+|++
T Consensus 367 --k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKf 441 (676)
T KOG0246|consen 367 --KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKF 441 (676)
T ss_pred --ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEE
Confidence 5789999999999999999999999999999999999999999999999999999999999996432 25789999
Q ss_pred EEEecCCCcCc-cccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCC-CccEEEEEeeCCC
Q 004272 622 HLVDLAGSERV-NKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGG-QAKTLMFVHISPE 699 (764)
Q Consensus 622 ~lVDLAGSEr~-~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgG-nskt~mI~~ISP~ 699 (764)
.||||||+||. +.+.+..+.-.|+..|||||.||..||.||.+.+.|+|||.||||++|+|||-| ||+|+||+||||.
T Consensus 442 SlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg 521 (676)
T KOG0246|consen 442 SLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPG 521 (676)
T ss_pred EEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCC
Confidence 99999999995 555677777889999999999999999999999999999999999999999977 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccCcc
Q 004272 700 PDAVGETISTLKFAERVATVELGAA 724 (764)
Q Consensus 700 ~~~~~ETlsTL~FA~r~~~v~~g~~ 724 (764)
..+.+.||+|||||.||+.......
T Consensus 522 ~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 522 ISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred cchhhhhHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999998755433
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.7e-64 Score=575.76 Aligned_cols=341 Identities=37% Similarity=0.581 Sum_probs=298.5
Q ss_pred eCCCCCCCCC--CCcceeee-cCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCCCCeEEEeec
Q 004272 401 VRPFLSGQSN--YLSTVDHI-EEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYNVCIFAYG 476 (764)
Q Consensus 401 VRP~~~~e~~--~~~~i~~~-~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G~N~~IfaYG 476 (764)
|||+...+.. ...|+... ....+.+. +..+|+||+||+....|.++|+. |+|+++.+++|||++++|||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig-------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlayg 73 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG-------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYG 73 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec-------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeec
Confidence 6888766543 22333322 22233332 35789999999999999999998 79999999999999999999
Q ss_pred cCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCceeEeecCCCC
Q 004272 477 QTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTG 556 (764)
Q Consensus 477 qTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ir~~~~~g 556 (764)
||||||||||.+.......+.|+|||++.++|..+..... +.|.|.|+|+|||+|.|+|||.|+.....+.+++ +.++
T Consensus 74 QtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~ 151 (913)
T KOG0244|consen 74 QTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGE 151 (913)
T ss_pred ccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCc
Confidence 9999999999886443334469999999999999877655 7899999999999999999998766666678888 7788
Q ss_pred ccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeee-cCCCceEEEEEEEEecCCCcCcccc
Q 004272 557 LNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKD-LTSGTMYRGCMHLVDLAGSERVNKS 635 (764)
Q Consensus 557 ~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~-~~~~~~~~s~L~lVDLAGSEr~~~s 635 (764)
+.+.|+++++|.+..++...|..|.-.|++++|+||..|||||+|||+.+.+.. .......+++|||||||||||.+++
T Consensus 152 it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT 231 (913)
T KOG0244|consen 152 ITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKT 231 (913)
T ss_pred eEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccccc
Confidence 999999999999999999999999999999999999999999999999998743 3444567899999999999999999
Q ss_pred CCchhhHHHHHHhhHhHHHHHHHHHHHhccCC--CCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHH
Q 004272 636 EVTGDRLKEAQHINRSLSALGDVIASLAQKNP--HVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFA 713 (764)
Q Consensus 636 ~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~--hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA 713 (764)
+++|+|++|+.+||.+|++||+||+||..... |||||+||||+||||+||||+.|+||+||||+..+++||++||+||
T Consensus 232 ~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya 311 (913)
T KOG0244|consen 232 KAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYA 311 (913)
T ss_pred ccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999987655 9999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCcccccCC--chHHHHHHHHHHHHHHHhhhhh
Q 004272 714 ERVATVELGAARVNKD--SSDVKELKEQVLTLSVTVISIE 751 (764)
Q Consensus 714 ~r~~~v~~g~~~~n~~--~~~v~~L~~ei~~Lk~~l~~~~ 751 (764)
.|++.|++.+ .+|.+ +.++..||.|+..|+.+|..+.
T Consensus 312 ~Rak~iknk~-vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 312 DRAKQIKNKP-VVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred hHHHHhcccc-cccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999854 46666 4679999999999999998764
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-59 Score=540.12 Aligned_cols=336 Identities=41% Similarity=0.644 Sum_probs=289.9
Q ss_pred CCCEEEEEEeCCCCCCCCCCCcceeeecCCe-EEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCCCC
Q 004272 392 KGSIRVYCRVRPFLSGQSNYLSTVDHIEEGN-ITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDGYN 469 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~~~~~i~~~~~~~-i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G~N 469 (764)
-.+++++++..|-..++ .+....+.. +.+.. .....|.||+||++.++|++||+. +.|+++++++|||
T Consensus 21 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N 90 (568)
T COG5059 21 VSDIKSTIRIIPGELGE-----RLINTSKKSHVSLEK-----SKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYN 90 (568)
T ss_pred ecCceEEEeecCCCcch-----heeeccccccccccc-----ccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhccc
Confidence 46788888888854442 111111111 11110 015679999999999999999998 6999999999999
Q ss_pred eEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCceeE
Q 004272 470 VCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEI 549 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~i 549 (764)
+||||||||||||||||.| ....+||+|+++.+||..++.......|.|.+||+|||||.++|||.+.... +.+
T Consensus 91 ~TvfayGqTgsgKtyt~~G----~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--~~~ 164 (568)
T COG5059 91 CTVFAYGQTGSGKTYTMSG----TEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES--LNI 164 (568)
T ss_pred ceEEEEcccCCCceeEeec----CccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc--ccc
Confidence 9999999999999999999 4578999999999999999887766789999999999999999999766432 678
Q ss_pred eecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecCCC
Q 004272 550 RNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGS 629 (764)
Q Consensus 550 r~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLAGS 629 (764)
+++...++.|.++++..+.+.+|++.+|..|..+|.+++|.+|..|||||++|++++.+.+...+....++|+|||||||
T Consensus 165 ~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagS 244 (568)
T COG5059 165 REDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGS 244 (568)
T ss_pred cccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccc
Confidence 89999999999999999999999999999999999999999999999999999999999988777777789999999999
Q ss_pred cCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc--cCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHH
Q 004272 630 ERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ--KNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETI 707 (764)
Q Consensus 630 Er~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~--k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl 707 (764)
|+...++..+.|++|+..||+||.+||+||.+|.. +..|||||+||||||||++|||+++|.|||||+|...+++||.
T Consensus 245 E~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~ 324 (568)
T COG5059 245 ERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETI 324 (568)
T ss_pred cccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHH
Confidence 99999999999999999999999999999999997 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCcccccC---CchHHHHHHHHHHHHH
Q 004272 708 STLKFAERVATVELGAARVNK---DSSDVKELKEQVLTLS 744 (764)
Q Consensus 708 sTL~FA~r~~~v~~g~~~~n~---~~~~v~~L~~ei~~Lk 744 (764)
+||+||.|++.|++- +..+. -+..+.+++.++...+
T Consensus 325 ~tL~~a~rak~I~~~-~~~~~~~~~~~~~~~~~~d~~~~~ 363 (568)
T COG5059 325 NTLKFASRAKSIKNK-IQVNSSSDSSREIEEIKFDLSEDR 363 (568)
T ss_pred HHHHHHHHHhhcCCc-ccccCcCcchHHHHHHHhhhhhhh
Confidence 999999999999863 33441 2334444444444333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1e-49 Score=400.97 Aligned_cols=176 Identities=58% Similarity=0.922 Sum_probs=167.8
Q ss_pred HHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCC
Q 004272 453 VFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNE 532 (764)
Q Consensus 453 Vf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE 532 (764)
||+.+.|+|+.+++|||+||||||||||||||||+|++ .++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHH--------------------------
Confidence 99997799999999999999999999999999999964 678999999987
Q ss_pred eeeeccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC
Q 004272 533 QVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT 612 (764)
Q Consensus 533 ~V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~ 612 (764)
+++++..|.++|++++|.+|+.|||||++|+|++.+.+..
T Consensus 58 ----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 58 ----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred ----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecC
Confidence 7889999999999999999999999999999999988765
Q ss_pred C---CceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCcc
Q 004272 613 S---GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAK 689 (764)
Q Consensus 613 ~---~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnsk 689 (764)
. +....++|+||||||||+.++.+..+++++|+.+||+||++|++||.+|++++.|||||+||||+||||+|||||+
T Consensus 98 ~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~ 177 (186)
T cd01363 98 ASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSR 177 (186)
T ss_pred CCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCe
Confidence 5 5677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCC
Q 004272 690 TLMFVHISP 698 (764)
Q Consensus 690 t~mI~~ISP 698 (764)
|+||+||||
T Consensus 178 t~~i~~vsP 186 (186)
T cd01363 178 TLMVACISP 186 (186)
T ss_pred EEEEEEeCc
Confidence 999999999
No 30
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.94 E-value=7.2e-27 Score=230.34 Aligned_cols=139 Identities=29% Similarity=0.390 Sum_probs=117.3
Q ss_pred hcCCCCCCCchHHHHHHHH-hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCC
Q 004272 22 HGNRPRDLDLESRKAEEAA-SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESP 100 (764)
Q Consensus 22 ~~~r~~~~~la~~~~~~~a-~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~ 100 (764)
|++|++.|||++..+.+.+ +++.+++.||++||..+.... .+...+|.++|+||+|||+|+|+|.||++++++.+.
T Consensus 1 ~~n~~~~~gl~~~v~~k~~~k~~~~~~~el~~WI~~~~~~~---~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~ 77 (193)
T KOG2046|consen 1 MANRGPSYGLSREVQQKIESKYDDELEKELREWIENVVLTE---LPARGDFQDLLKDGVILCKLINKLYPGVVKKINESK 77 (193)
T ss_pred CCCCCCccchHHHHHHHhhcccCHHHHHHHHHHHHHhhccC---CCcccCHHHHHcchHHHHHHHHHhCcCccccccccc
Confidence 6899999999888877765 777777777777776542222 233568999999999999999999999998887655
Q ss_pred CccccCCccccchhhHHHHHHHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccccCCCCccccC
Q 004272 101 DTVLVPDGAALSAYQYFENVRNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQTGGNGVWKFG 174 (764)
Q Consensus 101 ~~~~~~~~~~~~~f~~~ENI~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g~~g~~~~~ 174 (764)
++|.+||||++|+.||+.+||+ .|+++||||++|+.+|+.||++|++++.++...+...|...
T Consensus 78 -----------~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~~~~~~~~g~k 143 (193)
T KOG2046|consen 78 -----------MAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKGLFSGPGIGPK 143 (193)
T ss_pred -----------ccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCCHHHHHHHHHHHHHHHhhccccCCCCcCCc
Confidence 8999999999999999999999 69999999999999999999999999998875555555433
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.78 E-value=3.5e-19 Score=167.21 Aligned_cols=109 Identities=21% Similarity=0.444 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
+...++..||+++++.-.. ++.+|.+.|+|||+||+++|...|+-|+ +.++. ++|.+||||
T Consensus 13 ~~~kev~~Wie~~l~~k~~-------ppgdll~~lkdGv~lCril~ea~~~~I~-yKeSk-----------mpFVQmenI 73 (178)
T COG5199 13 KQQKEVTLWIETVLGEKFE-------PPGDLLSLLKDGVRLCRILNEASPLDIK-YKESK-----------MPFVQMENI 73 (178)
T ss_pred HHHHHHHHHHHHHHHhhhC-------CcccHHHHHhcchHHHHHHhhcCcccce-ecccC-----------CceeeHHHH
Confidence 4566889999999985332 2357999999999999999999999864 44443 799999999
Q ss_pred HHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccccCCC
Q 004272 121 RNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQTGGN 168 (764)
Q Consensus 121 ~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g~~ 168 (764)
..|+.+.++++|| +|+|+||||.+|..+|+.||++|++|++++-++..
T Consensus 74 s~Fin~~~k~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~~ 124 (178)
T COG5199 74 SSFINGLKKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSG 124 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999 69999999999999999999999999999887643
No 32
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.62 E-value=8.9e-16 Score=139.81 Aligned_cols=103 Identities=28% Similarity=0.536 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVR 121 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~ 121 (764)
.+.++.+|++..++... + +...+|.+.|+||++||+|+|.+.|+.++.....+ ...|++++||.
T Consensus 2 ~~~~l~~Win~~l~~~~----~--~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~----------~~~~~~~~Ni~ 65 (107)
T cd00014 2 QKEELLRWINKVLGEYG----P--VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINP----------LSRFKRLENIN 65 (107)
T ss_pred hHHHHHHHHHHHhccCC----C--ccHHHHHHHHhchHHHHHHHHHHCccccccccccc----------cchhhHHHHHH
Confidence 46789999999986411 1 35789999999999999999999999998765422 25899999999
Q ss_pred HHHHHHHhcCCC-C-ccCCccccCCChhHHHHHHHHHHhcc
Q 004272 122 NFLVAVQEMGLP-T-FEASDLEQGGKSARVVNCVLALKSYG 160 (764)
Q Consensus 122 ~FL~ac~~lGvp-~-Fe~~DL~eg~n~~kVv~cL~aL~~~~ 160 (764)
.||++|+++|+| . |++.||++++|..+|+.||.+|.++.
T Consensus 66 ~~l~~~~~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 66 LALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred HHHHHHHHcCCceeccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 999999999999 4 99999999999999999999998764
No 33
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.58 E-value=2.5e-15 Score=172.22 Aligned_cols=114 Identities=27% Similarity=0.486 Sum_probs=101.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccch
Q 004272 34 RKAEEAASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSA 113 (764)
Q Consensus 34 ~~~~~~a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~ 113 (764)
.++.+.-+|-.||+.||++++++ .+| +..|.++|||||+|.+|..+++|..+.+|.... + .+
T Consensus 37 lraYeyLCRv~EaK~WIee~~~~----~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~-~---------LQ 98 (1054)
T COG5261 37 LRAYEYLCRVSEAKIWIEEVIEE----ALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPAD-K---------LQ 98 (1054)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcc----CCc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecc-c---------ce
Confidence 34555568888999999999985 222 678999999999999999999999999998764 2 68
Q ss_pred hhHHHHHHHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhccccccc
Q 004272 114 YQYFENVRNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQT 165 (764)
Q Consensus 114 f~~~ENI~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~ 165 (764)
|++.+||+.||.....+||| -||..||||+||++||+.||+||.++--|++-
T Consensus 99 frHtdNIN~Fld~i~~vGlPe~FhFEl~DlYekKN~pkViyciHaL~~~ls~~g~ 153 (1054)
T COG5261 99 FRHTDNINAFLDLIEHVGLPESFHFELQDLYEKKNIPKVIYCIHALISMLSWPGK 153 (1054)
T ss_pred eeccccHHHHHhHhhhcCCcceeeeehHhhhccCCcchhHHHHHHHHHHhcCCCC
Confidence 99999999999999999999 49999999999999999999999999988763
No 34
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.52 E-value=1.4e-14 Score=160.46 Aligned_cols=117 Identities=23% Similarity=0.389 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhhhcCCCC--CCCChHHHHHHccchhHHHHHHHhhcCCCC--CceecCCCccccCCccccchhhHHHH
Q 004272 44 YEAAGWLRKMVGVVAARDLP--AEPSEEEFRLGLRSGIILCNVINKVQPGAV--PKVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 44 ~e~~~Wl~~~lg~~~~~~l~--~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v--~ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
.++++||+.+ .+++..+-- .....-||+.+|||||+||+|+|.|.|++| ++|+-.|+. ++|.|..|
T Consensus 5 rqCarWLidc-kVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQm---------SqFLClkN 74 (865)
T KOG2996|consen 5 RQCARWLIDC-KVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQM---------SQFLCLKN 74 (865)
T ss_pred HHHHHHHhhc-cccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCc---------cchhhHhh
Confidence 3689999999 565533321 234556999999999999999999999999 488887754 89999999
Q ss_pred HHHHHHHH-HhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccccCCCCc
Q 004272 120 VRNFLVAV-QEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQTGGNGV 170 (764)
Q Consensus 120 I~~FL~ac-~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g~~g~ 170 (764)
|+.||.+| +.+|+. +|++.|||+-++|.||+.+|..|+.+......|-+++
T Consensus 75 IrtFl~~C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ial~rGi~PF 129 (865)
T KOG2996|consen 75 IRTFLMFCCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPIALNRGIRPF 129 (865)
T ss_pred HHHHHHHHHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccChHHHhcCCCCC
Confidence 99999999 789998 7999999999999999999999999888777776654
No 35
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-14 Score=173.75 Aligned_cols=104 Identities=29% Similarity=0.504 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
+|-+||+.||++|+|. ++| +..+|.++|||||+|.+|.|.+.|..-.++....+ ..|+|.+||
T Consensus 42 Cr~eE~k~W~e~cl~e----dL~---pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~----------~~frHtdNi 104 (1401)
T KOG2128|consen 42 CRVEEAKRWIEECLGE----DLP---PTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKAND----------LHFRHTDNI 104 (1401)
T ss_pred HhHHHHHHHHHHHhcc----cCC---CchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCC----------ceeecchhH
Confidence 7778999999999984 554 44689999999999999999999977666655442 249999999
Q ss_pred HHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhcccc
Q 004272 121 RNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEW 162 (764)
Q Consensus 121 ~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~ 162 (764)
..||.|++..||| -||+.|+|+|||++ |+.||+||+.|-..
T Consensus 105 ~q~~~~me~iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~k 148 (1401)
T KOG2128|consen 105 NQWLRAMESIGLPEIFYPETTDVYEGKNIP-VIYCIHALSLYLFK 148 (1401)
T ss_pred HHHHHHHhhcCCCcccccchhhhhcCCCCc-eeeHHHHHHHHHhc
Confidence 9999999999999 49999999999999 99999999988765
No 36
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.51 E-value=3.2e-14 Score=128.37 Aligned_cols=99 Identities=25% Similarity=0.463 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
+.++.+|++..++.. .....++|.++|+||++||+|+|.+.|+.+++....+ +...|++++||..
T Consensus 2 ~~~l~~Win~~l~~~------~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~---------~~~~~~~~~Ni~~ 66 (103)
T smart00033 2 EKTLLRWVNSLLAEY------GKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNA---------SLSRFKKIENINL 66 (103)
T ss_pred hHHHHHHHHHHcccC------CCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccc---------cccHHHHHHhHHH
Confidence 568899999998631 1355689999999999999999999999998654332 1257999999999
Q ss_pred HHHHHHhcCCC--CccCCccccC-CChhHHHHHHHHH
Q 004272 123 FLVAVQEMGLP--TFEASDLEQG-GKSARVVNCVLAL 156 (764)
Q Consensus 123 FL~ac~~lGvp--~Fe~~DL~eg-~n~~kVv~cL~aL 156 (764)
|+.+|+++|.. .|++.||++| +++..|+.||+.+
T Consensus 67 ~l~~~~~~g~~~~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 67 ALSFAEKLGGKLVLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred HHHHHHHcCCeeeccCHHHHhhcchHHHHHHHHHHhC
Confidence 99999999953 7999999999 7999999999864
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=2.5e-13 Score=152.05 Aligned_cols=109 Identities=28% Similarity=0.438 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
..+.|++..|++.+.....-.+| +||.++|.||||||+|+|.|+|.+|+.|+.+. +....++.-+|+.||
T Consensus 572 ~eE~eL~~QLRk~iEtRLk~sLp-----~Dl~aALtDGViLChLaN~lRPRSV~SIHVPS-----PaV~klsmarcrrNV 641 (722)
T KOG0532|consen 572 REEKELMLQLRKLIETRLKVSLP-----EDLAAALTDGVILCHLANHLRPRSVASIHVPS-----PAVPKLSMARCRRNV 641 (722)
T ss_pred hHHHHHHHHHHHHHHHHhcccCc-----hhHHHHhhcchhhHhhhcccCCCCccceecCC-----CccchhHHHHHHHhH
Confidence 33446777777776544433333 78999999999999999999999999999876 356678899999999
Q ss_pred HHHHHHHHhcCCC---CccCCccccC--CChhHHHHHHHHHHhc
Q 004272 121 RNFLVAVQEMGLP---TFEASDLEQG--GKSARVVNCVLALKSY 159 (764)
Q Consensus 121 ~~FL~ac~~lGvp---~Fe~~DL~eg--~n~~kVv~cL~aL~~~ 159 (764)
.+||.||++|||| ++...|+..+ ++..+|++++++++..
T Consensus 642 dnFLeaCRkiGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~ 685 (722)
T KOG0532|consen 642 DNFLEACRKIGVPEADLCSPMDILQKIERNPRKVARTVLTVGKK 685 (722)
T ss_pred HHHHHHHHHcCCChHhhcCHHHhhhhhcccchhHHHHHHhhccc
Confidence 9999999999999 6999999999 9999999999999843
No 38
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.38 E-value=1.4e-12 Score=118.69 Aligned_cols=106 Identities=26% Similarity=0.491 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
+.++.+|++..++.. +.. ....+|.+.|+||++||+|+|++.|+.++--...|. .. +.|.+++||..
T Consensus 1 e~~ll~Win~~l~~~-~~~----~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~-------~~-~~~~~~~Ni~~ 67 (108)
T PF00307_consen 1 EKELLKWINSHLEKY-GKG----RRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPN-------LK-SPFDKLENIEL 67 (108)
T ss_dssp HHHHHHHHHHHHTTS-TTT----STCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTS-------SS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHcccc-cCC----CCcCcHHHHhcCHHHHHHHHHHHhhccchhhhcccc-------ch-hhhHHHHHHHH
Confidence 467899999998742 111 222378999999999999999999998842222221 01 68999999999
Q ss_pred HHHHHHh-cCCC-CccCCccccCCChhHHHHHHHHHHhccc
Q 004272 123 FLVAVQE-MGLP-TFEASDLEQGGKSARVVNCVLALKSYGE 161 (764)
Q Consensus 123 FL~ac~~-lGvp-~Fe~~DL~eg~n~~kVv~cL~aL~~~~~ 161 (764)
|+++|++ +|+| .+++.||++++|...|+.+|.+|.++++
T Consensus 68 ~l~~~~~~lg~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 68 ALEAAEKKLGIPPLLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp HHHHHHHHTTSSCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 9999988 9999 5899999999999999999999987653
No 39
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.09 E-value=5.6e-13 Score=155.33 Aligned_cols=268 Identities=28% Similarity=0.342 Sum_probs=176.5
Q ss_pred HHHhhhhhhhhccCCCEEEEEEeCCCCCCCCCCCcceeeec-----CCeEEEeCCCCCCCCceEEEcceecCCCCChHhH
Q 004272 379 EENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTVDHIE-----EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEV 453 (764)
Q Consensus 379 ~e~r~l~n~~~~lkg~IrV~~RVRP~~~~e~~~~~~i~~~~-----~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eV 453 (764)
..+|.|++.++..+ +++|+|+|+|..........+....+ ...+....+.........|.||.+|.+...+..+
T Consensus 292 kLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 370 (568)
T COG5059 292 KLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILV 370 (568)
T ss_pred HHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHH
Confidence 45899999999999 99999999998754332222222111 1122221111112245679999999999999999
Q ss_pred HhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhc-cceEEEEEEEEEEEeCC
Q 004272 454 FSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK-DIFRYDVAVQMLEIYNE 532 (764)
Q Consensus 454 f~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~-~~~~~~V~vS~~EIYnE 532 (764)
+.....+++..++| +++||++++|+++||.- ...++..-.+...|....... ..|.|...+.+.++|-.
T Consensus 371 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 440 (568)
T COG5059 371 FREQSQLSQSSLSG----IFAYMQSLKKETETLKS------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEID 440 (568)
T ss_pred HHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999954 334555555567776554433 45677777777777722
Q ss_pred eeeeccCCCCCCCceeEeec-CCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeec
Q 004272 533 QVRDLLVTDGSNRRLEIRNS-SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDL 611 (764)
Q Consensus 533 ~V~DLL~~~~~~~~l~ir~~-~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~ 611 (764)
...++...........+... .........++. ......+..... .+...+..+++..|.+++++|.+|..+..+...
T Consensus 441 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 518 (568)
T COG5059 441 RLLLLREEELSKKKTKIHKLNKLRHDLSSLLSS-IPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNS 518 (568)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhh-cchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhh
Confidence 22222221111110000000 000000011111 111112222222 567888899999999999999999888766544
Q ss_pred CCCceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHh
Q 004272 612 TSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLA 663 (764)
Q Consensus 612 ~~~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa 663 (764)
..+... ++.|||||+||. .+...|+++++...+|++|..+|++|.++.
T Consensus 519 ~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 519 STKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 333322 799999999999 999999999999999999999999998864
No 40
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.90 E-value=1.5e-05 Score=70.63 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=58.2
Q ss_pred CCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHHHHHHHHHHH-hcCCC--CccC
Q 004272 63 PAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFENVRNFLVAVQ-EMGLP--TFEA 137 (764)
Q Consensus 63 ~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~ENI~~FL~ac~-~lGvp--~Fe~ 137 (764)
|..+..++|...|+||.+||.|++...|+.++ .|...+ .++.+..+.|+..|..+|. .+|.. -|++
T Consensus 8 ~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~---------~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~ 78 (85)
T PF11971_consen 8 PYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKT---------TMSQADSLYNLQLLNSFCQSHLGFSCCHLEP 78 (85)
T ss_pred CCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHccccc---------chHHHHhhhhHHHHHHHHHHHcCCCcCcCCH
Confidence 55677789999999999999999999999996 555444 2378999999999999994 58877 3677
Q ss_pred Ccccc
Q 004272 138 SDLEQ 142 (764)
Q Consensus 138 ~DL~e 142 (764)
.||..
T Consensus 79 edl~~ 83 (85)
T PF11971_consen 79 EDLLY 83 (85)
T ss_pred HHHhc
Confidence 77653
No 41
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.57 E-value=5.2e-05 Score=85.17 Aligned_cols=105 Identities=18% Similarity=0.335 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHhhhh--cCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHH
Q 004272 42 RRYEAAGWLRKMVGVVA--ARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYF 117 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~--~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~ 117 (764)
.+.+-..||...++.-+ ..-+|.+|...+|.+..+||++||+|+|-=.||+|. -|+.. ..+.+|...
T Consensus 120 Ek~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~k---------k~Lnp~~~~ 190 (627)
T KOG0046|consen 120 EKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTK---------KKLNPFERN 190 (627)
T ss_pred HHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccC---------CcCChhhhc
Confidence 34567889999987432 444688999999999999999999999999999996 23321 235799999
Q ss_pred HHHHHHHHHHHhcCCC--CccCCccccCCChhHHHHHHHHH
Q 004272 118 ENVRNFLVAVQEMGLP--TFEASDLEQGGKSARVVNCVLAL 156 (764)
Q Consensus 118 ENI~~FL~ac~~lGvp--~Fe~~DL~eg~n~~kVv~cL~aL 156 (764)
||..--|.-++.+|+. -+-+.||-||+.- -|+--|..+
T Consensus 191 EN~~l~lnSAkAiGc~VvNIga~Dl~eGrph-LVLGLiwQi 230 (627)
T KOG0046|consen 191 ENLNLALNSAKAIGCTVVNIGAQDLAEGRPH-LVLGLIWQI 230 (627)
T ss_pred cchhhHHhhcccccceEEecCchhhhcCCce-eeHHHHHHH
Confidence 9999999999999988 3999999999863 244433333
No 42
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=97.20 E-value=0.0012 Score=58.95 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=60.6
Q ss_pred hHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHHHHHHH-HhcCCC---CccCCccccC
Q 004272 68 EEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNFLVAV-QEMGLP---TFEASDLEQG 143 (764)
Q Consensus 68 ~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~FL~ac-~~lGvp---~Fe~~DL~eg 143 (764)
...+...+|-|.=||-|-|.+.|..--.|...+.. ..=.+-..|-.|+.|| .++|+| .|..+|||..
T Consensus 3 Vt~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~---------~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~ 73 (89)
T PF06395_consen 3 VTQLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSD---------DLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGD 73 (89)
T ss_pred HHHHHHHHhCcCcHHHHHHccCCccCCCCCCCCcc---------hHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccC
Confidence 45689999999999999999999754455332210 1233456889999999 779999 5999999975
Q ss_pred --CChhHHHHHHHHH
Q 004272 144 --GKSARVVNCVLAL 156 (764)
Q Consensus 144 --~n~~kVv~cL~aL 156 (764)
..+.||+.++..|
T Consensus 74 dT~gfvKVi~~V~~v 88 (89)
T PF06395_consen 74 DTNGFVKVIKVVNRV 88 (89)
T ss_pred CCcchhhHHHHHHhh
Confidence 5677888877543
No 43
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.37 E-value=0.076 Score=61.05 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=61.7
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccch----HHHHHHHHHHH
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVN----YRALSDLFLIA 511 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi----~ral~~LF~~~ 511 (764)
..|....-|.|.-+|-. .|..||+.+-.|...-+ -.|.|||||||||-.-=. .-..|-++ --...+||...
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~-~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIA-KVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHH-HhCCCeEEEecchhHHHHHHHHH
Confidence 35777777888888753 35677888777776554 469999999999954100 00001111 11345777777
Q ss_pred hhhccceEEEEEEEEEEEeCCeee
Q 004272 512 EQRKDIFRYDVAVQMLEIYNEQVR 535 (764)
Q Consensus 512 ~~~~~~~~~~V~vS~~EIYnE~V~ 535 (764)
+..-.....+..|||+.-|.-.-|
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHhCcCcceEEEeeeccccCcccc
Confidence 666555678889999999975543
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.28 E-value=0.16 Score=56.78 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.6
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
.-.|+-||++|+|||++.-
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458889999999998873
No 45
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.86 E-value=0.071 Score=55.46 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=33.1
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..|+||.-+.. ..++..|..+..+.+.--..+|. +|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 35899986643 44677777666665552223444 78899999999998754
No 46
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.34 E-value=0.095 Score=56.73 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=27.8
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+.|++..+.+-.++.|+.-|+||||||+||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 3578888999999999999999999999983
No 47
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.34 E-value=0.44 Score=53.91 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.1
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 445888999999999875
No 48
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=91.30 E-value=0.48 Score=54.38 Aligned_cols=86 Identities=21% Similarity=0.413 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
+.-..-||..+ | ..|....+.+-||||.||-.+..+|.||.|- +++.+|. ...++|+..||=
T Consensus 390 er~fr~WmNSl-g--------v~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~-------~~~~~~kklENc 453 (627)
T KOG0046|consen 390 ERTFRLWMNSL-G--------VNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPS-------PLKMPFKKVENC 453 (627)
T ss_pred HHHHHHHHHhc-C--------CcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCC-------cccccHHHhhcc
Confidence 33556788876 4 3456678999999999999999999999995 5555541 112569999998
Q ss_pred HHHHHHHHhcCCCC--ccCCccccCC
Q 004272 121 RNFLVAVQEMGLPT--FEASDLEQGG 144 (764)
Q Consensus 121 ~~FL~ac~~lGvp~--Fe~~DL~eg~ 144 (764)
+.-.+-.+.++..+ ..-.|+++|.
T Consensus 454 Nyav~lGk~~~FSLVgi~G~DI~dGN 479 (627)
T KOG0046|consen 454 NYAVKLGKQLKFSLVGIAGQDIVDGN 479 (627)
T ss_pred hHHHHHHhhcceeeeccccccccccc
Confidence 88777777777763 8889999984
No 49
>PRK06893 DNA replication initiation factor; Validated
Probab=89.63 E-value=0.23 Score=51.93 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=32.9
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..++||..+.... ..-+ ..+.+.+-++++-.++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 4588999886542 2211 2223333457888899999999999999855
No 50
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.96 E-value=0.24 Score=52.04 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=33.3
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..|+||.-+.. .+...+..++.+.. ......++-||++|+||||.+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 45788866544 56667776655543 22234789999999999999854
No 51
>PRK12377 putative replication protein; Provisional
Probab=88.77 E-value=0.29 Score=52.11 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=36.2
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+||.-......|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 455444445567778887788888877654 4678899999999999865
No 52
>PRK06620 hypothetical protein; Validated
Probab=88.68 E-value=0.16 Score=52.69 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=34.6
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCC---eEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYN---VCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N---~~IfaYGqTGSGKTyTm~G 488 (764)
..|+||..+...+ +...|..++.+.+. -|+| -.++-||++||||||.+..
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 4688888665444 45578776655442 1444 3589999999999999853
No 53
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=88.41 E-value=0.57 Score=53.21 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCC-CceecCCCccccCCccccchhhHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV-PKVVESPDTVLVPDGAALSAYQYFENVR 121 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v-~ki~~~~~~~~~~~~~~~~~f~~~ENI~ 121 (764)
......|....+|. -.| +...-+|...-|||.++|+|+|..+|..+ +.+..-++ -+-++..|+++||-+
T Consensus 127 ~~~lllwc~~~t~~----y~p-~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qk-----knk~~n~~qafe~a~ 196 (612)
T COG5069 127 HINLLLWCDEDTGG----YKP-EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQK-----KNKALNNFQAFENAN 196 (612)
T ss_pred hhhhheeccccccC----cCC-CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhh-----cccchhHHHHHHHHH
Confidence 34556676665552 234 44557899999999999999999999965 45554331 234456899999999
Q ss_pred HHHHHHHhcCCCC
Q 004272 122 NFLVAVQEMGLPT 134 (764)
Q Consensus 122 ~FL~ac~~lGvp~ 134 (764)
.|+.-.+.+|+..
T Consensus 197 k~Igi~rli~ved 209 (612)
T COG5069 197 KVIGIARLIGVED 209 (612)
T ss_pred HhhchHhhcCcce
Confidence 9999999999873
No 54
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.31 E-value=0.22 Score=57.39 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
...+..++..-++.|+.-|+||||||+||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4467788889999999999999999999965
No 55
>PRK08116 hypothetical protein; Validated
Probab=86.92 E-value=0.41 Score=51.38 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=36.8
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHC--CCCeEEEeeccCCCCCceEecC
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLD--GYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~--G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.++||.-. .+..+...|..+...++.+.. ..+..++-||++|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 45666533 355666677777777777654 3466799999999999999843
No 56
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.82 E-value=0.28 Score=58.34 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=36.8
Q ss_pred ceEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 435 ~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
...|+||..+-... +..+|..+..++...-.+||. ||-||.+|+||||.+..
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 35689998664333 445666555565554456776 89999999999999865
No 57
>PRK05642 DNA replication initiation factor; Validated
Probab=86.53 E-value=0.46 Score=49.89 Aligned_cols=50 Identities=18% Similarity=0.425 Sum_probs=30.7
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm~G 488 (764)
..|+||.-+.. .+...+..+..+.... .++ .-.++-||++|+||||-+..
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcC--ChHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHH
Confidence 45889887743 2344444443333221 122 34688999999999999854
No 58
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.28 E-value=0.54 Score=49.90 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=34.6
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.+||.-......|..++..+...++....|+ ..++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 3455433334557778877777777665443 3688999999999999855
No 59
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.18 E-value=0.38 Score=55.36 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=35.5
Q ss_pred ceEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 435 ~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
...|+||.-+-. .++...|..+..+... -..||. +|-||++|+||||.+..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 356899986643 4556677765555443 122665 99999999999999864
No 60
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.93 E-value=0.58 Score=48.00 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=33.3
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..++||....+ .+..++..++.++. ......|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 34777776632 45666666655543 4667789999999999999874
No 61
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.63 E-value=0.58 Score=48.42 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=32.5
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..|+||..+.. . ...+...++.++.. .+.+..++-||++||||||.+..
T Consensus 13 ~~~~~d~f~~~-~-~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAG-E-NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccC-C-cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 45889988732 2 23455555555442 23456789999999999998743
No 62
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.52 E-value=0.4 Score=54.30 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=34.2
Q ss_pred ceEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 435 ~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
...|+||.-.. ...+...|..+..+...--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 35689988442 34566677666555554211244 478899999999999854
No 63
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.56 E-value=0.44 Score=52.76 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=27.4
Q ss_pred HhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 451 AEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 451 ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..+++.+...++.+-.+. -.++-||++|+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 345555566777776554 5589999999999998855
No 64
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.16 E-value=0.47 Score=54.61 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=34.5
Q ss_pred ceEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 435 ~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
...|+||.-.. ...+...|..+..+.+.--..|| .++-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 35688888443 23556677766555554222345 478899999999999854
No 65
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.06 E-value=0.52 Score=54.42 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=33.7
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.|+||.-.... ++...|..+..+...--..|| .+|-||++|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999866443 455677665555442111245 478999999999999955
No 66
>PRK09087 hypothetical protein; Validated
Probab=83.67 E-value=0.53 Score=49.26 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=32.0
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..|+||.-+..+++ ..+|..+..+ ..-.+-.++-||++||||||.+..
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHHH
Confidence 45788887754444 4467644322 222355689999999999999853
No 67
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.66 E-value=0.75 Score=50.89 Aligned_cols=39 Identities=31% Similarity=0.589 Sum_probs=27.5
Q ss_pred CChHhHHhhhHHHHHHHHCC-CCeEEEeeccCCCCCceEe
Q 004272 448 ATQAEVFSDMQPLIRSVLDG-YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 448 atQ~eVf~~v~plV~svl~G-~N~~IfaYGqTGSGKTyTm 486 (764)
...++-++.+...+..++.| ...+++-||++|+|||+++
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34455555555556665554 5568999999999999987
No 68
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=82.85 E-value=3.2 Score=47.20 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=30.5
Q ss_pred EEEcceecCCCCChHhHHhhh-HHHHH-HHHC--C--CCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDM-QPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v-~plV~-svl~--G--~N~~IfaYGqTGSGKTyTm 486 (764)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ..-.|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 456666666554444444443 34432 3333 2 2456888999999999876
No 69
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=82.10 E-value=4.4 Score=52.87 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
+.-.-.|++..++.+. --..||..-|+||+.|.+|+..|.--..||-.... +-.+|.||+..
T Consensus 50 KKTFTKWvNShL~rv~-------c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGR-----------MRIH~LENvdK 111 (2473)
T KOG0517|consen 50 KKTFTKWVNSHLARVS-------CRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGR-----------MRIHCLENVDK 111 (2473)
T ss_pred HHhHHHHHHHHHHHhc-------chhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCc-----------eeehhHhhhHH
Confidence 3455679999987532 22368999999999999999999866666532222 67899999999
Q ss_pred HHHHHHhcCCC--CccCCccccC
Q 004272 123 FLVAVQEMGLP--TFEASDLEQG 143 (764)
Q Consensus 123 FL~ac~~lGvp--~Fe~~DL~eg 143 (764)
=|.+.++-.|+ ..-+.|+.+|
T Consensus 112 aLqFLkeqkVhLEniGshDIVDG 134 (2473)
T KOG0517|consen 112 ALQFLKEQKVHLENIGSHDIVDG 134 (2473)
T ss_pred HHHHHHhcccccccCCcccccCC
Confidence 99999876555 3666666665
No 70
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.87 E-value=1.1 Score=50.32 Aligned_cols=38 Identities=26% Similarity=0.487 Sum_probs=26.9
Q ss_pred ChHhHHhhhHHHHHHHHC-CCCeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLD-GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~-G~N~~IfaYGqTGSGKTyTm 486 (764)
.-++-++.+...+...+. +....++-||++|+|||+++
T Consensus 34 ~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 34 HREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 445555555555655554 44567899999999999987
No 71
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=81.79 E-value=2 Score=45.62 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecCCCcCc
Q 004272 567 VSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERV 632 (764)
Q Consensus 567 V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLAGSEr~ 632 (764)
+.+.+++...+..+... ..+. ...-|.-++.|+|.+.+.. .|+||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~~-------~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHVL-------NLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCCC-------ceEEEeCCCcccc
Confidence 46788888888766542 1111 1234667888998876542 5899999999653
No 72
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=0.95 Score=50.88 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHCCCCeE-EEeeccCCCCCceEe
Q 004272 455 SDMQPLIRSVLDGYNVC-IFAYGQTGSGKTYTM 486 (764)
Q Consensus 455 ~~v~plV~svl~G~N~~-IfaYGqTGSGKTyTm 486 (764)
+.+...+..++.|.-.. ++.||.||||||.|+
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 34445566666665444 999999999999887
No 73
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.53 E-value=1 Score=48.09 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=35.1
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
|.|..+-.+...+..+|..+..++..+-.|.|. +-||++|+||||...+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl--~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENL--VLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcE--EEECCCCCcHHHHHHH
Confidence 333333344557788888888888777756554 5699999999998865
No 74
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.05 E-value=0.71 Score=52.45 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=30.6
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..|+||.-.... ++.-.|.....+-+.--.-||. +|-||++|+||||-|..
T Consensus 82 ~~ytFdnFv~g~-~N~~A~aa~~~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 82 PKYTFDNFVVGP-SNRLAYAAAKAVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCchhheeeCC-chHHHHHHHHHHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 468998855443 3344444322222221112554 78999999999999954
No 75
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.66 E-value=0.94 Score=49.68 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=34.0
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCC-CCeEEEeeccCCCCCceEecC
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDG-YNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G-~N~~IfaYGqTGSGKTyTm~G 488 (764)
.+||.+-..+..+..++..+...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333335666776656666665543 234689999999999999965
No 76
>PRK08181 transposase; Validated
Probab=79.89 E-value=1.1 Score=48.13 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.8
Q ss_pred CCCCeEEEeeccCCCCCceEecC
Q 004272 466 DGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 78899999999999876
No 77
>PF13245 AAA_19: Part of AAA domain
Probab=79.84 E-value=0.82 Score=39.65 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=18.6
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
|..++. -+..+...|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 455556 333445589999999999843
No 78
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.79 E-value=1.1 Score=41.19 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=18.8
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+...+.......++-+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333434456888999999999876
No 79
>PRK08727 hypothetical protein; Validated
Probab=79.51 E-value=1.2 Score=46.63 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=27.9
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEecC
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm~G 488 (764)
..|+||.-+...+ + ....+..+ ..|+ .-.|+-||++|+||||.+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHHH
Confidence 3468887664333 2 22222222 2233 24599999999999999854
No 80
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=79.40 E-value=1.1 Score=43.51 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHCC-CCeEEEeeccCCCCCceEecC
Q 004272 458 QPLIRSVLDG-YNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 458 ~plV~svl~G-~N~~IfaYGqTGSGKTyTm~G 488 (764)
..+++.+-.+ ...-++..++||||||++|..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344444444 345556677999999999975
No 81
>PRK06526 transposase; Provisional
Probab=79.25 E-value=0.75 Score=49.06 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.4
Q ss_pred CCCCeEEEeeccCCCCCceEecC
Q 004272 466 DGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3555 68899999999999875
No 82
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=77.88 E-value=2.1 Score=47.24 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..++..++.+. ..|+-.|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 34556566554 44556699999999777
No 83
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.62 E-value=1.5 Score=47.04 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=28.6
Q ss_pred Hhh--hHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 454 FSD--MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 454 f~~--v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
|++ +.+.++.+.--..+.|+-.|+|||||++||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 455 3678888888889999999999999999983
No 84
>PRK10436 hypothetical protein; Provisional
Probab=77.26 E-value=1.1 Score=51.96 Aligned_cols=29 Identities=38% Similarity=0.437 Sum_probs=24.0
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..+..++..-++.|+..|+||||||+||.
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 34556667778899999999999999994
No 85
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.16 E-value=0.83 Score=41.49 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.9
Q ss_pred EEeeccCCCCCceEecC
Q 004272 472 IFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~G 488 (764)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56789999999999966
No 86
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=76.96 E-value=1.2 Score=51.93 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..+..++..-++.|+-.|+||||||+||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 355667777788899999999999999953
No 87
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=76.95 E-value=1.1 Score=53.36 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..+..++..-++.|+..|+||||||+||..
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 345666777789999999999999999844
No 88
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.80 E-value=0.95 Score=55.75 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=24.8
Q ss_pred HHhhhHHHHHHHHC--CCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVLD--GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl~--G~N~~IfaYGqTGSGKTyTm 486 (764)
=++.+..++..++. |-+.++|-||+||+|||.|+
T Consensus 763 EIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 763 EIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 34445556666664 44567899999999999998
No 89
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=76.23 E-value=1.3 Score=48.36 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=27.3
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+||.+.+ |+++.+.+..++. .|....++-||++|+|||++..
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 4666654 5555555444433 3443457889999999999873
No 90
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.01 E-value=29 Score=33.30 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHhhhhhhhhcc
Q 004272 316 SQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDL 391 (764)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~r~l~n~~~~l 391 (764)
..+..-+..+...+.++.+|+......+..+...+..|.++=..|...+.. +..++...-..|+-||++|..+
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~---~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSE---LEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Confidence 345556677778888888999999989988888888888777666665543 3445555667899999999764
No 91
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=75.36 E-value=1.4 Score=49.08 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=21.1
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..++.--...|+-.|+||||||+||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 4444454445778999999999999994
No 92
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.84 E-value=0.85 Score=42.28 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=13.1
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999887
No 93
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=74.79 E-value=9.9 Score=40.60 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=76.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCcccc
Q 004272 32 ESRKAEEAASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAAL 111 (764)
Q Consensus 32 a~~~~~~~a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~ 111 (764)
.+++..+.+.--.-+..||.+++- |...-.-.+.+-|-||.||-+|..++..- |+.... -++
T Consensus 81 ~sr~DpK~~el~kvLi~WiN~~L~-------~erIvVr~LeEDlfDGqilqkL~ekL~~~---klev~e--------vtq 142 (365)
T KOG3631|consen 81 TSRKDPKFEELVKVLIDWINDVLV-------PERIVVRSLEEDLFDGQILQKLFEKLAAL---KLEVAE--------VTQ 142 (365)
T ss_pred ccccChhHHHHHHHHHHHHHHhhc-------chhhhHHhhHHhhhhhHHHHHHHHHHHhh---hccchh--------hhh
Confidence 344444455555677788887752 33334457899999999999999998632 221111 012
Q ss_pred chhhHHHHHHHHHHHH-HhcCCCCcc---CCccccCCChhHHHHHHHHHHhccc
Q 004272 112 SAYQYFENVRNFLVAV-QEMGLPTFE---ASDLEQGGKSARVVNCVLALKSYGE 161 (764)
Q Consensus 112 ~~f~~~ENI~~FL~ac-~~lGvp~Fe---~~DL~eg~n~~kVv~cL~aL~~~~~ 161 (764)
+..-+..-..--|.++ +.+++|..+ ..|..-++|+..++.-|.||+.++.
T Consensus 143 se~~QkqKLq~Vleavnr~L~~~~~q~kWsvdsIh~Kdl~ailhLLVaLa~~fr 196 (365)
T KOG3631|consen 143 SEIGQKQKLQTVLEAVNRSLQLPEWQAKWSVDSIHNKDLVAILHLLVALAKHFR 196 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCchhhhccchhhhccchHHHHHHHHHHHHHHcC
Confidence 4455566777778888 779999543 3577889999999999999996543
No 94
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=74.24 E-value=4 Score=40.58 Aligned_cols=92 Identities=15% Similarity=0.306 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHHH-HH
Q 004272 47 AGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNF-LV 125 (764)
Q Consensus 47 ~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~F-L~ 125 (764)
..||..+ +...+...+...+.||++++.++.+..|..|.--+-.+.. +.-..+.|-..| .+
T Consensus 2 ~~WL~~l---------~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~---------s~~~Kl~NW~~Ln~k 63 (158)
T PF06294_consen 2 LKWLQSL---------DLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGN---------SVAQKLNNWETLNEK 63 (158)
T ss_dssp HHHHHHS-----------S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----S---------SHHHHHHHHHHHHHH
T ss_pred hHHHhcC---------CCCCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCC---------CHHHHHHHHHHHHHH
Confidence 4687762 2233345789999999999999999999988644333311 455678899999 88
Q ss_pred HHHhcCCCCccCCccc---cC--CChhHHHHHHHHHH
Q 004272 126 AVQEMGLPTFEASDLE---QG--GKSARVVNCVLALK 157 (764)
Q Consensus 126 ac~~lGvp~Fe~~DL~---eg--~n~~kVv~cL~aL~ 157 (764)
..+.+|++ |...+++ .+ +-...++.+|...-
T Consensus 64 vl~kl~~~-l~~~~i~~i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 64 VLKKLGIK-LDKEDIEGIINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp TTGGGT-----HHHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred HHHHcCCC-CCHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88999987 3333333 33 45556777776665
No 95
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=74.03 E-value=1.1 Score=40.57 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.1
Q ss_pred eEEEeeccCCCCCceEecC
Q 004272 470 VCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~G 488 (764)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999854
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.73 E-value=2 Score=49.64 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=35.3
Q ss_pred ceEEEcceecCCCCChHhHHhhhHHHHHHH--HCC--CCeEEEeeccCCCCCceEecC
Q 004272 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSV--LDG--YNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 435 ~~~F~FD~VF~~~atQ~eVf~~v~plV~sv--l~G--~N~~IfaYGqTGSGKTyTm~G 488 (764)
...|+||.-.-. .++...|..+..+.+.. ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 457999986643 35566666666555433 223 454 67899999999999854
No 97
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=73.43 E-value=1.2 Score=45.51 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=16.3
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
++.|+-.|+||||||+++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578889999999999984
No 98
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=73.02 E-value=1.8 Score=48.86 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=19.5
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+++.++. .++.|+-.|+||||||+||.
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 3344333 45577889999999999983
No 99
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=72.85 E-value=1.7 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=18.9
Q ss_pred HCCCCeEEEeeccCCCCCceEec
Q 004272 465 LDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 465 l~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+.-....|+-.|+||||||+||.
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHH
Confidence 33356889999999999999984
No 100
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=72.55 E-value=2.3 Score=41.01 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=21.9
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.++..+..|.+ ++..|+||||||+....
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 34556667777 67889999999998865
No 101
>PRK06921 hypothetical protein; Provisional
Probab=72.54 E-value=2.6 Score=45.29 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=25.2
Q ss_pred hHHhhhHHHHHHHHC---CCCeEEEeeccCCCCCceEecC
Q 004272 452 EVFSDMQPLIRSVLD---GYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 452 eVf~~v~plV~svl~---G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.++..+...++.+-. +..-.++-||++|+||||.+..
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 345445556665532 2345678899999999999865
No 102
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=72.25 E-value=1.9 Score=46.17 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=22.4
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..+..++..-.+.|+-.|+||||||+||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 34566666556678888999999999984
No 103
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=72.24 E-value=1.7 Score=44.30 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..|+.++...+-.++..|+.||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45566665555455568999999999883
No 104
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=71.78 E-value=1.4 Score=44.58 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=22.4
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+..+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 4445554555778899999999999999873
No 105
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=71.49 E-value=1.3 Score=45.75 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=29.8
Q ss_pred hHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHH
Q 004272 649 NRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (764)
Q Consensus 649 NkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ET 706 (764)
.....++-+.+..|.......+--...+...|-+.++.+.++ .|+.+|--+......
T Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~i-~IiDLs~~~~~~~~~ 220 (229)
T PF01935_consen 164 SSTIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGKI-VIIDLSGVDEEVQDI 220 (229)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCCE-EEEECCCCCHHHHHH
Confidence 344455555555555444433333445566666667655554 455776654444443
No 106
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=71.42 E-value=1 Score=44.18 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=17.8
Q ss_pred HhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 454 FSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 454 f~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
++.+..++.....|..-+++-+|.+|+|||+.+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 334444444334566788999999999999886
No 107
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=71.32 E-value=2.6 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=18.7
Q ss_pred HHHCCCCeEEEeeccCCCCCceEec
Q 004272 463 SVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 463 svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..+......++-+|++|+|||+++.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344445677889999999998873
No 108
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=70.86 E-value=0.61 Score=56.25 Aligned_cols=87 Identities=41% Similarity=0.698 Sum_probs=59.6
Q ss_pred ceEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh
Q 004272 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR 514 (764)
Q Consensus 435 ~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~ 514 (764)
...+.|+++..+...+..-+....+-+..++++++.. +|++|++.+.. ...|+..+....++......
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 92 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSN----QPGGLLARLFKELIDLANSD 92 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhc----CcchhHHHhhhhcccccccC
Confidence 4567888888877766666777777778888887776 89999999943 33455555555555443332
Q ss_pred ccceEEEEEEEEEEEeCCeeeeccCC
Q 004272 515 KDIFRYDVAVQMLEIYNEQVRDLLVT 540 (764)
Q Consensus 515 ~~~~~~~V~vS~~EIYnE~V~DLL~~ 540 (764)
.. ...++.|++.++|++..
T Consensus 93 ~~-------~~~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 93 KT-------SNVVEAYNERLRDLLSE 111 (670)
T ss_pred CC-------chhHHHHHHHHhhhccc
Confidence 22 11678899999999854
No 109
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=70.46 E-value=6.6 Score=42.97 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=21.8
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+.+++..++.+.- .|.-.|+||||||+.|-
T Consensus 133 ~~~~l~~~v~~~~-~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASRK-NIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCCC-EEEEECCCCCCHHHHHH
Confidence 5667777776543 45556999999999763
No 110
>PF12846 AAA_10: AAA-like domain
Probab=69.80 E-value=1.5 Score=46.30 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=16.1
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999984
No 111
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.50 E-value=2.7 Score=42.35 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=15.9
Q ss_pred CeEEEeeccCCCCCceEecC
Q 004272 469 NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G 488 (764)
.-.++-+|++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 34588899999999998865
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=68.86 E-value=9.1 Score=44.17 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999999876
No 113
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=68.61 E-value=3.2 Score=44.82 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCCChHhHHhhhHHHHHHHHCC--CCeEEEeeccCCCCCceEec
Q 004272 446 PSATQAEVFSDMQPLIRSVLDG--YNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 446 ~~atQ~eVf~~v~plV~svl~G--~N~~IfaYGqTGSGKTyTm~ 487 (764)
.-..|+++.+.+..+++....+ ....++-||++|+|||+...
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3355777777776666654432 22346779999999998773
No 114
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=68.28 E-value=2.1 Score=41.02 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=13.6
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
.-.+--.|+||+||||+-
T Consensus 53 pLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CEEEEeecCCCCcHHHHH
Confidence 444556799999999974
No 115
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=67.92 E-value=2 Score=45.72 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=19.5
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+..++...+.+ .+.|+-.|.||||||++|
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHH
Confidence 44444444444 344566699999999998
No 116
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.35 E-value=51 Score=33.15 Aligned_cols=19 Identities=11% Similarity=0.506 Sum_probs=13.5
Q ss_pred hhhhHHHHHHhhhhhhhhc
Q 004272 372 SGYHRVLEENRKLYNQVQD 390 (764)
Q Consensus 372 ~~~~~~~~e~r~l~n~~~~ 390 (764)
..|++.-.+|+++|+.+.|
T Consensus 162 ~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 162 QKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666678889998875
No 117
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=66.11 E-value=6.3 Score=41.53 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=30.5
Q ss_pred ecCCCCChHhHHhhhHHHHHHHHCC--CCeEEEeeccCCCCCceE
Q 004272 443 VYGPSATQAEVFSDMQPLIRSVLDG--YNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 443 VF~~~atQ~eVf~~v~plV~svl~G--~N~~IfaYGqTGSGKTyT 485 (764)
-|+.-..|+.+-.....+++.+... .=..++-||++|.|||+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 3555677999999889999988753 234578899999999754
No 118
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=66.08 E-value=3.2 Score=46.10 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=20.3
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+..++..++.+. ..|+-.|+||||||++|
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 455566555543 23566799999999998
No 119
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=65.79 E-value=2 Score=44.05 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=14.9
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57788999999999983
No 120
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=65.63 E-value=2.6 Score=38.65 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999875
No 121
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=65.58 E-value=3.4 Score=45.17 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..++..++.+. ..|+-.|+||||||++|.
T Consensus 122 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLAR-KNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34555555543 456788999999999983
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.56 E-value=4.6 Score=44.24 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=18.5
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
|...+..+----.+-||+.|+|||.|.
T Consensus 48 L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 48 LKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 333333333444677999999999997
No 123
>PF13479 AAA_24: AAA domain
Probab=65.30 E-value=2.7 Score=43.38 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=17.2
Q ss_pred CeEEEeeccCCCCCceEecC
Q 004272 469 NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G 488 (764)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 56789999999999998755
No 124
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.23 E-value=5.2 Score=45.40 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.7
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
...|+.+|+||+|||+|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999983
No 125
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=64.38 E-value=4 Score=45.78 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=27.2
Q ss_pred CCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 447 SATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 447 ~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+..|..+|+.+-..+.. .....+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 45689999986333333 44456788999999999987
No 126
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=64.07 E-value=3.7 Score=45.82 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=21.0
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+..++..++.+ ...|+-.|+||||||++|-.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 44556655543 23356779999999999843
No 127
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=64.06 E-value=2.8 Score=42.33 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=17.6
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.|..++.--. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 4455554333 456689999999998743
No 128
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=62.93 E-value=5.8 Score=42.89 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=14.6
Q ss_pred EEEeeccCCCCCceEecC
Q 004272 471 CIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G 488 (764)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 555669999999999854
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=62.47 E-value=4.1 Score=43.32 Aligned_cols=130 Identities=16% Similarity=0.242 Sum_probs=70.7
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeE-EEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhcc
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVC-IFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~-IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~ 516 (764)
..+|...+-+...+.+.+.+ ..+++|..+- ++-||..|+|||.++-. ++..... +
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVka------------------ll~~y~~--~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVKA------------------LLNEYAD--Q 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHHH------------------HHHHHhh--c
Confidence 44555555555554454444 5566776432 56699999999887732 2222111 1
Q ss_pred ceEEEEEEEEEEEeCCeeeeccCCCCCCCceeEeecCCC-CccCCCCeEEec-CCHHHHHHHHHhhhhccccccccCCCC
Q 004272 517 IFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQT-GLNVPDASLIPV-SSTADVINLMNLGQKNRAVGATALNDR 594 (764)
Q Consensus 517 ~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ir~~~~~-g~~v~~lt~v~V-~s~~e~~~ll~~g~~~R~~~sT~~N~~ 594 (764)
+ +.++||..+.+.||-.--. .++..+.. -+++.+|+.-.- .++..+..+|+-|...| ....-+..+
T Consensus 80 G------LRlIev~k~~L~~l~~l~~-----~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 80 G------LRLIEVSKEDLGDLPELLD-----LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred C------ceEEEECHHHhccHHHHHH-----HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 1 5678888887776631000 00001101 123444443322 34677778888777655 344555667
Q ss_pred CCCCcceEE
Q 004272 595 SSRSHSCLT 603 (764)
Q Consensus 595 SSRSH~ift 603 (764)
|.|-|.|=.
T Consensus 148 SNRRHLv~E 156 (249)
T PF05673_consen 148 SNRRHLVPE 156 (249)
T ss_pred cchhhccch
Confidence 778777643
No 130
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=62.46 E-value=9.4 Score=46.32 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=54.7
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccch----HHHHHHHHHHHhh
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVN----YRALSDLFLIAEQ 513 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi----~ral~~LF~~~~~ 513 (764)
|....-|.|.-.|..-|.. +++.+-+|...-+ .+|.||||||+||-.--.. ...+-++ .....+|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~-~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQ-VNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557788888776665 4555556643323 7899999999999652100 0011111 1234556665544
Q ss_pred hccceEEEEEEEEEEEeCCee
Q 004272 514 RKDIFRYDVAVQMLEIYNEQV 534 (764)
Q Consensus 514 ~~~~~~~~V~vS~~EIYnE~V 534 (764)
.-........|||+..|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 433345778899999996553
No 131
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=62.39 E-value=35 Score=43.78 Aligned_cols=27 Identities=33% Similarity=0.728 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+|..++.|.++.+.+ +||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLVim--PTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFVLM--PTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEEEc--CCCccHHHHH
Confidence 46788999999975555 9999999863
No 132
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=61.84 E-value=5.5 Score=41.30 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=16.6
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
++.++ .+-.+++.|+.||||||.-.
T Consensus 13 ~~al~--~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 13 LDALL--NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp HHHHH--H-SEEEEE--TTSSTTHHHH
T ss_pred HHHHH--hCCeEEEECCCCCcHHHHHH
Confidence 44444 56689999999999998763
No 133
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=61.52 E-value=4.6 Score=40.59 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=20.2
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+.+++..++... ..+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~g-~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEAR-KNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhCC-CEEEEECCCCCCHHHHHH
Confidence 445555555532 345667999999999873
No 134
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=61.35 E-value=4.6 Score=47.58 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=25.5
Q ss_pred hhHHHHHHHHCCCC--eEEEeeccCCCCCceEe
Q 004272 456 DMQPLIRSVLDGYN--VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 456 ~v~plV~svl~G~N--~~IfaYGqTGSGKTyTm 486 (764)
+|+..++..+.|.. -.++.+||+|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 47788888776664 56788999999999998
No 135
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.13 E-value=3.2 Score=38.11 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=13.3
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-||++|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999876
No 136
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=60.81 E-value=4.5 Score=44.97 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=56.4
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEecC-----CCC--------------------------CCcccccchHHHHH
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG-----PRE--------------------------LTEKSQGVNYRALS 505 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G-----~~~--------------------------~~~~~~GIi~ral~ 505 (764)
+..++..++++. +-|+-.|.||||||+++-- |+. .+.+..|-+ .++
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gev--tm~ 238 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEV--TMR 238 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceE--EHH
Confidence 345556666666 7788899999999998732 110 011112222 466
Q ss_pred HHHHHH-hhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHH
Q 004272 506 DLFLIA-EQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLM 577 (764)
Q Consensus 506 ~LF~~~-~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll 577 (764)
||.... ..+.+ .+-+-||+....+|||..-+. ...| ++..+.-.|+-|+..-+
T Consensus 239 dLvkn~LRmRPD------RIiVGEVRG~Ea~dLL~AmnT---------GHdG----~~~TlHans~~ea~~rl 292 (355)
T COG4962 239 DLVKNALRMRPD------RIIVGEVRGVEALDLLQAMNT---------GHDG----GMGTLHANSPREALTRL 292 (355)
T ss_pred HHHHHHhhcCcc------ceEEEEecCccHHHHHHHhcc---------CCCC----cceeeccCCHHHHHHHH
Confidence 776543 33333 244679999999999943221 1111 24556666776665443
No 137
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.08 E-value=3.5 Score=47.64 Aligned_cols=67 Identities=31% Similarity=0.410 Sum_probs=41.5
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEecCCC---------CCC-cccccchHHH---------HHHHHHHHhhhccceEE
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMTGPR---------ELT-EKSQGVNYRA---------LSDLFLIAEQRKDIFRY 520 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~G~~---------~~~-~~~~GIi~ra---------l~~LF~~~~~~~~~~~~ 520 (764)
-|..+.+|... +|++|||||||+...+|- ... ....|..|++ ..+||.... .+.|
T Consensus 104 sip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~----k~~~ 177 (482)
T KOG0335|consen 104 SIPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR----KFSY 177 (482)
T ss_pred ccceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH----hhcc
Confidence 35556677776 899999999999987751 000 1111122332 345555443 3567
Q ss_pred EEEEEEEEEeCC
Q 004272 521 DVAVQMLEIYNE 532 (764)
Q Consensus 521 ~V~vS~~EIYnE 532 (764)
.-.+-.+.+|+.
T Consensus 178 ~s~~~~~~~ygg 189 (482)
T KOG0335|consen 178 LSGMKSVVVYGG 189 (482)
T ss_pred cccceeeeeeCC
Confidence 778888899966
No 138
>PRK06547 hypothetical protein; Provisional
Probab=59.19 E-value=7.4 Score=39.02 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.++..+..+.-.-|.-+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 44555666666666777799999999865
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=59.08 E-value=4.8 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=17.0
Q ss_pred CCC-CeEEEeeccCCCCCceEec
Q 004272 466 DGY-NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 466 ~G~-N~~IfaYGqTGSGKTyTm~ 487 (764)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 4566779999999999874
No 140
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.99 E-value=5.4 Score=45.47 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=24.9
Q ss_pred ChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 449 TQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.|+.+...-.++...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 455555543334333445555567779999999998763
No 141
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=58.71 E-value=4.8 Score=44.60 Aligned_cols=27 Identities=44% Similarity=0.569 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.++..++.+. ..|+-.|.||||||++|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4455555433 24678899999999998
No 142
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=58.44 E-value=9.2 Score=42.65 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=22.8
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+..++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 456667667654 677888999999998773
No 143
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=58.24 E-value=5.8 Score=38.29 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
++..++++. .-++..|+||||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344555552 2345668999999998755
No 144
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.78 E-value=81 Score=34.01 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=46.2
Q ss_pred EcceecCCCCChHhHHhhh-HHHHHHHH---CCC--CeEEEeeccCCCCCceEecCCCC-------------CCcccccc
Q 004272 439 SFNKVYGPSATQAEVFSDM-QPLIRSVL---DGY--NVCIFAYGQTGSGKTYTMTGPRE-------------LTEKSQGV 499 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v-~plV~svl---~G~--N~~IfaYGqTGSGKTyTm~G~~~-------------~~~~~~GI 499 (764)
++..|=+-+..-++|-+.| -||.+.=+ =|. .--++.||+.|+|||-..-.-.. --..-.|-
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 3444444455555565555 45554433 133 23478999999999843311000 01123466
Q ss_pred hHHHHHHHHHHHhhhccc
Q 004272 500 NYRALSDLFLIAEQRKDI 517 (764)
Q Consensus 500 i~ral~~LF~~~~~~~~~ 517 (764)
=||.++|+|....+....
T Consensus 233 gprmvrdvfrlakenaps 250 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKENAPS 250 (408)
T ss_pred CcHHHHHHHHHHhccCCc
Confidence 799999999988776554
No 145
>PRK04195 replication factor C large subunit; Provisional
Probab=57.15 E-value=7.4 Score=45.31 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=27.1
Q ss_pred hHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
|+++-+.+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4444455666777766665 556888999999999877
No 146
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=56.78 E-value=68 Score=28.31 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Q 004272 321 QKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHG 366 (764)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (764)
....+.+|-.+++.++.++-.+...-..++..|.+++.+|...|..
T Consensus 30 ~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 30 YEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455888889999999999999999999999999999999877643
No 147
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=56.59 E-value=4.6 Score=37.99 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+..|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999875
No 148
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=55.90 E-value=4 Score=43.41 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.0
Q ss_pred CCeEEEeeccCCCCCceEecC
Q 004272 468 YNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G 488 (764)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 666777888999999999954
No 149
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=55.89 E-value=6.9 Score=39.22 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..++.++.|+| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 34455666887 467789999999773
No 150
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=55.77 E-value=8.3 Score=47.62 Aligned_cols=26 Identities=46% Similarity=0.492 Sum_probs=21.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+.+|+|+.|.| |||||||-+-
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHH
Confidence 3566778999999988 9999999764
No 151
>PTZ00424 helicase 45; Provisional
Probab=55.56 E-value=6.2 Score=44.17 Aligned_cols=27 Identities=44% Similarity=0.711 Sum_probs=21.4
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
...+..+++|.|+. ..++||||||.+.
T Consensus 56 ~~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 56 QRGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 35677788999865 5689999999765
No 152
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=54.82 E-value=9.7 Score=40.43 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.4
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
..-++-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3457789999999999873
No 153
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=54.22 E-value=3.5 Score=37.70 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=13.4
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999887
No 154
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=54.06 E-value=8.5 Score=42.32 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=26.9
Q ss_pred CCChHhHHhhhHHHHHHHHC-C-CCeEEEeeccCCCCCceEec
Q 004272 447 SATQAEVFSDMQPLIRSVLD-G-YNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 447 ~atQ~eVf~~v~plV~svl~-G-~N~~IfaYGqTGSGKTyTm~ 487 (764)
-..|+++-..+..++..... | ....++-||++|+|||+...
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 34566666666666655432 2 22357779999999999874
No 155
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=53.67 E-value=3.9 Score=41.53 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
-++.+|+||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999884
No 156
>PLN03025 replication factor C subunit; Provisional
Probab=53.58 E-value=7.6 Score=42.58 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=22.1
Q ss_pred hHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
|+++...++.++. .|.-..++-||++|+|||++...
T Consensus 18 ~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 18 NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHHH
Confidence 4444444443332 34333456699999999998854
No 157
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=53.57 E-value=5.1 Score=36.59 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=13.1
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 158
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=53.47 E-value=6.9 Score=47.64 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=26.9
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-.......++ .+.|-||+-.|.+|||||.|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 36666544444444 589999999999999999885
No 159
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.71 E-value=7.5 Score=44.30 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=20.6
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..|..+++|.| +++.++||||||.+
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHH
Confidence 45667788988 67888999999986
No 160
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=52.58 E-value=9.8 Score=46.29 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHC-----CCCeEEEeeccCCCCCceEecC
Q 004272 455 SDMQPLIRSVLD-----GYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 455 ~~v~plV~svl~-----G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..|..++.++.. |.+..++.. +||||||+||..
T Consensus 245 ~av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 245 RAVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 446777777766 445555444 999999999964
No 161
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.57 E-value=10 Score=42.54 Aligned_cols=46 Identities=30% Similarity=0.530 Sum_probs=30.9
Q ss_pred EEEeeccCCCCCceEe--------------cCCCCCCcccccchHHHHHHHHHHHhhhccc
Q 004272 471 CIFAYGQTGSGKTYTM--------------TGPRELTEKSQGVNYRALSDLFLIAEQRKDI 517 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm--------------~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~ 517 (764)
-|+-||++|+|||-.- .|+. .-..--|==+|.+++||..+..+...
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE-lVqKYiGEGaRlVRelF~lArekaPs 246 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE-LVQKYIGEGARLVRELFELAREKAPS 246 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH-HHHHHhccchHHHHHHHHHHhhcCCe
Confidence 4899999999998532 2210 00112244589999999999887764
No 162
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=51.82 E-value=9.8 Score=43.78 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=19.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..+++|.| ++..++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 45667789998 56677999999975
No 163
>PRK09183 transposase/IS protein; Provisional
Probab=51.77 E-value=8.3 Score=41.18 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=16.6
Q ss_pred CCCCeEEEeeccCCCCCceEecC
Q 004272 466 DGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.|.| ++-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4665 45689999999998865
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=51.49 E-value=9.3 Score=44.20 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=19.8
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..++..+..|.|..+ ||++|+|||+..
T Consensus 185 e~l~~~L~~~~~iil--~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKKNIIL--QGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCCCEEE--ECCCCCCHHHHH
Confidence 445555556776654 999999999875
No 165
>PHA00729 NTP-binding motif containing protein
Probab=51.42 E-value=11 Score=39.57 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.+++.+..|--..|+.+|.+|+||||....
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 345555544445799999999999987643
No 166
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=51.11 E-value=11 Score=46.07 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=18.0
Q ss_pred CCCCeEEecCCHHHHHHHHHhhhhc
Q 004272 559 VPDASLIPVSSTADVINLMNLGQKN 583 (764)
Q Consensus 559 v~~lt~v~V~s~~e~~~ll~~g~~~ 583 (764)
-+|...|.|+--.|+.+|...-.+.
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhh
Confidence 4567778888888888887765443
No 167
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=51.02 E-value=7.9 Score=44.07 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.|+. +-++||||||.+.
T Consensus 37 ~aip~il~g~dvi--~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDVA--GQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcEE--EECCCCchHHHHH
Confidence 4566788999864 4569999999753
No 168
>PRK13764 ATPase; Provisional
Probab=51.00 E-value=6.8 Score=46.90 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.4
Q ss_pred CeEEEeeccCCCCCceEecC
Q 004272 469 NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G 488 (764)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34488999999999999843
No 169
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.79 E-value=18 Score=41.23 Aligned_cols=44 Identities=34% Similarity=0.479 Sum_probs=27.8
Q ss_pred EEEeeccCCCCCce--------------EecCCCCCCcccccchHHHHHHHHHHHhhhcc
Q 004272 471 CIFAYGQTGSGKTY--------------TMTGPRELTEKSQGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 471 ~IfaYGqTGSGKTy--------------Tm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~ 516 (764)
-|+-||++|+|||- .|.|.+...-...|+ -.++.||+.....+.
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV--TkiH~lFDWakkS~r 443 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV--TKIHKLFDWAKKSRR 443 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH--HHHHHHHHHHhhccc
Confidence 37899999999983 244433222223333 368899998765443
No 170
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=50.39 E-value=7.8 Score=41.73 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.4
Q ss_pred CCCCeEEEeeccCCCCCceEe
Q 004272 466 DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm 486 (764)
.|...-++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 354445788999999999877
No 171
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=50.18 E-value=9.2 Score=44.12 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|..+++|.| +++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677889998 567779999999863
No 172
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=50.11 E-value=6.4 Score=39.99 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=15.3
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
.....+|..||.|||||+++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 45578999999999998876
No 173
>PRK10536 hypothetical protein; Provisional
Probab=49.01 E-value=8.2 Score=41.48 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=27.1
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.|.|..|-+-+..|..... .+.+ +-.++..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 3555555555555554433 2333 3488999999999999864
No 174
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=48.63 E-value=11 Score=46.34 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=24.4
Q ss_pred ChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 449 TQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.|+.+-.....+.+.+-.+.-..++-||++|+|||++...
T Consensus 32 GQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 32 GQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred CcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 3444443323333333345555778899999999988743
No 175
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=48.59 E-value=6.7 Score=39.26 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999865
No 176
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=48.42 E-value=16 Score=41.06 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=40.9
Q ss_pred eEEE-cc-eecCCCCChHhHHhhhHHHHHHHHCC---CCeEEEeeccCCCCCceE---------------------ecC-
Q 004272 436 KSFS-FN-KVYGPSATQAEVFSDMQPLIRSVLDG---YNVCIFAYGQTGSGKTYT---------------------MTG- 488 (764)
Q Consensus 436 ~~F~-FD-~VF~~~atQ~eVf~~v~plV~svl~G---~N~~IfaYGqTGSGKTyT---------------------m~G- 488 (764)
+.|. |+ .||+. ++.-..+-..+.+...| .+-.+.-.|++|||||+. +.|
T Consensus 44 ~~y~~F~~~~~G~----~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 44 KRYRFFDHDFFGM----EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred eeccccchhccCc----HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 4454 45 67774 44444433344444444 456788899999999853 333
Q ss_pred ---CCCCCcccccchHHHHHHHHH
Q 004272 489 ---PRELTEKSQGVNYRALSDLFL 509 (764)
Q Consensus 489 ---~~~~~~~~~GIi~ral~~LF~ 509 (764)
.+ ..+.-.|++|...++.|.
T Consensus 120 ~~~sp-~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 120 GEESP-MHEDPLHLFPDELREDLE 142 (361)
T ss_pred CCCCC-CccCCcccCCHHHHHHHH
Confidence 11 123345888888887773
No 177
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=48.34 E-value=18 Score=41.81 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=17.2
Q ss_pred CCeEEEeeccCCCCCceEecC
Q 004272 468 YNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G 488 (764)
....|+-+|.+|+|||+|...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 356788899999999999843
No 178
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=48.24 E-value=1.6e+02 Score=28.47 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHhhhhhhhh----hHHHHh
Q 004272 315 KSQSLKQKMIFDQQHEDIQELKHTLHTTKAG------------------IQFMQMKFHEEFSNLGIHIHG----LAHAAS 372 (764)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 372 (764)
+..-+.|.+..++++++|.-|+..+..++.. +..+-+++.++=..|...+++ +...+.
T Consensus 7 ktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsK 86 (129)
T PF15372_consen 7 KTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQESK 86 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777777777777777777654321 111222233333344444444 445778
Q ss_pred hhhHHHHHHhhhhhhhhccCCCEEEEEEe
Q 004272 373 GYHRVLEENRKLYNQVQDLKGSIRVYCRV 401 (764)
Q Consensus 373 ~~~~~~~e~r~l~n~~~~lkg~IrV~~RV 401 (764)
.||+.-.+||....++....+...|.-|.
T Consensus 87 Ayhk~ndeRr~ylaEi~~~s~~~~~~k~q 115 (129)
T PF15372_consen 87 AYHKANDERRQYLAEISQTSALHQVSKRQ 115 (129)
T ss_pred HHHHHhHHHHHHHHHHHhhhhhHhhhccc
Confidence 99999999999999998888766665444
No 179
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=48.19 E-value=9.9 Score=41.20 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=18.3
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
.-+.+|.-||+-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56889999999999999987
No 180
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=47.96 E-value=15 Score=44.82 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.6
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 46766555555555 599999999999999999886
No 181
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.93 E-value=65 Score=33.51 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 004272 320 KQKMIFDQQHEDIQELKHTLHTTKA 344 (764)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (764)
+.+..+...+.++.++...+.+.++
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~ 121 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTA 121 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333334444444444444333333
No 182
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=47.60 E-value=17 Score=40.60 Aligned_cols=29 Identities=34% Similarity=0.663 Sum_probs=22.1
Q ss_pred HHHHHHHCCC---CeEEEeeccCCCCCceEecC
Q 004272 459 PLIRSVLDGY---NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 459 plV~svl~G~---N~~IfaYGqTGSGKTyTm~G 488 (764)
|.+...+.|. --+||+ |+||||||+-|.-
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFlsE 292 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLSE 292 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEehH
Confidence 5677777776 456665 9999999998854
No 183
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=47.52 E-value=7.3 Score=36.75 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=13.4
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999876
No 184
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.32 E-value=19 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=19.2
Q ss_pred CcccccchHHHHHHHHHHHhhhcc
Q 004272 493 TEKSQGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 493 ~~~~~GIi~ral~~LF~~~~~~~~ 516 (764)
..++-|++.|.+.+|...+....+
T Consensus 783 sGDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 783 SGDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCCccccHHHHHHHHHHHhhcccC
Confidence 456779999999999988876553
No 185
>PHA00276 phage lambda Rz-like lysis protein
Probab=47.20 E-value=50 Score=32.33 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHhhhhhhhhcc-CCCEEEEEEeCCCCC
Q 004272 342 TKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDL-KGSIRVYCRVRPFLS 406 (764)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~r~l~n~~~~l-kg~IrV~~RVRP~~~ 406 (764)
+.+.+-.|..+|++++...+.....+. .++ .|++|+-+|++|...
T Consensus 50 ~QqaVaal~~~yqkEladaK~~~DrLi--------------------adlRsGn~RLqvr~~a~s~ 95 (144)
T PHA00276 50 TQAAINAVSKEYQEDLAALEGSTDRVI--------------------ADLRSDNKRLRVRLKPTSG 95 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH--------------------HHHHcCCceEEeeeecccc
Confidence 355566677777777665544332221 122 499999999999743
No 186
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.13 E-value=14 Score=42.39 Aligned_cols=18 Identities=44% Similarity=0.530 Sum_probs=15.8
Q ss_pred eEEEeeccCCCCCceEec
Q 004272 470 VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~ 487 (764)
..|.-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578889999999999983
No 187
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=46.99 E-value=13 Score=44.94 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=22.2
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.++..+..++...++-||++|+|||+..
T Consensus 165 ~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 165 ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 3455566678878888999999999865
No 188
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=46.78 E-value=14 Score=44.94 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=27.6
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-......+++ .|.|-||+.-|.+|||||.+.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 36665555555555 599999999999999999886
No 189
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=46.77 E-value=16 Score=40.33 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=15.4
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
...|.-.|++|+|||+|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3466677999999999983
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=46.45 E-value=7.5 Score=41.81 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=28.7
Q ss_pred eEEEeeccCCCCCceEecCCCC-------------CCcccccchHHHHHHHHHHHhhhcc
Q 004272 470 VCIFAYGQTGSGKTYTMTGPRE-------------LTEKSQGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~G~~~-------------~~~~~~GIi~ral~~LF~~~~~~~~ 516 (764)
-.|+-||++|+|||++--.-.+ .-.+.-|=-.|-++.||....+...
T Consensus 152 knVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aP 211 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAP 211 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 3467899999999976422110 0112335556778888887765443
No 191
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=46.12 E-value=15 Score=44.88 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=26.7
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 46665544444444 689999999999999999986
No 192
>PRK14974 cell division protein FtsY; Provisional
Probab=45.56 E-value=18 Score=40.40 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=17.5
Q ss_pred CCCeEEEeeccCCCCCceEec
Q 004272 467 GYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+....|.-.|++|+|||+|+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHH
Confidence 345788899999999999983
No 193
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=45.55 E-value=17 Score=44.54 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=26.2
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 36665444444443 589999999999999999886
No 194
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=45.54 E-value=18 Score=44.15 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=26.5
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.........++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 36665444444444 589999999999999999986
No 195
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.42 E-value=7.8 Score=43.80 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=15.7
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
...+.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3466679999999999984
No 196
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=45.14 E-value=42 Score=41.65 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=21.9
Q ss_pred ChHhHHhhhHHHHHH-HHCC--CCeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRS-VLDG--YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~s-vl~G--~N~~IfaYGqTGSGKTyTm 486 (764)
.|+++-+.+...+.. .+.| ..-.++-||++|+|||++.
T Consensus 324 G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 324 GLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred ChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHH
Confidence 355665555433321 1211 2225777999999999765
No 197
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=45.10 E-value=17 Score=44.26 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=25.9
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 71 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 71 VFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 6655444444444 589999999999999999986
No 198
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=45.06 E-value=18 Score=44.14 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=26.9
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-.....+.++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 36665544444444 589999999999999999986
No 199
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.89 E-value=9.3 Score=42.20 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=13.2
Q ss_pred eEEEeeccCCCCCceE
Q 004272 470 VCIFAYGQTGSGKTYT 485 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyT 485 (764)
+-|+..|+||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 3578899999999963
No 200
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=44.72 E-value=8.4 Score=43.15 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=32.6
Q ss_pred ceEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 435 WKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 435 ~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
...|.|+.|-+. +++ ..-|+..+.+-.-+-|+-+|.+|||||+++-+
T Consensus 11 ~~~~pf~~ivGq----~~~---k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 11 RPVFPFTAIVGQ----EEM---KLALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCCHHHHhCh----HHH---HHHHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 447889888774 222 24555566554445688999999999998844
No 201
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=44.49 E-value=13 Score=42.24 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=27.0
Q ss_pred ChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 449 TQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
.|+.+...-.|+=+-+-.|.-...+-||+.|+|||..
T Consensus 28 GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4666665545554555567778889999999999974
No 202
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.42 E-value=14 Score=42.93 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=20.8
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
...|..++.|.++ ++..+||||||.+.
T Consensus 17 ~~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 17 LEVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 3467778899985 45569999999764
No 203
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.21 E-value=12 Score=40.48 Aligned_cols=28 Identities=39% Similarity=0.659 Sum_probs=24.0
Q ss_pred HHH-HHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLI-RSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV-~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.|| .++-+|+.--|++.|.||.|||+.|
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 456 4677899999999999999999876
No 204
>PRK06696 uridine kinase; Validated
Probab=44.10 E-value=21 Score=36.96 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=22.5
Q ss_pred HHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.+++...|.+.-.+....|.--|.+|||||+.-
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 3444433333333566778888999999999865
No 205
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=44.10 E-value=12 Score=45.20 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=19.4
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.|..++.... .++-.|++|||||||+..
T Consensus 165 Av~~~l~~~~-~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 165 AVSFALSSKD-LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHHhcCCC-eEEEEcCCCCCHHHHHHH
Confidence 3444554333 356899999999999854
No 206
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=44.09 E-value=11 Score=48.65 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..+++.+-+|...+++. .+||||||+||.+
T Consensus 423 ~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 34455555676654444 8999999999865
No 207
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=44.03 E-value=14 Score=44.02 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=21.2
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+|..+++|.|+. +..+||+|||.+.
T Consensus 19 ~~~i~~il~g~dvl--v~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDVL--VVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCEE--EEcCCCccHhHHH
Confidence 45677889999864 4459999999874
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=43.95 E-value=16 Score=42.05 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.8
Q ss_pred EEEeeccCCCCCceEecC
Q 004272 471 CIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G 488 (764)
+|+-.|+||+|||+|+..
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566669999999999843
No 209
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=43.60 E-value=20 Score=43.81 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=27.2
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-.....+.++ .|.|-||+.-|.+|||||.|.
T Consensus 69 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 36665544455544 699999999999999999986
No 210
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=43.22 E-value=19 Score=38.78 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=14.9
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
..+|.-.|++|+|||+|..
T Consensus 72 ~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3455556999999999984
No 211
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.93 E-value=61 Score=35.54 Aligned_cols=103 Identities=17% Similarity=0.319 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
-+.|+..|+.+++.. ... -.+-|..|..-|.++.-+.||.|+ ||.=.. ...+.+.-|
T Consensus 16 sR~E~laW~N~~l~~------n~~-----kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A----------~~Ehe~i~N 74 (295)
T KOG3000|consen 16 SRLEILAWINDLLQL------NLT-----KIEELCTGAAYCQLMDMLFPPDIPLKKVKFAA----------RLEHEYIPN 74 (295)
T ss_pred chHHHHHHHHhhhhc------chh-----hhhhhcccchhhhhhhhccCCccccccccccc----------cccchhhhh
Confidence 356889999999752 111 345678899999999999999996 553221 135667778
Q ss_pred HHHHHHHHHhcCCC-CccCCccccCCChhHHHHHHHHHHhcccccccC
Q 004272 120 VRNFLVAVQEMGLP-TFEASDLEQGGKSARVVNCVLALKSYGEWKQTG 166 (764)
Q Consensus 120 I~~FL~ac~~lGvp-~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g 166 (764)
-..+-.+-..+|+. .....+|..|+= .-=+.=+..++.+.....+|
T Consensus 75 fk~lQ~~f~klgi~k~v~vdkLvKg~~-qDNlEF~qWfkkffd~~~~g 121 (295)
T KOG3000|consen 75 FKVLQTCFNKLGIDKVVDVDKLVKGPF-QDNLEFLQWFKKFFDANYGG 121 (295)
T ss_pred hHHHHHHHHhcCCcccccHHHHhcccc-cchHHHHHHHHHHhhccCCc
Confidence 88877777999998 588888887752 23455677788887777766
No 212
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=42.86 E-value=17 Score=38.82 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.++..+..|.+++ -+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~vL--L~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVH--LRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEE--EEcCCCCCHHHHH
Confidence 34445555677665 4899999999765
No 213
>PF05729 NACHT: NACHT domain
Probab=42.50 E-value=9.6 Score=36.31 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=14.4
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36789999999999883
No 214
>PRK10865 protein disaggregation chaperone; Provisional
Probab=42.32 E-value=17 Score=45.61 Aligned_cols=45 Identities=29% Similarity=0.333 Sum_probs=29.3
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCC------eEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N------~~IfaYGqTGSGKTyTm 486 (764)
.-+.+|++ |...-..+...|..+..|.. +.++-+|+||+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 34556665 45555555555555544432 57788899999999976
No 215
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.28 E-value=5.9e+02 Score=29.35 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=14.5
Q ss_pred hhhhhhhccCCCEEEEEEeCC
Q 004272 383 KLYNQVQDLKGSIRVYCRVRP 403 (764)
Q Consensus 383 ~l~n~~~~lkg~IrV~~RVRP 403 (764)
+.||+..+.-+.+-|..---|
T Consensus 328 ry~Ne~~~~g~s~~Va~~asa 348 (552)
T KOG2129|consen 328 RYLNEFVDFGDSVEVALHASA 348 (552)
T ss_pred HHHhhhhccCCceeeecccch
Confidence 478888888887777644333
No 216
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=42.27 E-value=19 Score=43.94 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=26.3
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 69 ifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 69 IFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 6665444444444 699999999999999999886
No 217
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=41.74 E-value=18 Score=44.13 Aligned_cols=43 Identities=33% Similarity=0.495 Sum_probs=30.0
Q ss_pred ceecCCCCChHhHHhh---h----HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 441 NKVYGPSATQAEVFSD---M----QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 441 D~VF~~~atQ~eVf~~---v----~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
++-+++++-|..+|-. + ..+++.+| |.|+.|-+ |||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 3444555555555542 1 35888999 99997766 9999999863
No 218
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=41.73 E-value=20 Score=43.88 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=26.9
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-......+++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 73 HIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 46665444444444 599999999999999999875
No 219
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=41.63 E-value=17 Score=43.11 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=26.8
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
-+|+.+++.+ .. ++.+...+..+....|+-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs----~~---i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQE----EG---IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcH----HH---HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3466666543 22 333334455666677888999999997654
No 220
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=41.62 E-value=9.1 Score=43.15 Aligned_cols=17 Identities=41% Similarity=0.896 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-||.+||||||++
T Consensus 31 S~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV 47 (438)
T ss_pred eeEEEeccCCCchhHHH
Confidence 34689999999999987
No 221
>PHA02244 ATPase-like protein
Probab=41.55 E-value=21 Score=40.38 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=17.0
Q ss_pred HHHHCCCCeEEEeeccCCCCCceEec
Q 004272 462 RSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 462 ~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..+-.|.+++| +|+||+|||+...
T Consensus 114 r~l~~~~PVLL--~GppGtGKTtLA~ 137 (383)
T PHA02244 114 KIVNANIPVFL--KGGAGSGKNHIAE 137 (383)
T ss_pred HHHhcCCCEEE--ECCCCCCHHHHHH
Confidence 33335666554 8999999998763
No 222
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.49 E-value=1.2e+02 Score=31.83 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=15.0
Q ss_pred HHHHhhhhHHHHHHhhhhhhhh
Q 004272 368 AHAASGYHRVLEENRKLYNQVQ 389 (764)
Q Consensus 368 ~~~~~~~~~~~~e~r~l~n~~~ 389 (764)
+.....|-+.++++.+|-++++
T Consensus 189 e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 189 EGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHcccHHHHHHHHHHHHHHHHh
Confidence 3345567777778777777765
No 223
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=41.22 E-value=20 Score=44.04 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.....+.++ .|.|-||+.-|.+|||||.|.
T Consensus 74 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 6665444444444 689999999999999999986
No 224
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=41.17 E-value=16 Score=39.78 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=24.6
Q ss_pred CCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 446 PSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 446 ~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
|...|.++-+.| .+.+-.|.++ +.-.+||+|||.+..-
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~~--~~eapTGtGKTl~~L~ 46 (289)
T smart00488 9 PYPIQYEFMEEL---KRVLDRGKIG--ILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCcE--EEECCCCcchhHHHHH
Confidence 455665555544 3444567654 5567999999988754
No 225
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=41.17 E-value=16 Score=39.78 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=24.6
Q ss_pred CCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 446 PSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 446 ~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
|...|.++-+.| .+.+-.|.++ +.-.+||+|||.+..-
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~~--~~eapTGtGKTl~~L~ 46 (289)
T smart00489 9 PYPIQYEFMEEL---KRVLDRGKIG--ILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCcE--EEECCCCcchhHHHHH
Confidence 455665555544 3444567654 5567999999988754
No 226
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.81 E-value=1.4e+02 Score=24.64 Aligned_cols=38 Identities=3% Similarity=0.149 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004272 316 SQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKF 353 (764)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 353 (764)
.++.+....++.+++++++++..++.++..++.+-.-|
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666665555554444333
No 227
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=40.81 E-value=11 Score=39.63 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.1
Q ss_pred CeEEEeeccCCCCCceEecC
Q 004272 469 NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G 488 (764)
...++-||++|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999998855
No 228
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=40.79 E-value=15 Score=42.84 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=40.2
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHH-HHHC--C--CCeEEEeeccCCCCCceEecCC------CCC--C-----ccccc
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTMTGP------REL--T-----EKSQG 498 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~-svl~--G--~N~~IfaYGqTGSGKTyTm~G~------~~~--~-----~~~~G 498 (764)
..+||.|.+.+...+++.+.+..+-. ..+. | ..-.++-||++|+|||+..-.- +-. + ....|
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g 130 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 130 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhc
Confidence 46788777655444443332222110 0111 2 2235888999999999886321 000 0 11124
Q ss_pred chHHHHHHHHHHHhhh
Q 004272 499 VNYRALSDLFLIAEQR 514 (764)
Q Consensus 499 Ii~ral~~LF~~~~~~ 514 (764)
.-...++++|......
T Consensus 131 ~~~~~l~~~f~~a~~~ 146 (495)
T TIGR01241 131 VGASRVRDLFEQAKKN 146 (495)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 4456677888766543
No 229
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=40.76 E-value=15 Score=37.15 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=19.1
Q ss_pred HHHHCCC---CeEEEeeccCCCCCceEe
Q 004272 462 RSVLDGY---NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 462 ~svl~G~---N~~IfaYGqTGSGKTyTm 486 (764)
+.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455554 677889999999998765
No 230
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=40.47 E-value=17 Score=42.00 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 46778899999765 459999999664
No 231
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.47 E-value=13 Score=45.03 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=25.1
Q ss_pred CChHhHHhhhHHHHHHHHCCC--CeEEEeeccCCCCCceEec
Q 004272 448 ATQAEVFSDMQPLIRSVLDGY--NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 448 atQ~eVf~~v~plV~svl~G~--N~~IfaYGqTGSGKTyTm~ 487 (764)
+.|.....++..++..+.-+. .-.++-||++|+|||.++.
T Consensus 87 ~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 87 AVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred cCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 344444445555555544332 2247889999999999874
No 232
>PHA02653 RNA helicase NPH-II; Provisional
Probab=40.40 E-value=21 Score=43.56 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=22.3
Q ss_pred CChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 448 ATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 448 atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
+-|.+|-+. ++..++.|.++ +..|+||||||..
T Consensus 163 ~~~~~iQ~q---il~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLK---IFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHH---HHHHHHhCCCE--EEECCCCCCchhH
Confidence 344444443 44555677765 7889999999976
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=40.35 E-value=9.3 Score=36.06 Aligned_cols=16 Identities=50% Similarity=0.750 Sum_probs=13.4
Q ss_pred EEeeccCCCCCceEec
Q 004272 472 IFAYGQTGSGKTYTMT 487 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~ 487 (764)
++-+|++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4679999999999773
No 234
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.35 E-value=12 Score=40.24 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=20.0
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
-+++..+.. +--++-.|++|||||.++.
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 355555543 5566889999999998874
No 235
>PRK00131 aroK shikimate kinase; Reviewed
Probab=40.10 E-value=13 Score=36.05 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
.+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999874
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=40.03 E-value=18 Score=37.36 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=22.2
Q ss_pred HHHHHHHCC---CCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDG---YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G---~N~~IfaYGqTGSGKTyTm 486 (764)
+-++.++.| ...++.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 446777875 4677889999999999766
No 237
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=39.92 E-value=9.3 Score=32.07 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999776
No 238
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=39.89 E-value=12 Score=36.96 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.0
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+.+|++|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998763
No 239
>PRK04328 hypothetical protein; Provisional
Probab=39.81 E-value=20 Score=37.94 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=21.6
Q ss_pred HHHHHHHCC---CCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDG---YNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G---~N~~IfaYGqTGSGKTyT 485 (764)
+-++.++.| ....++-+|++|||||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 346788876 588899999999999753
No 240
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=39.33 E-value=22 Score=43.88 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=26.5
Q ss_pred hHhHHhhhHHHHHHHHCCC------CeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~------N~~IfaYGqTGSGKTyTm 486 (764)
|++.-+.+...|.....|. .+.++-+|+||+|||++.
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 5555555655666555554 357899999999999876
No 241
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.26 E-value=1.3e+02 Score=32.54 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=6.6
Q ss_pred HHhhhhhhhh
Q 004272 380 ENRKLYNQVQ 389 (764)
Q Consensus 380 e~r~l~n~~~ 389 (764)
.|+||.+-+|
T Consensus 157 QN~KLEsLLq 166 (305)
T PF15290_consen 157 QNKKLESLLQ 166 (305)
T ss_pred hHhHHHHHHH
Confidence 4677766666
No 242
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.04 E-value=16 Score=43.51 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|..+++|.|+ ++..+||||||.+.
T Consensus 38 ~~ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 456778899995 45779999999764
No 243
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=38.88 E-value=18 Score=44.99 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.4
Q ss_pred HHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.....+++.+-++.+ |+..|+||||||..+
T Consensus 6 i~~~~~~i~~~l~~~~~--vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAVLPELLTALKTAPQ--VLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHHHHHhCCC--EEEEcCCCCCHHHHH
Confidence 55555667777666554 566899999999876
No 244
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=38.75 E-value=23 Score=40.85 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=31.2
Q ss_pred hhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhh
Q 004272 456 DMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQ 513 (764)
Q Consensus 456 ~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~ 513 (764)
.+..++.-+=.++|.++ .|++|+||||.-.+-.....-..| -+-.+..||..+..
T Consensus 198 ~L~rl~~fve~~~Nli~--lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 198 LLARLLPLVEPNYNLIE--LGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred HHHhhHHHHhcCCcEEE--ECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 34444455557788754 699999999887652110001124 23345667766554
No 245
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=38.62 E-value=14 Score=40.59 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=23.8
Q ss_pred EEEeeccCCCCCceEecC--------CCCCC----cccccchHHHHHHHHH
Q 004272 471 CIFAYGQTGSGKTYTMTG--------PRELT----EKSQGVNYRALSDLFL 509 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G--------~~~~~----~~~~GIi~ral~~LF~ 509 (764)
....||+|||||++.+-. |...+ ..+.|+||---...+.
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~ 139 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWE 139 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHH
Confidence 345699999999987642 21111 2346888765444443
No 246
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.33 E-value=23 Score=40.73 Aligned_cols=19 Identities=42% Similarity=0.667 Sum_probs=15.5
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
...|+..|++|+|||+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457778999999999983
No 247
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.26 E-value=24 Score=43.43 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=15.8
Q ss_pred eEEEeeccCCCCCceEec
Q 004272 470 VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~ 487 (764)
.+|.-.|+||+|||+|+-
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 578889999999999983
No 248
>PF13173 AAA_14: AAA domain
Probab=37.77 E-value=12 Score=35.18 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=14.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999988
No 249
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=37.68 E-value=13 Score=35.42 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|.+|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998764
No 250
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=37.66 E-value=22 Score=42.70 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|..++.|.++.+. ++||||||.+.
T Consensus 32 ~ai~~il~g~dvlv~--apTGsGKTl~y 57 (607)
T PRK11057 32 EIIDAVLSGRDCLVV--MPTGGGKSLCY 57 (607)
T ss_pred HHHHHHHcCCCEEEE--cCCCchHHHHH
Confidence 456677899987654 69999999753
No 251
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=37.55 E-value=22 Score=40.58 Aligned_cols=21 Identities=14% Similarity=0.157 Sum_probs=17.0
Q ss_pred CCCCeEEecCCHHHHHHHHHh
Q 004272 559 VPDASLIPVSSTADVINLMNL 579 (764)
Q Consensus 559 v~~lt~v~V~s~~e~~~ll~~ 579 (764)
+-|+....|.++.|+...+..
T Consensus 258 im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 258 IMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred HhCCceEEecCHHHHHHHHHH
Confidence 567788889999999887763
No 252
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=37.47 E-value=12 Score=40.69 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=17.8
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
|++-+|+..|++|+|||.-+
T Consensus 2 g~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 2 GFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp EEEEEEEEEECTTSSHHHHH
T ss_pred CceEEEEEECCCCCCHHHHH
Confidence 78889999999999998754
No 253
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=37.43 E-value=12 Score=40.35 Aligned_cols=29 Identities=38% Similarity=0.690 Sum_probs=19.7
Q ss_pred CCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccC
Q 004272 686 GQAKTLMFVHISPEPDAVGETISTLKFAERVATVELG 722 (764)
Q Consensus 686 Gnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g 722 (764)
.-.+|++||+ .+.+|. ++.|+|+.-..-|
T Consensus 184 ~l~kTivfVT-----HDidEA---~kLadri~vm~~G 212 (309)
T COG1125 184 ELGKTIVFVT-----HDIDEA---LKLADRIAVMDAG 212 (309)
T ss_pred HhCCEEEEEe-----cCHHHH---HhhhceEEEecCC
Confidence 4568888887 466654 6788887665544
No 254
>PRK07261 topology modulation protein; Provisional
Probab=37.42 E-value=14 Score=36.77 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998765
No 255
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=37.34 E-value=25 Score=41.87 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=17.5
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
|.-++.-. ....-.|++|+|||||+
T Consensus 194 v~~~~~~k-~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 194 VSFAINNK-DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred HHHHhccC-CceEeeCCCCCCceeeH
Confidence 33333333 44567899999999998
No 256
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=37.10 E-value=12 Score=36.82 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
...+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999887
No 257
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=36.86 E-value=23 Score=36.71 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHHHHHHCCC---CeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGY---NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~---N~~IfaYGqTGSGKTyTm 486 (764)
+-++.++.|- ..++..+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 4467777643 677888899999998755
No 258
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.58 E-value=23 Score=42.86 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=20.3
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|..++.|.+ +++.+|||||||.+.
T Consensus 35 ~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 35 ECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 35666788987 567779999999874
No 259
>PRK08118 topology modulation protein; Reviewed
Probab=36.58 E-value=15 Score=36.53 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=12.0
Q ss_pred EEeeccCCCCCceE
Q 004272 472 IFAYGQTGSGKTYT 485 (764)
Q Consensus 472 IfaYGqTGSGKTyT 485 (764)
|+-.|++|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999953
No 260
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=36.52 E-value=28 Score=40.94 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..++.|.|+ ++..+||||||.+
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTla 174 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTAS 174 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHH
Confidence 456778899985 5667999999965
No 261
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=36.25 E-value=27 Score=39.70 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=49.2
Q ss_pred eEEEcceecCCCCChHhHHhhh-HHHHHHHHC----CCCeEEEeeccCCCCCceEe------cCCC-------CCCcccc
Q 004272 436 KSFSFNKVYGPSATQAEVFSDM-QPLIRSVLD----GYNVCIFAYGQTGSGKTYTM------TGPR-------ELTEKSQ 497 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~----G~N~~IfaYGqTGSGKTyTm------~G~~-------~~~~~~~ 497 (764)
..+.||.+.+.----..+.+.+ ..+....+. -.---+.-||+.|+|||+.. .|-. +......
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4577777766555545555553 677777764 23345777999999999873 2211 1112234
Q ss_pred cchHHHHHHHHHHHhh
Q 004272 498 GVNYRALSDLFLIAEQ 513 (764)
Q Consensus 498 GIi~ral~~LF~~~~~ 513 (764)
|=-.+.++++|..+..
T Consensus 190 GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 190 GEPGKLIRQRYREAAD 205 (413)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5566889999987754
No 262
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=36.17 E-value=20 Score=40.35 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.1
Q ss_pred EEeeccCCCCCceEecCC
Q 004272 472 IFAYGQTGSGKTYTMTGP 489 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~G~ 489 (764)
++.+|+||||||+++.=|
T Consensus 2 ~lv~g~tGsGKt~~~viP 19 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIP 19 (384)
T ss_pred eeEecCCCCCCccEEEcc
Confidence 578999999999998643
No 263
>PHA01747 putative ATP-dependent protease
Probab=35.81 E-value=15 Score=41.45 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=27.2
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+-|+|++-..+.|.-++=.|+.||||||+..
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~ 208 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFV 208 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHH
Confidence 5688887778889999999999999999874
No 264
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.74 E-value=26 Score=37.89 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.||+ ..+.--+..+-.||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 4555 566777889999999999999876
No 265
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=35.67 E-value=15 Score=36.40 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 266
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=35.66 E-value=27 Score=42.51 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=26.1
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
.||.-.....+.++ .+.|-||+.-|.+|||||.|+
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 36654433444443 589999999999999999987
No 267
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=35.52 E-value=24 Score=42.73 Aligned_cols=38 Identities=32% Similarity=0.682 Sum_probs=28.8
Q ss_pred HhHHhhhHHHHHHHH--CCCCeEEEeeccCCCCCceEecC
Q 004272 451 AEVFSDMQPLIRSVL--DGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 451 ~eVf~~v~plV~svl--~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+.-|.+|...++.++ +|--+|+.--|..|||||.|+.+
T Consensus 402 e~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 402 ENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred hHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHH
Confidence 344555666666666 47777999999999999999854
No 268
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.45 E-value=13 Score=43.40 Aligned_cols=18 Identities=39% Similarity=0.398 Sum_probs=15.6
Q ss_pred eEEEeeccCCCCCceEec
Q 004272 470 VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~ 487 (764)
..|.-.|+||+|||+|+-
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467888999999999983
No 269
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=34.99 E-value=27 Score=38.41 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=23.0
Q ss_pred ChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
.|+.+.+.+.. .+-.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l~~---~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLKN---AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHHH---HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 45555554433 333454 446789999999999776
No 270
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=34.71 E-value=27 Score=42.99 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=25.0
Q ss_pred hHhHHhhhHHHHHHHHCCC------CeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~------N~~IfaYGqTGSGKTyTm 486 (764)
|+++-+.+...+.....|. .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 5555555555555544444 246788999999999776
No 271
>PRK10867 signal recognition particle protein; Provisional
Probab=34.24 E-value=36 Score=39.30 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=15.9
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
...|+..|.+|||||+|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4678888999999999873
No 272
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.05 E-value=2.8e+02 Score=30.04 Aligned_cols=47 Identities=30% Similarity=0.545 Sum_probs=27.4
Q ss_pred CeEEEeeccCCCCCceEe--------------cCCCCCCcccccchHHHHHHHHHHHhhhcc
Q 004272 469 NVCIFAYGQTGSGKTYTM--------------TGPRELTEKSQGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm--------------~G~~~~~~~~~GIi~ral~~LF~~~~~~~~ 516 (764)
.--++.||+.|+|||... .|.. .-..--|==.|.+++||-...+...
T Consensus 181 PKGvlLygppgtGktLlaraVahht~c~firvsgse-lvqk~igegsrmvrelfvmarehap 241 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE-LVQKYIGEGSRMVRELFVMAREHAP 241 (404)
T ss_pred CcceEEecCCCCchhHHHHHHHhhcceEEEEechHH-HHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 445889999999998532 1110 0011123345777888876665544
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=33.86 E-value=32 Score=35.38 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=22.1
Q ss_pred HHHHHHHCCC---CeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGY---NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~---N~~IfaYGqTGSGKTyTm~ 487 (764)
|-++.++.|- ...+.-+|++|||||....
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4567788544 5577899999999987763
No 274
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=33.73 E-value=17 Score=39.28 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.9
Q ss_pred CCCCeEEEeeccCCCCCceEe
Q 004272 466 DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm 486 (764)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999999765
No 275
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=33.66 E-value=27 Score=38.31 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHCCCCeEEEeeccCCCCCceEecC
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
--...+..++-||+.|||||.||.-
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHHH
Confidence 3356788899999999999999843
No 276
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.50 E-value=1.9e+02 Score=30.91 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.0
Q ss_pred HHHHHHHHhhhHHhhhccccc
Q 004272 255 VEEFEHRIASQYEQMKTAPYH 275 (764)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~ 275 (764)
..|||.-|.+|..++++++++
T Consensus 43 SrE~EaelesqL~q~etrnrd 63 (333)
T KOG1853|consen 43 SREIEAELESQLDQLETRNRD 63 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888775
No 277
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.49 E-value=23 Score=41.70 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=26.3
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
+||.|. .|+.+.+.+...+.+ |. ...++-||+.|+|||.+.
T Consensus 12 ~~~dvv----Gq~~v~~~L~~~i~~---~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVV----GQEHVKEVLLAALRQ---GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhc----ChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHH
Confidence 355554 466665555544443 33 345689999999999776
No 278
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=33.49 E-value=31 Score=42.71 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=26.6
Q ss_pred hHHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
-||.-......+++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 36665444444444 599999999999999999886
No 279
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=33.39 E-value=30 Score=42.18 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 445 ~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+...|..+..++ ..+.-.++..-++..|+||||||.+..
T Consensus 261 ~lt~~Q~~ai~~I---~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 261 ELTGAQKRVVAEI---LADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCHHHHHHHHHH---HHhhhccCCceEEEECCCCCcHHHHHH
Confidence 4666777766654 233334555678899999999998654
No 280
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=33.30 E-value=15 Score=35.76 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.1
Q ss_pred EEeeccCCCCCceE
Q 004272 472 IFAYGQTGSGKTYT 485 (764)
Q Consensus 472 IfaYGqTGSGKTyT 485 (764)
|+-.|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 281
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=33.30 E-value=15 Score=36.28 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|++|||||+++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999887
No 282
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=33.23 E-value=30 Score=38.61 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.1
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
++.+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 45567788877888899999999874
No 283
>CHL00176 ftsH cell division protein; Validated
Probab=33.11 E-value=29 Score=42.10 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=27.9
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCC---------CCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDG---------YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G---------~N~~IfaYGqTGSGKTyTm 486 (764)
.++||.|.+.+.. -+++..++..+-+. ..--|+-||++|+|||+..
T Consensus 179 ~~~f~dv~G~~~~----k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 179 GITFRDIAGIEEA----KEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCHHhccChHHH----HHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 4677777765433 33344444332221 1235889999999999875
No 284
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=33.01 E-value=35 Score=36.03 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=24.1
Q ss_pred hHHHHHHHHC--CCCeEEEeeccCCCCCceEe
Q 004272 457 MQPLIRSVLD--GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 457 v~plV~svl~--G~N~~IfaYGqTGSGKTyTm 486 (764)
+..+.+.+.+ .....|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 5566677776 67888999999999998765
No 285
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=32.94 E-value=28 Score=42.91 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+++|.|+.+.| +||||||...
T Consensus 43 ~ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 4566788999977655 8999999864
No 286
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=32.90 E-value=35 Score=42.86 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=24.8
Q ss_pred hHhHHhhhHHHHHHHHCCCC------eEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~N------~~IfaYGqTGSGKTyTm 486 (764)
|++.-+.|...|..+..|.+ +.++-+|+||+|||++.
T Consensus 571 Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 571 QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 44444555555555545543 46888999999999875
No 287
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=32.75 E-value=15 Score=41.93 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
-++.+|+||||||..|
T Consensus 44 h~~i~g~tGsGKt~~i 59 (410)
T cd01127 44 HTMIIGTTGTGKTTQI 59 (410)
T ss_pred cEEEEcCCCCCHHHHH
Confidence 4688999999999866
No 288
>CHL00181 cbbX CbbX; Provisional
Probab=32.60 E-value=18 Score=39.36 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=13.0
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-||++|+|||+.-
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 566999999999876
No 289
>PRK14531 adenylate kinase; Provisional
Probab=32.56 E-value=19 Score=36.06 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
-|+.+|++|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998763
No 290
>PHA02624 large T antigen; Provisional
Probab=32.26 E-value=33 Score=41.26 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=23.5
Q ss_pred hHHHHHHHHCCCCe--EEEeeccCCCCCceEec
Q 004272 457 MQPLIRSVLDGYNV--CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 457 v~plV~svl~G~N~--~IfaYGqTGSGKTyTm~ 487 (764)
+..+++.++.|..- ||+-||+.|||||+-..
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~ 449 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAA 449 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 34456667777655 99999999999997653
No 291
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=32.13 E-value=21 Score=42.13 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=25.2
Q ss_pred EEeeccCCCCCceEecCCCC--CCcccccchHHHHHHHHHHHhh
Q 004272 472 IFAYGQTGSGKTYTMTGPRE--LTEKSQGVNYRALSDLFLIAEQ 513 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~G~~~--~~~~~~GIi~ral~~LF~~~~~ 513 (764)
||..|+|.|||||--.---. ...---|=.-....++|+....
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 89999999999997532100 0111123344556678876543
No 292
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=32.11 E-value=33 Score=34.99 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred HHHHHHC-CC--CeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLD-GY--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~-G~--N~~IfaYGqTGSGKTyTm 486 (764)
-++.++. |. ...+..+|++|||||...
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 4677775 43 455789999999999875
No 293
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=32.09 E-value=48 Score=28.90 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVIN 86 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N 86 (764)
.-+.++.+||.-+++. -..+....+|.....||--||.+.-
T Consensus 8 Wtk~~V~~WL~~~~~~-----~~~~~~~i~~~~F~MnG~~LC~ms~ 48 (74)
T cd08539 8 WTKYQVWEWLQHLLDT-----NQLDASCIPFQEFDINGEHLCSMSL 48 (74)
T ss_pred CCHHHHHHHHHHHHHH-----cCCCcccccHHHcCCChHHHHccCH
Confidence 3467899999988653 1344555679999999999998754
No 294
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=32.05 E-value=18 Score=34.37 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 3788999999998754
No 295
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=31.96 E-value=23 Score=41.82 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=28.4
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.|+.+++.+..=..+.+ .+..+ ...+..|+-+|.+||||++.-
T Consensus 193 ~~~~~liG~s~~~~~~~~----~~~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVD----QARVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred CccCceEECCHHHHHHHH----HHHHH-hCcCCCEEEECCCCccHHHHH
Confidence 567777765443333333 33333 256778899999999998754
No 296
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=31.96 E-value=20 Score=33.71 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998754
No 297
>PTZ00110 helicase; Provisional
Probab=31.76 E-value=25 Score=41.64 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+..++.|.++. +.++||||||.+.
T Consensus 160 aip~~l~G~dvI--~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDMI--GIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCEE--EEeCCCChHHHHH
Confidence 456688999874 5679999999864
No 298
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=31.74 E-value=33 Score=41.07 Aligned_cols=43 Identities=21% Similarity=0.518 Sum_probs=25.3
Q ss_pred EEE-cceecCCCCChHhHHhhh-HHHHHHH--HCCCCeEEEeeccCCCCCc
Q 004272 437 SFS-FNKVYGPSATQAEVFSDM-QPLIRSV--LDGYNVCIFAYGQTGSGKT 483 (764)
Q Consensus 437 ~F~-FD~VF~~~atQ~eVf~~v-~plV~sv--l~G~N~~IfaYGqTGSGKT 483 (764)
.|. |+.+|+. +++-+.+ ..+...+ +....-.++-.|++|+|||
T Consensus 71 ry~fF~d~yGl----ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 71 RYPAFEEFYGM----EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred cccchhcccCc----HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCch
Confidence 344 5566654 4444442 2222222 2455667888999999999
No 299
>PRK08233 hypothetical protein; Provisional
Probab=31.66 E-value=19 Score=35.24 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=12.7
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999865
No 300
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.64 E-value=20 Score=39.35 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=44.6
Q ss_pred ceecCCCCChHhHHhhh-HHH-HHHHHCCCC---eEEEeeccCCCCCceEe-----------cCCCCC--CcccccchHH
Q 004272 441 NKVYGPSATQAEVFSDM-QPL-IRSVLDGYN---VCIFAYGQTGSGKTYTM-----------TGPREL--TEKSQGVNYR 502 (764)
Q Consensus 441 D~VF~~~atQ~eVf~~v-~pl-V~svl~G~N---~~IfaYGqTGSGKTyTm-----------~G~~~~--~~~~~GIi~r 502 (764)
+-|-+-+..-+.+-+.| -|+ ...+|-|.. ..|+-||+.|+||+|.- |.-... -..=.|=-.+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 34444433333333332 343 245666654 67999999999999843 221110 0011255678
Q ss_pred HHHHHHHHHhhhccc
Q 004272 503 ALSDLFLIAEQRKDI 517 (764)
Q Consensus 503 al~~LF~~~~~~~~~ 517 (764)
.+..||....+.+.+
T Consensus 213 LVknLFemARe~kPS 227 (439)
T KOG0739|consen 213 LVKNLFEMARENKPS 227 (439)
T ss_pred HHHHHHHHHHhcCCc
Confidence 899999988777664
No 301
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.40 E-value=28 Score=39.37 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=20.9
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|..++.|.+|...| +||||||-+.
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 4567789999986555 9999999776
No 302
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=31.34 E-value=32 Score=34.28 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=19.2
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
+...++.+ ..++..|+-+|.+||||+..
T Consensus 11 ~~~~~~~~-a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 11 LREQAKRA-ASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp HHHHHHHH-TTSTS-EEEECSTTSSHHHH
T ss_pred HHHHHHHH-hCCCCCEEEEcCCCCcHHHH
Confidence 33344443 47789999999999999643
No 303
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=31.29 E-value=18 Score=33.62 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.8
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34567899999999876
No 304
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.09 E-value=32 Score=38.51 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=24.7
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
+||.|. .|+.+-+. +...+-.|. .-.++-||+.|+|||++.
T Consensus 14 ~~~~ii----Gq~~~~~~---l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDII----GQKHIVTA---ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhcc----ChHHHHHH---HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 455554 34444433 333333443 456789999999999865
No 305
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.05 E-value=24 Score=38.07 Aligned_cols=46 Identities=30% Similarity=0.508 Sum_probs=29.6
Q ss_pred EEEeeccCCCCCceEecCCCC-------------CCcccccchHHHHHHHHHHHhhhcc
Q 004272 471 CIFAYGQTGSGKTYTMTGPRE-------------LTEKSQGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G~~~-------------~~~~~~GIi~ral~~LF~~~~~~~~ 516 (764)
-|+.||+.|+|||..--.-.+ .-..--|-=.|.+++||.....++.
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkka 271 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKA 271 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccce
Confidence 489999999999965422110 0111234456889999998776543
No 306
>PRK14532 adenylate kinase; Provisional
Probab=30.99 E-value=22 Score=35.38 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCceE
Q 004272 471 CIFAYGQTGSGKTYT 485 (764)
Q Consensus 471 ~IfaYGqTGSGKTyT 485 (764)
.|+-.|++|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999875
No 307
>PRK06217 hypothetical protein; Validated
Probab=30.93 E-value=20 Score=35.81 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999998643
No 308
>PRK13767 ATP-dependent helicase; Provisional
Probab=30.81 E-value=32 Score=43.27 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=19.2
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+..+++|.|+.|. .+||||||.+.
T Consensus 40 Ai~~il~g~nvli~--APTGSGKTlaa 64 (876)
T PRK13767 40 AIPLIHEGKNVLIS--SPTGSGKTLAA 64 (876)
T ss_pred HHHHHHcCCCEEEE--CCCCCcHHHHH
Confidence 45556889997664 59999999863
No 309
>PRK01172 ski2-like helicase; Provisional
Probab=30.46 E-value=32 Score=41.79 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=17.4
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceE
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
+..+.+|.|+ +..++||||||..
T Consensus 31 i~~l~~~~nv--lv~apTGSGKTl~ 53 (674)
T PRK01172 31 IEQLRKGENV--IVSVPTAAGKTLI 53 (674)
T ss_pred HHHHhcCCcE--EEECCCCchHHHH
Confidence 3445778874 6667999999975
No 310
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=30.44 E-value=21 Score=37.93 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=26.2
Q ss_pred cCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 444 YGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 444 F~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
|.++++|....+....+-+. .-....|+..|.||+|||.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 8 FFPDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCcHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 34566666555543333332 344567788999999999886
No 311
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=30.34 E-value=46 Score=38.44 Aligned_cols=21 Identities=48% Similarity=0.532 Sum_probs=17.5
Q ss_pred CCCeEEEeeccCCCCCceEec
Q 004272 467 GYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm~ 487 (764)
|....|+-.|.+|+|||+|..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 335678999999999999984
No 312
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.14 E-value=16 Score=40.15 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=17.3
Q ss_pred HHHHCCCCeEEEeeccCCCCCceEec
Q 004272 462 RSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 462 ~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..+-.|. .|+-.|.||||||++|.
T Consensus 138 ~~ie~~~--siii~G~t~sGKTt~ln 161 (312)
T COG0630 138 LAIEARK--SIIICGGTASGKTTLLN 161 (312)
T ss_pred HHHHcCC--cEEEECCCCCCHHHHHH
Confidence 3333444 45778999999999984
No 313
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=29.99 E-value=3.5e+02 Score=29.25 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 004272 250 VLSKLVEEFEHRI 262 (764)
Q Consensus 250 ~~~~~~~~~~~~~ 262 (764)
.|+.+-.+||..+
T Consensus 170 ~L~eiR~~ye~~~ 182 (312)
T PF00038_consen 170 ALREIRAQYEEIA 182 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 3333334444333
No 314
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=29.98 E-value=27 Score=44.37 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=23.0
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
...|..++.+.+.++ ..|..||||||+|-
T Consensus 352 r~Av~~il~s~~v~v-v~G~AGTGKTT~l~ 380 (988)
T PRK13889 352 ADALAHVTDGRDLGV-VVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHHhcCCCeEE-EEeCCCCCHHHHHH
Confidence 346777888877655 88999999999873
No 315
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=29.91 E-value=18 Score=36.58 Aligned_cols=15 Identities=47% Similarity=0.465 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999875
No 316
>PTZ00014 myosin-A; Provisional
Probab=29.89 E-value=41 Score=42.01 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=26.0
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.....++++ .+.|-||+.-|.+|||||.+.
T Consensus 166 ifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 166 VFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 6665544445544 689999999999999999654
No 317
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=29.88 E-value=24 Score=34.75 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999875
No 318
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.75 E-value=2.3e+02 Score=28.81 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=12.1
Q ss_pred hhhhHHHHHHhhhhhhhhccC
Q 004272 372 SGYHRVLEENRKLYNQVQDLK 392 (764)
Q Consensus 372 ~~~~~~~~e~r~l~n~~~~lk 392 (764)
....+.-.||+.|-..+.+.+
T Consensus 165 ~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 165 EKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555567777766665443
No 319
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=29.72 E-value=21 Score=38.64 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.2
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-+|++|||||+.-
T Consensus 61 vll~G~pGTGKT~lA 75 (284)
T TIGR02880 61 MSFTGNPGTGKTTVA 75 (284)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999865
No 320
>PRK05580 primosome assembly protein PriA; Validated
Probab=29.56 E-value=32 Score=42.07 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=24.3
Q ss_pred cCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 444 YGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 444 F~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+.....|.++++.+. ... +++ .++.+|+||||||.+..
T Consensus 143 ~~Lt~~Q~~ai~~i~---~~~--~~~-~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 143 PTLNPEQAAAVEAIR---AAA--GFS-PFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCHHHHHHHHHHH---hcc--CCC-cEEEECCCCChHHHHHH
Confidence 345566776665542 111 333 47889999999997763
No 321
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.54 E-value=19 Score=40.91 Aligned_cols=19 Identities=47% Similarity=0.496 Sum_probs=15.7
Q ss_pred eEEEeeccCCCCCceEecC
Q 004272 470 VCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~G 488 (764)
-.|.-.|++|+|||+|+..
T Consensus 207 ~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3567889999999999854
No 322
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=29.40 E-value=32 Score=35.40 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=18.9
Q ss_pred HHHHHCC-C--CeEEEeeccCCCCCceE
Q 004272 461 IRSVLDG-Y--NVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 461 V~svl~G-~--N~~IfaYGqTGSGKTyT 485 (764)
++.++.| . +..++.+|++|||||..
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 4666643 2 77889999999999754
No 323
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.30 E-value=36 Score=37.30 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=32.4
Q ss_pred EEEeeccCCCCCceEecCCCC-------------CCcccccchHHHHHHHHHHHhhhccceE
Q 004272 471 CIFAYGQTGSGKTYTMTGPRE-------------LTEKSQGVNYRALSDLFLIAEQRKDIFR 519 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G~~~-------------~~~~~~GIi~ral~~LF~~~~~~~~~~~ 519 (764)
-|+-||..|+|||-.--.-.+ .-....|==|+.+++||...+....+..
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIv 282 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 282 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceE
Confidence 478999999999854321110 0122345568999999999887766543
No 324
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=29.20 E-value=25 Score=34.61 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.8
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
++-+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999999855
No 325
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=29.09 E-value=44 Score=38.42 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=28.5
Q ss_pred hHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..-+.+..-++.+-+|....-|..|.-||||||.+
T Consensus 32 ~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 32 REIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 33344544568888999999999999999999987
No 326
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=29.03 E-value=20 Score=42.28 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4788999999999754
No 327
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=29.02 E-value=18 Score=36.43 Aligned_cols=15 Identities=47% Similarity=0.476 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999887
No 328
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.99 E-value=4e+02 Score=30.83 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=15.7
Q ss_pred hHHHHHHhhhhhhhhcc--CCCEEEEEEeCC
Q 004272 375 HRVLEENRKLYNQVQDL--KGSIRVYCRVRP 403 (764)
Q Consensus 375 ~~~~~e~r~l~n~~~~l--kg~IrV~~RVRP 403 (764)
.+...+...|.+++... .+.|.|.=++.|
T Consensus 392 ~~l~~~~~~l~~~l~~~~~~~~I~v~~~vyp 422 (451)
T PF03961_consen 392 KELKEELKELKEELERSYKEARIKVRKRVYP 422 (451)
T ss_pred HHHHHHHHHHHHHHHhhccceEEEECCEEEC
Confidence 33334445566666665 345555555666
No 329
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=28.99 E-value=38 Score=39.03 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.8
Q ss_pred eEEEeeccCCCCCceEec
Q 004272 470 VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~ 487 (764)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568899999999999885
No 330
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=28.88 E-value=31 Score=33.37 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.1
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
+....|...|++|.||+..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 45567777999999998776
No 331
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=28.86 E-value=63 Score=36.27 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=25.3
Q ss_pred hhHHHH-HHHHCCCCeEEEeeccCCCCCceEec
Q 004272 456 DMQPLI-RSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 456 ~v~plV-~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..++ +.++.|-.-.++-.|+.|||||+-+-
T Consensus 35 ~l~~~lkqt~~~gEsnsviiigprgsgkT~li~ 67 (408)
T KOG2228|consen 35 HLSELLKQTILHGESNSVIIIGPRGSGKTILID 67 (408)
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCCCceEeeH
Confidence 344444 46788998889999999999999873
No 332
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.81 E-value=20 Score=41.20 Aligned_cols=18 Identities=39% Similarity=0.357 Sum_probs=15.5
Q ss_pred eEEEeeccCCCCCceEec
Q 004272 470 VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~ 487 (764)
..|.-.|++|+|||+|+-
T Consensus 192 ~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTA 209 (420)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467788999999999993
No 333
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=28.80 E-value=19 Score=44.55 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.0
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
|.-++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 344677899999999998
No 334
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.62 E-value=21 Score=30.33 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=13.1
Q ss_pred EEeeccCCCCCceEecC
Q 004272 472 IFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~G 488 (764)
++.+|..|+|||++...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45678889999988743
No 335
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=28.50 E-value=25 Score=39.28 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.-++-.+++..-.-++-.|.+|+|||..+-+
T Consensus 14 ~al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 14 LALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred HHHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 4566777786666788999999999998855
No 336
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=28.46 E-value=32 Score=38.72 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.4
Q ss_pred CCCCeEEEeeccCCCCCceE
Q 004272 466 DGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyT 485 (764)
.|..-+|+..|+.|+|||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred cCCceEEEEecCCCCchhHH
Confidence 59999999999999999974
No 337
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=28.41 E-value=46 Score=34.00 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=21.6
Q ss_pred HHHHHHHCCC---CeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGY---NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~---N~~IfaYGqTGSGKTyTm~ 487 (764)
+-++.++.|- ...+.-+|++|+|||..+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 4567777643 5567788999999998763
No 338
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=28.34 E-value=26 Score=37.75 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=26.9
Q ss_pred EEEeeccCCCCCceEe--------------cCCCCCCcccccchHHHHHHHHHHHhhhccc
Q 004272 471 CIFAYGQTGSGKTYTM--------------TGPRELTEKSQGVNYRALSDLFLIAEQRKDI 517 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm--------------~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~ 517 (764)
-++.||++|+|||..- -||.- -.---|==.+.++|-|...+++...
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL-VQMfIGdGAkLVRDAFaLAKEkaP~ 266 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL-VQMFIGDGAKLVRDAFALAKEKAPT 266 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH-HhhhhcchHHHHHHHHHHhhccCCe
Confidence 4789999999998532 12210 0000122245678888887776553
No 339
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=28.29 E-value=34 Score=40.03 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=23.0
Q ss_pred hHHHHHHHHCCC------CeEEEeeccCCCCCceEecC
Q 004272 457 MQPLIRSVLDGY------NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 457 v~plV~svl~G~------N~~IfaYGqTGSGKTyTm~G 488 (764)
|+.=+..+++|. .-.|+-.|++|||||+.|-+
T Consensus 14 Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 14 IQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 444455666663 34577899999999999874
No 340
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=28.21 E-value=33 Score=38.12 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=25.5
Q ss_pred ecCCCCChHhHHhh--hHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 443 VYGPSATQAEVFSD--MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 443 VF~~~atQ~eVf~~--v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+-|..+..-+|+. +..++..+..|. -|+-.|++|+|||...
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHH
Confidence 33344444445542 344555554444 4778999999998765
No 341
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=28.20 E-value=1.9e+02 Score=29.33 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHH
Q 004272 334 ELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRV 377 (764)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 377 (764)
||........+.+...+.++.+++.+|...++.++.+....+..
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~L 149 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTL 149 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555566666666666666666655555443
No 342
>CHL00195 ycf46 Ycf46; Provisional
Probab=27.94 E-value=21 Score=41.90 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.1
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
.-.|+-||++|+|||++.
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 346899999999999765
No 343
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=27.90 E-value=43 Score=41.99 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=25.4
Q ss_pred hHhHHhhhHHHHHHHHCCC------CeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~------N~~IfaYGqTGSGKTyTm 486 (764)
|...-+.+...|..+..|. .+.++-+|+||+|||++.
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 4555555555566555553 356777899999999876
No 344
>PRK04040 adenylate kinase; Provisional
Probab=27.86 E-value=25 Score=35.68 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+.+|.+|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999876
No 345
>PRK06762 hypothetical protein; Provisional
Probab=27.79 E-value=26 Score=34.04 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=12.3
Q ss_pred EEEeeccCCCCCceE
Q 004272 471 CIFAYGQTGSGKTYT 485 (764)
Q Consensus 471 ~IfaYGqTGSGKTyT 485 (764)
+|.-.|.+|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 566789999999873
No 346
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.55 E-value=40 Score=39.34 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=24.8
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCCC-eEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYN-VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~N-~~IfaYGqTGSGKTyTm 486 (764)
+||.|.++ +.+ +..+...+-.|.- ..++-||++|+|||++.
T Consensus 12 ~~~divGq----~~i---~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVGQ----DHV---KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccCc----HHH---HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 45555553 333 2333333334543 45788999999999876
No 347
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=27.41 E-value=2e+02 Score=30.09 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHhhhhhhhh
Q 004272 332 IQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQ 389 (764)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~r~l~n~~~ 389 (764)
+.|||..|--|..|++.++..-++++.+-+..+..|.+ -..+..+||...-.++|
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~---Ll~~a~~ERDEAr~qlq 57 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKD---LLKKAYQERDEAREQLQ 57 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 56888888888888888887777777665554444433 33444445543333333
No 348
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.40 E-value=35 Score=41.23 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=25.9
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCCC-eEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYN-VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~N-~~IfaYGqTGSGKTyTm 486 (764)
+||.|.+ |+.+...+..+ +-.|.- -.++-||+.|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L~~~---l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQALTNA---LTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHHHHH---HHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666664 55555443333 233433 45688999999999876
No 349
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=27.35 E-value=25 Score=34.00 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.-+|++|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998765
No 350
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.33 E-value=5e+02 Score=25.64 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=7.9
Q ss_pred HHHHHHHhhhhhhhhh
Q 004272 352 KFHEEFSNLGIHIHGL 367 (764)
Q Consensus 352 ~~~~~~~~l~~~~~~~ 367 (764)
.+.+++..+...+..+
T Consensus 120 ~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 120 ELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 351
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=27.31 E-value=16 Score=38.12 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.3
Q ss_pred eeccCCCCCceEe
Q 004272 474 AYGQTGSGKTYTM 486 (764)
Q Consensus 474 aYGqTGSGKTyTm 486 (764)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999987
No 352
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=27.30 E-value=29 Score=38.09 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCceE
Q 004272 471 CIFAYGQTGSGKTYT 485 (764)
Q Consensus 471 ~IfaYGqTGSGKTyT 485 (764)
.|+-.|+||||||-.
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 688899999999863
No 353
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=27.30 E-value=20 Score=45.09 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=16.6
Q ss_pred CCeEEEeeccCCCCCceEe
Q 004272 468 YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm 486 (764)
.|.-.+..|+||||||++|
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 4677788899999999998
No 354
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=27.01 E-value=43 Score=34.42 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=20.2
Q ss_pred HHHHHHC-CC--CeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLD-GY--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~-G~--N~~IfaYGqTGSGKTyTm 486 (764)
-++.++. |. ..++.-+|++|+|||+..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 3566664 43 667888999999998865
No 355
>PRK14527 adenylate kinase; Provisional
Probab=26.69 E-value=29 Score=34.84 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+.+|++|||||+..
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999998754
No 356
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.68 E-value=42 Score=37.38 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
+...+-.|. ...++-||+.|+|||++.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333333564 447778999999999776
No 357
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=26.56 E-value=21 Score=37.59 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
+.-.|++|||||+-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999876
No 358
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=26.42 E-value=23 Score=35.47 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|++|||||+.+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666899999998765
No 359
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=26.40 E-value=49 Score=37.96 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=14.9
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356889999999999764
No 360
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=26.36 E-value=37 Score=33.64 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=22.6
Q ss_pred HHHHHHHC-CCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLD-GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~-G~N~~IfaYGqTGSGKTyTm 486 (764)
.++..+.. .....|+..|..|||||..+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 45666665 77889999999999999755
No 361
>PRK14530 adenylate kinase; Provisional
Probab=26.35 E-value=27 Score=35.86 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
-|+-.|++|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677999999998754
No 362
>PRK11637 AmiB activator; Provisional
Probab=26.34 E-value=4.7e+02 Score=29.95 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=7.5
Q ss_pred CCCcceEEEEEEee
Q 004272 596 SRSHSCLTVHVQGK 609 (764)
Q Consensus 596 SRSH~ifti~v~~~ 609 (764)
...|+.|.|+..+.
T Consensus 405 ~~~~l~fei~~~~~ 418 (428)
T PRK11637 405 GRPSLYFEIRRQGQ 418 (428)
T ss_pred CCCeEEEEEEECCE
Confidence 34566666665443
No 363
>PRK00300 gmk guanylate kinase; Provisional
Probab=26.31 E-value=24 Score=35.58 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.1
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
.-.|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345778899999999654
No 364
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=26.23 E-value=49 Score=34.55 Aligned_cols=25 Identities=24% Similarity=0.479 Sum_probs=19.1
Q ss_pred HHHHHHC-CC--CeEEEeeccCCCCCce
Q 004272 460 LIRSVLD-GY--NVCIFAYGQTGSGKTY 484 (764)
Q Consensus 460 lV~svl~-G~--N~~IfaYGqTGSGKTy 484 (764)
-++.++. |+ ..+++-+|++|||||.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 3566665 43 6778899999999986
No 365
>PRK03839 putative kinase; Provisional
Probab=26.10 E-value=27 Score=34.56 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=12.1
Q ss_pred EEeeccCCCCCceE
Q 004272 472 IFAYGQTGSGKTYT 485 (764)
Q Consensus 472 IfaYGqTGSGKTyT 485 (764)
|+-.|.+|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999874
No 366
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=26.10 E-value=46 Score=40.24 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=25.2
Q ss_pred CCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 445 ~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+...|..+..++ +.+.-.....-++..|+||||||....
T Consensus 235 ~lt~~Q~~ai~~I---~~~~~~~~~~~~Ll~g~TGSGKT~va~ 274 (630)
T TIGR00643 235 KLTRAQKRVVKEI---LQDLKSDVPMNRLLQGDVGSGKTLVAA 274 (630)
T ss_pred CCCHHHHHHHHHH---HHHhccCCCccEEEECCCCCcHHHHHH
Confidence 4555676666553 222223344457889999999998653
No 367
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=26.08 E-value=45 Score=35.57 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=28.5
Q ss_pred HhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 451 AEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 451 ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+||-...||+..+.+---.-.+-.|++++|||+.+
T Consensus 119 r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlL 154 (308)
T COG3854 119 RQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLL 154 (308)
T ss_pred hhhhccchHHHHHHHhcCceeeEEecCCCCChHHHH
Confidence 456777788999998766565677899999999766
No 368
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=26.03 E-value=20 Score=40.52 Aligned_cols=16 Identities=50% Similarity=0.721 Sum_probs=12.2
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999766
No 369
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=26.02 E-value=30 Score=40.86 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=30.1
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+.||.+++.+..=..+.+.+ ..+ ...+.-|+-+|.+||||++.-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~----~~~-A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA----RKL-AMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH----HHH-hCCCCCEEEECCCCccHHHHH
Confidence 4578998887654333333332 222 335777999999999997754
No 370
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=25.90 E-value=22 Score=32.61 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.1
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|.-+|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999876
No 371
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=25.82 E-value=54 Score=34.06 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.4
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
+....|.-.|++|||||+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 56667777899999999876
No 372
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.75 E-value=4.9e+02 Score=29.13 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 004272 315 KSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSN 359 (764)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 359 (764)
+.++...+.+..+.+++-++|.++++++.+-.+.+..+|+.-+.+
T Consensus 147 qlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~e 191 (401)
T PF06785_consen 147 QLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVE 191 (401)
T ss_pred HHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 344555566666777777777777777777767777777655444
No 373
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=25.75 E-value=29 Score=35.48 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=19.9
Q ss_pred EEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHH
Q 004272 472 IFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFL 509 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~ 509 (764)
|+.+|++|||||+.-.- -....|+..-.+.+|+.
T Consensus 2 I~i~G~pGsGKsT~a~~----La~~~g~~~is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKR----IAEKYGLPHISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHH----HHHHcCCCeeehhHHHH
Confidence 67899999999874311 01223555544555553
No 374
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=25.74 E-value=30 Score=31.21 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999998766
No 375
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=25.69 E-value=51 Score=35.90 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=20.5
Q ss_pred HHHHHHCCC---CeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGY---NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~---N~~IfaYGqTGSGKTyTm~ 487 (764)
-++.++.|- ...+.-||++|||||..+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 356666643 5567889999999998653
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=25.63 E-value=25 Score=36.24 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4456799999999998
No 377
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=25.52 E-value=68 Score=39.71 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=28.4
Q ss_pred hHHhh--hHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 452 EVFSD--MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 452 eVf~~--v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.-|.. |..+++.+-+|.+-.+++. .||||||+|-+-
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 34543 6889999999999965554 799999999864
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=25.28 E-value=31 Score=39.74 Aligned_cols=19 Identities=42% Similarity=0.457 Sum_probs=15.9
Q ss_pred CCeEEEeeccCCCCCceEe
Q 004272 468 YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm 486 (764)
....|+..|.+|||||+|.
T Consensus 98 ~p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CCEEEEEECCCCCcHHHHH
Confidence 3457888899999999995
No 379
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=25.08 E-value=32 Score=33.78 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998854
No 380
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=24.72 E-value=37 Score=41.42 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=26.4
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.|+.+++.+..-..+.+. +.. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~----~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ----VEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHH----HHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 3455555544333333333 333 2356778899999999998754
No 381
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.71 E-value=37 Score=40.41 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=23.1
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
+||.|. .|+.+...+...+ -.|. .-.++-||+.|+|||++.
T Consensus 14 ~f~dii----Gq~~~v~~L~~~i---~~~rl~ha~Lf~Gp~GvGKTTlA 55 (546)
T PRK14957 14 SFAEVA----GQQHALNSLVHAL---ETQKVHHAYLFTGTRGVGKTTLG 55 (546)
T ss_pred cHHHhc----CcHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 345444 4555554433333 3333 223556999999999754
No 382
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.58 E-value=6e+02 Score=30.72 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=16.6
Q ss_pred HHHHHHccchhHHHHHHHhhcCC
Q 004272 69 EEFRLGLRSGIILCNVINKVQPG 91 (764)
Q Consensus 69 e~f~~~LrdGvvLC~L~N~l~Pg 91 (764)
++..+..+|+-=|-+++..+-||
T Consensus 57 DnvyEL~~~~~~li~il~~lP~~ 79 (652)
T COG2433 57 DNVYELGADKRDLIRILKRLPEG 79 (652)
T ss_pred ccHHHHhcChhHHHHHHHhCCCC
Confidence 56777777777777777777665
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=24.51 E-value=27 Score=35.79 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.1
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
+++-+|++|||||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 78889999999998874
No 384
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.43 E-value=4.1e+02 Score=22.04 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004272 325 FDQQHEDIQELKHTLHTTKAGIQFMQMK 352 (764)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 352 (764)
++++..+++.|...+..+..++..++..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554443
No 385
>PRK06851 hypothetical protein; Provisional
Probab=24.41 E-value=33 Score=38.76 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=22.4
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.+++++|-+-.++-.|.+|+|||++|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 455566777888899999999999998
No 386
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.35 E-value=72 Score=35.58 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.8
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
+.-..|+-.|..|+|||+|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 55778889999999999998
No 387
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=24.23 E-value=41 Score=36.59 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=21.8
Q ss_pred hHHHHHHHHCC---CCeEEEeeccCCCCCceEe
Q 004272 457 MQPLIRSVLDG---YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 457 v~plV~svl~G---~N~~IfaYGqTGSGKTyTm 486 (764)
++.++-.+|.| .-.++|.||..|+|||..+
T Consensus 61 l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 61 LQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 44555555655 3567999999999997665
No 388
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=24.17 E-value=49 Score=34.95 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=17.8
Q ss_pred HHHHHCC---CCeEEEeeccCCCCCceE
Q 004272 461 IRSVLDG---YNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 461 V~svl~G---~N~~IfaYGqTGSGKTyT 485 (764)
++.++.| ....++-||.+|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 3445553 266788999999999853
No 389
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.16 E-value=47 Score=38.95 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=20.9
Q ss_pred ChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
.|+.+...+...+. .|. .-.++-||+.|+|||++.
T Consensus 20 Gq~~i~~~L~~~i~---~~~i~hayLf~Gp~G~GKTtlA 55 (486)
T PRK14953 20 GQEIVVRILKNAVK---LQRVSHAYIFAGPRGTGKTTIA 55 (486)
T ss_pred ChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 45555554443333 232 334556999999998654
No 390
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.04 E-value=5.9e+02 Score=25.43 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhHHHHHH
Q 004272 332 IQELKHTLHTTKAGIQF 348 (764)
Q Consensus 332 ~~~l~~~~~~~~~~~~~ 348 (764)
+..++........++..
T Consensus 132 l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 391
>PRK09401 reverse gyrase; Reviewed
Probab=24.02 E-value=52 Score=42.81 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..++.|.|+.+.| +||||||..
T Consensus 87 ~~i~~il~g~dv~i~A--pTGsGKT~f 111 (1176)
T PRK09401 87 TWAKRLLLGESFAIIA--PTGVGKTTF 111 (1176)
T ss_pred HHHHHHHCCCcEEEEc--CCCCCHHHH
Confidence 3566788999886655 999999953
No 392
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.98 E-value=34 Score=36.22 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
-++..+|++|||||+.+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788999999999876
No 393
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=32 Score=39.97 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=19.1
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+.-.+..|.| ++.||+.|||||.+..
T Consensus 191 leiAAAGgHn--Ll~~GpPGtGKTmla~ 216 (490)
T COG0606 191 LEIAAAGGHN--LLLVGPPGTGKTMLAS 216 (490)
T ss_pred HHHHHhcCCc--EEEecCCCCchHHhhh
Confidence 4445556666 4789999999998764
No 394
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=23.75 E-value=42 Score=41.52 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..|..++.+-. .++-.|..|+||||+|-+
T Consensus 359 ~Av~~i~~s~~-~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 359 EAVRHVTGSGD-IAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 35566666533 556889999999999854
No 395
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.73 E-value=2.1e+02 Score=33.43 Aligned_cols=26 Identities=0% Similarity=0.098 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004272 322 KMIFDQQHEDIQELKHTLHTTKAGIQ 347 (764)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~~~~~~ 347 (764)
+..+.++|....+|+..|+.++.+++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555544444444
No 396
>PRK00279 adk adenylate kinase; Reviewed
Probab=23.72 E-value=33 Score=35.16 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCceE
Q 004272 471 CIFAYGQTGSGKTYT 485 (764)
Q Consensus 471 ~IfaYGqTGSGKTyT 485 (764)
.|+.+|++|||||+.
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999964
No 397
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.68 E-value=1.2e+03 Score=28.13 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHhhhhcC-----CCCCCCChHHHHHHccchhHHHHHHHhhcCCC
Q 004272 41 SRRYEAAGWLRKMVGVVAAR-----DLPAEPSEEEFRLGLRSGIILCNVINKVQPGA 92 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~-----~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~ 92 (764)
.++.++.+-|.+.|-.-..+ ++-..|+.-||.. ++=-|.++|.|+.
T Consensus 70 ~~~s~c~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~------iFkfLY~~Ldp~y 120 (581)
T KOG0995|consen 70 RYRSQCIRQIYNFLVENGFSHPISIKLLMKPSVKDFIA------IFKFLYGFLDPDY 120 (581)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhhhhcCCCccccHHH------HHHHHHhccCCCc
Confidence 45677777777776432221 2223466667765 3446777887763
No 398
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=62 Score=35.36 Aligned_cols=28 Identities=43% Similarity=0.621 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+..|..++.|.++ +|-.|+|+|||-|..
T Consensus 55 qrAi~~IlkGrdV--iaQaqSGTGKTa~~s 82 (400)
T KOG0328|consen 55 QRAIPQILKGRDV--IAQAQSGTGKTATFS 82 (400)
T ss_pred hhhhhhhhcccce--EEEecCCCCceEEEE
Confidence 4567788899997 577799999998873
No 399
>PLN02200 adenylate kinase family protein
Probab=23.47 E-value=36 Score=35.80 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=22.4
Q ss_pred CeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHH
Q 004272 469 NVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFL 509 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~ 509 (764)
...|+..|++|||||+.-.. -....|+..-...+|+.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~----La~~~g~~his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEK----IVETFGFKHLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHH----HHHHhCCeEEEccHHHH
Confidence 35789999999999876321 01223554444455553
No 400
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=23.42 E-value=29 Score=35.64 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999764
No 401
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=23.39 E-value=49 Score=41.38 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=18.1
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+++.+ .. |-.++..|+||||||..+
T Consensus 8 ~~i~~~l-~~-~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 8 PALRDAL-AA-HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHHH-Hc-CCcEEEECCCCCCHHHHH
Confidence 3444444 33 335668899999999865
No 402
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.37 E-value=40 Score=39.75 Aligned_cols=15 Identities=47% Similarity=0.820 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCceE
Q 004272 471 CIFAYGQTGSGKTYT 485 (764)
Q Consensus 471 ~IfaYGqTGSGKTyT 485 (764)
-|+-||++|+|||-.
T Consensus 258 GiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLI 272 (744)
T ss_pred eEEEECCCCCChhHH
Confidence 389999999999963
No 403
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.37 E-value=27 Score=39.21 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=11.7
Q ss_pred eeccCCCCCceEe
Q 004272 474 AYGQTGSGKTYTM 486 (764)
Q Consensus 474 aYGqTGSGKTyTm 486 (764)
-.|++|||||+++
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999987
No 404
>PHA02774 E1; Provisional
Probab=23.34 E-value=52 Score=39.40 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=19.5
Q ss_pred HHHHHCC--CCeEEEeeccCCCCCceEec
Q 004272 461 IRSVLDG--YNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 461 V~svl~G--~N~~IfaYGqTGSGKTyTm~ 487 (764)
+..++.| +.-||+-||+.|+||||--.
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa~ 452 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFCM 452 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3444444 34699999999999998643
No 405
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.23 E-value=48 Score=38.82 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=21.7
Q ss_pred hHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
|+.+...+. ..+-.|. ..+++-||+.|+|||.+.
T Consensus 23 Qe~iv~~L~---~~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 23 QDLAIGALQ---NALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred hHHHHHHHH---HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 444444433 3333444 345889999999999876
No 406
>PRK10865 protein disaggregation chaperone; Provisional
Probab=23.16 E-value=29 Score=43.52 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=23.8
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+..+|+-+.......++-||++|+|||+...|
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 66666655555555566789999999999876
No 407
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=23.10 E-value=65 Score=39.67 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
-.|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45889999999999865
No 408
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=22.95 E-value=45 Score=38.69 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=24.8
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCCC-eEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYN-VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~N-~~IfaYGqTGSGKTyTm 486 (764)
+||.|++ |+.+- ..+...+-.|.- -+++-||+.|+|||.+.
T Consensus 15 ~~~diiG----q~~~v---~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILG----QDAVV---AVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcC----cHHHH---HHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 4666665 33332 333333445653 45666999999999776
No 409
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=22.87 E-value=55 Score=39.04 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=21.5
Q ss_pred ChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
.|+.+-..+...+.. |. .-.++-||+.|+|||.+.
T Consensus 20 Gq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 20 GQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred CcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHH
Confidence 456666555444432 32 334555999999999654
No 410
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=22.82 E-value=32 Score=33.29 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.0
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567799999997644
No 411
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.80 E-value=38 Score=39.00 Aligned_cols=14 Identities=50% Similarity=0.776 Sum_probs=11.9
Q ss_pred EEeeccCCCCCceE
Q 004272 472 IFAYGQTGSGKTYT 485 (764)
Q Consensus 472 IfaYGqTGSGKTyT 485 (764)
|+..|+||||||+.
T Consensus 229 vLllGPtGsGKTll 242 (564)
T KOG0745|consen 229 VLLLGPTGSGKTLL 242 (564)
T ss_pred EEEECCCCCchhHH
Confidence 57789999999963
No 412
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=22.76 E-value=37 Score=36.50 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.6
Q ss_pred eEEEeeccCCCCCceE
Q 004272 470 VCIFAYGQTGSGKTYT 485 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyT 485 (764)
-+|+..|.+|||||+.
T Consensus 3 ~liil~G~pGSGKSTl 18 (300)
T PHA02530 3 KIILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEEcCCCCCHHHH
Confidence 3678899999999876
No 413
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=22.71 E-value=29 Score=42.69 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.8
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
|.-++..|+||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 566788899999999998
No 414
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.71 E-value=50 Score=38.95 Aligned_cols=25 Identities=44% Similarity=0.587 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..|.-+|.|.++.|-| |||||||-.
T Consensus 166 q~IP~lL~grD~lV~a--QTGSGKTLA 190 (708)
T KOG0348|consen 166 QAIPVLLEGRDALVRA--QTGSGKTLA 190 (708)
T ss_pred cchhhhhcCcceEEEc--CCCCcccHH
Confidence 4566778899986655 999999953
No 415
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=22.63 E-value=57 Score=34.72 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.1
Q ss_pred CeEEEeeccCCCCCce
Q 004272 469 NVCIFAYGQTGSGKTY 484 (764)
Q Consensus 469 N~~IfaYGqTGSGKTy 484 (764)
..+++-+|++|+|||.
T Consensus 36 gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 36 YSVINITGVSDTGKSL 51 (259)
T ss_pred CcEEEEEcCCCCCHHH
Confidence 6678889999999986
No 416
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=22.57 E-value=34 Score=32.47 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=15.8
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
..+.-|+-+|..||||++..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHH
T ss_pred CCCCcEEEEcCCCCCHHHHH
Confidence 56667788999999998864
No 417
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=22.52 E-value=34 Score=41.39 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.2
Q ss_pred CeEEEeeccCCCCCceEecC
Q 004272 469 NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G 488 (764)
..-++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34577888999999999954
No 418
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=22.48 E-value=32 Score=35.25 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCCceEec
Q 004272 470 VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~ 487 (764)
..+.-.|++|||||..|-
T Consensus 29 ~~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 29 GLFLICGPTGAGKSTILD 46 (213)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356678999999998773
No 419
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.40 E-value=3.7e+02 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004272 322 KMIFDQQHEDIQELKHTLHTT 342 (764)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~ 342 (764)
+..++..+++..+|...+...
T Consensus 141 kekl~E~~~EkeeL~~eleel 161 (290)
T COG4026 141 KEKLEELQKEKEELLKELEEL 161 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 420
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=22.28 E-value=38 Score=41.72 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.6
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+..+++-+..+....++-||++|+|||+...|
T Consensus 191 i~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 191 LERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 44566555555555678899999999999866
No 421
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.27 E-value=50 Score=39.00 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=17.6
Q ss_pred HHCCC-CeEEEeeccCCCCCceEe
Q 004272 464 VLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 464 vl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
+..|. ...++-||+.|+|||++.
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHH
Confidence 34454 357888999999999876
No 422
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=22.25 E-value=68 Score=35.14 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=19.6
Q ss_pred HHHHHHCCC---CeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGY---NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~---N~~IfaYGqTGSGKTyTm 486 (764)
-++.++.|- ...+.-||++|||||...
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 345566642 556778999999999765
No 423
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=22.23 E-value=54 Score=42.68 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..++.|.+++ +.++||||||+.
T Consensus 85 ~~i~~il~G~d~v--i~ApTGsGKT~f 109 (1171)
T TIGR01054 85 MWAKRVLRGDSFA--IIAPTGVGKTTF 109 (1171)
T ss_pred HHHHHHhCCCeEE--EECCCCCCHHHH
Confidence 4567789999876 456999999963
No 424
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=22.21 E-value=56 Score=38.51 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=21.2
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
...|..+++|.++ ++..|||||||...
T Consensus 57 ~~~IP~~l~g~Dv--i~~A~TGsGKT~Af 83 (513)
T COG0513 57 LAAIPLILAGRDV--LGQAQTGTGKTAAF 83 (513)
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 4567888899776 56779999998764
No 425
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.20 E-value=8.2e+02 Score=25.22 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=8.3
Q ss_pred hhhhHHHHHHhhhhhh
Q 004272 372 SGYHRVLEENRKLYNQ 387 (764)
Q Consensus 372 ~~~~~~~~e~r~l~n~ 387 (764)
.+|.++..||..||..
T Consensus 114 qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 114 QRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555543
No 426
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=22.20 E-value=43 Score=40.24 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=18.2
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..++.. + ..+-.|..|||||||+.
T Consensus 153 A~~~al~~-~-~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 153 AVALALKS-N-FSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHhhC-C-eEEEEcCCCCCHHHHHH
Confidence 45566663 3 34557999999999863
No 427
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=22.08 E-value=39 Score=34.11 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=11.6
Q ss_pred EEeeccCCCCCceE
Q 004272 472 IFAYGQTGSGKTYT 485 (764)
Q Consensus 472 IfaYGqTGSGKTyT 485 (764)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999764
No 428
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=22.01 E-value=39 Score=34.44 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=13.3
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|.-.|++|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35667899999999654
No 429
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=22.01 E-value=38 Score=28.32 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=11.5
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|..|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999997665
No 430
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.93 E-value=7.7e+02 Score=25.65 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 004272 324 IFDQQHEDIQELKHTLHTTKAGIQ 347 (764)
Q Consensus 324 ~~~~~~~~~~~l~~~~~~~~~~~~ 347 (764)
.+..++.++++|+..+..+..+..
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444444444444444443333
No 431
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=21.90 E-value=32 Score=38.40 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
+.-.|++|+|||+++
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999997
No 432
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=21.89 E-value=40 Score=33.34 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|++|||||+..
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999998764
No 433
>CHL00095 clpC Clp protease ATP binding subunit
Probab=21.87 E-value=67 Score=40.16 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=24.0
Q ss_pred ChHhHHhhhHHHHHHHHCCC------CeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~------N~~IfaYGqTGSGKTyTm 486 (764)
.|++.-..+...|....-|. .+.++-+|+||+|||++.
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 36666666655555444433 244556999999999764
No 434
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.84 E-value=32 Score=40.76 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=34.0
Q ss_pred hhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHH-HHhcccccCcccc-cCCchHHHHHHHHHHHHHHHhh
Q 004272 675 KLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFA-ERVATVELGAARV-NKDSSDVKELKEQVLTLSVTVI 748 (764)
Q Consensus 675 KLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA-~r~~~v~~g~~~~-n~~~~~v~~L~~ei~~Lk~~l~ 748 (764)
-+..+++.+-..+- .-+|.|=-.....+...++.+.-- --+.-|..|.... .........|-..+..|+.+-.
T Consensus 473 Dl~eii~~f~~~~~-~gvILTKlDEt~~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~ 547 (559)
T PRK12727 473 DLDEVVRRFAHAKP-QGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRRAAD 547 (559)
T ss_pred HHHHHHHHHHhhCC-eEEEEecCcCccchhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhhcc
Confidence 34455544322222 335555445566777777765432 2233334443211 1112344556666666665543
No 435
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=21.79 E-value=30 Score=40.47 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHhh
Q 004272 250 VLSKLVEEFEHRIASQYEQM 269 (764)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ 269 (764)
+..+-++|+|+|+..|-++.
T Consensus 387 ~S~rkLeEyErrLl~QEqqt 406 (495)
T PF12004_consen 387 MSHRKLEEYERRLLSQEQQT 406 (495)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 45677899999998886543
No 436
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.78 E-value=52 Score=39.50 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=25.9
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
+||.|.+ |+.|.+.++..+ -.|. .-+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~L~~~i---~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEPLSSAL---DAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 4555554 555555443333 3444 445788999999999865
No 437
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=21.78 E-value=61 Score=39.32 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=21.2
Q ss_pred hHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
|.+++..|...+. + +..+++-.+||||||+..
T Consensus 2 Q~~~~~~i~~al~---~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSLR---Q--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHHh---c--CCeEEEEcCCCCcHHHHH
Confidence 6677766543332 2 345778889999999554
No 438
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=21.77 E-value=33 Score=33.65 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceEec
Q 004272 472 IFAYGQTGSGKTYTMT 487 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~ 487 (764)
+.-.|.+|+|||.+..
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556999999998863
No 439
>PRK02496 adk adenylate kinase; Provisional
Probab=21.68 E-value=39 Score=33.57 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|++|||||+..
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998754
No 440
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=21.61 E-value=65 Score=42.15 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=15.4
Q ss_pred HCCCCeEEEeeccCCCCCceEe
Q 004272 465 LDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 465 l~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.+.. .++..|+||||||+.+
T Consensus 86 i~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 86 IRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHhCC-eEEEECCCCCCHHHHH
Confidence 34444 4667799999999855
No 441
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=21.58 E-value=60 Score=38.58 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=29.0
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
|.|+.+++.+. ....+...+.. +...+..|+-+|.+||||++.-
T Consensus 216 ~~f~~iiG~S~----~m~~~~~~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 216 YVLGDLLGQSP----QMEQVRQTILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred cchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 67887776543 33334444443 3456788999999999996543
No 442
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=21.57 E-value=42 Score=32.00 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=19.1
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+-..+.+. ..|+-+|.-|||||+-.-|
T Consensus 8 l~~~l~~g-~vi~L~GdLGaGKTtf~r~ 34 (123)
T PF02367_consen 8 LAQILKPG-DVILLSGDLGAGKTTFVRG 34 (123)
T ss_dssp HHHHHSS--EEEEEEESTTSSHHHHHHH
T ss_pred HHHhCCCC-CEEEEECCCCCCHHHHHHH
Confidence 33444444 4588999999999988754
No 443
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=21.56 E-value=69 Score=41.91 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=15.6
Q ss_pred HCCCCeEEEeeccCCCCCceEe
Q 004272 465 LDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 465 l~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.+ |-.++-.|.||||||+-+
T Consensus 79 l~~-~~vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 79 IAE-NQVVIIAGETGSGKTTQL 99 (1283)
T ss_pred HHh-CceEEEeCCCCCCcHHHH
Confidence 344 445667799999999865
No 444
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.39 E-value=45 Score=37.46 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEecCC
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGP 489 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~ 489 (764)
..+|..+|.|.+| +....||||||..+-+|
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 4578889999998 45679999999999876
No 445
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=21.37 E-value=75 Score=37.09 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=18.5
Q ss_pred CCCeEEEeeccCCCCCceEecC
Q 004272 467 GYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+....|+.+|.+|+|||++...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~ 274 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASA 274 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3578899999999999998744
No 446
>PRK04296 thymidine kinase; Provisional
Probab=21.33 E-value=25 Score=35.56 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=14.8
Q ss_pred EEEeeccCCCCCceEecC
Q 004272 471 CIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G 488 (764)
.++-+|+.|+|||..+.+
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 467799999999977755
No 447
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=21.33 E-value=50 Score=36.44 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=21.0
Q ss_pred HhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 454 FSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 454 f~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+..+...+..+. ..+.-|+-+|.+||||++.-
T Consensus 15 ~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 15 FLEVLEQVSRLA-PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred HHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 334433444443 45677888999999997654
No 448
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=21.32 E-value=35 Score=42.84 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=23.3
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+..+++-+..+..-.++-+|++|+|||+...|
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 66666655555544555689999999998876
No 449
>PTZ00301 uridine kinase; Provisional
Probab=21.20 E-value=29 Score=35.95 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=11.7
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|---|++|||||+.-
T Consensus 6 IgIaG~SgSGKTTla 20 (210)
T PTZ00301 6 IGISGASGSGKSSLS 20 (210)
T ss_pred EEEECCCcCCHHHHH
Confidence 445699999999764
No 450
>PRK14528 adenylate kinase; Provisional
Probab=21.18 E-value=40 Score=33.91 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+..|++|||||+..
T Consensus 4 i~i~G~pGsGKtt~a 18 (186)
T PRK14528 4 IIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998764
No 451
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=21.18 E-value=2.9e+02 Score=27.13 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHhhhhhhhhhHHHHhhhhHHHHHHhhhhhh
Q 004272 356 EFSNLGIHIHGLAHAASGYHRVLEENRKLYNQ 387 (764)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~~~~~e~r~l~n~ 387 (764)
++..-..+|++|......|+.....|+.++..
T Consensus 16 rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 16 RIKKKKEQLQELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344445555555556677666667777654
No 452
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=21.08 E-value=46 Score=36.69 Aligned_cols=16 Identities=44% Similarity=0.403 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-+|+|+||||..-
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999998765
No 453
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=21.06 E-value=40 Score=35.45 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=11.3
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
+.-+|+||||||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 566899999998764
No 454
>PRK01184 hypothetical protein; Provisional
Probab=21.02 E-value=42 Score=33.24 Aligned_cols=15 Identities=40% Similarity=0.335 Sum_probs=12.8
Q ss_pred EEEeeccCCCCCceE
Q 004272 471 CIFAYGQTGSGKTYT 485 (764)
Q Consensus 471 ~IfaYGqTGSGKTyT 485 (764)
.|+-.|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999984
No 455
>COG1162 Predicted GTPases [General function prediction only]
Probab=20.98 E-value=86 Score=34.52 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=19.2
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+...|.|. .++|+ ||+|-|||.-+
T Consensus 157 ~l~~~l~~~-~svl~-GqSGVGKSSLi 181 (301)
T COG1162 157 ELAELLAGK-ITVLL-GQSGVGKSTLI 181 (301)
T ss_pred HHHHHhcCC-eEEEE-CCCCCcHHHHH
Confidence 456677887 55555 99999998876
No 456
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=20.97 E-value=29 Score=31.45 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=12.3
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998765
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=20.94 E-value=43 Score=31.98 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=11.5
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|.-.|+||||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999998644
No 458
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=20.93 E-value=55 Score=35.78 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=15.1
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|---|++|||||+++
T Consensus 62 p~IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTA 79 (290)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456777899999999987
No 459
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=20.81 E-value=44 Score=33.19 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.0
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
+.+|+-.|++|||||...
T Consensus 4 ~~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CCEEEEECCCCcCHHHHH
Confidence 346899999999998765
No 460
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.74 E-value=58 Score=38.65 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=20.3
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+++-.++.+.++ +|+++||||||+...
T Consensus 165 ~aipvfl~~r~~--lAcapTGsgKtlaf~ 191 (593)
T KOG0344|consen 165 QAIPVFLEKRDV--LACAPTGSGKTLAFN 191 (593)
T ss_pred hhhhhhhcccce--EEeccCCCcchhhhh
Confidence 455666666664 899999999987753
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=20.70 E-value=61 Score=37.88 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=36.7
Q ss_pred hHhHHHHHHHHHHHhcc--CCCCCCCCChhhHHhh-hccCCCc------cEEEEEeeCCCCCCHHHHHHHHH
Q 004272 649 NRSLSALGDVIASLAQK--NPHVPYRNSKLTQLLQ-DSLGGQA------KTLMFVHISPEPDAVGETISTLK 711 (764)
Q Consensus 649 NkSLsaLg~VI~aLa~k--~~hiPYR~SKLT~LLq-dsLgGns------kt~mI~~ISP~~~~~~ETlsTL~ 711 (764)
-||..++.-+..++.++ .-++.|-+|+=.-+.+ .+||-+- ..+.|.++.|.....++.+..+.
T Consensus 275 GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~ 346 (484)
T TIGR02655 275 GKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIK 346 (484)
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHH
Confidence 46777776665555443 2356676664333222 3455322 24778888898777777655554
No 462
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=20.61 E-value=61 Score=38.42 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=30.0
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.|.||.+++.+. ....+...+..+ ...+..|+-+|.+||||++.-
T Consensus 208 ~~~f~~iiG~S~----~m~~~~~~i~~~-A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASA----PMEQVRALVRLY-ARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCH----HHHHHHHHHHHH-hCCCCcEEEECCCCcCHHHHH
Confidence 377888776543 333344444433 456788999999999997654
No 463
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.57 E-value=42 Score=40.93 Aligned_cols=49 Identities=33% Similarity=0.433 Sum_probs=31.6
Q ss_pred CCeEEEeeccCCCCCceEecCCC-------------CCCcccccchHHHHHHHHHHHhhhcc
Q 004272 468 YNVCIFAYGQTGSGKTYTMTGPR-------------ELTEKSQGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G~~-------------~~~~~~~GIi~ral~~LF~~~~~~~~ 516 (764)
...-|+-||++|+||||...--. +.-..--|--...+++||...+.-+.
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKP 761 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCC
Confidence 34569999999999999753210 00011235556778999988766544
No 464
>PRK06851 hypothetical protein; Provisional
Probab=20.50 E-value=50 Score=37.35 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.9
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+++++++.+-.++--|++|+|||..|
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 567778899999999999999999877
No 465
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=20.46 E-value=77 Score=35.28 Aligned_cols=29 Identities=34% Similarity=0.424 Sum_probs=22.1
Q ss_pred HHHHHHHHC--CC--CeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLD--GY--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~--G~--N~~IfaYGqTGSGKTyTm 486 (764)
.+-++.+|. |+ ...+.-||++|||||...
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 456788887 44 456789999999999654
No 466
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.43 E-value=5.1e+02 Score=32.38 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=14.3
Q ss_pred cccCCChhHHHHHHHHHHhcccc
Q 004272 140 LEQGGKSARVVNCVLALKSYGEW 162 (764)
Q Consensus 140 L~eg~n~~kVv~cL~aL~~~~~~ 162 (764)
|.+.-+.---++|+.|++.++..
T Consensus 260 l~~~~~~l~~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 260 LKFLFKEFDFLDSLQARARYAKA 282 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444567788888877664
No 467
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=20.30 E-value=41 Score=35.35 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.2
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|+-.|..|||||+.-
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999865
No 468
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=20.30 E-value=46 Score=36.68 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
++..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567899999999764
No 469
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=20.22 E-value=72 Score=32.77 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=18.6
Q ss_pred HHHHHC-CC--CeEEEeeccCCCCCceEe
Q 004272 461 IRSVLD-GY--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 461 V~svl~-G~--N~~IfaYGqTGSGKTyTm 486 (764)
++.++. |. ...+.-+|.+|+|||...
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 566664 43 556677999999998754
No 470
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=20.18 E-value=77 Score=36.43 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57899999999999876
No 471
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=20.15 E-value=38 Score=35.16 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.9
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
+..-.|+.|||||..|.
T Consensus 25 ~~~i~GpNGsGKStll~ 41 (243)
T cd03272 25 HNVVVGRNGSGKSNFFA 41 (243)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 44577999999999873
No 472
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=20.15 E-value=68 Score=37.58 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHCC---CCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDG---YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G---~N~~IfaYGqTGSGKTyTm 486 (764)
+-++.++.| ....++.+|.+|||||.-.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 346777764 4678899999999998644
No 473
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=20.14 E-value=43 Score=38.61 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
-|+-+|+||+|||+..
T Consensus 49 ~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 49 NILMIGPTGVGKTEIA 64 (441)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999865
No 474
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=20.13 E-value=89 Score=34.49 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=20.0
Q ss_pred HHHHHHCC-C--CeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDG-Y--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G-~--N~~IfaYGqTGSGKTyTm 486 (764)
-++.+|.| . ...+.-||++|||||..+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 46677765 2 455678999999999765
No 475
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=20.12 E-value=34 Score=36.06 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=28.0
Q ss_pred eEEEeeccCCCCCceEec------CCCCC-CcccccchHHHHHHHHHHHhhh
Q 004272 470 VCIFAYGQTGSGKTYTMT------GPREL-TEKSQGVNYRALSDLFLIAEQR 514 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~------G~~~~-~~~~~GIi~ral~~LF~~~~~~ 514 (764)
-+-..+|++|||||.|+- |-.-. -.-.+++-+.++..||.-+.+.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~ 84 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS 84 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc
Confidence 344569999999999983 32110 0113577788888888766543
No 476
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.08 E-value=3.3e+02 Score=33.74 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=16.6
Q ss_pred EEEEecCCCcCccccCCchhhHHHH
Q 004272 621 MHLVDLAGSERVNKSEVTGDRLKEA 645 (764)
Q Consensus 621 L~lVDLAGSEr~~~s~~~g~rlkE~ 645 (764)
...+|-+||-...+++.++.+-.++
T Consensus 958 ~r~~~q~gs~Tp~k~g~~~kkpeiA 982 (1118)
T KOG1029|consen 958 VRPKDQEGSGTPPKQGPTPKKPEIA 982 (1118)
T ss_pred eeehhccCCCCCCCCCCCCCCchhh
Confidence 3467778887777777777664333
No 477
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.04 E-value=1.8e+02 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004272 325 FDQQHEDIQELKHTLHTTKAGIQFMQMKFH 354 (764)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 354 (764)
++..+++...|+..+...+++++.+.+.|+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~q 31 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQ 31 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666667777777666666666555443
No 478
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=20.02 E-value=1.3e+02 Score=33.94 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=35.7
Q ss_pred HHHHHHCCC---CeEEEeeccCCCCCc---------------eEecCCCCCCcccccchHHHHHHHHH
Q 004272 460 LIRSVLDGY---NVCIFAYGQTGSGKT---------------YTMTGPRELTEKSQGVNYRALSDLFL 509 (764)
Q Consensus 460 lV~svl~G~---N~~IfaYGqTGSGKT---------------yTm~G~~~~~~~~~GIi~ral~~LF~ 509 (764)
.+.++-.|+ .-.+.-.|++|+||| ||+.|.|- .++-.+++|..+++.|.
T Consensus 76 ~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm-~e~PL~L~P~~~r~~~~ 142 (358)
T PF08298_consen 76 YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM-HEEPLHLFPKELRREFE 142 (358)
T ss_pred HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc-ccChhhhCCHhHHHHHH
Confidence 455555555 556888999999997 78888664 23335899999888774
Done!