Query 004272
Match_columns 764
No_of_seqs 566 out of 2578
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u06_A Protein claret segregat 100.0 8.8E-92 3E-96 780.2 37.2 348 374-729 40-392 (412)
2 4etp_A Kinesin-like protein KA 100.0 2.1E-91 7.1E-96 776.9 37.7 345 373-724 39-402 (403)
3 3cob_A Kinesin heavy chain-lik 100.0 4.5E-91 1.5E-95 764.6 28.3 357 389-751 1-358 (369)
4 2rep_A Kinesin-like protein KI 100.0 1.7E-89 5.8E-94 753.8 31.3 339 381-719 10-376 (376)
5 3t0q_A AGR253WP; kinesin, alph 100.0 8.3E-88 2.8E-92 735.6 32.4 327 390-723 2-348 (349)
6 2h58_A Kinesin-like protein KI 100.0 5.7E-87 1.9E-91 723.6 33.8 324 390-721 1-330 (330)
7 1f9v_A Kinesin-like protein KA 100.0 1.2E-86 4E-91 725.7 29.9 327 391-724 1-346 (347)
8 2vvg_A Kinesin-2; motor protei 100.0 1.3E-86 4.5E-91 725.1 29.9 332 392-731 3-346 (350)
9 2y65_A Kinesin, kinesin heavy 100.0 1E-86 3.4E-91 729.7 27.9 343 390-744 8-360 (365)
10 3b6u_A Kinesin-like protein KI 100.0 9.6E-87 3.3E-91 730.4 27.3 342 386-731 14-364 (372)
11 3lre_A Kinesin-like protein KI 100.0 1.6E-86 5.6E-91 726.5 28.4 329 384-719 1-355 (355)
12 3bfn_A Kinesin-like protein KI 100.0 1.2E-86 4.1E-91 732.0 27.4 337 385-729 13-356 (388)
13 1bg2_A Kinesin; motor protein, 100.0 1.3E-86 4.3E-91 719.5 25.6 319 390-719 4-325 (325)
14 1goj_A Kinesin, kinesin heavy 100.0 7.4E-86 2.5E-90 720.9 30.1 333 391-730 4-340 (355)
15 2zfi_A Kinesin-like protein KI 100.0 1.5E-85 5.2E-90 721.5 29.3 330 392-724 3-359 (366)
16 1t5c_A CENP-E protein, centrom 100.0 7.4E-85 2.5E-89 711.5 32.0 325 392-730 3-338 (349)
17 2owm_A Nckin3-434, related to 100.0 3.4E-85 1.2E-89 733.4 28.6 349 387-742 32-436 (443)
18 1x88_A Kinesin-like protein KI 100.0 1.5E-85 5.2E-90 719.8 22.8 333 390-724 5-355 (359)
19 3nwn_A Kinesin-like protein KI 100.0 1.5E-84 5E-89 711.2 26.9 323 390-719 21-359 (359)
20 2wbe_C Bipolar kinesin KRP-130 100.0 9.3E-85 3.2E-89 716.5 23.9 335 389-728 19-369 (373)
21 4a14_A Kinesin, kinesin-like p 100.0 4E-84 1.4E-88 705.7 28.6 318 392-717 10-344 (344)
22 3gbj_A KIF13B protein; kinesin 100.0 4.7E-84 1.6E-88 706.8 28.8 321 394-718 2-349 (354)
23 1v8k_A Kinesin-like protein KI 100.0 1.9E-84 6.4E-89 718.5 24.7 345 368-721 47-404 (410)
24 2heh_A KIF2C protein; kinesin, 100.0 1.1E-84 3.6E-89 716.4 22.1 343 371-722 30-385 (387)
25 2nr8_A Kinesin-like protein KI 100.0 5.6E-84 1.9E-88 706.4 27.4 327 386-719 16-358 (358)
26 1ry6_A Internal kinesin; kines 100.0 1.2E-82 3.9E-87 696.4 26.1 325 394-724 1-336 (360)
27 3dc4_A Kinesin-like protein NO 100.0 3.1E-81 1.1E-85 681.4 27.6 313 390-723 19-339 (344)
28 4h1g_A Maltose binding protein 100.0 7.8E-79 2.7E-83 723.3 33.6 333 384-722 365-714 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 9.1E-35 3.1E-39 301.9 8.4 279 372-721 3-291 (298)
30 2l3g_A RHO guanine nucleotide 99.9 1.3E-27 4.4E-32 224.3 9.3 111 41-163 12-124 (126)
31 1h67_A Calponin alpha; cytoske 99.9 6.2E-28 2.1E-32 221.1 6.3 103 41-163 3-108 (108)
32 1wym_A Transgelin-2; CH domain 99.9 3.7E-27 1.3E-31 229.2 11.2 110 41-165 17-133 (155)
33 1p2x_A RNG2 protein, RAS GTPas 99.9 5.1E-27 1.7E-31 229.1 12.2 114 34-164 4-120 (159)
34 1wyr_A RHO guanine nucleotide 99.9 3.4E-27 1.2E-31 220.3 9.7 110 42-162 7-116 (121)
35 1ujo_A Transgelin; CH domain, 99.9 5.1E-27 1.7E-31 225.5 11.0 110 41-165 9-126 (144)
36 2kin_B Kinesin; motor protein, 99.9 1.2E-27 4E-32 215.0 5.5 83 646-729 2-85 (100)
37 2rr8_A Iqgap1 protein; F-actin 99.9 5.3E-27 1.8E-31 235.2 6.8 131 24-164 4-143 (190)
38 3i6x_A P195, RAS GTPase-activa 99.9 3.4E-26 1.2E-30 229.4 11.2 130 24-163 26-164 (193)
39 1wyp_A Calponin 1; CH domain, 99.9 1.5E-26 5E-31 220.2 7.9 103 42-164 18-123 (136)
40 1wyn_A Calponin-2; CH domain, 99.9 5.3E-26 1.8E-30 218.9 9.2 103 42-164 18-123 (146)
41 1p5s_A RAS GTPase-activating-l 99.9 1.1E-25 3.7E-30 227.6 11.7 107 41-164 55-164 (203)
42 3kin_B Kinesin heavy chain; mo 99.9 1E-25 3.5E-30 208.7 8.8 80 649-729 1-81 (117)
43 3ky9_A Proto-oncogene VAV; cal 99.8 1.8E-20 6.1E-25 218.0 11.3 116 45-170 9-132 (587)
44 2yrn_A Neuron navigator 2 isof 99.4 1.2E-12 4E-17 123.3 9.8 106 41-162 18-125 (129)
45 2qjz_A Microtubule-associated 99.1 1.7E-10 5.7E-15 107.3 9.5 102 43-166 7-111 (123)
46 1wyo_A Protein EB3, microtubul 99.1 3E-10 1E-14 109.7 8.8 103 42-166 23-128 (159)
47 1pxy_A Fimbrin-like protein; c 99.0 2.8E-10 9.7E-15 130.0 9.4 97 41-146 7-109 (506)
48 1aoa_A T-fimbrin; actin-bindin 99.0 7.5E-10 2.6E-14 117.0 9.0 107 41-158 24-136 (275)
49 1wku_A Alpha-actinin 3; calpon 98.9 1.5E-09 5.3E-14 113.4 6.6 100 41-159 27-128 (254)
50 1rt8_A Fimbrin; filamentous ac 98.8 6.2E-09 2.1E-13 119.1 8.2 112 41-159 12-130 (513)
51 2wa7_A Filamin-B; disease muta 98.7 9E-09 3.1E-13 107.0 5.5 102 41-160 20-124 (245)
52 1sh5_A Plectin 1, PLTN, PCN; a 98.6 7.7E-08 2.6E-12 99.9 8.0 107 40-161 11-119 (245)
53 1dxx_A Dystrophin; structural 98.6 5.8E-08 2E-12 100.9 6.9 100 40-158 15-116 (246)
54 3f7p_A Plectin-1; plakin, hemi 98.5 1E-07 3.4E-12 101.6 7.8 103 39-161 71-175 (296)
55 4etp_B Spindle POLE BODY-assoc 98.5 3.6E-06 1.2E-10 88.7 18.0 305 325-717 5-322 (333)
56 1rt8_A Fimbrin; filamentous ac 98.4 5.7E-07 1.9E-11 102.9 10.0 106 41-161 285-394 (513)
57 3hoc_A Filamin-A; calponin hom 98.2 1.1E-06 3.8E-11 92.5 6.9 101 43-161 49-152 (272)
58 2vzc_A Alpha-parvin; membrane, 98.1 3.3E-06 1.1E-10 79.5 6.4 102 37-156 18-123 (131)
59 1sjj_A Actinin; 3-helix bundle 98.1 2.3E-06 7.8E-11 103.4 6.5 101 42-161 9-111 (863)
60 1pxy_A Fimbrin-like protein; c 97.7 6.9E-05 2.4E-09 85.6 8.7 100 41-159 276-379 (506)
61 1wjo_A T-plastin; CH domain, a 97.5 0.00018 6.2E-09 66.8 8.1 100 43-156 9-113 (124)
62 4b7l_A Filamin-B; structural p 97.3 0.00033 1.1E-08 76.2 7.1 100 44-161 20-122 (347)
63 2d89_A EHBP1 protein; all alph 96.9 0.002 6.9E-08 59.4 7.3 97 43-158 11-110 (119)
64 1wyl_A NEDD9 interacting prote 96.8 0.0032 1.1E-07 57.8 8.2 97 42-157 8-106 (116)
65 1wyq_A Spectrin beta chain, br 96.2 0.0086 2.9E-07 55.8 7.3 96 43-157 9-107 (127)
66 1bkr_A Spectrin beta chain; fi 96.2 0.0075 2.6E-07 54.7 6.3 82 43-143 5-88 (109)
67 2d87_A Smoothelin splice isofo 96.1 0.0065 2.2E-07 56.7 5.9 99 43-160 9-111 (128)
68 2r8u_A Microtubule-associated 96.1 0.024 8.1E-07 59.1 10.5 102 43-166 17-121 (268)
69 1bhd_A Utrophin; calponin homo 95.9 0.0088 3E-07 55.0 5.4 95 43-156 10-107 (118)
70 2wa7_A Filamin-B; disease muta 95.8 0.01 3.5E-07 61.2 6.1 91 43-154 145-237 (245)
71 2d88_A Protein mical-3; all al 95.8 0.0098 3.3E-07 54.9 5.3 96 43-157 11-110 (121)
72 1wku_A Alpha-actinin 3; calpon 95.7 0.019 6.5E-07 59.6 7.8 96 43-157 142-241 (254)
73 4abo_I MAL3, microtubule integ 95.5 0.053 1.8E-06 51.3 9.2 102 42-166 7-111 (145)
74 1sh5_A Plectin 1, PLTN, PCN; a 95.5 0.015 5.3E-07 59.8 6.0 95 43-156 135-232 (245)
75 1aoa_A T-fimbrin; actin-bindin 95.4 0.025 8.6E-07 59.3 7.6 94 43-154 170-270 (275)
76 1dxx_A Dystrophin; structural 94.9 0.019 6.5E-07 59.2 4.6 97 43-157 137-236 (246)
77 3hoc_A Filamin-A; calponin hom 94.9 0.027 9.3E-07 59.1 5.8 81 43-144 172-254 (272)
78 2qjx_A Protein BIM1; calponin 94.6 0.13 4.4E-06 47.8 8.9 101 42-165 11-114 (127)
79 4b7l_A Filamin-B; structural p 94.6 0.047 1.6E-06 59.2 6.9 93 43-156 142-236 (347)
80 3ec2_A DNA replication protein 93.9 0.0081 2.8E-07 57.9 -0.8 51 437-487 6-56 (180)
81 3f7p_A Plectin-1; plakin, hemi 93.3 0.074 2.5E-06 56.4 5.3 94 43-155 191-287 (296)
82 2w58_A DNAI, primosome compone 92.6 0.027 9.1E-07 55.1 0.6 51 437-487 21-72 (202)
83 2qgz_A Helicase loader, putati 90.0 0.073 2.5E-06 56.5 0.8 51 438-488 121-171 (308)
84 4b4t_M 26S protease regulatory 89.9 1.7 5.7E-05 48.5 11.7 79 437-516 177-275 (434)
85 4b4t_K 26S protease regulatory 89.5 3 0.0001 46.3 13.4 79 437-516 168-266 (428)
86 1sjj_A Actinin; 3-helix bundle 89.2 0.21 7.1E-06 60.1 4.0 95 44-157 124-222 (863)
87 4gkp_A Spindle POLE BODY-assoc 88.8 2 6.7E-05 44.8 10.3 261 384-721 4-271 (275)
88 4b4t_L 26S protease subunit RP 86.4 1 3.6E-05 50.2 7.2 79 437-516 177-275 (437)
89 4b4t_J 26S protease regulatory 85.3 0.58 2E-05 51.7 4.3 78 438-516 145-242 (405)
90 3bos_A Putative DNA replicatio 83.3 0.32 1.1E-05 47.9 1.0 45 438-486 25-69 (242)
91 2bjv_A PSP operon transcriptio 82.9 0.3 1E-05 49.7 0.7 45 437-486 2-46 (265)
92 2ee7_A Sperm flagellar protein 82.5 2.3 7.9E-05 39.4 6.5 93 43-153 17-114 (127)
93 1jbk_A CLPB protein; beta barr 82.5 0.46 1.6E-05 44.5 1.8 30 457-486 31-60 (195)
94 1l8q_A Chromosomal replication 80.1 0.52 1.8E-05 49.5 1.4 49 437-487 7-55 (324)
95 3te6_A Regulatory protein SIR3 79.7 0.53 1.8E-05 50.3 1.3 30 457-486 32-62 (318)
96 2p65_A Hypothetical protein PF 79.5 0.53 1.8E-05 44.1 1.1 30 457-486 31-60 (187)
97 1d2n_A N-ethylmaleimide-sensit 79.2 0.83 2.8E-05 46.7 2.5 21 466-486 61-81 (272)
98 3syl_A Protein CBBX; photosynt 76.9 1.2 4E-05 46.1 2.9 21 466-486 64-84 (309)
99 2r62_A Cell division protease 76.1 0.62 2.1E-05 47.3 0.5 50 437-486 7-61 (268)
100 3uk6_A RUVB-like 2; hexameric 75.9 1.2 4.2E-05 47.2 2.8 47 437-487 40-88 (368)
101 4b4t_I 26S protease regulatory 74.8 13 0.00045 41.3 10.6 78 438-516 179-276 (437)
102 2kjq_A DNAA-related protein; s 74.7 0.58 2E-05 44.0 -0.2 17 471-487 38-54 (149)
103 1qde_A EIF4A, translation init 74.5 1.1 3.8E-05 43.9 1.9 25 459-485 43-67 (224)
104 1vec_A ATP-dependent RNA helic 73.8 1.4 4.8E-05 42.5 2.3 26 459-486 32-57 (206)
105 3co5_A Putative two-component 73.7 1.6 5.5E-05 40.2 2.6 36 452-488 11-46 (143)
106 2gxq_A Heat resistant RNA depe 73.4 1.3 4.3E-05 42.8 1.9 25 459-485 30-54 (207)
107 2z4s_A Chromosomal replication 73.3 1.1 3.6E-05 49.9 1.5 49 436-487 100-148 (440)
108 2qz4_A Paraplegin; AAA+, SPG7, 73.0 2.3 8E-05 42.5 3.8 44 439-486 4-56 (262)
109 2c9o_A RUVB-like 1; hexameric 72.9 1.6 5.5E-05 48.5 2.8 46 437-486 33-80 (456)
110 2v1u_A Cell division control p 72.7 0.62 2.1E-05 49.4 -0.6 39 448-486 22-61 (387)
111 3t15_A Ribulose bisphosphate c 71.3 1.3 4.5E-05 46.2 1.6 29 458-486 21-53 (293)
112 1g8p_A Magnesium-chelatase 38 71.3 1.2 4.1E-05 46.7 1.3 44 436-486 19-62 (350)
113 1fnn_A CDC6P, cell division co 71.2 1.1 3.9E-05 47.5 1.1 38 449-486 21-61 (389)
114 2chg_A Replication factor C sm 71.2 1.2 4.3E-05 42.5 1.2 34 450-486 22-55 (226)
115 1ixz_A ATP-dependent metallopr 71.1 0.96 3.3E-05 45.6 0.4 47 436-486 11-66 (254)
116 3dkp_A Probable ATP-dependent 70.9 1.5 5.3E-05 43.7 1.9 26 459-486 58-83 (245)
117 3h4m_A Proteasome-activating n 70.5 1.4 4.6E-05 45.1 1.4 50 437-486 13-68 (285)
118 3cf0_A Transitional endoplasmi 70.3 1 3.5E-05 47.0 0.5 49 438-486 12-66 (301)
119 1lv7_A FTSH; alpha/beta domain 69.9 2 6.8E-05 43.3 2.5 46 437-486 8-62 (257)
120 3bor_A Human initiation factor 69.7 1 3.5E-05 45.0 0.3 26 459-486 59-84 (237)
121 1p9r_A General secretion pathw 69.7 1.7 5.8E-05 48.1 2.1 28 459-486 157-184 (418)
122 2qby_B CDC6 homolog 3, cell di 69.6 2 6.8E-05 45.6 2.5 38 449-486 24-62 (384)
123 1sxj_C Activator 1 40 kDa subu 69.5 1.5 5E-05 46.5 1.4 41 439-486 23-63 (340)
124 2pl3_A Probable ATP-dependent 68.4 1.9 6.4E-05 42.8 1.9 26 459-486 54-79 (236)
125 3pfi_A Holliday junction ATP-d 67.0 2.7 9.3E-05 44.0 2.9 44 439-486 27-72 (338)
126 3jvv_A Twitching mobility prot 66.7 1.8 6E-05 46.9 1.4 27 460-486 114-140 (356)
127 1t6n_A Probable ATP-dependent 66.4 2.2 7.5E-05 41.7 1.9 26 459-486 43-68 (220)
128 1gvn_B Zeta; postsegregational 65.4 4.8 0.00016 41.9 4.4 38 449-486 8-50 (287)
129 1wrb_A DJVLGB; RNA helicase, D 65.2 2.3 7.9E-05 42.6 1.9 26 459-486 52-77 (253)
130 3iuy_A Probable ATP-dependent 64.9 3 0.0001 41.0 2.6 26 459-486 49-74 (228)
131 1njg_A DNA polymerase III subu 64.5 2.9 9.8E-05 40.3 2.3 34 450-486 28-62 (250)
132 3pvs_A Replication-associated 64.3 2.3 8E-05 47.3 1.8 39 448-486 29-67 (447)
133 1iqp_A RFCS; clamp loader, ext 63.7 3.3 0.00011 42.7 2.7 35 449-486 29-63 (327)
134 3n70_A Transport activator; si 63.7 3 0.0001 38.4 2.2 31 455-486 11-41 (145)
135 3b6e_A Interferon-induced heli 63.5 1.4 4.8E-05 42.5 -0.2 26 460-487 41-66 (216)
136 1hqc_A RUVB; extended AAA-ATPa 63.4 4.1 0.00014 42.1 3.4 44 439-486 10-55 (324)
137 1u0j_A DNA replication protein 63.2 3.7 0.00013 42.7 2.9 29 458-486 90-121 (267)
138 2oxc_A Probable ATP-dependent 62.7 2.8 9.5E-05 41.5 1.9 25 459-485 53-77 (230)
139 3fe2_A Probable ATP-dependent 62.7 2.5 8.5E-05 42.2 1.5 25 460-486 59-83 (242)
140 3llm_A ATP-dependent RNA helic 62.6 2.2 7.6E-05 42.6 1.2 27 458-486 67-93 (235)
141 3eiq_A Eukaryotic initiation f 62.5 3 0.0001 44.5 2.2 27 458-486 68-94 (414)
142 3ber_A Probable ATP-dependent 62.5 2.8 9.7E-05 42.3 1.9 26 459-486 72-97 (249)
143 4fcw_A Chaperone protein CLPB; 62.3 3.4 0.00012 42.5 2.5 38 449-486 21-64 (311)
144 3ly5_A ATP-dependent RNA helic 62.0 2.4 8.2E-05 43.2 1.3 25 459-485 83-107 (262)
145 3fmo_B ATP-dependent RNA helic 60.0 2.8 9.4E-05 43.9 1.3 28 459-486 121-148 (300)
146 2qby_A CDC6 homolog 1, cell di 59.7 1.5 5.2E-05 46.2 -0.8 37 450-486 25-62 (386)
147 1w5s_A Origin recognition comp 59.7 3 0.0001 44.6 1.6 33 454-486 31-69 (412)
148 3u61_B DNA polymerase accessor 58.8 3.8 0.00013 42.7 2.2 42 439-487 24-66 (324)
149 1tue_A Replication protein E1; 58.4 3.4 0.00012 41.5 1.6 28 460-487 47-76 (212)
150 1ofh_A ATP-dependent HSL prote 58.3 3.3 0.00011 42.3 1.6 18 469-486 50-67 (310)
151 1q0u_A Bstdead; DEAD protein, 57.6 2.1 7.2E-05 41.9 -0.1 24 460-485 34-57 (219)
152 1iy2_A ATP-dependent metallopr 57.1 3.6 0.00012 42.1 1.6 47 436-486 35-90 (278)
153 2eyu_A Twitching motility prot 57.1 3 0.0001 43.0 0.9 19 468-486 24-42 (261)
154 3b9p_A CG5977-PA, isoform A; A 56.7 3.8 0.00013 42.0 1.7 46 437-486 17-71 (297)
155 1jr3_A DNA polymerase III subu 56.0 5.3 0.00018 42.1 2.7 37 448-486 19-55 (373)
156 3d8b_A Fidgetin-like protein 1 55.7 3.9 0.00013 43.8 1.6 45 438-486 81-134 (357)
157 3cve_A Homer protein homolog 1 54.9 72 0.0024 26.5 8.7 60 317-376 8-67 (72)
158 3fht_A ATP-dependent RNA helic 54.7 4.2 0.00014 43.2 1.7 28 459-486 54-81 (412)
159 4b3f_X DNA-binding protein smu 54.7 3.7 0.00013 47.7 1.3 28 460-488 197-224 (646)
160 2x8a_A Nuclear valosin-contain 53.4 1.7 5.7E-05 45.0 -1.7 49 438-486 7-61 (274)
161 2fz4_A DNA repair protein RAD2 53.4 4.2 0.00014 40.9 1.3 26 460-487 101-126 (237)
162 1xwi_A SKD1 protein; VPS4B, AA 53.2 4.4 0.00015 42.8 1.5 72 438-513 9-103 (322)
163 3i00_A HIP-I, huntingtin-inter 52.7 68 0.0023 29.2 9.1 68 321-391 13-80 (120)
164 2z0m_A 337AA long hypothetical 52.5 5.1 0.00017 41.2 1.9 26 460-487 24-49 (337)
165 3pxg_A Negative regulator of g 52.3 6.8 0.00023 43.7 2.9 32 457-488 189-220 (468)
166 3pey_A ATP-dependent RNA helic 52.2 4.9 0.00017 42.3 1.7 28 459-486 34-61 (395)
167 1s2m_A Putative ATP-dependent 52.0 4.5 0.00015 43.0 1.3 26 459-486 50-75 (400)
168 3fmp_B ATP-dependent RNA helic 52.0 5.8 0.0002 43.7 2.3 27 459-485 121-147 (479)
169 2chq_A Replication factor C sm 51.5 2.6 8.9E-05 43.3 -0.6 34 450-486 22-55 (319)
170 1sxj_D Activator 1 41 kDa subu 51.1 4.1 0.00014 42.6 0.8 29 458-486 47-75 (353)
171 3h1t_A Type I site-specific re 51.1 5.6 0.00019 45.3 2.0 29 458-487 188-216 (590)
172 2j0s_A ATP-dependent RNA helic 51.1 6.7 0.00023 41.9 2.6 26 459-486 66-91 (410)
173 2oap_1 GSPE-2, type II secreti 50.3 5.3 0.00018 45.3 1.7 22 464-487 257-278 (511)
174 1in4_A RUVB, holliday junction 49.7 6.6 0.00023 41.5 2.2 44 439-486 23-68 (334)
175 1ojl_A Transcriptional regulat 49.3 6 0.0002 41.4 1.8 34 452-486 9-42 (304)
176 3eie_A Vacuolar protein sortin 49.1 6.8 0.00023 41.0 2.2 45 470-514 52-109 (322)
177 2ewv_A Twitching motility prot 48.5 3.8 0.00013 44.4 0.1 20 467-486 134-153 (372)
178 3oiy_A Reverse gyrase helicase 48.4 6.2 0.00021 42.4 1.8 25 459-485 28-52 (414)
179 1sxj_E Activator 1 40 kDa subu 47.7 2.9 9.8E-05 44.0 -1.0 15 472-486 39-53 (354)
180 3cvf_A Homer-3, homer protein 47.5 78 0.0027 26.8 8.0 61 318-378 15-75 (79)
181 1qvr_A CLPB protein; coiled co 47.4 3.9 0.00013 49.2 -0.1 43 439-488 168-210 (854)
182 4b4t_H 26S protease regulatory 46.9 12 0.00041 41.9 3.8 78 438-516 206-303 (467)
183 3b85_A Phosphate starvation-in 46.8 6.6 0.00023 38.9 1.5 25 460-486 15-39 (208)
184 3pxi_A Negative regulator of g 45.6 8.6 0.0003 45.4 2.6 38 449-486 495-538 (758)
185 3vfd_A Spastin; ATPase, microt 45.5 8.3 0.00028 41.5 2.2 46 437-486 111-165 (389)
186 2i4i_A ATP-dependent RNA helic 45.3 9.5 0.00033 40.6 2.6 26 459-486 44-69 (417)
187 3b9q_A Chloroplast SRP recepto 45.2 11 0.00039 39.5 3.1 17 470-486 101-117 (302)
188 1rif_A DAR protein, DNA helica 44.9 4.7 0.00016 41.2 0.1 25 461-487 122-146 (282)
189 1sxj_B Activator 1 37 kDa subu 44.5 5.9 0.0002 40.6 0.8 34 450-486 26-59 (323)
190 3fho_A ATP-dependent RNA helic 44.1 7.5 0.00026 43.5 1.6 25 461-485 150-174 (508)
191 2db3_A ATP-dependent RNA helic 43.9 10 0.00034 41.5 2.6 26 459-486 85-110 (434)
192 1n0w_A DNA repair protein RAD5 43.7 7 0.00024 38.4 1.2 28 459-486 11-41 (243)
193 2v1x_A ATP-dependent DNA helic 43.7 13 0.00043 42.9 3.4 26 459-486 51-76 (591)
194 1r6b_X CLPA protein; AAA+, N-t 43.6 11 0.00038 44.3 3.1 38 449-486 462-505 (758)
195 3e70_C DPA, signal recognition 43.5 11 0.00039 40.0 2.9 18 469-486 129-146 (328)
196 1sxj_A Activator 1 95 kDa subu 43.3 5.4 0.00018 45.0 0.3 44 439-486 37-94 (516)
197 3upu_A ATP-dependent DNA helic 43.2 6.7 0.00023 43.4 1.0 37 446-486 26-62 (459)
198 2r44_A Uncharacterized protein 43.2 5.1 0.00018 41.9 0.1 22 463-486 42-63 (331)
199 3hnw_A Uncharacterized protein 42.8 1.2E+02 0.004 28.3 9.3 15 250-264 29-43 (138)
200 2ce7_A Cell division protein F 42.7 11 0.00036 42.5 2.5 46 437-486 12-66 (476)
201 2p5t_B PEZT; postsegregational 42.6 16 0.00053 36.9 3.6 29 458-486 16-49 (253)
202 1r6b_X CLPA protein; AAA+, N-t 42.5 7.5 0.00025 45.9 1.3 32 457-488 195-226 (758)
203 3hws_A ATP-dependent CLP prote 42.3 8.4 0.00029 41.0 1.6 18 469-486 51-68 (363)
204 1qvr_A CLPB protein; coiled co 41.8 10 0.00035 45.6 2.4 38 449-486 562-605 (854)
205 3i5x_A ATP-dependent RNA helic 41.7 13 0.00044 41.8 3.1 27 459-485 101-127 (563)
206 3tbk_A RIG-I helicase domain; 41.7 9.3 0.00032 42.2 1.9 25 460-486 12-36 (555)
207 1um8_A ATP-dependent CLP prote 41.6 6.7 0.00023 41.9 0.7 18 469-486 72-89 (376)
208 4gp7_A Metallophosphoesterase; 41.1 5.7 0.0002 37.6 0.0 17 471-487 11-27 (171)
209 3lw7_A Adenylate kinase relate 40.6 7.6 0.00026 35.6 0.8 16 471-486 3-18 (179)
210 3lfu_A DNA helicase II; SF1 he 40.2 7.9 0.00027 44.4 1.0 36 452-487 5-40 (647)
211 1fuu_A Yeast initiation factor 40.0 5.6 0.00019 42.0 -0.3 26 459-486 50-75 (394)
212 1xti_A Probable ATP-dependent 39.9 12 0.00041 39.4 2.3 26 459-486 37-62 (391)
213 4a2p_A RIG-I, retinoic acid in 39.6 13 0.00044 41.2 2.6 26 459-486 14-39 (556)
214 1w36_D RECD, exodeoxyribonucle 39.5 9.1 0.00031 44.2 1.4 25 461-487 158-182 (608)
215 2dhr_A FTSH; AAA+ protein, hex 39.5 13 0.00045 41.9 2.7 46 437-486 27-81 (499)
216 3hu3_A Transitional endoplasmi 39.2 14 0.00048 41.5 2.9 50 437-486 200-255 (489)
217 1deq_A Fibrinogen (alpha chain 39.1 1.1E+02 0.0038 33.1 9.5 41 313-353 117-157 (390)
218 2gza_A Type IV secretion syste 39.1 8 0.00027 41.6 0.8 22 463-486 171-192 (361)
219 3ghg_A Fibrinogen alpha chain; 39.0 96 0.0033 35.0 9.2 48 312-359 113-160 (562)
220 2w0m_A SSO2452; RECA, SSPF, un 38.8 8.5 0.00029 37.2 0.9 27 460-486 11-40 (235)
221 3tnu_B Keratin, type II cytosk 38.5 1.7E+02 0.006 26.4 9.8 13 325-337 45-57 (129)
222 2og2_A Putative signal recogni 38.5 17 0.00058 39.3 3.2 17 470-486 158-174 (359)
223 2cvh_A DNA repair and recombin 38.5 9.5 0.00032 36.8 1.2 28 459-486 7-37 (220)
224 4a74_A DNA repair and recombin 38.0 11 0.00037 36.6 1.5 28 459-486 12-42 (231)
225 3o0z_A RHO-associated protein 37.7 2.5E+02 0.0084 27.0 10.8 20 370-389 109-128 (168)
226 1c4o_A DNA nucleotide excision 37.7 14 0.00048 43.1 2.6 41 444-488 7-47 (664)
227 2qp9_X Vacuolar protein sortin 37.7 12 0.00041 40.0 1.9 17 470-486 85-101 (355)
228 3vp9_A General transcriptional 37.5 1E+02 0.0034 26.9 7.3 46 321-366 41-86 (92)
229 2fwr_A DNA repair protein RAD2 37.3 10 0.00035 41.6 1.3 26 460-487 101-126 (472)
230 1hv8_A Putative ATP-dependent 37.0 9.7 0.00033 39.5 1.0 26 460-486 36-61 (367)
231 3tr0_A Guanylate kinase, GMP k 36.8 7.3 0.00025 37.3 0.0 16 471-486 9-24 (205)
232 2gk6_A Regulator of nonsense t 36.8 11 0.00038 43.6 1.5 17 471-487 197-213 (624)
233 2zan_A Vacuolar protein sortin 36.1 13 0.00043 41.1 1.8 46 437-486 130-184 (444)
234 3dm5_A SRP54, signal recogniti 36.0 17 0.00058 40.4 2.8 37 451-487 73-118 (443)
235 3tau_A Guanylate kinase, GMP k 36.0 8.9 0.0003 37.4 0.5 17 470-486 9-25 (208)
236 3c8u_A Fructokinase; YP_612366 35.8 13 0.00045 36.1 1.7 28 459-486 10-39 (208)
237 3kl4_A SRP54, signal recogniti 35.8 18 0.00062 40.1 3.0 19 469-487 97-115 (433)
238 2aze_A Transcription factor DP 35.4 58 0.002 31.0 5.9 31 356-386 20-50 (155)
239 2ykg_A Probable ATP-dependent 35.2 16 0.00055 42.2 2.6 25 459-485 20-44 (696)
240 1ly1_A Polynucleotide kinase; 35.0 10 0.00035 35.2 0.7 17 470-486 3-19 (181)
241 1rz3_A Hypothetical protein rb 34.8 12 0.00043 36.1 1.3 29 458-486 8-39 (201)
242 1zp6_A Hypothetical protein AT 34.5 8.3 0.00029 36.5 0.0 17 470-486 10-26 (191)
243 1kgd_A CASK, peripheral plasma 34.3 8.4 0.00029 36.6 -0.0 16 471-486 7-22 (180)
244 4gl2_A Interferon-induced heli 34.2 16 0.00056 42.1 2.4 26 459-486 14-39 (699)
245 2jlq_A Serine protease subunit 34.1 11 0.00039 41.5 1.0 25 460-485 11-35 (451)
246 2px0_A Flagellar biosynthesis 33.9 11 0.00038 39.4 0.8 17 471-487 107-123 (296)
247 1t3j_A Mitofusin 1; coiled coi 33.8 68 0.0023 28.1 5.7 45 333-377 32-76 (96)
248 2qnr_A Septin-2, protein NEDD5 33.6 9.2 0.00031 40.0 0.2 24 463-486 12-35 (301)
249 3sqw_A ATP-dependent RNA helic 33.6 20 0.0007 40.6 3.1 27 459-485 50-76 (579)
250 3trf_A Shikimate kinase, SK; a 33.4 11 0.00038 35.4 0.7 16 471-486 7-22 (185)
251 1qhx_A CPT, protein (chloramph 33.3 11 0.00039 35.0 0.7 17 470-486 4-20 (178)
252 3pxi_A Negative regulator of g 33.1 22 0.00074 41.9 3.3 31 458-488 190-220 (758)
253 2yhs_A FTSY, cell division pro 32.5 14 0.00048 41.8 1.4 17 470-486 294-310 (503)
254 1lkx_A Myosin IE heavy chain; 32.3 18 0.00061 42.6 2.3 34 453-486 77-111 (697)
255 4ag6_A VIRB4 ATPase, type IV s 31.8 8.8 0.0003 41.3 -0.4 16 471-486 37-52 (392)
256 1wix_A HOOK homolog 1, RSGI RU 31.6 87 0.003 29.9 6.7 22 72-93 30-51 (164)
257 3a00_A Guanylate kinase, GMP k 31.4 9 0.00031 36.6 -0.4 15 472-486 4-18 (186)
258 1ye8_A Protein THEP1, hypothet 31.4 10 0.00034 36.5 -0.0 15 472-486 3-17 (178)
259 3lnc_A Guanylate kinase, GMP k 31.0 13 0.00044 36.7 0.7 16 471-486 29-44 (231)
260 2qag_C Septin-7; cell cycle, c 31.0 9.8 0.00033 42.0 -0.2 23 464-486 26-48 (418)
261 3nbx_X ATPase RAVA; AAA+ ATPas 30.9 16 0.00055 41.2 1.6 27 459-487 33-59 (500)
262 1rj9_A FTSY, signal recognitio 30.8 12 0.0004 39.4 0.4 16 471-486 104-119 (304)
263 1w9i_A Myosin II heavy chain; 30.6 20 0.00067 42.7 2.3 34 453-486 155-189 (770)
264 2r8r_A Sensor protein; KDPD, P 30.6 9.8 0.00033 38.6 -0.2 20 469-488 6-25 (228)
265 1lvg_A Guanylate kinase, GMP k 30.6 9.8 0.00033 36.9 -0.2 16 471-486 6-21 (198)
266 2j41_A Guanylate kinase; GMP, 30.5 11 0.00037 36.0 0.0 16 471-486 8-23 (207)
267 1e9r_A Conjugal transfer prote 30.5 9.8 0.00034 41.5 -0.3 18 469-486 53-70 (437)
268 3sop_A Neuronal-specific septi 30.4 11 0.00037 38.8 0.1 19 468-486 1-19 (270)
269 2v26_A Myosin VI; calmodulin-b 30.3 20 0.00068 42.8 2.3 34 453-486 123-157 (784)
270 2bdt_A BH3686; alpha-beta prot 30.2 11 0.00037 35.8 -0.0 16 471-486 4-19 (189)
271 3iij_A Coilin-interacting nucl 30.1 13 0.00044 34.9 0.5 16 471-486 13-28 (180)
272 1wp9_A ATP-dependent RNA helic 29.8 14 0.00047 39.6 0.7 27 459-488 16-42 (494)
273 2ehv_A Hypothetical protein PH 29.6 11 0.00038 37.0 -0.0 17 471-487 32-48 (251)
274 2b8t_A Thymidine kinase; deoxy 29.6 9.7 0.00033 38.3 -0.5 20 469-488 12-31 (223)
275 2orw_A Thymidine kinase; TMTK, 29.5 9 0.00031 37.0 -0.7 18 471-488 5-22 (184)
276 3vaa_A Shikimate kinase, SK; s 29.1 15 0.00051 35.3 0.8 16 471-486 27-42 (199)
277 2wjy_A Regulator of nonsense t 28.9 18 0.0006 43.3 1.5 27 459-487 363-389 (800)
278 1uf9_A TT1252 protein; P-loop, 28.9 18 0.00061 34.3 1.3 21 466-486 5-25 (203)
279 1g8x_A Myosin II heavy chain f 28.9 21 0.00073 43.8 2.3 34 453-486 155-189 (1010)
280 2dr3_A UPF0273 protein PH0284; 28.8 20 0.00067 35.1 1.6 26 461-486 12-40 (247)
281 1w7j_A Myosin VA; motor protei 28.7 22 0.00075 42.5 2.3 34 453-486 139-173 (795)
282 1kht_A Adenylate kinase; phosp 28.5 16 0.00055 34.2 0.9 17 470-486 4-20 (192)
283 4a4z_A Antiviral helicase SKI2 28.5 25 0.00086 43.1 2.8 24 460-485 47-70 (997)
284 1kk8_A Myosin heavy chain, str 28.5 21 0.00071 43.0 2.0 34 453-486 152-186 (837)
285 2xzl_A ATP-dependent helicase 28.4 16 0.00056 43.6 1.1 27 459-487 367-393 (802)
286 4db1_A Myosin-7; S1DC, cardiac 28.3 23 0.00077 42.3 2.3 34 453-486 154-188 (783)
287 1znw_A Guanylate kinase, GMP k 28.2 12 0.00042 36.3 -0.0 22 463-486 16-37 (207)
288 1oyw_A RECQ helicase, ATP-depe 28.2 14 0.00048 41.7 0.5 26 459-486 32-57 (523)
289 2ycu_A Non muscle myosin 2C, a 28.1 23 0.00078 43.5 2.3 34 453-486 129-163 (995)
290 3e1s_A Exodeoxyribonuclease V, 28.0 18 0.0006 41.6 1.2 27 460-488 197-223 (574)
291 3kb2_A SPBC2 prophage-derived 27.9 16 0.00055 33.5 0.7 16 471-486 3-18 (173)
292 1gku_B Reverse gyrase, TOP-RG; 27.7 25 0.00085 43.3 2.6 24 459-484 63-86 (1054)
293 3cf2_A TER ATPase, transitiona 27.5 26 0.00089 41.9 2.6 78 437-514 200-296 (806)
294 1kag_A SKI, shikimate kinase I 27.5 15 0.00053 33.9 0.6 16 471-486 6-21 (173)
295 3ol1_A Vimentin; structural ge 27.4 1.6E+02 0.0056 26.4 7.4 41 324-364 77-117 (119)
296 1gm5_A RECG; helicase, replica 27.4 21 0.0007 42.6 1.7 39 445-486 368-406 (780)
297 2qen_A Walker-type ATPase; unk 27.3 18 0.00063 37.2 1.2 17 470-486 32-48 (350)
298 2ze6_A Isopentenyl transferase 27.0 17 0.00057 36.8 0.7 15 471-485 3-17 (253)
299 1j8m_F SRP54, signal recogniti 27.0 40 0.0014 35.1 3.7 17 471-487 100-116 (297)
300 2pt7_A CAG-ALFA; ATPase, prote 26.7 12 0.00041 39.7 -0.4 21 464-486 168-188 (330)
301 4anj_A Unconventional myosin-V 26.7 25 0.00085 43.4 2.3 34 453-486 127-161 (1052)
302 1a5t_A Delta prime, HOLB; zinc 26.7 26 0.00089 36.8 2.2 34 450-486 7-41 (334)
303 4a2w_A RIG-I, retinoic acid in 26.6 23 0.00077 43.1 1.9 26 460-487 256-281 (936)
304 1odf_A YGR205W, hypothetical 3 26.0 31 0.0011 35.9 2.6 20 467-486 29-48 (290)
305 3uie_A Adenylyl-sulfate kinase 26.0 26 0.00087 33.7 1.8 20 467-486 23-42 (200)
306 2i3b_A HCR-ntpase, human cance 25.8 13 0.00043 36.3 -0.4 16 471-486 3-18 (189)
307 3kta_A Chromosome segregation 25.7 14 0.00049 34.6 -0.0 16 471-486 28-43 (182)
308 2rhm_A Putative kinase; P-loop 25.7 18 0.00063 33.9 0.7 17 470-486 6-22 (193)
309 4a2q_A RIG-I, retinoic acid in 25.6 29 0.001 41.0 2.6 26 459-486 255-280 (797)
310 3cm0_A Adenylate kinase; ATP-b 25.4 19 0.00065 33.7 0.8 16 471-486 6-21 (186)
311 1tev_A UMP-CMP kinase; ploop, 25.4 19 0.00064 33.7 0.7 17 470-486 4-20 (196)
312 2v71_A Nuclear distribution pr 25.2 4.3E+02 0.015 25.8 10.4 25 366-390 131-155 (189)
313 1z6g_A Guanylate kinase; struc 25.0 13 0.00045 36.6 -0.4 15 472-486 26-40 (218)
314 1xx6_A Thymidine kinase; NESG, 25.0 11 0.00039 36.8 -0.9 18 471-488 10-27 (191)
315 2d7d_A Uvrabc system protein B 24.7 31 0.0011 40.2 2.5 47 438-488 5-51 (661)
316 1moz_A ARL1, ADP-ribosylation 24.7 20 0.00067 33.1 0.7 27 460-486 8-35 (183)
317 3oja_B Anopheles plasmodium-re 24.5 3.6E+02 0.012 30.1 11.4 9 386-394 576-584 (597)
318 2fna_A Conserved hypothetical 24.2 22 0.00074 36.6 1.0 20 465-486 28-47 (357)
319 2vli_A Antibiotic resistance p 24.2 24 0.0008 32.9 1.2 17 470-486 6-22 (183)
320 2qor_A Guanylate kinase; phosp 24.0 19 0.00067 34.6 0.6 16 471-486 14-29 (204)
321 2v6i_A RNA helicase; membrane, 23.9 26 0.0009 38.3 1.6 16 471-486 4-19 (431)
322 1nks_A Adenylate kinase; therm 23.9 21 0.00072 33.3 0.8 16 471-486 3-18 (194)
323 1y63_A LMAJ004144AAA protein; 23.8 20 0.00067 34.1 0.5 16 471-486 12-27 (184)
324 1knq_A Gluconate kinase; ALFA/ 23.7 22 0.00074 33.1 0.8 17 470-486 9-25 (175)
325 3iv1_A Tumor susceptibility ge 23.7 3.3E+02 0.011 22.9 8.5 53 320-376 15-67 (78)
326 2oca_A DAR protein, ATP-depend 23.6 20 0.00067 39.7 0.6 24 462-487 123-146 (510)
327 1x79_B RAB GTPase binding effe 23.6 2.9E+02 0.0098 24.8 8.0 62 322-393 37-98 (112)
328 2bbw_A Adenylate kinase 4, AK4 23.6 17 0.00058 36.2 -0.0 17 470-486 28-44 (246)
329 1e6c_A Shikimate kinase; phosp 23.2 20 0.0007 33.0 0.5 16 471-486 4-19 (173)
330 2yvu_A Probable adenylyl-sulfa 23.2 21 0.00072 33.7 0.6 18 469-486 13-30 (186)
331 1f2t_A RAD50 ABC-ATPase; DNA d 23.2 19 0.00066 33.4 0.3 16 471-486 25-40 (149)
332 1uaa_A REP helicase, protein ( 23.1 19 0.00065 41.7 0.3 20 468-487 14-33 (673)
333 1f6b_A SAR1; gtpases, N-termin 23.1 21 0.00072 34.1 0.6 30 457-486 12-42 (198)
334 2bwj_A Adenylate kinase 5; pho 22.6 23 0.00078 33.4 0.7 16 471-486 14-29 (199)
335 3asz_A Uridine kinase; cytidin 22.5 18 0.00062 34.8 -0.0 16 471-486 8-23 (211)
336 1vma_A Cell division protein F 22.4 22 0.00077 37.3 0.7 17 470-486 105-121 (306)
337 4eun_A Thermoresistant glucoki 22.3 19 0.00064 34.7 0.0 17 470-486 30-46 (200)
338 3rc3_A ATP-dependent RNA helic 22.2 21 0.00073 41.8 0.5 21 463-485 151-171 (677)
339 1via_A Shikimate kinase; struc 22.0 23 0.00078 33.1 0.6 16 471-486 6-21 (175)
340 2iyv_A Shikimate kinase, SK; t 21.9 22 0.00077 33.3 0.5 15 471-485 4-18 (184)
341 1htw_A HI0065; nucleotide-bind 21.6 20 0.00067 33.9 -0.0 18 470-487 34-51 (158)
342 1s96_A Guanylate kinase, GMP k 21.5 20 0.00068 35.6 0.0 16 471-486 18-33 (219)
343 3tif_A Uncharacterized ABC tra 21.4 20 0.00068 36.0 -0.0 16 471-486 33-48 (235)
344 3t61_A Gluconokinase; PSI-biol 21.4 24 0.00081 33.8 0.6 18 469-486 18-35 (202)
345 2v3c_C SRP54, signal recogniti 21.4 49 0.0017 36.5 3.2 18 470-487 100-117 (432)
346 2ged_A SR-beta, signal recogni 21.4 25 0.00087 32.8 0.8 36 451-486 27-65 (193)
347 2c95_A Adenylate kinase 1; tra 21.3 25 0.00086 33.0 0.7 17 470-486 10-26 (196)
348 3l9o_A ATP-dependent RNA helic 21.3 30 0.001 43.0 1.5 24 460-485 192-215 (1108)
349 2pt5_A Shikimate kinase, SK; a 21.2 26 0.00089 32.2 0.8 16 471-486 2-17 (168)
350 3t5d_A Septin-7; GTP-binding p 21.2 21 0.00071 36.4 0.1 21 466-486 5-25 (274)
351 2cdn_A Adenylate kinase; phosp 21.2 30 0.001 33.0 1.2 20 467-486 18-37 (201)
352 2p6r_A Afuhel308 helicase; pro 21.1 21 0.00073 41.5 0.2 23 462-486 35-57 (702)
353 1qf9_A UMP/CMP kinase, protein 21.0 26 0.00088 32.7 0.7 16 471-486 8-23 (194)
354 4ddu_A Reverse gyrase; topoiso 21.0 36 0.0012 42.2 2.2 25 459-485 85-109 (1104)
355 1v5w_A DMC1, meiotic recombina 20.9 41 0.0014 35.6 2.3 29 459-487 109-140 (343)
356 3umf_A Adenylate kinase; rossm 20.7 25 0.00086 35.1 0.6 35 471-509 31-65 (217)
357 2zj8_A DNA helicase, putative 20.7 22 0.00074 41.6 0.1 21 464-486 36-56 (720)
358 2r2a_A Uncharacterized protein 20.7 24 0.00084 34.6 0.5 16 471-486 7-22 (199)
359 3crm_A TRNA delta(2)-isopenten 20.6 27 0.00091 37.2 0.8 16 470-485 6-21 (323)
360 2z83_A Helicase/nucleoside tri 20.6 31 0.0011 38.0 1.4 14 472-485 24-37 (459)
361 2i1q_A DNA repair and recombin 20.6 40 0.0014 35.0 2.2 28 459-486 85-115 (322)
362 2xdj_A Uncharacterized protein 20.6 3.1E+02 0.011 23.2 7.3 37 321-357 25-61 (83)
363 1ukz_A Uridylate kinase; trans 20.5 27 0.00092 33.3 0.7 17 470-486 16-32 (203)
364 1yks_A Genome polyprotein [con 20.5 31 0.0011 37.8 1.4 21 464-486 5-25 (440)
365 1zd8_A GTP:AMP phosphotransfer 20.5 25 0.00085 34.5 0.5 17 470-486 8-24 (227)
366 3a4m_A L-seryl-tRNA(SEC) kinas 20.4 27 0.00091 35.3 0.7 17 470-486 5-21 (260)
367 3sr0_A Adenylate kinase; phosp 20.3 25 0.00087 34.6 0.5 34 472-509 3-36 (206)
368 3nmd_A CGMP dependent protein 20.1 3.6E+02 0.012 22.3 7.3 32 318-349 28-59 (72)
369 4dzn_A Coiled-coil peptide CC- 20.0 2.1E+02 0.0073 19.4 5.0 21 328-348 7-27 (33)
No 1
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=8.8e-92 Score=780.21 Aligned_cols=348 Identities=40% Similarity=0.642 Sum_probs=293.6
Q ss_pred hhHHHHHHhhhhhhhhccCCCEEEEEEeCCCCCCCCCCCcce-eeecCCeEEEeCCCCCCC---CceEEEcceecCCCCC
Q 004272 374 YHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTV-DHIEEGNITINTPSKHGK---GWKSFSFNKVYGPSAT 449 (764)
Q Consensus 374 ~~~~~~e~r~l~n~~~~lkg~IrV~~RVRP~~~~e~~~~~~i-~~~~~~~i~i~~p~~~g~---~~~~F~FD~VF~~~at 449 (764)
+++...+||+|||+++|++|||||||||||+.+.|.....+. ...++.++.+..+....+ +.+.|.||+||+|+++
T Consensus 40 l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~ 119 (412)
T 3u06_A 40 LFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 119 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCC
Confidence 344556899999999999999999999999998876544443 344667777765443222 3578999999999999
Q ss_pred hHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhc-cceEEEEEEEEEE
Q 004272 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK-DIFRYDVAVQMLE 528 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~-~~~~~~V~vS~~E 528 (764)
|++||+.+.|+|+++++|||+||||||||||||||||+|+ ++++|||||++++||..+.... ..+.|.|+|||+|
T Consensus 120 Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~----~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 195 (412)
T 3u06_A 120 QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLE 195 (412)
T ss_dssp HHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEE----TTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCC----CCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEE
Confidence 9999999999999999999999999999999999999995 4578999999999999887643 5689999999999
Q ss_pred EeCCeeeeccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEe
Q 004272 529 IYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQG 608 (764)
Q Consensus 529 IYnE~V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~ 608 (764)
||||+|+|||.+......+.+.+++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|.+|||||+||+|+|.+
T Consensus 196 IYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~ 275 (412)
T 3u06_A 196 IYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIG 275 (412)
T ss_dssp EETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEE
T ss_pred EeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEE
Confidence 99999999997765555566667788899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCc
Q 004272 609 KDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQA 688 (764)
Q Consensus 609 ~~~~~~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGns 688 (764)
.+...+....|+|+|||||||||.. +|.|++|+.+||+||++||+||.||++++.||||||||||+||||+|||||
T Consensus 276 ~~~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGns 351 (412)
T 3u06_A 276 RHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 351 (412)
T ss_dssp EETTTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTC
T ss_pred EeCCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCc
Confidence 9888888899999999999999974 468999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCcccccCC
Q 004272 689 KTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNKD 729 (764)
Q Consensus 689 kt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~ 729 (764)
+|+||+||||+..+++||++||+||+||++|++++++.|..
T Consensus 352 kt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~~ 392 (412)
T 3u06_A 352 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRY 392 (412)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--------
T ss_pred eEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999999987764
No 2
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-91 Score=776.85 Aligned_cols=345 Identities=41% Similarity=0.664 Sum_probs=294.2
Q ss_pred hhhHHHHHHhhhhhhhhccCCCEEEEEEeCCCCCC-CCCCCcc--eeeecC--C--eEEEeCCCCCCCCceEEEcceecC
Q 004272 373 GYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSG-QSNYLST--VDHIEE--G--NITINTPSKHGKGWKSFSFNKVYG 445 (764)
Q Consensus 373 ~~~~~~~e~r~l~n~~~~lkg~IrV~~RVRP~~~~-e~~~~~~--i~~~~~--~--~i~i~~p~~~g~~~~~F~FD~VF~ 445 (764)
.|.+...+||+|||++||+||||||||||||+.+. +...... +...++ + .+.+..+. .....+.|.||+||+
T Consensus 39 ~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~F~FD~VF~ 117 (403)
T 4etp_A 39 ILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ-NTAQVHEFKFDKIFD 117 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECS-SSCEEEEEEESEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCC-CCcCceEEEcCEEEC
Confidence 34455568999999999999999999999999876 3222222 222222 1 33443322 222468899999999
Q ss_pred CCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh-ccceEEEEEE
Q 004272 446 PSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-KDIFRYDVAV 524 (764)
Q Consensus 446 ~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~-~~~~~~~V~v 524 (764)
++++|++||+++.|+|+++++|||+||||||||||||||||+|+ .+|||||++++||..++.. ...+.|.|+|
T Consensus 118 ~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~------~~Giipr~~~~lF~~i~~~~~~~~~~~v~v 191 (403)
T 4etp_A 118 QQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYKVNA 191 (403)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT------TTSHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred CCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC------CCccchhHHHHHHHHHHhhhccCceEEEEE
Confidence 99999999999999999999999999999999999999999995 3599999999999988764 4568999999
Q ss_pred EEEEEeCCeeeeccCCCC-------CCCceeEeecCC-CCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCC
Q 004272 525 QMLEIYNEQVRDLLVTDG-------SNRRLEIRNSSQ-TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSS 596 (764)
Q Consensus 525 S~~EIYnE~V~DLL~~~~-------~~~~l~ir~~~~-~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SS 596 (764)
||+|||||+|+|||.+.. ....+.+++++. ++++|.|++++.|.|++|++.+|..|.++|++++|.+|.+||
T Consensus 192 S~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SS 271 (403)
T 4etp_A 192 EFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSS 271 (403)
T ss_dssp EEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHH
T ss_pred EEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccC
Confidence 999999999999998764 234677887764 578999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeeecCCCceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCC---CCCCCC
Q 004272 597 RSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNP---HVPYRN 673 (764)
Q Consensus 597 RSH~ifti~v~~~~~~~~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~---hiPYR~ 673 (764)
|||+||+|+|.+.+...+....|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++++. ||||||
T Consensus 272 RSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRd 351 (403)
T 4etp_A 272 RSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRN 351 (403)
T ss_dssp TSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGG
T ss_pred CcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCccc
Confidence 99999999999999888888999999999999999999999999999999999999999999999987654 999999
Q ss_pred ChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCcc
Q 004272 674 SKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAA 724 (764)
Q Consensus 674 SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~ 724 (764)
||||+||||+|||||+|+||+||||+..+++||++||+||+||++|++++-
T Consensus 352 SkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 352 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp SHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred chHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999999999999999999999999863
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=4.5e-91 Score=764.62 Aligned_cols=357 Identities=39% Similarity=0.636 Sum_probs=315.0
Q ss_pred hccCCCEEEEEEeCCCCCCCCCCCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhhHHHHHHHHCCC
Q 004272 389 QDLKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGY 468 (764)
Q Consensus 389 ~~lkg~IrV~~RVRP~~~~e~~~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~ 468 (764)
+|++|+|||+|||||+.+.|.....++.....+.+++..|...+ ..+.|.||+||+++++|++||+++.|+|+++++||
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~-~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G~ 79 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDD-KAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGY 79 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTS-CEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTC
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCC-CceEEecCEEECCCCCcceehhhhhhhhHhhhcCC
Confidence 68999999999999998766432222222223444444433332 35899999999999999999999999999999999
Q ss_pred CeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCC-CCce
Q 004272 469 NVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGS-NRRL 547 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~-~~~l 547 (764)
|+||||||||||||||||+|++ .++||+||++++||..++.....+.|.|++||+|||||+|+|||.+... ...+
T Consensus 80 n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l 155 (369)
T 3cob_A 80 NVCIFAYGQTGSGKTFTIYGAD----SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 155 (369)
T ss_dssp EEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCC
T ss_pred ceEEEEECCCCCCCeEeecCCC----CCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcce
Confidence 9999999999999999999954 5789999999999999988777799999999999999999999987643 4689
Q ss_pred eEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecC
Q 004272 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627 (764)
Q Consensus 548 ~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLA 627 (764)
.|++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|.+|||||+||+|+|.+.+...+....|+|+|||||
T Consensus 156 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 235 (369)
T 3cob_A 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLA 235 (369)
T ss_dssp EEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECC
T ss_pred EEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred CCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHH
Q 004272 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETI 707 (764)
Q Consensus 628 GSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl 707 (764)
||||..+++++|.|++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||+||||+..+++||+
T Consensus 236 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 315 (369)
T 3cob_A 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 315 (369)
T ss_dssp CSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCcccccCCchHHHHHHHHHHHHHHHhhhhh
Q 004272 708 STLKFAERVATVELGAARVNKDSSDVKELKEQVLTLSVTVISIE 751 (764)
Q Consensus 708 sTL~FA~r~~~v~~g~~~~n~~~~~v~~L~~ei~~Lk~~l~~~~ 751 (764)
+||+||+|++.|++++ .+|.++.++.+|+.+++.|+..+....
T Consensus 316 ~TLrfA~rak~i~~~~-~~n~~~~ei~~L~~~l~~~~~~~~~~~ 358 (369)
T 3cob_A 316 NSLTYASRVRSIVNDP-SKNVSSKEVARLKKLVSYWKEQAGRKG 358 (369)
T ss_dssp HHHHHHHHHHTCBCCC-CCCEECHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHhhcccCC-cccCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999864 577777889999999988888766543
No 4
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-89 Score=753.78 Aligned_cols=339 Identities=44% Similarity=0.681 Sum_probs=261.9
Q ss_pred HhhhhhhhhccCCCEEEEEEeCCCCCCCCCCCc-cee--e------ecCCeEEEeCCCCC---------CCCceEEEcce
Q 004272 381 NRKLYNQVQDLKGSIRVYCRVRPFLSGQSNYLS-TVD--H------IEEGNITINTPSKH---------GKGWKSFSFNK 442 (764)
Q Consensus 381 ~r~l~n~~~~lkg~IrV~~RVRP~~~~e~~~~~-~i~--~------~~~~~i~i~~p~~~---------g~~~~~F~FD~ 442 (764)
.-+|||++++++|||||||||||+.+.|..... .+. . .++..+.+..|... ....+.|.||+
T Consensus 10 ~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 89 (376)
T 2rep_A 10 HSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDR 89 (376)
T ss_dssp -------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSE
T ss_pred cccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecE
Confidence 467999999999999999999999988865322 111 1 23445555543210 11346899999
Q ss_pred ecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhc-cceEEE
Q 004272 443 VYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK-DIFRYD 521 (764)
Q Consensus 443 VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~-~~~~~~ 521 (764)
||+++++|++||+++.|+|+++|+|||+||||||||||||||||+|++...+..+|||||++++||..++... ..+.|.
T Consensus 90 Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~ 169 (376)
T 2rep_A 90 VFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYS 169 (376)
T ss_dssp EECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEE
T ss_pred EcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999876556789999999999999887644 568999
Q ss_pred EEEEEEEEeCCeeeeccCCCC---CCCceeEeec--CCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCC
Q 004272 522 VAVQMLEIYNEQVRDLLVTDG---SNRRLEIRNS--SQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSS 596 (764)
Q Consensus 522 V~vS~~EIYnE~V~DLL~~~~---~~~~l~ir~~--~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SS 596 (764)
|++||+|||||+|+|||.+.. ....+.++++ +.++++|.|+++++|.|++|++.+|..|.++|++++|.||.+||
T Consensus 170 v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SS 249 (376)
T 2rep_A 170 FVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSS 249 (376)
T ss_dssp EEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGG
T ss_pred EEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCC
Confidence 999999999999999998752 2356888888 56899999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeeecCCCceEEEEEEEEecCCCcCccccCCch----hhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCC
Q 004272 597 RSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSEVTG----DRLKEAQHINRSLSALGDVIASLAQKNPHVPYR 672 (764)
Q Consensus 597 RSH~ifti~v~~~~~~~~~~~~s~L~lVDLAGSEr~~~s~~~g----~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR 672 (764)
|||+||+|+|.+.+...+....|+|+|||||||||.++++++| +|++|+.+||+||++||+||.||++++.|||||
T Consensus 250 RSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYR 329 (376)
T 2rep_A 250 RSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYR 329 (376)
T ss_dssp GSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGG
T ss_pred CceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCc
Confidence 9999999999998887888889999999999999999999999 999999999999999999999999999999999
Q ss_pred CChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 004272 673 NSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719 (764)
Q Consensus 673 ~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v 719 (764)
|||||+||||+||||++|+||+||||+..+++||++||+||+||++|
T Consensus 330 dSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 330 NSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp GSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999875
No 5
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=8.3e-88 Score=735.60 Aligned_cols=327 Identities=43% Similarity=0.730 Sum_probs=266.9
Q ss_pred ccCCCEEEEEEeCCCCCCCCCCCcc--eeeec--CC--eEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhhHHHHHH
Q 004272 390 DLKGSIRVYCRVRPFLSGQSNYLST--VDHIE--EG--NITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDMQPLIRS 463 (764)
Q Consensus 390 ~lkg~IrV~~RVRP~~~~e~~~~~~--i~~~~--~~--~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v~plV~s 463 (764)
+|||||||||||||+.+.|...... +...+ ++ .+.+..+.. ....+.|.||+||+++++|++||+++.|+|++
T Consensus 2 ~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~ 80 (349)
T 3t0q_A 2 ALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG-RILSYNFQFDMIFEPSHTNKEIFEEIRQLVQS 80 (349)
T ss_dssp ---CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC---CEEEEEEESEEECTTCCHHHHHHHHHHHHHG
T ss_pred CCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC-cccceeeecCEEECCCccHHHHHHHHHHHHHH
Confidence 6899999999999999887654332 22222 22 344443321 12467899999999999999999999999999
Q ss_pred HHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh-ccceEEEEEEEEEEEeCCeeeeccCCCC
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-KDIFRYDVAVQMLEIYNEQVRDLLVTDG 542 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~-~~~~~~~V~vS~~EIYnE~V~DLL~~~~ 542 (764)
+++|||+||||||||||||||||+|+ .+|||||++++||..++.. ...+.|.|++||+|||||+|+|||.+..
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~------~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 154 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNA------GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFK 154 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCC------CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccc
Confidence 99999999999999999999999995 3599999999999988764 3568999999999999999999997654
Q ss_pred ---------CCCceeEeecCC-CCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC
Q 004272 543 ---------SNRRLEIRNSSQ-TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT 612 (764)
Q Consensus 543 ---------~~~~l~ir~~~~-~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~ 612 (764)
....+.|++++. +|++|.|++++.|.|++|++.+|..|.++|++++|.+|++|||||+||+|+|.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 234 (349)
T 3t0q_A 155 SHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLH 234 (349)
T ss_dssp ------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETT
T ss_pred cccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecC
Confidence 245678887764 5799999999999999999999999999999999999999999999999999999988
Q ss_pred CCceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC---CCCCCCCChhhHHhhhccCCCcc
Q 004272 613 SGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN---PHVPYRNSKLTQLLQDSLGGQAK 689 (764)
Q Consensus 613 ~~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~---~hiPYR~SKLT~LLqdsLgGnsk 689 (764)
.+....|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+
T Consensus 235 ~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnsk 314 (349)
T 3t0q_A 235 TGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSK 314 (349)
T ss_dssp TCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCE
T ss_pred CCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCce
Confidence 888999999999999999999999999999999999999999999999998755 49999999999999999999999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCc
Q 004272 690 TLMFVHISPEPDAVGETISTLKFAERVATVELGA 723 (764)
Q Consensus 690 t~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~ 723 (764)
|+||+||||+..+++||++||+||+||+.|++++
T Consensus 315 t~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 315 TLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999999999874
No 6
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.7e-87 Score=723.60 Aligned_cols=324 Identities=47% Similarity=0.705 Sum_probs=279.0
Q ss_pred ccCCCEEEEEEeCCCCCCCCCCC--cceeee--cC-CeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhhHHHHHHH
Q 004272 390 DLKGSIRVYCRVRPFLSGQSNYL--STVDHI--EE-GNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDMQPLIRSV 464 (764)
Q Consensus 390 ~lkg~IrV~~RVRP~~~~e~~~~--~~i~~~--~~-~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v~plV~sv 464 (764)
+++|+|||+|||||+.+.|.... ..+..+ ++ ..+.+... ...+.|.||+||+++++|++||+++.|+|+++
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~ 76 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK----GKPVSFELDKVFSPQASQQDVFQEVQALVTSC 76 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET----TEEEEEECSEEECTTCCHHHHHTTTHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC----CCeeEEecCeEeCCCCCcHhHHHHHHHHHHHH
Confidence 57999999999999988765321 122222 22 33333321 13578999999999999999999999999999
Q ss_pred HCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCC-
Q 004272 465 LDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGS- 543 (764)
Q Consensus 465 l~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~- 543 (764)
++|||+||||||||||||||||+|+ +.++||+||++++||..++.....+.|.|+|||+|||||+|+|||.+...
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~----~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 152 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGT----AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE 152 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCC
T ss_pred hCCCEEEEEeECCCCCCCcEEEecC----CCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccc
Confidence 9999999999999999999999995 45789999999999999988777889999999999999999999976532
Q ss_pred CCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEE
Q 004272 544 NRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHL 623 (764)
Q Consensus 544 ~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~l 623 (764)
...+.+++++.++++|.|+++++|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|.+.+...+....|+|+|
T Consensus 153 ~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~l 232 (330)
T 2h58_A 153 KLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNL 232 (330)
T ss_dssp CCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred cceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEE
Confidence 22344446778899999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCH
Q 004272 624 VDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAV 703 (764)
Q Consensus 624 VDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~ 703 (764)
||||||||..+++++|.|++|+.+||+||++||+||.||++++.||||||||||+||||+||||++|+||+||||+..++
T Consensus 233 VDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~ 312 (330)
T 2h58_A 233 VDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNT 312 (330)
T ss_dssp EECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGH
T ss_pred EeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccc
Q 004272 704 GETISTLKFAERVATVEL 721 (764)
Q Consensus 704 ~ETlsTL~FA~r~~~v~~ 721 (764)
+||++||+||+|+++|++
T Consensus 313 ~ETl~TL~fA~rak~i~~ 330 (330)
T 2h58_A 313 SETLYSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhCcC
Confidence 999999999999999874
No 7
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.2e-86 Score=725.68 Aligned_cols=327 Identities=42% Similarity=0.697 Sum_probs=272.7
Q ss_pred cCCCEEEEEEeCCCCC-CCCCCCccee--eec--CC--eEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhhHHHHHH
Q 004272 391 LKGSIRVYCRVRPFLS-GQSNYLSTVD--HIE--EG--NITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDMQPLIRS 463 (764)
Q Consensus 391 lkg~IrV~~RVRP~~~-~e~~~~~~i~--~~~--~~--~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v~plV~s 463 (764)
|||||||||||||+.+ .|......+. ..+ ++ .+.+..+.. ....+.|.||+||+++++|++||+++.|+|++
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~ 79 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN-TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQS 79 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGG-TTCEEEEEESEEECTTCCHHHHHHHHHHHHGG
T ss_pred CCCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCC-CcCceEEeeCEEECCCCCHHHHHHHHHHHHHH
Confidence 6899999999999987 3422222221 111 12 355544322 22468999999999999999999999999999
Q ss_pred HHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhc-cceEEEEEEEEEEEeCCeeeeccCCCC
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK-DIFRYDVAVQMLEIYNEQVRDLLVTDG 542 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~-~~~~~~V~vS~~EIYnE~V~DLL~~~~ 542 (764)
+++|||+||||||||||||||||+|+ ++|||||++++||..++... ..+.|.|+|||+|||||+|+|||.+..
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTM~G~------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 153 (347)
T 1f9v_A 80 SLDGYNVCIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN 153 (347)
T ss_dssp GGGTCCEEEEEECCTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC---
T ss_pred hcCCceeEEEEECCCCCCCcEeccCC------CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcc
Confidence 99999999999999999999999995 36999999999999887644 468999999999999999999998764
Q ss_pred C-------CCceeEeecC-CCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCC
Q 004272 543 S-------NRRLEIRNSS-QTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG 614 (764)
Q Consensus 543 ~-------~~~l~ir~~~-~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~ 614 (764)
. ...+.|++++ .++++|.|++++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|+|.+.+...+
T Consensus 154 ~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 233 (347)
T 1f9v_A 154 NNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTG 233 (347)
T ss_dssp ----------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--C
T ss_pred ccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCC
Confidence 4 2457888765 5689999999999999999999999999999999999999999999999999999887778
Q ss_pred ceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC---CCCCCCCChhhHHhhhccCCCccEE
Q 004272 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN---PHVPYRNSKLTQLLQDSLGGQAKTL 691 (764)
Q Consensus 615 ~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~---~hiPYR~SKLT~LLqdsLgGnskt~ 691 (764)
....|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+|+
T Consensus 234 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~ 313 (347)
T 1f9v_A 234 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 313 (347)
T ss_dssp CEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEE
T ss_pred ceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEE
Confidence 8889999999999999999999999999999999999999999999999876 8999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhcccccCcc
Q 004272 692 MFVHISPEPDAVGETISTLKFAERVATVELGAA 724 (764)
Q Consensus 692 mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~ 724 (764)
||+||||+..+++||++||+||+||++|++++.
T Consensus 314 mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 314 MFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999999998863
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.3e-86 Score=725.10 Aligned_cols=332 Identities=39% Similarity=0.628 Sum_probs=269.5
Q ss_pred CCCEEEEEEeCCCCCCCCC--CCcceeee-cCCeEEEeCCCC------CCCCceEEEcceecCCCCChHhHHhh-hHHHH
Q 004272 392 KGSIRVYCRVRPFLSGQSN--YLSTVDHI-EEGNITINTPSK------HGKGWKSFSFNKVYGPSATQAEVFSD-MQPLI 461 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~--~~~~i~~~-~~~~i~i~~p~~------~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV 461 (764)
.++|||+|||||+.+.|.. ...++... +++++.+..|.. .....+.|.||+||+++++|++||+. +.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 5899999999999876642 22233322 346777776542 12246899999999999999999998 59999
Q ss_pred HHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCC
Q 004272 462 RSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTD 541 (764)
Q Consensus 462 ~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~ 541 (764)
+++++|||+||||||||||||||||+|++ .++||+||++++||..++.....+.|.|++||+|||||+|+|||.+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~- 157 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNK----EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN- 157 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCC----ccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-
Confidence 99999999999999999999999999954 5789999999999999987777889999999999999999999963
Q ss_pred CCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCC--ceEEE
Q 004272 542 GSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG--TMYRG 619 (764)
Q Consensus 542 ~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~--~~~~s 619 (764)
...+.|++++.+|++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|++.+...+ ....|
T Consensus 158 --~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~s 235 (350)
T 2vvg_A 158 --NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVG 235 (350)
T ss_dssp --EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEE
T ss_pred --CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999998765443 35789
Q ss_pred EEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCC
Q 004272 620 CMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPE 699 (764)
Q Consensus 620 ~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~ 699 (764)
+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||+||||+
T Consensus 236 kl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~ 315 (350)
T 2vvg_A 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPA 315 (350)
T ss_dssp EEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCB
T ss_pred EEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccCcccccCCch
Q 004272 700 PDAVGETISTLKFAERVATVELGAARVNKDSS 731 (764)
Q Consensus 700 ~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~~~ 731 (764)
..+++||++||+||+|++.|++. +++|.++.
T Consensus 316 ~~~~~ETl~TL~fA~rak~i~n~-~~~n~~~~ 346 (350)
T 2vvg_A 316 STNYDETMSTLRYADRAKQIKNK-PRINEDPK 346 (350)
T ss_dssp GGGHHHHHHHHHHHHHHTTCBCC-CCCCBSCT
T ss_pred cccHHHHHHHHHHHHHHhhcccc-ceecCCch
Confidence 99999999999999999999975 45676653
No 9
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1e-86 Score=729.74 Aligned_cols=343 Identities=37% Similarity=0.553 Sum_probs=282.3
Q ss_pred ccCCCEEEEEEeCCCCCCCCCC-Ccceeeec----CCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhh-HHHHHH
Q 004272 390 DLKGSIRVYCRVRPFLSGQSNY-LSTVDHIE----EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRS 463 (764)
Q Consensus 390 ~lkg~IrV~~RVRP~~~~e~~~-~~~i~~~~----~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~s 463 (764)
+.+++|||+|||||+.+.|... ...+..+. +..+.+ ..+.|.||+||+++++|++||+++ .|+|++
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~--------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 79 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI--------AGKVYLFDKVFKPNASQEKVYNEAAKSIVTD 79 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE--------TTEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE--------CCEEEeCceEecCCCCHHHHHHHhhhhHHHH
Confidence 4579999999999998776432 12222222 233333 247899999999999999999985 999999
Q ss_pred HHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCC
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGS 543 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~ 543 (764)
+++|||+||||||||||||||||+|+.+ .+..+||+||++++||..+......+.|.|++||+|||||+|+|||.+.
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTm~G~~~-~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~-- 156 (365)
T 2y65_A 80 VLAGYNGTIFAYGQTSSGKTHTMEGVIG-DSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS-- 156 (365)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHHTBSTT-CTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT--
T ss_pred HhCCCceEEEeecCCCCCCceEEecCCC-CcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCC--
Confidence 9999999999999999999999999754 3457899999999999999887778999999999999999999999754
Q ss_pred CCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEE
Q 004272 544 NRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHL 623 (764)
Q Consensus 544 ~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~l 623 (764)
...+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|.+|||||+||+|+|.+.+...+....|+|+|
T Consensus 157 ~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~l 236 (365)
T 2y65_A 157 KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYL 236 (365)
T ss_dssp CCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEE
T ss_pred cCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc-CCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCC
Q 004272 624 VDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDA 702 (764)
Q Consensus 624 VDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k-~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~ 702 (764)
||||||||..+++++|.|++|+.+||+||++||+||.||+++ ..||||||||||+||||+||||++|+||+||||+..+
T Consensus 237 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~ 316 (365)
T 2y65_A 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFN 316 (365)
T ss_dssp EECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCC
Confidence 999999999999999999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCcccccCCc--hH-HHHHHHHHHHHH
Q 004272 703 VGETISTLKFAERVATVELGAARVNKDS--SD-VKELKEQVLTLS 744 (764)
Q Consensus 703 ~~ETlsTL~FA~r~~~v~~g~~~~n~~~--~~-v~~L~~ei~~Lk 744 (764)
++||++||+||+|++.|++.+ .+|.+. .+ .+++++++..++
T Consensus 317 ~~ETl~TL~fA~rak~I~n~~-~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 317 ESETKSTLDFGRRAKTVKNVV-CVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp HHHHHHHHHHHHHHTTCEEEC-CCEEECCSHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhcccCcc-eeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999754 455542 22 334555555443
No 10
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=9.6e-87 Score=730.44 Aligned_cols=342 Identities=42% Similarity=0.666 Sum_probs=286.1
Q ss_pred hhhhccCCCEEEEEEeCCCCCCCCC--CCcceee-ecCCeEEEeCCCCC-CCCceEEEcceecCCCCChHhHHhh-hHHH
Q 004272 386 NQVQDLKGSIRVYCRVRPFLSGQSN--YLSTVDH-IEEGNITINTPSKH-GKGWKSFSFNKVYGPSATQAEVFSD-MQPL 460 (764)
Q Consensus 386 n~~~~lkg~IrV~~RVRP~~~~e~~--~~~~i~~-~~~~~i~i~~p~~~-g~~~~~F~FD~VF~~~atQ~eVf~~-v~pl 460 (764)
...++.+++|||+|||||+.+.|.. ...++.. .+++++.+..|... ....+.|.||+||+++++|++||++ ++|+
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 93 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHH
Confidence 4567889999999999999876642 1223332 24577888877543 2256899999999999999999998 5999
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCC
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVT 540 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~ 540 (764)
|+++++|||+||||||||||||||||+|+.. .+..+|||||++++||..+.. ...+.|.|++||+|||||+|+|||.+
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~-~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG-DPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTT-SGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEecCCC-CcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCC
Confidence 9999999999999999999999999999754 456789999999999999876 44579999999999999999999976
Q ss_pred CCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC---CCceE
Q 004272 541 DGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---SGTMY 617 (764)
Q Consensus 541 ~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~---~~~~~ 617 (764)
+. ...+.|++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|+..+.. .....
T Consensus 172 ~~-~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~ 250 (372)
T 3b6u_A 172 DQ-TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIR 250 (372)
T ss_dssp CT-TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEE
T ss_pred CC-CCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceE
Confidence 53 467999999999999999999999999999999999999999999999999999999999999876542 24567
Q ss_pred EEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC-CCCCCCCChhhHHhhhccCCCccEEEEEee
Q 004272 618 RGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN-PHVPYRNSKLTQLLQDSLGGQAKTLMFVHI 696 (764)
Q Consensus 618 ~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~-~hiPYR~SKLT~LLqdsLgGnskt~mI~~I 696 (764)
.|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+|+||+||
T Consensus 251 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~v 330 (372)
T 3b6u_A 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANV 330 (372)
T ss_dssp EEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEE
T ss_pred EEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEe
Confidence 8999999999999999999999999999999999999999999999754 699999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccCcccccCCch
Q 004272 697 SPEPDAVGETISTLKFAERVATVELGAARVNKDSS 731 (764)
Q Consensus 697 SP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~~~ 731 (764)
||+..+++||++||+||+|++.|++. +++|.++.
T Consensus 331 sP~~~~~~ETlsTLrfA~rak~I~n~-~~~n~~~~ 364 (372)
T 3b6u_A 331 GPASYNVEETLTTLRYANRAKNIKNK-PRVNEDPK 364 (372)
T ss_dssp CCBGGGHHHHHHHHHHHHHHTTCBCC-CCCCC---
T ss_pred CCcccCHHHHHHHHHHHHHHhhcccc-ceecCChH
Confidence 99999999999999999999999975 55777653
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.6e-86 Score=726.55 Aligned_cols=329 Identities=39% Similarity=0.608 Sum_probs=257.8
Q ss_pred hhhhhhccCCCEEEEEEeCCCCCCCCC-CCcceeeecCCeEEEeCCCCC------------------CCCceEEEcceec
Q 004272 384 LYNQVQDLKGSIRVYCRVRPFLSGQSN-YLSTVDHIEEGNITINTPSKH------------------GKGWKSFSFNKVY 444 (764)
Q Consensus 384 l~n~~~~lkg~IrV~~RVRP~~~~e~~-~~~~i~~~~~~~i~i~~p~~~------------------g~~~~~F~FD~VF 444 (764)
+++..+|++|+|||+|||||+.+.|.. ....+..+.++.+.+.+|... ....+.|.||+||
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf 80 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVF 80 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEE
Confidence 456788999999999999999877643 223344444555555555321 1134689999999
Q ss_pred CCCCChHhHHhh-hHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEE
Q 004272 445 GPSATQAEVFSD-MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVA 523 (764)
Q Consensus 445 ~~~atQ~eVf~~-v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~ 523 (764)
+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ ..++||+||++++||..++.......|.|.
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~----~~~~Giipr~~~~lf~~i~~~~~~~~~~v~ 156 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS----ADEPGVMYLTMLHLYKCMDEIKEEKICSTA 156 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccC----CCCCCeeehhhhHHHHhhhhhccCceEEEE
Confidence 999999999998 599999999999999999999999999999995 457899999999999999887777899999
Q ss_pred EEEEEEeCCeeeeccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEE
Q 004272 524 VQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLT 603 (764)
Q Consensus 524 vS~~EIYnE~V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ift 603 (764)
|||+|||||+|+|||.+. .++.+++++.+|++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+
T Consensus 157 vS~~EIYnE~i~DLL~~~---~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~ 233 (355)
T 3lre_A 157 VSYLEVYNEQIRDLLVNS---GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQ 233 (355)
T ss_dssp EEEEEEETTEEEESSSCC---CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEE
T ss_pred EEEEEEECCEEEECcCCC---CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEE
Confidence 999999999999999754 57999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCC---CceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc---CCCCCCCCChhh
Q 004272 604 VHVQGKDLTS---GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK---NPHVPYRNSKLT 677 (764)
Q Consensus 604 i~v~~~~~~~---~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k---~~hiPYR~SKLT 677 (764)
|+|.+.+... .....|+|+|||||||||..+++++|.|++|+.+||+||++||+||.||+++ ..||||||||||
T Consensus 234 i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT 313 (355)
T 3lre_A 234 IYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLT 313 (355)
T ss_dssp EEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHH
T ss_pred EEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHH
Confidence 9999887542 3456799999999999999999999999999999999999999999999864 469999999999
Q ss_pred HHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 004272 678 QLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATV 719 (764)
Q Consensus 678 ~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v 719 (764)
+||||+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 314 ~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 314 RLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999876
No 12
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-86 Score=732.04 Aligned_cols=337 Identities=38% Similarity=0.551 Sum_probs=258.9
Q ss_pred hhhhhccCCCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHH
Q 004272 385 YNQVQDLKGSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLI 461 (764)
Q Consensus 385 ~n~~~~lkg~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV 461 (764)
|...++.+++|||+|||||+.+.|.. ...++...++.++.+.++.. ....+.|.||+||+++++|++||+. +.|+|
T Consensus 13 ~~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~-~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv 91 (388)
T 3bfn_A 13 NLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN-HQETLKYQFDAFYGERSTQQDIYAGSVQPIL 91 (388)
T ss_dssp -CCSSSCCCCCEEEEEECCCC------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGH
T ss_pred cccccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC-CCCeeEEEcceEecCCCCHhHHHHHHHHHHH
Confidence 45667889999999999999988754 23455555666676655432 2246789999999999999999997 69999
Q ss_pred HHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh---ccceEEEEEEEEEEEeCCeeeecc
Q 004272 462 RSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR---KDIFRYDVAVQMLEIYNEQVRDLL 538 (764)
Q Consensus 462 ~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~---~~~~~~~V~vS~~EIYnE~V~DLL 538 (764)
+++++|||+||||||||||||||||+|+ +.++|||||++++||..+... ...+.|.|+|||+|||||+|+|||
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM~G~----~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 167 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTMLGS----PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL 167 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESS
T ss_pred HHhhcCceeeEeeecCCCCCCCeEeecC----ccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehh
Confidence 9999999999999999999999999995 457899999999999988763 345899999999999999999999
Q ss_pred CCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCC-CceE
Q 004272 539 VTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTS-GTMY 617 (764)
Q Consensus 539 ~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~-~~~~ 617 (764)
.+. ...+.|++++.++++|.|+++++|.|++|++.+|..|.++|++++|.||.+|||||+||+|+|.+.+... ....
T Consensus 168 ~~~--~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 245 (388)
T 3bfn_A 168 DPA--SGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQR 245 (388)
T ss_dssp SCS--SCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEE
T ss_pred ccC--CCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCcee
Confidence 765 4579999999999999999999999999999999999999999999999999999999999999876543 3467
Q ss_pred EEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeC
Q 004272 618 RGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHIS 697 (764)
Q Consensus 618 ~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~IS 697 (764)
.|+|+|||||||||..+++++|.|++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+||+|||
T Consensus 246 ~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iS 325 (388)
T 3bfn_A 246 EGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIA 325 (388)
T ss_dssp EEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEEC
T ss_pred EEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccccCcccccCC
Q 004272 698 PEPDAVGETISTLKFAERVATVELGAARVNKD 729 (764)
Q Consensus 698 P~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~~ 729 (764)
|+..+++||++||+||+|++.|++.| .+|.+
T Consensus 326 P~~~~~~ETlsTLrfA~rak~I~n~p-~~n~~ 356 (388)
T 3bfn_A 326 PERRFYLDTVSALNFAARSKEVINRP-FTNES 356 (388)
T ss_dssp CSGGGHHHHHHHHHHHCSEEEEC---------
T ss_pred CccccHHHHHHHHHHHHHHhhCcCcC-cccCC
Confidence 99999999999999999999998754 45655
No 13
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.3e-86 Score=719.51 Aligned_cols=319 Identities=37% Similarity=0.576 Sum_probs=293.3
Q ss_pred ccCCCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhh-HHHHHHHHC
Q 004272 390 DLKGSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLD 466 (764)
Q Consensus 390 ~lkg~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~ 466 (764)
..+++|||+|||||+.+.|.. ...++...+++++.+. .+.|.||+||+++++|++||+.+ +|+|+++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~ 75 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA--------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLE 75 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET--------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC--------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhC
Confidence 457999999999999877643 1223333445555542 37899999999999999999995 999999999
Q ss_pred CCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCc
Q 004272 467 GYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRR 546 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~ 546 (764)
|||+||||||||||||||||+|+.. .+..+||+||++++||..+......+.|.|++||+|||||+|+|||.+. ...
T Consensus 76 G~n~tifAYGqTGSGKTyTm~G~~~-~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~--~~~ 152 (325)
T 1bg2_A 76 GYNGTIFAYGQTSSGKTHTMEGKLH-DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS--KTN 152 (325)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSTT-CTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT--CCS
T ss_pred CCeEEEEEECCCCCCCceEecccCC-CcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCC--CCC
Confidence 9999999999999999999999754 3456799999999999999887778999999999999999999999754 467
Q ss_pred eeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEec
Q 004272 547 LEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDL 626 (764)
Q Consensus 547 l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDL 626 (764)
+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|.+.+...+....|+|+||||
T Consensus 153 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDL 232 (325)
T 1bg2_A 153 LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDL 232 (325)
T ss_dssp BCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEEC
T ss_pred ceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888999999999
Q ss_pred CCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHH
Q 004272 627 AGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (764)
Q Consensus 627 AGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ET 706 (764)
|||||..+++++|.|++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 233 AGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ET 312 (325)
T 1bg2_A 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312 (325)
T ss_dssp CCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHH
T ss_pred CCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 004272 707 ISTLKFAERVATV 719 (764)
Q Consensus 707 lsTL~FA~r~~~v 719 (764)
++||+||+||++|
T Consensus 313 l~TL~fa~rak~I 325 (325)
T 1bg2_A 313 KSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999999876
No 14
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=7.4e-86 Score=720.91 Aligned_cols=333 Identities=38% Similarity=0.593 Sum_probs=301.5
Q ss_pred cCCCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCC
Q 004272 391 LKGSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (764)
Q Consensus 391 lkg~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G 467 (764)
-.++|||+|||||+.+.|.. ...++...++..+.+... ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 79 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK----EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNG 79 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST----TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTT
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC----CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCC
Confidence 36899999999999876543 223344444555555321 246899999999999999999997 69999999999
Q ss_pred CCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCce
Q 004272 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l 547 (764)
||+||||||||||||||||+|++...+..+||+||++++||..+......+.|.|++||+|||||+|+|||.+. ...+
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~--~~~l 157 (355)
T 1goj_A 80 YNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ--NDNL 157 (355)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTT--CCSC
T ss_pred CcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCc--cCCc
Confidence 99999999999999999999976545677999999999999999887778899999999999999999999765 3578
Q ss_pred eEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEEEecC
Q 004272 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHLVDLA 627 (764)
Q Consensus 548 ~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~lVDLA 627 (764)
.|++++.+|++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|.+.+...+....|+|+|||||
T Consensus 158 ~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 237 (355)
T 1goj_A 158 PVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLA 237 (355)
T ss_dssp CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred eeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred CCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc-CCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHH
Q 004272 628 GSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGET 706 (764)
Q Consensus 628 GSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k-~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ET 706 (764)
||||..+++++|+|++|+.+||+||++||+||.||+++ ..||||||||||+||||+||||++|+||+||||+..+++||
T Consensus 238 GSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ET 317 (355)
T 1goj_A 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAET 317 (355)
T ss_dssp CCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHH
T ss_pred CCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHH
Confidence 99999999999999999999999999999999999985 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCcccccCCc
Q 004272 707 ISTLKFAERVATVELGAARVNKDS 730 (764)
Q Consensus 707 lsTL~FA~r~~~v~~g~~~~n~~~ 730 (764)
++||+||+|++.|++. +++|.+.
T Consensus 318 l~TL~fA~rak~I~n~-~~vn~~~ 340 (355)
T 1goj_A 318 LSTLRFGMRAKSIKNK-AKVNAEL 340 (355)
T ss_dssp HHHHHHHHHHHTCBCC-CCCCSSS
T ss_pred HHHHHHHHHHhhccCC-ceeCCCC
Confidence 9999999999999975 5566653
No 15
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.5e-85 Score=721.52 Aligned_cols=330 Identities=40% Similarity=0.617 Sum_probs=283.2
Q ss_pred CCCEEEEEEeCCCCCCCCC-CCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCC--------CChHhHHhhh-HHHH
Q 004272 392 KGSIRVYCRVRPFLSGQSN-YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPS--------ATQAEVFSDM-QPLI 461 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~-~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~--------atQ~eVf~~v-~plV 461 (764)
.++|||+|||||+.+.|.. ...++..++++.+.+.+|.......+.|.||+||++. ++|++||+.+ +|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 4799999999999877643 2345666777888887775544457899999999987 8999999995 9999
Q ss_pred HHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhc-cceEEEEEEEEEEEeCCeeeeccCC
Q 004272 462 RSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK-DIFRYDVAVQMLEIYNEQVRDLLVT 540 (764)
Q Consensus 462 ~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~-~~~~~~V~vS~~EIYnE~V~DLL~~ 540 (764)
+++++|||+||||||||||||||||+|++. ..++|||||++++||..++... ..+.|.|+|||+|||||+|+|||.+
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~--~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 160 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSG--GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCc--cCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccc
Confidence 999999999999999999999999999752 4578999999999999987654 4689999999999999999999976
Q ss_pred CCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCC----ce
Q 004272 541 DGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG----TM 616 (764)
Q Consensus 541 ~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~----~~ 616 (764)
.. ...+.|++++..|++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||+||+|+|.+...... ..
T Consensus 161 ~~-~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 239 (366)
T 2zfi_A 161 KN-KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239 (366)
T ss_dssp TT-CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEE
T ss_pred cc-CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccce
Confidence 53 35799999999999999999999999999999999999999999999999999999999999988764432 34
Q ss_pred EEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc------------cCCCCCCCCChhhHHhhhcc
Q 004272 617 YRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ------------KNPHVPYRNSKLTQLLQDSL 684 (764)
Q Consensus 617 ~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~------------k~~hiPYR~SKLT~LLqdsL 684 (764)
..|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++ +..||||||||||+||||+|
T Consensus 240 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsL 319 (366)
T 2zfi_A 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319 (366)
T ss_dssp EEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGS
T ss_pred eEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHh
Confidence 679999999999999999999999999999999999999999999986 35799999999999999999
Q ss_pred CCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCcc
Q 004272 685 GGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAA 724 (764)
Q Consensus 685 gGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~ 724 (764)
||||+|+||+||||+..+++||++||+||+||+.|++.+.
T Consensus 320 gGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~ 359 (366)
T 2zfi_A 320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVS 359 (366)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC-------
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999999999999987653
No 16
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=7.4e-85 Score=711.53 Aligned_cols=325 Identities=38% Similarity=0.567 Sum_probs=282.6
Q ss_pred CCCEEEEEEeCCCCCCCCCC--Ccceee-ecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhhh-HHHHHHHHCC
Q 004272 392 KGSIRVYCRVRPFLSGQSNY--LSTVDH-IEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSVLDG 467 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~~--~~~i~~-~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~svl~G 467 (764)
.|+|+|+|||||+.+.|... ...+.. .++..+.. . .+.+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~-~-----~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G 76 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ-V-----DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQG 76 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEE-T-----TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEE-C-----CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 69999999999999887532 122222 23333332 1 1347899999999999999999985 9999999999
Q ss_pred CCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCCce
Q 004272 468 YNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNRRL 547 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l 547 (764)
||+||||||||||||||||+|+ ++++||+||++++||..++... ...|.|+|||+|||||+|+|||++....+++
T Consensus 77 ~n~tifAYGqTGSGKTyTM~G~----~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l 151 (349)
T 1t5c_A 77 YNGTIFAYGQTASGKTYTMMGS----EDHLGVIPRAIHDIFQKIKKFP-DREFLLRVSYMEIYNETITDLLCGTQKMKPL 151 (349)
T ss_dssp CCEEEEEEESTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHGGGCT-TEEEEEEEEEEEEETTEEEESSSSSCTTCCE
T ss_pred CccceeeecCCCCCCCeEEecC----CCCCchHHHHHHHHHHHHHhCc-CCcEEEEEEEEEEeCCEEEEccCCCCCCCCc
Confidence 9999999999999999999995 4578999999999999987654 4689999999999999999999887777889
Q ss_pred eEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCC-----CceEEEEEE
Q 004272 548 EIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTS-----GTMYRGCMH 622 (764)
Q Consensus 548 ~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~-----~~~~~s~L~ 622 (764)
.|++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|.+|||||+||+|.|++.+... +....|+|+
T Consensus 152 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~ 231 (349)
T 1t5c_A 152 IIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLN 231 (349)
T ss_dssp EEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEE
T ss_pred eEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998876532 356789999
Q ss_pred EEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC--CCCCCCCChhhHHhhhccCCCccEEEEEeeCCCC
Q 004272 623 LVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN--PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEP 700 (764)
Q Consensus 623 lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~--~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~ 700 (764)
|||||||||..+++++|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+||||++|+||+||||.
T Consensus 232 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~- 310 (349)
T 1t5c_A 232 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV- 310 (349)
T ss_dssp EEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT-
T ss_pred EEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC-
Confidence 99999999999999999999999999999999999999999765 699999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHhcccccCcccccCCc
Q 004272 701 DAVGETISTLKFAERVATVELGAARVNKDS 730 (764)
Q Consensus 701 ~~~~ETlsTL~FA~r~~~v~~g~~~~n~~~ 730 (764)
+++||++||+||+|++.|++.+ .+|.+.
T Consensus 311 -~~~ETlsTL~fA~rak~I~n~~-~vn~~~ 338 (349)
T 1t5c_A 311 -SFDETLTALQFASTAKYMKNTP-YVNEVS 338 (349)
T ss_dssp -CSHHHHHHHHHHHHHTTCCCCC-CCCEEC
T ss_pred -CHHHHHHHHHHHHHHhhcccCc-eeccCC
Confidence 6899999999999999999754 566554
No 17
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.4e-85 Score=733.39 Aligned_cols=349 Identities=38% Similarity=0.597 Sum_probs=274.7
Q ss_pred hhhccCCCEEEEEEeCCCCCCCCC-CCcceeeecC--CeEEEeCCCCCC------------CCceEEEcceecCC-----
Q 004272 387 QVQDLKGSIRVYCRVRPFLSGQSN-YLSTVDHIEE--GNITINTPSKHG------------KGWKSFSFNKVYGP----- 446 (764)
Q Consensus 387 ~~~~lkg~IrV~~RVRP~~~~e~~-~~~~i~~~~~--~~i~i~~p~~~g------------~~~~~F~FD~VF~~----- 446 (764)
...+++++|||+|||||+.+.|.. ...++..++. ..+++..|.... ...+.|+||+||++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~ 111 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTED 111 (443)
T ss_dssp --CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTS
T ss_pred ccCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCC
Confidence 357899999999999999877632 2234444433 355665553210 13579999999976
Q ss_pred --CCChHhHHhhh-HHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh---ccceEE
Q 004272 447 --SATQAEVFSDM-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR---KDIFRY 520 (764)
Q Consensus 447 --~atQ~eVf~~v-~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~---~~~~~~ 520 (764)
.++|++||+.+ .|+|+++|+|||+||||||||||||||||+|+ ++++|||||++++||..++.. ...+.|
T Consensus 112 ~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~----~~~~GIipr~~~~lF~~i~~~~~~~~~~~~ 187 (443)
T 2owm_A 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT----PDQPGLIPRTCEDLFQRIASAQDETPNISY 187 (443)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCC----TTSCCHHHHHHHHHHHHHHHTTTTSTTCEE
T ss_pred ccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecC----CCCCchHHHHHHHHHHHHHhhhcccCCceE
Confidence 48999999995 89999999999999999999999999999995 457899999999999988764 246899
Q ss_pred EEEEEEEEEeCCeeeeccCCCC---CCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCC
Q 004272 521 DVAVQMLEIYNEQVRDLLVTDG---SNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSR 597 (764)
Q Consensus 521 ~V~vS~~EIYnE~V~DLL~~~~---~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSR 597 (764)
.|+|||+|||||+|+|||.+.. ....+.|++++.+|++|.|++++.|.|++|++++|..|.++|++++|.||.+|||
T Consensus 188 ~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSR 267 (443)
T 2owm_A 188 NVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSR 267 (443)
T ss_dssp EEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTT
T ss_pred EEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCC
Confidence 9999999999999999998742 2356999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeeec----CCCceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccC-------
Q 004272 598 SHSCLTVHVQGKDL----TSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKN------- 666 (764)
Q Consensus 598 SH~ifti~v~~~~~----~~~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~------- 666 (764)
||+||+|+|.+... .......|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++++
T Consensus 268 SH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~ 347 (443)
T 2owm_A 268 SHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPS 347 (443)
T ss_dssp EEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------
T ss_pred CeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccc
Confidence 99999999987643 2234678999999999999999999999999999999999999999999998643
Q ss_pred ---------------CCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCcccccC-Cc
Q 004272 667 ---------------PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVNK-DS 730 (764)
Q Consensus 667 ---------------~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~-~~ 730 (764)
.||||||||||+||||+|||||+|+||+||||+ +++||++||+||+|++.|++.+. +|. +.
T Consensus 348 ~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~-vN~~d~ 424 (443)
T 2owm_A 348 SPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAV-VNQVDG 424 (443)
T ss_dssp ----------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCC-CCCC--
T ss_pred cccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccce-ecccCC
Confidence 389999999999999999999999999999997 59999999999999999998654 555 54
Q ss_pred hHHHHHHHHHHH
Q 004272 731 SDVKELKEQVLT 742 (764)
Q Consensus 731 ~~v~~L~~ei~~ 742 (764)
........|++.
T Consensus 425 ~~~~~~~~~~~~ 436 (443)
T 2owm_A 425 VSAAERDAQIPS 436 (443)
T ss_dssp ------------
T ss_pred ccHHHHHHHHHH
Confidence 433333444443
No 18
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.5e-85 Score=719.85 Aligned_cols=333 Identities=37% Similarity=0.589 Sum_probs=272.9
Q ss_pred ccCCCEEEEEEeCCCCCCCCC--CCcceeee-cCCeEEEeCCCCCC-CCceEEEcceecCCCCChHhHHhhh-HHHHHHH
Q 004272 390 DLKGSIRVYCRVRPFLSGQSN--YLSTVDHI-EEGNITINTPSKHG-KGWKSFSFNKVYGPSATQAEVFSDM-QPLIRSV 464 (764)
Q Consensus 390 ~lkg~IrV~~RVRP~~~~e~~--~~~~i~~~-~~~~i~i~~p~~~g-~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~sv 464 (764)
+.+++|||+|||||+.+.|.. ....+... ....+.+..+.... ...+.|.||+||+++++|++||+++ .|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 457999999999999876532 12223222 23456664321111 1457899999999999999999995 9999999
Q ss_pred HCCCCeEEEeeccCCCCCceEecCCCCCC-------cccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeec
Q 004272 465 LDGYNVCIFAYGQTGSGKTYTMTGPRELT-------EKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDL 537 (764)
Q Consensus 465 l~G~N~~IfaYGqTGSGKTyTm~G~~~~~-------~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DL 537 (764)
++|||+||||||||||||||||+|++... ...+|||||++++||..+.. ..+.|.|+|||+|||||+|+||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~DL 162 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDL 162 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEET
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceeeeh
Confidence 99999999999999999999999975421 12469999999999998865 4579999999999999999999
Q ss_pred cCCCCC-CCceeEeecCC--CCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC-C
Q 004272 538 LVTDGS-NRRLEIRNSSQ--TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT-S 613 (764)
Q Consensus 538 L~~~~~-~~~l~ir~~~~--~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~-~ 613 (764)
|.+... ...+.+++++. +|++|.|++++.|.|++|++++|..|.++|++++|.||.+|||||+||+|+|...... .
T Consensus 163 L~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~ 242 (359)
T 1x88_A 163 LNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 242 (359)
T ss_dssp TCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTT
T ss_pred hcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCC
Confidence 987654 35789999874 6899999999999999999999999999999999999999999999999999876533 2
Q ss_pred C--ceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEE
Q 004272 614 G--TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTL 691 (764)
Q Consensus 614 ~--~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~ 691 (764)
+ ....|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||+++..||||||||||+||||+||||++|+
T Consensus 243 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 322 (359)
T 1x88_A 243 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTS 322 (359)
T ss_dssp SCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEE
T ss_pred CCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEE
Confidence 2 34689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhcccccCcc
Q 004272 692 MFVHISPEPDAVGETISTLKFAERVATVELGAA 724 (764)
Q Consensus 692 mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~ 724 (764)
||+||||+..+++||++||+||+|++.|++.|.
T Consensus 323 mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~ 355 (359)
T 1x88_A 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPE 355 (359)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhccCcce
Confidence 999999999999999999999999999998654
No 19
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-84 Score=711.21 Aligned_cols=323 Identities=35% Similarity=0.510 Sum_probs=261.1
Q ss_pred ccCCCEEEEEEeCCCCCCCCCCCcceeee-cCCeEEEeCCCCC-------CCCceEEEcceecCCCCChHhHHhhh-HHH
Q 004272 390 DLKGSIRVYCRVRPFLSGQSNYLSTVDHI-EEGNITINTPSKH-------GKGWKSFSFNKVYGPSATQAEVFSDM-QPL 460 (764)
Q Consensus 390 ~lkg~IrV~~RVRP~~~~e~~~~~~i~~~-~~~~i~i~~p~~~-------g~~~~~F~FD~VF~~~atQ~eVf~~v-~pl 460 (764)
+.+|+|||||||||+.+.+.. .+... +...+.+..+... ....+.|.||+||+ +++|++||+++ +|+
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 568999999999998766543 23333 3456666655321 12457899999997 58999999996 999
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCC
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVT 540 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~ 540 (764)
|+++|+|||+||||||||||||||||+|++. +..++|||||++++||..++... .+.|.|+|||+|||||+|+|||++
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~-~~~~~Giipra~~~lF~~~~~~~-~~~~~v~vS~~EIYnE~i~DLL~~ 174 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATE-NYKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDLLST 174 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSS-CGGGBCHHHHHHHHHHHHHHTCT-TSCEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccC-CccchhhHHHHHHHHHHHhhcCC-CCcEEEEEEEEEEecccccccccc
Confidence 9999999999999999999999999999764 35678999999999999887654 468999999999999999999976
Q ss_pred CCC----CCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeec--CCC
Q 004272 541 DGS----NRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDL--TSG 614 (764)
Q Consensus 541 ~~~----~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~--~~~ 614 (764)
... ...+.+++++ .|++|.|++++.|.+++|++++|..|.++|++++|.+|.+|||||+||+|+|..... ..+
T Consensus 175 ~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~ 253 (359)
T 3nwn_A 175 LPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 253 (359)
T ss_dssp STTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred ccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCc
Confidence 432 3456777776 579999999999999999999999999999999999999999999999999976543 334
Q ss_pred ceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc-cCCCCCCCCChhhHHhhhccCCCccEEEE
Q 004272 615 TMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ-KNPHVPYRNSKLTQLLQDSLGGQAKTLMF 693 (764)
Q Consensus 615 ~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~-k~~hiPYR~SKLT~LLqdsLgGnskt~mI 693 (764)
....|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++ +..||||||||||+||||+|||||+|+||
T Consensus 254 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI 333 (359)
T 3nwn_A 254 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLV 333 (359)
T ss_dssp CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred ccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEE
Confidence 56789999999999999999999999999999999999999999999986 45799999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhccc
Q 004272 694 VHISPEPDAVGETISTLKFAERVATV 719 (764)
Q Consensus 694 ~~ISP~~~~~~ETlsTL~FA~r~~~v 719 (764)
|||||+..+++||++||+||+||+.|
T Consensus 334 ~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 334 TNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999976
No 20
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=9.3e-85 Score=716.51 Aligned_cols=335 Identities=39% Similarity=0.615 Sum_probs=275.1
Q ss_pred hccCCCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHH
Q 004272 389 QDLKGSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVL 465 (764)
Q Consensus 389 ~~lkg~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl 465 (764)
.+.+++|||||||||+.+.|.. ...++...++..+.+..+ ..+...+.|.||+||+++++|++||+. ++|+|++++
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l 97 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHT-LDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVL 97 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSS-SSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecC-CCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHh
Confidence 3567999999999999876642 233444445566665443 233457899999999999999999998 699999999
Q ss_pred CCCCeEEEeeccCCCCCceEecCCCCC-------CcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeecc
Q 004272 466 DGYNVCIFAYGQTGSGKTYTMTGPREL-------TEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLL 538 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm~G~~~~-------~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL 538 (764)
+|||+||||||||||||||||+|++.. ...++|||||++++||..+... .+.|.|+|||+|||||+|+|||
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~DLL 175 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNEELCDLL 175 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEEESS
T ss_pred CCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEEECC
Confidence 999999999999999999999997531 2347899999999999988654 3589999999999999999999
Q ss_pred CCCCCCCceeEeecC--CCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC---C
Q 004272 539 VTDGSNRRLEIRNSS--QTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT---S 613 (764)
Q Consensus 539 ~~~~~~~~l~ir~~~--~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~---~ 613 (764)
.++. ...+.+++++ .++++|.|+++++|.|++|++++|..|.++|++++|.||.+|||||+||+|+|...... .
T Consensus 176 ~~~~-~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 254 (373)
T 2wbe_C 176 STDD-TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE 254 (373)
T ss_dssp CTTS-CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTC
T ss_pred CCCC-CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCC
Confidence 8653 3567788774 46799999999999999999999999999999999999999999999999999876432 2
Q ss_pred CceEEEEEEEEecCCCcCccccCCc-hhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEE
Q 004272 614 GTMYRGCMHLVDLAGSERVNKSEVT-GDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLM 692 (764)
Q Consensus 614 ~~~~~s~L~lVDLAGSEr~~~s~~~-g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~m 692 (764)
.....|+|+|||||||||..++++. |.|++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+|
T Consensus 255 ~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 334 (373)
T 2wbe_C 255 DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSI 334 (373)
T ss_dssp CEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEE
T ss_pred cceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEE
Confidence 2356899999999999999999887 999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhcccccCcccccC
Q 004272 693 FVHISPEPDAVGETISTLKFAERVATVELGAARVNK 728 (764)
Q Consensus 693 I~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n~ 728 (764)
|+||||+..+++||++||+||+|++.|++.+. +|.
T Consensus 335 Ia~isP~~~~~~ETlsTLrfA~rak~I~n~p~-vN~ 369 (373)
T 2wbe_C 335 IATISPGHKDIEETLSTLEYAHRAKNIQNKPE-VNQ 369 (373)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHHTCEECCC-CCE
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHhhccccce-ecc
Confidence 99999999999999999999999999998654 444
No 21
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=4e-84 Score=705.70 Aligned_cols=318 Identities=39% Similarity=0.636 Sum_probs=261.6
Q ss_pred CCCEEEEEEeCCCCCCCCC--CCcceeeec-CCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHHCC
Q 004272 392 KGSIRVYCRVRPFLSGQSN--YLSTVDHIE-EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVLDG 467 (764)
Q Consensus 392 kg~IrV~~RVRP~~~~e~~--~~~~i~~~~-~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl~G 467 (764)
.++|||+|||||+.+.|.. ...++.... ...+.+. ..+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-------~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G 82 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG-------RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEG 82 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET-------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred ccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec-------ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhh
Confidence 6899999999999887632 233443332 2333331 25789999999999999999998 69999999999
Q ss_pred CCeEEEeeccCCCCCceEecCCCCC--CcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCCCC
Q 004272 468 YNVCIFAYGQTGSGKTYTMTGPREL--TEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGSNR 545 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~G~~~~--~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~~~ 545 (764)
||+||||||||||||||||+|++.. .++++||+||++++||..++.. ..+.|.|+|||+|||||+|+|||.+....+
T Consensus 83 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 161 (344)
T 4a14_A 83 FNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTASR 161 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCCCGG
T ss_pred cCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHHHhccccc
Confidence 9999999999999999999996432 2467899999999999998765 457999999999999999999998877778
Q ss_pred ceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC--------CCceE
Q 004272 546 RLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT--------SGTMY 617 (764)
Q Consensus 546 ~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~--------~~~~~ 617 (764)
.+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+.. .+...
T Consensus 162 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~ 241 (344)
T 4a14_A 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241 (344)
T ss_dssp GCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEE
T ss_pred cceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999887532 34567
Q ss_pred EEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc---CCCCCCCCChhhHHhhhccCCCccEEEEE
Q 004272 618 RGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK---NPHVPYRNSKLTQLLQDSLGGQAKTLMFV 694 (764)
Q Consensus 618 ~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k---~~hiPYR~SKLT~LLqdsLgGnskt~mI~ 694 (764)
.|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||+
T Consensus 242 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 321 (344)
T 4a14_A 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA 321 (344)
T ss_dssp EEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEE
T ss_pred eeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEE
Confidence 899999999999999999999999999999999999999999999863 46999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhc
Q 004272 695 HISPEPDAVGETISTLKFAERVA 717 (764)
Q Consensus 695 ~ISP~~~~~~ETlsTL~FA~r~~ 717 (764)
||||+..+++||++||+||+||+
T Consensus 322 ~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 322 CVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC
T ss_pred EeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999985
No 22
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.7e-84 Score=706.84 Aligned_cols=321 Identities=41% Similarity=0.631 Sum_probs=258.8
Q ss_pred CEEEEEEeCCCCCCCCC-CCcceeeecCCeEEEeCCCCC------CCCceEEEcceec--------CCCCChHhHHhhh-
Q 004272 394 SIRVYCRVRPFLSGQSN-YLSTVDHIEEGNITINTPSKH------GKGWKSFSFNKVY--------GPSATQAEVFSDM- 457 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~-~~~~i~~~~~~~i~i~~p~~~------g~~~~~F~FD~VF--------~~~atQ~eVf~~v- 457 (764)
+|+|+|||||+.+.|.. ...++..++++.+.+..|... ....+.|.||+|| ++.++|++||+.+
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~ 81 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLG 81 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhh
Confidence 79999999999877653 234555666777766544211 1146889999999 4578999999995
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhh-ccceEEEEEEEEEEEeCCeeee
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQR-KDIFRYDVAVQMLEIYNEQVRD 536 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~-~~~~~~~V~vS~~EIYnE~V~D 536 (764)
.|+|+++++|||+||||||||||||||||+|+ .+++|||||++++||..+... ...+.|.|+|||+|||||+|+|
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~----~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D 157 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMMGT----ADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRD 157 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEEecC----CCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeE
Confidence 99999999999999999999999999999995 457899999999999988654 4568999999999999999999
Q ss_pred ccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecC--C-
Q 004272 537 LLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLT--S- 613 (764)
Q Consensus 537 LL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~--~- 613 (764)
||.+.+....+.+++++..|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.... .
T Consensus 158 LL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 237 (354)
T 3gbj_A 158 LLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSG 237 (354)
T ss_dssp TTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSC
T ss_pred ccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCC
Confidence 9988777788999999999999999999999999999999999999999999999999999999999999876432 2
Q ss_pred -CceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc------cCCCCCCCCChhhHHhhhccCC
Q 004272 614 -GTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ------KNPHVPYRNSKLTQLLQDSLGG 686 (764)
Q Consensus 614 -~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~------k~~hiPYR~SKLT~LLqdsLgG 686 (764)
.....|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||++ +..||||||||||+||||+|||
T Consensus 238 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgG 317 (354)
T 3gbj_A 238 TSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGG 317 (354)
T ss_dssp EEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHST
T ss_pred CCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCC
Confidence 235679999999999999999999999999999999999999999999985 4579999999999999999999
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhcc
Q 004272 687 QAKTLMFVHISPEPDAVGETISTLKFAERVAT 718 (764)
Q Consensus 687 nskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~ 718 (764)
||+|+||+||||+..+++||++||+||.||+-
T Consensus 318 nskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 318 NSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp TCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred CCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999974
No 23
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.9e-84 Score=718.51 Aligned_cols=345 Identities=31% Similarity=0.475 Sum_probs=277.5
Q ss_pred HHHHhhhhHHHHHHhhhhhhhhccCCCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCCC-----CceEEEc
Q 004272 368 AHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGK-----GWKSFSF 440 (764)
Q Consensus 368 ~~~~~~~~~~~~e~r~l~n~~~~lkg~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g~-----~~~~F~F 440 (764)
......|.+.+..++..++...+ +++|+|+|||||+.+.|.. ...++...+++.+.+..|..... ..+.|.|
T Consensus 47 ~~~i~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~F 125 (410)
T 1v8k_A 47 ARMIKEFRVTMECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCF 125 (410)
T ss_dssp HHHHHHHHHHHTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHhhccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEee
Confidence 34445677777778888887776 8999999999999876643 22233333456666655432111 2478999
Q ss_pred ceecCCCCChHhHHhh-hHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCC--CCcccccchHHHHHHHHHHHhhhc-c
Q 004272 441 NKVYGPSATQAEVFSD-MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRE--LTEKSQGVNYRALSDLFLIAEQRK-D 516 (764)
Q Consensus 441 D~VF~~~atQ~eVf~~-v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~--~~~~~~GIi~ral~~LF~~~~~~~-~ 516 (764)
|+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+.. .....+||+||++++||..+.... .
T Consensus 126 D~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~ 205 (410)
T 1v8k_A 126 DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYR 205 (410)
T ss_dssp SEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHH
T ss_pred eEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhccc
Confidence 9999999999999998 59999999999999999999999999999999632 124578999999999999886533 4
Q ss_pred ceEEEEEEEEEEEeCCeeeeccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCC
Q 004272 517 IFRYDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSS 596 (764)
Q Consensus 517 ~~~~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SS 596 (764)
.+.|.|+|||+|||||+|+|||.+. ..+.|++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|.+||
T Consensus 206 ~~~~~V~vS~lEIYnE~i~DLL~~~---~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SS 282 (410)
T 1v8k_A 206 NLNLEVYVTFFEIYNGKVFDLLNKK---AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 282 (410)
T ss_dssp TTCCEEEEEEEEEETTEEEETTTTT---EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCC
T ss_pred CccEEEEEEEEEeeCCEEEECCCCC---CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCC
Confidence 5789999999999999999999653 5799999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeeecCCCceEEEEEEEEecCCCcCccccC-CchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCCh
Q 004272 597 RSHSCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSE-VTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSK 675 (764)
Q Consensus 597 RSH~ifti~v~~~~~~~~~~~~s~L~lVDLAGSEr~~~s~-~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SK 675 (764)
|||+||+|+|.+. ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+++..||||||||
T Consensus 283 RSH~Ifti~v~~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSK 357 (410)
T 1v8k_A 283 RSHACFQILLRTK-----GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESK 357 (410)
T ss_dssp SSEEEEEEEEESS-----SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCH
T ss_pred CceEEEEEEEEeC-----CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccch
Confidence 9999999999765 2468999999999999988775 567888999999999999999999999999999999999
Q ss_pred hhHHhhhc-cCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhccccc
Q 004272 676 LTQLLQDS-LGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721 (764)
Q Consensus 676 LT~LLqds-LgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~ 721 (764)
||+||||+ |||||+|+||+||||+..+++||++||+||+||+.|.-
T Consensus 358 LTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~ 404 (410)
T 1v8k_A 358 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSH 404 (410)
T ss_dssp HHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCC
Confidence 99999999 69999999999999999999999999999999999964
No 24
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.1e-84 Score=716.41 Aligned_cols=343 Identities=31% Similarity=0.467 Sum_probs=271.4
Q ss_pred HhhhhHHHHHHhhhhhhhhccCCCEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCCC-----CceEEEccee
Q 004272 371 ASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHGK-----GWKSFSFNKV 443 (764)
Q Consensus 371 ~~~~~~~~~e~r~l~n~~~~lkg~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g~-----~~~~F~FD~V 443 (764)
...|++.+..|+.++++..+ +++|||+|||||+.+.|.. ...++...+++.+.+..|..... ..+.|.||+|
T Consensus 30 ~~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~V 108 (387)
T 2heh_A 30 IKEFRATLECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 108 (387)
T ss_dssp HHHHHHHCCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEE
T ss_pred HHHHHHhhccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEE
Confidence 34566666667788887776 8999999999999876643 12233334556666665432111 3478999999
Q ss_pred cCCCCChHhHHhh-hHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCC--CcccccchHHHHHHHHHHHhhhc-cceE
Q 004272 444 YGPSATQAEVFSD-MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPREL--TEKSQGVNYRALSDLFLIAEQRK-DIFR 519 (764)
Q Consensus 444 F~~~atQ~eVf~~-v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~--~~~~~GIi~ral~~LF~~~~~~~-~~~~ 519 (764)
|+++++|++||+. ++|+|+++++|||+||||||||||||||||+|+... ....+||+||++++||..++... ..+.
T Consensus 109 F~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~ 188 (387)
T 2heh_A 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLG 188 (387)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTT
T ss_pred EecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCce
Confidence 9999999999998 599999999999999999999999999999996321 23568999999999999886533 3568
Q ss_pred EEEEEEEEEEeCCeeeeccCCCCCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCc
Q 004272 520 YDVAVQMLEIYNEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSH 599 (764)
Q Consensus 520 ~~V~vS~~EIYnE~V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH 599 (764)
|.|+|||+|||||+|+|||.+. ..+.|++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|.+|||||
T Consensus 189 ~~V~vS~~EIYnE~v~DLL~~~---~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 265 (387)
T 2heh_A 189 LEVYVTFFEIYNGKLFDLLNKK---AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSH 265 (387)
T ss_dssp CEEEEEEEEEETTEEEETTTTT---EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSE
T ss_pred EEEEEEEEEecCCeEEECCCCC---ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccce
Confidence 9999999999999999999653 5789999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeeecCCCceEEEEEEEEecCCCcCccccC-CchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhH
Q 004272 600 SCLTVHVQGKDLTSGTMYRGCMHLVDLAGSERVNKSE-VTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQ 678 (764)
Q Consensus 600 ~ifti~v~~~~~~~~~~~~s~L~lVDLAGSEr~~~s~-~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~ 678 (764)
+||+|+|.+. ....|+|+|||||||||..+++ +.+.+++|+.+||+||++||+||.||+++..||||||||||+
T Consensus 266 ~Ifti~v~~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTr 340 (387)
T 2heh_A 266 ACFQIILRAK-----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 340 (387)
T ss_dssp EEEEEEEESS-----SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHH
T ss_pred EEEEEEEEEC-----CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHH
Confidence 9999999764 2468999999999999998775 567889999999999999999999999999999999999999
Q ss_pred Hhhhc-cCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccC
Q 004272 679 LLQDS-LGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELG 722 (764)
Q Consensus 679 LLqds-LgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g 722 (764)
||||+ |||||+|+||+||||+..+++||++||+||+||++|+.+
T Consensus 341 lLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 341 VLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp HTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred HHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999 699999999999999999999999999999999999753
No 25
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=5.6e-84 Score=706.37 Aligned_cols=327 Identities=35% Similarity=0.505 Sum_probs=262.8
Q ss_pred hhhhccCCCEEEEEEeCCCCCCCCCCCcceee-ecCCeEEEeCCCCCC-------CCceEEEcceecCCCCChHhHHhhh
Q 004272 386 NQVQDLKGSIRVYCRVRPFLSGQSNYLSTVDH-IEEGNITINTPSKHG-------KGWKSFSFNKVYGPSATQAEVFSDM 457 (764)
Q Consensus 386 n~~~~lkg~IrV~~RVRP~~~~e~~~~~~i~~-~~~~~i~i~~p~~~g-------~~~~~F~FD~VF~~~atQ~eVf~~v 457 (764)
-.-.+++|+|||||||||+.+.+.. .+.. .++.++.+..|.... ...+.|.||+|| ++++|++||+.+
T Consensus 16 ~~~~~~~g~IrV~vRvRP~~~~~~~---~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf-~~~sQ~~Vy~~~ 91 (358)
T 2nr8_A 16 PRGSGTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL-HDASQDLVYETV 91 (358)
T ss_dssp -------CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEE-ESCCHHHHHHHH
T ss_pred cCCCCCCCCeEEEEEcCCCCCCccc---eeEECCCCCEEEEecCCccccccccCCCcceEEECCeec-CCcCHHHHHHHH
Confidence 4456889999999999998764432 2322 245667776653321 235789999999 589999999995
Q ss_pred -HHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeee
Q 004272 458 -QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRD 536 (764)
Q Consensus 458 -~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~D 536 (764)
+|+|+++++|||+||||||||||||||||+|++. ....+|||||++++||..++... .+.|.|+|||+|||||+|+|
T Consensus 92 ~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~-~~~~~Giipra~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~D 169 (358)
T 2nr8_A 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATE-NYKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFD 169 (358)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSS-CGGGBCHHHHHHHHHHHHHHTCT-TSCEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCceEeccccc-ccccCCcHHHHHHHHHHHHhhcC-CceEEEEEEEEEEeCCeeeE
Confidence 9999999999999999999999999999999754 33468999999999999987654 45899999999999999999
Q ss_pred ccCCCC----CCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeec-
Q 004272 537 LLVTDG----SNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDL- 611 (764)
Q Consensus 537 LL~~~~----~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~- 611 (764)
||.+.. ...++.|++++ .|++|.|++++.|.+.+|++.+|..|.++|++++|.+|..|||||+||+|+|.+...
T Consensus 170 LL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~ 248 (358)
T 2nr8_A 170 LLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 248 (358)
T ss_dssp TTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---
T ss_pred CcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEecc
Confidence 998643 34678999998 789999999999999999999999999999999999999999999999999987653
Q ss_pred -CCCceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhcc-CCCCCCCCChhhHHhhhccCCCcc
Q 004272 612 -TSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQK-NPHVPYRNSKLTQLLQDSLGGQAK 689 (764)
Q Consensus 612 -~~~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k-~~hiPYR~SKLT~LLqdsLgGnsk 689 (764)
..+....|+|+|||||||||..+++++|+|++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+
T Consensus 249 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnsk 328 (358)
T 2nr8_A 249 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 328 (358)
T ss_dssp ----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSE
T ss_pred CCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCe
Confidence 334557899999999999999999999999999999999999999999999874 579999999999999999999999
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 004272 690 TLMFVHISPEPDAVGETISTLKFAERVATV 719 (764)
Q Consensus 690 t~mI~~ISP~~~~~~ETlsTL~FA~r~~~v 719 (764)
|+||+||||+..+++||++||+||+||+.|
T Consensus 329 t~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 329 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999976
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-82 Score=696.44 Aligned_cols=325 Identities=28% Similarity=0.437 Sum_probs=276.7
Q ss_pred CEEEEEEeCCCCCCCCC--CCcceeeecCCeEEEeCCCCCC-----CCceEEEcceecCCCCChHhHHhh-hHHHHHHHH
Q 004272 394 SIRVYCRVRPFLSGQSN--YLSTVDHIEEGNITINTPSKHG-----KGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVL 465 (764)
Q Consensus 394 ~IrV~~RVRP~~~~e~~--~~~~i~~~~~~~i~i~~p~~~g-----~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl 465 (764)
+|||+|||||+.+.|.. ...++...++.++.+..|.... ...+.|.||+||+++++|++||++ ++|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 69999999999877642 2334445566777776653211 124689999999999999999998 699999999
Q ss_pred C-CCCeEEEeeccCCCCCceEecCCCC-CCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCeeeeccCCCCC
Q 004272 466 D-GYNVCIFAYGQTGSGKTYTMTGPRE-LTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQVRDLLVTDGS 543 (764)
Q Consensus 466 ~-G~N~~IfaYGqTGSGKTyTm~G~~~-~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~V~DLL~~~~~ 543 (764)
+ |||+||||||||||||||||+|+.. .....+||+||++++||..++.....+.|.|+|||+|||||+|+|||.+.
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~-- 158 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR-- 158 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC--
Confidence 6 9999999999999999999999743 12467899999999999999877767789999999999999999999654
Q ss_pred CCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEEEE
Q 004272 544 NRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCMHL 623 (764)
Q Consensus 544 ~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L~l 623 (764)
+.+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+.+ .....|+|+|
T Consensus 159 -~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL~l 234 (360)
T 1ry6_A 159 -KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAF 234 (360)
T ss_dssp -----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEE
T ss_pred -ccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEEEE
Confidence 456788888899999999999999999999999999999999999999999999999999998643 4467899999
Q ss_pred EecCCCcCccccCCch-hhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCC
Q 004272 624 VDLAGSERVNKSEVTG-DRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDA 702 (764)
Q Consensus 624 VDLAGSEr~~~s~~~g-~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~ 702 (764)
||||||||..++++.| .+++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 314 (360)
T 1ry6_A 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISC 314 (360)
T ss_dssp EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGG
T ss_pred EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCccc
Confidence 9999999999998876 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCcc
Q 004272 703 VGETISTLKFAERVATVELGAA 724 (764)
Q Consensus 703 ~~ETlsTL~FA~r~~~v~~g~~ 724 (764)
++||++||+||+||+.|++.+.
T Consensus 315 ~~ETlsTLrfA~rak~i~n~~~ 336 (360)
T 1ry6_A 315 CEQTLNTLRYSSRVKNKGNSKL 336 (360)
T ss_dssp HHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHhhcccCcc
Confidence 9999999999999999987543
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.1e-81 Score=681.35 Aligned_cols=313 Identities=31% Similarity=0.481 Sum_probs=245.7
Q ss_pred ccCCCEEEEEEeCCCCCCCCCCCc-ceeeec--CCeEEEeCCCCCCCCceEEEcceecCCCCChHhHHhh-hHHHHHHHH
Q 004272 390 DLKGSIRVYCRVRPFLSGQSNYLS-TVDHIE--EGNITINTPSKHGKGWKSFSFNKVYGPSATQAEVFSD-MQPLIRSVL 465 (764)
Q Consensus 390 ~lkg~IrV~~RVRP~~~~e~~~~~-~i~~~~--~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~svl 465 (764)
+-.++|||+|||||+.+.+..... .+.... ++...+. ..+.|.||+||+++++|++||+. +.|+|++++
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~-------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l 91 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV-------DQNEFHFDHAFPATISQDEMYQALILPLVDKLL 91 (344)
T ss_dssp CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE-------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe-------cCcEEEcceEECCCCCHHHHHHhhccchhhHhh
Confidence 456899999999999876533222 222221 2222222 24789999999999999999998 599999999
Q ss_pred CCCCeEEEeeccCCCCCceEecCCCC--CCcccccchHHHHHHHHHHHhhhcc--ceEEEEEEEEEEEeCCeeeeccCCC
Q 004272 466 DGYNVCIFAYGQTGSGKTYTMTGPRE--LTEKSQGVNYRALSDLFLIAEQRKD--IFRYDVAVQMLEIYNEQVRDLLVTD 541 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm~G~~~--~~~~~~GIi~ral~~LF~~~~~~~~--~~~~~V~vS~~EIYnE~V~DLL~~~ 541 (764)
+|||+||||||||||||||||.|.+. ..++.+|||||++++||..+..... .+.|.|++||+|||||+|+|||.+.
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 171 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGST 171 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSC
T ss_pred CCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCC
Confidence 99999999999999999999998643 2356789999999999998876543 3579999999999999999999765
Q ss_pred CCCCceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCceEEEEE
Q 004272 542 GSNRRLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTMYRGCM 621 (764)
Q Consensus 542 ~~~~~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~~~s~L 621 (764)
..... .+..+.++++++|.|.+|++.+|..|.++|++++|.+|..|||||+||+|+|.+. ...|+|
T Consensus 172 ~~~~~--------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~skl 237 (344)
T 3dc4_A 172 PHMPM--------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSRM 237 (344)
T ss_dssp TTSBC--------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEEE
T ss_pred CCCcc--------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEEE
Confidence 43211 2334678999999999999999999999999999999999999999999999753 357999
Q ss_pred EEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCC
Q 004272 622 HLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPD 701 (764)
Q Consensus 622 ~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~ 701 (764)
+|||||||||..+++++|.|++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||+||||+..
T Consensus 238 ~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~ 317 (344)
T 3dc4_A 238 NIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQC 317 (344)
T ss_dssp EEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGG
T ss_pred EEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccCc
Q 004272 702 AVGETISTLKFAERVATVELGA 723 (764)
Q Consensus 702 ~~~ETlsTL~FA~r~~~v~~g~ 723 (764)
+++||++||+||+||+.....+
T Consensus 318 ~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 318 DLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp GHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999876543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=7.8e-79 Score=723.25 Aligned_cols=333 Identities=42% Similarity=0.641 Sum_probs=269.5
Q ss_pred hhhhhhccCCCEEEEEEeC----CCCCCCCCC---------CcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCCh
Q 004272 384 LYNQVQDLKGSIRVYCRVR----PFLSGQSNY---------LSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQ 450 (764)
Q Consensus 384 l~n~~~~lkg~IrV~~RVR----P~~~~e~~~---------~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ 450 (764)
.-.++..+.+++||||||| |.+..+.+. ...+.....+.+++..+.++....++|+||+||+++++|
T Consensus 365 Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q 444 (715)
T 4h1g_A 365 AQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSN 444 (715)
T ss_dssp HHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCH
T ss_pred HHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCH
Confidence 4456778889999999999 544443321 112233344678887776666678999999999999999
Q ss_pred HhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhc-cceEEEEEEEEEEE
Q 004272 451 AEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK-DIFRYDVAVQMLEI 529 (764)
Q Consensus 451 ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~-~~~~~~V~vS~~EI 529 (764)
++||+.|.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||..++... ..+.|.|+|||+||
T Consensus 445 ~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~------~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Ei 518 (715)
T 4h1g_A 445 DLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP------TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEI 518 (715)
T ss_dssp HHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC------CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEE
Confidence 999999999999999999999999999999999999994 46999999999999887643 46899999999999
Q ss_pred eCCeeeeccCCCC-CCCceeEeecCC-CCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEE
Q 004272 530 YNEQVRDLLVTDG-SNRRLEIRNSSQ-TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQ 607 (764)
Q Consensus 530 YnE~V~DLL~~~~-~~~~l~ir~~~~-~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~ 607 (764)
|||+|+|||.+.. ....+.++++.. ++++|.|++++.|.|.+|++.+|..|.++|++++|.+|.+|||||+||+|+|.
T Consensus 519 yne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~ 598 (715)
T 4h1g_A 519 YNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQ 598 (715)
T ss_dssp ETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEE
T ss_pred ECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEE
Confidence 9999999998753 345677877654 45899999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCceEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhc-cCCCCCCCCChhhHHhhhccCC
Q 004272 608 GKDLTSGTMYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQ-KNPHVPYRNSKLTQLLQDSLGG 686 (764)
Q Consensus 608 ~~~~~~~~~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~-k~~hiPYR~SKLT~LLqdsLgG 686 (764)
+.+...+....|+|+|||||||||..+++++|+|++|+.+||+||++||+||.+|+. ++.||||||||||+||||+|||
T Consensus 599 ~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slgg 678 (715)
T 4h1g_A 599 GYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGG 678 (715)
T ss_dssp EEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTST
T ss_pred EEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCC
Confidence 998888888999999999999999999999999999999999999999999999985 4589999999999999999999
Q ss_pred CccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccC
Q 004272 687 QAKTLMFVHISPEPDAVGETISTLKFAERVATVELG 722 (764)
Q Consensus 687 nskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g 722 (764)
||+|+||+||||+..+++||++||+||+|+++|+++
T Consensus 679 n~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~n 714 (715)
T 4h1g_A 679 NSKTLMFVNISPLTKDLNETINSLRFATKVNNTRIN 714 (715)
T ss_dssp TCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CceEEEEEEECCChhhHHHHHHHHHHHHHhccceeC
Confidence 999999999999999999999999999999999754
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-35 Score=301.86 Aligned_cols=279 Identities=16% Similarity=0.196 Sum_probs=198.1
Q ss_pred hhhhHHHHHHhhhhhhhhccCCCEEEEEEeCCCC-CCCCCCCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCCCh
Q 004272 372 SGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFL-SGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSATQ 450 (764)
Q Consensus 372 ~~~~~~~~e~r~l~n~~~~lkg~IrV~~RVRP~~-~~e~~~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~atQ 450 (764)
++|+++...||+|||.++||||||||||||||.. + ..+.....++.|++ .. ..+.|.||+||+|.++|
T Consensus 3 dK~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p-----~~~~v~y~~~~I~v-~~-----~~k~f~FDRVf~p~s~Q 71 (298)
T 2o0a_A 3 STVEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLP-----ENLLFDYENGVITQ-GL-----SEHVYKFNRVIPHLKVS 71 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSC-----TTEEEETTTTEEEE-TT-----TCCEEECSEEEETTTSC
T ss_pred hHHHHHHHHHHHHHhHHHHhhCceEEEEEeccccCC-----ccceeecCccceee-cC-----CCceEEeeeEECccccc
Confidence 3456666779999999999999999999999965 4 22333444455665 32 23799999999999999
Q ss_pred H--hHHhhhHHHHHHHHC-CCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhh-hccceEEEEEEEE
Q 004272 451 A--EVFSDMQPLIRSVLD-GYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQ-RKDIFRYDVAVQM 526 (764)
Q Consensus 451 ~--eVf~~v~plV~svl~-G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~-~~~~~~~~V~vS~ 526 (764)
+ +||++++++|+++|+ ||||||||||||||||| |||+..+|...+. .. |+|.+++||
T Consensus 72 e~~~vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-----------------~ral~q~f~~~~~~~~--~~Y~~tlq~ 132 (298)
T 2o0a_A 72 EDKFFTQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-----------------RESLIKFLAEKDTIYQ--KQYVITLQF 132 (298)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-----------------HHHHHHHHHSTTSHHH--HHEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcc-----------------HHHHHHHHHHhhhhcc--cceEEEEEE
Confidence 9 999999999999999 99999999999999999 9999999987754 33 899999999
Q ss_pred EEEe-CCeeeeccCCCCCCCceeEeecCCCCccCCCCeEEecCC-HHHHHHHHHhhhhccccccccCCCCCCCCcceEEE
Q 004272 527 LEIY-NEQVRDLLVTDGSNRRLEIRNSSQTGLNVPDASLIPVSS-TADVINLMNLGQKNRAVGATALNDRSSRSHSCLTV 604 (764)
Q Consensus 527 ~EIY-nE~V~DLL~~~~~~~~l~ir~~~~~g~~v~~lt~v~V~s-~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti 604 (764)
+||| ||.++|||..++....++|+.+..++..|.|++.++|.+ .+|+..++..+..- .+|. +.-.|+.+
T Consensus 133 veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~ 203 (298)
T 2o0a_A 133 VFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKV 203 (298)
T ss_dssp EEEECC-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEE
T ss_pred EEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEE
Confidence 9999 999999997555555789998888899999999999999 89998877322211 1121 33567777
Q ss_pred EEEeeecCCCc---eEEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhh
Q 004272 605 HVQGKDLTSGT---MYRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQ 681 (764)
Q Consensus 605 ~v~~~~~~~~~---~~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLq 681 (764)
++...+..... ..--.++|+.+.-.. +...|.+ ++..+ .+-.|+++-+|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~----~~~~spi~~il~ 256 (298)
T 2o0a_A 204 QFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK----ESCETPIALVLK 256 (298)
T ss_dssp EEEESCC-------CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC-----CCCSHHHHHHH
T ss_pred EEecCcccccccCCCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc----cccCCcHHHHHH
Confidence 77664322111 112246777665211 1223333 22122 456789999998
Q ss_pred hccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhccccc
Q 004272 682 DSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVEL 721 (764)
Q Consensus 682 dsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~ 721 (764)
.-| -..|.++++++...... -.-|..++++.++.+
T Consensus 257 ~ll-~~tks~~~~~l~~~~~~----~~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 257 KLI-SDTKSFFLLNLNDSKNV----NKLLTISEEVQTQLC 291 (298)
T ss_dssp HHH-HHSBCEEEEEECCGGGH----HHHHHHHHHHHHHTC
T ss_pred HHH-hcCcceEEEEecCCCch----hHHHHHHHHhhcccC
Confidence 766 35677899999764332 237888888887764
No 30
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.94 E-value=1.3e-27 Score=224.32 Aligned_cols=111 Identities=25% Similarity=0.485 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHH-HHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEF-RLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f-~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
.+++++++||++++| +..++.|.. +.++| +++||||+|||+|+|+++||+|+||+..|. ++|+++||
T Consensus 12 ~~~~e~~~WI~~~~~-L~~~~~~~~-~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~----------~~f~~~eN 79 (126)
T 2l3g_A 12 NSAEQTVTWLITLGV-LESPKKTIS-DPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPR----------SESECLSN 79 (126)
T ss_dssp CHHHHHHHHHHHTTS-SCCCSSCCS-CHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCC----------SHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccccCCCCC-ChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCC----------cchHHHHH
Confidence 567899999999964 222233443 34455 799999999999999999999999976552 58999999
Q ss_pred HHHHHHHHHh-cCCCCccCCccccCCChhHHHHHHHHHHhccccc
Q 004272 120 VRNFLVAVQE-MGLPTFEASDLEQGGKSARVVNCVLALKSYGEWK 163 (764)
Q Consensus 120 I~~FL~ac~~-lGvp~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k 163 (764)
|++||+||++ +|+..|++.||||++|+++|+.||+||++++...
T Consensus 80 I~~FL~a~~~~~g~~lF~t~DL~e~kn~~~V~~cL~aL~~~~~~~ 124 (126)
T 2l3g_A 80 IREFLRGCGASLRLETFDANDLYQGQNFNKVLSSLVTLNKVTADI 124 (126)
T ss_dssp HHHHHHHHHHTSCCCCCCHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccCHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999999999999999999999987754
No 31
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.94 E-value=6.2e-28 Score=221.12 Aligned_cols=103 Identities=34% Similarity=0.604 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
.+++|+++||+.++|. ++ +++|.++||||++||+|+|++.||+|++|+.++ ++|+++|||
T Consensus 3 ~~e~e~~~WIe~~l~~----~~-----~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~-----------~~f~~~eNI 62 (108)
T 1h67_A 3 QTERQLRVWIEGATGR----RI-----GDNFMDGLKDGVILCELINKLQPGSVQKVNDPV-----------QNWHKLENI 62 (108)
T ss_dssp CSSHHHHHHHHHHHSC----CC-----CSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTT-----------SSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC----CC-----cHHHHHHHccHHHHHHHHHHhCCCCcccccccc-----------cchHHHHHH
Confidence 3568999999999974 32 257999999999999999999999999997654 689999999
Q ss_pred HHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhccccc
Q 004272 121 RNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWK 163 (764)
Q Consensus 121 ~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k 163 (764)
++||+||+++||| +|++.||||++|+++|+.||+||++++.+|
T Consensus 63 ~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~~l~aL~~~a~~k 108 (108)
T 1h67_A 63 GNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK 108 (108)
T ss_dssp HHHHHHHHHHTSCGGGSCCHHHHHHTCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcccccChhHHHhCCChHHHHHHHHHHHHHHccC
Confidence 9999999999999 699999999999999999999999988764
No 32
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=3.7e-27 Score=229.15 Aligned_cols=110 Identities=25% Similarity=0.455 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCC-CCChHHHHHHccchhHHHHHHHhhcC---CCCCceecCCCccccCCccccchhhH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPA-EPSEEEFRLGLRSGIILCNVINKVQP---GAVPKVVESPDTVLVPDGAALSAYQY 116 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~-~~~~e~f~~~LrdGvvLC~L~N~l~P---g~v~ki~~~~~~~~~~~~~~~~~f~~ 116 (764)
..+.++++||+.++|. ++|. +++.++|.++||||||||+|+|+|.| |+|+||+.++ ++|++
T Consensus 17 ~~e~e~~~WIe~~l~~----~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~~~-----------~~F~~ 81 (155)
T 1wym_A 17 DLEQILIQWITTQCRK----DVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQAST-----------MAFKQ 81 (155)
T ss_dssp HHHHHHHHHHHHHSSS----CCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCCCC-----------CHHHH
T ss_pred HHHHHHHHHHHHHhCC----CCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCcccCCC-----------ccccH
Confidence 3456899999999874 5554 45679999999999999999999999 9999997654 78999
Q ss_pred HHHHHHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhccccccc
Q 004272 117 FENVRNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQT 165 (764)
Q Consensus 117 ~ENI~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~ 165 (764)
||||++||+||+.|||| +|++.||||++|+.+|+.||+||++++..++.
T Consensus 82 ~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~Vi~cL~aL~~~a~~~~~ 133 (155)
T 1wym_A 82 MEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDD 133 (155)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCCHHHHHTCSCHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHcCCCccccCChHHHHhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999 59999999999999999999999999887764
No 33
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.94 E-value=5.1e-27 Score=229.09 Aligned_cols=114 Identities=28% Similarity=0.515 Sum_probs=102.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccch
Q 004272 34 RKAEEAASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSA 113 (764)
Q Consensus 34 ~~~~~~a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~ 113 (764)
.++++...+.+|+++||+.++|. ++| +.++|.++||||||||+|+|+|.||+|+||+..+ .++
T Consensus 4 ~~a~eyl~~~~e~~~WIe~~l~~----~l~---~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~----------~~~ 66 (159)
T 1p2x_A 4 LQAYDYLCRVDEAKKWIEECLGT----DLG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSN----------ELQ 66 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS----CCC---CGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCS----------SCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCC----CCC---ChHHHHHHHcchHHHHHHHHHhCCCCcccccccc----------CCc
Confidence 46777888999999999999874 444 4578999999999999999999999999998643 268
Q ss_pred hhHHHHHHHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccc
Q 004272 114 YQYFENVRNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQ 164 (764)
Q Consensus 114 f~~~ENI~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~ 164 (764)
|++||||++||+||++|||| +|++.||||++|+++|+.||+||++++.+++
T Consensus 67 f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~~Vi~~L~aL~~~~~~~g 120 (159)
T 1p2x_A 67 FRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQD 120 (159)
T ss_dssp TTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSSCSCHHHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999 5999999999999999999999999987664
No 34
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.94 E-value=3.4e-27 Score=220.26 Aligned_cols=110 Identities=24% Similarity=0.440 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVR 121 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~ 121 (764)
.++++++||+++++ +..++.+..+++++|.++||||+|||+|+|+++||+|+||+..| .++|++||||+
T Consensus 7 ~e~e~~~WI~~~~~-l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~----------~~~f~~~eNI~ 75 (121)
T 1wyr_A 7 GEEQIVTWLISLGV-LESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDP----------QTEADCINNIN 75 (121)
T ss_dssp SHHHHHHHHHHHTS-SCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSC----------CSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCC----------cchHHHHHHHH
Confidence 56789999999854 22233344455556899999999999999999999999997655 25899999999
Q ss_pred HHHHHHHhcCCCCccCCccccCCChhHHHHHHHHHHhcccc
Q 004272 122 NFLVAVQEMGLPTFEASDLEQGGKSARVVNCVLALKSYGEW 162 (764)
Q Consensus 122 ~FL~ac~~lGvp~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~ 162 (764)
+||+||+++|+..|++.||||++|+++|+.||+||++++..
T Consensus 76 ~FL~a~~~~g~~~F~~~DL~e~kn~~~V~~cL~aL~~~~~~ 116 (121)
T 1wyr_A 76 DFLKGCATLQVEIFDPDDLYSGVNFSKVLSTLLAVNKATES 116 (121)
T ss_dssp HHHHHHHHHTCCCCCHHHHHTCSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCccCHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998765
No 35
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.94 E-value=5.1e-27 Score=225.52 Aligned_cols=110 Identities=25% Similarity=0.400 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCC-CCCChHHHHHHccchhHHHHHHHhhcC---CCCC-ceecCCCccccCCccccchhh
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLP-AEPSEEEFRLGLRSGIILCNVINKVQP---GAVP-KVVESPDTVLVPDGAALSAYQ 115 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~-~~~~~e~f~~~LrdGvvLC~L~N~l~P---g~v~-ki~~~~~~~~~~~~~~~~~f~ 115 (764)
.+++|+++||+.++|. +++ .+++.++|.++||||+|||+|+|+|+| |+|+ ||+.+. ++|+
T Consensus 9 ~~e~e~~~WIe~~l~~----~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~-----------~~f~ 73 (144)
T 1ujo_A 9 ELEERLVEWIVVQCGP----DVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPS-----------MVFK 73 (144)
T ss_dssp HHHHHHHHHHHHHHCT----TTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCC-----------SHHH
T ss_pred HHHHHHHHHHHHHhCC----CCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCC-----------chhH
Confidence 4567899999999874 443 345568999999999999999999999 8998 887544 6899
Q ss_pred HHHHHHHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhccccccc
Q 004272 116 YFENVRNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQT 165 (764)
Q Consensus 116 ~~ENI~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~ 165 (764)
+||||++||+||++|||| +|++.||||++|+.+|+.||+||++++..+..
T Consensus 74 ~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~V~~cL~aL~~~a~~~~~ 126 (144)
T 1ujo_A 74 QMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVTKND 126 (144)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCcCccccCChhHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999 69999999999999999999999999998764
No 36
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=1.2e-27 Score=215.05 Aligned_cols=83 Identities=47% Similarity=0.687 Sum_probs=77.3
Q ss_pred HHhhHhHHHHHHHHHHHhcc-CCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCcc
Q 004272 646 QHINRSLSALGDVIASLAQK-NPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAA 724 (764)
Q Consensus 646 ~~INkSLsaLg~VI~aLa~k-~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~ 724 (764)
.+||+||++||+||.+|+++ ..||||||||||+||||+||||++|+||+||||+..+++||++||+||+|++.|++.+
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~- 80 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV- 80 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE-
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc-
Confidence 57999999999999999987 6899999999999999999999999999999999999999999999999999999754
Q ss_pred cccCC
Q 004272 725 RVNKD 729 (764)
Q Consensus 725 ~~n~~ 729 (764)
.+|.+
T Consensus 81 ~~n~~ 85 (100)
T 2kin_B 81 SVNLE 85 (100)
T ss_dssp CCEEE
T ss_pred eeccC
Confidence 45554
No 37
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.93 E-value=5.3e-27 Score=235.23 Aligned_cols=131 Identities=28% Similarity=0.402 Sum_probs=106.9
Q ss_pred CCCCCCCchHHH----HHHHHhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCC--Ccee
Q 004272 24 NRPRDLDLESRK----AEEAASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV--PKVV 97 (764)
Q Consensus 24 ~r~~~~~la~~~----~~~~a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v--~ki~ 97 (764)
.|.++++|++++ +++...+.+++++||+.++|. ++| +.++|.++||||||||+|+|+|.||+| +||+
T Consensus 4 ~~~~~~~md~~~~~k~a~~y~~~~~e~~~WIe~~lg~----~lp---~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~ 76 (190)
T 2rr8_A 4 GSLTAEEMDERRRQNVAYEYLCHLEEAKRWMEACLGE----DLP---PTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIY 76 (190)
T ss_dssp CCCCCCCSSSSCSCHHHHHHHHHHHHHHHHHHHHSCC----CCC---CHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSS
T ss_pred cccChhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhCC----CCC---ChhHHHHHHcchhhHHHHHHHhCCCCccccccc
Confidence 678888885544 444456668999999999874 443 468999999999999999999999999 5886
Q ss_pred cCCCccccCCccccchhhHHHHHHHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccc
Q 004272 98 ESPDTVLVPDGAALSAYQYFENVRNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQ 164 (764)
Q Consensus 98 ~~~~~~~~~~~~~~~~f~~~ENI~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~ 164 (764)
..+.. .+ +.+.++|++||||++||+||++|||| +|++.||||++|+++|+.||+||++++..++
T Consensus 77 ~~~~~-~~--~~~~~~f~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~Vi~cL~aL~~~a~~~g 143 (190)
T 2rr8_A 77 DREQT-RY--KATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLG 143 (190)
T ss_dssp TTTCH-HH--HHTCCCSSTHHHHHHHHHGGGGTTCCSTTCCCHHHHTCTTCCHHHHHHHHHHHHHHHHSS
T ss_pred ccccc-cc--cCCCCcchHHHHHHHHHHHHHHcCCCccccCCHHHHHhcCCHHHHHHHHHHHHHHHHHCC
Confidence 55410 00 11235899999999999999999999 5999999999999999999999999987654
No 38
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.93 E-value=3.4e-26 Score=229.41 Aligned_cols=130 Identities=28% Similarity=0.421 Sum_probs=103.2
Q ss_pred CCCCCCCchHHHHHH----HHhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--cee
Q 004272 24 NRPRDLDLESRKAEE----AASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVV 97 (764)
Q Consensus 24 ~r~~~~~la~~~~~~----~a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~ 97 (764)
.|.+...|+.++..+ ...+.+|++.||+.++|. ++| ++++|.++||||+|||+|+|+|+||+|+ ||+
T Consensus 26 ~~~~~~~md~~r~~~~a~eyl~~~~e~~~WIe~~lg~----~l~---~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~ 98 (193)
T 3i6x_A 26 ERLTAEEMDERRRQNVAYEYLCHLEEAKRWMEACLGE----DLP---PTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIY 98 (193)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCC---CGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGST
T ss_pred cccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC----CCC---ChHHHHHHhccHHHHHHHHHHHCCCCCCccccC
Confidence 677888887555443 346677999999999873 443 3568999999999999999999999996 887
Q ss_pred cCCCccccCCccccchhhHHHHHHHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhccccc
Q 004272 98 ESPDTVLVPDGAALSAYQYFENVRNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWK 163 (764)
Q Consensus 98 ~~~~~~~~~~~~~~~~f~~~ENI~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k 163 (764)
.++.. .+ +.+.++|++||||++||+||+++||| +|++.|||+++|+++|+.||++|++++..+
T Consensus 99 ~~~~~-~~--~~~~~~F~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~V~~cL~aL~~~a~~~ 164 (193)
T 3i6x_A 99 DREQT-RY--KATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKL 164 (193)
T ss_dssp TTTCH-HH--HHSCCCGGGHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHT
T ss_pred Ccccc-cc--cCcccchHHHHHHHHHHHHHHHcCCCcccCCCcHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 64410 00 12236899999999999999999999 599999999999999999999999988754
No 39
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.93 E-value=1.5e-26 Score=220.25 Aligned_cols=103 Identities=38% Similarity=0.647 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVR 121 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~ 121 (764)
++.++++||+.++|. ++ +++|.++||||+|||+|+|+|.||+|++|+.++ ++|+++|||+
T Consensus 18 ~~~e~~~WIe~~l~~----~~-----~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~-----------~~f~~~eNI~ 77 (136)
T 1wyp_A 18 REQELREWIEGVTGR----RI-----GNNFMDGLKDGIILCEFINKLQPGSVKKINEST-----------QNWHQLENIG 77 (136)
T ss_dssp HHHHHHHHHHHHTCC----CC-----CSCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSS-----------CSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----CC-----cHHHHHHHccHHhHHHHHHhhCCCCcccccccc-----------cchHHHHHHH
Confidence 457999999999874 33 257999999999999999999999999997655 6899999999
Q ss_pred HHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccc
Q 004272 122 NFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQ 164 (764)
Q Consensus 122 ~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~ 164 (764)
+||+||+++||| +|++.||||++|+++|+.||+||++++.+++
T Consensus 78 ~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g 123 (136)
T 1wyp_A 78 NFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKG 123 (136)
T ss_dssp HHHHHHHHHTCCGGGCCCHHHHHSCSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccccCchHHhcCCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999 6999999999999999999999999998876
No 40
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.92 E-value=5.3e-26 Score=218.87 Aligned_cols=103 Identities=35% Similarity=0.653 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVR 121 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~ 121 (764)
++.++++||+.++|. ++ +++|.++||||+|||+|+|+|.||+|++|+.++ ++|+++|||+
T Consensus 18 ~~~e~~~WIe~~l~~----~i-----~~~l~~~L~DGvvLCkL~N~l~P~~v~kin~~~-----------~~f~~~eNI~ 77 (146)
T 1wyn_A 18 KEAELRTWIEGLTGL----SI-----GPDFQKGLKDGTILCTLMNKLQPGSVPKINRSM-----------QNWHQLENLS 77 (146)
T ss_dssp HHHHHHHHHHHHHCC----CC-----CSCHHHHHHTTSHHHHHHHHHCTTSCSCCCCSS-----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----CC-----cHHHHHHHccHHHHHHHHHHhCCCCcccccccc-----------ccccHHHHHH
Confidence 457999999999874 33 257999999999999999999999999998765 6899999999
Q ss_pred HHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccc
Q 004272 122 NFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQ 164 (764)
Q Consensus 122 ~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~ 164 (764)
+||+||+++||| +|++.||||++|+++|+.||+||++++..++
T Consensus 78 ~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g 123 (146)
T 1wyn_A 78 NFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKG 123 (146)
T ss_dssp HHHHHHHHHTCCSSSCCCHHHHHTCSCSHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHcCCCcccccChhHHHhcCChHHHHHHHHHHHHHHHhCC
Confidence 999999999999 6999999999999999999999999987654
No 41
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.92 E-value=1.1e-25 Score=227.58 Aligned_cols=107 Identities=29% Similarity=0.554 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
.+++|+++||+.++|. ++| +.++|.++||||+|||+|+|+|.||+|+||+..+ .++|+++|||
T Consensus 55 ~~~~e~~~WIe~~l~~----~l~---~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s----------~~~f~~~eNI 117 (203)
T 1p5s_A 55 CRVDEAKKWIEECLGT----DLG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSN----------ELQFRHSDNI 117 (203)
T ss_dssp HHHHHHHHHHHHHHTS----CCC---CGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCS----------SSCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCC----CCC---ChHHHHHHHcchHHHHHHHHHhCCCCcccccCCC----------CCcchHHHHH
Confidence 5678999999999873 443 5579999999999999999999999999996543 2589999999
Q ss_pred HHHHHHHHhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccc
Q 004272 121 RNFLVAVQEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQ 164 (764)
Q Consensus 121 ~~FL~ac~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~ 164 (764)
++||+||++|||| +|++.||||++|+++|+.||+||++++..++
T Consensus 118 ~~FL~ac~~~Gvp~~~lF~t~DL~e~kn~~~Vi~~L~aL~~~a~~~g 164 (203)
T 1p5s_A 118 NKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQD 164 (203)
T ss_dssp HHHHHHHHHTTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999 5999999999999999999999999987664
No 42
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.92 E-value=1e-25 Score=208.71 Aligned_cols=80 Identities=49% Similarity=0.711 Sum_probs=74.6
Q ss_pred hHhHHHHHHHHHHHhccC-CCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHHHHHHhcccccCccccc
Q 004272 649 NRSLSALGDVIASLAQKN-PHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLKFAERVATVELGAARVN 727 (764)
Q Consensus 649 NkSLsaLg~VI~aLa~k~-~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~FA~r~~~v~~g~~~~n 727 (764)
|+||++||+||.+|+++. .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|++.|++. +.+|
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~-~~~n 79 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNT-VSVN 79 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEE-ECCC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCC-ceec
Confidence 899999999999999874 69999999999999999999999999999999999999999999999999999875 4455
Q ss_pred CC
Q 004272 728 KD 729 (764)
Q Consensus 728 ~~ 729 (764)
.+
T Consensus 80 ~~ 81 (117)
T 3kin_B 80 LE 81 (117)
T ss_dssp BC
T ss_pred Cc
Confidence 54
No 43
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.82 E-value=1.8e-20 Score=217.99 Aligned_cols=116 Identities=26% Similarity=0.406 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhhhcCCCC--CCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHHH
Q 004272 45 EAAGWLRKMVGVVAARDLP--AEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 45 e~~~Wl~~~lg~~~~~~l~--~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
|+++||+++ ++++..... .+.+.++|.++||||++||+|+|+|+||+|+ +|+..|. .++|++||||
T Consensus 9 ~~~~Wl~~~-~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~---------~~~f~~~~ni 78 (587)
T 3ky9_A 9 QCTHWLIQC-RVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQ---------MSQFLCLKNI 78 (587)
T ss_dssp HHHHHHHHT-TCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCT---------TBHHHHHHHH
T ss_pred HHHHHHHHh-CCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCcc---------ccchHHHHHH
Confidence 799999998 445543222 3566789999999999999999999999995 6765442 2579999999
Q ss_pred HHHHHHH-HhcCCC---CccCCccccCCChhHHHHHHHHHHhcccccccCCCCc
Q 004272 121 RNFLVAV-QEMGLP---TFEASDLEQGGKSARVVNCVLALKSYGEWKQTGGNGV 170 (764)
Q Consensus 121 ~~FL~ac-~~lGvp---~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g~~g~ 170 (764)
++||+|| +++||| +|+++|||+++|+++|+.||++|++.+.++..|..|+
T Consensus 79 ~~Fl~~~~~~~g~~~~~~f~~~Dl~~~~~~~~V~~~l~~l~~~~~~~~~g~~~f 132 (587)
T 3ky9_A 79 RTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPIAQNRGIMPF 132 (587)
T ss_dssp HHHHHHHHHTTCCCTTSSCCHHHHHTCSCHHHHHHHHHHHHHSTTTGGGTCCCC
T ss_pred HHHHHHHHHHcCCCHHHcCCchhhhccCCcchHHHHHHHHhhhhhhhccCCCCC
Confidence 9999999 899999 6999999999999999999999999888887766543
No 44
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=123.32 Aligned_cols=106 Identities=14% Similarity=0.304 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
..+.....||+..++... .+ +...+|.+.|+||++||+|+|.|.|+.+++++..| .+.|+.+|||
T Consensus 18 ~q~~~f~~WIN~~L~~~~---~~--~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p----------~~~~~~~eNv 82 (129)
T 2yrn_A 18 DQKRIYTDWANHYLAKSG---HK--RLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCP----------KNRSQMIENI 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHTC---CC--SCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSC----------CSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccC---CC--ccchhHHHHcccHHHHHHHHHHHhcCCcccccCCC----------CcHHHHHHHH
Confidence 344588999999988531 11 12357999999999999999999999999887655 2689999999
Q ss_pred HHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhcccc
Q 004272 121 RNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYGEW 162 (764)
Q Consensus 121 ~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~~~~ 162 (764)
..||.+++.+|++. ..+.|+++ +|...|+.+|.+|.+|.+.
T Consensus 83 ~~aL~~~~~~gv~~~~i~~~DI~d-gn~~~iL~Llw~L~r~~q~ 125 (129)
T 2yrn_A 83 DACLNFLAAKGINIQGLSAEEIRN-GNLKAILGLFFSLSRYKQQ 125 (129)
T ss_dssp HHHHHHHHHHTCCCTTCCHHHHHH-TCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCcccCCChhhhhc-CCHhHHHHHHHHHHHHHhh
Confidence 99999999999984 88999998 7899999999999987653
No 45
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=99.11 E-value=1.7e-10 Score=107.33 Aligned_cols=102 Identities=20% Similarity=0.349 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
|.|+..||+++++. +++ . . +.|+||+++|+|+|.|.||+|+ ||+-.+. ..|.+++|+
T Consensus 7 r~ElL~WIN~~L~~----~~~--k-i----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~----------~e~e~~~N~ 65 (123)
T 2qjz_A 7 RHDMLAWINESLQL----NLT--K-I----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAK----------LEHEYIQNF 65 (123)
T ss_dssp HHHHHHHHHHHHTC----CCC--C-G----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCC----------SHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----CCc--h-H----HHcCchHHHHHHHHHHccCCCcHHHhccCCC----------ChHHHHHHH
Confidence 57899999999874 333 1 1 4699999999999999999999 8873331 689999999
Q ss_pred HHHHHHHHhcCCC-CccCCccccCCChhHHHHHHHHHHhcccccccC
Q 004272 121 RNFLVAVQEMGLP-TFEASDLEQGGKSARVVNCVLALKSYGEWKQTG 166 (764)
Q Consensus 121 ~~FL~ac~~lGvp-~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g 166 (764)
+.|..++.++||| .+.+..|..|+. ..=+.=|.-+++|......|
T Consensus 66 k~lq~af~k~gV~k~i~v~kLvkgk~-qdnleflqW~k~f~d~n~~~ 111 (123)
T 2qjz_A 66 KILQAGFKRMGVDKIIPVDKLVKGKF-QDNFEFVQWFKKFFDANYDG 111 (123)
T ss_dssp HHHHHHHHHHTCCCCCCHHHHTTCCH-HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCccCHHHHHcCCc-hhHHHHHHHHHHHHHHcCCC
Confidence 9999999999999 588888988873 34566667777776665543
No 46
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3e-10 Score=109.68 Aligned_cols=103 Identities=19% Similarity=0.325 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
-|.|+..||+++++. +++ . .+.|+||+++|+|+|.|.||+|+ ||+-.+. ..|.+++|
T Consensus 23 sr~ElL~WIN~~L~~----~~~--k-----iE~L~~GaayCQLmd~L~PgsV~l~KVkf~a~----------~e~e~~~N 81 (159)
T 1wyo_A 23 SRHDMLAWVNDSLHL----NYT--K-----IEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAK----------LEHEYIHN 81 (159)
T ss_dssp CHHHHHHHHHHHSCC----CCS--S-----GGGGGGCHHHHHHHHHHSTTSSCTTSCCTTCC----------SSHHHHHH
T ss_pred hHHHHHHHHHHHHCC----CCc--h-----hhhcCccHHHHHHHHHHccCCCcHhhhccCCC----------ChHHHHHH
Confidence 467899999999873 333 1 15699999999999999999999 8873331 68999999
Q ss_pred HHHHHHHHHhcCCC-CccCCccccCCChhHHHHHHHHHHhcccccccC
Q 004272 120 VRNFLVAVQEMGLP-TFEASDLEQGGKSARVVNCVLALKSYGEWKQTG 166 (764)
Q Consensus 120 I~~FL~ac~~lGvp-~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g 166 (764)
|+.|..++.++||+ .+.+..|..|+. ..=+.=|..+++|......|
T Consensus 82 ~k~lQ~af~k~gV~k~ipV~kLvkgk~-qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 82 FKVLQAAFKKMGVDKIIPVEKLVKGKF-QDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp HHHHHHHHHHHTCCCCCCHHHHTTTCS-HHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCCCccCHHHHhcCCc-hhHHHHHHHHHHHHHHcCCC
Confidence 99999999999999 599999998884 34566677777777765544
No 47
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.04 E-value=2.8e-10 Score=130.04 Aligned_cols=97 Identities=21% Similarity=0.381 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHHhhhh--cCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCC--CceecCCCccccCCccccchhhH
Q 004272 41 SRRYEAAGWLRKMVGVVA--ARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV--PKVVESPDTVLVPDGAALSAYQY 116 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~--~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v--~ki~~~~~~~~~~~~~~~~~f~~ 116 (764)
..+....+||+..++.-+ ..-+|.++...+|.+.|+||++||+|+|.+.||+| ++|+.++ .++.|++
T Consensus 7 ~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~---------~~~~~~~ 77 (506)
T 1pxy_A 7 SEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKR---------VLNPWER 77 (506)
T ss_dssp CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCS---------SCCHHHH
T ss_pred HHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccc---------cccHHHH
Confidence 456788999999987531 11246667778999999999999999999999999 6776654 1257999
Q ss_pred HHHHHHHHHHHHhcCCCC--ccCCccccCCCh
Q 004272 117 FENVRNFLVAVQEMGLPT--FEASDLEQGGKS 146 (764)
Q Consensus 117 ~ENI~~FL~ac~~lGvp~--Fe~~DL~eg~n~ 146 (764)
+|||+.||.+|+.+|++. ..+.||++|++.
T Consensus 78 ~eNi~~~L~~~k~~g~~~~~i~~~Dl~dg~~~ 109 (506)
T 1pxy_A 78 NENHTLCLNSAKAVGCSVVNIGTQDLAEGRPH 109 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCCHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCcCCCCHHHHhcCChH
Confidence 999999999999999993 799999999874
No 48
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=98.98 E-value=7.5e-10 Score=116.99 Aligned_cols=107 Identities=21% Similarity=0.410 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHhhhhc--CCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhH
Q 004272 41 SRRYEAAGWLRKMVGVVAA--RDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQY 116 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~--~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~ 116 (764)
..+.....||+..++.-.. ..+|.++...+|.+.|+||++||+|+|.+.||.|+ +++.++ ++.|++
T Consensus 24 ~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~----------~~~~~~ 93 (275)
T 1aoa_A 24 EEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKK----------LTPFII 93 (275)
T ss_dssp HHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSS----------CCHHHH
T ss_pred HHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCC----------CCHHHH
Confidence 3456888999988764211 11355556689999999999999999999999997 665433 257999
Q ss_pred HHHHHHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHh
Q 004272 117 FENVRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKS 158 (764)
Q Consensus 117 ~ENI~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~ 158 (764)
+|||+.||.+++.+|++. +.+.||++|.- ..++.-|..|-+
T Consensus 94 ~eNv~~aL~~~k~~g~~l~~I~~~DIvdg~~-~liLgLlw~li~ 136 (275)
T 1aoa_A 94 QENLNLALNSASAIGCHVVNIGAEDLRAGKP-HLVLGLLWQIIK 136 (275)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCCHHHHHTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccCCCHHHHHcCcH-HHHHHHHHHHHH
Confidence 999999999999999994 89999999863 345555555554
No 49
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.87 E-value=1.5e-09 Score=113.36 Aligned_cols=100 Identities=13% Similarity=0.232 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
..+.....||+..++... +...+|.+.|+||++||+|+|.|.|+.++++..+ .+.|+++|||
T Consensus 27 ~q~~~f~~WiN~~L~~~~-------~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~-----------~~~~~~~eNi 88 (254)
T 1wku_A 27 QQRKTFTAWCNSHLRKAG-------TQIENIEEDFRNGLKLMLLLEVISGERLPRPDKG-----------KMRFHKIANV 88 (254)
T ss_dssp HHHHHHHHHHHHHHGGGT-------CCCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCSC-----------CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccC-------CCccCHHHHccCHHHHHHHHHHhCcCCCCCCCCC-----------ccHHHHHHhH
Confidence 445688999999987421 2335799999999999999999999999885322 2689999999
Q ss_pred HHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhc
Q 004272 121 RNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSY 159 (764)
Q Consensus 121 ~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~ 159 (764)
+.||.+++.+|+++ ..+.|+++| |...++.-|-.|-++
T Consensus 89 ~~aL~~~k~~gv~lv~I~~~DIvdG-~~kliLgLlW~li~~ 128 (254)
T 1wku_A 89 NKALDFIASKGVKLVSIGAEEIVDG-NLKMTLGMIWTIILR 128 (254)
T ss_dssp HHHHHHHHTTTCCCCSCCHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCCHHHHhcc-chHHHHHHHHHHHHH
Confidence 99999999999994 899999988 455566656566543
No 50
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.79 E-value=6.2e-09 Score=119.14 Aligned_cols=112 Identities=18% Similarity=0.280 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHhhhhc--CCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhH
Q 004272 41 SRRYEAAGWLRKMVGVVAA--RDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQY 116 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~--~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~ 116 (764)
..+.+...||+..++.-.. ..+|.++...+|.+.|+||++||+|+|.+.||+|. +++.++ .+.+.+.|++
T Consensus 12 ~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~------~~~~~~~~~~ 85 (513)
T 1rt8_A 12 EERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQR------NNKPLDNFKC 85 (513)
T ss_dssp HHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---------CCCHHHH
T ss_pred HHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCcc------ccCcccHHHH
Confidence 4456889999998874211 11456666789999999999999999999999994 565432 2233578999
Q ss_pred HHHHHHHHHHHHhcCC-C--CccCCccccCCChhHHHHHHHHHHhc
Q 004272 117 FENVRNFLVAVQEMGL-P--TFEASDLEQGGKSARVVNCVLALKSY 159 (764)
Q Consensus 117 ~ENI~~FL~ac~~lGv-p--~Fe~~DL~eg~n~~kVv~cL~aL~~~ 159 (764)
+|||+.||.+++.+|+ . .|.+.||++|.. ..++.-|-.|-++
T Consensus 86 ~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~~-~liLgLiW~li~~ 130 (513)
T 1rt8_A 86 IENNNVVINSAKAMGGISITNIGAGDILEGRE-HLILGLVWQIIRR 130 (513)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCCcCHHhhhcCCH-HHHHHHHHHHHHH
Confidence 9999999999999999 4 599999999873 3455555555543
No 51
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=98.70 E-value=9e-09 Score=106.99 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCC-CceecCCCccccCCccccchhhHHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV-PKVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v-~ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
.++.....||+..++.. .+...+|.+.|+||++||+|+|.|.|+.+ ++++.+|. +.|+.+||
T Consensus 20 ~q~~~f~~WiN~~L~~~-------~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~----------~~~~~~eN 82 (245)
T 2wa7_A 20 IQQNTFTRWCNEHLKCV-------NKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPT----------FRQMQLEN 82 (245)
T ss_dssp HHHHHHHHHHHHHHGGG-------TCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCC----------SHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc-------CCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCC----------cHHHHHHH
Confidence 44557899999998632 12334688899999999999999999999 77776552 57999999
Q ss_pred HHHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhcc
Q 004272 120 VRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYG 160 (764)
Q Consensus 120 I~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~~ 160 (764)
|+.||.+++.+|++. ..+.|+++|. ...++.=|..|-++.
T Consensus 83 v~~aL~~~k~~g~~lv~I~~~DIvdG~-~kliLgLlW~li~~~ 124 (245)
T 2wa7_A 83 VSVALEFLDRESIKLVSIDSKAIVDGN-LKLILGLVWTLILHY 124 (245)
T ss_dssp HHHHHHHHHHTTCCCCSCCHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccCCCHHHhhCCC-HHHHHHHHHHHHHHH
Confidence 999999999999984 8999999986 344555555555443
No 52
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=98.57 E-value=7.7e-08 Score=99.85 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=80.7
Q ss_pred HhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHH
Q 004272 40 ASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 40 a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
...+.....||...++.-. ..|..+...+|.+.|+||++||+|+|.|.|+.+++. .+ .+.|+.+||
T Consensus 11 ~~q~~~f~~WiN~~L~~~~--~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~--~~----------~~~~~~~eN 76 (245)
T 1sh5_A 11 RVQKKTFTKWVNKHLIKHW--RAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE--KG----------RMRFHKLQN 76 (245)
T ss_dssp HHHHHHHHHHHHHHHTTCS--SGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC--CC----------CSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc--cccCCCCccchHhhccCHHHHHHHHHHhcCccccCC--CC----------cchHHHHHh
Confidence 4556678899999986411 011233446789999999999999999999998852 12 268999999
Q ss_pred HHHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhccc
Q 004272 120 VRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYGE 161 (764)
Q Consensus 120 I~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~~~ 161 (764)
|+.||.+++..|+++ ..+.|+++|. ...++.-|..|-++..
T Consensus 77 v~~aL~~~k~~g~~l~~I~~~DIvdg~-~k~iLgLlw~li~~~~ 119 (245)
T 1sh5_A 77 VQIALDYLRHRQVKLVNIRNDDIADGN-PKLTLGLIWTIILHFQ 119 (245)
T ss_dssp HHHHHHHHHHTTCCCCSCCHHHHHTTC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcccCCChHhhhccc-HHHHHHHHHHHHHhhc
Confidence 999999999999984 8999999985 4456666666665433
No 53
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=98.56 E-value=5.8e-08 Score=100.90 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=77.1
Q ss_pred HhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHH
Q 004272 40 ASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 40 a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
...+.....||...++... . +...+|.+.|+||++||+|+|.|.|+.+++.. + .+.|+.+||
T Consensus 15 ~~q~~~f~~WiN~~L~~~~---~---~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~~--~----------~~~~~~~eN 76 (246)
T 1dxx_A 15 DVQKKTFTKWVNAQFSKFG---K---QHIENLFSDLQDGRRLLDLLEGLTGQKLPKEK--G----------STRVHALNN 76 (246)
T ss_dssp HHHHHHHHHHHHHHHHHTT---C---CCCSCTTTTTTTSHHHHHHHHHHHSCCCCCCC--C----------SSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccC---C---CCccCHHHHhCcHHHHHHHHHHHcCCcCCCCC--C----------ccHHHHHHH
Confidence 3455678899999987421 1 13356888899999999999999999887631 2 268999999
Q ss_pred HHHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHh
Q 004272 120 VRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKS 158 (764)
Q Consensus 120 I~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~ 158 (764)
|+.||.+++.+|+++ +.+.|+++|. ...++.=|..|-.
T Consensus 77 v~~aL~~~k~~g~~l~~I~~~DIvdg~-~~liL~Llw~li~ 116 (246)
T 1dxx_A 77 VNKALRVLQNNNVDLVNIGSTDIVDGN-HKLTLGLIWNIIL 116 (246)
T ss_dssp HHHHHHHHHHTTCCCTTCCHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccCCHHHhhccc-HHHHHHHHHHHHH
Confidence 999999999999984 9999999985 3445555555543
No 54
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.53 E-value=1e-07 Score=101.60 Aligned_cols=103 Identities=12% Similarity=0.181 Sum_probs=82.2
Q ss_pred HHhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHH
Q 004272 39 AASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFE 118 (764)
Q Consensus 39 ~a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~E 118 (764)
...++.....||+..++... +...+|.+.|+||++||+|+|.|.|+.+++. .+ .+.|+.+|
T Consensus 71 ~~vQkktft~WINs~L~~~~-------~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~~--~~----------~~r~~kle 131 (296)
T 3f7p_A 71 DRVQKKTFTKWVNKHLIKAQ-------RHISDLYEDLRDGHNLISLLEVLSGDSLPRE--KG----------RMRFHKLQ 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHGGGT-------CCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC--CC----------SSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCC-------CCcccHHHHHhhHHHHHHHHHHhcCCccccc--CC----------cChhhhhh
Confidence 34556678899999986421 2335688999999999999999999999862 12 26899999
Q ss_pred HHHHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhccc
Q 004272 119 NVRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYGE 161 (764)
Q Consensus 119 NI~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~~~ 161 (764)
||+.+|.+++..|+++ ..+.|+.+| |...++.-|..|-++..
T Consensus 132 Nvn~aL~~lk~~gv~lv~I~~~DIvdG-n~kliLgLlW~Li~~~~ 175 (296)
T 3f7p_A 132 NVQIALDYLRHRQVKLVNIRNDDIADG-NPKLTLGLIWTIILHFQ 175 (296)
T ss_dssp HHHHHHHHHHHTTCCCTTCCHHHHHTT-CHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCccccCCChhhhhcc-chHHHHHHHHHhhcccc
Confidence 9999999999999984 889999998 66778877777776544
No 55
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.6e-06 Score=88.70 Aligned_cols=305 Identities=15% Similarity=0.231 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHhhhhhhhhccCCCEEEEEEeCCC
Q 004272 325 FDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPF 404 (764)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~r~l~n~~~~lkg~IrV~~RVRP~ 404 (764)
+....+|++.++...+..+..+...++.|.++++.++.+. ..||+|-|.+.|+||.||+|+=+-+-
T Consensus 5 ~~~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~--------------lrRRkLENSIdElKG~IRcFAYi~~~ 70 (333)
T 4etp_B 5 IAALEKEIAALEKEIAALEKEISKQEKFYNDTYNTVCKEL--------------LRSRRLENSIIEQKGTMRVYAYVMEQ 70 (333)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTCCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhHHHhcCcEEEEEEECcc
Confidence 4455677778888888777777778888888777766432 45899999999999999999999873
Q ss_pred CCCCCCCCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCCC--ChHhHHhhhHHHHHHHH-CCCCeEEEeeccCCCC
Q 004272 405 LSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPSA--TQAEVFSDMQPLIRSVL-DGYNVCIFAYGQTGSG 481 (764)
Q Consensus 405 ~~~e~~~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~a--tQ~eVf~~v~plV~svl-~G~N~~IfaYGqTGSG 481 (764)
..++ ..-....+.+|+ + +...+.|.|++|++... .+..+|++.+..++.++ .+.|+.||..|+.-
T Consensus 71 ~~p~----~~~idY~~~~It--~----~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~-- 138 (333)
T 4etp_B 71 NLPE----NLLFDYENGVIT--Q----GLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP-- 138 (333)
T ss_dssp SCCS----SCEEETTTTEEE--C------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC--
T ss_pred cCCc----cEEEecccceEe--e----cCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC--
Confidence 2221 222344556664 1 12468999999997766 56667788999999999 89999999988541
Q ss_pred CceEecCCCCCCcccccchHHHHHHHHHHHhhhc--cceEEEEEEEEEEEeCCe-eeeccCCCCCCC----ceeEeecCC
Q 004272 482 KTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRK--DIFRYDVAVQMLEIYNEQ-VRDLLVTDGSNR----RLEIRNSSQ 554 (764)
Q Consensus 482 KTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~--~~~~~~V~vS~~EIYnE~-V~DLL~~~~~~~----~l~ir~~~~ 554 (764)
|+ ..-..|+..+.... -.+.|.++++|+.+-++. ..|||.+..... .+.+.+++
T Consensus 139 ---------------w~---~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee~s- 199 (333)
T 4etp_B 139 ---------------HG---SLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHS- 199 (333)
T ss_dssp ---------------CC---HHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------CEEETTE-
T ss_pred ---------------cH---HHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEEeecce-
Confidence 11 12233333333220 126799999998888776 799997753222 23333321
Q ss_pred CCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCC---ceEEEEEEEEecCCCcC
Q 004272 555 TGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSG---TMYRGCMHLVDLAGSER 631 (764)
Q Consensus 555 ~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~---~~~~s~L~lVDLAGSEr 631 (764)
+ --+-+.+.+.+..+.+.++.. ..+.-+. -...-.|+.+++...+.... ....-..+||.+-+..
T Consensus 200 --I-~ldS~~i~i~~~~~~l~~~~k-------l~~~~~~-~~~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~- 267 (333)
T 4etp_B 200 --I-SLDSKLVIIENGLEDLPLNFS-------ADEHPNL-PHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK- 267 (333)
T ss_dssp --E-ECCSCCEEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC--------CCCEEEEEEEECSHH-
T ss_pred --E-eecceEEEeccccccchhhhc-------cccCCCC-CCCCceEEEEEEEecCcccccccCCcceeEEEEEecChh-
Confidence 1 113334455544432221110 0000000 11234566666655442211 1122367888876533
Q ss_pred ccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEeeCCCCCCHHHHHHHHH
Q 004272 632 VNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETISTLK 711 (764)
Q Consensus 632 ~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETlsTL~ 711 (764)
.+..|.++|.- . -.-.|+.+-+|+-.| -..|.++++++.-... .-.-|.
T Consensus 268 -------------------ti~~l~~~i~~----~---~~~~spi~~ilkkLl-~~TKS~flfnl~~~~~----~~~lL~ 316 (333)
T 4etp_B 268 -------------------SIEQFDKSIFK----K---ESAETPIALVLKKLI-SDTKSFFLLNLNDSKN----VNKLLT 316 (333)
T ss_dssp -------------------HHHHHHSCC-----------CCCCHHHHHHHHHH-HHSBCEEEEEECCSTT----HHHHHH
T ss_pred -------------------HHHHHHhhcCc----c---cccCCCHHHHHHHHH-hhCcceEEEEcCCcch----hHHHHH
Confidence 12233332221 1 244677888887655 4567889999976644 223445
Q ss_pred HHHHhc
Q 004272 712 FAERVA 717 (764)
Q Consensus 712 FA~r~~ 717 (764)
.+.++.
T Consensus 317 is~~i~ 322 (333)
T 4etp_B 317 ISEEVQ 322 (333)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 56
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.40 E-value=5.7e-07 Score=102.94 Aligned_cols=106 Identities=23% Similarity=0.390 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCC--CceecCCCccccCCccccchhhHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV--PKVVESPDTVLVPDGAALSAYQYFE 118 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v--~ki~~~~~~~~~~~~~~~~~f~~~E 118 (764)
..+.....||+.. +. .+...+|.+.|+||++||+|++++.||.+ ++++..|. .|...+.|+.+|
T Consensus 285 ~q~k~f~~WiN~~-~~--------~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~-----~~~~~~r~~~~e 350 (513)
T 1rt8_A 285 REARVFTLWLNSL-DV--------TPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPA-----SGDEMMRFKAVE 350 (513)
T ss_dssp HHHHHHHHHHHHT-TC--------SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCT-----TSCCCCHHHHHH
T ss_pred HHHHHHHHHHHhc-CC--------CCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcc-----cccccchHHHHH
Confidence 3456788899987 21 12345799999999999999999999988 57766541 232347899999
Q ss_pred HHHHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhccc
Q 004272 119 NVRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYGE 161 (764)
Q Consensus 119 NI~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~~~ 161 (764)
||+.+|.+++.+|+++ +.+.|+++|. ...++.=|-.|.++..
T Consensus 351 Nv~~al~~~~~~gv~lv~i~~~DIvdg~-~~~~LgLlW~li~~~~ 394 (513)
T 1rt8_A 351 NCNYAVDLGKNQGFSLVGIQGADITDGS-RTLTLALVWQMMRMNI 394 (513)
T ss_dssp HHHHHHHHHHHTTCCCTTCCHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCceeeccchhhhhcCC-chhhHHHHHHHHHHHH
Confidence 9999999999999994 9999999985 4556666666655543
No 57
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=98.23 E-value=1.1e-06 Score=92.53 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCC-CceecCCCccccCCccccchhhHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAV-PKVVESPDTVLVPDGAALSAYQYFENVR 121 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v-~ki~~~~~~~~~~~~~~~~~f~~~ENI~ 121 (764)
+.....||...+... .+...+|.+.|+||++||+|++.|.|+.+ ++++..| .+.|+.+||++
T Consensus 49 kktft~WiN~~L~~~-------~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p----------~~r~~kleNv~ 111 (272)
T 3hoc_A 49 QNTFTRWCNEHLKCV-------SKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRP----------TFRQMQLENVS 111 (272)
T ss_dssp HHHHHHHHHHHHGGG-------TCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSC----------CSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-------CCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCC----------ccHHHHHHHHH
Confidence 345788999987532 23345799999999999999999999998 7776655 25789999999
Q ss_pred HHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhccc
Q 004272 122 NFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYGE 161 (764)
Q Consensus 122 ~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~~~ 161 (764)
.+|.+++..|+++ ..+.|+.+|. ...++.-|..|-.++.
T Consensus 112 ~aL~~lk~~gv~lvnI~~~DIvdGn-~kliLgLlW~Li~~~~ 152 (272)
T 3hoc_A 112 VALEFLDRESIKLVSIDSKAIVDGN-LKLILGLIWTLILHYS 152 (272)
T ss_dssp HHHHHHHHTTCCCSSCCHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhcCC-HHHHHHHHHHHHHHHh
Confidence 9999999999984 8899999874 5566666666665543
No 58
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=98.10 E-value=3.3e-06 Score=79.50 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=77.2
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchh
Q 004272 37 EEAASRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAY 114 (764)
Q Consensus 37 ~~~a~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f 114 (764)
++....+.....|+...+.... ++ ..+|..-|+||++||+|++.+.|+.++ +++..|. +.|
T Consensus 18 e~~~~q~ktft~WiN~~L~~~~---~~----v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~----------~r~ 80 (131)
T 2vzc_A 18 DKLNVVKKTLITFVNKHLNKLN---LE----VTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPD----------SFE 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGT---CC----CCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCC----------SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---Cc----ccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCC----------cHH
Confidence 3334456678899999876432 22 356999999999999999999999886 6655442 579
Q ss_pred hHHHHHHHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHH
Q 004272 115 QYFENVRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLAL 156 (764)
Q Consensus 115 ~~~ENI~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL 156 (764)
+.+||++.-|.++++.|+.+ ..+.|+.+|. ...++-=|-.|
T Consensus 81 ~kieNv~~aL~~lk~~gi~l~~I~~~DIvdGn-~kliLgLiW~l 123 (131)
T 2vzc_A 81 QKVLNVSFAFELMQDGGLEKPKPRPEDIVNCD-LKSTLRVLYNL 123 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCCCHHHhhCCC-HHhHHHHHHHH
Confidence 99999999999999999984 8999999986 33344444444
No 59
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=98.09 E-value=2.3e-06 Score=103.41 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVR 121 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~ 121 (764)
.+.....||+..++... .+ ..+|.+.|+||++||+|+|.|.|+.+++++.+ .+.|+.+|||+
T Consensus 9 q~~~f~~Win~~L~~~~---~~----v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~-----------~~~~~~~eN~~ 70 (863)
T 1sjj_A 9 QRKTFTAWCNSHLRKAG---TQ----IENIEEDFRDGLKLMLLLEVISGERLAKPERG-----------KMRVHKISNVN 70 (863)
T ss_dssp HHHHHHHHHHHHHHHHC---SC----CCCCSSTTSSCHHHHHHHHHTSCCCCCCSCCC-----------SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC---CC----ccCHHHHhcCHHHHHHHHHHhCCCceeCCCCC-----------ccHHHHHHHHH
Confidence 44578899999987532 22 24688899999999999999999999875332 26899999999
Q ss_pred HHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhccc
Q 004272 122 NFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYGE 161 (764)
Q Consensus 122 ~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~~~ 161 (764)
.+|.+++..|+++ ..+.|+.+| |...++.=|..|-++..
T Consensus 71 ~~l~~~~~~g~~~~~i~~~di~~g-~~~~~l~l~w~l~~~~~ 111 (863)
T 1sjj_A 71 KALDFIASKGVKLVSIGAEEIVDG-NVKMTLGMIWTIILRFA 111 (863)
T ss_dssp HHHHHHHHTTCCCTTCCSHHHHTT-CHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCCccCCCChHHhhcC-CHHHHHHHHHHHHHHHh
Confidence 9999999999984 899999998 45566666666655443
No 60
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=97.67 E-value=6.9e-05 Score=85.55 Aligned_cols=100 Identities=17% Similarity=0.302 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHH
Q 004272 41 SRRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFE 118 (764)
Q Consensus 41 ~r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~E 118 (764)
..+.....|+...+ ..+...+|.+-|+||++||+|++.|.|+.++ +++.+|. .+.|+.+|
T Consensus 276 ~q~ktf~~WiN~~~---------~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~---------~~r~~~le 337 (506)
T 1pxy_A 276 RDERCYRLWINSLG---------IDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPI---------KMPFRKVE 337 (506)
T ss_dssp HHHHHHHHHHTTTT---------CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSC---------CCHHHHHH
T ss_pred HHHHHHHHHHHhcC---------CCCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCcc---------ccHHHHHH
Confidence 44557888888762 1133457999999999999999999999885 4444331 26899999
Q ss_pred HHHHHHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhc
Q 004272 119 NVRNFLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSY 159 (764)
Q Consensus 119 NI~~FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~ 159 (764)
|++.+|.+++..|+.+ ..+.|+.+|. ...++.=|..|-+|
T Consensus 338 Nv~~aL~~~k~~~v~l~~I~~~dIvdg~-~kl~L~Liw~lir~ 379 (506)
T 1pxy_A 338 NCNQVIKIGKQLKFSLVNVAGNDIVQGN-KKLILGLLWQLMRF 379 (506)
T ss_dssp HHHHHHHHHHHTTCCCCSCCHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCHHHHhcCC-HHHHHHHHHHHHHH
Confidence 9999999999999984 8999999975 34455555555444
No 61
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=97.55 E-value=0.00018 Score=66.84 Aligned_cols=100 Identities=17% Similarity=0.314 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHH-HHccchhHHHHHHHhhcCCCCCce-ecCCCccccCCccccchhhHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFR-LGLRSGIILCNVINKVQPGAVPKV-VESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~-~~LrdGvvLC~L~N~l~Pg~v~ki-~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
++++..|...-+.... .. ....+|. ..|+||+.+|.|++.|.|+.|..- ...+ .+......+|.
T Consensus 9 d~~ll~W~N~kl~~~g-~~----~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~---------~L~~~d~~~Na 74 (124)
T 1wjo_A 9 DDIIVNWVNRTLSEAG-KS----TSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSG---------NLTEDDKHNNA 74 (124)
T ss_dssp CHHHHHHHHHHHHHHT-CS----CCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCS---------SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CC----cccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCC---------CCCHHHHHHHH
Confidence 5678999999886422 21 1234688 999999999999999999998521 1111 13467788999
Q ss_pred HHHHHHHHhcCCCC-ccCCccccC--CChhHHHHHHHHH
Q 004272 121 RNFLVAVQEMGLPT-FEASDLEQG--GKSARVVNCVLAL 156 (764)
Q Consensus 121 ~~FL~ac~~lGvp~-Fe~~DL~eg--~n~~kVv~cL~aL 156 (764)
+..+..++++|++. ..+.|+.++ |.+--++.||+..
T Consensus 75 ~~ais~ArklG~~~~l~pEDIve~~pK~ilt~va~l~~~ 113 (124)
T 1wjo_A 75 KYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGR 113 (124)
T ss_dssp HHHHHHHHHTCCSCCCCHHHHHHTCTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHhcCcchhhHHHHHHHHHH
Confidence 99999999999995 788899987 3344456666655
No 62
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=97.26 E-value=0.00033 Score=76.21 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC-ceecCCCccccCCccccchhhHHHHHHH
Q 004272 44 YEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP-KVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 44 ~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~-ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
.--..|+...|... + +...+|..-|+||++||+|++.|.++.+. +++..| .+.++.+||++.
T Consensus 20 ktFt~WiN~~L~~~---~----~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p----------~~r~~k~eNv~~ 82 (347)
T 4b7l_A 20 NTFTRWCNEHLKSV---N----KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP----------TFRQMQLENVSV 82 (347)
T ss_dssp HHHHHHHHHHHGGG---T----CCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSC----------CSHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcC---C----CCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCc----------ccHHHHHHHHHH
Confidence 34688999887532 1 23456899999999999999999998886 344444 157889999999
Q ss_pred HHHHHHhcCCCC--ccCCccccCCChhHHHHHHHHHHhccc
Q 004272 123 FLVAVQEMGLPT--FEASDLEQGGKSARVVNCVLALKSYGE 161 (764)
Q Consensus 123 FL~ac~~lGvp~--Fe~~DL~eg~n~~kVv~cL~aL~~~~~ 161 (764)
-|.++++.|+.+ ..+.|+.+|. ...++.-|-.|-++.+
T Consensus 83 al~~~~~~g~~lv~i~~~DIvdGn-~~liLgLiW~li~~~~ 122 (347)
T 4b7l_A 83 ALEFLDRESIKLVSIDSKAIVDGN-LKLILGLVWTLILHYS 122 (347)
T ss_dssp HHHHHHHTTCCCSSCCHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCcchhhcCC-HhhHHHHHHHHHHHHh
Confidence 999999999984 8999999974 5667777777776543
No 63
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.002 Score=59.42 Aligned_cols=97 Identities=15% Similarity=0.301 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+..|+...+..- +. ....+|-.+.+||..+|.|+++++|+.|.--.-.+ -...+|.+.
T Consensus 11 ~~~LL~W~~~~~~~y--~~----v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~-------------~~~~~n~~~ 71 (119)
T 2d89_A 11 SQSLLVWCKEVTKNY--RG----VKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP-------------QDIKENNKK 71 (119)
T ss_dssp HHHHHHHHHHHTTTC--SS----CCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT-------------TCSHHHHHH
T ss_pred HHHHHHHHHHHhccC--CC----CCCCCccccccccHHHHHHHHHHCcCcCChhhhcc-------------cCHHHHHHH
Confidence 456788999887421 11 22356889999999999999999999885211111 123578888
Q ss_pred HHHHHHhcCCC-CccCCccccC--CChhHHHHHHHHHHh
Q 004272 123 FLVAVQEMGLP-TFEASDLEQG--GKSARVVNCVLALKS 158 (764)
Q Consensus 123 FL~ac~~lGvp-~Fe~~DL~eg--~n~~kVv~cL~aL~~ 158 (764)
=+..++++|+| ..++.|+.++ -|-.-|+.-+..|-.
T Consensus 72 af~~a~~LGi~~ll~peDi~~~~~pD~ksvmtYvs~l~~ 110 (119)
T 2d89_A 72 AYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRA 110 (119)
T ss_dssp HHHHHHHHTCCCCSCHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHhccCCCcHHHHHHHHHHHHH
Confidence 77777999999 6889999865 354555555555543
No 64
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=96.80 E-value=0.0032 Score=57.77 Aligned_cols=97 Identities=14% Similarity=0.309 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVR 121 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~ 121 (764)
.++.+-.|....+.... .. ...+|-.+.+||..+|.|+++++|+.|.-- . +..-...+|++
T Consensus 8 ~~~~LL~W~q~~~~~y~--~v----~v~nFs~sw~dG~af~aLih~~~P~lid~~---~----------l~~~~~~~n~~ 68 (116)
T 1wyl_A 8 TQEELLRWCQEQTAGYP--GV----HVSDLSSSWADGLALCALVYRLQPGLLEPS---E----------LQGLGALEATA 68 (116)
T ss_dssp SHHHHHHHHHHHHHHST--TC----CCSCTTTTTTSSHHHHHHHHHHCTTSCCCS---S----------GGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhccCC--CC----CCCCccccccccHHHHHHHHHHCcCCCCHH---H----------hccCCHHHHHH
Confidence 35678889998875321 22 235688999999999999999999988521 1 11223467888
Q ss_pred HHHHHHHh-cCCC-CccCCccccCCChhHHHHHHHHHH
Q 004272 122 NFLVAVQE-MGLP-TFEASDLEQGGKSARVVNCVLALK 157 (764)
Q Consensus 122 ~FL~ac~~-lGvp-~Fe~~DL~eg~n~~kVv~cL~aL~ 157 (764)
.=+..+++ +|+| ..++.|+..+-+-.-|+.-|..|-
T Consensus 69 ~af~~Ae~~lgi~~lL~peD~~~~~d~ksv~tYvs~l~ 106 (116)
T 1wyl_A 69 WALKVAENELGITPVVSAQAVVAGSDPLGLIAYLSHFH 106 (116)
T ss_dssp HHHHHHHHTTCCCCCSCHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccccCHHHHhcCCchhHHHHHHHHHH
Confidence 88888865 9999 689999988755544444444444
No 65
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=96.23 E-value=0.0086 Score=55.83 Aligned_cols=96 Identities=14% Similarity=0.244 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+-.|+...+.... .. ...+|-.+.+||..+|.|++++.|+.+.--.-. .-...+|+..
T Consensus 9 k~~LL~W~q~~~~~y~--~v----~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~-------------~~~~~~n~~~ 69 (127)
T 1wyq_A 9 KDALLLWCQMKTAGYP--NV----NVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLK-------------KCNAHYNLQN 69 (127)
T ss_dssp THHHHHHHHHHHHTSS--SC----CCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSC-------------SSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CC----CCCCCcccccccHHHHHHHHHHCcCcCCHHHhC-------------cCCHHHHHHH
Confidence 3567789998765211 12 235688999999999999999999988521111 1123578887
Q ss_pred HHHHHH-hcCCC-CccCCccccCC-ChhHHHHHHHHHH
Q 004272 123 FLVAVQ-EMGLP-TFEASDLEQGG-KSARVVNCVLALK 157 (764)
Q Consensus 123 FL~ac~-~lGvp-~Fe~~DL~eg~-n~~kVv~cL~aL~ 157 (764)
=+..++ ++|+| .+++.|+..+. +-..|+.-|..|-
T Consensus 70 af~~Ae~~Lgi~~ll~~eDv~~~~pDeksimtYvs~l~ 107 (127)
T 1wyq_A 70 AFNLAEKELGLTKLLDPEDVNVDQPDEKSIITYVATYY 107 (127)
T ss_dssp HHHHHHHTTCCCCCSCTTTSCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHhccCCCcHHHHHHHHHHHH
Confidence 777775 89999 68999986543 2233444444343
No 66
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=96.16 E-value=0.0075 Score=54.68 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+-.|....+.... .....+|-.+.+||..+|.|+++++|+.+.--.-. .-...+|++.
T Consensus 5 k~~LL~W~q~~~~~y~------~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~-------------~~~~~~n~~~ 65 (109)
T 1bkr_A 5 KDALLLWCQMKTAGYP------NVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLK-------------KSNAHYNLQN 65 (109)
T ss_dssp HHHHHHHHHHHTTTCT------TCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCC-------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCC------CCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcC-------------cCCHHHHHHH
Confidence 4567789887764211 12345799999999999999999999988521111 1234678888
Q ss_pred HHHHHH-hcCCC-CccCCccccC
Q 004272 123 FLVAVQ-EMGLP-TFEASDLEQG 143 (764)
Q Consensus 123 FL~ac~-~lGvp-~Fe~~DL~eg 143 (764)
=+..++ ++|+| ..++.|+..+
T Consensus 66 af~~Ae~~lgi~~ll~~eDv~~~ 88 (109)
T 1bkr_A 66 AFNLAEQHLGLTKLLDPEDISVD 88 (109)
T ss_dssp HHHHHHHHHCCCCCCCHHHHSSS
T ss_pred HHHHHHHHcCCCccCCHHHccCC
Confidence 777775 89999 6888888654
No 67
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=96.14 E-value=0.0065 Score=56.73 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+-.|+...+..- . .....+|-.+.+||.++|.|+++++|+.|..-. +..-...+|++.
T Consensus 9 k~~LL~W~q~~~~~y--~----~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~-------------l~~~~~~~n~~~ 69 (128)
T 2d87_A 9 KQMLLDWCRAKTRGY--E----HVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQ-------------LSPQNRRQNFEV 69 (128)
T ss_dssp HHHHHHHHHHHSSSC--T----TCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTT-------------SCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhccC--C----CCCCCCccccccccHHHHHHHHHHCcCcCCHHH-------------cCccCHHHHHHH
Confidence 456788998876421 1 123457899999999999999999999874211 112235679998
Q ss_pred HHHHHHh-cCCC-CccCCccccCC--ChhHHHHHHHHHHhcc
Q 004272 123 FLVAVQE-MGLP-TFEASDLEQGG--KSARVVNCVLALKSYG 160 (764)
Q Consensus 123 FL~ac~~-lGvp-~Fe~~DL~eg~--n~~kVv~cL~aL~~~~ 160 (764)
-+..+++ +|+| ..++.|+.++. +-.-|+.-|..|-.+.
T Consensus 70 af~~Ae~~lgip~lL~peD~v~~~~pD~ksvmtYvs~l~~~~ 111 (128)
T 2d87_A 70 AFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCL 111 (128)
T ss_dssp HHHHHHHHHCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcccCHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 8888865 8998 68999987654 3444555555554443
No 68
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=96.11 E-value=0.024 Score=59.06 Aligned_cols=102 Identities=20% Similarity=0.351 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFENV 120 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~ENI 120 (764)
|.|+..||.+.+.. ++ .- .+-|.+|++.|.|++.|.||.|+ ||.-.+. ..+.+..|.
T Consensus 17 R~elL~WiN~~L~~----~~--~k-----iEel~tGaayCQlmd~l~P~~i~l~kVkf~a~----------~e~e~i~N~ 75 (268)
T 2r8u_A 17 RHDMLAWINESLQL----NL--TK-----IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAK----------LEHEYIQNF 75 (268)
T ss_dssp HHHHHHHHHHHHTC----CC--CC-----GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCC----------SHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----Cc--ch-----HHHcccchHHHHHHHHHccCCCchhhccCCCC----------CHHHHHHHH
Confidence 46899999999863 22 11 34689999999999999999997 6654432 466777777
Q ss_pred HHHHHHHHhcCCC-CccCCccccCCChhHHHHHHHHHHhcccccccC
Q 004272 121 RNFLVAVQEMGLP-TFEASDLEQGGKSARVVNCVLALKSYGEWKQTG 166 (764)
Q Consensus 121 ~~FL~ac~~lGvp-~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g 166 (764)
.-+-.+-.++|++ .+.+.-|..|+ +..=+.=|..+++|......|
T Consensus 76 k~LQ~~F~k~~I~k~ipV~kLvkgk-~qDNlEFlqWfkkf~d~n~~~ 121 (268)
T 2r8u_A 76 KILQAGFKRMGVDKIIPVDKLVKGK-FQDNFEFVQWFKKFFDANYDG 121 (268)
T ss_dssp HHHHHHHHHTTCCCCCCHHHHTTTC-HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCccCHHHHhccC-chhHHHHHHHHHHHHHHcCCC
Confidence 7777777999999 58888888877 344566677788887776655
No 69
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=95.86 E-value=0.0088 Score=55.01 Aligned_cols=95 Identities=11% Similarity=0.201 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
+..+-.|+...+.... . ....+|-.+.+||.++|.|+++++|+.+.--. +..-...+|++.
T Consensus 10 ~~~LL~W~q~~~~~y~--~----v~v~nFs~sw~DG~af~aLih~~~P~lid~~~-------------l~~~~~~~n~~~ 70 (118)
T 1bhd_A 10 EKILLSWVRQTTRPYS--Q----VNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDK-------------VVKMSPIERLEH 70 (118)
T ss_dssp HHHHHHHHHHHHTTST--T----CCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHH-------------HHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhccCC--C----CCCCCCcccccCcHHHHHHHHHHCcCcCCHHH-------------hCcCCHHHHHHH
Confidence 3457789998874211 1 22357999999999999999999999885110 011223578877
Q ss_pred HHHHH-HhcCCC-CccCCccccCC-ChhHHHHHHHHH
Q 004272 123 FLVAV-QEMGLP-TFEASDLEQGG-KSARVVNCVLAL 156 (764)
Q Consensus 123 FL~ac-~~lGvp-~Fe~~DL~eg~-n~~kVv~cL~aL 156 (764)
=+..+ +++|+| ..++.|+..+. |-..|+.-|..|
T Consensus 71 af~~Ae~~lgi~~ll~~eDv~~~~pD~ksvmtYvs~l 107 (118)
T 1bhd_A 71 AFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSL 107 (118)
T ss_dssp HHHHHHHHHCCCCCSCHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHhhcCCCcHHHHHHHHHHH
Confidence 67766 499999 58888986543 333344444334
No 70
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=95.77 E-value=0.01 Score=61.24 Aligned_cols=91 Identities=18% Similarity=0.372 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
+..+..|....+. ..+ ..+|-.+++||.++|.|++.+.|+.++....- ..-...+|...
T Consensus 145 ~~~LL~W~~~~~~-----~~~----v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~~l------------~~~~~~~n~~~ 203 (245)
T 2wa7_A 145 KQRLLGWIQNKIP-----YLP----ITNFNQNWQDGKALGALVDSCAPGLCPDWESW------------DPQKPVDNARE 203 (245)
T ss_dssp HHHHHHHHHHHST-----TSC----CCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGS------------CTTCHHHHHHH
T ss_pred HHHHHHHHHHhCC-----CCC----CCCCcccchhhHHHHHHHHHHCcccccccccc------------CcccHHHHHHH
Confidence 4678889887642 122 34688899999999999999999988533221 12234679998
Q ss_pred HHHHHHh-cCCC-CccCCccccCCChhHHHHHHH
Q 004272 123 FLVAVQE-MGLP-TFEASDLEQGGKSARVVNCVL 154 (764)
Q Consensus 123 FL~ac~~-lGvp-~Fe~~DL~eg~n~~kVv~cL~ 154 (764)
-+..+++ +|+| ...+.|+.++.--.+.+-|.+
T Consensus 204 a~~~A~~~lGi~~~l~peDi~~~~~d~ksi~tyv 237 (245)
T 2wa7_A 204 AVQQADDWLGVPQVITPEEIIHPDVDEHSVMTYL 237 (245)
T ss_dssp HHHHHHHHSCCCCSSCHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCccCCHHHhccCCCcHHHHHHHH
Confidence 8888876 9999 588899988643344454444
No 71
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=95.76 E-value=0.0098 Score=54.95 Aligned_cols=96 Identities=13% Similarity=0.249 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+-.|....+..- +. ....+|-.+.+||..+|.|+++++|+.+.--.- ..-...+|++.
T Consensus 11 ~~~LL~W~q~~~~~y--~~----v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l-------------~~~~~~~n~~~ 71 (121)
T 2d88_A 11 SSKLLGWCQRQTDGY--AG----VNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSL-------------DEQNVEKNNQL 71 (121)
T ss_dssp SCHHHHHHHHHSTTS--SS----CCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTS-------------CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC--CC----CCCCCchhhccccHHHHHHHHHhCcCcCCHHHc-------------CccCHHHHHHH
Confidence 456788999887421 12 223568899999999999999999998742111 11234679988
Q ss_pred HHHHHH-hcCCC-CccCCccccC--CChhHHHHHHHHHH
Q 004272 123 FLVAVQ-EMGLP-TFEASDLEQG--GKSARVVNCVLALK 157 (764)
Q Consensus 123 FL~ac~-~lGvp-~Fe~~DL~eg--~n~~kVv~cL~aL~ 157 (764)
-+..++ ++|+| ..++.|+.++ -|-.-|+.-|..|-
T Consensus 72 af~~Ae~~lgi~~lL~peD~~~~~~pD~ksimtYvs~l~ 110 (121)
T 2d88_A 72 AFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFY 110 (121)
T ss_dssp HHHHHHHHTCCCCSSCHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHH
Confidence 888876 69999 6888999764 34444554444443
No 72
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=95.70 E-value=0.019 Score=59.62 Aligned_cols=96 Identities=14% Similarity=0.317 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+..|+...+.. .+.. ...+|-.+++||.++|.|++.+.|+.+.--.- ..-...+|...
T Consensus 142 ~~~LL~W~~~~~~~--y~~v----~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l-------------~~~~~~~n~~~ 202 (254)
T 1wku_A 142 KEGLLLWCQRKTAP--YRNV----NVQNFHTSWKDGLALCALIHRHRPDLIDYAKL-------------RKDDPIGNLNT 202 (254)
T ss_dssp HHHHHHHHHHHHTT--CTTC----CCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGC-------------CTTCHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCC----cCCCCccchhhHHHHHHHHHHHCCCccccccc-------------CcCCHHHHHHH
Confidence 34688899877631 1122 23568899999999999999999998852111 11234679999
Q ss_pred HHHHHHh-cCCC-CccCCccccCC--ChhHHHHHHHHHH
Q 004272 123 FLVAVQE-MGLP-TFEASDLEQGG--KSARVVNCVLALK 157 (764)
Q Consensus 123 FL~ac~~-lGvp-~Fe~~DL~eg~--n~~kVv~cL~aL~ 157 (764)
-+..+++ +|+| ...+.|+.++. |-.-|+.-+..|-
T Consensus 203 a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~ 241 (254)
T 1wku_A 203 AFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFY 241 (254)
T ss_dssp HHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHH
Confidence 8998865 9999 58899998765 3344554444443
No 73
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=95.49 E-value=0.053 Score=51.32 Aligned_cols=102 Identities=17% Similarity=0.258 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
=|.|+..||.+.+.. ++. - .+-|.+|++.|.|++.|. |.|+ ||.=.+ ...+.+..|
T Consensus 7 SR~eLL~WiN~~L~~----n~t--k-----IE~l~sGAaYCQlmD~lf-g~i~l~kVkf~a----------~~e~e~i~N 64 (145)
T 4abo_I 7 SRQELLAWINQVTSL----GLT--R-----IEDCGKGYAMIQIFDSIY-QDIPLKKVNFEC----------NNEYQYINN 64 (145)
T ss_dssp CHHHHHHHHHHHHTC----CCC--S-----GGGGGGSHHHHHHHHHHH-CCSCTTTSCSSC----------CSHHHHHHH
T ss_pred cHHHHHHHHHHHcCC----Ccc--h-----HHHccccHHHHHHHHHHh-cCcchhhcccCC----------CCHHHHHHH
Confidence 367899999999852 221 1 346899999999999999 8775 554333 146888889
Q ss_pred HHHHHHHHHhcCCC-CccCCccccCCChhHHHHHHHHHHhcccccccC
Q 004272 120 VRNFLVAVQEMGLP-TFEASDLEQGGKSARVVNCVLALKSYGEWKQTG 166 (764)
Q Consensus 120 I~~FL~ac~~lGvp-~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~g 166 (764)
.+-+-.+-.++|++ .+....|..|+ +..=+.=|..+++|......|
T Consensus 65 fKlLQ~~F~k~~I~k~ipV~kLvKgk-~QDNlEFlQWfkkf~d~n~~~ 111 (145)
T 4abo_I 65 WKVLQQVFLKKGIDKVVDPERLSRCK-MQDNLEFVQWAKRFWDQYYPG 111 (145)
T ss_dssp HHHHHHHHHHHTCCCCCCHHHHTTTC-HHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCCccCHHHHhccc-hHhHHHHHHHHHHHHHhcCCC
Confidence 98888888999999 58888888877 444567777888887766543
No 74
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=95.45 E-value=0.015 Score=59.83 Aligned_cols=95 Identities=15% Similarity=0.272 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+..|+...+.... . ....+|-.+++||.++|.|++.+.|+.++.-.- ..-...+|...
T Consensus 135 ~~~LL~W~~~~~~~~~--~----~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l-------------~~~~~~~n~~~ 195 (245)
T 1sh5_A 135 KEKLLLWSQRMVEGYQ--G----LRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKV-------------YRQTNLENLDQ 195 (245)
T ss_dssp HHHHHHHHHHHTTTST--T----CCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHH-------------HHSCHHHHHHH
T ss_pred HHHHHHHHHHHhccCC--C----cccCCccccccchHHHHHHHHHHCCCCCCHHHc-------------ccCCHHHHHHH
Confidence 3457889988775311 1 223468889999999999999999998862110 11124679999
Q ss_pred HHHHHHh-cCCC-CccCCccccCC-ChhHHHHHHHHH
Q 004272 123 FLVAVQE-MGLP-TFEASDLEQGG-KSARVVNCVLAL 156 (764)
Q Consensus 123 FL~ac~~-lGvp-~Fe~~DL~eg~-n~~kVv~cL~aL 156 (764)
.+..+++ +|+| ...+.|+..+. |-.-|+.-+..|
T Consensus 196 a~~~a~~~lGi~~~l~peDi~~~~pd~k~i~tyva~l 232 (245)
T 1sh5_A 196 AFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSL 232 (245)
T ss_dssp HHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccCCHHHhccCCCcHHHHHHHHHHH
Confidence 9999975 9999 58888987653 444444444434
No 75
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=95.43 E-value=0.025 Score=59.27 Aligned_cols=94 Identities=10% Similarity=0.192 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCc------eecCCCccccCCccccchhhH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPK------VVESPDTVLVPDGAALSAYQY 116 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~k------i~~~~~~~~~~~~~~~~~f~~ 116 (764)
++.+..|....+...... . ..+|-..++||.++|.|++.+.|+.++. +...+ +..-..
T Consensus 170 ~~~LL~W~n~~l~~~g~~-----~-I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~----------~~~~~~ 233 (275)
T 1aoa_A 170 EELLLRWANFHLENSGWQ-----K-INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSG----------FNETDD 233 (275)
T ss_dssp HHHHHHHHHHHHHHTTCC-----C-CSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTT----------TTCSSH
T ss_pred HHHHHHHHHHHHHhcCCC-----c-chhhhhhhhhhHHHHHHHHHHCCCccccccccccccccC----------CCccCH
Confidence 556889998876532211 1 4568889999999999999999997652 22121 122345
Q ss_pred HHHHHHHHHHHHhcCCC-CccCCccccCCChhHHHHHHH
Q 004272 117 FENVRNFLVAVQEMGLP-TFEASDLEQGGKSARVVNCVL 154 (764)
Q Consensus 117 ~ENI~~FL~ac~~lGvp-~Fe~~DL~eg~n~~kVv~cL~ 154 (764)
.+|...-+..++++|+| ...+.|+.++ |. +.+-+.+
T Consensus 234 ~~n~~~a~~~A~~lGi~~~l~peDi~~~-~~-k~i~tyv 270 (275)
T 1aoa_A 234 LKRAESMLQQADKLGCRQFVTPADVVSG-NP-KLNLAFV 270 (275)
T ss_dssp HHHHHHHHHHHTTTTCCCSCCHHHHHTT-CH-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCCHHHcCCC-Ch-hHHHHHH
Confidence 78999999999999999 5888999875 43 4444433
No 76
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=94.88 E-value=0.019 Score=59.24 Aligned_cols=97 Identities=10% Similarity=0.174 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
+..+..|+...+.... . ....+|-.+++||.++|.|++.+.|+.+.--...+ .-...+|...
T Consensus 137 ~~~LL~W~~~~~~~~~--~----~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~------------~~~~~~n~~~ 198 (246)
T 1dxx_A 137 EKILLSWVRQSTRNYP--Q----VNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVS------------QQSATQRLEH 198 (246)
T ss_dssp HHHHHHHHHHHHTTCT--T----CCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHT------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCC--C----CCcCCCcccchhHHHHHHHHHHHCcCccchhhhcc------------cCCHHHHHHH
Confidence 4578899998775321 1 22356889999999999999999999885211000 1123578988
Q ss_pred HHHHHH-hcCCC-CccCCccccCCCh-hHHHHHHHHHH
Q 004272 123 FLVAVQ-EMGLP-TFEASDLEQGGKS-ARVVNCVLALK 157 (764)
Q Consensus 123 FL~ac~-~lGvp-~Fe~~DL~eg~n~-~kVv~cL~aL~ 157 (764)
.+..++ ++|+| ...+.|+..+.-- .-|+.-+..|-
T Consensus 199 a~~~A~~~lGi~~~l~peDi~~~~pD~k~i~tyva~l~ 236 (246)
T 1dxx_A 199 AFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLF 236 (246)
T ss_dssp HHHHHHHTTCCCCCCCHHHHSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccCCHHHhhcCCCcHHHHHHHHHHHH
Confidence 888886 89999 5888998765422 33444444443
No 77
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=94.85 E-value=0.027 Score=59.09 Aligned_cols=81 Identities=19% Similarity=0.393 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+..|+..-+. .. ...+|-...+||..+|.|++++.|+.++....- ..-...+|...
T Consensus 172 k~~LL~W~n~~~~-----~~----~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~l------------~~~~~~~n~~~ 230 (272)
T 3hoc_A 172 KQRLLGWIQNKLP-----QL----PITNFSRDWQSGRALGALVDSCAPGLCPDWDSW------------DASKPVTNARE 230 (272)
T ss_dssp HHHHHHHHHHHCT-----TS----CCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGS------------CTTCHHHHHHH
T ss_pred HHHHHHHHHhhCC-----CC----CCCChhhcccchHHHHHHHHHhCcccccchhhc------------CccCHHHHHHH
Confidence 5567888886532 12 234688899999999999999999988533221 12235789999
Q ss_pred HHHHHHh-cCCC-CccCCccccCC
Q 004272 123 FLVAVQE-MGLP-TFEASDLEQGG 144 (764)
Q Consensus 123 FL~ac~~-lGvp-~Fe~~DL~eg~ 144 (764)
-+..+++ +|+| ..++.|+....
T Consensus 231 Af~~Ae~~lGi~~ll~peDiv~~~ 254 (272)
T 3hoc_A 231 AMQQADDWLGIPQVITPEEIVDPN 254 (272)
T ss_dssp HHHHHHHHHCCCCSSCHHHHTCTT
T ss_pred HHHHHHHhCCCCccCCHHHhccCC
Confidence 9998876 9999 58888998753
No 78
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.13 Score=47.84 Aligned_cols=101 Identities=16% Similarity=0.271 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCC--ceecCCCccccCCccccchhhHHHH
Q 004272 42 RRYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVP--KVVESPDTVLVPDGAALSAYQYFEN 119 (764)
Q Consensus 42 r~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~--ki~~~~~~~~~~~~~~~~~f~~~EN 119 (764)
=|.|+..||.+.+.. ++ .. .+.|.+|++.|.+++.+. |.|+ ||.-.+ ...+.+..|
T Consensus 11 sR~elL~WiN~~L~~----n~--~k-----iEel~tGaayCQl~d~l~-g~v~l~kVkf~a----------~~e~e~~~N 68 (127)
T 2qjx_A 11 SRTELLTWLNGLLNL----NY--KK-----IEECGTGAAYCQIMDSIY-GDLPMNRVKFNA----------TAEYEFQTN 68 (127)
T ss_dssp CHHHHHHHHHHHHTC----CC--CS-----GGGGGGSHHHHHHHHHHH-CCSCGGGSCTTC----------CSHHHHHHH
T ss_pred CHHHHHHHHHHHHcC----Cc--cH-----HHHccchHHHHHHHhhhc-cccCccccCCCC----------CCHHHHHHH
Confidence 467899999999863 22 11 345689999999999999 5565 444322 156888889
Q ss_pred HHHHHHHHHhcCCC-CccCCccccCCChhHHHHHHHHHHhccccccc
Q 004272 120 VRNFLVAVQEMGLP-TFEASDLEQGGKSARVVNCVLALKSYGEWKQT 165 (764)
Q Consensus 120 I~~FL~ac~~lGvp-~Fe~~DL~eg~n~~kVv~cL~aL~~~~~~k~~ 165 (764)
.+-+-.+-.++|++ .+....|..|+ +..=+.=|--+++|......
T Consensus 69 ~k~LQ~~f~k~~I~k~ipV~kLvKgr-fQDNlEFlQWfkkf~d~n~~ 114 (127)
T 2qjx_A 69 YKILQSCFSRHGIEKTVYVDKLIRCK-FQDNLEFLQWLKKHWIRHKD 114 (127)
T ss_dssp HHHHHHHHHHTTCCCCCCHHHHTTTC-HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCccCHHHHhccC-chhHHHHHHHHHHHHHhcCC
Confidence 99999999999999 58888888887 34456667778877776554
No 79
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=94.55 E-value=0.047 Score=59.23 Aligned_cols=93 Identities=17% Similarity=0.341 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+..|+...+. ..+ ..+|-.+.+||.++|.|++++.|+.++....- ..-...+|.+.
T Consensus 142 k~~LL~W~~~~~~-----~~~----v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~l------------~~~~~~~n~~~ 200 (347)
T 4b7l_A 142 KQRLLGWIQNKIP-----YLP----ITNFNQNWQDGKALGALVDSCAPGLCPDWESW------------DPQKPVDNARE 200 (347)
T ss_dssp HHHHHHHHHHHCT-----TSC----CCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGS------------CTTCHHHHHHH
T ss_pred HHHHHHHHHhhCC-----Ccc----cCCCCCCccchHHHHHHHHHhCCccccchhhc------------CcCCHHHHHHH
Confidence 4568889887642 122 34688899999999999999999988643221 12234678888
Q ss_pred HHHHHH-hcCCC-CccCCccccCCChhHHHHHHHHH
Q 004272 123 FLVAVQ-EMGLP-TFEASDLEQGGKSARVVNCVLAL 156 (764)
Q Consensus 123 FL~ac~-~lGvp-~Fe~~DL~eg~n~~kVv~cL~aL 156 (764)
-+..++ .+|+| ..++.|+..+.=-.+.+-|-++-
T Consensus 201 Af~~Ae~~lGip~ll~peDi~~~~pDeksimtYvs~ 236 (347)
T 4b7l_A 201 AMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQ 236 (347)
T ss_dssp HHHHHHHHHCCCCSSCHHHHTCTTCCHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcccCHHHcCCCCCChhHHHHHHHH
Confidence 777665 59999 68899998765223455554443
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.89 E-value=0.0081 Score=57.91 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=39.0
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.++||.....+..|.++++.+..++.++-....-.++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 467888766666788898888888877544444567789999999999873
No 81
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=93.29 E-value=0.074 Score=56.44 Aligned_cols=94 Identities=15% Similarity=0.283 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
++.+..|....+.. .... ...+|-.+.+||.++|.|++++.|+.|.--.-.+ -...+|++.
T Consensus 191 k~~LL~W~n~~~~~--y~~v----~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~-------------~~~~~N~~~ 251 (296)
T 3f7p_A 191 KEKLLLWSQRMVEG--YQGL----RCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYR-------------QTNLENLDQ 251 (296)
T ss_dssp HHHHHHHHHHHTTT--STTC----CCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTT-------------SCHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCC----cCCCccccccccHHHHHHHHHHCcCccCHHHcCc-------------ccHHHHHHH
Confidence 34578898877642 1122 2346888999999999999999999885211111 124679999
Q ss_pred HHHHH-HhcCCC-CccCCccccC-CChhHHHHHHHH
Q 004272 123 FLVAV-QEMGLP-TFEASDLEQG-GKSARVVNCVLA 155 (764)
Q Consensus 123 FL~ac-~~lGvp-~Fe~~DL~eg-~n~~kVv~cL~a 155 (764)
-+..+ +++|+| ...+.|+... -|-..|+.-|..
T Consensus 252 Af~~Ae~~LGi~~ll~pEDi~~~~pDeksimtyvs~ 287 (296)
T 3f7p_A 252 AFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSS 287 (296)
T ss_dssp HHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccCCHHHhcCCCCcHHHHHHHHHH
Confidence 99988 689999 5788898654 233334433333
No 82
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.56 E-value=0.027 Score=55.09 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=36.7
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCC-eEEEeeccCCCCCceEec
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYN-VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N-~~IfaYGqTGSGKTyTm~ 487 (764)
.++||.....+..+..+++.+..++...-.++. ..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 467887666555677788777666665443332 678889999999999873
No 83
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.98 E-value=0.073 Score=56.47 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=35.1
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
++||........+..++..+..+++..-.+....|+-||++|+||||.+..
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 567765544445666777666666665444456788899999999999843
No 84
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.94 E-value=1.7 Score=48.50 Aligned_cols=79 Identities=23% Similarity=0.410 Sum_probs=50.8
Q ss_pred EEEcceecCCCCChHhHHhhh-HHHHH-HHHC--C--CCeEEEeeccCCCCCceEe--------------cCCCCCCccc
Q 004272 437 SFSFNKVYGPSATQAEVFSDM-QPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTM--------------TGPRELTEKS 496 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v-~plV~-svl~--G--~N~~IfaYGqTGSGKTyTm--------------~G~~~~~~~~ 496 (764)
.-+||.|-+.+..-+++.+.| .|+.. ..+. | ..-.|+-||++|+|||++. .|+. .....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~-l~~~~ 255 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ-LVQMY 255 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG-GCSSC
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh-hhhcc
Confidence 457888877765555555553 55542 3332 3 2456888999999999654 2221 12334
Q ss_pred ccchHHHHHHHHHHHhhhcc
Q 004272 497 QGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 497 ~GIi~ral~~LF~~~~~~~~ 516 (764)
.|--.+.++.+|........
T Consensus 256 vGese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCS
T ss_pred cchHHHHHHHHHHHHHhcCC
Confidence 57788999999998876654
No 85
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.54 E-value=3 Score=46.34 Aligned_cols=79 Identities=24% Similarity=0.473 Sum_probs=48.3
Q ss_pred EEEcceecCCCCChHhHHhhh-HHHHH-HHHC--CC--CeEEEeeccCCCCCceEe--------------cCCCCCCccc
Q 004272 437 SFSFNKVYGPSATQAEVFSDM-QPLIR-SVLD--GY--NVCIFAYGQTGSGKTYTM--------------TGPRELTEKS 496 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v-~plV~-svl~--G~--N~~IfaYGqTGSGKTyTm--------------~G~~~~~~~~ 496 (764)
.-+||.|-+-+.--+++.+.+ .|+.. ..+. |. .-.|+-||++|+|||++. .|+. .....
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~-l~~~~ 246 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE-FVHKY 246 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG-TCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch-hhccc
Confidence 356777776654444444443 33332 2232 32 345899999999999654 2321 12334
Q ss_pred ccchHHHHHHHHHHHhhhcc
Q 004272 497 QGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 497 ~GIi~ral~~LF~~~~~~~~ 516 (764)
.|--.+.++++|........
T Consensus 247 ~Ge~e~~ir~lF~~A~~~aP 266 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLARENAP 266 (428)
T ss_dssp CSHHHHHHHHHHHHHHHTCS
T ss_pred cchhHHHHHHHHHHHHHcCC
Confidence 57888999999998876554
No 86
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=89.18 E-value=0.21 Score=60.11 Aligned_cols=95 Identities=12% Similarity=0.291 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHHH
Q 004272 44 YEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRNF 123 (764)
Q Consensus 44 ~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~F 123 (764)
..+..|+...+.. .+.. ...+|-.+++||.++|.|++.+.|+.|+.-.-.+ -...+|...-
T Consensus 124 ~~ll~W~~~~~~~--~~~~----~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~-------------~~~~~n~~~a 184 (863)
T 1sjj_A 124 EGLLLWYQRKTAP--YKNV----NIQNFHISWKDGLGFCALIHRHRPELIDYGKLRK-------------DDPLTNLNTA 184 (863)
T ss_dssp TTTHHHHHHHHTT--STTC----CCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGS-------------CCCGGGCTHH
T ss_pred HHHHHHHHHhccC--CCCC----CCCCCccccccHHHHHHHHHHhCCCCcChhhCCC-------------CCHHHHHHHH
Confidence 4578899876631 1122 2346889999999999999999999885211111 1134688888
Q ss_pred HHHHHh-cCCC-CccCCccccCC--ChhHHHHHHHHHH
Q 004272 124 LVAVQE-MGLP-TFEASDLEQGG--KSARVVNCVLALK 157 (764)
Q Consensus 124 L~ac~~-lGvp-~Fe~~DL~eg~--n~~kVv~cL~aL~ 157 (764)
+..+++ +|+| ...+.|+.++. |-.-|+.-|..|-
T Consensus 185 ~~~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~ 222 (863)
T 1sjj_A 185 FDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFY 222 (863)
T ss_dssp HHHHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHH
Confidence 888865 9999 58888988764 3344555554444
No 87
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=88.81 E-value=2 Score=44.83 Aligned_cols=261 Identities=13% Similarity=0.174 Sum_probs=124.4
Q ss_pred hhhhhhccCCCEEEEEEeCCCCCCCCCCCcceeeecCCeEEEeCCCCCCCCceEEEcceecCCC--CChHhHHhhhHHHH
Q 004272 384 LYNQVQDLKGSIRVYCRVRPFLSGQSNYLSTVDHIEEGNITINTPSKHGKGWKSFSFNKVYGPS--ATQAEVFSDMQPLI 461 (764)
Q Consensus 384 l~n~~~~lkg~IrV~~RVRP~~~~e~~~~~~i~~~~~~~i~i~~p~~~g~~~~~F~FD~VF~~~--atQ~eVf~~v~plV 461 (764)
|-|.+.|+||.||.|+=+-+-.-. ...-....+++|+ .+...+.|.|++|.+.. ..++-+|++.++..
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l~----~~~~IdY~~~tI~------~~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~ 73 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEIS----EKLIVNYSDESIE------DMKNHKTYKFTKLIQNFSHQNKDLFKEDLHVYI 73 (275)
T ss_dssp ------------CEEEEEETTTSC----TTEEEETTTTEEE------ETTTTEEEECSEEEEECSSSCCCGGGTHHHHHH
T ss_pred ccccHHHhcCcEEEEEEEccccCC----ccEEEecccceec------cCCCccEEEEEeeeccccCCHHHHHHHHHHHHH
Confidence 568899999999999998553211 1233344566664 12345889999999653 33444556799999
Q ss_pred HHHH-CCCCeEEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHHHHhhhccceEEEEEEEEEEEeCCe-eeeccC
Q 004272 462 RSVL-DGYNVCIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFLIAEQRKDIFRYDVAVQMLEIYNEQ-VRDLLV 539 (764)
Q Consensus 462 ~svl-~G~N~~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~~~~~~~~~~~~~V~vS~~EIYnE~-V~DLL~ 539 (764)
+.++ .+.|+.||+.++.- -+-+-...+..+... . ...|.+.++++=+-.+. -.|||.
T Consensus 74 DmCL~k~~NfnlISiS~~~----------------~~~lr~~ll~f~~~~---y--~~~y~itlQ~V~Ls~~~~S~Dll~ 132 (275)
T 4gkp_A 74 DFCLKRRENFNLFSVGSSN----------------IPNTFEKLLAFFKNN---Y--FDKFVITLQYVMLSDNADSQDLLS 132 (275)
T ss_dssp HHHHHTTCCEEEEEECCSS----------------CCSHHHHHHHHHHHH---T--TTTEEEEEEEEEEC----CEETTC
T ss_pred HHHhccCCCceEEEecCCC----------------cHHHHHHHHHHHHHh---c--cccceEEEEEEEecCCCccccccc
Confidence 9888 69999999987532 112333333333322 2 23688899988887555 458886
Q ss_pred CCCCCC---ceeEeecCCCCccCCCCeEEecCCHHHHHHHHHhhhhccccccccCCCCCCCCcceEEEEEEeeecCCCce
Q 004272 540 TDGSNR---RLEIRNSSQTGLNVPDASLIPVSSTADVINLMNLGQKNRAVGATALNDRSSRSHSCLTVHVQGKDLTSGTM 616 (764)
Q Consensus 540 ~~~~~~---~l~ir~~~~~g~~v~~lt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~ifti~v~~~~~~~~~~ 616 (764)
.+.... .++++-+.+ .+.+ +-+.+.+.+..+...+ .-..-+......-.|+++++..++...+.
T Consensus 133 ~~~~~~~d~eI~Lk~e~~-sI~l-dS~~i~i~~~~~~~~~----------~~~~~~~~~~~Gi~IlKfq~~~~~~~e~~- 199 (275)
T 4gkp_A 133 NNKDGGKDVEIKLKIEES-TISL-GSTLITLDEITDKLQI----------KKKYSQLNHQNGIGLSKFQFFCLQDIEPI- 199 (275)
T ss_dssp C----------CEEECSS-CEEE-CSCCEEGGGCCSCC------------CCSCC-----CCEEEEEEEEEETTCSSCC-
T ss_pred CCccccCCcceeEEeecc-eeee-cceEEEeccCccccch----------hhhccCCCCCCCceEEEEEEEeccCCCCC-
Confidence 543211 122322111 0111 1122223221111110 00000111122233666666543321111
Q ss_pred EEEEEEEEecCCCcCccccCCchhhHHHHHHhhHhHHHHHHHHHHHhccCCCCCCCCChhhHHhhhccCCCccEEEEEee
Q 004272 617 YRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFVHI 696 (764)
Q Consensus 617 ~~s~L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSLsaLg~VI~aLa~k~~hiPYR~SKLT~LLqdsLgGnskt~mI~~I 696 (764)
--..+||.+-+..- ..+|.+++. +.. +-.|+++-+|+.-| ...|-+++.++
T Consensus 200 -pidfYFiei~~~~t--------------------~~~L~~~~s----~~~---~~~spi~~iLk~LL-~~TKS~flfni 250 (275)
T 4gkp_A 200 -PIDFYFIEIYQPSI--------------------YPILKRSTG----TES---NLNSPLEIVLKKIF-HDTKSAFVFQI 250 (275)
T ss_dssp -CEEEEEEEECCGGG--------------------HHHHHHC---------------CHHHHHHHHHH-HHSBCCEEEEE
T ss_pred -ceeEEEEEecCHHH--------------------HHHHHhccC----CCC---CCCCcHHHHHHHHH-hcCcceEEEEc
Confidence 12577888776432 223333221 111 12288888887655 46677899999
Q ss_pred CCCCCCHHHHHHHHHHHHHhccccc
Q 004272 697 SPEPDAVGETISTLKFAERVATVEL 721 (764)
Q Consensus 697 SP~~~~~~ETlsTL~FA~r~~~v~~ 721 (764)
.-.. +.-..|..+.++.++++
T Consensus 251 ~~~~----n~~~lL~ls~~l~~~~~ 271 (275)
T 4gkp_A 251 DHSA----EVYDILKLSSHLSFIRN 271 (275)
T ss_dssp SSCT----THHHHHHHHHHHTTCCC
T ss_pred cCcc----hHHHHHHHHHHhccccC
Confidence 6542 23367889999998875
No 88
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.39 E-value=1 Score=50.15 Aligned_cols=79 Identities=22% Similarity=0.421 Sum_probs=48.3
Q ss_pred EEEcceecCCCCChHhHHhhh-HHHHH-HHHC--CC--CeEEEeeccCCCCCceEe--------------cCCCCCCccc
Q 004272 437 SFSFNKVYGPSATQAEVFSDM-QPLIR-SVLD--GY--NVCIFAYGQTGSGKTYTM--------------TGPRELTEKS 496 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v-~plV~-svl~--G~--N~~IfaYGqTGSGKTyTm--------------~G~~~~~~~~ 496 (764)
..+||.|-+-+..-+++-+.| -|+-. ..+. |. .-.|+-||++|+|||++. .|+ ......
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s-~l~sk~ 255 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS-GIVDKY 255 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG-GTCCSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh-hhcccc
Confidence 356777776554444444443 34432 2332 32 356899999999999754 222 112334
Q ss_pred ccchHHHHHHHHHHHhhhcc
Q 004272 497 QGVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 497 ~GIi~ral~~LF~~~~~~~~ 516 (764)
.|--.+.++.+|........
T Consensus 256 ~Gese~~ir~~F~~A~~~~P 275 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEP 275 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCS
T ss_pred chHHHHHHHHHHHHHHhcCC
Confidence 57778899999998876554
No 89
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.28 E-value=0.58 Score=51.72 Aligned_cols=78 Identities=24% Similarity=0.449 Sum_probs=49.5
Q ss_pred EEcceecCCCCChHhHHhhh-HHHHH-HHHC--CC--CeEEEeeccCCCCCceEe--------------cCCCCCCcccc
Q 004272 438 FSFNKVYGPSATQAEVFSDM-QPLIR-SVLD--GY--NVCIFAYGQTGSGKTYTM--------------TGPRELTEKSQ 497 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v-~plV~-svl~--G~--N~~IfaYGqTGSGKTyTm--------------~G~~~~~~~~~ 497 (764)
-+||.|-+-+.--+++-+.| -|+.. ..+. |. .-.|+-||++|+|||.+. .|+. ......
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~-l~sk~v 223 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE-LVQKYI 223 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG-GSCSST
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH-hhcccc
Confidence 56777777655555555544 45442 3333 22 345899999999999754 2221 122345
Q ss_pred cchHHHHHHHHHHHhhhcc
Q 004272 498 GVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 498 GIi~ral~~LF~~~~~~~~ 516 (764)
|--.+.++++|........
T Consensus 224 Gese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHAP 242 (405)
T ss_dssp THHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHhCC
Confidence 7788999999998876654
No 90
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.26 E-value=0.32 Score=47.86 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=28.3
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
++||.++.. ..+..++..+..++. .+....++-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 456665552 233455554443332 335667889999999999887
No 91
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.88 E-value=0.3 Score=49.74 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=22.5
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.|+||.+.+.+ .....+...+..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~----~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEA----NSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCC----HHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCC----HHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 37888887643 333333333343333 3456788999999999876
No 92
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.54 E-value=2.3 Score=39.40 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCChHHHHHHccchhHHHHHHHhhcCCCCCceecCCCccccCCccccchhhHHHHHHH
Q 004272 43 RYEAAGWLRKMVGVVAARDLPAEPSEEEFRLGLRSGIILCNVINKVQPGAVPKVVESPDTVLVPDGAALSAYQYFENVRN 122 (764)
Q Consensus 43 ~~e~~~Wl~~~lg~~~~~~l~~~~~~e~f~~~LrdGvvLC~L~N~l~Pg~v~ki~~~~~~~~~~~~~~~~~f~~~ENI~~ 122 (764)
..++..||..+ +...+.-++..-+.||+++..++.+..|..|.--+-.+.+ +.-.-+.|=..
T Consensus 17 ~~el~~WL~~l---------~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~---------S~~~K~~NW~~ 78 (127)
T 2ee7_A 17 LHQLYLWVDNI---------PLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPAN---------SLQQKLSNWGH 78 (127)
T ss_dssp HHHHHHHHHHS---------CCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCS---------SHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCC---------cHHHHHHhHHH
Confidence 45777898832 3334445688899999999999999999988744433321 45566789999
Q ss_pred HH-HHHHhcCCCC--ccCCccccC--CChhHHHHHH
Q 004272 123 FL-VAVQEMGLPT--FEASDLEQG--GKSARVVNCV 153 (764)
Q Consensus 123 FL-~ac~~lGvp~--Fe~~DL~eg--~n~~kVv~cL 153 (764)
|- +..+.+|++. =...++..+ +-+.+|+.+|
T Consensus 79 ln~kvl~kl~~~l~~~~i~~i~~~~~Gaie~lL~~L 114 (127)
T 2ee7_A 79 LNRKVLKRLNFSVPDDVMRKIAQCAPGVVELVLIPL 114 (127)
T ss_dssp HHHHTTGGGTCCCCHHHHHHHHTTCTTTTHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhCCCCHHHHHHHHH
Confidence 95 6779999863 222233322 4444566666
No 93
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.49 E-value=0.46 Score=44.50 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=22.9
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+..++..+..+....++-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 344555555566677899999999999887
No 94
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.12 E-value=0.52 Score=49.53 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=30.2
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.|+||..... ..+...+..+..++..-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 4788876532 234445554444444311 123467889999999999874
No 95
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.68 E-value=0.53 Score=50.30 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=23.1
Q ss_pred hHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 457 MQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 457 v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
+...+..++ .|...+|+-||++|+|||.++
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444444444 678889999999999999887
No 96
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.52 E-value=0.53 Score=44.11 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=22.8
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+..+++.+..+....++-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 344555555566778899999999999877
No 97
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.15 E-value=0.83 Score=46.67 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=18.4
Q ss_pred CCCCeEEEeeccCCCCCceEe
Q 004272 466 DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm 486 (764)
......++-||++|+|||++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566788999999999999876
No 98
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.87 E-value=1.2 Score=46.09 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.0
Q ss_pred CCCCeEEEeeccCCCCCceEe
Q 004272 466 DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm 486 (764)
......|+-||++|+|||++.
T Consensus 64 ~~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344557899999999999876
No 99
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.05 E-value=0.62 Score=47.30 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=32.1
Q ss_pred EEEcceecCCCCChHhHHhhhHHHH-----HHHHCCCCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLI-----RSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV-----~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+.|+.+.+.+.....+.+.+..+- ..+-......|+-||++|+|||+..
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4678888888777666655433211 1111122345889999999999987
No 100
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.92 E-value=1.2 Score=47.17 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=34.9
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCCe--EEEeeccCCCCCceEec
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNV--CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~--~IfaYGqTGSGKTyTm~ 487 (764)
.+.||.+.+ |+.+...+..+++.+-.|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 456777665 456666666677777777764 88999999999998873
No 101
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.80 E-value=13 Score=41.30 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=46.8
Q ss_pred EEcceecCCCCChHhHHhhh-HHHHH-HHHC--C--CCeEEEeeccCCCCCceEe--------------cCCCCCCcccc
Q 004272 438 FSFNKVYGPSATQAEVFSDM-QPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTM--------------TGPRELTEKSQ 497 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v-~plV~-svl~--G--~N~~IfaYGqTGSGKTyTm--------------~G~~~~~~~~~ 497 (764)
-+||.|=+-+.--+++.+.| .|+.. ..+. | ..--|+-||++|+|||.+. .|+. ......
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~-l~sk~v 257 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE-LIQKYL 257 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG-GCCSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH-hhhccC
Confidence 45666655444333444433 33321 2222 3 3456999999999999643 3322 123446
Q ss_pred cchHHHHHHHHHHHhhhcc
Q 004272 498 GVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 498 GIi~ral~~LF~~~~~~~~ 516 (764)
|--.+.++.+|........
T Consensus 258 Gesek~ir~lF~~Ar~~aP 276 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENAP 276 (437)
T ss_dssp SHHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHhcCC
Confidence 8888999999998876654
No 102
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=74.73 E-value=0.58 Score=44.03 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=14.3
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
.++-||++|+|||+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp EEEEESSSTTTTCHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45669999999999883
No 103
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.54 E-value=1.1 Score=43.93 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=20.2
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..++.|.| ++..++||||||.+
T Consensus 43 ~~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 43 RAIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 45667788987 56788999999987
No 104
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=73.85 E-value=1.4 Score=42.53 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+++|.|+ +..++||||||.+.
T Consensus 32 ~~i~~~~~~~~~--lv~apTGsGKT~~~ 57 (206)
T 1vec_A 32 ESIPIALSGRDI--LARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHHTTCCE--EEECCSSSTTHHHH
T ss_pred HHHHHHccCCCE--EEECCCCCchHHHH
Confidence 355667788774 56789999999654
No 105
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=73.72 E-value=1.6 Score=40.23 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=23.2
Q ss_pred hHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 452 EVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 452 eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.....+...+..+... +..|+-||++|+|||+....
T Consensus 11 ~~~~~l~~~~~~~~~~-~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 11 AAIQEMNREVEAAAKR-TSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp HHHHHHHHHHHHHHTC-SSCEEEEEETTCCHHHHHGG
T ss_pred HHHHHHHHHHHHHhCC-CCcEEEECCCCccHHHHHHH
Confidence 3444455555555433 34467799999999987644
No 106
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.43 E-value=1.3 Score=42.80 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=19.2
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..+++|.+ ++..++||||||.+
T Consensus 30 ~~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 30 AALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHHcCCCC--EEEECCCCChHHHH
Confidence 34566778887 45668999999987
No 107
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=73.34 E-value=1.1 Score=49.86 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=29.7
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..|+||...... ++...+..+..+... .|..-.++-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~g~-~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGP-GNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCT-TTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCC-chHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 357888755322 333344444444333 2313467889999999999884
No 108
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.98 E-value=2.3 Score=42.51 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=28.1
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHC---------CCCeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLD---------GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~---------G~N~~IfaYGqTGSGKTyTm 486 (764)
.|+.+.+. +++-+.+..++..+.. .....|+-||++|+|||+..
T Consensus 4 ~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 4 SFKDVAGM----HEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CTTSSCSC----HHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhCCH----HHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 45666554 4444455555544322 34456899999999999876
No 109
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=72.89 E-value=1.6 Score=48.50 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=34.0
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHCCCC--eEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYN--VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N--~~IfaYGqTGSGKTyTm 486 (764)
.+.||.+.+ |+++.+.+..+++.+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 355666664 56777777777777777764 36778999999999765
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=72.73 E-value=0.62 Score=49.37 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=27.0
Q ss_pred CChHhHHhhhHHHHHHHHC-CCCeEEEeeccCCCCCceEe
Q 004272 448 ATQAEVFSDMQPLIRSVLD-GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 448 atQ~eVf~~v~plV~svl~-G~N~~IfaYGqTGSGKTyTm 486 (764)
..+++..+.+...+..++. +...+++-||++|+|||+++
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3455555655555555543 44567899999999999887
No 111
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=71.29 E-value=1.3 Score=46.17 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=19.8
Q ss_pred HHHHHHHHC--CC--CeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLD--GY--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~--G~--N~~IfaYGqTGSGKTyTm 486 (764)
..++...+. |. ...|+-||++|+|||+..
T Consensus 21 ~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 21 VHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 455555443 22 246788999999999876
No 112
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.26 E-value=1.2 Score=46.75 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=29.0
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|+|+.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 457888887643 33222 333344444455899999999999876
No 113
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.23 E-value=1.1 Score=47.45 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=28.2
Q ss_pred ChHhHHhhhHHHHHHHHCCCC-e--EEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGYN-V--CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~N-~--~IfaYGqTGSGKTyTm 486 (764)
.+++..+.+...+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 456666666666777666543 4 7889999999999887
No 114
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=71.19 E-value=1.2 Score=42.52 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=21.9
Q ss_pred hHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
++++.+.+...+. .+....++-||++|+|||+++
T Consensus 22 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHH---TTCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 3444444433333 344334899999999999876
No 115
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=71.08 E-value=0.96 Score=45.62 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=28.0
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHH-----HHCCC----CeEEEeeccCCCCCceEe
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRS-----VLDGY----NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~s-----vl~G~----N~~IfaYGqTGSGKTyTm 486 (764)
..++||.+.+.+. +...+..++.. ++.+. ...++-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~----~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEE----AKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHH----HHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHH----HHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3477888876543 33333333322 22211 223899999999999887
No 116
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.89 E-value=1.5 Score=43.68 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=20.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+++|.+ ++..++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45667788988 577789999999863
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=70.48 E-value=1.4 Score=45.11 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=29.3
Q ss_pred EEEcceecCCCCChHhHHhhh-HHH-----HHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDM-QPL-----IRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v-~pl-----V~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+.|+.+.+.+..-+.+.+.+ .++ ....--.....|+-||++|+|||+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 477888877544433443332 111 11110134556889999999999876
No 118
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.34 E-value=1 Score=47.04 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=27.9
Q ss_pred EEcceecCCCCChHhHHhhh-HHHHH-HHH----CCCCeEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDM-QPLIR-SVL----DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v-~plV~-svl----~G~N~~IfaYGqTGSGKTyTm 486 (764)
++||.|.+.+..-..+.+.+ .|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 56777776543333333332 22110 111 123456889999999999876
No 119
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.90 E-value=2 Score=43.33 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=29.5
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHC---------CCCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLD---------GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~---------G~N~~IfaYGqTGSGKTyTm 486 (764)
.+.|+.+.+. +.+.+.+..++..+.. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGC----DEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSC----HHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCc----HHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4567777765 4455555444444321 12446899999999999876
No 120
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=69.69 E-value=1 Score=45.01 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=20.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45667788988 567899999999773
No 121
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.69 E-value=1.7 Score=48.13 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+++..++......|.-.|+||||||+||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3455556666678899999999999998
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.59 E-value=2 Score=45.63 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=28.6
Q ss_pred ChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
.+++..+.+...+..++.|. ..+++-||++|+|||+++
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 45666666666777766554 458999999999999876
No 123
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.47 E-value=1.5 Score=46.52 Aligned_cols=41 Identities=34% Similarity=0.694 Sum_probs=26.2
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.|+.+++ |+.+.+.+...|. .|.-..++-||++|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHH
Confidence 4556654 4555555444333 454333777999999999987
No 124
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=68.36 E-value=1.9 Score=42.76 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.++ +..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~--li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 54 QTIGLALQGKDV--LGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEeCCCCcHHHHH
Confidence 345667789885 56679999999863
No 125
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=67.04 E-value=2.7 Score=44.03 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=30.9
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHH--CCCCeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVL--DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl--~G~N~~IfaYGqTGSGKTyTm 486 (764)
+|+.+. .++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~ii----G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYI----GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCC----SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhC----ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 455554 45666676766776665 344556899999999999876
No 126
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.66 E-value=1.8 Score=46.93 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=20.4
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+.+++.-....|.-.|+||||||+||
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 344445455558888999999999998
No 127
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=66.37 E-value=2.2 Score=41.70 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+++|.+ ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 45667778888 456679999999864
No 128
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=65.42 E-value=4.8 Score=41.90 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=27.8
Q ss_pred ChHhHHhhhHHHHHHHHCCC-----CeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGY-----NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~-----N~~IfaYGqTGSGKTyTm 486 (764)
|-+++...+..++..++.|+ ...|+..|++|||||+..
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 33555555677777777664 457889999999999864
No 129
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=65.21 E-value=2.3 Score=42.65 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+++|.|+ +..++||||||.+.
T Consensus 52 ~~i~~i~~~~~~--l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 52 NAIPAILEHRDI--MACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 455677889885 55679999999763
No 130
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=64.93 E-value=3 Score=41.04 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=20.4
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+++|.|+ +..++||||||.+.
T Consensus 49 ~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 49 QAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456777889886 56789999999764
No 131
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=64.54 E-value=2.9 Score=40.33 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred hHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
++.+.+.+...+. .|. ...++-||++|+|||+++
T Consensus 28 ~~~~~~~l~~~l~---~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 28 QEHVLTALANGLS---LGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CHHHHHHHHHHHH---HTCCCSEEEEECSTTSCHHHHH
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 3444444433333 233 347889999999999876
No 132
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=64.28 E-value=2.3 Score=47.32 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=27.6
Q ss_pred CChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 448 ATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 448 atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|+.+......+...+-.|.-..++-||++|+|||++.
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 356777754444444455566678999999999999876
No 133
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=63.74 E-value=3.3 Score=42.68 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=24.0
Q ss_pred ChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.|+++.+.+..++.. |....++-||++|+|||++.
T Consensus 29 g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 29 GQEHIVKRLKHYVKT---GSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp SCHHHHHHHHHHHHH---TCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHc---CCCCeEEEECcCCCCHHHHH
Confidence 356666655544443 54444888999999999886
No 134
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=63.66 E-value=3 Score=38.36 Aligned_cols=31 Identities=13% Similarity=0.461 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 455 SDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 455 ~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+...+..+ ...+..|+-||++|+|||+..
T Consensus 11 ~~~~~~~~~~-a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 11 NQYRRRLQQL-SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp HHHHHHHHHH-TTCCSCEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCCCHHHHH
Confidence 3333333333 244556788999999998765
No 135
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=63.45 E-value=1.4 Score=42.55 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=19.1
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..+++|.+ ++..++||||||.+..
T Consensus 41 ~i~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 41 VAQPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 3455667776 4568999999998763
No 136
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=63.41 E-value=4.1 Score=42.13 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=28.8
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHH--CCCCeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVL--DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl--~G~N~~IfaYGqTGSGKTyTm 486 (764)
+|+.+.+ ++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIG----QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCS----CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhC----HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 4555554 4555555655555544 234466788999999999876
No 137
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=63.15 E-value=3.7 Score=42.73 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.1
Q ss_pred HHHHHHHHCCC---CeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGY---NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~---N~~IfaYGqTGSGKTyTm 486 (764)
...+..+++|. .-||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 45678888887 458999999999999876
No 138
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=62.68 E-value=2.8 Score=41.53 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=19.2
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..+++|.|+ +..++||||||.+
T Consensus 53 ~~i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 53 KAIPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCCcHHHH
Confidence 355667889885 5567999999987
No 139
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=62.67 E-value=2.5 Score=42.24 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=18.6
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+..+++|.|+. ..++||||||.+.
T Consensus 59 ~i~~~~~g~~~l--~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDMV--GVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCEE--EEECTTSCHHHHH
T ss_pred HHHHHhCCCCEE--EECCCcCHHHHHH
Confidence 455567888764 5569999999873
No 140
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=62.65 E-value=2.2 Score=42.57 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..++..+..|.+ ++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 345566667765 467899999999754
No 141
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.49 E-value=3 Score=44.51 Aligned_cols=27 Identities=41% Similarity=0.673 Sum_probs=21.7
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
...+..++.|.+ ++..++||||||.+.
T Consensus 68 ~~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 68 QRAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 346677889988 567899999999873
No 142
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=62.47 E-value=2.8 Score=42.30 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=19.6
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.++ +..++||||||.+.
T Consensus 72 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 72 EAIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 356677889875 45569999999864
No 143
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=62.34 E-value=3.4 Score=42.54 Aligned_cols=38 Identities=29% Similarity=0.304 Sum_probs=26.7
Q ss_pred ChHhHHhhhHHHHHHHHCCC------CeEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~------N~~IfaYGqTGSGKTyTm 486 (764)
.|..+.+.+...+.....|. ...++-+|++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 45666666655565554332 357899999999999876
No 144
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=61.97 E-value=2.4 Score=43.21 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=19.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..++.|.| ++..++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 45666778877 56789999999976
No 145
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=60.01 E-value=2.8 Score=43.85 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=20.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|..--+++.++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3566777873344678899999999763
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=59.72 E-value=1.5 Score=46.21 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=23.7
Q ss_pred hHhHHhhhHHHHHHHHC-CCCeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLD-GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~-G~N~~IfaYGqTGSGKTyTm 486 (764)
+++..+.+...+..++. +...+++-||++|+|||+.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 34444444444444333 34557889999999999887
No 147
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.72 E-value=3 Score=44.63 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=24.3
Q ss_pred HhhhHHHH-HHHHCC---CCeEEEe--eccCCCCCceEe
Q 004272 454 FSDMQPLI-RSVLDG---YNVCIFA--YGQTGSGKTYTM 486 (764)
Q Consensus 454 f~~v~plV-~svl~G---~N~~Ifa--YGqTGSGKTyTm 486 (764)
.+.+...+ ..+..| ...+++- ||++|+|||+.+
T Consensus 31 l~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 31 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 34455555 666666 5567888 999999999886
No 148
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=58.82 E-value=3.8 Score=42.67 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=26.5
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEec
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm~ 487 (764)
+||.+. .|+++...+...+. .|. ...++-||++|+|||+++.
T Consensus 24 ~~~~iv----g~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 24 TIDECI----LPAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp STTTSC----CCHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHHH
T ss_pred CHHHHh----CcHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHHH
Confidence 355554 44555544444444 343 3567888999999999873
No 149
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=58.39 E-value=3.4 Score=41.54 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=20.6
Q ss_pred HHHHHHCC--CCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDG--YNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G--~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..++.| +.-|++-||+.|+|||+...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 34455555 33579999999999998764
No 150
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.30 E-value=3.3 Score=42.34 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.3
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456788999999999876
No 151
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=57.62 E-value=2.1 Score=41.94 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=18.6
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
.+..+++|.++ +..++||||||.+
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHH
Confidence 45666778775 5668999999986
No 152
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=57.08 E-value=3.6 Score=42.06 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=28.1
Q ss_pred eEEEcceecCCCCChHhHHhhhHHHHHH-----HHCCC----CeEEEeeccCCCCCceEe
Q 004272 436 KSFSFNKVYGPSATQAEVFSDMQPLIRS-----VLDGY----NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 436 ~~F~FD~VF~~~atQ~eVf~~v~plV~s-----vl~G~----N~~IfaYGqTGSGKTyTm 486 (764)
..++||.+.+.+ ++...+..++.. ++.+. ...|+-||++|||||+.+
T Consensus 35 ~~~~~~~i~g~~----~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAE----EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCH----HHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChH----HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 346788877654 333333333332 22211 223899999999999887
No 153
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.06 E-value=3 Score=42.95 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=15.9
Q ss_pred CCeEEEeeccCCCCCceEe
Q 004272 468 YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm 486 (764)
....+.-.|+||||||+++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 4456778899999999988
No 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.74 E-value=3.8 Score=42.04 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=27.9
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHH------HHC---CCCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRS------VLD---GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~s------vl~---G~N~~IfaYGqTGSGKTyTm 486 (764)
...|+.+.+. +++-..+..++.. .+. .....|+-||++|+|||+..
T Consensus 17 ~~~~~~i~G~----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQ----DVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCC----HHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCCh----HHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3567777764 3344433333322 112 23567899999999999865
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=56.05 E-value=5.3 Score=42.07 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=24.4
Q ss_pred CChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 448 ATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 448 atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|+++.+.+...+.. ......++-||++|+|||++.
T Consensus 19 vg~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 3456666555444433 223456889999999999886
No 156
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=55.69 E-value=3.9 Score=43.77 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=28.4
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHH---------HCCCCeEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSV---------LDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~sv---------l~G~N~~IfaYGqTGSGKTyTm 486 (764)
..||.+.+ ++++.+.+..+|... +.+....|+-||++|+|||++.
T Consensus 81 ~~~~~i~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAG----VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCC----hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 45666665 344544444443321 2244567899999999999876
No 157
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.87 E-value=72 Score=26.53 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhH
Q 004272 317 QSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHR 376 (764)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 376 (764)
++..-......++..++.|+..++..+.+-..++..+..-+..|.-++.+|.+...+..+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444556667778888888888888777777788888788888888777765544443
No 158
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=54.74 E-value=4.2 Score=43.21 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.+-.++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 4567778874455677889999999873
No 159
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=54.69 E-value=3.7 Score=47.68 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=20.0
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.|..++.....+ +-.|+.|||||+|+..
T Consensus 197 AV~~al~~~~~~-lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 197 AVLFALSQKELA-IIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHCSSEE-EEECCTTSCHHHHHHH
T ss_pred HHHHHhcCCCce-EEECCCCCCHHHHHHH
Confidence 456666544454 4669999999999843
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=53.41 E-value=1.7 Score=45.03 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=24.5
Q ss_pred EEcceecCCCCChHhHHhhh-HHHHH-HHHCCCC----eEEEeeccCCCCCceEe
Q 004272 438 FSFNKVYGPSATQAEVFSDM-QPLIR-SVLDGYN----VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v-~plV~-svl~G~N----~~IfaYGqTGSGKTyTm 486 (764)
.+||.|-+.+.--+++.+.+ .|+-. .++++.+ .-++-||++|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 55666665544444444432 33321 2333222 12889999999999775
No 161
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=53.40 E-value=4.2 Score=40.92 Aligned_cols=26 Identities=27% Similarity=0.091 Sum_probs=19.0
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..++++.+ ++.+|+||+|||++..
T Consensus 101 ai~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 101 ALERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 3445667766 5667899999999864
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=53.25 E-value=4.4 Score=42.78 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=39.5
Q ss_pred EEcceecCCCCChHhHHhhhHHHHH------HHHCCC---CeEEEeeccCCCCCceEec-------CC-------CCCCc
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIR------SVLDGY---NVCIFAYGQTGSGKTYTMT-------GP-------RELTE 494 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~------svl~G~---N~~IfaYGqTGSGKTyTm~-------G~-------~~~~~ 494 (764)
.+||.|.+.+ ++-+.+...|. .++.|. ...|+-||++|+|||+... |. .....
T Consensus 9 ~~~~di~G~~----~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLE----GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCH----HHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCHHHhcCHH----HHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4567766643 44444333332 233332 2468889999999998762 21 11111
Q ss_pred ccccchHHHHHHHHHHHhh
Q 004272 495 KSQGVNYRALSDLFLIAEQ 513 (764)
Q Consensus 495 ~~~GIi~ral~~LF~~~~~ 513 (764)
...|-....++.+|.....
T Consensus 85 ~~~g~~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARE 103 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 2235556677777776544
No 163
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.69 E-value=68 Score=29.21 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHhhhhhhhhcc
Q 004272 321 QKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDL 391 (764)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~r~l~n~~~~l 391 (764)
...+|+.+..++..|+..+..++.+.+.....|...+..|+..+....+ .-++.+.++..|-.++.++
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~---~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQH---LRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999888888888888888876644322 1233444555565555554
No 164
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=52.50 E-value=5.1 Score=41.16 Aligned_cols=26 Identities=42% Similarity=0.523 Sum_probs=19.2
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..+++|.++ +..++||||||.+..
T Consensus 24 ~i~~i~~~~~~--lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 24 TIPLMLQGKNV--VVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHHH
T ss_pred HHHHHhcCCCE--EEEcCCCCcHHHHHH
Confidence 45566788874 556799999998653
No 165
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=52.30 E-value=6.8 Score=43.67 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=22.4
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+..+++.+-.+....++-||++|+|||+...+
T Consensus 189 i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 33444444445556678899999999998754
No 166
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=52.23 E-value=4.9 Score=42.28 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=20.2
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|..-.++..++||||||.+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 3556677884344577789999999754
No 167
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=51.97 E-value=4.5 Score=43.05 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=19.6
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 50 EAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 45566778887 466789999999754
No 168
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=51.95 E-value=5.8 Score=43.75 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=21.3
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..++.|.+-.++..|+||||||.+
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 345666777666788999999999976
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=51.51 E-value=2.6 Score=43.28 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=21.5
Q ss_pred hHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
|+++.+.+...+. .|....++-||++|+|||++.
T Consensus 22 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 22 QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp CHHHHHHHHTTTT---TTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHHHHHHHHh---CCCCCeEEEECcCCcCHHHHH
Confidence 4444444333332 354334888999999999876
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.15 E-value=4.1 Score=42.62 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=19.8
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+...+..|....++-||++|+|||+++
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 33444444553334888999999999886
No 171
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.08 E-value=5.6 Score=45.30 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=20.8
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..++..+..|.+-++++ ++||||||.++.
T Consensus 188 ~~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 188 NRAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 44555556687665555 899999999964
No 172
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=51.07 E-value=6.7 Score=41.85 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=20.2
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.+ ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 45667788988 466789999999764
No 173
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=50.28 E-value=5.3 Score=45.27 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=17.2
Q ss_pred HHCCCCeEEEeeccCCCCCceEec
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+-.|.+ |.-.|+||||||+||-
T Consensus 257 v~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 257 IEHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HHTTCC--EEEEESTTSSHHHHHH
T ss_pred HhCCCE--EEEECCCCCCHHHHHH
Confidence 346776 5668999999999873
No 174
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.74 E-value=6.6 Score=41.48 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=26.9
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHH-CC-CCeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVL-DG-YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl-~G-~N~~IfaYGqTGSGKTyTm 486 (764)
.|+.+++ |..+.+.+.-.|.... .| ..-.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 4666664 4556666554554432 12 2134667999999999876
No 175
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=49.31 E-value=6 Score=41.43 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=22.8
Q ss_pred hHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 452 EVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 452 eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..+...+..+. ..+..|+-||++|+|||+..
T Consensus 9 ~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 9 PAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 33444444444443 44667888999999999865
No 176
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=49.10 E-value=6.8 Score=41.05 Aligned_cols=45 Identities=29% Similarity=0.536 Sum_probs=27.9
Q ss_pred eEEEeeccCCCCCceEecC------CC-------CCCcccccchHHHHHHHHHHHhhh
Q 004272 470 VCIFAYGQTGSGKTYTMTG------PR-------ELTEKSQGVNYRALSDLFLIAEQR 514 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~G------~~-------~~~~~~~GIi~ral~~LF~~~~~~ 514 (764)
..|+-||++|+|||+.... .+ .......|-....++.+|......
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~ 109 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 109 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhc
Confidence 4689999999999987622 00 000112345566677788766544
No 177
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=48.53 E-value=3.8 Score=44.38 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=16.6
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
.....|.-.|+||||||+++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34556788999999999998
No 178
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=48.37 E-value=6.2 Score=42.43 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=19.3
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..+++|.| ++..++||||||..
T Consensus 28 ~~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 28 LWAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 35566678886 46888999999984
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.72 E-value=2.9 Score=44.04 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=13.8
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999987
No 180
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=47.52 E-value=78 Score=26.76 Aligned_cols=61 Identities=10% Similarity=0.154 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHH
Q 004272 318 SLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVL 378 (764)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 378 (764)
+..-......++..++.|+..++..+.+-..++..+..-+..|.-++.+|.+...+..+.+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3344455566777888888888888887777888888888888888888777655555443
No 181
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=47.44 E-value=3.9 Score=49.24 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=28.3
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.||.+++. + +++..+++.+..+....++-||++|+|||+.+.+
T Consensus 168 ~ld~viGr----~---~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGR----D---EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSC----H---HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCc----H---HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 45555553 3 2345555555566655678899999999998744
No 182
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.88 E-value=12 Score=41.94 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=48.3
Q ss_pred EEcceecCCCCChHhHHhhh-HHHHH-HHHC--C--CCeEEEeeccCCCCCceEe--------------cCCCCCCcccc
Q 004272 438 FSFNKVYGPSATQAEVFSDM-QPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTM--------------TGPRELTEKSQ 497 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v-~plV~-svl~--G--~N~~IfaYGqTGSGKTyTm--------------~G~~~~~~~~~ 497 (764)
.+||.|-+-+.--+++.+.| -|+.. ..+. | ..-.|+-||++|+|||++. .|+. ......
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~-L~sk~v 284 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE-LVQKYV 284 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG-GCCCSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH-hhcccC
Confidence 56777766554444444433 34432 2333 3 3456899999999999653 2221 122345
Q ss_pred cchHHHHHHHHHHHhhhcc
Q 004272 498 GVNYRALSDLFLIAEQRKD 516 (764)
Q Consensus 498 GIi~ral~~LF~~~~~~~~ 516 (764)
|--.+.++.+|........
T Consensus 285 Gesek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKKA 303 (467)
T ss_dssp SHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHhcCC
Confidence 7788999999998876654
No 183
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=46.80 E-value=6.6 Score=38.91 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=18.2
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+++++-.|.-++| .|++|||||+.+
T Consensus 15 ~l~~i~~Ge~~~l--iG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVFG--LGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEEE--ECCTTSSTTHHH
T ss_pred HHHhccCCCEEEE--ECCCCCCHHHHH
Confidence 4455556665554 799999999887
No 184
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.63 E-value=8.6 Score=45.41 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=27.7
Q ss_pred ChHhHHhhhHHHHHHHHCCCC------eEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~N------~~IfaYGqTGSGKTyTm 486 (764)
.|+++...+...+.....|.. ..++-||++|+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 466666666666666665554 36889999999999876
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=45.53 E-value=8.3 Score=41.54 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=27.7
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHH------C---CCCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVL------D---GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl------~---G~N~~IfaYGqTGSGKTyTm 486 (764)
.+.||.+.+. +.+.+.+..++...+ . .-...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQ----DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSC----HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCH----HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3567777664 444444433332211 1 22457899999999999876
No 186
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=45.27 E-value=9.5 Score=40.61 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=19.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.|+ +..++||||||.+.
T Consensus 44 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 44 HAIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 345667889886 56789999999754
No 187
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=45.21 E-value=11 Score=39.47 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
-++.-.|++|||||+|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46778899999999998
No 188
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=44.92 E-value=4.7 Score=41.22 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=17.1
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+..++.|.++.| .++||||||.+..
T Consensus 122 i~~~l~~~~~ll--~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRRIL--NLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEEEE--CCCTTSCHHHHHH
T ss_pred HHHHHhcCCeEE--EcCCCCCcHHHHH
Confidence 344455555433 8999999998864
No 189
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.49 E-value=5.9 Score=40.64 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=21.5
Q ss_pred hHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
|+++.+.+... +-.|.-..++-||++|+|||++.
T Consensus 26 ~~~~~~~l~~~---l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 26 NKETIDRLQQI---AKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CTHHHHHHHHH---HHSCCCCCEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHH---HHcCCCCeEEEECcCCCCHHHHH
Confidence 44444444333 33454333888999999999876
No 190
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=44.11 E-value=7.5 Score=43.54 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=18.6
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceE
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
+..++.|.+-.++..++||||||.+
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 4556777344557789999999987
No 191
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=43.94 E-value=10 Score=41.51 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=20.2
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|..++.|.++ ++.++||||||.+.
T Consensus 85 ~ai~~i~~g~d~--i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 85 CSIPVISSGRDL--MACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhcCCCE--EEECCCCCCchHHH
Confidence 456677889885 66779999999853
No 192
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=43.72 E-value=7 Score=38.35 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=21.2
Q ss_pred HHHHHHHCC-C--CeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDG-Y--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G-~--N~~IfaYGqTGSGKTyTm 486 (764)
+-++.++.| . ...+.-+|++|||||+.+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 456777754 2 456778999999999887
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=43.70 E-value=13 Score=42.89 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=20.4
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+|..++.|.+ +++.++||+|||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 45677788988 466789999999753
No 194
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=43.64 E-value=11 Score=44.33 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=27.3
Q ss_pred ChHhHHhhhHHHHHHHHCCCC------eEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~N------~~IfaYGqTGSGKTyTm 486 (764)
.|+++-..+...+.....|.. ..++-||++|+|||++.
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 455666666556666665653 57899999999999876
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=43.48 E-value=11 Score=39.98 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=15.5
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|.-.|++|||||+|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457778899999999987
No 196
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.34 E-value=5.4 Score=45.00 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=27.9
Q ss_pred EcceecCCCCChHhHHhhhHHHHHHHH----CC----------CCeEEEeeccCCCCCceEe
Q 004272 439 SFNKVYGPSATQAEVFSDMQPLIRSVL----DG----------YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 439 ~FD~VF~~~atQ~eVf~~v~plV~svl----~G----------~N~~IfaYGqTGSGKTyTm 486 (764)
+|+.+.+ ++.+.+.+..++.... .| ..-.++-||++|+|||++.
T Consensus 37 ~~~dliG----~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 37 NLQQVCG----NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 4566554 4555555555554432 11 2357888999999999886
No 197
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=43.17 E-value=6.7 Score=43.43 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=25.0
Q ss_pred CCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 446 PSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 446 ~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+..|.+++..+. ..+-+|. ..++..|..|||||+++
T Consensus 26 Ln~~Q~~av~~~~---~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 26 LTEGQKNAFNIVM---KAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CCHHHHHHHHHHH---HHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred CCHHHHHHHHHHH---HHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 3556777766543 2333343 37888999999999877
No 198
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=43.16 E-value=5.1 Score=41.87 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=16.5
Q ss_pred HHHCCCCeEEEeeccCCCCCceEe
Q 004272 463 SVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 463 svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+..|. .++-||++|+|||+..
T Consensus 42 ~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTC--CEEEESCCCHHHHHHH
T ss_pred HHHcCC--eEEEECCCCCcHHHHH
Confidence 334454 4677999999999877
No 199
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.76 E-value=1.2e+02 Score=28.27 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhh
Q 004272 250 VLSKLVEEFEHRIAS 264 (764)
Q Consensus 250 ~~~~~~~~~~~~~~~ 264 (764)
-|.+|...++.+|..
T Consensus 29 ~L~~vA~~vd~km~e 43 (138)
T 3hnw_A 29 YLQRVASYINNKITE 43 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 200
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=42.67 E-value=11 Score=42.46 Aligned_cols=46 Identities=26% Similarity=0.470 Sum_probs=29.6
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHHC-------C--CCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVLD-------G--YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl~-------G--~N~~IfaYGqTGSGKTyTm 486 (764)
..+|+.|.+. +++-.++..++..+-. | ....|+-||++|+|||+..
T Consensus 12 ~~~f~di~G~----~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGA----EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSC----HHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCc----HHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4567777654 5555555555554321 1 2345899999999999865
No 201
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=42.65 E-value=16 Score=36.86 Aligned_cols=29 Identities=34% Similarity=0.470 Sum_probs=20.4
Q ss_pred HHHHHHHHCCC-----CeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLDGY-----NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~G~-----N~~IfaYGqTGSGKTyTm 486 (764)
..++..++.|+ ...|+-.|++|||||+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 44555666544 356889999999998753
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.46 E-value=7.5 Score=45.86 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=22.5
Q ss_pred hHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 457 MQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 457 v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
+..+++.+.......++-||++|+|||+.+.+
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 34455544555566678899999999987643
No 203
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=42.31 E-value=8.4 Score=40.97 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=14.9
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|+-||++|+|||++.
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346778999999999875
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.76 E-value=10 Score=45.55 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=27.0
Q ss_pred ChHhHHhhhHHHHHHHHCCCC------eEEEeeccCCCCCceEe
Q 004272 449 TQAEVFSDMQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 449 tQ~eVf~~v~plV~svl~G~N------~~IfaYGqTGSGKTyTm 486 (764)
.|+.+...+...|..+..|.. ..|+-||++|+|||++.
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 355666666666666655422 68899999999999875
No 205
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=41.74 E-value=13 Score=41.81 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..|..++.|.+--++..++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 456677766555678889999999986
No 206
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=41.73 E-value=9.3 Score=42.23 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=19.1
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+..++.|.++ +..++||||||.+.
T Consensus 12 ~i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCChHHHHH
Confidence 45566788875 55689999999773
No 207
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=41.58 E-value=6.7 Score=41.92 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=15.3
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456889999999999875
No 208
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.07 E-value=5.7 Score=37.58 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.5
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
++.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56678999999999884
No 209
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=40.59 E-value=7.6 Score=35.58 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 210
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=40.22 E-value=7.9 Score=44.38 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=22.9
Q ss_pred hHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 452 EVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 452 eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
++...+.+--..++.-.+..++..|..|||||+|+.
T Consensus 5 ~~~~~Ln~~Q~~av~~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 5 YLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp HHHTTCCHHHHHHHTCCSSCEEEEECTTSCHHHHHH
T ss_pred HhhhcCCHHHHHHHhCCCCCEEEEECCCCCHHHHHH
Confidence 344444333333444445667888999999999984
No 211
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=39.97 E-value=5.6 Score=41.97 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=19.6
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.++ +..++||||||.+.
T Consensus 50 ~~i~~i~~~~~~--lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 50 RAIMPIIEGHDV--LAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHHTCCE--EECCCSSHHHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 355667778774 56789999999873
No 212
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=39.86 E-value=12 Score=39.37 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=19.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+..++.|.++ +..++||||||.+.
T Consensus 37 ~~i~~~~~~~~~--lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMDV--LCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCCE--EEECSSCSSHHHHH
T ss_pred HHHHHHhcCCcE--EEECCCCCcHHHHH
Confidence 456677788874 55679999999864
No 213
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=39.60 E-value=13 Score=41.23 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=19.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|..++.|.|+ +..++||||||.+.
T Consensus 14 ~~i~~~~~~~~~--l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 14 ELAQPAINGKNA--LICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Confidence 355667788884 56789999999774
No 214
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=39.54 E-value=9.1 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=18.2
Q ss_pred HHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 461 IRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 461 V~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
|..++.| ..++..|++|||||+|+.
T Consensus 158 i~~~l~~--~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 158 AAVALTR--RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp HHHHHTB--SEEEEECCTTSTHHHHHH
T ss_pred HHHHhcC--CCEEEEeCCCCCHHHHHH
Confidence 3444543 467888999999998863
No 215
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=39.46 E-value=13 Score=41.93 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=29.1
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHHHHH-----CCC----CeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIRSVL-----DGY----NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~svl-----~G~----N~~IfaYGqTGSGKTyTm 486 (764)
.++||.|.+ ++++-..+..++..+- ... ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G----~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAG----AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCS----CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCC----cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 456777665 4555555555555432 111 224899999999999876
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=39.21 E-value=14 Score=41.50 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=28.3
Q ss_pred EEEcceecCCCCChHhHHhhh-HHH-----HHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDM-QPL-----IRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v-~pl-----V~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
...|+.+.+.+..-..+.+.+ .|+ ....-......|+-||++|+|||+..
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 356666665443333344333 111 11111244567899999999999876
No 217
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.11 E-value=1.1e+02 Score=33.09 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004272 313 ELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKF 353 (764)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 353 (764)
+...+....+..|+.+-..|+-|+.-|.....+|++|....
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777788889988888888888887765
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=39.06 E-value=8 Score=41.60 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=16.6
Q ss_pred HHHCCCCeEEEeeccCCCCCceEe
Q 004272 463 SVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 463 svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+-.|.+++| .|+||||||+++
T Consensus 171 ~i~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEE--EESSSSCHHHHH
T ss_pred HHhcCCEEEE--ECCCCCCHHHHH
Confidence 3446776654 499999999987
No 219
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.02 E-value=96 Score=34.97 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 004272 312 EELKSQSLKQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSN 359 (764)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 359 (764)
+|.+++....+..|+.|-..|+.|+..|+....+|++|.....-++..
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677778888888888999999999999999999988877655543
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=38.79 E-value=8.5 Score=37.22 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=18.6
Q ss_pred HHHHHHC-CC--CeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLD-GY--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~-G~--N~~IfaYGqTGSGKTyTm 486 (764)
-++.++. |. ...+.-+|++|||||+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 4556664 32 235566899999999876
No 221
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.53 E-value=1.7e+02 Score=26.44 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 004272 325 FDQQHEDIQELKH 337 (764)
Q Consensus 325 ~~~~~~~~~~l~~ 337 (764)
+..++.+++.++.
T Consensus 45 iq~L~~el~~l~~ 57 (129)
T 3tnu_B 45 IQRLRAEIDNVKK 57 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 222
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=38.51 E-value=17 Score=39.27 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=15.0
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
.+|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999998
No 223
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=38.46 E-value=9.5 Score=36.75 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=21.2
Q ss_pred HHHHHHHC-CC--CeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLD-GY--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~-G~--N~~IfaYGqTGSGKTyTm 486 (764)
+-++.++. |. ...+.-+|++|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 35677775 44 357888999999999876
No 224
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=37.95 E-value=11 Score=36.58 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred HHHHHHHC-CC--CeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLD-GY--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~-G~--N~~IfaYGqTGSGKTyTm 486 (764)
+-++.++. |. .-.+.-+|++|||||+.+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 44566774 33 356778899999999886
No 225
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=37.72 E-value=2.5e+02 Score=27.03 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=10.5
Q ss_pred HHhhhhHHHHHHhhhhhhhh
Q 004272 370 AASGYHRVLEENRKLYNQVQ 389 (764)
Q Consensus 370 ~~~~~~~~~~e~r~l~n~~~ 389 (764)
....+.++..++|+|+..+-
T Consensus 109 ~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 109 LKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666555544
No 226
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=37.69 E-value=14 Score=43.14 Aligned_cols=41 Identities=32% Similarity=0.516 Sum_probs=29.8
Q ss_pred cCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 444 YGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 444 F~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
|.|...|..-+.. ++..+-.|... ....|.||||||+||..
T Consensus 7 ~~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 7 PSPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 3788888777654 56666677543 34579999999999953
No 227
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=37.66 E-value=12 Score=39.97 Aligned_cols=17 Identities=41% Similarity=0.810 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-||++|+|||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 35788999999999876
No 228
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=37.53 E-value=1e+02 Score=26.86 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Q 004272 321 QKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHG 366 (764)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (764)
....+.+|-.+++-++.++-.+...-.+++..|.+++.+|...|..
T Consensus 41 yE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 41 YDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455888888999999999998888888999999999999887754
No 229
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=37.34 E-value=10 Score=41.60 Aligned_cols=26 Identities=27% Similarity=0.091 Sum_probs=18.9
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..++.|.+ ++..|+||||||.+..
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 4455666655 5667899999999863
No 230
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=36.98 E-value=9.7 Score=39.48 Aligned_cols=26 Identities=38% Similarity=0.440 Sum_probs=18.1
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+..++.|... ++..++||||||.+.
T Consensus 36 ~i~~~~~~~~~-~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDEYN-IVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTCSE-EEEECCSSSSHHHHH
T ss_pred HHHHHhCCCCC-EEEECCCCChHHHHH
Confidence 45556667432 456789999999874
No 231
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=36.85 E-value=7.3 Score=37.26 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.-.|++|||||+++
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 232
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=36.78 E-value=11 Score=43.58 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
..+..|++|||||+|+.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 45678999999999963
No 233
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=36.09 E-value=13 Score=41.13 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=27.9
Q ss_pred EEEcceecCCCCChHhHHhhhHHHHH------HHHCC---CCeEEEeeccCCCCCceEe
Q 004272 437 SFSFNKVYGPSATQAEVFSDMQPLIR------SVLDG---YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v~plV~------svl~G---~N~~IfaYGqTGSGKTyTm 486 (764)
...|+.|.+. +++-..+...|. .++.| ....|+-||++|+|||++.
T Consensus 130 ~~~~~di~G~----~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGL----EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSC----HHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCH----HHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3567777663 444444433332 22222 2356888999999999876
No 234
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=36.03 E-value=17 Score=40.44 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=24.4
Q ss_pred HhHHhhhHHHHHHHHC---------CCCeEEEeeccCCCCCceEec
Q 004272 451 AEVFSDMQPLIRSVLD---------GYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 451 ~eVf~~v~plV~svl~---------G~N~~IfaYGqTGSGKTyTm~ 487 (764)
+.|...+..-+..++. +....|+..|.+|+|||+|..
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHH
Confidence 4444445444444444 234678889999999999974
No 235
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=36.01 E-value=8.9 Score=37.42 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
-.|.-.|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666899999999876
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=35.80 E-value=13 Score=36.10 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=18.6
Q ss_pred HHHHHHH--CCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVL--DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl--~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+++.+. .+..-.|.-.|++|||||+.+
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3444443 234456667899999999876
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=35.76 E-value=18 Score=40.08 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=15.1
Q ss_pred CeEEEeeccCCCCCceEec
Q 004272 469 NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~ 487 (764)
...|+..|++|+|||+|+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3456667999999999973
No 238
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=35.45 E-value=58 Score=30.99 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=17.9
Q ss_pred HHHhhhhhhhhhHHHHhhhhHHHHHHhhhhh
Q 004272 356 EFSNLGIHIHGLAHAASGYHRVLEENRKLYN 386 (764)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~~~~~e~r~l~n 386 (764)
++.....+|++|......|+.....|+.++.
T Consensus 20 rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 20 RIKQKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555555556666666666666654
No 239
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=35.22 E-value=16 Score=42.16 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
.+|..++.|.|+ +..++||||||..
T Consensus 20 ~~i~~~l~g~~~--iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 20 ELALPAMKGKNT--IICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHHHcCCCE--EEEcCCCchHHHH
Confidence 345667788885 5678999999985
No 240
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=34.98 E-value=10 Score=35.19 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|.+|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 36888999999998753
No 241
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=34.83 E-value=12 Score=36.08 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=20.7
Q ss_pred HHHHHHHHC---CCCeEEEeeccCCCCCceEe
Q 004272 458 QPLIRSVLD---GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 458 ~plV~svl~---G~N~~IfaYGqTGSGKTyTm 486 (764)
..+++.+.. .....|.-.|++|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 445555553 34467888999999999876
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=34.54 E-value=8.3 Score=36.46 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|.-.|++|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999876
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=34.34 E-value=8.4 Score=36.64 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.+.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999998876
No 244
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=34.17 E-value=16 Score=42.11 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=20.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+|..+++|.+ ++..++||||||.+.
T Consensus 14 ~~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 14 EVAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 35666778887 466789999999875
No 245
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=34.10 E-value=11 Score=41.49 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=19.5
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
+|..++.|.+. ++..|+||||||.+
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 35667888776 45679999999986
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=33.90 E-value=11 Score=39.42 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
.|.-.|++|+|||+|+.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55567999999999983
No 247
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=33.83 E-value=68 Score=28.14 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHH
Q 004272 333 QELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRV 377 (764)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 377 (764)
+||........+.+.....++.+|+..|...++.++.+++.++..
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555555555566666667777777777777777776666544
No 248
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=33.63 E-value=9.2 Score=39.97 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=16.8
Q ss_pred HHHCCCCeEEEeeccCCCCCceEe
Q 004272 463 SVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 463 svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+++|.+..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 467899999999999999999876
No 249
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=33.59 E-value=20 Score=40.58 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=20.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
.+|..++.|.+--+++.++||||||.+
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 466777755445567788999999986
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=33.45 E-value=11 Score=35.40 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998754
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=33.27 E-value=11 Score=35.05 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999998765
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.08 E-value=22 Score=41.95 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 458 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 458 ~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..+++.+..+....++-||++|+|||....+
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 4444545556666688899999999987643
No 253
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=32.46 E-value=14 Score=41.77 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
.+|.-.|++|||||+++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 36777899999999987
No 254
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=32.25 E-value=18 Score=42.63 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=24.5
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.....++++ ++.|-||+.-|.+|||||.+.
T Consensus 77 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 77 MYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 5554333333333 699999999999999999763
No 255
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=31.80 E-value=8.8 Score=41.32 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.++..|+||||||+++
T Consensus 37 ~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTA 52 (392)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred ceEEEcCCCCCHHHHH
Confidence 3466799999999987
No 256
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=31.58 E-value=87 Score=29.89 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=19.6
Q ss_pred HHHccchhHHHHHHHhhcCCCC
Q 004272 72 RLGLRSGIILCNVINKVQPGAV 93 (764)
Q Consensus 72 ~~~LrdGvvLC~L~N~l~Pg~v 93 (764)
.+-|.||++|..+++.|.|..-
T Consensus 30 ~~dL~DG~~L~~iL~~IDp~~F 51 (164)
T 1wix_A 30 VKQLTNGVTMAQVLHQIDVAWF 51 (164)
T ss_dssp HHHHTTSHHHHHHHHHHCTTTS
T ss_pred HHHhccHHHHHHHHHHhCcccc
Confidence 4679999999999999999764
No 257
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=31.40 E-value=9 Score=36.58 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999886
No 258
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=31.40 E-value=10 Score=36.50 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=12.8
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999887
No 259
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=30.99 E-value=13 Score=36.67 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=9.1
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999886
No 260
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.98 E-value=9.8 Score=42.01 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=19.9
Q ss_pred HHCCCCeEEEeeccCCCCCceEe
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+++|.+..|.-.|++|+|||+.|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999865
No 261
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=30.88 E-value=16 Score=41.25 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=19.2
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.++..+..|. -|+-||++|+|||+...
T Consensus 33 ~l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 33 LCLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 3444455565 46779999999998763
No 262
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=30.76 E-value=12 Score=39.39 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.-.|++|||||+++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4555699999999988
No 263
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=30.60 E-value=20 Score=42.73 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=24.5
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.....++++ ++.|-||+.-|.+|||||.+.
T Consensus 155 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 155 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 5554333333333 699999999999999999764
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=30.59 E-value=9.8 Score=38.63 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=17.2
Q ss_pred CeEEEeeccCCCCCceEecC
Q 004272 469 NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G 488 (764)
...||..|..|+||||+|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 46699999999999999854
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=30.59 E-value=9.8 Score=36.91 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.+.-.|++|||||+++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999887
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=30.53 E-value=11 Score=36.04 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999875
No 267
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=30.52 E-value=9.8 Score=41.51 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.3
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
+.-++..|+||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 456788999999999986
No 268
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=30.45 E-value=11 Score=38.85 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=15.6
Q ss_pred CCeEEEeeccCCCCCceEe
Q 004272 468 YNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm 486 (764)
|+-++...|++|+|||+.|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3457788899999999876
No 269
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=30.34 E-value=20 Score=42.83 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=24.3
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.....++++ ++.|-||+.-|.+|||||.+.
T Consensus 123 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 123 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 5554333333333 599999999999999999653
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=30.18 E-value=11 Score=35.78 Aligned_cols=16 Identities=31% Similarity=0.411 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.-.|++|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999876
No 271
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=30.10 E-value=13 Score=34.94 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999865
No 272
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=29.77 E-value=14 Score=39.57 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
..+..++.| -++..++||+|||.+..-
T Consensus 16 ~~i~~~~~~---~~ll~~~tG~GKT~~~~~ 42 (494)
T 1wp9_A 16 VIYAKCKET---NCLIVLPTGLGKTLIAMM 42 (494)
T ss_dssp HHHHHGGGS---CEEEECCTTSCHHHHHHH
T ss_pred HHHHHHhhC---CEEEEcCCCCCHHHHHHH
Confidence 345666777 345568999999998643
No 273
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=29.58 E-value=11 Score=36.98 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
.+.-.|++|||||+.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45558999999999874
No 274
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=29.57 E-value=9.7 Score=38.32 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.5
Q ss_pred CeEEEeeccCCCCCceEecC
Q 004272 469 NVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm~G 488 (764)
-..++-||++|||||..+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 34678899999999988865
No 275
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=29.51 E-value=9 Score=37.02 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=15.2
Q ss_pred EEEeeccCCCCCceEecC
Q 004272 471 CIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G 488 (764)
.++-||+.|||||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999998854
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=29.14 E-value=15 Score=35.35 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999764
No 277
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=28.95 E-value=18 Score=43.34 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=19.4
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..|..++.+ ...+..|++|||||+|+.
T Consensus 363 ~Av~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 363 YAVKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 345555653 345679999999999974
No 278
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=28.91 E-value=18 Score=34.32 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.6
Q ss_pred CCCCeEEEeeccCCCCCceEe
Q 004272 466 DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+....|.-.|++|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 455667888999999999764
No 279
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=28.86 E-value=21 Score=43.79 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=24.6
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-......+++ ++.|-||+..|.+|||||.+.
T Consensus 155 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 155 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 5554333333333 699999999999999999764
No 280
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=28.77 E-value=20 Score=35.06 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=18.7
Q ss_pred HHHHHCC-C--CeEEEeeccCCCCCceEe
Q 004272 461 IRSVLDG-Y--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 461 V~svl~G-~--N~~IfaYGqTGSGKTyTm 486 (764)
++.++.| . ...+.-+|++|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4556543 2 346777999999999985
No 281
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=28.71 E-value=22 Score=42.51 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=24.3
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.....++++ ++.|-||+.-|.+|||||.+.
T Consensus 139 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 139 IFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 5554333333333 589999999999999999663
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=28.49 E-value=16 Score=34.19 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998754
No 283
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=28.48 E-value=25 Score=43.06 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=18.4
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
.|..++.|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 4556678865 57789999999954
No 284
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=28.47 E-value=21 Score=42.98 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=24.5
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.....++++ ++.|-||+.-|.+|||||.+.
T Consensus 152 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 152 LFSVADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 5554333333333 699999999999999999764
No 285
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=28.43 E-value=16 Score=43.61 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..|..++.+ ..++..|+.|||||+|+.
T Consensus 367 ~Av~~~l~~--~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 367 NAVSHVLQR--PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHHHTTC--SEEEEECSTTSSHHHHHH
T ss_pred HHHHHHhcC--CCEEEECCCCCCHHHHHH
Confidence 345555543 345679999999999974
No 286
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=28.33 E-value=23 Score=42.32 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=24.7
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.....++++ ++.|-||+.-|.+|||||.+.
T Consensus 154 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 154 IFSISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 5554333333333 699999999999999999764
No 287
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=28.23 E-value=12 Score=36.26 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHCCCCeEEEeeccCCCCCceEe
Q 004272 463 SVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 463 svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
++-.|.- +.-.|++|||||+++
T Consensus 16 ~i~~Gei--~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRV--VVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCE--EEEECSTTSSHHHHH
T ss_pred CCCCCCE--EEEECCCCCCHHHHH
Confidence 3444543 445699999999877
No 288
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=28.22 E-value=14 Score=41.68 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=19.6
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+|..+++|.++. ..++||||||.+.
T Consensus 32 ~~i~~il~g~d~l--v~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDCL--VVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCEE--EECSCHHHHHHHH
T ss_pred HHHHHHHcCCCEE--EECCCCcHHHHHH
Confidence 4566778898764 4579999999754
No 289
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=28.12 E-value=23 Score=43.46 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=24.4
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-......+++ ++.|-||+.-|.+|||||.+.
T Consensus 129 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 129 VYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred HHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 5554333333333 699999999999999999763
No 290
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=27.96 E-value=18 Score=41.58 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=18.4
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
.|..++.+ ..++-.|+.|||||+|+..
T Consensus 197 Av~~~~~~--~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 197 VLDQLAGH--RLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp HHHHHTTC--SEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHhC--CEEEEEcCCCCCHHHHHHH
Confidence 34444443 4566789999999998743
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=27.91 E-value=16 Score=33.54 Aligned_cols=16 Identities=19% Similarity=0.023 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999764
No 292
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=27.73 E-value=25 Score=43.34 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCce
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTY 484 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTy 484 (764)
..+..+++|.|+ +..++||||||.
T Consensus 63 ~ai~~il~g~dv--lv~apTGSGKTl 86 (1054)
T 1gku_B 63 MWAKRILRKESF--AATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHHTTCCE--ECCCCBTSCSHH
T ss_pred HHHHHHHhCCCE--EEEcCCCCCHHH
Confidence 355667889875 677899999994
No 293
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=27.54 E-value=26 Score=41.94 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=46.5
Q ss_pred EEEcceecCCCCChHhHHhhh-HHHHH-HHHCCCC----eEEEeeccCCCCCceEec------CCC-------CCCcccc
Q 004272 437 SFSFNKVYGPSATQAEVFSDM-QPLIR-SVLDGYN----VCIFAYGQTGSGKTYTMT------GPR-------ELTEKSQ 497 (764)
Q Consensus 437 ~F~FD~VF~~~atQ~eVf~~v-~plV~-svl~G~N----~~IfaYGqTGSGKTyTm~------G~~-------~~~~~~~ 497 (764)
..+||.|-+-+..-+++.+.| -|+-. .++.++. ..|+-||++|+|||...- |.+ +......
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 467888887776666665554 34442 3455543 469999999999996541 100 0011233
Q ss_pred cchHHHHHHHHHHHhhh
Q 004272 498 GVNYRALSDLFLIAEQR 514 (764)
Q Consensus 498 GIi~ral~~LF~~~~~~ 514 (764)
|-..+.++.+|......
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 55566777777766543
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=27.47 E-value=15 Score=33.92 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|.-.|++|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999865
No 295
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=27.42 E-value=1.6e+02 Score=26.40 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 004272 324 IFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHI 364 (764)
Q Consensus 324 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (764)
.++...-...+|...+.+.+.++.++++.|.+++..|..++
T Consensus 77 ~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 77 DVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444556777777788888888888888887776544
No 296
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=27.42 E-value=21 Score=42.65 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=27.4
Q ss_pred CCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 445 GPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 445 ~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
.+..-|.+++..+ ....-.|....++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 4566677776653 34445666566788899999999765
No 297
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=27.35 E-value=18 Score=37.17 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..++-+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999876
No 298
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=27.04 E-value=17 Score=36.84 Aligned_cols=15 Identities=47% Similarity=0.519 Sum_probs=12.6
Q ss_pred EEEeeccCCCCCceE
Q 004272 471 CIFAYGQTGSGKTYT 485 (764)
Q Consensus 471 ~IfaYGqTGSGKTyT 485 (764)
.|+-.|++|||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999874
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=27.01 E-value=40 Score=35.11 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCceEec
Q 004272 471 CIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~ 487 (764)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55556999999999873
No 300
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=26.75 E-value=12 Score=39.73 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=15.7
Q ss_pred HHCCCCeEEEeeccCCCCCceEe
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+-.|.++ .-.|+||||||+++
T Consensus 168 i~~g~~v--~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNV--IVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCE--EEEESTTSCHHHHH
T ss_pred ccCCCEE--EEECCCCCCHHHHH
Confidence 3357655 45699999999987
No 301
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=26.70 E-value=25 Score=43.37 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=25.1
Q ss_pred HHhhhHHHHHHHH-CCCCeEEEeeccCCCCCceEe
Q 004272 453 VFSDMQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 453 Vf~~v~plV~svl-~G~N~~IfaYGqTGSGKTyTm 486 (764)
||.-.......++ ++.|-||+.-|.+|||||.+.
T Consensus 127 IfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 127 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 5654433344433 699999999999999999764
No 302
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=26.69 E-value=26 Score=36.82 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=22.2
Q ss_pred hHhHHhhhHHHHHHHHCCC-CeEEEeeccCCCCCceEe
Q 004272 450 QAEVFSDMQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 450 Q~eVf~~v~plV~svl~G~-N~~IfaYGqTGSGKTyTm 486 (764)
|+++++. +...+-.|. .-.++-||+.|+|||.+.
T Consensus 7 ~~~~~~~---l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEK---LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHH---HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHH---HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 4444444 333444554 446888999999999875
No 303
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=26.58 E-value=23 Score=43.08 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=19.7
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceEec
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
.|..++.|.|+ +..++||||||.+..
T Consensus 256 ai~~il~g~~~--ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 256 LAQPAINGKNA--LICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHHH
T ss_pred HHHHHHcCCCE--EEEeCCCchHHHHHH
Confidence 45566789885 557899999998753
No 304
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=26.01 E-value=31 Score=35.88 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=15.9
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
+....|.-.|++|||||+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 44566777899999999875
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=25.98 E-value=26 Score=33.66 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=15.6
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
.....|.-.|++|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34556778899999999765
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=25.84 E-value=13 Score=36.26 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.+.-.|++|+|||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566799999999987
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=25.68 E-value=14 Score=34.59 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5567899999999865
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=25.66 E-value=18 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.5
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999864
No 309
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=25.59 E-value=29 Score=41.05 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=19.8
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..|..++.|.|+ +..++||||||.+.
T Consensus 255 ~~i~~~l~~~~~--ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 255 ELAQPAINGKNA--LICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHHhCCCE--EEEeCCCChHHHHH
Confidence 355667889875 56789999999874
No 310
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=25.44 E-value=19 Score=33.72 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999764
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=25.43 E-value=19 Score=33.74 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|..|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998764
No 312
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.17 E-value=4.3e+02 Score=25.81 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=15.9
Q ss_pred hhHHHHhhhhHHHHHHhhhhhhhhc
Q 004272 366 GLAHAASGYHRVLEENRKLYNQVQD 390 (764)
Q Consensus 366 ~~~~~~~~~~~~~~e~r~l~n~~~~ 390 (764)
++.+....|..+++.+--|-+.+.+
T Consensus 131 SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 131 SLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888766555554443
No 313
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=25.02 E-value=13 Score=36.58 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.0
Q ss_pred EEeeccCCCCCceEe
Q 004272 472 IFAYGQTGSGKTYTM 486 (764)
Q Consensus 472 IfaYGqTGSGKTyTm 486 (764)
+.-.|++|||||+++
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999876
No 314
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=25.00 E-value=11 Score=36.81 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.3
Q ss_pred EEEeeccCCCCCceEecC
Q 004272 471 CIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G 488 (764)
.++-||+.|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 577899999999988765
No 315
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=24.67 E-value=31 Score=40.18 Aligned_cols=47 Identities=28% Similarity=0.563 Sum_probs=34.8
Q ss_pred EEcceecCCCCChHhHHhhhHHHHHHHHCCCCeEEEeeccCCCCCceEecC
Q 004272 438 FSFNKVYGPSATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTG 488 (764)
Q Consensus 438 F~FD~VF~~~atQ~eVf~~v~plV~svl~G~N~~IfaYGqTGSGKTyTm~G 488 (764)
|....-|.|...|..-+.. ++..+-.|... ....|.|||||||||..
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 6666678899999877665 56666677533 34569999999999964
No 316
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=24.65 E-value=20 Score=33.13 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=20.3
Q ss_pred HHHHHHC-CCCeEEEeeccCCCCCceEe
Q 004272 460 LIRSVLD-GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 460 lV~svl~-G~N~~IfaYGqTGSGKTyTm 486 (764)
+++.++. ....-|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 4444555 56778889999999999766
No 317
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.45 E-value=3.6e+02 Score=30.11 Aligned_cols=9 Identities=0% Similarity=-0.141 Sum_probs=2.8
Q ss_pred hhhhccCCC
Q 004272 386 NQVQDLKGS 394 (764)
Q Consensus 386 n~~~~lkg~ 394 (764)
...+.+.+|
T Consensus 576 ~l~~~~~~~ 584 (597)
T 3oja_B 576 QLEAKKNRN 584 (597)
T ss_dssp HHHHTTC--
T ss_pred HHHHHhcCC
Confidence 333444444
No 318
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=24.24 E-value=22 Score=36.64 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.7
Q ss_pred HCCCCeEEEeeccCCCCCceEe
Q 004272 465 LDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 465 l~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.. ..++-||+.|+|||+.+
T Consensus 28 l~~--~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 28 LRA--PITLVLGLRRTGKSSII 47 (357)
T ss_dssp TCS--SEEEEEESTTSSHHHHH
T ss_pred hcC--CcEEEECCCCCCHHHHH
Confidence 544 48899999999999876
No 319
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=24.16 E-value=24 Score=32.90 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=10.1
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999998754
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=24.04 E-value=19 Score=34.65 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=12.6
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|++|||||+..
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999998754
No 321
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.90 E-value=26 Score=38.29 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3578899999999874
No 322
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=23.87 E-value=21 Score=33.31 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998754
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=23.75 E-value=20 Score=34.06 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999764
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=23.72 E-value=22 Score=33.10 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=13.9
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|.-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35777899999999865
No 325
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.68 E-value=3.3e+02 Score=22.90 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhH
Q 004272 320 KQKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHR 376 (764)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 376 (764)
..++.+.+.+.+++.|+.+=..++.+-+++ .+-+.+|......+......|++
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL----~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKL----EEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999888777766655543 33344444444444444444443
No 326
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=23.61 E-value=20 Score=39.70 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=16.9
Q ss_pred HHHHCCCCeEEEeeccCCCCCceEec
Q 004272 462 RSVLDGYNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 462 ~svl~G~N~~IfaYGqTGSGKTyTm~ 487 (764)
..++.|.+ ++..|+||||||.+..
T Consensus 123 ~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 123 FEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 33444544 4667999999999864
No 327
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.57 E-value=2.9e+02 Score=24.84 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHhhhhhhhhccCC
Q 004272 322 KMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEFSNLGIHIHGLAHAASGYHRVLEENRKLYNQVQDLKG 393 (764)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~r~l~n~~~~lkg 393 (764)
....+....++++|...+......+..|+..|...-.....++..|.. .|.+++.++..|++
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~----------~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ----------SREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=23.57 E-value=17 Score=36.24 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.6
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788899999999876
No 329
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=23.24 E-value=20 Score=33.02 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999998754
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=23.22 E-value=21 Score=33.66 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=14.5
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|+-.|..|||||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456778899999998765
No 331
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=23.19 E-value=19 Score=33.36 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=13.1
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
...-+|++|||||..+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457899999999876
No 332
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=23.09 E-value=19 Score=41.74 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.7
Q ss_pred CCeEEEeeccCCCCCceEec
Q 004272 468 YNVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 468 ~N~~IfaYGqTGSGKTyTm~ 487 (764)
.+..++..|..|||||+|+.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 35667788999999999995
No 333
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=23.06 E-value=21 Score=34.05 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=20.9
Q ss_pred hHHHHHHH-HCCCCeEEEeeccCCCCCceEe
Q 004272 457 MQPLIRSV-LDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 457 v~plV~sv-l~G~N~~IfaYGqTGSGKTyTm 486 (764)
..++++.+ +.-...-|.-.|.+|+|||..+
T Consensus 12 ~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp -CHHHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 34455555 4444566888999999999876
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=22.55 E-value=23 Score=33.44 Aligned_cols=16 Identities=44% Similarity=0.600 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999998764
No 335
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=22.55 E-value=18 Score=34.80 Aligned_cols=16 Identities=44% Similarity=0.314 Sum_probs=13.1
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|--.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 336
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=22.36 E-value=22 Score=37.33 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
-.|.-.|++|+|||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999988
No 337
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=22.35 E-value=19 Score=34.65 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=13.5
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
-.|.-.|+.|||||+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999865
No 338
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=22.23 E-value=21 Score=41.80 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=15.9
Q ss_pred HHHCCCCeEEEeeccCCCCCceE
Q 004272 463 SVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 463 svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..++|.+ ++..|+||||||+.
T Consensus 151 r~l~rk~--vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 151 RAMQRKI--IFHSGPTNSGKTYH 171 (677)
T ss_dssp HTSCCEE--EEEECCTTSSHHHH
T ss_pred HhcCCCE--EEEEcCCCCCHHHH
Confidence 4456654 57889999999984
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=21.98 E-value=23 Score=33.07 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=12.8
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|+.|||||+.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3677899999998753
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=21.93 E-value=22 Score=33.28 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=12.8
Q ss_pred EEEeeccCCCCCceE
Q 004272 471 CIFAYGQTGSGKTYT 485 (764)
Q Consensus 471 ~IfaYGqTGSGKTyT 485 (764)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 377789999999875
No 341
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=21.56 E-value=20 Score=33.86 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=14.4
Q ss_pred eEEEeeccCCCCCceEec
Q 004272 470 VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~ 487 (764)
-++.-.|+.|||||+.+-
T Consensus 34 e~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356678999999999773
No 342
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=21.47 E-value=20 Score=35.64 Aligned_cols=16 Identities=19% Similarity=0.357 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
++.-.|++|||||+.+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999998876
No 343
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=21.42 E-value=20 Score=36.01 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
++.-.|++|||||+.|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556799999999875
No 344
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=21.40 E-value=24 Score=33.79 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=14.4
Q ss_pred CeEEEeeccCCCCCceEe
Q 004272 469 NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 469 N~~IfaYGqTGSGKTyTm 486 (764)
...|+-.|..|||||+..
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346788899999999754
No 345
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=21.38 E-value=49 Score=36.49 Aligned_cols=18 Identities=44% Similarity=0.516 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCCceEec
Q 004272 470 VCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm~ 487 (764)
..|.-.|++|+|||+|..
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357778999999999874
No 346
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.35 E-value=25 Score=32.78 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=21.2
Q ss_pred HhHHhhhHHHHHHHHC---CCCeEEEeeccCCCCCceEe
Q 004272 451 AEVFSDMQPLIRSVLD---GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 451 ~eVf~~v~plV~svl~---G~N~~IfaYGqTGSGKTyTm 486 (764)
..+.+.+..++...-. .+...|+..|.+|+|||..+
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp HHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHH
Confidence 3444444444443332 34567899999999999765
No 347
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=21.29 E-value=25 Score=33.05 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=14.0
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|..|||||+..
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46778899999999854
No 348
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=21.27 E-value=30 Score=42.96 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=18.4
Q ss_pred HHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 460 LIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 460 lV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
.|..++.|.++ +..|+||||||..
T Consensus 192 AI~~i~~g~dv--LV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGESV--LVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCCE--EEECCSSSHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCCChHHH
Confidence 45556778765 6789999999965
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=21.21 E-value=26 Score=32.16 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=13.1
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999998753
No 350
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=21.17 E-value=21 Score=36.36 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=17.5
Q ss_pred CCCCeEEEeeccCCCCCceEe
Q 004272 466 DGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 466 ~G~N~~IfaYGqTGSGKTyTm 486 (764)
.|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588899999999999999866
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=21.16 E-value=30 Score=33.04 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=15.8
Q ss_pred CCCeEEEeeccCCCCCceEe
Q 004272 467 GYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 467 G~N~~IfaYGqTGSGKTyTm 486 (764)
.....|+-.|..|||||+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34457888999999999864
No 352
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=21.12 E-value=21 Score=41.48 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=17.0
Q ss_pred HHHHCCCCeEEEeeccCCCCCceEe
Q 004272 462 RSVLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 462 ~svl~G~N~~IfaYGqTGSGKTyTm 486 (764)
..+++|.|+ +..|+||||||...
T Consensus 35 ~~i~~~~~~--lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 35 EKVFSGKNL--LLAMPTAAGKTLLA 57 (702)
T ss_dssp HHHTTCSCE--EEECSSHHHHHHHH
T ss_pred HHHhCCCcE--EEEcCCccHHHHHH
Confidence 334567765 56789999999875
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.00 E-value=26 Score=32.70 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 354
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=20.98 E-value=36 Score=42.23 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCeEEEeeccCCCCCceE
Q 004272 459 PLIRSVLDGYNVCIFAYGQTGSGKTYT 485 (764)
Q Consensus 459 plV~svl~G~N~~IfaYGqTGSGKTyT 485 (764)
..+..++.|.|+ ++.++||||||..
T Consensus 85 ~ai~~il~g~dv--lv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 85 LWAKRIVQGKSF--TMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHHTTTCCE--EECCSTTCCHHHH
T ss_pred HHHHHHHcCCCE--EEEeCCCCcHHHH
Confidence 356667788875 6788999999983
No 355
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=20.93 E-value=41 Score=35.64 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=21.8
Q ss_pred HHHHHHHCC-C--CeEEEeeccCCCCCceEec
Q 004272 459 PLIRSVLDG-Y--NVCIFAYGQTGSGKTYTMT 487 (764)
Q Consensus 459 plV~svl~G-~--N~~IfaYGqTGSGKTyTm~ 487 (764)
+-++.++.| . ...+.-||++|||||..+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 457778864 3 4567889999999998763
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=20.75 E-value=25 Score=35.07 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHH
Q 004272 471 CIFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFL 509 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~ 509 (764)
.||-.|++||||++--.= -....|+..-...+||.
T Consensus 31 iI~llGpPGsGKgTqa~~----L~~~~g~~hIstGdllR 65 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEK----LVQKFHFNHLSSGDLLR 65 (217)
T ss_dssp EEEEECCTTCCHHHHHHH----HHHHHCCEEECHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH----HHHHHCCceEcHHHHHH
Confidence 578899999999763210 01223554444555554
No 357
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=20.74 E-value=22 Score=41.60 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=15.6
Q ss_pred HHCCCCeEEEeeccCCCCCceEe
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm 486 (764)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 345655 677899999999664
No 358
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=20.72 E-value=24 Score=34.57 Aligned_cols=16 Identities=44% Similarity=0.611 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCceEe
Q 004272 471 CIFAYGQTGSGKTYTM 486 (764)
Q Consensus 471 ~IfaYGqTGSGKTyTm 486 (764)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567899999999976
No 359
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=20.64 E-value=27 Score=37.23 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=13.6
Q ss_pred eEEEeeccCCCCCceE
Q 004272 470 VCIFAYGQTGSGKTYT 485 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyT 485 (764)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688899999999974
No 360
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=20.63 E-value=31 Score=37.99 Aligned_cols=14 Identities=36% Similarity=0.282 Sum_probs=12.1
Q ss_pred EEeeccCCCCCceE
Q 004272 472 IFAYGQTGSGKTYT 485 (764)
Q Consensus 472 IfaYGqTGSGKTyT 485 (764)
++..++||||||..
T Consensus 24 vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 24 TVLDLHPGSGKTRK 37 (459)
T ss_dssp EEECCCTTSCTTTT
T ss_pred EEEECCCCCCHHHH
Confidence 46679999999987
No 361
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=20.58 E-value=40 Score=34.97 Aligned_cols=28 Identities=39% Similarity=0.395 Sum_probs=20.6
Q ss_pred HHHHHHHCC-C--CeEEEeeccCCCCCceEe
Q 004272 459 PLIRSVLDG-Y--NVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 459 plV~svl~G-~--N~~IfaYGqTGSGKTyTm 486 (764)
+-++.++.| . ...+.-||++|||||..+
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 345667753 3 456888999999999876
No 362
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.58 E-value=3.1e+02 Score=23.18 Aligned_cols=37 Identities=8% Similarity=0.191 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004272 321 QKMIFDQQHEDIQELKHTLHTTKAGIQFMQMKFHEEF 357 (764)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 357 (764)
....++.++.+++.|+-.++...-++..++..-++..
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666655555444433
No 363
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=20.53 E-value=27 Score=33.31 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788899999999764
No 364
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=20.50 E-value=31 Score=37.81 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=15.9
Q ss_pred HHCCCCeEEEeeccCCCCCceEe
Q 004272 464 VLDGYNVCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 464 vl~G~N~~IfaYGqTGSGKTyTm 486 (764)
++.|.|+ +..|+||||||...
T Consensus 5 l~~g~~v--lv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMTT--VLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCEE--EECCCTTSSTTTTH
T ss_pred hhCCCCE--EEEcCCCCCHHHHH
Confidence 3456654 67789999999884
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=20.46 E-value=25 Score=34.45 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|.+|||||+..
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999864
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=20.43 E-value=27 Score=35.30 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCCceEe
Q 004272 470 VCIFAYGQTGSGKTYTM 486 (764)
Q Consensus 470 ~~IfaYGqTGSGKTyTm 486 (764)
..|+-.|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46888999999999854
No 367
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=20.28 E-value=25 Score=34.59 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEeeccCCCCCceEecCCCCCCcccccchHHHHHHHHH
Q 004272 472 IFAYGQTGSGKTYTMTGPRELTEKSQGVNYRALSDLFL 509 (764)
Q Consensus 472 IfaYGqTGSGKTyTm~G~~~~~~~~~GIi~ral~~LF~ 509 (764)
|+-.|++||||++--.= -....|+..-...+||.
T Consensus 3 Iil~GpPGsGKgTqa~~----La~~~g~~~istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR----LAKEKGFVHISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHH----HHHHHCCEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHH----HHHHHCCeEEcHHHHHH
Confidence 67889999999753210 01234555555555654
No 368
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.06 E-value=3.6e+02 Score=22.32 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004272 318 SLKQKMIFDQQHEDIQELKHTLHTTKAGIQFM 349 (764)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 349 (764)
+.++-..+.+++..|++|...|....+++..+
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555444444443
No 369
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.01 E-value=2.1e+02 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 004272 328 QHEDIQELKHTLHTTKAGIQF 348 (764)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~~ 348 (764)
+..+|+.|+..+...|-++..
T Consensus 7 lkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
Done!