Query 004273
Match_columns 764
No_of_seqs 597 out of 4103
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 19:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-37 1E-41 345.0 41.2 500 65-677 66-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.7E-37 3E-41 341.3 40.4 497 120-729 82-593 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.3E-29 4.4E-34 270.0 22.8 195 397-662 28-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.2E-28 1.4E-32 258.4 23.5 184 509-692 26-218 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3E-23 1E-27 217.9 45.5 284 99-421 11-297 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.5E-23 1.2E-27 217.4 45.8 375 167-663 8-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 4E-20 1.4E-24 202.1 40.9 340 52-422 6-365 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.1E-20 2.1E-24 200.6 38.3 250 376-677 202-477 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.2E-19 7.6E-24 192.5 37.2 337 43-421 18-406 (450)
10 3fp2_A TPR repeat-containing p 99.9 7.5E-19 2.6E-23 193.1 39.4 333 51-423 24-372 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.4E-19 1.2E-23 191.1 33.4 321 69-431 9-364 (450)
12 3fp2_A TPR repeat-containing p 99.8 1.5E-18 5E-23 190.8 33.4 430 87-642 25-490 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 1.1E-13 3.9E-18 155.8 57.4 552 58-736 991-1580(1630)
14 3ieg_A DNAJ homolog subfamily 99.8 2.8E-16 9.7E-21 162.5 34.6 311 53-392 4-335 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 1.4E-13 4.8E-18 155.0 53.5 555 9-671 987-1585(1630)
16 3ieg_A DNAJ homolog subfamily 99.8 7.3E-16 2.5E-20 159.4 33.4 305 87-430 3-340 (359)
17 3spa_A Mtrpol, DNA-directed RN 99.8 2E-18 6.9E-23 187.9 12.4 150 509-663 127-286 (1134)
18 3hym_B Cell division cycle pro 99.8 6.1E-16 2.1E-20 157.9 30.5 284 85-405 20-314 (330)
19 3hym_B Cell division cycle pro 99.7 1.2E-15 4.1E-20 155.7 30.6 297 53-379 23-321 (330)
20 2xm6_A Protein corresponding t 99.7 1.4E-13 4.8E-18 148.6 45.7 284 295-644 113-433 (490)
21 3spa_A Mtrpol, DNA-directed RN 99.7 5.8E-18 2E-22 184.3 10.9 123 541-663 124-250 (1134)
22 1fch_A Peroxisomal targeting s 99.7 5.7E-16 1.9E-20 161.0 25.3 291 62-389 35-356 (368)
23 1fch_A Peroxisomal targeting s 99.7 8.7E-16 3E-20 159.6 26.6 314 62-421 11-356 (368)
24 2ooe_A Cleavage stimulation fa 99.7 7.2E-14 2.5E-18 152.6 42.4 163 511-677 323-491 (530)
25 2xm6_A Protein corresponding t 99.7 9E-13 3.1E-17 142.3 49.0 352 225-679 37-433 (490)
26 1b89_A Protein (clathrin heavy 99.7 2.2E-15 7.5E-20 152.4 25.7 238 99-408 15-254 (449)
27 4eqf_A PEX5-related protein; a 99.7 1.4E-15 4.9E-20 157.7 23.4 267 86-388 64-352 (365)
28 2ooe_A Cleavage stimulation fa 99.7 2E-13 6.9E-18 149.0 41.6 165 476-642 320-491 (530)
29 4eqf_A PEX5-related protein; a 99.7 1.3E-15 4.4E-20 158.1 22.1 265 121-420 64-352 (365)
30 1b89_A Protein (clathrin heavy 99.7 2.6E-15 8.8E-20 151.9 23.0 281 64-417 15-304 (449)
31 3cv0_A Peroxisome targeting si 99.7 6.9E-15 2.3E-19 149.8 24.4 269 48-353 17-311 (327)
32 3cv0_A Peroxisome targeting si 99.7 1.7E-14 5.8E-19 146.9 25.7 265 86-387 20-310 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 2.1E-14 7.2E-19 142.6 25.5 254 14-322 6-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.6 4.7E-14 1.6E-18 140.1 24.4 253 59-357 6-264 (291)
35 4g1t_A Interferon-induced prot 99.6 1.4E-12 4.8E-17 140.3 33.2 138 494-643 317-459 (472)
36 4g1t_A Interferon-induced prot 99.6 2.4E-12 8.2E-17 138.5 32.7 270 85-391 49-362 (472)
37 1xnf_A Lipoprotein NLPI; TPR, 99.5 9E-13 3.1E-17 130.3 20.6 248 98-418 16-269 (275)
38 2ho1_A Type 4 fimbrial biogene 99.5 7.7E-12 2.6E-16 121.8 25.3 211 46-262 31-242 (252)
39 3uq3_A Heat shock protein STI1 99.5 4.5E-12 1.5E-16 123.8 23.2 190 53-255 6-201 (258)
40 3uq3_A Heat shock protein STI1 99.5 3.9E-12 1.4E-16 124.2 22.4 227 88-358 6-237 (258)
41 2pl2_A Hypothetical conserved 99.5 3.1E-12 1.1E-16 121.1 20.4 196 159-390 6-212 (217)
42 2pl2_A Hypothetical conserved 99.5 2.3E-12 7.8E-17 122.0 19.2 196 53-254 6-212 (217)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.6E-12 1.2E-16 126.0 21.0 250 64-351 17-269 (275)
44 3e4b_A ALGK; tetratricopeptide 99.4 3.2E-11 1.1E-15 128.0 27.8 223 295-574 143-388 (452)
45 2vq2_A PILW, putative fimbrial 99.4 2.8E-11 9.4E-16 115.3 24.2 206 51-262 7-215 (225)
46 3e4b_A ALGK; tetratricopeptide 99.4 2.5E-11 8.6E-16 128.8 25.9 311 58-423 9-350 (452)
47 3u4t_A TPR repeat-containing p 99.4 3E-11 1E-15 119.1 24.2 160 92-255 8-170 (272)
48 2ho1_A Type 4 fimbrial biogene 99.4 2.6E-11 8.9E-16 118.0 23.4 165 88-255 38-203 (252)
49 2vq2_A PILW, putative fimbrial 99.4 3.4E-11 1.2E-15 114.7 23.6 200 87-321 8-210 (225)
50 2q7f_A YRRB protein; TPR, prot 99.4 8E-12 2.7E-16 120.8 19.2 206 50-262 21-226 (243)
51 3u4t_A TPR repeat-containing p 99.4 3.4E-11 1.2E-15 118.7 23.4 244 55-329 6-255 (272)
52 2h6f_A Protein farnesyltransfe 99.4 4.1E-11 1.4E-15 123.0 24.4 245 88-371 98-361 (382)
53 3sf4_A G-protein-signaling mod 99.4 8.5E-12 2.9E-16 131.1 19.2 278 52-356 9-335 (406)
54 2h6f_A Protein farnesyltransfe 99.4 1.4E-11 4.7E-16 126.5 19.8 241 3-262 93-352 (382)
55 3ro2_A PINS homolog, G-protein 99.4 1.6E-11 5.4E-16 125.2 19.4 278 52-356 5-331 (338)
56 2q7f_A YRRB protein; TPR, prot 99.4 2.2E-11 7.7E-16 117.6 18.8 164 88-255 24-187 (243)
57 4a1s_A PINS, partner of inscut 99.3 2E-11 6.9E-16 128.6 18.1 243 52-321 48-331 (411)
58 4a1s_A PINS, partner of inscut 99.3 1.2E-11 4E-16 130.4 16.0 281 6-322 47-372 (411)
59 4e6h_A MRNA 3'-END-processing 99.3 1.4E-08 4.9E-13 111.2 40.0 471 67-657 47-582 (679)
60 1ouv_A Conserved hypothetical 99.3 9.6E-10 3.3E-14 108.3 27.9 221 89-358 8-252 (273)
61 1ouv_A Conserved hypothetical 99.3 1.3E-09 4.3E-14 107.4 27.8 126 121-255 5-142 (273)
62 3sf4_A G-protein-signaling mod 99.3 1.6E-10 5.5E-15 121.3 22.0 276 87-389 9-333 (406)
63 3ro2_A PINS homolog, G-protein 99.3 1.4E-10 4.7E-15 118.1 20.1 275 90-391 8-331 (338)
64 2ond_A Cleavage stimulation fa 99.3 1.1E-09 3.8E-14 109.9 25.7 220 69-322 33-270 (308)
65 4e6h_A MRNA 3'-END-processing 99.2 1.2E-07 4E-12 104.1 41.7 457 103-679 48-571 (679)
66 3ulq_A Response regulator aspa 99.2 4.4E-10 1.5E-14 116.9 21.4 302 17-356 22-367 (383)
67 3vtx_A MAMA; tetratricopeptide 99.2 1.2E-09 4.1E-14 100.2 21.7 167 121-322 4-170 (184)
68 3vtx_A MAMA; tetratricopeptide 99.2 6.5E-10 2.2E-14 102.0 19.7 170 86-261 4-173 (184)
69 2ond_A Cleavage stimulation fa 99.2 4.9E-09 1.7E-13 105.1 27.7 218 104-358 33-271 (308)
70 4abn_A Tetratricopeptide repea 99.2 2.3E-10 8E-15 122.1 18.8 214 68-319 84-318 (474)
71 3nf1_A KLC 1, kinesin light ch 99.2 1E-10 3.5E-15 117.7 13.7 240 50-321 25-306 (311)
72 3ulq_A Response regulator aspa 99.2 1.6E-09 5.5E-14 112.6 23.0 301 59-389 19-365 (383)
73 3nf1_A KLC 1, kinesin light ch 99.2 4.4E-11 1.5E-15 120.5 10.5 249 4-255 24-306 (311)
74 4abn_A Tetratricopeptide repea 99.2 8E-10 2.7E-14 118.0 19.6 211 103-352 84-316 (474)
75 3q15_A PSP28, response regulat 99.1 3.6E-09 1.2E-13 109.7 21.3 305 18-356 23-364 (378)
76 1hz4_A MALT regulatory protein 99.1 3E-08 1E-12 102.5 27.6 168 199-391 141-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.1 4.1E-09 1.4E-13 96.5 17.3 163 52-219 8-170 (186)
78 3q15_A PSP28, response regulat 99.1 4.1E-08 1.4E-12 101.7 26.5 236 232-537 106-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.0 1.2E-08 4E-13 93.4 19.1 163 124-321 10-172 (186)
80 3edt_B KLC 2, kinesin light ch 99.0 1.5E-09 5E-14 107.4 13.6 236 17-255 11-280 (283)
81 1hz4_A MALT regulatory protein 99.0 5E-08 1.7E-12 100.9 25.3 268 128-423 20-321 (373)
82 4gyw_A UDP-N-acetylglucosamine 99.0 8E-09 2.7E-13 114.7 20.2 166 121-321 8-173 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.0 9.9E-09 3.4E-13 114.0 18.0 164 88-255 10-173 (723)
84 3edt_B KLC 2, kinesin light ch 99.0 1E-08 3.5E-13 101.2 15.9 160 62-221 11-197 (283)
85 4i17_A Hypothetical protein; T 99.0 3.2E-08 1.1E-12 94.3 18.7 198 53-262 8-213 (228)
86 4i17_A Hypothetical protein; T 98.9 4.9E-08 1.7E-12 92.9 18.9 183 38-233 28-220 (228)
87 3mv2_B Coatomer subunit epsilo 98.9 1.7E-07 5.9E-12 90.8 20.2 182 71-262 85-286 (310)
88 1qqe_A Vesicular transport pro 98.9 2.1E-07 7.3E-12 92.2 21.1 185 103-357 33-228 (292)
89 2fo7_A Synthetic consensus TPR 98.8 2.1E-07 7.2E-12 79.6 16.7 129 124-255 3-131 (136)
90 3qky_A Outer membrane assembly 98.8 1.5E-07 5E-12 91.8 17.0 187 53-262 16-228 (261)
91 3mv2_B Coatomer subunit epsilo 98.8 7.3E-07 2.5E-11 86.4 21.4 250 14-328 20-286 (310)
92 1qqe_A Vesicular transport pro 98.8 1.5E-07 5E-12 93.4 17.2 205 51-255 36-268 (292)
93 3qky_A Outer membrane assembly 98.8 1.6E-07 5.5E-12 91.4 17.0 80 38-117 36-127 (261)
94 2fo7_A Synthetic consensus TPR 98.8 3.1E-07 1E-11 78.6 16.4 130 160-322 3-132 (136)
95 2yhc_A BAMD, UPF0169 lipoprote 98.7 8.8E-07 3E-11 83.9 20.3 189 87-323 4-214 (225)
96 2r5s_A Uncharacterized protein 98.7 9.5E-08 3.2E-12 86.6 12.2 167 4-184 3-170 (176)
97 2pzi_A Probable serine/threoni 98.7 2.2E-07 7.5E-12 103.8 16.9 158 98-262 402-567 (681)
98 2pzi_A Probable serine/threoni 98.7 1.3E-07 4.6E-12 105.6 14.9 174 63-242 402-583 (681)
99 2uy1_A Cleavage stimulation fa 98.7 2.3E-05 7.7E-10 83.4 30.7 125 510-642 287-412 (493)
100 3qou_A Protein YBBN; thioredox 98.7 6.9E-07 2.4E-11 88.1 17.7 168 119-320 114-282 (287)
101 2ifu_A Gamma-SNAP; membrane fu 98.7 5.9E-07 2E-11 89.8 17.4 205 64-320 3-222 (307)
102 3urz_A Uncharacterized protein 98.6 4.7E-07 1.6E-11 84.5 14.8 163 54-222 6-186 (208)
103 3dra_A Protein farnesyltransfe 98.6 4.1E-06 1.4E-10 82.2 21.7 227 13-255 38-286 (306)
104 4ga2_A E3 SUMO-protein ligase 98.6 2.5E-07 8.6E-12 81.1 11.8 144 95-242 5-149 (150)
105 2uy1_A Cleavage stimulation fa 98.6 1.9E-05 6.5E-10 83.9 28.2 203 66-331 28-248 (493)
106 2r5s_A Uncharacterized protein 98.6 5.6E-07 1.9E-11 81.4 14.2 160 127-320 11-171 (176)
107 3dra_A Protein farnesyltransfe 98.6 1E-05 3.6E-10 79.2 23.8 232 55-321 35-286 (306)
108 3u3w_A Transcriptional activat 98.6 6.6E-06 2.3E-10 81.5 22.8 213 74-321 33-265 (293)
109 3urz_A Uncharacterized protein 98.6 1.1E-06 3.8E-11 82.0 16.0 74 164-238 60-133 (208)
110 3rjv_A Putative SEL1 repeat pr 98.6 2.8E-06 9.5E-11 79.4 18.6 178 69-258 3-199 (212)
111 4ga2_A E3 SUMO-protein ligase 98.6 3E-07 1E-11 80.5 11.3 130 128-262 3-133 (150)
112 2yhc_A BAMD, UPF0169 lipoprote 98.6 3E-06 1E-10 80.1 19.0 182 53-256 5-213 (225)
113 3qou_A Protein YBBN; thioredox 98.6 7.5E-07 2.6E-11 87.9 15.3 167 84-255 114-283 (287)
114 2ifu_A Gamma-SNAP; membrane fu 98.6 3.1E-06 1.1E-10 84.4 19.9 203 100-355 4-222 (307)
115 2vsy_A XCC0866; transferase, g 98.5 1.1E-06 3.6E-11 96.6 15.7 165 65-234 2-169 (568)
116 3rjv_A Putative SEL1 repeat pr 98.5 9.3E-06 3.2E-10 75.8 19.2 175 105-323 4-198 (212)
117 2vsy_A XCC0866; transferase, g 98.5 2.3E-06 8E-11 93.8 17.5 154 100-257 2-158 (568)
118 2qfc_A PLCR protein; TPR, HTH, 98.4 3E-05 1E-09 76.7 22.4 173 122-320 75-264 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.5E-05 5.1E-10 74.4 17.2 141 163-323 11-151 (213)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.3 1.5E-05 5.3E-10 74.4 17.1 129 56-189 10-152 (213)
121 3gyz_A Chaperone protein IPGC; 98.3 5E-06 1.7E-10 72.4 12.2 111 38-151 23-133 (151)
122 3u3w_A Transcriptional activat 98.3 4.4E-05 1.5E-09 75.4 20.7 164 514-677 80-265 (293)
123 1a17_A Serine/threonine protei 98.3 7.6E-06 2.6E-10 72.8 13.0 130 52-185 13-144 (166)
124 2qfc_A PLCR protein; TPR, HTH, 98.3 5.1E-05 1.7E-09 75.0 19.7 162 57-219 80-263 (293)
125 1na0_A Designed protein CTPR3; 98.3 1.2E-05 4E-10 67.3 12.9 94 54-149 11-104 (125)
126 4gco_A Protein STI-1; structur 98.3 1.7E-05 6E-10 66.7 13.7 108 124-234 15-122 (126)
127 3gyz_A Chaperone protein IPGC; 98.3 7.5E-06 2.6E-10 71.2 11.6 95 160-255 38-132 (151)
128 2vgx_A Chaperone SYCD; alterna 98.3 1.1E-05 3.7E-10 70.3 12.7 111 39-152 9-119 (148)
129 1a17_A Serine/threonine protei 98.2 2.9E-05 9.8E-10 69.0 15.7 129 124-255 15-145 (166)
130 4gco_A Protein STI-1; structur 98.2 1.5E-05 5.2E-10 67.0 13.0 103 46-151 8-110 (126)
131 1na0_A Designed protein CTPR3; 98.2 2.4E-05 8.4E-10 65.3 14.4 109 124-235 11-119 (125)
132 3q7a_A Farnesyltransferase alp 98.2 0.00021 7.3E-09 70.7 23.0 151 208-391 140-330 (349)
133 3dss_A Geranylgeranyl transfer 98.2 0.00046 1.6E-08 68.0 24.8 196 59-262 36-271 (331)
134 2e2e_A Formate-dependent nitri 98.2 1.3E-05 4.3E-10 72.4 12.8 123 62-188 20-145 (177)
135 3q7a_A Farnesyltransferase alp 98.2 0.00023 7.9E-09 70.5 22.5 221 101-357 68-331 (349)
136 2xcb_A PCRH, regulatory protei 98.2 1.4E-05 4.9E-10 69.0 12.5 111 39-152 6-116 (142)
137 2c2l_A CHIP, carboxy terminus 98.2 1.9E-05 6.4E-10 77.4 14.5 96 159-255 5-100 (281)
138 2c2l_A CHIP, carboxy terminus 98.2 8.3E-06 2.8E-10 80.0 11.7 193 53-255 5-198 (281)
139 3gw4_A Uncharacterized protein 98.2 2.7E-05 9.3E-10 71.9 14.7 100 196-321 69-175 (203)
140 2lni_A Stress-induced-phosphop 98.2 3.1E-05 1.1E-09 65.6 13.7 94 90-186 19-112 (133)
141 2lni_A Stress-induced-phosphop 98.2 3.5E-05 1.2E-09 65.3 13.9 120 49-172 13-132 (133)
142 2vyi_A SGTA protein; chaperone 98.2 2.7E-05 9.1E-10 65.7 13.1 118 122-242 12-129 (131)
143 3gw4_A Uncharacterized protein 98.1 2.3E-05 7.8E-10 72.4 13.3 125 206-356 5-135 (203)
144 2e2e_A Formate-dependent nitri 98.1 1.8E-05 6E-10 71.5 11.6 119 171-322 23-144 (177)
145 4f3v_A ESX-1 secretion system 98.1 3.7E-05 1.3E-09 73.5 13.8 189 60-256 15-237 (282)
146 2vgx_A Chaperone SYCD; alterna 98.1 2E-05 7E-10 68.5 11.2 95 124-221 23-117 (148)
147 2vyi_A SGTA protein; chaperone 98.1 3.9E-05 1.3E-09 64.7 12.2 99 157-256 11-109 (131)
148 1p5q_A FKBP52, FK506-binding p 98.1 6.4E-05 2.2E-09 75.8 15.6 152 102-255 128-293 (336)
149 1p5q_A FKBP52, FK506-binding p 98.0 6.3E-05 2.1E-09 75.8 14.8 152 136-321 127-293 (336)
150 2fbn_A 70 kDa peptidylprolyl i 98.0 1.3E-05 4.5E-10 73.9 8.7 132 123-255 39-185 (198)
151 4f3v_A ESX-1 secretion system 98.0 6.2E-05 2.1E-09 71.9 13.2 189 99-322 18-237 (282)
152 3sz7_A HSC70 cochaperone (SGT) 98.0 5.9E-05 2E-09 66.9 12.4 101 51-153 10-110 (164)
153 2fbn_A 70 kDa peptidylprolyl i 98.0 3E-05 1E-09 71.4 10.6 168 12-213 9-176 (198)
154 2kck_A TPR repeat; tetratricop 98.0 0.00011 3.8E-09 59.8 12.8 102 86-188 5-107 (112)
155 1elw_A TPR1-domain of HOP; HOP 98.0 0.00022 7.4E-09 58.6 14.7 103 124-229 6-108 (118)
156 3upv_A Heat shock protein STI1 98.0 0.00013 4.4E-09 61.2 13.4 94 90-186 7-100 (126)
157 3dss_A Geranylgeranyl transfer 97.9 0.0051 1.7E-07 60.5 25.8 220 100-358 42-305 (331)
158 2xcb_A PCRH, regulatory protei 97.9 0.0001 3.5E-09 63.4 12.1 94 90-186 21-114 (142)
159 2kck_A TPR repeat; tetratricop 97.9 0.00014 4.7E-09 59.2 12.4 95 160-255 8-105 (112)
160 4b4t_Q 26S proteasome regulato 97.9 0.00046 1.6E-08 72.4 19.5 198 58-255 10-244 (434)
161 4gcn_A Protein STI-1; structur 97.9 0.00024 8.2E-09 59.7 13.1 109 195-330 10-118 (127)
162 4b4t_Q 26S proteasome regulato 97.9 0.0004 1.4E-08 73.0 18.0 200 130-355 12-243 (434)
163 1hxi_A PEX5, peroxisome target 97.9 5.3E-05 1.8E-09 63.1 8.9 95 54-150 19-113 (121)
164 3upv_A Heat shock protein STI1 97.8 0.00024 8E-09 59.6 12.9 93 162-255 8-100 (126)
165 1elw_A TPR1-domain of HOP; HOP 97.8 0.00034 1.2E-08 57.3 13.5 97 158-255 4-100 (118)
166 3ro3_A PINS homolog, G-protein 97.8 0.00016 5.5E-09 63.5 12.1 143 123-321 10-157 (164)
167 3k9i_A BH0479 protein; putativ 97.8 3.3E-05 1.1E-09 63.9 6.6 87 65-152 3-91 (117)
168 4gcn_A Protein STI-1; structur 97.8 0.00025 8.6E-09 59.5 12.1 55 93-148 14-68 (127)
169 3q49_B STIP1 homology and U bo 97.8 0.00036 1.2E-08 59.3 13.4 96 159-255 10-105 (137)
170 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00018 6.1E-09 63.8 11.7 98 121-221 10-107 (164)
171 2dba_A Smooth muscle cell asso 97.8 0.00061 2.1E-08 58.7 15.0 96 88-187 29-128 (148)
172 3q49_B STIP1 homology and U bo 97.8 0.0003 1E-08 59.8 12.6 100 85-187 7-106 (137)
173 2dba_A Smooth muscle cell asso 97.7 0.00066 2.2E-08 58.5 14.2 97 121-221 27-127 (148)
174 1elr_A TPR2A-domain of HOP; HO 97.7 0.0003 1E-08 59.0 11.7 113 195-334 6-118 (131)
175 1hxi_A PEX5, peroxisome target 97.7 0.00023 7.8E-09 59.2 10.6 92 163-255 22-113 (121)
176 1elr_A TPR2A-domain of HOP; HO 97.7 0.00029 9.9E-09 59.1 11.5 97 90-187 7-108 (131)
177 3ro3_A PINS homolog, G-protein 97.7 0.00026 8.9E-09 62.1 11.1 134 52-185 9-156 (164)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00023 8E-09 75.0 11.2 95 122-219 317-412 (457)
179 2xev_A YBGF; tetratricopeptide 97.6 0.0012 4.2E-08 55.2 13.8 94 93-187 8-105 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00076 2.6E-08 71.1 14.3 151 102-254 249-413 (457)
181 2xev_A YBGF; tetratricopeptide 97.5 0.0013 4.3E-08 55.1 12.8 60 128-187 8-68 (129)
182 1wao_1 Serine/threonine protei 97.5 0.00011 3.8E-09 77.9 7.0 125 161-318 9-135 (477)
183 1wao_1 Serine/threonine protei 97.5 0.0003 1E-08 74.5 9.9 91 93-186 12-102 (477)
184 3k9i_A BH0479 protein; putativ 97.4 0.00033 1.1E-08 57.7 7.8 87 99-187 2-90 (117)
185 1ihg_A Cyclophilin 40; ppiase 97.4 0.0014 4.8E-08 66.7 13.1 125 123-248 224-362 (370)
186 3rkv_A Putative peptidylprolyl 97.3 0.0014 4.6E-08 57.8 11.1 67 194-262 64-130 (162)
187 3rkv_A Putative peptidylprolyl 97.3 0.0028 9.6E-08 55.7 12.6 95 90-186 14-125 (162)
188 2hr2_A Hypothetical protein; a 97.3 0.0018 6.3E-08 55.5 10.6 113 123-262 12-135 (159)
189 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00085 2.9E-08 67.5 10.1 128 124-255 181-327 (338)
190 1dce_A Protein (RAB geranylger 97.3 0.0082 2.8E-07 64.7 18.2 181 59-244 35-243 (567)
191 3n71_A Histone lysine methyltr 97.2 0.00052 1.8E-08 72.2 8.2 134 14-150 316-463 (490)
192 2kat_A Uncharacterized protein 97.2 0.001 3.6E-08 54.4 8.5 79 70-150 3-81 (115)
193 1ihg_A Cyclophilin 40; ppiase 97.2 0.0021 7.3E-08 65.4 12.4 101 160-262 225-340 (370)
194 1klx_A Cysteine rich protein B 97.2 0.012 4E-07 49.9 15.2 111 523-644 9-127 (138)
195 1dce_A Protein (RAB geranylger 97.2 0.017 5.9E-07 62.2 20.0 156 101-262 43-225 (567)
196 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00086 3E-08 67.5 9.1 130 159-322 180-328 (338)
197 2hr2_A Hypothetical protein; a 97.2 0.0061 2.1E-07 52.3 12.4 63 227-321 57-130 (159)
198 3n71_A Histone lysine methyltr 97.1 0.0013 4.3E-08 69.3 9.0 59 90-148 354-419 (490)
199 2l6j_A TPR repeat-containing p 97.1 0.00058 2E-08 55.4 5.1 90 578-670 3-99 (111)
200 2l6j_A TPR repeat-containing p 97.0 0.0013 4.6E-08 53.1 6.5 65 121-187 3-67 (111)
201 1klx_A Cysteine rich protein B 96.9 0.011 3.9E-07 50.0 12.2 110 67-188 10-127 (138)
202 3lvg_A Clathrin heavy chain 1; 96.9 6.8E-07 2.3E-11 89.1 -16.5 260 12-341 16-276 (624)
203 1na3_A Designed protein CTPR2; 96.9 0.0048 1.6E-07 47.5 8.8 60 90-150 12-71 (91)
204 2kat_A Uncharacterized protein 96.7 0.0072 2.5E-07 49.2 9.3 78 212-321 4-81 (115)
205 1zu2_A Mitochondrial import re 96.7 0.0044 1.5E-07 53.0 7.7 113 205-357 14-147 (158)
206 3ma5_A Tetratricopeptide repea 96.7 0.004 1.4E-07 49.3 7.1 59 124-184 9-67 (100)
207 1na3_A Designed protein CTPR2; 96.7 0.012 3.9E-07 45.3 9.6 65 121-187 8-72 (91)
208 1zu2_A Mitochondrial import re 96.6 0.0088 3E-07 51.2 8.5 52 209-262 62-124 (158)
209 3ma5_A Tetratricopeptide repea 96.4 0.016 5.5E-07 45.7 9.0 65 85-150 5-69 (100)
210 3lvg_A Clathrin heavy chain 1; 96.2 1.2E-06 4E-11 87.4 -19.6 459 87-671 54-534 (624)
211 3ly7_A Transcriptional activat 96.1 0.57 2E-05 46.3 19.6 142 505-652 190-346 (372)
212 1wy6_A Hypothetical protein ST 95.9 0.56 1.9E-05 38.0 15.2 138 100-259 20-157 (172)
213 3ly7_A Transcriptional activat 95.7 0.16 5.4E-06 50.2 13.6 139 190-360 191-342 (372)
214 3mkq_A Coatomer beta'-subunit; 95.6 0.45 1.5E-05 54.1 19.8 100 487-604 662-761 (814)
215 3qww_A SET and MYND domain-con 95.2 0.046 1.6E-06 56.3 8.7 86 557-642 311-410 (433)
216 2kc7_A BFR218_protein; tetratr 95.2 0.058 2E-06 42.1 7.4 57 129-187 7-64 (99)
217 3qww_A SET and MYND domain-con 95.2 0.056 1.9E-06 55.7 9.0 86 136-221 312-410 (433)
218 3qwp_A SET and MYND domain-con 95.0 0.11 3.7E-06 53.6 10.8 88 554-641 297-398 (429)
219 3bee_A Putative YFRE protein; 94.9 0.19 6.4E-06 38.7 9.3 66 85-151 4-72 (93)
220 3qwp_A SET and MYND domain-con 94.9 0.03 1E-06 57.9 6.0 103 9-114 289-398 (429)
221 3mkq_A Coatomer beta'-subunit; 94.6 0.42 1.4E-05 54.4 15.5 45 204-253 663-707 (814)
222 2kc7_A BFR218_protein; tetratr 94.6 0.16 5.5E-06 39.4 8.5 53 203-255 10-63 (99)
223 1pc2_A Mitochondria fission pr 94.6 0.41 1.4E-05 40.4 11.1 85 561-649 15-104 (152)
224 3mkq_B Coatomer subunit alpha; 94.2 1.6 5.6E-05 37.8 14.3 101 97-219 15-115 (177)
225 3bee_A Putative YFRE protein; 94.2 0.57 2E-05 35.9 10.6 64 578-642 5-71 (93)
226 4b4t_P 26S proteasome regulato 94.2 4.8 0.00016 41.5 20.7 166 199-390 143-322 (445)
227 2v5f_A Prolyl 4-hydroxylase su 93.9 0.48 1.6E-05 37.3 9.9 66 121-186 4-74 (104)
228 1pc2_A Mitochondria fission pr 93.7 0.46 1.6E-05 40.1 9.8 81 138-221 14-99 (152)
229 3u64_A Protein TP_0956; tetrat 93.7 3 0.0001 39.4 16.2 84 211-325 181-272 (301)
230 2v5f_A Prolyl 4-hydroxylase su 93.3 0.81 2.8E-05 35.9 10.4 71 578-650 4-80 (104)
231 3mkq_B Coatomer subunit alpha; 93.2 2.1 7.2E-05 37.1 13.2 47 132-185 15-61 (177)
232 3u64_A Protein TP_0956; tetrat 92.9 1.2 4.1E-05 42.1 12.1 63 546-608 201-269 (301)
233 4b4t_P 26S proteasome regulato 92.1 11 0.00039 38.7 19.8 51 171-221 29-84 (445)
234 1wy6_A Hypothetical protein ST 92.1 4.2 0.00014 33.1 15.0 64 616-680 93-156 (172)
235 4h7y_A Dual specificity protei 91.7 1.8 6E-05 36.1 10.2 31 507-537 11-47 (161)
236 4gns_B Protein CSD3, chitin bi 91.7 7.7 0.00026 42.6 18.5 53 202-254 346-398 (754)
237 1nzn_A CGI-135 protein, fissio 91.1 1.2 4.2E-05 36.0 8.7 83 593-677 15-102 (126)
238 1nzn_A CGI-135 protein, fissio 90.5 1.3 4.4E-05 35.9 8.3 84 67-151 16-103 (126)
239 4h7y_A Dual specificity protei 90.1 3 0.0001 34.8 10.2 103 543-647 12-127 (161)
240 4gns_B Protein CSD3, chitin bi 89.1 2.5 8.5E-05 46.4 11.9 54 235-320 345-398 (754)
241 1v54_E Cytochrome C oxidase po 87.7 2.6 9E-05 32.1 7.5 45 598-642 29-73 (109)
242 4ady_A RPN2, 26S proteasome re 87.1 44 0.0015 37.6 33.3 210 370-594 497-721 (963)
243 1v54_E Cytochrome C oxidase po 87.0 4.9 0.00017 30.7 8.6 62 173-234 25-86 (109)
244 2ff4_A Probable regulatory pro 84.4 3.4 0.00012 41.8 9.3 67 127-195 176-247 (388)
245 3ffl_A Anaphase-promoting comp 83.6 5.5 0.00019 33.9 8.5 73 43-115 11-91 (167)
246 2ff4_A Probable regulatory pro 82.2 5 0.00017 40.5 9.5 69 582-651 174-247 (388)
247 2y69_E Cytochrome C oxidase su 81.2 13 0.00043 30.2 9.1 62 173-234 68-129 (152)
248 4fhn_B Nucleoporin NUP120; pro 81.0 30 0.001 40.7 16.8 144 483-631 818-988 (1139)
249 2y69_E Cytochrome C oxidase su 80.6 14 0.00048 30.0 9.2 59 598-657 72-130 (152)
250 3o48_A Mitochondria fission 1 80.1 23 0.00077 28.9 10.5 66 611-676 37-105 (134)
251 1wdy_A 2-5A-dependent ribonucl 78.9 11 0.00036 35.7 10.4 82 59-146 9-93 (285)
252 3lpz_A GET4 (YOR164C homolog); 75.7 60 0.0021 31.4 22.0 171 476-677 34-215 (336)
253 1wdy_A 2-5A-dependent ribonucl 74.1 46 0.0016 31.0 13.5 83 300-387 152-240 (285)
254 4fhn_B Nucleoporin NUP120; pro 73.3 22 0.00074 41.9 12.6 87 295-383 901-991 (1139)
255 2p58_C Putative type III secre 73.1 26 0.00089 26.7 8.2 78 524-609 22-99 (116)
256 3o48_A Mitochondria fission 1 72.5 37 0.0013 27.6 9.9 74 575-650 36-112 (134)
257 3lpz_A GET4 (YOR164C homolog); 70.9 79 0.0027 30.6 22.9 136 366-522 38-180 (336)
258 2p58_C Putative type III secre 70.6 33 0.0011 26.1 8.8 88 99-196 19-106 (116)
259 4ady_A RPN2, 26S proteasome re 70.0 1.5E+02 0.0051 33.5 34.6 118 519-641 534-656 (963)
260 4b4t_R RPN7, 26S proteasome re 69.9 24 0.00082 36.0 10.7 97 511-607 133-236 (429)
261 4g8k_A 2-5A-dependent ribonucl 69.9 63 0.0022 31.3 13.7 57 297-362 26-86 (337)
262 1zbp_A Hypothetical protein VP 69.5 18 0.00062 33.6 8.4 53 203-255 7-59 (273)
263 2wpv_A GET4, UPF0363 protein Y 69.5 81 0.0028 30.2 21.6 173 475-678 31-217 (312)
264 2uwj_G Type III export protein 69.3 31 0.0011 26.2 7.9 88 99-196 18-105 (115)
265 2uwj_G Type III export protein 69.2 24 0.00084 26.8 7.3 78 524-609 21-98 (115)
266 3ffl_A Anaphase-promoting comp 68.9 18 0.0006 30.8 7.5 27 653-679 126-152 (167)
267 3esl_A Checkpoint serine/threo 66.1 53 0.0018 29.0 10.3 58 592-649 92-150 (202)
268 2wpv_A GET4, UPF0363 protein Y 64.3 1E+02 0.0035 29.5 22.0 170 366-571 36-215 (312)
269 1zbp_A Hypothetical protein VP 60.4 23 0.00077 33.0 7.2 55 96-151 6-60 (273)
270 1k1a_A B-cell lymphoma 3-encod 59.6 43 0.0015 30.4 9.6 17 170-186 18-34 (241)
271 1y8m_A FIS1; mitochondria, unk 59.3 74 0.0025 26.2 13.1 67 611-677 36-105 (144)
272 3eu9_A Huntingtin-interacting 59.2 41 0.0014 30.4 9.4 19 370-388 181-199 (240)
273 3esl_A Checkpoint serine/threo 57.9 61 0.0021 28.6 9.2 55 558-612 93-148 (202)
274 2qx5_A Nucleoporin NIC96; mRNA 57.6 2.1E+02 0.0071 30.9 15.8 20 339-361 549-568 (661)
275 1n11_A Ankyrin; clathrin, BAND 57.6 92 0.0031 31.5 12.6 17 371-387 250-266 (437)
276 3eiq_C Programmed cell death p 57.6 54 0.0018 32.2 9.9 26 124-149 56-81 (358)
277 1y8m_A FIS1; mitochondria, unk 57.3 81 0.0028 26.0 12.3 73 576-650 36-111 (144)
278 3kea_A K1L; tropism, ANK repea 57.3 1.3E+02 0.0043 28.3 13.1 44 98-145 39-82 (285)
279 3txn_A 26S proteasome regulato 56.8 1.6E+02 0.0055 29.3 21.1 91 58-148 105-207 (394)
280 4b4t_R RPN7, 26S proteasome re 56.2 92 0.0031 31.6 12.0 62 124-185 133-195 (429)
281 4a1g_A Mitotic checkpoint seri 53.2 1E+02 0.0034 25.8 9.5 60 633-696 84-144 (152)
282 2zu6_B Programmed cell death p 51.9 1.7E+02 0.0057 28.0 12.1 64 366-429 169-237 (307)
283 4g8k_A 2-5A-dependent ribonucl 51.0 1.7E+02 0.006 28.0 13.2 54 58-120 28-85 (337)
284 1k1a_A B-cell lymphoma 3-encod 48.5 81 0.0028 28.4 9.5 152 234-418 13-170 (241)
285 2nsz_A Programmed cell death p 47.3 1.1E+02 0.0036 24.8 8.6 64 125-190 10-75 (129)
286 3aji_A 26S proteasome non-ATPa 47.3 1.1E+02 0.0039 27.2 10.3 19 165-183 10-28 (231)
287 4b4t_S RPN3, 26S proteasome re 47.1 2E+02 0.0069 29.8 12.4 60 90-149 234-297 (523)
288 1n11_A Ankyrin; clathrin, BAND 46.2 1.5E+02 0.0052 29.8 12.1 296 59-417 18-330 (437)
289 3hra_A Ankyrin repeat family p 44.9 72 0.0024 27.8 8.2 14 133-146 13-26 (201)
290 3b7b_A Euchromatic histone-lys 44.5 1E+02 0.0034 27.7 9.4 12 316-327 160-171 (237)
291 4b4t_S RPN3, 26S proteasome re 44.1 2.1E+02 0.0073 29.6 12.1 135 42-183 221-366 (523)
292 2wvi_A Mitotic checkpoint seri 43.5 1.5E+02 0.0052 25.1 9.9 50 598-647 79-129 (164)
293 3eu9_A Huntingtin-interacting 43.3 1.2E+02 0.004 27.2 9.7 52 334-389 180-233 (240)
294 3b7b_A Euchromatic histone-lys 42.4 86 0.0029 28.2 8.6 113 302-423 117-235 (237)
295 2zu6_B Programmed cell death p 42.4 94 0.0032 29.7 8.7 65 294-362 167-236 (307)
296 3t8k_A Uncharacterized protein 41.6 1.5E+02 0.0052 25.5 9.6 104 232-363 40-149 (186)
297 2d2s_A Exocyst complex compone 41.4 1.1E+02 0.0037 27.9 8.6 25 648-672 90-114 (235)
298 4a1g_A Mitotic checkpoint seri 41.4 1.4E+02 0.0049 24.9 8.5 53 597-649 83-136 (152)
299 3eiq_C Programmed cell death p 39.8 2.8E+02 0.0095 27.1 14.4 203 50-261 52-287 (358)
300 2ion_A PDCD4, programmed cell 39.7 92 0.0031 26.1 7.3 65 124-190 11-77 (152)
301 2wvi_A Mitotic checkpoint seri 38.5 1.7E+02 0.0059 24.8 8.7 62 633-698 79-141 (164)
302 2r9g_A AAA ATPase, central reg 37.3 2.1E+02 0.0073 25.1 9.2 44 515-559 17-63 (204)
303 3bu8_A Telomeric repeat-bindin 36.8 2.3E+02 0.0077 25.2 10.2 21 166-186 122-142 (235)
304 1qsa_A Protein (soluble lytic 36.3 4.3E+02 0.015 28.2 32.8 116 172-321 228-347 (618)
305 2d2s_A Exocyst complex compone 36.0 2E+02 0.0067 26.2 9.4 32 224-255 88-119 (235)
306 2qx5_A Nucleoporin NIC96; mRNA 35.3 4.5E+02 0.016 28.3 18.9 85 588-676 452-565 (661)
307 4ets_A Ferric uptake regulatio 33.8 79 0.0027 26.8 6.1 71 139-210 14-86 (162)
308 3d9h_A CDNA FLJ77766, highly s 33.4 2.1E+02 0.0073 26.6 10.0 17 128-144 18-34 (285)
309 4aez_C MAD3, mitotic spindle c 33.2 1.4E+02 0.0048 26.8 7.7 42 632-673 132-174 (223)
310 2nsz_A Programmed cell death p 33.0 1.6E+02 0.0056 23.7 7.6 26 295-320 9-34 (129)
311 2fe3_A Peroxide operon regulat 32.4 1.3E+02 0.0043 24.9 7.0 62 604-666 12-73 (145)
312 3t8k_A Uncharacterized protein 30.6 75 0.0026 27.6 5.7 16 633-648 132-148 (186)
313 3l6a_A Eukaryotic translation 29.8 4E+02 0.014 26.1 11.2 22 127-148 17-38 (364)
314 3eyy_A Putative iron uptake re 29.5 1.2E+02 0.004 25.1 6.3 62 603-666 8-69 (145)
315 3bge_A Predicted ATPase; struc 29.4 2.3E+02 0.0079 24.8 8.0 44 515-558 10-56 (201)
316 2fu4_A Ferric uptake regulatio 29.3 1.4E+02 0.0048 21.4 6.2 59 605-664 8-67 (83)
317 2xig_A Ferric uptake regulatio 28.9 1.4E+02 0.0047 24.8 6.8 63 603-666 16-78 (150)
318 3jxi_A Vanilloid receptor-rela 28.5 1E+02 0.0036 28.2 6.7 55 59-113 9-72 (260)
319 3qil_A Clathrin heavy chain 1; 28.4 24 0.00081 28.0 1.6 71 62-144 16-86 (125)
320 3qil_A Clathrin heavy chain 1; 28.1 35 0.0012 27.0 2.5 71 17-109 16-86 (125)
321 3ctd_A Putative ATPase, AAA fa 28.1 3E+02 0.01 24.3 8.6 49 511-559 34-85 (213)
322 2rfa_A Transient receptor pote 27.8 3.1E+02 0.011 24.1 10.6 82 335-421 125-220 (232)
323 1mzb_A Ferric uptake regulatio 27.7 1.4E+02 0.0048 24.2 6.5 61 605-666 9-70 (136)
324 3aji_A 26S proteasome non-ATPa 26.9 3.2E+02 0.011 24.0 11.3 19 129-147 10-28 (231)
325 2fu4_A Ferric uptake regulatio 26.8 1.8E+02 0.006 20.9 7.4 59 535-594 8-67 (83)
326 2ion_A PDCD4, programmed cell 26.8 1.4E+02 0.0047 25.0 6.2 26 295-320 11-36 (152)
327 1mzb_A Ferric uptake regulatio 26.5 2.1E+02 0.0072 23.2 7.3 58 535-593 9-67 (136)
328 3hra_A Ankyrin repeat family p 25.9 1.2E+02 0.0042 26.2 6.4 34 330-363 140-173 (201)
329 2etb_A Transient receptor pote 25.6 1.4E+02 0.0047 27.2 7.0 28 59-86 6-33 (256)
330 2fe3_A Peroxide operon regulat 25.3 2.5E+02 0.0086 23.0 7.7 13 561-573 38-50 (145)
331 1oai_A Nuclear RNA export fact 25.2 54 0.0018 22.2 2.7 25 135-159 33-57 (59)
332 2w57_A Ferric uptake regulatio 25.2 1.5E+02 0.0051 24.6 6.3 63 603-666 6-69 (150)
333 3ygs_P Procaspase 9; apoptosis 24.8 1.7E+02 0.0057 22.1 5.9 38 377-415 51-88 (97)
334 1wgl_A TOLL-interacting protei 24.3 1.3E+02 0.0045 20.3 4.5 23 170-192 35-57 (59)
335 3bu8_A Telomeric repeat-bindin 23.8 2.9E+02 0.01 24.5 7.6 47 104-150 89-142 (235)
336 2w57_A Ferric uptake regulatio 23.6 2.4E+02 0.0083 23.3 7.3 35 559-593 32-66 (150)
337 3txn_A 26S proteasome regulato 23.6 5.5E+02 0.019 25.5 27.8 90 325-423 253-342 (394)
338 1qsa_A Protein (soluble lytic 23.2 7E+02 0.024 26.6 36.5 326 59-423 13-347 (618)
339 1bd8_A P19INK4D CDK4/6 inhibit 23.2 2E+02 0.0069 23.4 7.0 152 197-389 3-156 (156)
340 3d9h_A CDNA FLJ77766, highly s 22.7 2.5E+02 0.0084 26.2 8.2 106 303-417 132-241 (285)
341 2rfa_A Transient receptor pote 22.2 3.2E+02 0.011 24.0 8.7 152 485-647 8-184 (232)
342 3jxi_A Vanilloid receptor-rela 21.8 2.7E+02 0.0094 25.2 8.3 18 236-253 231-248 (260)
343 2f8y_A Notch homolog 1, transl 21.7 2.8E+02 0.0095 24.2 8.1 7 134-140 34-40 (223)
344 2keb_A DNA polymerase subunit 21.5 2.7E+02 0.0091 21.1 6.7 29 564-592 29-57 (101)
345 2ijq_A Hypothetical protein; s 21.4 1.7E+02 0.0058 24.7 5.7 52 64-115 44-103 (161)
346 2xig_A Ferric uptake regulatio 20.3 1.9E+02 0.0064 24.0 5.9 47 163-209 31-77 (150)
347 3eyy_A Putative iron uptake re 20.1 1.6E+02 0.0054 24.3 5.4 57 151-209 12-68 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-37 Score=345.01 Aligned_cols=500 Identities=12% Similarity=-0.026 Sum_probs=291.7
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004273 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.|....+...+..+. .++...|+.++..|.+.|+++.|+.+|++|... .|+..++..++.+|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344444444444332 244556777777777777777777777777743 45666777777777777777777777
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCC
Q 004273 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
|+.+.. .+++..+++.++.+|.+.|++++|.++|+++.. +.. ...++...+ ....+.+
T Consensus 140 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~----------~~~~~~~ 197 (597)
T 2xpi_A 140 LTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLL----------MQDGGIK 197 (597)
T ss_dssp HHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC------------------------CCCSSCC
T ss_pred HHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----ccccccccc----------ccccccc
Confidence 776642 245666777777777777777777777764211 110 000000000 0001123
Q ss_pred CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH
Q 004273 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
.+..+|+.++.+|.+.|++++|.++|++|.+. .|+.. ..|..+...+.
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~------------------------------~~~~~l~~~~~ 245 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCY------------------------------EAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------------------------------HHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cchhh------------------------------HHHHHHHHhhc
Confidence 34555555555555555555555555555552 23221 23444443333
Q ss_pred ccCCHHHHHH--H-HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHH
Q 004273 305 RTQNSGLAEQ--L-MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381 (764)
Q Consensus 305 ~~g~~~~a~~--~-~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (764)
..+..+.+.. + +..+...+..++..+|+.++..|.+.|++++|.++|+++.+. .++..++..++.+|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 3322222111 1 334443333334444555555555555555555555555443 2455555555566666666666
Q ss_pred HHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHH
Q 004273 382 AEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459 (764)
Q Consensus 382 A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 459 (764)
|..+|+++.... +..+|+.++.+|.+.|++++|..+|+++... .|
T Consensus 324 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-------------------------------- 370 (597)
T 2xpi_A 324 VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HP-------------------------------- 370 (597)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT--------------------------------
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Cc--------------------------------
Confidence 666665554322 5555666666666666666666666666541 11
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 004273 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537 (764)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~ 537 (764)
.+..+++.++..|.+.|++++|.+.|+++. .+.+..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 371 ---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 371 ---------------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp ---------------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122333444555566666666666665431 233456777777777788888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC
Q 004273 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE----GIPHD 613 (764)
Q Consensus 538 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~ 613 (764)
.+ +.+..+|..+..+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 54 3466777777778888888888888887777653 336677778888888888888888888777654 55676
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 614 --VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 614 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.++++++..
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 6677888888888888888888888777643 23566777777788888888888888777654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-37 Score=341.30 Aligned_cols=497 Identities=11% Similarity=-0.054 Sum_probs=357.6
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 004273 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+.+... .++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 35556666666666666666666666666432 345556666666666666666666666655432 4455555555
Q ss_pred HHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCC
Q 004273 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
+.+|.+.|++++|.++|+++... +.. ...+.+.++. ..+..++.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~~~~~-----------~~~~~~~~----------------- 200 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPF---RKD-----EKNANKLLMQ-----------DGGIKLEA----------------- 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTT---C---------------CC-----------CSSCCHHH-----------------
T ss_pred HHHHHHHhhHHHHHHHHhccCCc---ccc-----cccccccccc-----------ccccchhH-----------------
Confidence 55555555555555555532110 000 0000000000 00111122
Q ss_pred CccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhH--HHHH-HHHHH
Q 004273 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRN--GMEV-LKIMQ 355 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~--a~~~-~~~m~ 355 (764)
.+|+.++.+|.+.|++++|.++|++|.+.+ |+. ..+..+...+...+.... +..+ +..+.
T Consensus 201 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 264 (597)
T 2xpi_A 201 --------------SMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264 (597)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHH
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccc
Confidence 699999999999999999999999999864 544 445555544433322222 2222 66667
Q ss_pred HCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHH
Q 004273 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~ 433 (764)
..+..+...+|+.++..|.+.|++++|.++|+++...+ +..+|+.++.+|.+.|++++|+.+|+++.+ + |
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~------ 336 (597)
T 2xpi_A 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--P------ 336 (597)
T ss_dssp GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------
T ss_pred cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--c------
Confidence 77766677788888999999999999999999997743 889999999999999999999999999987 3 2
Q ss_pred HHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc--CCCCChhh
Q 004273 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPT 511 (764)
Q Consensus 434 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~ 511 (764)
.+..+++.++..|.+.|++++|..+|+.+ ..+.+..+
T Consensus 337 -----------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
T 2xpi_A 337 -----------------------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375 (597)
T ss_dssp -----------------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHH
Confidence 12333555677788889999999999875 23456789
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004273 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..+|+.++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 9999999999999999999999998853 3468899999999999999999999999999874 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HhhHHHHHHHHHhcCCh
Q 004273 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPD--PSTCHFVFSGYVNCGFH 665 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~ 665 (764)
.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 999999999999998753 457899999999999999999999999999875 66888 67999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHH-HhhhcchhhHHHHhhhhh
Q 004273 666 NSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQ-FCEDSNENLAFTAALLQL 729 (764)
Q Consensus 666 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~a~~~~l~~~ 729 (764)
++|.++++++.... |. ...........+...++.+.+...++ .+..+++.......|.++
T Consensus 533 ~~A~~~~~~~~~~~--p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 533 DAAIDALNQGLLLS--TN--DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHS--SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999999887654 22 22223334444555666665555544 445566655545544443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.3e-29 Score=270.05 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=175.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCC
Q 004273 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475 (764)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (764)
.++.+|.+|++.|++++|+++|++|.+ |++||..||+++|.+|++.+...+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------------------------
Confidence 478889999999999999999999999 9999999999999999876542111
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004273 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 555 (764)
.+.+..++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 81 --------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 81 --------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp --------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred --------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 123446788999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004273 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 556 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004273 636 IIEQMHQNKVQPDPSTCHFVFSGYVNC 662 (764)
Q Consensus 636 ~~~~m~~~~~~p~~~~~~~ll~~~~~~ 662 (764)
++++|.+.|..|+..||+.++..|...
T Consensus 197 ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 197 TLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999888763
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.2e-28 Score=258.38 Aligned_cols=184 Identities=16% Similarity=0.242 Sum_probs=173.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hhHHHHHHHHHHHCCCCCCH
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC---------FKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~p~~ 579 (764)
...++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999997654 68899999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004273 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 659 (764)
.+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhhHH
Q 004273 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRS 692 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 692 (764)
++.|++++|.+++++|+..+..|...++..+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999999999999999999887666544333
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3e-23 Score=217.92 Aligned_cols=284 Identities=10% Similarity=-0.007 Sum_probs=137.2
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.|+++.|.+.++.+.+.. +.+...+..+...+...|++++|..+++...+.. +.+..+|..+..+|.+.|++++|+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 3445555555555544442 2233344444444455555555555555444322 233345555555555555555555
Q ss_pred HHHHHHHhcCCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004273 179 LCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 179 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 257 (764)
..|+.+.+. .| +..+|..+..++...|++++|.+.++.+.+..+.+...+..+...+...|++++|.+.|+++.+
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-- 163 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-- 163 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--
Confidence 555555443 22 2234455555555555555555555555544444445555555555666666666666666655
Q ss_pred hcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 004273 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337 (764)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 337 (764)
..|+. ..+|+.+...+...|++++|...|+++.+.+ +.+...+..+...
T Consensus 164 ~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 164 TQPNF------------------------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp HCTTC------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 23332 1355666666666666666666666665542 1123344455555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHH
Q 004273 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 415 (764)
+...|++++|...+++..+.... +..++..+...|.+.|++++|...|+++.... ++.+|..+...+.+.|++++|.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555543322 23334444444444444444444444433321 2223344444444444444444
Q ss_pred HHHHHH
Q 004273 416 KIFAKM 421 (764)
Q Consensus 416 ~l~~~m 421 (764)
..|+++
T Consensus 292 ~~~~~a 297 (388)
T 1w3b_A 292 DCYNTA 297 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.5e-23 Score=217.36 Aligned_cols=375 Identities=10% Similarity=0.025 Sum_probs=221.9
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKN-EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.+.+.|++++|+..++.+.+. .|+ ...+..+...+...|++++|...++...+..+.+..+|..+..+|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 344555555555555555543 222 22333334444555555555555555555555555666666666666666666
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004273 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 325 (764)
|...|+++.+ ..|+. ..+|..+..++.+.|++++|.+.|+++.+. .
T Consensus 86 A~~~~~~al~--~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 131 (388)
T 1w3b_A 86 AIEHYRHALR--LKPDF------------------------------IDGYINLAAALVAAGDMEGAVQAYVSALQY--N 131 (388)
T ss_dssp HHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHH--cCcch------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 6666666655 33333 135556666666666666666666666553 2
Q ss_pred CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHH
Q 004273 326 PSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFL 402 (764)
Q Consensus 326 p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li 402 (764)
|+.. .+..+...+...|++++|..+|+++.+.... +..++..+...|.+.|++++|...|+++.... +...|..+.
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 210 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3333 2334444555556666666666555554322 23444444444555555555554444443321 233344444
Q ss_pred HHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHH
Q 004273 403 AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482 (764)
Q Consensus 403 ~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (764)
..+...|++++|+..|++... .
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~-~--------------------------------------------------------- 232 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALS-L--------------------------------------------------------- 232 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHH-H---------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHh-h---------------------------------------------------------
Confidence 555555555555555544432 0
Q ss_pred HHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 004273 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562 (764)
Q Consensus 483 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 562 (764)
.+.+..+|..+...+...|++++|+..|+++.+.+ +.+..+|..+..++.+.|++++
T Consensus 233 ----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 233 ----------------------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp ----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred ----------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 12234566777777778888888888888887753 2346677778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 563 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
|...|+++.+.. +.+..+++.+...+.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|...++++.+
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888887753 4567778888888888888888888888887532 34567788888888888888888888888875
Q ss_pred CCCCCC-HhhHHHHHHHHHhcC
Q 004273 643 NKVQPD-PSTCHFVFSGYVNCG 663 (764)
Q Consensus 643 ~~~~p~-~~~~~~ll~~~~~~g 663 (764)
..|+ ...|..+...+...|
T Consensus 368 --~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 368 --ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp --TCTTCHHHHHHHHHHHHHTC
T ss_pred --hCCCCHHHHHhHHHHHHHcc
Confidence 4554 334444444444433
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4e-20 Score=202.08 Aligned_cols=340 Identities=11% Similarity=-0.075 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
...+......+.+.|++++|+..|+++...+ |+...|..+..++...|+++.|++.++.+.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4556666788899999999999999999876 688889999999999999999999999999875 5567789999999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|.+.|++++|...|+++.+.. +++......++..+.+......+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999987543 345556666666666555555555555444443333333322221111111222222
Q ss_pred HHHHHHHHHcc----------CCCCHHhHHHHHHHhhc---cCCHHHHHHHHHHHHH-----hhhcccchhccccccccc
Q 004273 212 VHEIWEDYIKH----------YSLSIFSLRKFVWSFTR---LRDLKSAYETLQHMVA-----LAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 212 a~~~~~~~~~~----------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~~~~~~~ 273 (764)
...+...+... .+.+...+..+...+.. .|+++.|...|+++.+ ....|+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------- 231 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK--------- 231 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH---------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc---------
Confidence 22222111111 12234455555555444 8999999999999987 311222200
Q ss_pred ccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004273 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 353 (764)
.......+|..+...+...|++++|...|+++.+.. |+..++..+...+...|++++|...++.
T Consensus 232 --------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 232 --------------LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred --------------cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000002588889999999999999999999998864 4466778888888899999999999999
Q ss_pred HHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHh
Q 004273 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMR 422 (764)
Q Consensus 354 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 422 (764)
+.+.... +..++..+...|...|++++|...|+...... +...|..+...+...|++++|+..|+++.
T Consensus 296 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 296 ALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp HHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876543 45556666666666666666666666665432 44455555555666666666666555544
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.1e-20 Score=200.60 Aligned_cols=250 Identities=14% Similarity=0.036 Sum_probs=185.9
Q ss_pred cCCHHHHHHHHHHHhh-----C----------C-CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHh
Q 004273 376 ALELDLAEALLDQISR-----C----------T-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439 (764)
Q Consensus 376 ~g~~~~A~~~~~~~~~-----~----------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~ 439 (764)
.|++++|...|+++.. . + +..+|..+...+...|++++|...|+++.+ ..|+...+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~------- 273 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSY------- 273 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HCCCHHHH-------
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCccHHHH-------
Confidence 6788888888877766 2 1 445677788888899999999999988876 12333333
Q ss_pred cCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc--CCCCChhhHHHHHH
Q 004273 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLH 517 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~ 517 (764)
..+...|...|++++|...++.. ..+.+...|..+..
T Consensus 274 -----------------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 274 -----------------------------------------IYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp -----------------------------------------HHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 33444555666666666666553 12335668888888
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004273 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597 (764)
Q Consensus 518 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 597 (764)
.+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999988764 2356778888888889999999999998888753 3356778888899999999999
Q ss_pred HHHHHHHHHHCC-CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 004273 598 ALNLLDLVSLEG-IPHD----VLLYNTILKKACE---KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 598 A~~~~~~m~~~~-~~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 669 (764)
|...++++.... -.++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 999998887531 1122 3478888888888 899999999999988632 234566677778999999999999
Q ss_pred HHHHHHHH
Q 004273 670 EALQVLSM 677 (764)
Q Consensus 670 ~~~~~~~~ 677 (764)
+.+++...
T Consensus 470 ~~~~~a~~ 477 (514)
T 2gw1_A 470 TLFEESAD 477 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=2.2e-19 Score=192.50 Aligned_cols=337 Identities=10% Similarity=-0.040 Sum_probs=274.2
Q ss_pred ccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH
Q 004273 43 TMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN 122 (764)
Q Consensus 43 ~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 122 (764)
.+...|+ ....+..+...+...|++++|+.+|+.+.... +.+...+..+..++...|+++.|.+.|+++.+.+ +.+.
T Consensus 18 ~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 94 (450)
T 2y4t_A 18 LYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFT 94 (450)
T ss_dssp -----CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcH
Confidence 3444455 35566777888999999999999999998865 4567789999999999999999999999999985 5567
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-h---hhhHHH------------HHHHhccCCHHHHHHHHHHHHh
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-L---PVYNSF------------LGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..+..+...|.+.|++++|...|+++.+. .|+ . ..+..+ ...+.+.|++++|+..|+.+.+
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999754 343 3 455555 3448899999999999999988
Q ss_pred cCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcc
Q 004273 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINR 266 (764)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 266 (764)
..+ .+..++..+...+...|++++|.+.++.+.+..+.+..++..+..+|...|++++|...|+++.+ ..|+..
T Consensus 172 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~--- 245 (450)
T 2y4t_A 172 VCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHK--- 245 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH---
T ss_pred hCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChH---
Confidence 643 37788899999999999999999999999998888999999999999999999999999999987 455441
Q ss_pred cccccccccccCCCccCCcccchhhhHhhHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCC-----cc
Q 004273 267 TSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV------------IHACGRTQNSGLAEQLMLQMQSLGLQPS-----SH 329 (764)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~ 329 (764)
..+..+ ...+.+.|++++|...|+++.+. .|+ ..
T Consensus 246 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 296 (450)
T 2y4t_A 246 ---------------------------RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVR 296 (450)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 233333 88899999999999999999885 455 34
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHH---
Q 004273 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAA--- 404 (764)
Q Consensus 330 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~--- 404 (764)
.+..+...+.+.|++++|...++.+.+.... +..++..+..+|...|++++|...|+.+.... +...+..+..+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 6788888999999999999999999886533 67889999999999999999999999997763 44455555422
Q ss_pred ---------HhcCC-----CHHHHHHHHHHH
Q 004273 405 ---------CDTMD-----KPERAIKIFAKM 421 (764)
Q Consensus 405 ---------~~~~g-----~~~~a~~l~~~m 421 (764)
|...| +.+++.+.|+++
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 33334 566777777763
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=7.5e-19 Score=193.14 Aligned_cols=333 Identities=9% Similarity=-0.087 Sum_probs=232.5
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
....+......+.+.|++++|+..|+++.... +.++..+..+..++...|+++.|++.++++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45567777888999999999999999999876 5577789999999999999999999999999885 557788999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHH
Q 004273 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR------MVGKNEVTYTELLKLAV 204 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~ 204 (764)
.|...|++++|...|+.+. . .|+ ..+..+..+...+....|...++.+... ...|+... +..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-L---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-c---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHH
Confidence 9999999999999997542 2 233 2233344556667778899999998654 22333333 33344
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc--------CCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL--------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
...+.+.+...+.......+........+...+... |+++.|..+|+++.+ ..|+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~~~----------- 238 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDDPL----------- 238 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH-----------
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--HCCCcchh-----------
Confidence 455555444433332222222233444444444433 478999999999887 34432100
Q ss_pred cCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
......+|..+...+...|++++|...|++..+. .|+..++..+...+...|++++|...++.+.+
T Consensus 239 ------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 239 ------------RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 0000136777788889999999999999999885 46667788888888899999999999999888
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.... +..++..+...|...|++++|...|+...... +...|..+...+...|++++|...|++..+
T Consensus 305 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 305 LNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6544 56677777788888888888888887776532 556677777777777777777777776654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=3.4e-19 Score=191.05 Aligned_cols=321 Identities=9% Similarity=-0.023 Sum_probs=259.7
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
..+...|..+.... +.+...+..+...+.+.|+++.|+.+|+.+.+.. +.+..++..+...|...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444555555443 4556778899999999999999999999999874 557889999999999999999999999999
Q ss_pred hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHH------------HHHHhccChhHH
Q 004273 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELL------------KLAVWQKNLSAV 212 (764)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll------------~~~~~~~~~~~a 212 (764)
.+.. +.+..++..+...|.+.|++++|...|+.+.+.. |+. .++..+. ..+...|++++|
T Consensus 87 l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 87 IQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7654 3456789999999999999999999999999863 443 4555543 348899999999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
...++.+.+..+.+..++..+..+|.+.|++++|.+.|+++.+. .|+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~------------------------------ 210 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDN------------------------------ 210 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSC------------------------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC------------------------------
Confidence 99999999988889999999999999999999999999999874 3433
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc-HHHH------------HHHHHhcCChhHHHHHHHHHHHCCC
Q 004273 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGF------------IRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~ 359 (764)
..+|..+...|...|++++|...|+++... .|+... +..+ ...+...|++++|...|+.+.+...
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 158999999999999999999999999875 455443 4333 6788999999999999999998543
Q ss_pred CCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-C-CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHh
Q 004273 360 KPQ----DSTIATLSVECSKALELDLAEALLDQISRC-T-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431 (764)
Q Consensus 360 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t 431 (764)
. + ...+..+...+.+.|++++|...++.+... + +..+|..+..+|...|++++|...|++..+ ..|+...
T Consensus 289 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~ 364 (450)
T 2y4t_A 289 S-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-HNENDQQ 364 (450)
T ss_dssp S-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSSCHH
T ss_pred c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCcchHH
Confidence 3 2 346788899999999999999999998653 2 678899999999999999999999999987 4455433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.5e-18 Score=190.80 Aligned_cols=430 Identities=10% Similarity=-0.015 Sum_probs=259.7
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+.+.|+++.|++.|+++.+.+ +.++..+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 3457778888889999999999999999875 5578889999999999999999999999987654 345678888999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccC---CCCHHhHHHHHHHhhccCCH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY---SLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 243 (764)
.+.+.|++++|+..|+.+ .. .|+.. ...+..+...+....+...++.+.+.. .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999643 22 23322 122334455555677888888876531 11111122233334445555
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHc--------cCCHHHHHHH
Q 004273 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR--------TQNSGLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~g~~~~a~~~ 315 (764)
+.+...+..... .+. .. ......+...+.. .|++++|..+
T Consensus 177 ~~~~~~~~~~~~----~~~-------------------------~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 177 HLEVSSVNTSSN----YDT-------------------------AY---ALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp HHHHHTSCCCCS----SCS-------------------------SH---HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc----ccc-------------------------HH---HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444333222111 110 00 0122223222222 2467888888
Q ss_pred HHHHHHCCCCCCc--------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004273 316 MLQMQSLGLQPSS--------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 316 ~~~m~~~g~~p~~--------~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 387 (764)
|+++.+.. |+. .++..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...|+
T Consensus 225 ~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 225 YHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88887643 332 234444555666677777777777776643 234455555555555666666666655
Q ss_pred HHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHH
Q 004273 388 QISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465 (764)
Q Consensus 388 ~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (764)
.+.... +..+|..+...+...|++++|+..|++..+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------------ 338 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------------------------------ 338 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------------------------------
Confidence 554321 334455555555555555555555554433
Q ss_pred HHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 004273 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545 (764)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 545 (764)
..+.+...|..+...+...|++++|+..|+++.+.. +.+..
T Consensus 339 --------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 379 (537)
T 3fp2_A 339 --------------------------------------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPE 379 (537)
T ss_dssp --------------------------------------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTH
T ss_pred --------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 012233456666677777777777777777776653 23455
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCC
Q 004273 546 TYNIMIDCCSIIRCFKSASALVSMMVRDG-----FYPQTMTYTALIKILLDY----------GDFDEALNLLDLVSLEGI 610 (764)
Q Consensus 546 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~ 610 (764)
.+..+...+...|++++|...|+.+.+.. .......+..+...|.+. |++++|...++++.+..
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 66677777777777777777777766532 111222233445566666 77888888888777542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+.+...+..+...|.+.|++++|.+.|++..+
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566777777778888888888888887775
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.1e-13 Score=155.77 Aligned_cols=552 Identities=10% Similarity=0.029 Sum_probs=272.7
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCC--CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHS--LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 135 (764)
.+.+|+..|.+.+|+++++++...+.+ -+...-+.++.+..+. +.....++.++.... ....+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhC
Confidence 455566666677777777666633210 1223344444444444 445555555444321 122345556666
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004273 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
|.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+-+++...|++++|.+.
T Consensus 1063 glyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 677777666665421 1112222322 456666666666543 1355666666666666677666666
Q ss_pred HHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhh
Q 004273 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
|.+. .|...|..++.++.+.|++++|.+.|....+.. ++. ..
T Consensus 1128 YiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~-------------------------------~I 1169 (1630)
T 1xi4_A 1128 YIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES-------------------------------YV 1169 (1630)
T ss_pred HHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc-------------------------------cc
Confidence 6542 455666666666666677777766666655522 111 12
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHh
Q 004273 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 296 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 375 (764)
.+.++.+|++.++++....+. + .|+...|..+-..|...|++++|..+|... ..|..+..+|.+
T Consensus 1170 dt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 334666666666665422221 1 234445555666666666666666666663 356666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhh
Q 004273 376 ALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455 (764)
Q Consensus 376 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 455 (764)
.|+++.|.+.++... +..+|..+-.+|...|++..|......+. .+...+..++..+.+.|.+.++-..++.
T Consensus 1234 Lge~q~AIEaarKA~---n~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE~- 1305 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEA- 1305 (1630)
T ss_pred hCCHHHHHHHHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 666666666666553 55666666666666666666655443321 2333333444444444444333222211
Q ss_pred hhHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHhc--cCcHHHHHHHHHhcCCCC-------ChhhHHHHHHHHHHcCCh
Q 004273 456 DSAKRINAIEMDMARNNIQH-SHISMKNLLKALGA--EGMIRELIQYFCDSKTPL-------GTPTYNTVLHSLVEAQES 525 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~ 525 (764)
.. ++.+ ....|+.|...|++ -+++.++.+.|.....-| +...|.-++..|.+.|++
T Consensus 1306 ------------aL--~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1306 ------------AL--GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred ------------Hh--ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 11 1111 12233333333333 334445555554432221 233455555555555665
Q ss_pred hHHHHHH-------------HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004273 526 HRAMEIF-------------KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 526 ~~A~~l~-------------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 592 (764)
+.|.... .+.... ..|...|...+.-|. +....++.-+.......+. ++..+..+.+.
T Consensus 1372 dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1372 DNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKV 1442 (1630)
T ss_pred HHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCC-----hHHHHHHHHHc
Confidence 5555211 111111 223333444443333 1111222222111111111 23344445555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHCCCCCCHhhHHHHHH-HH
Q 004273 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI------------EFIIEQMHQNKVQPDPSTCHFVFS-GY 659 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a------------~~~~~~m~~~~~~p~~~~~~~ll~-~~ 659 (764)
|++.-+..+++...... +..+-..|...+....+++.- ..+..++.++ +..-+..+.. .|
T Consensus 1443 ~~l~lik~yl~~vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly 1515 (1630)
T 1xi4_A 1443 KQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLF 1515 (1630)
T ss_pred CChHHhHHHHHHHHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHH
Confidence 55555555555444221 222223333333333333211 1122222211 1122233333 55
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHHHhhhcchhhHHHHhhhhhhhhhccC
Q 004273 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVG 736 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~l~~~~~~~~~~ 736 (764)
.+.|+|..|.++.+.- + .+ ...+.....+++.+...+++.++-..+++-.++..|..+..+..|.
T Consensus 1516 ~~n~~~~~ai~l~k~d---~------l~---~dAm~~a~~S~d~e~~e~ll~~F~~~~~~E~f~a~Ly~cy~l~~pd 1580 (1630)
T 1xi4_A 1516 KGNNRWKQSVELCKKD---S------LY---KDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPD 1580 (1630)
T ss_pred HhcCcHHHHHHHHHhc---c------CH---HHHHHHHHHcCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCch
Confidence 6679999999988732 1 22 2245555677888888888888877777777777777766665553
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=2.8e-16 Score=162.46 Aligned_cols=311 Identities=9% Similarity=-0.076 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+..+...+...|++++|+..|+++.+.. +.++..+..+..++...|+++.|...++++.+.. +.+...+..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 455666788999999999999999998876 4567788889999999999999999999999874 44678899999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC----ChhhhHHH------------HHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYP----ILPVYNSF------------LGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
...|++++|...|++..+. .| +...+..+ ...+...|++++|+..|+.+.+..+ .+...+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 9999999999999998753 34 33344444 5788899999999999999988643 367788
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|...|++..+ ..|+..........+
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHH----
Confidence 88999999999999999999999998888999999999999999999999999999987 444431100000000
Q ss_pred cCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHHhcCChhHHHHHH
Q 004273 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-----TYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----t~~~li~~~~~~~~~~~a~~~~ 351 (764)
.. ......+...+.+.|++++|...+++..+.. |+.. .+..+...+...|++++|...+
T Consensus 232 ------------~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 232 ------------KK--LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp ------------HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------HH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 00 0011133566788888888888888887753 3432 2334556777888888888888
Q ss_pred HHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004273 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 352 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 392 (764)
+...+.... +..++..+...|...|++++|...|+.....
T Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888776432 5566777777777777777777777777654
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.4e-13 Score=155.04 Aligned_cols=555 Identities=8% Similarity=0.023 Sum_probs=311.5
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhh------------hccccCCchhhhHHHH--------HHHHHHHHhcCCc
Q 004273 9 RFQLIADSFCKSKFHKHERRNVANKLELSRT------------LTTTMGLNEESISKAT--------QMQIVDALCRGER 68 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~------------~~~~~~~~p~~~~~~~--------~~~i~~~~~~~~~ 68 (764)
..+.+...|...|.+.+|+ .+++++....+ ..+.++.++....... ..+...+...|.+
T Consensus 987 eVs~~vKaf~~aglp~Eai-eLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELI-ELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHH-HHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 4566778899999999999 77776632211 0001111111000000 1123345556777
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+..++.+.|++++|++.|.+.
T Consensus 1066 EEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 777777776421 1112233332 445677777766644 24567778888888888888888887643
Q ss_pred hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHH
Q 004273 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF 228 (764)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 228 (764)
-|...|..++..+.+.|++++|.+.|...++.. +++...+.+..+|++.++++....+. ..++..
T Consensus 1132 -------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI------~~~n~a 1196 (1630)
T 1xi4_A 1132 -------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI------NGPNNA 1196 (1630)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH------hCCCHH
Confidence 245577778888888888888888887766653 33333334777777777777544442 234555
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004273 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
.|..+...|...|++++|..+|.... .|..+..++.+.|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~----------------------------------------ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS----------------------------------------NFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh----------------------------------------HHHHHHHHHHHhCC
Confidence 66677888888888888888888752 67788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004273 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 388 (764)
++.|.+.+++. -+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.
T Consensus 1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888775 3567788888888888887777765543 333556677888888888888888888877
Q ss_pred HhhCC--CCcchHHHHHHHhcC--CCHHHHHHHHHHHhhccCC------CHHhHHHHHHHhcCCCCchhhchhhhhhhhH
Q 004273 389 ISRCT--NPKPFSAFLAACDTM--DKPERAIKIFAKMRQKLRP------DIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458 (764)
Q Consensus 389 ~~~~~--~~~~~~~li~~~~~~--g~~~~a~~l~~~m~~~~~p------~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
..... ....|+-|...|++. ++..+++++|..-. ++.| +...|.-+.-.|.+.+.++.|....-.-...
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri-ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV-NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 75543 444566666666553 34555555555322 2222 2333444444444444443332111100000
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh-cCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 004273 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537 (764)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~ 537 (764)
..-+..+.+.. .-..+...|...+..|.... ..++.-+.. ..+ ..-++-.+..+.+.++..-+...+.....
T Consensus 1385 a~~~~~Fk~~i--~kv~n~elyykai~Fyl~~~--P~~lndLl~~l~~---rlD~~R~V~l~~~~~~l~lik~yl~~vq~ 1457 (1630)
T 1xi4_A 1385 AWKEGQFKDII--TKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSP---RLDHTRAVNYFSKVKQLPLVKPYLRSVQN 1457 (1630)
T ss_pred hhhhHHHHHHh--cccccHHHHHHHHHHHHhhC--hHHHHHHHHHhhh---cCChHHHHHHHHHcCChHHhHHHHHHHHH
Confidence 00111111111 11234455555555554322 111111100 000 00112233333444444444444444333
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhH------------HHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHH
Q 004273 538 CGIPPNAATYNIMIDCCSIIRCFKS------------ASALVSMMVRDGFYPQTMTYTALI-KILLDYGDFDEALNLLDL 604 (764)
Q Consensus 538 ~g~~p~~~t~~~ll~~~~~~~~~~~------------a~~~~~~~~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~ 604 (764)
.+. ...=..+...|....+++. ...+-.++.++ +..-+..+. ..|.+.|++..|.+++.+
T Consensus 1458 ~n~---~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~ 1530 (1630)
T 1xi4_A 1458 HNN---KSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKK 1530 (1630)
T ss_pred hcc---hhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 221 1111122222222222211 12222222222 122233333 345566999999999987
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 004273 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 605 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
- | .|.-.|....++|+.+.+++++.-..+. -+...|...+-.|...=+.+.++++
T Consensus 1531 d---~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1531 D---S------LYKDAMQYASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred c---c------CHHHHHHHHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHHH
Confidence 3 2 5666788899999999999999999864 4566787888888888888877664
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=7.3e-16 Score=159.38 Aligned_cols=305 Identities=8% Similarity=-0.036 Sum_probs=251.8
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..+..+...+...|+++.|...|+.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...|..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHH
Confidence 4567778888899999999999999999875 4567899999999999999999999999997653 235678999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCC--CChhhHHHH------------HHHHHhccChhHHHHHHHHHHccCCCCHHhHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTEL------------LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
.+.+.|++++|...|+...+..+. .+...+..+ ...+...|++++|.+.++.+.+..+.+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999886320 133344443 467889999999999999999988889999999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHH
Q 004273 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA 312 (764)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 312 (764)
+..++...|+++.|...++++.+ ..|+. ..+|..+...+...|++++|
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~------------------------------~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASK--LKSDN------------------------------TEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--TCSCC------------------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999987 34443 15888999999999999999
Q ss_pred HHHHHHHHHCCCCCCcc-cHH------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCch----hHHHHHHHHHHh
Q 004273 313 EQLMLQMQSLGLQPSSH-TYD------------GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD----STIATLSVECSK 375 (764)
Q Consensus 313 ~~~~~~m~~~g~~p~~~-t~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~ 375 (764)
...|++..+.. |+.. ++. .+...+.+.|++++|...++.+.+.... +. ..+..+...|..
T Consensus 208 ~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 208 LSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 99999998753 4432 222 2255688999999999999999986544 22 224457789999
Q ss_pred cCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHH
Q 004273 376 ALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIR 430 (764)
Q Consensus 376 ~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~ 430 (764)
.|++++|...++...... +..+|..+...|.+.|++++|...|++..+ ..|+..
T Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~p~~~ 340 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-HNENDQ 340 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTCH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCh
Confidence 999999999999987643 667889999999999999999999999987 445533
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=187.85 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=128.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004273 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKT---CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l 585 (764)
..+||++|++|++.|+.++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||+.|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45999999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHH
Q 004273 586 IKILLDYGD-FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD------PSTCHFVFSG 658 (764)
Q Consensus 586 i~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~ 658 (764)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999999877655 344444444 3466665 4444556667
Q ss_pred HHhcC
Q 004273 659 YVNCG 663 (764)
Q Consensus 659 ~~~~g 663 (764)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77766
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=6.1e-16 Score=157.90 Aligned_cols=284 Identities=8% Similarity=-0.052 Sum_probs=148.7
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
.+...+..+...+...|+++.|.++++.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 334445555555555556666666665555543 2333444445555555566666666655554432 1233455555
Q ss_pred HHHHhccC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCH
Q 004273 165 LGACAKLH-SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 165 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
...+...| ++++|...|+...+... .+...|..+...+...|++++|.+.++.+.+..+.+...+..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 55555555 55666666655554421 13444555555555566666666666655555455555555566666666666
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004273 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 323 (764)
+.|...|+++.+ ..|+. ...|..+...+...|++++|...|++..+..
T Consensus 176 ~~A~~~~~~al~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 176 KLAERFFSQALS--IAPED------------------------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHT--TCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCC------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 666666666555 22222 1355556666666666666666666555421
Q ss_pred --------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--
Q 004273 324 --------LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-- 393 (764)
Q Consensus 324 --------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 393 (764)
...+..++..+...+...|++++|...++...+.... +...+..+...|.+.|++++|...|++.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 0112334555555555666666666666655554322 34445555555555555555555555554432
Q ss_pred CCcchHHHHHHH
Q 004273 394 NPKPFSAFLAAC 405 (764)
Q Consensus 394 ~~~~~~~li~~~ 405 (764)
+...+..+..++
T Consensus 303 ~~~~~~~l~~~~ 314 (330)
T 3hym_B 303 DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 333344444444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.2e-15 Score=155.69 Aligned_cols=297 Identities=8% Similarity=-0.091 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+++|+++.+.. +.+...+..++.++...|+++.|..+++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 345556777888999999999999998876 4556667778888888999999999999999874 45678899999999
Q ss_pred HccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 133 CKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 133 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
...| ++++|...|++..+.. +.+...|..+...+...|++++|+..|+...+.... +..++..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 9999 9999999999987543 335668999999999999999999999999886433 45677778889999999999
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|.+.++...+..+.+..++..+...+...|++++|...|+++.+.......... +...
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------~~~~- 235 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---------------------VDKW- 235 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---------------------TTTC-
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---------------------ccHH-
Confidence 999999999988889999999999999999999999999999874321110000 0000
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004273 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..
T Consensus 236 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 312 (330)
T 3hym_B 236 -EPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGH 312 (330)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHH
Confidence 1488999999999999999999999998864 235667888999999999999999999999876543 5666677777
Q ss_pred HH-HhcCCH
Q 004273 372 EC-SKALEL 379 (764)
Q Consensus 372 ~~-~~~g~~ 379 (764)
++ ...|+.
T Consensus 313 ~~~~~~g~~ 321 (330)
T 3hym_B 313 CIEMYIGDS 321 (330)
T ss_dssp HHHTTTTC-
T ss_pred HHHHHhCch
Confidence 66 344544
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=1.4e-13 Score=148.63 Aligned_cols=284 Identities=8% Similarity=-0.029 Sum_probs=148.6
Q ss_pred hHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchhHH
Q 004273 295 SFSDVIHACGR----TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 295 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 366 (764)
.+..|...|.. .+++++|...|++..+.| +...+..+-..+.. .+++++|...|+...+.| +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44444444444 455555555555555543 33334444444443 455556666665555543 34444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcchHHHHHHHhc----CCCHHHHHHHHHHHhh-ccCCCHHhHHHHHH
Q 004273 367 ATLSVECSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ-KLRPDIRTYELLFS 437 (764)
Q Consensus 367 ~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~ 437 (764)
..|...|.. .++.++|...|+...+.+++..+..+...|.. .+++++|...|++..+ +. ..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~------- 256 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SI------- 256 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HH-------
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HH-------
Confidence 455555555 55666666666655555444555555555554 5566666666665544 21 00
Q ss_pred HhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHhcCCCCChhhHH
Q 004273 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYN 513 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 513 (764)
.+..+...|.. .++.++|...|+......+...+.
T Consensus 257 -----------------------------------------a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~ 295 (490)
T 2xm6_A 257 -----------------------------------------AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQY 295 (490)
T ss_dssp -----------------------------------------HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 11111122222 345555555555443333444555
Q ss_pred HHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004273 514 TVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---CFKSASALVSMMVRDGFYPQTMTYTAL 585 (764)
Q Consensus 514 ~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~p~~~~~~~l 585 (764)
.+...|... ++.++|+..|++..+.| +...+..+-..|...| ++++|..+|++..+.| ++..+..|
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 369 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNL 369 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 555555554 56666666666666553 3344444444444433 5566666666666543 44555556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004273 586 IKILLD----YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 586 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
...|.. .+++++|.+.|++..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 666655 566666666666665543 34555555555555 566666666666666543
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=5.8e-18 Score=184.28 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004273 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVR---DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
.--..||+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457999999999999999999999988875 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 004273 618 NTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663 (764)
Q Consensus 618 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 663 (764)
++||.++++.|+ .++|.++|++|.+.|+.||..+|+++++++.+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 999999999998 4789999999999999999999999998777654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=5.7e-16 Score=160.95 Aligned_cols=291 Identities=8% Similarity=-0.118 Sum_probs=219.7
Q ss_pred HHhcCCcchHHH-HHHHhhhccC---CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004273 62 ALCRGERSRASH-LLLNLGHAHH---SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+...|++++|+. .|++...... ..+...+..+...+.+.|+++.|...++++.+.. +.+..++..+...|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888988 8887654431 1134567788888888999999999999998875 5567788888899999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH---------------HHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE---------------LLKL 202 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------ll~~ 202 (764)
+++|...|+++.+.. +.+..++..+...|...|++++|+..|+.+....+. +...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999887653 346678888899999999999999999998876433 2222211 2344
Q ss_pred HHhccChhHHHHHHHHHHccCCC--CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
+...|++++|...++.+.+..+. +..++..+..+|...|++++|...|+++.+ ..|+.
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~------------------ 250 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPND------------------ 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCC------------------
Confidence 44889999999999999886655 788999999999999999999999999887 34443
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...|+.+.+....
T Consensus 251 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 251 ------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 1588889999999999999999999988753 235667888889999999999999999988774322
Q ss_pred C----------chhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 361 P----------QDSTIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 361 ~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
. ...++..+..+|...|+.++|..++...
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1 1567889999999999999998887643
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=8.7e-16 Score=159.56 Aligned_cols=314 Identities=9% Similarity=-0.094 Sum_probs=227.0
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHH-HHHHHHHcCc-cc--cHHHHHHHHHHHHccCC
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVME-TWRMMEEKEI-GL--NNKCYLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~ 137 (764)
......|+.+...|+.+...+ +. . +...|+++.|.+ .+++..+... .| +...+..+...+.+.|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~--~~--~-------~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (368)
T 1fch_A 11 ESDVDFWDKLQAELEEMAKRD--AE--A-------HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD 79 (368)
T ss_dssp ----------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC
T ss_pred ccCcccHHHHHHHHHHHHcCC--ch--h-------hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC
Confidence 334567788888888886654 22 1 223477888888 8876665421 11 34567888999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
+++|...|+++.+.. +.+..+|..+...+.+.|++++|+..|+.+.+..+ .+..++..+...+...|++++|.+.++
T Consensus 80 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 80 LPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999997643 44667899999999999999999999999988753 377888999999999999999999999
Q ss_pred HHHccCCCCHHhHHHH---------------HHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCcc
Q 004273 218 DYIKHYSLSIFSLRKF---------------VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~l---------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
.+.+..+.+...+..+ +..+...|++++|...|+++.+ ..|+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~------------------ 216 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR--LDPTSID------------------ 216 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH--HSTTSCC------------------
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH--hCcCccc------------------
Confidence 9998665555554322 3334489999999999999988 4454100
Q ss_pred CCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 004273 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 362 (764)
..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...|+.+.+.... +
T Consensus 217 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 284 (368)
T 1fch_A 217 ----------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-Y 284 (368)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-c
Confidence 1588899999999999999999999998763 234678889999999999999999999999887543 5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C-----------CcchHHHHHHHhcCCCHHHHHHHHHHH
Q 004273 363 DSTIATLSVECSKALELDLAEALLDQISRCT--N-----------PKPFSAFLAACDTMDKPERAIKIFAKM 421 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~-----------~~~~~~li~~~~~~g~~~~a~~l~~~m 421 (764)
..++..+...|.+.|++++|...|+...... + ..+|..+..+|...|++++|..++.+-
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 7788899999999999999999999876532 2 567999999999999999999887743
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=7.2e-14 Score=152.57 Aligned_cols=163 Identities=9% Similarity=0.013 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN-A-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~-~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|......+.+.|++++|..+|+...+... .+...|......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHH
Confidence 4444444555555666666666665553 333 1 3555555555556666666666666655421 112222211111
Q ss_pred -HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHhcCC
Q 004273 589 -LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPD--PSTCHFVFSGYVNCGF 664 (764)
Q Consensus 589 -~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~ 664 (764)
+...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 224666677777766665431 2245666666666666677777777777666542 1221 2245555555666677
Q ss_pred hHHHHHHHHHHHH
Q 004273 665 HNSAMEALQVLSM 677 (764)
Q Consensus 665 ~~~a~~~~~~~~~ 677 (764)
.+.+..+.++...
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665543
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=9e-13 Score=142.30 Aligned_cols=352 Identities=9% Similarity=-0.001 Sum_probs=282.2
Q ss_pred CCHHhHHHHHHHhhc----cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 225 LSIFSLRKFVWSFTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 225 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
.++..+..+...|.. .++.+.|...|++..+.| +. ..+..|.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~-------------------------------~a~~~Lg 82 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YT-------------------------------PAEYVLG 82 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CH-------------------------------HHHHHHH
Confidence 355566666666666 788999999999887742 11 3677788
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004273 301 HACGR----TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 301 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
..|.. .+++++|.+.|++..+.| +...+..|-..+.. .+++++|...|+...+.| +...+..|...
T Consensus 83 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 156 (490)
T 2xm6_A 83 LRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDA 156 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88888 899999999999998865 55666677777777 789999999999998876 45667778888
Q ss_pred HHh----cCCHHHHHHHHHHHhhCCCCcchHHHHHHHhc----CCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCC
Q 004273 373 CSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 373 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~ 443 (764)
|.. .++.++|...|+...+.+++..+..+...|.. .+++++|+..|++..+ + +.
T Consensus 157 y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~-------------- 219 (490)
T 2xm6_A 157 YFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DE-------------- 219 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH--------------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CH--------------
Confidence 887 78999999999998887788888888888887 8999999999988765 3 11
Q ss_pred CchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519 (764)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~ 519 (764)
..+..+...|.. .+++++|...|++.....+...+..+...|
T Consensus 220 ----------------------------------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 220 ----------------------------------LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp ----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122233344443 678899999998865556677888888888
Q ss_pred HH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004273 520 VE----AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 520 ~~----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
.. .++.++|+..|++..+.| +...+..+-..|... +++++|...|++..+.| +...+..|...|.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88 899999999999998875 456666777777776 89999999999999875 4566777888888
Q ss_pred hcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--
Q 004273 591 DYG---DFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN-- 661 (764)
Q Consensus 591 ~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 661 (764)
+.| +.++|.++|++..+.| +...+..|...|.. .++.++|...|++..+.| +...+..|-..|.+
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred hCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 766 7899999999998764 67888889999988 899999999999999865 46677777778887
Q ss_pred --cCChHHHHHHHHHHHHhh
Q 004273 662 --CGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 662 --~g~~~~a~~~~~~~~~~~ 679 (764)
.++.++|.+.+++....+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999877665
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=2.2e-15 Score=152.35 Aligned_cols=238 Identities=10% Similarity=-0.004 Sum_probs=86.2
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.|+.++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 345566666666665 22236667777777777777777766532 34446666666666677777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhh
Q 004273 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 258 (764)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+.
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---- 149 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 149 (449)
T ss_dssp -----------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHTT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 766555543 3445666666667777777666665553 3555677777777777777777777777652
Q ss_pred cccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004273 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338 (764)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 338 (764)
.|..++.++.+.|++++|.+.+.++ .+..+|..++.+|
T Consensus 150 ------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC 187 (449)
T 1b89_A 150 ------------------------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 187 (449)
T ss_dssp ------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred ------------------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH
Confidence 6778888888888888888888877 2677888888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcC
Q 004273 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTM 408 (764)
Q Consensus 339 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~ 408 (764)
+..|+++.|...... +...+.-...++..|.+.|.+++|..+++...... ....|+-|-..|++-
T Consensus 188 v~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 188 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 888888888554432 22233334467777888888888877777766542 334455555555554
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=1.4e-15 Score=157.71 Aligned_cols=267 Identities=9% Similarity=-0.090 Sum_probs=154.3
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+.+.|+++.|+++|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 33445555666666666666666666666553 3355566666666666666666666666665432 22345566666
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCC---------ChhhHHHHHHHHHhccChhHHHHHHHHHHccCCC--CHHhHHHHH
Q 004273 166 GACAKLHSMVHANLCLDLMDSRMVGK---------NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFV 234 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li 234 (764)
..|.+.|++++|+..|+.+.+..+.. ....+..+...+...|++++|.+.++.+.+..+. +..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 66666666666666666665532110 0111223355566666666666666666665444 566666666
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHH
Q 004273 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 314 (764)
.+|...|++++|...|+++.+ ..|+. ..+|+.+...|...|++++|..
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~--~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALT--VRPED------------------------------YSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 666677777777777776665 23332 1466666667777777777777
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------CchhHHHHHHHHHHhcCCHHHHH
Q 004273 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-----------PQDSTIATLSVECSKALELDLAE 383 (764)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~ 383 (764)
.|++..+.. +.+..++..+..++...|++++|...|+++.+.... .+..++..+..++...|+.+.+.
T Consensus 269 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 269 AYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 777666542 123555666666666777777777777666553211 12456677777777778777777
Q ss_pred HHHHH
Q 004273 384 ALLDQ 388 (764)
Q Consensus 384 ~~~~~ 388 (764)
.+...
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66554
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=2e-13 Score=149.00 Aligned_cols=165 Identities=10% Similarity=0.011 Sum_probs=124.3
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhc-CCCCC-h-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004273 476 SHISMKNLLKALGAEGMIRELIQYFCDS-KTPLG-T-PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~-~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
+...+..++..+.+.|++++|..+|++. ...|+ . ..|...+..+.+.|+.++|..+|++..+.. +.+...|.....
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 4556667777888889999999998874 23343 2 478888888888999999999999988753 222333332222
Q ss_pred -HHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcC
Q 004273 553 -CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHD--VLLYNTILKKACEKG 628 (764)
Q Consensus 553 -~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g 628 (764)
.+...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2335799999999999888753 2357888899999999999999999999988753 2332 458888888888899
Q ss_pred CHHHHHHHHHHHHH
Q 004273 629 RIDVIEFIIEQMHQ 642 (764)
Q Consensus 629 ~~~~a~~~~~~m~~ 642 (764)
+.+.+..+.+++.+
T Consensus 478 ~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 478 DLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999886
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.3e-15 Score=158.06 Aligned_cols=265 Identities=10% Similarity=-0.074 Sum_probs=173.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...|.+.|++++|+..|+.+.+..+ .+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 34456667777777777777777777776543 33556777777777777777777777777776532 2466777777
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhH----------HHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccc
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSL----------RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 270 (764)
..+...|++++|...++.+.+..+.+...+ ..+...+...|++++|...|+++.+. .|+...
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~------ 212 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMID------ 212 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCC------
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccC------
Confidence 777777777777777777776433333322 33466777777777777777777763 343100
Q ss_pred cccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 004273 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 350 (764)
..+|..+...+...|++++|.+.|++..+.. +.+..+|..+..++...|++++|...
T Consensus 213 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 213 ----------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1467777777777777777777777777653 22455677777777777777777777
Q ss_pred HHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------------CCcchHHHHHHHhcCCCHHHHHH
Q 004273 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--------------NPKPFSAFLAACDTMDKPERAIK 416 (764)
Q Consensus 351 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~a~~ 416 (764)
|+.+.+.... +..++..+..+|.+.|++++|...|++..... +...|..+..++...|+.+.+..
T Consensus 270 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 270 YTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 7777765433 45667777777777777777777777765421 14557777777777777777766
Q ss_pred HHHH
Q 004273 417 IFAK 420 (764)
Q Consensus 417 l~~~ 420 (764)
+..+
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6544
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=2.6e-15 Score=151.85 Aligned_cols=281 Identities=12% Similarity=0.118 Sum_probs=131.5
Q ss_pred hcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004273 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
+.|+.++|.++++++. ++..|..+..++.+.|++++|++.|.+ .+|...|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677899999998882 234888999999999999999999965 2577789999999999999999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccC
Q 004273 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
+++...+. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88766542 3556788999999999999999988884 377789999999999999999999999976
Q ss_pred CCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHH
Q 004273 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
..|..++.++.+.|+++.|.+.+.++. +. .+|..++.+|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~-------------------------------~~Wk~v~~aC 187 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------ST-------------------------------RTWKEVCFAC 187 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CH-------------------------------HHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------Cc-------------------------------hhHHHHHHHH
Confidence 489999999999999999999999882 11 5899999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhc--CCHHH
Q 004273 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA--LELDL 381 (764)
Q Consensus 304 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~ 381 (764)
...|+++.|......+. +.|+. ...++..|.+.|.++++..+++...... .-....++-|.-.|++- +++.+
T Consensus 188 v~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~e 261 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 261 (449)
T ss_dssp HHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999966555422 23333 5568889999999999999999988765 33566677776677664 44555
Q ss_pred HHHHHHHHhhCC-------CCcchHHHHHHHhcCCCHHHHHHH
Q 004273 382 AEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 382 A~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l 417 (764)
..++|..-...+ +...|..++..|.+.++++.|...
T Consensus 262 hl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 262 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 555554321111 788899999999999999988774
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=6.9e-15 Score=149.84 Aligned_cols=269 Identities=6% Similarity=-0.110 Sum_probs=211.0
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004273 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
|......+......+...|++++|+..|+++.+.. +.+...+..+..++...|+++.|.+.++++.+.. +.+...+..
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 17 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp GGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 43445556677888999999999999999998875 4566778888899999999999999999999875 457788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH--------------HH-HHhccCCHHHHHHHHHHHHhcCCCCC
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF--------------LG-ACAKLHSMVHANLCLDLMDSRMVGKN 192 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~ 192 (764)
+...|...|++++|.+.|+++.+..+ .+...+..+ .. .+...|++++|...++.+.+.... +
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-D 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-C
Confidence 99999999999999999999876432 222233333 22 377889999999999999876433 6
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccc
Q 004273 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 272 (764)
..++..+...+...|++++|.+.++.+.+..+.+..++..+..++...|++++|...|+++.+ ..|+.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~---------- 239 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGY---------- 239 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCC----------
Confidence 778888888999999999999999999988888889999999999999999999999999887 34433
Q ss_pred cccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------CcccHHHHHHHHHhc
Q 004273 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP-----------SSHTYDGFIRAIVSD 341 (764)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~t~~~li~~~~~~ 341 (764)
..+|..+...+...|++++|.+.|++..+..... +..++..+..++...
T Consensus 240 --------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 240 --------------------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred --------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 1478888999999999999999999887643211 244566666666677
Q ss_pred CChhHHHHHHHH
Q 004273 342 RGLRNGMEVLKI 353 (764)
Q Consensus 342 ~~~~~a~~~~~~ 353 (764)
|++++|..+++.
T Consensus 300 g~~~~A~~~~~~ 311 (327)
T 3cv0_A 300 NRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHTTC
T ss_pred CCHHHHHHHHHH
Confidence 777776666543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=1.7e-14 Score=146.92 Aligned_cols=265 Identities=6% Similarity=-0.127 Sum_probs=181.6
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+...|+++.|..+|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHH
Confidence 34556777888888999999999999998875 4577788889999999999999999999987653 34566888899
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH--------------HH-HHHhccChhHHHHHHHHHHccCCCCHHhH
Q 004273 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL--------------LK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
..+...|++++|+..++.+...... +...+..+ .. .+...|++++|.+.++.+.+..+.+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 9999999999999999998876322 22233222 11 25566777777777777776666677777
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHH
Q 004273 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 310 (764)
..+...|...|++++|...++++.+. .|+. ..+|..+...+...|+++
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVEL--RPDD------------------------------AQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCc------------------------------HHHHHHHHHHHHHcCCHH
Confidence 77777777777777777777777662 3332 136667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------chhHHHHHHHHHHhcCCH
Q 004273 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP-----------QDSTIATLSVECSKALEL 379 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~ 379 (764)
+|...|++..+.. +.+..++..+...+...|++++|...++.+.+..... +..++..+..+|.+.|+.
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 7777777766543 2234556666666667777777777776666543221 234444555555555555
Q ss_pred HHHHHHHH
Q 004273 380 DLAEALLD 387 (764)
Q Consensus 380 ~~A~~~~~ 387 (764)
++|..+++
T Consensus 303 ~~A~~~~~ 310 (327)
T 3cv0_A 303 DLVELTYA 310 (327)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55555544
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=2.1e-14 Score=142.61 Aligned_cols=254 Identities=10% Similarity=-0.008 Sum_probs=189.5
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH
Q 004273 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI 93 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (764)
+......|++++|+ ..++ ......|++.......+.++|...|+++.|+..++.. .+|+..++..+
T Consensus 6 ~~~~~~~g~y~~ai-~~~~---------~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~l 71 (291)
T 3mkr_A 6 VKNAFYIGSYQQCI-NEAQ---------RVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMF 71 (291)
T ss_dssp HHHHHHTTCHHHHH-HHHH---------HSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHH---------hcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHH
Confidence 45567788899888 3333 3355667765555455678899999999999876542 24566678888
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004273 94 LNYCARSPDPLFVMETWRMMEEKEIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
...+...++.+.|++.++++...+..| +...+..+...|...|++++|++.+++ +.+...+..+...|.+.|
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLD 144 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCC
Confidence 888888899999999999998876434 566677777889999999999998875 356778888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHH---HHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHH
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYT---ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
++++|.+.|+.+.+.. |+..... ..+..+...|++++|..+|+++.+..+.++..++.+..++.+.|++++|...
T Consensus 145 ~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 145 RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998863 5543211 1223333457788888888888887778888888888888888888888888
Q ss_pred HHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 004273 250 LQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL-AEQLMLQMQSL 322 (764)
Q Consensus 250 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 322 (764)
|+++.+ ..|+.+ .++..++..+...|+.++ +.++++++.+.
T Consensus 223 l~~al~--~~p~~~------------------------------~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALD--KDSGHP------------------------------ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHH--HCTTCH------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCCH------------------------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 888877 445441 477777878888888765 56777777764
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=4.7e-14 Score=140.07 Aligned_cols=253 Identities=8% Similarity=-0.054 Sum_probs=133.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCc--chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGA--DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
++..-..|++..|+..++...... |+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 445556666666666666554432 222 2334455666666666666654433 1 2445556666666666666
Q ss_pred CHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004273 137 YLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
+.++|++.++++... +..| +...+..+...+.+.|++++|++.|+. ..+...+..+...+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666665432 2223 333444555666666666666666655 23455555555666666666666666
Q ss_pred HHHHHccCCCCHHh--HHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhH
Q 004273 216 WEDYIKHYSLSIFS--LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 216 ~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
++.+.+..+.+... ...++..+...|++++|..+|+++.+. .|+. .
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~------------------------------~ 200 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPT------------------------------L 200 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCC------------------------------H
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCc------------------------------H
Confidence 66655543222211 111223333345566666666665552 3322 1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHHC
Q 004273 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQN 357 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~m~~~ 357 (764)
..|+.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+..+ +.++++++.+.
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 355555556666666666666666655432 1133445555555555555543 34555555544
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.4e-12 Score=140.32 Aligned_cols=138 Identities=8% Similarity=-0.079 Sum_probs=75.7
Q ss_pred HHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHccCChhHHHHHHH
Q 004273 494 RELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA--TYNIMID-CCSIIRCFKSASALVS 568 (764)
Q Consensus 494 ~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-~~~~~~~~~~a~~~~~ 568 (764)
+.|...|+.. ..+.+...+..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++|...|+
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444432 123345678888888889999999999998888764332221 1222221 2346688888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004273 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 569 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 643 (764)
+..+. .|+...... ..+.+.++++...... +.+..+|..|...|...|+.++|++.|++.++.
T Consensus 397 kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 397 EGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88774 354332222 2233444555544332 345667888888888888888888888888764
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=2.4e-12 Score=138.51 Aligned_cols=270 Identities=9% Similarity=-0.084 Sum_probs=168.2
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHc-----C---ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---C
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEK-----E---IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---G 153 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 153 (764)
.....|+.+...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+-. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556888888888889999999998887652 1 12234578888889999999999998888764321 1
Q ss_pred --CCC-ChhhhHHHHHHHhc--cCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHH---HHhccChhHHHHHHHHHHccCC
Q 004273 154 --IYP-ILPVYNSFLGACAK--LHSMVHANLCLDLMDSRMVGKN-EVTYTELLKL---AVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 154 --~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
..+ ...++..+..++.+ .+++++|+..|+...+. .|+ ...+..+..+ +...++.++|.+.+++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 111 12355555555544 35788999999988875 344 3344443333 3345677888888888887777
Q ss_pred CCHHhHHHHHHHhhc----cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 225 LSIFSLRKFVWSFTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 225 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
.+..++..+...+.. .++.+.|.+.+++..+ ..|+. ..++..+.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~------------------------------~~~~~~lg 254 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGV------------------------------TDVLRSAA 254 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSC------------------------------HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccH------------------------------HHHHHHHH
Confidence 777777776655543 4577888888888876 44443 14788888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhc-------------------CChhHHHHHHHHHHHCCCC
Q 004273 301 HACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSD-------------------RGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~~~~ 360 (764)
..|...|++++|...|++..+. .|+. .++..+...+... +.++.|...++...+.+..
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999998875 3443 3444444433221 1233444444444443322
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004273 361 PQDSTIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 391 (764)
+...+..+...|...|++++|...|++...
T Consensus 333 -~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 333 -LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp -TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 233344455555555555555555555443
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=9e-13 Score=130.33 Aligned_cols=248 Identities=11% Similarity=-0.107 Sum_probs=127.7
Q ss_pred hCCCChhHHHHHHHHHHHcCc---cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH
Q 004273 98 ARSPDPLFVMETWRMMEEKEI---GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 174 (764)
...++++.|++.++++.+... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 344566666666666665421 1234455666666666666666666666665432 22344555566666666666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 175 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
++|+..|+...+. .+.+..++..+..+|...|++++|...|+++.
T Consensus 94 ~~A~~~~~~al~~-----------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 94 DAAYEAFDSVLEL-----------------------------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHHH-----------------------------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----------------------------------CccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6666666655553 33334444444455555555555555555555
Q ss_pred HhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004273 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334 (764)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 334 (764)
+ ..|+. ..+...+..+...|++++|...+.+..... |+......+
T Consensus 139 ~--~~~~~-------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 183 (275)
T 1xnf_A 139 Q--DDPND-------------------------------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNI 183 (275)
T ss_dssp H--HCTTC-------------------------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHH
T ss_pred H--hCCCC-------------------------------hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 4 23332 111122222334455566666665554432 222222234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCH
Q 004273 335 IRAIVSDRGLRNGMEVLKIMQQNNLKP---QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411 (764)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 411 (764)
...+...++.++|...+....+..... +..++..+...|.+.|++++|...|+..... ++..+.....++...|++
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~l~~~ 262 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-NVHNFVEHRYALLELSLL 262 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHH
Confidence 444455555555555555554432210 1345556666666677777777777766665 444455555566666666
Q ss_pred HHHHHHH
Q 004273 412 ERAIKIF 418 (764)
Q Consensus 412 ~~a~~l~ 418 (764)
++|++.+
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 6665544
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=7.7e-12 Score=121.77 Aligned_cols=211 Identities=12% Similarity=0.031 Sum_probs=181.9
Q ss_pred CchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHH
Q 004273 46 LNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY 125 (764)
Q Consensus 46 ~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (764)
..|+.....+..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|.+.++++.+.. +.+...+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 108 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVL 108 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHH
Confidence 3455556777788888999999999999999998875 4566778889999999999999999999999875 4577889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
..+...|...|++++|.++|+++.+ .+..| +...+..+...+.+.|++++|...|+...+... .+..++..+...+.
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHH
Confidence 9999999999999999999999975 22334 456788899999999999999999999988643 35778888999999
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..|++++|...++.+.+..+.+...+..+...+.+.|+.+.|.+.++++.+ ..|+.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 242 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGS 242 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTS
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCC
Confidence 999999999999999998888899999999999999999999999999988 44544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.5e-12 Score=123.83 Aligned_cols=190 Identities=8% Similarity=-0.086 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcc--cc----HHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG--LN----NKCYL 126 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 126 (764)
..+..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|.+.+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455566667777777777777776665 55666666667777777777777777776654311 11 45666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004273 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+...|...|++++|...|++..+. .|+ ...+.+.|++++|...++.+....+ .+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE---HRT-------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCC-------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---Cch-------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 6666777777777777777766543 233 1234445666666666666655421 1334455555555666
Q ss_pred cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
|++++|...++...+..+.+..++..+..+|...|++++|...|++..+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666666655555555666666666666666666666666555
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.9e-12 Score=124.22 Aligned_cols=227 Identities=11% Similarity=-0.075 Sum_probs=177.5
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCC----hhhhH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI-YPI----LPVYN 162 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 162 (764)
..+..+...+...|+++.|.+.|+++.+.. .+...+..+...|...|++++|...|++..+..+- .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 457778888888999999999999998887 77888889999999999999999999887654311 111 46788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+.+.|++++|...|+...+. .|+. ..+...|++++|...++.+.+..+.+...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 8888999999999999999998875 3443 335566788888888888887777777888888888888888
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
+++|...|+++.+ ..|+. ...|..+...+...|++++|...|++..+.
T Consensus 155 ~~~A~~~~~~a~~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 155 WPNAVKAYTEMIK--RAPED------------------------------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCccc------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888877 33433 147788888888888888888888888775
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004273 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 323 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
. +.+..++..+...+...|++++|...++...+..
T Consensus 203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 3 2245667777778888888888888888876643
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=3.1e-12 Score=121.10 Aligned_cols=196 Identities=8% Similarity=-0.111 Sum_probs=120.8
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..+..+...+.+.|++++|+..|+...+..+. +...+..+...+...|++++|...++...+..|.+...+..+..++.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444444444444444444444444443211 33344444444444455555555555444444445555555555566
Q ss_pred cc-----------CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccC
Q 004273 239 RL-----------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 239 ~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 307 (764)
.. |++++|+..|++..+ ..|+. ...|..+...+...|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~------------------------------~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAER--VNPRY------------------------------APLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTT
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHH--hCccc------------------------------HHHHHHHHHHHHHcC
Confidence 66 999999999999988 55554 157888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004273 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 387 (764)
++++|+..|++..+.. .+...+..+..++...|++++|...|+...+.... +...+..+...+...|++++|...|+
T Consensus 133 ~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 133 ERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998876 57778888888888999999999999998886544 55666777777777788888777776
Q ss_pred HHh
Q 004273 388 QIS 390 (764)
Q Consensus 388 ~~~ 390 (764)
+..
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 653
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=2.3e-12 Score=122.03 Aligned_cols=196 Identities=11% Similarity=-0.010 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+..+...+...|++++|+..|++..+.+ |.++..+..+..++.+.|++++|+..+++..+.+ +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345556777899999999999999998876 4567778889999999999999999999999885 55677899999999
Q ss_pred Hcc-----------CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004273 133 CKG-----------GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 133 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
... |++++|+..|++..+.+ +.+...|..+...+.+.|++++|+..|++..+.. .+...+..+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 999 99999999999997654 2356688899999999999999999999999887 68889999999
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
++...|++++|...++...+..|.+...+..+..++...|++++|...|++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999889999999999999999999999999988764
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=3.6e-12 Score=125.97 Aligned_cols=250 Identities=8% Similarity=-0.151 Sum_probs=192.3
Q ss_pred hcCCcchHHHHHHHhhhccC---CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004273 64 CRGERSRASHLLLNLGHAHH---SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
..|++++|+..|+++.+... +.+...+..+...+...|+++.|.+.|+++.+.+ +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45788999999999987632 1234568888899999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHH
Q 004273 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
|...|++..+.. +.+..++..+...|.+.|++++|...|+.+.+. .|+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999997653 335678999999999999999999999999885 4555555556666677899999999998888
Q ss_pred ccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
...+++...+. ++..+...++.+.|...+....+....... .+ ..+|..+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------------~~--~~~~~~la 222 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE--------------------------HL--SETNFYLG 222 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH--------------------------HH--HHHHHHHH
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc--------------------------cc--cHHHHHHH
Confidence 87777766665 677777888889999998887653221110 00 14788889
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 004273 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 351 (764)
..+...|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999875 3433 233344566777777776655
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=3.2e-11 Score=127.99 Aligned_cols=223 Identities=9% Similarity=-0.006 Sum_probs=128.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR---GLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
.+..|...|...+.++++......+.+.-...+...+..|-..+...| +.++|...|+...+.|.. +...+..|..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 556666666666655444444333322212233446667777777777 778888888888777754 4444455555
Q ss_pred HHHhc----CCHHHHHHHHHHHhhCCCCcchHHHHHH-H--hcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCC
Q 004273 372 ECSKA----LELDLAEALLDQISRCTNPKPFSAFLAA-C--DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 372 ~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~ 443 (764)
.|... ++.++|...|+... .+++..+..|-.. | ...+++++|+..|++..+ | +..
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~------------- 284 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR------------- 284 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH-------------
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH-------------
Confidence 66544 67888888888877 4477777777766 4 457888888888887765 3 111
Q ss_pred CchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhc----cCcHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519 (764)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~ 519 (764)
.+..|...|.. ..++++|...|+... +.+...+..+...|
T Consensus 285 -----------------------------------A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 285 -----------------------------------AELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY 328 (452)
T ss_dssp -----------------------------------HHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 11222222321 126677777777665 44555555555555
Q ss_pred HH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCC
Q 004273 520 VE----AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI----IRCFKSASALVSMMVRDG 574 (764)
Q Consensus 520 ~~----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g 574 (764)
.. ..+.++|..+|++..+.|. |+ ....|-..|.. ..+.++|..+|+...+.|
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44 2366666666666666552 22 22223333332 235556666666655554
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=2.8e-11 Score=115.34 Aligned_cols=206 Identities=12% Similarity=-0.037 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
....+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|.+.++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 35566677888999999999999999998875 4556788889999999999999999999999875 457778999999
Q ss_pred HHHcc-CCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC
Q 004273 131 ALCKG-GYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 131 ~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
.|... |++++|...|+++.+ .+..| +...+..+...+.+.|++++|+..|+.+.+... .+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 99999 999999999999976 33333 356788899999999999999999999988642 257788889999999999
Q ss_pred hhHHHHHHHHHHccCC-CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 209 LSAVHEIWEDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+++|...++.+.+..+ .+...+..+...+...|+.+.|..+++.+.+ ..|+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~ 215 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCC
Confidence 9999999999998877 8888899999999999999999999999886 44544
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=2.5e-11 Score=128.78 Aligned_cols=311 Identities=11% Similarity=0.028 Sum_probs=199.1
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCCh---hHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDP---LFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
+...+.+.|++++|++.|++..+.| ++..+..+...+...|++ +.|.+.|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4566788999999999999998876 344455566666667777 8999999988854 55566677775555
Q ss_pred cC-----CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH---HHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004273 135 GG-----YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV---HANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 135 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.| ++++|..+|++..+. + +...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 54 789999999998753 2 2337777888887765544 3444455544443 455667777778887
Q ss_pred cChhHHHHHHHHHHcc-CCCCHHhHHHHHHHhhccC---CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCcc
Q 004273 207 KNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLR---DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+.++++......+.+. ...++.++..|..+|.+.| +.++|++.|++..+.|....
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a--------------------- 213 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA--------------------- 213 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH---------------------
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH---------------------
Confidence 8666555554444332 3344448899999999999 99999999999988553322
Q ss_pred CCcccchhhhHhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-H--HhcCChhHHHHHHHHHH
Q 004273 283 LNALPVMKVLRWSFSDVIHACGRT----QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA-I--VSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~--~~~~~~~~a~~~~~~m~ 355 (764)
..+..|...|... +++++|+..|++.. .| +...+..+-.. + ...+++++|...|++..
T Consensus 214 -----------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 214 -----------QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp -----------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 2445666666554 78999999999987 33 44555555555 3 46789999999999988
Q ss_pred HCCCCCchhHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCcchHHHHHHHhc----CCCHHHHHHHHHHHhh
Q 004273 356 QNNLKPQDSTIATLSVECSKAL-----ELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ 423 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~ 423 (764)
+.| +...+..|...|. .| +.++|...|+... .+++..+..|-..|.. ..++++|...|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 877 5566666777776 45 8888888888877 5566677777666655 3367777777776655
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=3e-11 Score=119.13 Aligned_cols=160 Identities=9% Similarity=-0.063 Sum_probs=72.9
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh--hhhHHHHHHHh
Q 004273 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL--PVYNSFLGACA 169 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~ 169 (764)
.....+...|+++.|+..++...+.. +.+...+..+...|...|++++|+..|++..+ .+..|+. ..|..+...+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 33444444455555555555544442 22333444444455555555555555554443 1111111 11444444555
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH-HHhhccCCHHHHHH
Q 004273 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV-WSFTRLRDLKSAYE 248 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~ 248 (764)
+.|++++|+..|+...+..+. +..++..+...+...|++++|.+.++...+..+.+...+..+. ..|. .+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHH
Confidence 555555555555554443211 3334444444555555555555555555444444444444444 2222 235555555
Q ss_pred HHHHHHH
Q 004273 249 TLQHMVA 255 (764)
Q Consensus 249 ~~~~m~~ 255 (764)
.|+++.+
T Consensus 164 ~~~~a~~ 170 (272)
T 3u4t_A 164 SFVKVLE 170 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=2.6e-11 Score=118.00 Aligned_cols=165 Identities=9% Similarity=-0.068 Sum_probs=100.0
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 167 (764)
..+..+...+...|+++.|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence 345556666666677777777777766653 3355566666677777777777777777665432 2244566666666
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 168 CAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
|.+.|++++|.+.|+.+...+..| +...+..+...+...|++++|.+.++...+..+.+...+..+..++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777666522233 3344455555555666666666666665555555555555566666666666666
Q ss_pred HHHHHHHHH
Q 004273 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~m~~ 255 (764)
...|+++.+
T Consensus 195 ~~~~~~~~~ 203 (252)
T 2ho1_A 195 RQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 666655554
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=3.4e-11 Score=114.67 Aligned_cols=200 Identities=7% Similarity=-0.125 Sum_probs=127.1
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..+..+...+...|+++.|.+.++.+.+.. +.+...+..+...|...|++++|.+.|++..+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 3445666666777777777777777777653 3455666777777777777777777777765432 234556667777
Q ss_pred HHhcc-CCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH
Q 004273 167 ACAKL-HSMVHANLCLDLMDSRMVGKN-EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 167 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
.+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++.+.+..+.+...+..+..++.+.|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 77777 777777777777766222222 3455566666666777777777776666655556666666666666667777
Q ss_pred HHHHHHHHHHHhhhcc-cchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 245 SAYETLQHMVALAMMG-KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 245 ~A~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+|...++++.+. .| +. ...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSR--VEVLQ------------------------------ADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH--HCSCC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCC------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777666666652 22 21 02455555566666666666666666654
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=8e-12 Score=120.83 Aligned_cols=206 Identities=9% Similarity=-0.050 Sum_probs=162.5
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHH
Q 004273 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 129 (764)
.....+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|.+.++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344556666777889999999999999998865 4567778888899999999999999999999875 45778899999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccCh
Q 004273 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..|...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+... .+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999987654 34567888999999999999999999999987643 3677888889999999999
Q ss_pred hHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
++|...++.+.+..+.+..++..+..+|.+.|++++|...|+++.+ ..|+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~ 226 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDH 226 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcch
Confidence 9999999999988888899999999999999999999999999988 45544
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=3.4e-11 Score=118.68 Aligned_cols=244 Identities=9% Similarity=-0.063 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc--HHHHHHHHHHH
Q 004273 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN--NKCYLLMMQAL 132 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~ 132 (764)
+......+...|++++|+..|++..+.. +.+...+..+..++...|+++.|++.++...+.+..++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445667889999999999999998876 44566888899999999999999999999998432222 23488999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
...|++++|+..|++..+.. +.+..+|..+...|...|++++|+..|+...+.. +.+..++..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997654 2355689999999999999999999999988763 22455666665245556699999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCC---HHHHHHHHHHHHHhhhc-ccchhcccccccccccccCCCccCCcccc
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRD---LKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
.+.++.+.+..+.+...+..+..++...|+ .+.|...|+++.+.... |+..
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------- 216 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY------------------------- 216 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-------------------------
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-------------------------
Confidence 999999999888888999999999998888 88899999998874211 2210
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc
Q 004273 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 329 (764)
......+|..+...|.+.|++++|.+.|++..+. .|+..
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHH
Confidence 0001147888899999999999999999999875 35443
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=4.1e-11 Score=122.98 Aligned_cols=245 Identities=9% Similarity=-0.056 Sum_probs=190.3
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC-HHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY-LEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
..|..+..++...|+++.|++.+++.++.+ +-+..+|+.+..+|...|+ +++|+..|++..+.+ +-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 346777777888899999999999988875 4567788888889999996 999999999887654 335668888888
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc-cCCHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 245 (764)
++.+.|++++|+..|+.+.+..+. +...|..+..++...|++++|...++.+++..+.+..+|+.+..++.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999886533 677888888888899999999999999999888899999999999988 666577
Q ss_pred H-----HHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccC--CHHHHHHHHHH
Q 004273 246 A-----YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ--NSGLAEQLMLQ 318 (764)
Q Consensus 246 A-----~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~ 318 (764)
| +..|++..+ +.|+. ...|+.+...+...| ++++|++.+.+
T Consensus 254 A~~~~el~~~~~Al~--l~P~~------------------------------~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHN------------------------------ESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HCCCC------------------------------HHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 7 588888887 56655 258888888888888 68999999988
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCCCCCchhHHHHHHH
Q 004273 319 MQSLGLQPSSHTYDGFIRAIVSDR---------GLRNGMEVLKIM-QQNNLKPQDSTIATLSV 371 (764)
Q Consensus 319 m~~~g~~p~~~t~~~li~~~~~~~---------~~~~a~~~~~~m-~~~~~~~~~~~~~~li~ 371 (764)
+ +. ...+...+..+...+.+.| .+++|..+++.+ .+.+.. ....|..+..
T Consensus 302 ~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~ 361 (382)
T 2h6f_A 302 L-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGR 361 (382)
T ss_dssp H-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHH
T ss_pred h-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 7 32 2334566777888887764 258899999888 554322 2334444443
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=8.5e-12 Score=131.12 Aligned_cols=278 Identities=10% Similarity=-0.112 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC----cchHHHHHHHhhCCCChhHHHHHHHHHHHc----Cccc-cH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEK----EIGL-NN 122 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 122 (764)
...+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+++..+. +-.| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445556777889999999999999998875 223 245778888889999999999999987653 2122 35
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCC--------------------HHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHS--------------------MVHAN 178 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 178 (764)
.++..+...|...|++++|...+++..+...-.++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 57888889999999999999999877543211122 3478888888999999 99999
Q ss_pred HHHHHHHhc----CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccC--CCC----HHhHHHHHHHhhccCCHHHHH
Q 004273 179 LCLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY--SLS----IFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 179 ~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~ 247 (764)
..++..... +-.| ...++..+...+...|++++|.+.++...+.. .++ ..++..+..+|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876542 1111 23366777778888999999999998887631 122 237888888999999999999
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CC
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QP 326 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p 326 (764)
..+++..+........ .....++..+...+...|++++|...|++..+... .+
T Consensus 248 ~~~~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDR--------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcCc--------------------------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 9999887632221110 00125778888888999999999998888764311 01
Q ss_pred C----cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 327 S----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 327 ~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
+ ..++..+...+...|++++|...+++..+
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 33555666667777777777777776554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=1.4e-11 Score=126.53 Aligned_cols=241 Identities=10% Similarity=-0.031 Sum_probs=196.5
Q ss_pred cccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCC-cchHHHHHHHhhhc
Q 004273 3 RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGE-RSRASHLLLNLGHA 81 (764)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~-~~~A~~~~~~~~~~ 81 (764)
.|.....+..+...+.+.|++++|+ ..|...+...|+. ...|..+...+...|+ +++|+..|++....
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al----------~~~~~al~l~P~~-~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAF----------KLTRDAIELNAAN-YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHH----------HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHH----------HHHHHHHHhCccC-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 4555567777888899999999999 5555567777874 4456666777888997 99999999999987
Q ss_pred cCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhh
Q 004273 82 HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161 (764)
Q Consensus 82 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (764)
+ +-+...|+.+..++...|+++.|+..|+++++.+ +.+...|..+..++.+.|++++|+..|+++.+.+ +.+...|
T Consensus 162 ~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~ 237 (382)
T 2h6f_A 162 Q-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVW 237 (382)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHH
Confidence 6 4566788999999999999999999999999986 5678899999999999999999999999998764 3456789
Q ss_pred HHHHHHHhc-cCCHHHH-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcc--ChhHHHHHHHHHHccCCCCHHhHHHH
Q 004273 162 NSFLGACAK-LHSMVHA-----NLCLDLMDSRMVGKNEVTYTELLKLAVWQK--NLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 162 ~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+.+..++.+ .|..++| +..|+......+. +...|..+...+...| ++++|.+.+..+ +..+.+...+..+
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~L 315 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFL 315 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHH
Confidence 999999998 6665777 5888888875433 5667888888888877 689999999888 6677888999999
Q ss_pred HHHhhccC---------CHHHHHHHHHHH-HHhhhcccc
Q 004273 234 VWSFTRLR---------DLKSAYETLQHM-VALAMMGKL 262 (764)
Q Consensus 234 i~~~~~~g---------~~~~A~~~~~~m-~~~~~~~~~ 262 (764)
..+|.+.| ..++|+++|+++ .+ +.|..
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r 352 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIR 352 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGG
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchh
Confidence 99998874 358999999998 65 45544
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.6e-11 Score=125.17 Aligned_cols=278 Identities=10% Similarity=-0.116 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC----cchHHHHHHHhhCCCChhHHHHHHHHHHHc----Ccc-ccH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEK----EIG-LNN 122 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 122 (764)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|.+.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3445555677889999999999999998875 223 245778888899999999999999987653 212 235
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCC--------------------HHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHS--------------------MVHAN 178 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 178 (764)
.++..+...|...|++++|...+++..+...-.++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 57888889999999999999999887543211122 3377888888999999 89999
Q ss_pred HHHHHHHhc----CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCC--C----CHHhHHHHHHHhhccCCHHHHH
Q 004273 179 LCLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--L----SIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 179 ~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~ 247 (764)
..++..... +..| ...++..+...+...|++++|.+.++...+..+ + ...++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776542 1111 233566777778888999999988888875311 1 1337778888888889999998
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-C
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-P 326 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p 326 (764)
..+++..+........ .....++..+...+...|++++|...+++..+.... .
T Consensus 244 ~~~~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDR--------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcch--------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 8888877632221110 000146777788888888888888888776542100 0
Q ss_pred C----cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 327 S----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 327 ~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
+ ..++..+...+...|++++|...+++..+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 22344445555555555555555555544
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=2.2e-11 Score=117.62 Aligned_cols=164 Identities=10% Similarity=-0.080 Sum_probs=73.8
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 167 (764)
..|..+...+...|+++.|...|+++.+.. +.+...+..+...|...|++++|...|++..+.. +.+..++..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHH
Confidence 345555555555566666666666655542 3344555555555666666666666665554332 2234455555555
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH
Q 004273 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
+...|++++|...|+.+.+... .+...+..+...+...|++++|.+.++.+.+..+.+...+..+..++.+.|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555554321 133444444444445555555555555444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 004273 248 ETLQHMVA 255 (764)
Q Consensus 248 ~~~~~m~~ 255 (764)
..|+++.+
T Consensus 180 ~~~~~~~~ 187 (243)
T 2q7f_A 180 SQFAAVTE 187 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=2e-11 Score=128.58 Aligned_cols=243 Identities=10% Similarity=-0.143 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCc----chHHHHHHHhhCCCChhHHHHHHHHHHHc----C-ccccH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA----DDFFHILNYCARSPDPLFVMETWRMMEEK----E-IGLNN 122 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 122 (764)
...+......+...|++++|+..|++..+.+ +.+. ..+..+...+...|+++.|.+.+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3444456677888999999999999988875 2233 35777888888889999999999887764 1 12345
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcC----CCCChhhhHHHHHHHhccCC-----------------HHHHHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYG----IYPILPVYNSFLGACAKLHS-----------------MVHANLCL 181 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 181 (764)
.++..+...|...|++++|...|++..+... .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788888899999999999999887654311 11123477788888888899 88888888
Q ss_pred HHHHhc----CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCC--CC----HHhHHHHHHHhhccCCHHHHHHHH
Q 004273 182 DLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LS----IFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 182 ~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
++..+. +-.| ...++..+...+...|++++|.+.+++..+..+ .+ ..++..+..+|...|++++|...|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776442 1111 223566677777888888888888887775321 11 236777777888888888888888
Q ss_pred HHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 251 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
++..+........ .....++..+...+...|++++|...|++...
T Consensus 287 ~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 287 KRTLALAVELGER--------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH--------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8776632211110 00014666777777777777777777777654
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.2e-11 Score=130.39 Aligned_cols=281 Identities=10% Similarity=-0.095 Sum_probs=208.2
Q ss_pred chhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhh---hHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 004273 6 LRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEES---ISKATQMQIVDALCRGERSRASHLLLNLGHAH 82 (764)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~---~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~ 82 (764)
....+..+...+...|++++|+ ..++++ +...|+. ....+..+...+...|++++|+..|++.....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~-~~~~~a---------l~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGV-AFFQAA---------IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHH-HHHHHH---------HHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHH-HHHHHH---------HHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445667888899999999999 554443 3334442 23567777888899999999999999886541
Q ss_pred -----CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC-----ccccHHHHHHHHHHHHccCC---------------
Q 004273 83 -----HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE-----IGLNNKCYLLMMQALCKGGY--------------- 137 (764)
Q Consensus 83 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~--------------- 137 (764)
.+.....+..+...+...|+++.|.+.+++..+.. .+....++..+...|...|+
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 12233557888889999999999999999887652 12235578889999999999
Q ss_pred --HHHHHHHHHHHhhhc---CC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhc
Q 004273 138 --LEEASNLIYFLGERY---GI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQ 206 (764)
Q Consensus 138 --~~~A~~~~~~~~~~~---~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~ 206 (764)
+++|++.+++..+.. +. .....++..+...|...|++++|+..|++..+.... ++ ..++..+...+...
T Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL 276 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC
Confidence 999999988764321 11 112347888889999999999999999988764211 12 22677888899999
Q ss_pred cChhHHHHHHHHHHccCC------CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 207 KNLSAVHEIWEDYIKHYS------LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
|++++|.+.++...+..+ ....++..+..+|...|++++|...|++..+........
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------- 339 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR----------------- 339 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----------------
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-----------------
Confidence 999999999999886322 225678889999999999999999999988732221110
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
.....++..+...|...|++++|.+.|++..+.
T Consensus 340 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 340 ---------IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 000147888899999999999999999988763
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=1.4e-08 Score=111.23 Aligned_cols=471 Identities=10% Similarity=0.062 Sum_probs=250.7
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC---HHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY---LEEASN 143 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 143 (764)
...+.+..|+..+..+ +.|...+..++..+.+.++++.+..+|+.+... ++.+...|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455555666666555 568888889998888888899999999998887 46677788888888888888 999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCH--------HHHHHHHHHHHhc-CC-CCC-hhhHHHHHHHHH--------
Q 004273 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSM--------VHANLCLDLMDSR-MV-GKN-EVTYTELLKLAV-------- 204 (764)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~-~p~-~~t~~~ll~~~~-------- 204 (764)
+|++.......+|++..|..-+.-..+.++. +...++|+..... |. .|+ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9998875432347777777776655554443 3344677765543 55 454 345666555432
Q ss_pred -hccChhHHHHHHHHHHccCCCC--HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCc
Q 004273 205 -WQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 205 -~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
..++++.+..+|..+... |.. ..+|......-...+. ..+.+++.+..
T Consensus 205 eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~--------------------------- 255 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS--------------------------- 255 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------------
T ss_pred HHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------------
Confidence 234466677777776642 111 1122111110000000 00111111100
Q ss_pred cCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH--CCCC---CCc--------------------ccHHHHHH
Q 004273 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS--LGLQ---PSS--------------------HTYDGFIR 336 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~---p~~--------------------~t~~~li~ 336 (764)
.+++.|...+.++.. .++. |.. ..|...+.
T Consensus 256 -------------------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~ 310 (679)
T 4e6h_A 256 -------------------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR 310 (679)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH
Confidence 111222222222111 0100 000 00111110
Q ss_pred HHHhcC--------ChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHHHhhCC--CCcchHHHHHHH
Q 004273 337 AIVSDR--------GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE-ALLDQISRCT--NPKPFSAFLAAC 405 (764)
Q Consensus 337 ~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~--~~~~~~~li~~~ 405 (764)
+.+.. ..+.+..+|++....... +...|-..+..+...|+.+.|. .+|+...... +...|-.++...
T Consensus 311 -fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 311 -WESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQY 388 (679)
T ss_dssp -HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -HHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00000 012233445554443222 4444555555555555555554 5555544321 223344455555
Q ss_pred hcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 004273 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485 (764)
Q Consensus 406 ~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (764)
-+.|++++|..+|+.+...+ |. .+..+ .... |+.
T Consensus 389 e~~~~~e~aR~iyek~l~~l-~~--~~~~~----------------------------------~~~~-p~~-------- 422 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRI-HL--DLAAL----------------------------------MEDD-PTN-------- 422 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HH--HHHHH----------------------------------HHHS-TTC--------
T ss_pred HHhCCHHHHHHHHHHHHHHH-HH--Hhhhh----------------------------------hhcc-Ccc--------
Confidence 56666666666666554300 00 00000 0000 000
Q ss_pred HHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHccCChhHH
Q 004273 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-G-IPPNAATYNIMIDCCSIIRCFKSA 563 (764)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~~~~a 563 (764)
+...... .......|...+....+.|+.+.|..+|.+..+. + ..+......+.+.- ...++.+.|
T Consensus 423 --------~~~~~~~----~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~A 489 (679)
T 4e6h_A 423 --------ESAINQL----KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTA 489 (679)
T ss_dssp --------HHHHHHH----HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHH
T ss_pred --------hhhhhhh----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHH
Confidence 0000000 0001225666677777778888888888888775 2 12222222222321 123558999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004273 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
..+|+...+. ++-+...|...++.....|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.
T Consensus 490 r~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 490 CKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888876 44456667788888888899999999999987653222 34578888888888999999999999998
Q ss_pred HCCCCCCHhhHHHHHH
Q 004273 642 QNKVQPDPSTCHFVFS 657 (764)
Q Consensus 642 ~~~~~p~~~~~~~ll~ 657 (764)
+. .|+......+..
T Consensus 569 ~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 569 EK--FPEVNKLEEFTN 582 (679)
T ss_dssp HH--STTCCHHHHHHH
T ss_pred Hh--CCCCcHHHHHHH
Confidence 73 455544444433
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.32 E-value=9.6e-10 Score=108.27 Aligned_cols=221 Identities=9% Similarity=-0.075 Sum_probs=111.0
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK----GGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
.+..+...+...|+++.|.+.|++..+.+ +...+..+...|.. .|++++|...|++..+. + +...+..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHHHH
Confidence 33444444444445555555555444421 23344444444444 45555555555544332 1 33344444
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----ccChhHHHHHHHHHHccCCCCHHhHHHHHHH
Q 004273 165 LGACAK----LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 165 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
...|.. .+++++|+..|+...+.+ +..++..+-..|.. .+++++|...++...+.. +...+..+...
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 444444 555555555555544432 33444444444444 455555555555444322 33444445555
Q ss_pred hhc----cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHc----cCC
Q 004273 237 FTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR----TQN 308 (764)
Q Consensus 237 ~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 308 (764)
|.. .+++++|...|++..+.+ +. ..+..+...|.. .++
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------------------~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK--DS--------------------------------PGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CH--------------------------------HHHHHHHHHHHHTCSSCCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC--CH--------------------------------HHHHHHHHHHHcCCCCCcc
Confidence 554 566666666666665531 11 255555666666 666
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 004273 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 358 (764)
+++|+..|++..+.+ +...+..+-..+.. .+++++|...|+...+.|
T Consensus 202 ~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 202 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666666543 23445555555555 666666666666666554
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.31 E-value=1.3e-09 Score=107.44 Aligned_cols=126 Identities=10% Similarity=-0.095 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCChhhH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
++.++..+...|...|++++|...|++..+ +.+...+..+...|.. .+++++|+..|+...+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 455666777777777888888888877764 2244566667777777 777777777777776654 55555
Q ss_pred HHHHHHHHh----ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc----cCCHHHHHHHHHHHHH
Q 004273 197 TELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR----LRDLKSAYETLQHMVA 255 (764)
Q Consensus 197 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 255 (764)
..+-..+.. .+++++|.+.++...+. .+..++..+...|.. .+++++|...|++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 555555555 55556655555555443 144455555555555 5555555555555544
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.6e-10 Score=121.28 Aligned_cols=276 Identities=9% Similarity=-0.069 Sum_probs=188.2
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCC-Ch
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYP-IL 158 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~ 158 (764)
...+......+...|+++.|...|++..+.+ +.+ ..++..+...|...|++++|...|++..+. .+..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445667778888999999999999999874 223 357888899999999999999999876432 11112 24
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhccC--------------------hhHHH
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKN--------------------LSAVH 213 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~--------------------~~~a~ 213 (764)
.++..+...|...|++++|+..++...+.... ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 47888888999999999999999887653111 12 3467778888889999 99999
Q ss_pred HHHHHHHcc------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCccc
Q 004273 214 EIWEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 214 ~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
..+....+. .+....++..+..+|...|++++|...|++..+........
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------ 223 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK------------------------ 223 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH------------------------
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc------------------------
Confidence 988887652 12224578888899999999999999999988632221110
Q ss_pred chhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C
Q 004273 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-P 361 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~ 361 (764)
.....+|..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++...+.... .
T Consensus 224 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 224 --AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 011247888889999999999999999887642100 11 335556666677777777777777666542110 0
Q ss_pred c----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 362 Q----DSTIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 362 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
+ ..++..+...|...|++++|...+++.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 223344444555555555555554443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=1.4e-10 Score=118.13 Aligned_cols=275 Identities=9% Similarity=-0.071 Sum_probs=188.4
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCC-CChhhh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIY-PILPVY 161 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~-~~~~~~ 161 (764)
+......+...|+++.|...++++.+.+ +.+ ...+..+...|...|++++|...+++..+. .+.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4455667778899999999999999874 223 357888899999999999999999876432 1111 124578
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhccC--------------------hhHHHHHH
Q 004273 162 NSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKN--------------------LSAVHEIW 216 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~~ 216 (764)
..+...|...|++++|...++...+.... ++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 88889999999999999999887653111 12 3367777888888999 89998888
Q ss_pred HHHHcc------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchh
Q 004273 217 EDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 217 ~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
+...+. .+....++..+...+...|+++.|...+++..+........ .
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------~ 220 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------A 220 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--------------------------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh--------------------------H
Confidence 887642 12224578888889999999999999999987632221110 0
Q ss_pred hhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCC----C-
Q 004273 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL----K- 360 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~- 360 (764)
....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+... .
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 0124788888889999999999999988764210 011 33556666677777777777777777654211 0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004273 361 PQDSTIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 391 (764)
....++..+...|.+.|++++|...+++...
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0122344555566666666666666655543
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=1.1e-09 Score=109.89 Aligned_cols=220 Identities=9% Similarity=0.006 Sum_probs=176.9
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhh-------CCCCh-------hHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCA-------RSPDP-------LFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
++|+..|++..... +.++..|..+...+. +.|++ ++|+.+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67889999998865 556677777777664 35776 8999999999983124466789999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCh-h-hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhccChhH
Q 004273 135 GGYLEEASNLIYFLGERYGIYPIL-P-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA-VWQKNLSA 211 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~-~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~ 211 (764)
.|++++|..+|++..+. .|+. . +|..+...+.+.|++++|..+|+...+... ++...|....... ...|+.+.
T Consensus 112 ~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999753 4543 3 799999999999999999999999998643 2344444333322 23699999
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh-hcccchhcccccccccccccCCCccCCcccchh
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|.++|+...+..+.+...|..++..+.+.|+.+.|..+|++..+.. +.|+..
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--------------------------- 240 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--------------------------- 240 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC---------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH---------------------------
Confidence 9999999999888899999999999999999999999999999852 343311
Q ss_pred hhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
...|..++....+.|+.+.|..+++++.+.
T Consensus 241 --~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 --GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp --HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 148888999999999999999999999875
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=1.2e-07 Score=104.08 Aligned_cols=457 Identities=10% Similarity=0.008 Sum_probs=260.3
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC---HHHHHH
Q 004273 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS---MVHANL 179 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 179 (764)
....+..++..+..+ +-|...|..++..+.+.+.++.|..+|+++.... +.....|..-+..-.+.|+ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 444566677777765 6789999999999999999999999999998764 4455678888888888888 999999
Q ss_pred HHHHHHhcC-CCCChhhHHHHHHHHHhccCh--------hHHHHHHHHHHcc--C--CCCHHhHHHHHHHhh--------
Q 004273 180 CLDLMDSRM-VGKNEVTYTELLKLAVWQKNL--------SAVHEIWEDYIKH--Y--SLSIFSLRKFVWSFT-------- 238 (764)
Q Consensus 180 ~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~--~--~~~~~~~~~li~~~~-------- 238 (764)
+|++..... ..|+...|..-+......++. +.+.++|+..... . +.+...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999999863 137888888877766665554 3455778877753 3 334567777766543
Q ss_pred -ccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHH
Q 004273 239 -RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317 (764)
Q Consensus 239 -~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 317 (764)
..++++.+.++|+++.. .|..... .+|.. |.
T Consensus 205 eeq~~~~~~R~iy~raL~---iP~~~~~----------------------------~~w~~-----------------Y~ 236 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC---QPMDCLE----------------------------SMWQR-----------------YT 236 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT---SCCSSHH----------------------------HHHHH-----------------HH
T ss_pred HHHhHHHHHHHHHHHHHh---CccHHHH----------------------------HHHHH-----------------HH
Confidence 23356677778877764 1221000 12221 11
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC---Cch-hHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 004273 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN--NLK---PQD-STIATLSVECSKAL-ELDLAEALLDQIS 390 (764)
Q Consensus 318 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~-~~~~~li~~~~~~g-~~~~A~~~~~~~~ 390 (764)
..... + +..+...++.- ...++..|...+.++... ++. |.. .+.. ....-..+ .......+
T Consensus 237 ~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~l----- 304 (679)
T 4e6h_A 237 QWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLI----- 304 (679)
T ss_dssp HHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHH-----
T ss_pred HHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHHHH-----
Confidence 11110 0 11111111111 112333444444443221 111 000 0000 00000000 00011111
Q ss_pred hCCCCcchHHHHHHHhcCC-------CHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHH
Q 004273 391 RCTNPKPFSAFLAACDTMD-------KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463 (764)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g-------~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (764)
|...+.---..+ ..+.+..+|++...-+.-+...|
T Consensus 305 -------W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW------------------------------- 346 (679)
T 4e6h_A 305 -------WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIW------------------------------- 346 (679)
T ss_dssp -------HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH-------------------------------
T ss_pred -------HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHH-------------------------------
Confidence 112221111111 12334556666554111111111
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHH-HHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC-
Q 004273 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELI-QYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG- 539 (764)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g- 539 (764)
-..+..+...|+.++|. ++|+.. ..+.+...|-..+...-+.|++++|..+|+++.+..
T Consensus 347 -----------------~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 347 -----------------FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp -----------------HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11122222233334443 444332 122344456666666677777777777777776531
Q ss_pred --------CCCC------------HHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHH
Q 004273 540 --------IPPN------------AATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDY-GDFDE 597 (764)
Q Consensus 540 --------~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~-g~~~~ 597 (764)
-.|+ ...|...+....+.|+.+.|..+|..+.+. +. +....|...+..-.+. ++.+.
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHH
Confidence 0142 235777777777889999999999999876 21 2233343333333344 45899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004273 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP--DPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
|.++|+...+. ++-+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+..+.+++
T Consensus 489 Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 489 ACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998875 45567788888888888999999999999998643222 2346667777778899999999999988
Q ss_pred HHhh
Q 004273 676 SMRM 679 (764)
Q Consensus 676 ~~~~ 679 (764)
....
T Consensus 568 ~~~~ 571 (679)
T 4e6h_A 568 FEKF 571 (679)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 7643
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=4.4e-10 Score=116.93 Aligned_cols=302 Identities=10% Similarity=-0.025 Sum_probs=200.3
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHH--HHHHHhcCCcchHH-----------HHHHHhhhccC
Q 004273 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQ--IVDALCRGERSRAS-----------HLLLNLGHAHH 83 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~--i~~~~~~~~~~~A~-----------~~~~~~~~~~~ 83 (764)
+.+.+++++|. .+.+++. ..+..+ .-+++ ...+..+ .+...-.+..+.+. +.++.+....
T Consensus 22 ~i~~~~~~~A~-~l~~~i~--~~~~~~-~~~~~--~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~- 94 (383)
T 3ulq_A 22 YIRRFSIPDAE-YLRREIK--QELDQM-EEDQD--LHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ- 94 (383)
T ss_dssp HHHTTCHHHHH-HHHHHHH--HHHHTS-CCCHH--HHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT-
T ss_pred HHHHcCHHHHH-HHHHHHH--HHHHhh-ccchH--HHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC-
Confidence 66788899998 5555441 212111 11222 2222221 22222234444444 7777765432
Q ss_pred CCCcchH------HHHHHHhhCCCChhHHHHHHHHHHHc----Cccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004273 84 SLGADDF------FHILNYCARSPDPLFVMETWRMMEEK----EIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 84 ~~~~~~~------~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
.+...+ ......+...|+++.|.+.+++..+. +-++ ...++..+...|...|++++|...+++..+..
T Consensus 95 -~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 95 -ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY 173 (383)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111222 22556677889999999999999874 2122 34678899999999999999999998876532
Q ss_pred CCCCC-----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhccChhHHHHHHHHHHc-
Q 004273 153 GIYPI-----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKNLSAVHEIWEDYIK- 221 (764)
Q Consensus 153 ~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~- 221 (764)
.-.++ ..+++.+...|...|++++|+..|+...+.... ++ ..++..+...|...|++++|.+.+++..+
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 21222 347888999999999999999999987754111 11 23777888899999999999999999987
Q ss_pred ----cC-CCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004273 222 ----HY-SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 222 ----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
+. +....++..+..+|.+.|++++|...+++..+.......+.. ...+
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~ 306 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY---------------------------LSEF 306 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------------------------HHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------------------------HHHH
Confidence 44 455678999999999999999999999998874322111100 1246
Q ss_pred HHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 297 SDVIHACGRTQN---SGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 297 ~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
+.+...+...|+ +++|+.++++. +..|+ ...+..+...+...|++++|...+++..+
T Consensus 307 ~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 307 EFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788888888 66666666654 22222 23455666677777888888777777654
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.2e-09 Score=100.23 Aligned_cols=167 Identities=8% Similarity=-0.042 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
++.+|..+...|...|++++|++.|++..+.+ +-+..+|..+...|.+.|++++|+..+......... +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 44556666666666666666666666665443 223445666666666666666666666666554322 344444455
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
..+...++++.+.+.+....+..+.+...+..+..+|.+.|++++|++.|++..+ ..|+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~------------------ 140 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGF------------------ 140 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchh------------------
Confidence 5556666666666666666665666666666666667777777777777776665 34433
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
..+|..+..+|.+.|++++|++.|++..+.
T Consensus 141 ------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 141 ------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 146666666677777777777777666653
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=6.5e-10 Score=102.01 Aligned_cols=170 Identities=11% Similarity=-0.057 Sum_probs=130.4
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 165 (764)
++..|..+...+...|+++.|++.|++.++.+ +-+..++..+...|.+.|++++|...++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45567777888888888888888888887764 4466677788888888888888888888776543 23445666677
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH
Q 004273 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
..+...++++.|...+.......+ .+...+..+...+...|++++|.+.+++..+..+.+..++..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 777778888888888888776532 2566677777788888888888888888888778888888889999999999999
Q ss_pred HHHHHHHHHHhhhccc
Q 004273 246 AYETLQHMVALAMMGK 261 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~ 261 (764)
|++.|++..+ +.|+
T Consensus 160 A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHH--TTHH
T ss_pred HHHHHHHHHh--CCcc
Confidence 9999999887 4444
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=4.9e-09 Score=105.11 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHcCccccHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHhhhcCCCC-ChhhhHHHHHHH
Q 004273 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALC-------KGGYL-------EEASNLIYFLGERYGIYP-ILPVYNSFLGAC 168 (764)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~ 168 (764)
+.|..+|++.++.. +.++..|..++..+. +.|++ ++|..+|++..+. +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 67888999988864 557778888877775 35775 8999999988752 234 445888899999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCh-h-hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh-ccCCHHH
Q 004273 169 AKLHSMVHANLCLDLMDSRMVGKNE-V-TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-RLRDLKS 245 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 245 (764)
.+.|++++|..+|++..+. .|+. . .|..+...+.+.|++++|..+|+...+..+.+...|........ ..|+.+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999874 4543 2 68888888888888888888888888766666666655444422 3688888
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-C
Q 004273 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-L 324 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~ 324 (764)
|..+|++..+ ..|+. ...|..++..+.+.|++++|..+|++..... +
T Consensus 188 A~~~~~~al~--~~p~~------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 188 AFKIFELGLK--KYGDI------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHHHHHH--HHTTC------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 8888888877 33433 1477788888888888888888888887753 3
Q ss_pred CCC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004273 325 QPS--SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 325 ~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
.|+ ...|..++....+.|+.+.|..+++.+.+..
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 443 3356666666677777777777777776643
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=2.3e-10 Score=122.13 Aligned_cols=214 Identities=7% Similarity=-0.154 Sum_probs=181.1
Q ss_pred cchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCCh-hHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004273 68 RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDP-LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY 146 (764)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 146 (764)
+++++..++...... +.+...+..+..++...|++ +.|++.|++..+.+ +.+...|..+...|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566677777665543 34667788888999999999 99999999999875 4567899999999999999999999999
Q ss_pred HHhhhcCCCCChhhhHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------cCh
Q 004273 147 FLGERYGIYPILPVYNSFLGACAKL---------HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ--------KNL 209 (764)
Q Consensus 147 ~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------~~~ 209 (764)
+..+. .|+...+..+...|... |++++|+..|++..+..+. +...|..+..++... |++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 98754 47778899999999999 9999999999999886433 577888888889888 999
Q ss_pred hHHHHHHHHHHccCC---CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcc
Q 004273 210 SAVHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
++|.+.|+...+..+ .+...|..+..+|...|++++|...|++..+ ..|+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~------------------------ 291 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAW------------------------ 291 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------------
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC------------------------
Confidence 999999999998766 7899999999999999999999999999988 55554
Q ss_pred cchhhhHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 319 (764)
...+..+...+...|++++|++.+.++
T Consensus 292 ------~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 ------PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 147888888888889998888765443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=1e-10 Score=117.72 Aligned_cols=240 Identities=8% Similarity=-0.112 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc-------cCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc------
Q 004273 50 SISKATQMQIVDALCRGERSRASHLLLNLGHA-------HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------ 116 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 116 (764)
.....+..+...+...|++++|+..|+++.+. ..+.....+..+...+...|+++.|.+.+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44566777788889999999999999998763 22333456788888899999999999999988865
Q ss_pred Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc--
Q 004273 117 EI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY-----GI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSR-- 187 (764)
Q Consensus 117 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 187 (764)
+- +....++..+...|...|++++|...|++..+.. +. +....++..+...+...|++++|+..|+...+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 3345678889999999999999999999886532 11 223456888888999999999999999888764
Q ss_pred ----CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHcc--------CCCCH-H------hHHHHHHHhhccCCHHHHH
Q 004273 188 ----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH--------YSLSI-F------SLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 188 ----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~-~------~~~~li~~~~~~g~~~~A~ 247 (764)
+-.| ...++..+...+...|++++|.+.++.+.+. ..+.. . .+..+...+...+.+..+.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1122 2346677777888889999998888887752 11111 1 1111222222333333333
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
..+..... ..|.. ..+|..+...|.+.|++++|.+.|++..+
T Consensus 265 ~~~~~~~~--~~~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKV--DSPTV------------------------------TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----------CHHH------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCC--CCchH------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33433332 11111 25888999999999999999999998765
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=1.6e-09 Score=112.65 Aligned_cols=301 Identities=6% Similarity=-0.090 Sum_probs=181.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCC--CCcch--HHHHHHHh--hCCCChhHHH-----------HHHHHHHHcCcccc
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHS--LGADD--FFHILNYC--ARSPDPLFVM-----------ETWRMMEEKEIGLN 121 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~--~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~ 121 (764)
-..+.+.+++++|..+++++.+.-.. .+... |..++..- ...++.+.+. +.++.+.....+.+
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~ 98 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT 98 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCch
Confidence 44577899999999999998654211 23322 33333221 1113333333 66666654321111
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-C-
Q 004273 122 N----KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-K- 191 (764)
Q Consensus 122 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p- 191 (764)
. ..+......+...|++++|...|++..+...-.++ ..+|..+...|...|+++.|+..++...+.-.. +
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 12223566778899999999999988653211122 357888889999999999999999887653111 1
Q ss_pred ----ChhhHHHHHHHHHhccChhHHHHHHHHHHccC--CCC----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhccc
Q 004273 192 ----NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY--SLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 192 ----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 261 (764)
...++..+...|...|++++|.+.+....+.. .++ ..++..+..+|...|++++|.+.|++..+......
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 13466777778888999999999888887631 121 24788888888899999999998888876311111
Q ss_pred c-hhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC-cccHHHHHH
Q 004273 262 L-YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL---QPS-SHTYDGFIR 336 (764)
Q Consensus 262 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~-~~t~~~li~ 336 (764)
. +.. ..++..+...+.+.|++++|...+++..+... .|. ...+..+-.
T Consensus 259 ~~~~~---------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 259 ILPSL---------------------------PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp CGGGH---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchhH---------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 000 15788888888888888888888888664210 111 112344444
Q ss_pred HHHhcCC---hhHHHHHHHHHHHCCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 337 AIVSDRG---LRNGMEVLKIMQQNNLKPQD-STIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 337 ~~~~~~~---~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
.+...|+ +.+|..+++.. +..|+. ..+..+...|...|++++|...|+..
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555565 44444444433 222221 23334555555555555555555544
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=4.4e-11 Score=120.46 Aligned_cols=249 Identities=10% Similarity=-0.024 Sum_probs=171.8
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc--
Q 004273 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-- 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-- 81 (764)
|.....+..++..|...|++++|+ .+++++. +.+....+..+......+..+...+...|++++|+..|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAV-PLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455567888999999999999999 5555442 11111111123344566777788899999999999999998764
Q ss_pred ----c-CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc------Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 82 ----H-HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------EI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 82 ----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
+ .+.....+..+...+...|+++.|.+.+++..+. +. +.....+..+...|...|++++|+++|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1223456888889999999999999999998875 22 2345678889999999999999999999886
Q ss_pred hhc-----C-CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCChh-------hHHHHHHHHHhccCh
Q 004273 150 ERY-----G-IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR-------MVGKNEV-------TYTELLKLAVWQKNL 209 (764)
Q Consensus 150 ~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-------t~~~ll~~~~~~~~~ 209 (764)
+.. + .+....++..+...|.+.|++++|...|+.+.+. ...+... .+..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 531 1 1223457888999999999999999999998763 1122222 122223334445566
Q ss_pred hHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.++...+.......+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777777666667788899999999999999999999999887
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=8e-10 Score=117.98 Aligned_cols=211 Identities=12% Similarity=-0.023 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH-HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHH
Q 004273 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL-EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 181 (764)
++.+++.++...... +.+...+..+...|...|++ ++|++.|++..+.+ +.+...|..+...|.+.|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556667777655543 44778889999999999999 99999999997654 234678999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhc---------cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc--------CCHH
Q 004273 182 DLMDSRMVGKNEVTYTELLKLAVWQ---------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL--------RDLK 244 (764)
Q Consensus 182 ~~m~~~g~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 244 (764)
+...+. .|+..++..+...+... |++++|.+.+++..+..+.+...|..+..+|... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999986 47778888888899999 9999999999999998888999999999999999 9999
Q ss_pred HHHHHHHHHHHhhhcc---cchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 245 SAYETLQHMVALAMMG---KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 245 ~A~~~~~~m~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+|...|++..+ +.| +. ...|..+...|...|++++|.+.|++..+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSN------------------------------PDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcccC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998 445 32 15899999999999999999999999987
Q ss_pred CCCCCC-cccHHHHHHHHHhcCChhHHHHHHH
Q 004273 322 LGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 322 ~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~ 352 (764)
.. |+ ...+..+...+...|++++|...+.
T Consensus 287 l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 287 LD--PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hC--CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53 43 4456777777777887777776543
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=3.6e-09 Score=109.69 Aligned_cols=305 Identities=9% Similarity=-0.010 Sum_probs=195.4
Q ss_pred hhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHH---------HHHHHhhhccCCCCcc
Q 004273 18 CKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRAS---------HLLLNLGHAHHSLGAD 88 (764)
Q Consensus 18 ~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~---------~~~~~~~~~~~~~~~~ 88 (764)
.+.++.++|. .+.+++. ..+..+ +-+++...+......+...-.+....+. +.++.+.....+.+..
T Consensus 23 i~~~~~~~A~-~l~~~i~--~~~~~~-~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 98 (378)
T 3q15_A 23 IRQFSVPDAE-ILKAEVE--QDIQQM-EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL 98 (378)
T ss_dssp HHTTCHHHHH-HHHHHHH--HHGGGB-CCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHH
T ss_pred HHHcCHHHHH-HHHHHHH--HHHHHh-cccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccH
Confidence 7788899998 6655441 222222 1223322111111122222234444444 6666665432111111
Q ss_pred ----hHHHHHHHhhCCCChhHHHHHHHHHHHcCc----c-ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC---
Q 004273 89 ----DFFHILNYCARSPDPLFVMETWRMMEEKEI----G-LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP--- 156 (764)
Q Consensus 89 ----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 156 (764)
.+......+...|+++.|+..+++..+.-. . ....++..+...|...|+++.|...+++..+...-.+
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 123344556688999999999999886421 1 1345788899999999999999999988754322112
Q ss_pred --ChhhhHHHHHHHhccCCHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhccChhHHHHHHHHHHc-----cCC
Q 004273 157 --ILPVYNSFLGACAKLHSMVHANLCLDLMDSR----MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-----HYS 224 (764)
Q Consensus 157 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~ 224 (764)
...+++.+...|...|++++|++.|+...+. +-. ....++..+...+...|++++|.+.++...+ +.+
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 2347888999999999999999999887653 111 1234677788889999999999999999987 555
Q ss_pred CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH
Q 004273 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
....++..+..+|.+.|++++|...+++..+.......+.. ...++.+...+.
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~~~l~~ly~ 311 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY---------------------------KELFLFLQAVYK 311 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH---------------------------HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------------------------HHHHHHHHHHHh
Confidence 56788999999999999999999999999874322111000 135566666777
Q ss_pred ccCC---HHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 305 RTQN---SGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 305 ~~g~---~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
..++ +.+|+..+++ .+..|+. ..+..+...+...|++++|...|+...+
T Consensus 312 ~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777 6666666665 2222222 2344556666677777777777766543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=3e-08 Score=102.55 Aligned_cols=168 Identities=14% Similarity=0.031 Sum_probs=95.6
Q ss_pred HHHHHHhccChhHHHHHHHHHHccCC-----CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccc
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIKHYS-----LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 273 (764)
+...+...|++++|...++......+ ....++..+...+...|++++|...+++..+....++.+..
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~-------- 212 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD-------- 212 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh--------
Confidence 33344444555555555444443111 12245666777888889999999998888764222221000
Q ss_pred ccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCChhHHHHH
Q 004273 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS---HTYDGFIRAIVSDRGLRNGMEV 350 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~ 350 (764)
.........+..+...|++++|...+++.......+.. ..+..+...+...|++++|...
T Consensus 213 -----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 275 (373)
T 1hz4_A 213 -----------------WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV 275 (373)
T ss_dssp -----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00001113344577899999999999887654321111 1345566777788888888888
Q ss_pred HHHHHHC----CCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004273 351 LKIMQQN----NLKPQD-STIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 351 ~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 391 (764)
++..... |..++. .++..+...+...|+.++|...+++...
T Consensus 276 l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 276 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8776542 221122 1344555666667777777766666543
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.08 E-value=4.1e-09 Score=96.46 Aligned_cols=163 Identities=11% Similarity=-0.095 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|.+.++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4445555666777777777777777776554 3344556666666666677777777777666653 3345566666666
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++...+... .+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665432 23344555555556666666666666665554321 123333344444444444444
Q ss_pred HHHHHHHH
Q 004273 212 VHEIWEDY 219 (764)
Q Consensus 212 a~~~~~~~ 219 (764)
|.+.++.+
T Consensus 163 A~~~~~~~ 170 (186)
T 3as5_A 163 ALPHFKKA 170 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=4.1e-08 Score=101.74 Aligned_cols=236 Identities=7% Similarity=-0.044 Sum_probs=151.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHH
Q 004273 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 311 (764)
.....+...|+++.|...|++..+........ .....++..+...|...|+++.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~a~~~~~lg~~y~~~~~~~~ 159 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--------------------------IEKAEFHFKVAEAYYHMKQTHV 159 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--------------------------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--------------------------HHHHHHHHHHHHHHHHcCCcHH
Confidence 34445677888888888888877632211110 0012577788888888888888
Q ss_pred HHHHHHHHHHCCC-----CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CchhHHHHHHHHHHhcCCHH
Q 004273 312 AEQLMLQMQSLGL-----QP-SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN----NLK-PQDSTIATLSVECSKALELD 380 (764)
Q Consensus 312 a~~~~~~m~~~g~-----~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~ 380 (764)
|...+.+..+... .+ ...+++.+...+...|++++|...|.+..+. +-. ....++..+...|...|+++
T Consensus 160 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 8888887764210 11 1345667777888888888888888877653 111 12235667888899999999
Q ss_pred HHHHHHHHHhh-----CC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhh
Q 004273 381 LAEALLDQISR-----CT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452 (764)
Q Consensus 381 ~A~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 452 (764)
+|...|++... .. ...++..+...|.+.|++++|...+++..+ ....+...+
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------- 299 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-------------------- 299 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH--------------------
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH--------------------
Confidence 99999988766 32 344567788889999999999999998876 211111111
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCc---HHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCChhHH
Q 004273 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGT-PTYNTVLHSLVEAQESHRA 528 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A 528 (764)
...+..+...|...++ +.+|+..+++....++. ..+..+...|...|++++|
T Consensus 300 ------------------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 355 (378)
T 3q15_A 300 ------------------------KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355 (378)
T ss_dssp ------------------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHH
Confidence 1112223344555555 66777777665333332 2455667777777777777
Q ss_pred HHHHHHHHh
Q 004273 529 MEIFKQMKT 537 (764)
Q Consensus 529 ~~l~~~m~~ 537 (764)
...|++..+
T Consensus 356 ~~~~~~al~ 364 (378)
T 3q15_A 356 AAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776643
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.05 E-value=1.2e-08 Score=93.41 Aligned_cols=163 Identities=10% Similarity=-0.055 Sum_probs=97.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44455555666666666666666554321 2344455666666666666666666666665542 12445555555666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccC
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
...|++++|.+.++.+.+..+.+...+..+..++...|++++|...++++.+. .|+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~--------------------- 143 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNE--------------------- 143 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--Cccc---------------------
Confidence 66666666666666666655556666666666666677777777777666652 2222
Q ss_pred CcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
...|..+...+...|++++|...+++..+
T Consensus 144 ---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 ---------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13566666666667777777766666654
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=1.5e-09 Score=107.37 Aligned_cols=236 Identities=11% Similarity=-0.055 Sum_probs=163.3
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc------cC-CCCcch
Q 004273 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA------HH-SLGADD 89 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~ 89 (764)
....|++++|+ .++++.. +.+....+..+......+..+...+...|++++|+..|++.... +. +.....
T Consensus 11 ~~~~~~~~~A~-~~~~~al--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (283)
T 3edt_B 11 SSGLVPRGSAV-PLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT 87 (283)
T ss_dssp --CCSCSSSHH-HHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred cCCCCCHHHHH-HHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 45678889998 5555543 44444544454455667778888899999999999999998754 21 223456
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC-------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----C-CCC
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKE-------IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY-----G-IYP 156 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~ 156 (764)
+..+..++...|+++.|.+.+++..+.. .+....++..+...|...|++++|...|++..+.. + .+.
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 8889999999999999999999988751 13346688899999999999999999999886530 1 122
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCChhhHHHHHH-HHHhccChh------HHHHHHHHHHcc
Q 004273 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSR-------MVGKNEVTYTELLK-LAVWQKNLS------AVHEIWEDYIKH 222 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~-~~~~~~~~~------~a~~~~~~~~~~ 222 (764)
...++..+...|.+.|++++|...|+...+. ...+....+...+. .....+... .+...+......
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 3457888999999999999999999988763 12333333333333 333323322 222222222222
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.+....++..+..+|...|++++|..+|++..+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344456788999999999999999999998875
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.03 E-value=5e-08 Score=100.87 Aligned_cols=268 Identities=9% Similarity=-0.035 Sum_probs=177.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCh----hhHHH
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNE----VTYTE 198 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 198 (764)
....+...|++++|...+++.....+. .+. .+++.+...+...|++++|...+++....... ++. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334455667777777777766543211 111 13455566667777777777777766542111 111 22445
Q ss_pred HHHHHHhccChhHHHHHHHHHHcc-----CC--C-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccc
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIKH-----YS--L-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 270 (764)
+...+...|++++|.+.++...+. .+ | ....+..+..++...|++++|...+++..+........
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------- 171 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------- 171 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-------
Confidence 556677788888888888777652 11 2 34567778889999999999999999988733221110
Q ss_pred cccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHH-----HHHHHHHhcCCh
Q 004273 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYD-----GFIRAIVSDRGL 344 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~-----~li~~~~~~~~~ 344 (764)
. ...+|..+...+...|++++|...+++.......++. ..+. .....+...|++
T Consensus 172 ------------------~--~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 172 ------------------Q--QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp ------------------G--GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------H--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 0 0147888899999999999999999998754222222 1122 222346789999
Q ss_pred hHHHHHHHHHHHCCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------C-CcchHHHHHHHhcCCCHHH
Q 004273 345 RNGMEVLKIMQQNNLKPQ---DSTIATLSVECSKALELDLAEALLDQISRCT-------N-PKPFSAFLAACDTMDKPER 413 (764)
Q Consensus 345 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~~~~li~~~~~~g~~~~ 413 (764)
++|...++........+. ...+..+...+...|++++|...++...... + ...+..+..++...|++++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999998876543221 2245677888999999999999998875431 1 1245556777889999999
Q ss_pred HHHHHHHHhh
Q 004273 414 AIKIFAKMRQ 423 (764)
Q Consensus 414 a~~l~~~m~~ 423 (764)
|...+++...
T Consensus 312 A~~~l~~al~ 321 (373)
T 1hz4_A 312 AQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=8e-09 Score=114.71 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+..+|+.|...|.+.|++++|++.|++..+.+ +-+..+|+.|..+|.+.|++++|+..|++..+.... +..+|..+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34566677777777777777777777665543 223456666777777777777777777776664322 455666666
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004273 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
.++...|++++|.+.|++..+-.+.+..+++.+..+|.+.|++++|++.|++..+ +.|+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~------------------ 144 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDF------------------ 144 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC------------------
Confidence 7777777777777777777766666777777777777777777777777777776 45554
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
...|..+...+...|++++|.+.+++..+
T Consensus 145 ------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 145 ------------PDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ------------hHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 14677777777777777777777766543
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=9.9e-09 Score=113.97 Aligned_cols=164 Identities=11% Similarity=-0.020 Sum_probs=95.4
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 167 (764)
..|+.+..++.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.+ +-+...|+.+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 345555555555666666666666655543 2344555566666666666666666666554432 1233455556666
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH
Q 004273 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
|.+.|++++|++.|++..+.... +..+|..+..++...|++++|.+.|++..+..+.+...+..+..+|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 66666666666666665554221 34455556666666666666666666666655556666666666666667766666
Q ss_pred HHHHHHHH
Q 004273 248 ETLQHMVA 255 (764)
Q Consensus 248 ~~~~~m~~ 255 (764)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=1e-08 Score=101.17 Aligned_cols=160 Identities=10% Similarity=-0.108 Sum_probs=104.6
Q ss_pred HHhcCCcchHHHHHHHhhhc-------cCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc------Cc-cccHHHHHH
Q 004273 62 ALCRGERSRASHLLLNLGHA-------HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------EI-GLNNKCYLL 127 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 127 (764)
....|++++|+..|++..+. +.+.....+..+...+...|+++.|.+.+++..+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567788888877776542 11223445777777888888888888888887764 21 234557777
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhc-----C-CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc------CCCC-Chh
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERY-----G-IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR------MVGK-NEV 194 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~ 194 (764)
+...|...|++++|...|++..+.. . .+....++..+...|...|++++|+..|+...+. +-.| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888888888888888888775431 1 1223456777777888888888888888777654 1112 234
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
++..+...+...|++++|.+.++...+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666777777777777766654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=3.2e-08 Score=94.26 Aligned_cols=198 Identities=9% Similarity=-0.133 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+..|++..+...+++...+..+..++...|+++.|++.+++..+.+ +.+...|..+...|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 55666777888999999999999999887743677777778888999999999999999999875 44677889999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCCh-----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYPIL-----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN---EVTYTELLKLAV 204 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~ 204 (764)
...|++++|+..|++..+..+-.+.. ..|..+...+.+.|++++|+..|+...+. .|+ ...+..+...+.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 99999999999999987654221111 45777888888999999999999999875 455 345556666665
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..| ..+++.+......+...|.... ....+.+++|...|++..+ +.|+.
T Consensus 165 ~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCC
Confidence 433 3445555544444455554443 3345678999999999998 56655
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=4.9e-08 Score=92.90 Aligned_cols=183 Identities=10% Similarity=-0.104 Sum_probs=99.6
Q ss_pred hhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC
Q 004273 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 117 (764)
..|...+...|.+....+..+...+...|++++|+..|++..+.+ +-+...+..+..++...|+++.|++.+++..+..
T Consensus 28 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 28 EKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 445555555552223333345566666777777777777766554 2334456666666777777777777777776653
Q ss_pred ccccH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 118 IGLNN-------KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI---LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 118 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+.+. ..|..+...+...|++++|++.|++..+. .|+ ...|..+...|...| ..+++.+...
T Consensus 107 -p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~ 177 (228)
T 4i17_A 107 -PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPL 177 (228)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGG
T ss_pred -CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhc
Confidence 2233 34566666666777777777777766543 233 345555555554433 2333444433
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHH
Q 004273 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+ ..+...|.... ....+.+++|...++...+..|.+..+...+
T Consensus 178 ~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 178 A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2 11233333322 2234556666666666666555454444333
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=1.7e-07 Score=90.82 Aligned_cols=182 Identities=12% Similarity=-0.031 Sum_probs=140.9
Q ss_pred HHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 71 ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 71 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
|+..|+++...+ +++...+..+..++...|++++|++++.+.+..|- .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788898887765 45556666778888889999999999999877652 2366788889999999999999999999996
Q ss_pred hhcCCCC-----ChhhhHHHHHH--HhccC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHH
Q 004273 150 ERYGIYP-----ILPVYNSFLGA--CAKLH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 150 ~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
+. .| +..+...|..+ ....| +..+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54 45 24455555555 33334 899999999999775 4554455566668999999999999999877
Q ss_pred cc----------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 221 KH----------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 221 ~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+. .+.++.++..+|......|+ .|.++++++.+ ..|+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 64 26678888777777777787 88999999998 66665
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=2.1e-07 Score=92.21 Aligned_cols=185 Identities=7% Similarity=-0.150 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCCC-hhhhHHHHHHHhccCCHHHHH
Q 004273 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---GIYPI-LPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~ 178 (764)
++.|.+.|++. ...|...|++++|...|++..+.. +-+++ ..+|+.+..+|.+.|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 334556677777777766554321 11111 235566666666666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-CCHHHHHHHHHHHHHhh
Q 004273 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVALA 257 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~ 257 (764)
..|+...+. +...|+...+ ..+++.+..+|... |++++|+..|++..+..
T Consensus 98 ~~~~~Al~l---------------~~~~g~~~~~--------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 98 DSLENAIQI---------------FTHRGQFRRG--------------ANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (292)
T ss_dssp HHHHHHHHH---------------HHHTTCHHHH--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHcCCHHHH--------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 666554431 1111222211 23566777888885 99999999999988732
Q ss_pred hcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc------cH
Q 004273 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH------TY 331 (764)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~ 331 (764)
...+.. .....+|+.+...+.+.|++++|+..|++..+........ +|
T Consensus 149 ~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 149 AQDQSV--------------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HhCCCh--------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 211110 0001478889999999999999999999998864322221 35
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 004273 332 DGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 332 ~~li~~~~~~~~~~~a~~~~~~m~~~ 357 (764)
..+..++...|++++|...|++..+.
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56666777888888888888887764
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=2.1e-07 Score=79.61 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=85.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...|+.+...+. .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 34555666666677777777766665432 22445566666666666777777777766665432 2445566666666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...|++++|.+.++.+.+..+.+...+..+..++.+.|++++|...|+++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777666666667777777788888888888888888776
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=1.5e-07 Score=91.77 Aligned_cols=187 Identities=11% Similarity=0.036 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC---cchHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLG---ADDFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLL 127 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 127 (764)
..+......+...|++++|+..|+++.... +-+ ...+..+..++.+.|+++.|+..|+...+... +.....+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 444455677888899999999999888765 222 45577777888888889999999888888631 122456667
Q ss_pred HHHHHHc--------cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 004273 128 MMQALCK--------GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 128 li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
+..++.. .|++++|+..|+++.+..+- +......+.. +...... -...+..+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 7777777 88888888888888765421 2122222110 1110000 00113445
Q ss_pred HHHHHhccChhHHHHHHHHHHccCCC---CHHhHHHHHHHhhcc----------CCHHHHHHHHHHHHHhhhcccc
Q 004273 200 LKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFVWSFTRL----------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
...+...|++++|...|+.+.+..+. ....+..+..+|... |++++|...|+++.+ ..|+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 55666777777777777777765433 344666667777655 888889999988887 44544
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.79 E-value=7.3e-07 Score=86.44 Aligned_cols=250 Identities=8% Similarity=-0.066 Sum_probs=164.0
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH
Q 004273 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI 93 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (764)
+.-.+-.|.+..++ .-.. ++.|+.......-+.+++...|+++... ...|....+..+
T Consensus 20 ikn~fy~G~yq~~i-~e~~------------~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~l 77 (310)
T 3mv2_B 20 IKQNYYTGNFVQCL-QEIE------------KFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLY 77 (310)
T ss_dssp HHHHHTTTCHHHHT-HHHH------------TSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHH
T ss_pred HHHHHHhhHHHHHH-HHHH------------hcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHH
Confidence 44455577777777 2111 1222222233334568899999887531 112332233333
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004273 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
.. |...+ |+..+++..+.+ +++...+..+..++...|++++|++++.+......-.-+...+..++..+.+.|+
T Consensus 78 a~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 78 VQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp HH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC
T ss_pred HH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC
Confidence 33 33322 678888887765 4566666788899999999999999999875432111255678889999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-----ChhhHHHHHHH--HHhcc--ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH
Q 004273 174 MVHANLCLDLMDSRMVGK-----NEVTYTELLKL--AVWQK--NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
.+.|.+.++.|.+. .| +..+...|..+ ....| ++..|..+|+++.... |+..+...++.++.+.|+++
T Consensus 152 ~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 152 VSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp HHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcCCHH
Confidence 99999999999885 56 35666666666 33334 8999999999987654 44333344455899999999
Q ss_pred HHHHHHHHHHHhhh--------cccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHH
Q 004273 245 SAYETLQHMVALAM--------MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316 (764)
Q Consensus 245 ~A~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 316 (764)
+|.+.++.+.+... .|+.+ .+.-.+|......|+ .|.+++
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~------------------------------~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKP------------------------------TFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHH------------------------------HHHHHHHHHHHHTTC--TTHHHH
T ss_pred HHHHHHHHHHHhcccccccccCCCCCH------------------------------HHHHHHHHHHHHhCh--HHHHHH
Confidence 99999997765311 24331 355445544555566 788888
Q ss_pred HHHHHCCCCCCc
Q 004273 317 LQMQSLGLQPSS 328 (764)
Q Consensus 317 ~~m~~~g~~p~~ 328 (764)
.++.+. .|+.
T Consensus 277 ~qL~~~--~P~h 286 (310)
T 3mv2_B 277 NQLVKL--DHEH 286 (310)
T ss_dssp HHHHHT--TCCC
T ss_pred HHHHHh--CCCC
Confidence 888875 3444
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.78 E-value=1.5e-07 Score=93.38 Aligned_cols=205 Identities=7% Similarity=-0.025 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHhhhc----cCCCC-cchHHHHHHHhhCCCChhHHHHHHHHHHHcCc---cc--
Q 004273 51 ISKATQMQIVDALCRGERSRASHLLLNLGHA----HHSLG-ADDFFHILNYCARSPDPLFVMETWRMMEEKEI---GL-- 120 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~-- 120 (764)
....+......|...|++++|+..|++.... +.++. ...|+.+..+|...|+++.|+..+++..+... .+
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3344555566788899999999999987654 21111 45688999999999999999999998876421 11
Q ss_pred cHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-
Q 004273 121 NNKCYLLMMQALCKG-GYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV- 194 (764)
Q Consensus 121 ~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 194 (764)
-..+++.+...|... |++++|+..|++..+...-..+ ..+++.+...+.+.|++++|+..|+...+..+.....
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 135788899999996 9999999999987653211111 3468889999999999999999999999865433221
Q ss_pred -----hHHHHHHHHHhccChhHHHHHHHHHHccCCCCH-----HhHHHHHHHhh--ccCCHHHHHHHHHHHHH
Q 004273 195 -----TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI-----FSLRKFVWSFT--RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 -----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 255 (764)
+|..+..++...|++++|...++...+-.+... ..+..++.++. ..++++.|+..|+.+.+
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 466777788899999999999999987432221 23455566664 45678888888877654
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.78 E-value=1.6e-07 Score=91.43 Aligned_cols=80 Identities=6% Similarity=-0.039 Sum_probs=60.8
Q ss_pred hhhccccCCchhhh--HHHHHHHHHHHHhcCCcchHHHHHHHhhhccC-C-CCcchHHHHHHHhhC--------CCChhH
Q 004273 38 RTLTTTMGLNEESI--SKATQMQIVDALCRGERSRASHLLLNLGHAHH-S-LGADDFFHILNYCAR--------SPDPLF 105 (764)
Q Consensus 38 r~~~~~~~~~p~~~--~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~~~~ll~~~~~--------~~~~~~ 105 (764)
..|...+...|+.. ...+..+...+...|++++|+..|++..+... . .....+..+..++.. .|+++.
T Consensus 36 ~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 36 EYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp HHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 56666777666642 44566677889999999999999999988752 1 123456677777777 899999
Q ss_pred HHHHHHHHHHcC
Q 004273 106 VMETWRMMEEKE 117 (764)
Q Consensus 106 a~~~~~~~~~~~ 117 (764)
|+..|+++.+..
T Consensus 116 A~~~~~~~l~~~ 127 (261)
T 3qky_A 116 AIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
Confidence 999999999874
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.76 E-value=3.1e-07 Score=78.57 Aligned_cols=130 Identities=12% Similarity=-0.008 Sum_probs=112.2
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
.|..+...+...|++++|..+|+.+.+... .+..++..+...+...|++++|...++.+.+..+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 567788899999999999999999987643 3667788888889999999999999999998878888899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 240 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 319 (764)
.|++++|.+.++++.+. .|+. ...+..+...+.+.|++++|...|+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRS------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTC------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCC------------------------------hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999873 3332 147888999999999999999999998
Q ss_pred HHC
Q 004273 320 QSL 322 (764)
Q Consensus 320 ~~~ 322 (764)
...
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 764
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=8.8e-07 Score=83.88 Aligned_cols=189 Identities=10% Similarity=-0.060 Sum_probs=115.9
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCcc-c-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIG-L-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNS 163 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 163 (764)
+..+..+...+.+.|+++.|+..|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+..+-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555566677778888888888888775311 1 13466677778888888888888888877654322221 13333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhccChhHHHHHHHHHHccCC
Q 004273 164 FLGACAK------------------LHSMVHANLCLDLMDSRMVGKNEV-TYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 164 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
+..++.+ .|+.++|+..|+.+.+. .|+.. ++....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH-----
Confidence 4444433 35566666666666554 23222 111111000 000000
Q ss_pred CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH
Q 004273 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
......+...|.+.|+++.|+..|+++.+ ..|+.+.. ...+..+..++.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~---------------------------~~a~~~l~~~~~ 195 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQAT---------------------------RDALPLMENAYR 195 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHH---------------------------HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCcc---------------------------HHHHHHHHHHHH
Confidence 00113456678899999999999999988 44443111 136888999999
Q ss_pred ccCCHHHHHHHHHHHHHCC
Q 004273 305 RTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 305 ~~g~~~~a~~~~~~m~~~g 323 (764)
+.|++++|.+.++.+...+
T Consensus 196 ~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 196 QMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HTTCHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHHHHhhC
Confidence 9999999999999998864
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=9.5e-08 Score=86.60 Aligned_cols=167 Identities=10% Similarity=-0.100 Sum_probs=76.6
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC
Q 004273 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH 83 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~ 83 (764)
|.....+...+..+...|++++|. ..|...+...|+. ...+..+...+...|++++|+..|++.....
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~----------~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~- 70 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQAL----------NVIQTLSDELQSR-GDVKLAKADCLLETKQFELAQELLATIPLEY- 70 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHH----------HHHHTSCHHHHTS-HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-
Confidence 334444555556666666666666 3333334444443 2333444455556666666666666655543
Q ss_pred CCCcchHHHHHHH-hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004273 84 SLGADDFFHILNY-CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 84 ~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 162 (764)
|++..+..+... +...+....|+..+++..+.. +.+...+..+...+...|++++|...|+++.+..+-..+...+.
T Consensus 71 -p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 71 -QDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp -CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred -CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 232221111111 111111223455555555442 22344555555555555555555555555543321111233455
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 004273 163 SFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m 184 (764)
.+...+...|+.++|...|++.
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHH
Confidence 5555555555555555555443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=2.2e-07 Score=103.82 Aligned_cols=158 Identities=14% Similarity=0.003 Sum_probs=137.0
Q ss_pred hCCCChhHHHHHHHHHH--------HcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 98 ARSPDPLFVMETWRMME--------EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
...|++++|++.+++.. +.. +.+...+..+...|...|++++|++.|++..+.+ +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999998 432 4566788899999999999999999999997654 335668899999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHH
Q 004273 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
+.|++++|+..|++..+..+. +...+..+-.++...|++++ .+.|++..+..+.+...+..+..++.+.|++++|...
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999986432 56778888889999999999 9999999998889999999999999999999999999
Q ss_pred HHHHHHhhhcccc
Q 004273 250 LQHMVALAMMGKL 262 (764)
Q Consensus 250 ~~~m~~~~~~~~~ 262 (764)
|+++.+ ..|+.
T Consensus 557 ~~~al~--l~P~~ 567 (681)
T 2pzi_A 557 LDEVPP--TSRHF 567 (681)
T ss_dssp HHTSCT--TSTTH
T ss_pred HHhhcc--cCccc
Confidence 999887 45543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=1.3e-07 Score=105.57 Aligned_cols=174 Identities=7% Similarity=-0.116 Sum_probs=146.9
Q ss_pred HhcCCcchHHHHHHHhh--------hccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004273 63 LCRGERSRASHLLLNLG--------HAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 63 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
...|++++|++.+++.. +.. +.+...+..+..++...|+++.|++.|++..+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 433 4556678888889999999999999999999875 4577889999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHH
Q 004273 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 214 (764)
.|++++|+..|++..+.+ +.+...|..+..+|.+.|++++ +..|+...+..+. +...|..+..++...|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999987654 2355688999999999999999 9999999886433 66788889999999999999999
Q ss_pred HHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.|++..+..+.+...+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999998888888899999999877665
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=2.3e-05 Score=83.37 Aligned_cols=125 Identities=10% Similarity=0.086 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
..|-..+....+.++.+.|..+|++. ... .++...|......-. ..++.+.|..+|+...+.. +-++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35666666666677788888888877 321 123334432111111 2236888888888777642 2234456667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
..+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888752 2466777777766777888888777777764
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=6.9e-07 Score=88.13 Aligned_cols=168 Identities=6% Similarity=-0.118 Sum_probs=137.4
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004273 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
+.+...+..+...+...|++++|...|++..+.+ +-+...+..+...+.+.|++++|...|+..... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 5566677788889999999999999999997654 335568888999999999999999999998775 455443333
Q ss_pred HH-HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004273 199 LL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 199 ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.. ..+...++.+.|.+.++...+..|.+...+..+..++...|++++|...|.++.+. .|+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~------------- 254 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAAD------------- 254 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGG-------------
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--cccccc-------------
Confidence 22 23667888899999999999989999999999999999999999999999999984 333200
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
...+..+...+...|+.++|...|++-.
T Consensus 255 ---------------~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 255 ---------------GQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp ---------------GHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 1488999999999999999999888754
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.66 E-value=5.9e-07 Score=89.75 Aligned_cols=205 Identities=12% Similarity=0.005 Sum_probs=120.1
Q ss_pred hcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004273 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
..|++++|.+++++..+... . .+ +...++++.|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~--~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--T--SF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--C--CS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--c--cc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 34667788888887765431 1 11 11146777777776654 346667788888888
Q ss_pred HHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHhccChhHHHH
Q 004273 144 LIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMV---GK--NEVTYTELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 144 ~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~ 214 (764)
.|.+..+...-..+ ..+|+.+...|.+.|++++|+..|++..+.-. .| -..++..+-..|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88766432110001 23667777777777888888777776554211 11 12345555556666 77777777
Q ss_pred HHHHHHccCCC------CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004273 215 IWEDYIKHYSL------SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 215 ~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
.+++..+..+. ...+++.+..+|.+.|++++|+..|++..+........
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------- 191 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY------------------------- 191 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-------------------------
Confidence 77766653111 13456667777777777777777777776522111100
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
......+..+...+...|++++|...|++..
T Consensus 192 -~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 192 -PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0001255556666666677777777777766
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=4.7e-07 Score=84.48 Aligned_cols=163 Identities=7% Similarity=-0.058 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHH----------------HHHHhhCCCChhHHHHHHHHHHHcC
Q 004273 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----------------ILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~ 117 (764)
.+......+...|++++|+..|++....+ |-++..+.. +..++.+.|+++.|+..|++.++.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445667888999999999999988765 223344555 6666777777777777777777764
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HHHHHHHHHHHHhcCCCCChhh
Q 004273 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MVHANLCLDLMDSRMVGKNEVT 195 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 195 (764)
+.+...+..+...|...|++++|+..|++..+.+ +.+..+|..+...|...|+ ...+...+..... +.|....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 4456677777777777777777777777776543 2244566666666654433 3334444444322 1222223
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHcc
Q 004273 196 YTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
+...-.++...|++++|...|++..+.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333344455567777777777776653
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=4.1e-06 Score=82.18 Aligned_cols=227 Identities=6% Similarity=-0.066 Sum_probs=173.6
Q ss_pred HHHHHhhcccc-hhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcC--CcchHHHHHHHhhhccCCCCcch
Q 004273 13 IADSFCKSKFH-KHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRG--ERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 13 ~~~~~~~~g~~-~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 89 (764)
.+....+.|.. ++|+ ..+..++...|+. ...|+..-..+...+ ++++++++++.+...+ +-+...
T Consensus 38 ~~~a~~~~~e~s~~aL----------~~t~~~L~~nP~~-~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~a 105 (306)
T 3dra_A 38 LLLALMKAEEYSERAL----------HITELGINELASH-YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQI 105 (306)
T ss_dssp HHHHHHHTTCCSHHHH----------HHHHHHHHHCTTC-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHH
T ss_pred HHHHHHHcCCCCHHHH----------HHHHHHHHHCcHH-HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHH
Confidence 33344445544 5777 5555667888885 445666666677777 9999999999999876 344455
Q ss_pred HHHHHHHh----hCC---CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH--HHHHHHHHHhhhcCCCCChhh
Q 004273 90 FFHILNYC----ARS---PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE--EASNLIYFLGERYGIYPILPV 160 (764)
Q Consensus 90 ~~~ll~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~ 160 (764)
++.--..+ ... +++++++++++.+.+.+ +.|-.+|+.-.-.+.+.|.++ ++++.++++.+.+ +.|...
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sA 182 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHH
Confidence 55444444 334 78999999999999985 668889988888888889888 9999999998765 356667
Q ss_pred hHHHHHHHhccCC------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC-hhHHHHHHHHHHcc---CCCCHHhH
Q 004273 161 YNSFLGACAKLHS------MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-LSAVHEIWEDYIKH---YSLSIFSL 230 (764)
Q Consensus 161 ~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~---~~~~~~~~ 230 (764)
|+.-...+.+.|. ++++++.++.+....+. |...|+.+-..+.+.|. .+.+..+...+.+. .+.++..+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 7776666666666 89999999999887654 88888888777777776 44566677776653 36788999
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 231 RKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..+..+|.+.|+.++|.++++.+.+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.62 E-value=2.5e-07 Score=81.06 Aligned_cols=144 Identities=6% Similarity=-0.171 Sum_probs=89.5
Q ss_pred HHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH
Q 004273 95 NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 174 (764)
..+...|+++.|++.++...... +.+...+-.+...|.+.|++++|++.|++..+.+ +-+..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 34445566667766666655442 2234455566777777777777777777766543 23455677777777777777
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH-HHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI-WEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 175 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
++|+..|+...+..+. +..++..+...+...|+++++.+. ++...+-.|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777665322 455666666677777777655443 466666666667777666666655553
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=1.9e-05 Score=83.94 Aligned_cols=203 Identities=5% Similarity=-0.091 Sum_probs=105.7
Q ss_pred CCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCC-hhHHHHHHHHHHHc-Cc-cccHHHHHHHHHHHHc----cCCH
Q 004273 66 GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD-PLFVMETWRMMEEK-EI-GLNNKCYLLMMQALCK----GGYL 138 (764)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~----~g~~ 138 (764)
++.+.+..+|+.....- |+...+...+....+.++ .+....+|+..+.. |. +.+...|...+..+.. .|++
T Consensus 28 ~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 67777777777776642 566666666655544442 34456666666653 32 2345566666655432 3566
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAK---LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
+.+.++|++... +++. .+..+-..|.. ..+...+.+++.+ . .+.+..|..+
T Consensus 106 ~~vR~iy~rAL~---~P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~-------------------~--~~~y~~ar~~ 159 (493)
T 2uy1_A 106 EKIRNGYMRALQ---TPMG--SLSELWKDFENFELELNKITGKKIVGD-------------------T--LPIFQSSFQR 159 (493)
T ss_dssp HHHHHHHHHHHT---SCCT--THHHHHHHHHHHHHHHCHHHHHHHHHH-------------------H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHh---Chhh--hHHHHHHHHHHHHHHhccccHHHHHHH-------------------H--hHHHHHHHHH
Confidence 677777777653 1111 11222222211 1111122222111 1 1223344444
Q ss_pred HHHHHccCC-CCHHhHHHHHHHhhcc--C-----CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCccc
Q 004273 216 WEDYIKHYS-LSIFSLRKFVWSFTRL--R-----DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 216 ~~~~~~~~~-~~~~~~~~li~~~~~~--g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
++.+....+ .+...|...+..-... | ..+.+..+|+++.... |..
T Consensus 160 y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~------------------------- 212 (493)
T 2uy1_A 160 YQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYA------------------------- 212 (493)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTC-------------------------
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCC-------------------------
Confidence 444443211 1333455544432221 1 1345667888877632 222
Q ss_pred chhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004273 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 331 (764)
...|-..+.-+.+.|+.+.|..+|++.... |....+
T Consensus 213 -----~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l 248 (493)
T 2uy1_A 213 -----EEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFL 248 (493)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHH
Confidence 147888888888999999999999999986 555443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=5.6e-07 Score=81.45 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=92.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHh
Q 004273 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL-AVW 205 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 205 (764)
.+...+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|+...... |+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44445555666666666666554332 2233455555556666666666666665554432 222222111111 112
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004273 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.++...+...++...+..|.+...+..+..++...|++++|...|+++.+....+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----------------------- 143 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----------------------- 143 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-----------------------
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-----------------------
Confidence 223334566666666666667777777777888888888888888877763222211
Q ss_pred ccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
...+..+...+...|+.++|...|++..
T Consensus 144 -------~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 144 -------GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp -------THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 0367777777777888888877777654
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=1e-05 Score=79.25 Aligned_cols=232 Identities=8% Similarity=-0.058 Sum_probs=174.6
Q ss_pred HHHHHHHHHhcCCc-chHHHHHHHhhhccCCCCcchHHHHHHHhhCCC--ChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 55 TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSP--DPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 55 ~~~~i~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
....+.+..+.|.. ++|+.+++.++..+ |-....++.--.++...+ ++++++++++.++..+ +-+..+|+.--..
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~i 112 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHH
Confidence 33445555666655 69999999999887 333344677777777777 9999999999999875 4456677765555
Q ss_pred H----Hcc---CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH--HHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 132 L----CKG---GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV--HANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 132 ~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
+ ... +++++++.+++.+.+.+ +-|..+|+.-...+.+.|.++ ++++.++.+.+..+. |...|+.-...
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~l 189 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 5 444 78999999999998765 446667877777777788887 999999999987654 77777766555
Q ss_pred HHhccC------hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH-HHHHHHHHHHhh-hcccchhcccccccccc
Q 004273 203 AVWQKN------LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS-AYETLQHMVALA-MMGKLYINRTSEGRLRS 274 (764)
Q Consensus 203 ~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~-~~~~~~~~~~~~~~~~~ 274 (764)
....+. ++++.+.++.+....+.|..+|+.+..++.+.|.... +..+..++.+.+ ..|..
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s------------ 257 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS------------ 257 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC------------
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC------------
Confidence 666665 8889999999999999999999999999988887444 444555554422 01111
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
...+..+...+.+.|+.++|.++++.+.+
T Consensus 258 ------------------~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 ------------------SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 15788899999999999999999999886
No 108
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=6.6e-06 Score=81.46 Aligned_cols=213 Identities=8% Similarity=-0.043 Sum_probs=144.5
Q ss_pred HHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH---HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 74 LLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK---CYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
.+..+......|+..+...+...+.-.- + .++. .....+.. .+...+..+...|++++|..++++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444443334577777777776665321 1 1221 11122222 333446778899999999999999876
Q ss_pred hcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 151 RYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 151 ~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.....|+. ..+..+...+...|++++|+..|+........ ++ ..+++.+...|...|++++|...++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44333332 13445777778888999999999999874322 23 22688888899999999999999999985
Q ss_pred c---C----CCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004273 222 H---Y----SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 222 ~---~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
. . +....++..+..+|.+.|++++|...+++..+.....+.... ...
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~--------------------------~~~ 237 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL--------------------------IGQ 237 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT--------------------------HHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH--------------------------HHH
Confidence 2 2 112347889999999999999999999998874322221100 025
Q ss_pred hHHHHHHHHHccCC-HHHHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQN-SGLAEQLMLQMQS 321 (764)
Q Consensus 295 ~~~~li~~~~~~g~-~~~a~~~~~~m~~ 321 (764)
+|..+..++.+.|+ +++|.+.|++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999999995 6999999988754
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.59 E-value=1.1e-06 Score=81.97 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=33.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
+...|.+.|++++|+..|+...+..+. +...+..+...+...|++++|...|++..+..|.+..++..+..+|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444444455555555555544443211 33344444444444444444444444444444444444444444443
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=2.8e-06 Score=79.43 Aligned_cols=178 Identities=10% Similarity=-0.079 Sum_probs=138.1
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC----CHHHHHHH
Q 004273 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG----YLEEASNL 144 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 144 (764)
.+|++.|++..+.| ++..+..+...+...++++.|++.|++..+.| ++..+..|...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45777888877754 56677778888888899999999999988876 56677778888887 6 89999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh----ccChhHHHHH
Q 004273 145 IYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRMVG-KNEVTYTELLKLAVW----QKNLSAVHEI 215 (764)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~~~~~~a~~~ 215 (764)
|++..+. -+...+..|...|.. .+++++|+..|+...+.|.. .+..++..|-..|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9988653 256677788888877 78999999999998886532 126677777777877 7889999999
Q ss_pred HHHHHccCCCCHHhHHHHHHHhhcc-C-----CHHHHHHHHHHHHHhhh
Q 004273 216 WEDYIKHYSLSIFSLRKFVWSFTRL-R-----DLKSAYETLQHMVALAM 258 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 258 (764)
|+...+. +.+...+..|..+|... | +.++|...|++..+.|.
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9998775 45566778888887653 3 89999999999988653
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.59 E-value=3e-07 Score=80.53 Aligned_cols=130 Identities=6% Similarity=-0.171 Sum_probs=105.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
|...+...|++++|+..++...... +-+...+-.+...|.+.|++++|++.|+...+..+. +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 4556777899999999999875432 223446677889999999999999999999986433 6778899999999999
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHH-HHHHHHhhhcccc
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET-LQHMVALAMMGKL 262 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~ 262 (764)
++++|...|+...+..|.++.++..+..+|.+.|+.++|.+. +++..+ +.|+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCC
Confidence 999999999999998888999999999999999998776655 588887 66665
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.58 E-value=3e-06 Score=80.10 Aligned_cols=182 Identities=10% Similarity=-0.045 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCC-C-CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHS-L-GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLL 127 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 127 (764)
..+......+...|++++|+..|+.+...... + ....+..+..++.+.|+++.|+..|+++.+... .+. ..+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHH
Confidence 34555677799999999999999999886521 1 124677788899999999999999999998742 222 24555
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 128 MMQALCK------------------GGYLEEASNLIYFLGERYGIYPIL-PVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 128 li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
+..++.. .|++++|+..|+++.+.. |+. ..+...... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHH----------HHHHHHHH---
Confidence 5555553 578999999999998654 332 222221110 00111110
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCH---HhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004273 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI---FSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 256 (764)
.....+...+...|+++.|...|+.+.+..|.++ .++..+..+|.+.|+.++|.+.++.+...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0112445667889999999999999998766554 56888899999999999999999988873
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.58 E-value=7.5e-07 Score=87.89 Aligned_cols=167 Identities=7% Similarity=-0.142 Sum_probs=135.7
Q ss_pred CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004273 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (764)
+.+...+..+...+.+.|+++.|.+.|++..+.. +.+...+..+...|.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence 3445567777888889999999999999999885 456778899999999999999999999988654 345433322
Q ss_pred -HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCC--HHhHHHHHHHhhcc
Q 004273 164 -FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRL 240 (764)
Q Consensus 164 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 240 (764)
....+.+.++.++|+..|+......+ .+...+..+...+...|++++|.+.+..+.+..+.+ ...+..++.++...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22336677888889999999888643 266788888889999999999999999999876555 78999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004273 241 RDLKSAYETLQHMVA 255 (764)
Q Consensus 241 g~~~~A~~~~~~m~~ 255 (764)
|+.+.|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999888764
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=3.1e-06 Score=84.42 Aligned_cols=203 Identities=8% Similarity=-0.086 Sum_probs=141.1
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004273 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|++++|.+++++..+..- .. .+...|++++|...|++. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 4667788888888776521 11 122258899988888765 345677899999999
Q ss_pred HHHHHHhcCCCC-----ChhhHHHHHHHHHhccChhHHHHHHHHHHcc----CCC--CHHhHHHHHHHhhccCCHHHHHH
Q 004273 180 CLDLMDSRMVGK-----NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH----YSL--SIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 180 ~~~~m~~~g~~p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
.|....+..... -..+|..+...|...|++++|...+++..+. ..+ -..+++.+..+|.. |+++.|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 998876531111 1347778888899999999999999988763 112 24578888999988 99999999
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CC
Q 004273 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----GL 324 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~ 324 (764)
.|++..+........ .....+++.+...|.+.|++++|+..|++.... +.
T Consensus 137 ~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 137 LYQQAAAVFENEERL--------------------------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCh--------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 999988732221110 000147888999999999999999999988753 11
Q ss_pred CCC-cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004273 325 QPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 325 ~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~ 355 (764)
.+. ..++..+..++...|++++|...|++..
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 1144445555666688888888887776
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.51 E-value=1.1e-06 Score=96.57 Aligned_cols=165 Identities=7% Similarity=-0.124 Sum_probs=117.4
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004273 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.|++++|+..|++..+.. +-+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477889999999887765 3456678888888888899999999999998875 45677888899999999999999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---cChhHHHHHHHHHHc
Q 004273 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ---KNLSAVHEIWEDYIK 221 (764)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~ 221 (764)
|++..+.. +.+...+..+...|.+.|++++|.+.|+...+... .+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99887653 33566888899999999999999999999887643 2566778888888888 999999999999887
Q ss_pred cCCCCHHhHHHHH
Q 004273 222 HYSLSIFSLRKFV 234 (764)
Q Consensus 222 ~~~~~~~~~~~li 234 (764)
..+.+...+..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 6665555554443
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.49 E-value=9.3e-06 Score=75.82 Aligned_cols=175 Identities=9% Similarity=-0.037 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC----CHHHHHHH
Q 004273 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH----SMVHANLC 180 (764)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 180 (764)
+|.+.|++..+.| ++..+..|...|...+++++|+.+|++..+. + +...+..|...|.. + ++++|+..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4678888888875 6778888899999999999999999998753 2 56678888888887 6 99999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHh----ccChhHHHHHHHHHHccCCC--CHHhHHHHHHHhhc----cCCHHHHHHHH
Q 004273 181 LDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTR----LRDLKSAYETL 250 (764)
Q Consensus 181 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~----~g~~~~A~~~~ 250 (764)
|+...+.| +..++..|-..|.. .+++++|.+.|+...+..+. ++.++..|..+|.. .++.++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 66777777777776 88999999999999876442 37888899999988 78999999999
Q ss_pred HHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCC
Q 004273 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT-Q-----NSGLAEQLMLQMQSLG 323 (764)
Q Consensus 251 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 323 (764)
++..+. .++. .++..|...|... | ++++|...|++..+.|
T Consensus 153 ~~A~~~--~~~~-------------------------------~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTG-------------------------------YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTT-------------------------------HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCH-------------------------------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999874 1222 3566676666543 2 8899999998888766
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.49 E-value=2.3e-06 Score=93.80 Aligned_cols=154 Identities=10% Similarity=-0.091 Sum_probs=119.7
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004273 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 368889999999988764 4467889999999999999999999999987643 3356788999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc---CCHHHHHHHHHHHHHh
Q 004273 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---RDLKSAYETLQHMVAL 256 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 256 (764)
.|++..+.... +...+..+...+...|++++|.+.++...+..+.+...+..+..++... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999886432 5678888999999999999999999999998888899999999999999 9999999999999884
Q ss_pred h
Q 004273 257 A 257 (764)
Q Consensus 257 ~ 257 (764)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=3e-05 Score=76.68 Aligned_cols=173 Identities=8% Similarity=-0.022 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC---CC--
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG---KN-- 192 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~-- 192 (764)
...+...+..+...|++++|.+.++...+.....++. ..+..+...+...|++++|+..|+........ +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3455667788899999999999998776543221111 22444666678889999999999988753211 11
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHc---cCCCC----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhc
Q 004273 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 265 (764)
..+|+.+...|...|++++|...+++..+ ..+.+ ..+++.+..+|.+.|++++|...+++..+.....+...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~- 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA- 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH-
Confidence 34778888899999999999999999884 23222 26889999999999999999999999887432211100
Q ss_pred ccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 004273 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA-EQLMLQMQ 320 (764)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 320 (764)
....+|..+...|.+.|++++| ...|++..
T Consensus 234 -------------------------~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 -------------------------LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -------------------------SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0025888899999999999999 77777654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.35 E-value=1.5e-05 Score=74.44 Aligned_cols=141 Identities=7% Similarity=-0.043 Sum_probs=87.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+...|++++|+..|+... .|+...+..+...+...|++++|.+.++...+..+.+...+..+..+|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 34444555566666666555442 34555555666666666666666666666665556666777777788888888
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
+++|...|++..+. .|+...... ... ........ ...|..+...+...|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~-----~~~-------~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDY-----KIL-------GLQFKLFA--CEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEEC-----GGG-------TBCCEEEH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CCCccHHHH-----HHh-------ccccCccc--hHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888773 222100000 000 00000000 147888999999999999999999999876
Q ss_pred C
Q 004273 323 G 323 (764)
Q Consensus 323 g 323 (764)
.
T Consensus 151 ~ 151 (213)
T 1hh8_A 151 K 151 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.35 E-value=1.5e-05 Score=74.35 Aligned_cols=129 Identities=11% Similarity=-0.119 Sum_probs=106.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004273 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 56 ~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 135 (764)
......+...|++++|+..|++.. .++...+..+..++...|+++.|++.+++..+.. +.+...+..+...|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344666888999999999999885 3577788999999999999999999999999875 55778899999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCC--------------ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 004273 136 GYLEEASNLIYFLGERYGIYP--------------ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV 189 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (764)
|++++|+..|++..+..+-.+ +...+..+..+|.+.|++++|...|+...+...
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999876432111 125788888999999999999999999988643
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.33 E-value=5e-06 Score=72.38 Aligned_cols=111 Identities=8% Similarity=-0.064 Sum_probs=81.6
Q ss_pred hhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC
Q 004273 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 117 (764)
.++...++..|+. ...+..+...+.+.|++++|+..|++....+ |-++..|..+..++...|++++|++.|++..+.+
T Consensus 23 ~~l~~al~l~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDM-MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 4455556677774 3344455667778888888888888887765 4556667777778888888888888888888775
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004273 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
+.++..|..+..+|...|++++|+..|++..+.
T Consensus 101 -P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 -KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446677778888888888888888888877654
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.33 E-value=4.4e-05 Score=75.43 Aligned_cols=164 Identities=7% Similarity=-0.060 Sum_probs=117.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 004273 514 TVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAA----TYNIMIDCCSIIRCFKSASALVSMMVRDGFY-PQ----TMTYT 583 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-p~----~~~~~ 583 (764)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999887643 122321 3334666677778999999999988874222 22 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HhhH
Q 004273 584 ALIKILLDYGDFDEALNLLDLVSL----E-GIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPD-PSTC 652 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~ 652 (764)
.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999998873 1 22222 237888899999999999999999887752 22233 4566
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHHH
Q 004273 653 HFVFSGYVNCG-FHNSAMEALQVLSM 677 (764)
Q Consensus 653 ~~ll~~~~~~g-~~~~a~~~~~~~~~ 677 (764)
..+-.+|.+.| ++++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66777889999 46999988887543
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.29 E-value=7.6e-06 Score=72.79 Aligned_cols=130 Identities=9% Similarity=-0.153 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|.+.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444555666667777777777777776654 3345566666667777777777777777777654 3455666677777
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhh--HHHHHHHhccCCHHHHHHHHHHHH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVY--NSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
+...|++++|...|++..+..+- +...+ -.+...+.+.|++++|+..+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776554321 22233 223333555666777766665543
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.27 E-value=5.1e-05 Score=74.96 Aligned_cols=162 Identities=7% Similarity=-0.041 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCc------chHHHHHHHhhCCCChhHHHHHHHHHHHcCc---ccc--HHHH
Q 004273 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGA------DDFFHILNYCARSPDPLFVMETWRMMEEKEI---GLN--NKCY 125 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~ 125 (764)
..+..+...|++++|++.+.+..+... ... ..+..+...+...|+++.|++.+++..+... .+. ..+|
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 344555556666666666655544321 111 1122333444455566666666655553211 111 2355
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcC----CCC-Chhh
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPI-----LPVYNSFLGACAKLHSMVHANLCLDLMDSRM----VGK-NEVT 195 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t 195 (764)
+.+...|...|++++|...|++..+.....|+ ..+|+.+...|.+.|++++|+..++...+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 55555666666666666666555421000111 1355555555666666666666655544321 000 0334
Q ss_pred HHHHHHHHHhccChhHH-HHHHHHH
Q 004273 196 YTELLKLAVWQKNLSAV-HEIWEDY 219 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a-~~~~~~~ 219 (764)
|..+...+...|++++| ...++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44455555555555555 4444443
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.27 E-value=1.2e-05 Score=67.32 Aligned_cols=94 Identities=15% Similarity=0.022 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004273 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
.+..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33334444445555555555555544432 2233334444444444444555544444444432 223334444444444
Q ss_pred ccCCHHHHHHHHHHHh
Q 004273 134 KGGYLEEASNLIYFLG 149 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~ 149 (764)
..|++++|...|+++.
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 4444444444444443
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.26 E-value=1.7e-05 Score=66.66 Aligned_cols=108 Identities=13% Similarity=-0.112 Sum_probs=61.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+......|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|+...+..+. +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 45555666666666666666666655433 234445666666666666666666666666554322 344555555566
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
...|++++|.+.|+...+-.|.+..++..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 6666666666666666555555555544443
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.26 E-value=7.5e-06 Score=71.21 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=55.0
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
.+..+...+.+.|++++|+..|+......+. +...|..+-.++...|++++|...|++..+-.|.++..|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4444555555555555555555555554221 344555555555555555555555555555555556666666666667
Q ss_pred cCCHHHHHHHHHHHHH
Q 004273 240 LRDLKSAYETLQHMVA 255 (764)
Q Consensus 240 ~g~~~~A~~~~~~m~~ 255 (764)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776666
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.26 E-value=1.1e-05 Score=70.29 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=83.2
Q ss_pred hhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc
Q 004273 39 TLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118 (764)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 118 (764)
.|...++..|+. ...+..+...+...|++++|+..|+.....+ +.+...+..+..++...|+++.|++.|++..+.+
T Consensus 9 ~~~~al~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSDT-LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344556666664 3444455677888888888988888887765 4566667777788888888888888888888775
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004273 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
+.++..+..+..+|...|++++|+..|+...+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4466777788888888888888888888876544
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.25 E-value=2.9e-05 Score=68.96 Aligned_cols=129 Identities=12% Similarity=-0.135 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|+..|+...+... .+..++..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 44455555666666666666666654432 22344555666666666666666666666655421 2444555555666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHH--HHHHhhccCCHHHHHHHHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRK--FVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...|++++|...++...+..+.+...+.. ++..+.+.|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 66666666666666666555555544433 33336677888888888877654
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.25 E-value=1.5e-05 Score=67.03 Aligned_cols=103 Identities=9% Similarity=-0.071 Sum_probs=72.9
Q ss_pred CchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHH
Q 004273 46 LNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY 125 (764)
Q Consensus 46 ~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (764)
++|+. ...+......|.+.|++++|++.|++..+.+ +.++..|..+..++.+.|+++.|++.+++.++.+ +.+...|
T Consensus 8 inP~~-a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~ 84 (126)
T 4gco_A 8 INPEL-AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGY 84 (126)
T ss_dssp CCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 45553 3344455666777888888888888877665 4456667777777777788888888888777764 4456677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhh
Q 004273 126 LLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
..+..+|...|++++|++.|++..+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777788888888887777654
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.24 E-value=2.4e-05 Score=65.29 Aligned_cols=109 Identities=12% Similarity=-0.069 Sum_probs=48.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...|+.+.+... .+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 34444444444555555555554443321 12233444444444445555555555544444321 1333444444444
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 235 (764)
...|++++|...++.+.+..+.+...+..+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45555555555555444443334444433333
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.24 E-value=0.00021 Score=70.72 Aligned_cols=151 Identities=9% Similarity=-0.027 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH--------HHHHHHHHHHHhhhcccchhcccccccccccccCC
Q 004273 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK--------SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
+++++.++++.+.+..+.+..+|+.-..++.+.|.++ ++++.++++.+......
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~------------------ 201 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN------------------ 201 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH------------------
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH------------------
Confidence 4445555555555555555555555555544444444 88899999988433332
Q ss_pred CccCCcccchhhhHhhHHHHHHHHHccCC-------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh--------
Q 004273 280 PIPLNALPVMKVLRWSFSDVIHACGRTQN-------SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL-------- 344 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~-------- 344 (764)
.+|+.....+.+.++ ++++++.+++..... +-|...|+.+-..+.+.|+.
T Consensus 202 --------------SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 202 --------------SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp --------------HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred --------------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 488887777777776 688999998888764 22555666655555555543
Q ss_pred ------------hHHHHHHHHHHHCC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004273 345 ------------RNGMEVLKIMQQNN-----LKPQDSTIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 345 ------------~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 391 (764)
....++..++...+ -.+......-|++.|...|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12222222222111 012344445566666666666666666666653
No 133
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00046 Score=68.02 Aligned_cols=196 Identities=9% Similarity=-0.100 Sum_probs=145.6
Q ss_pred HHHHHhcCCcc-hHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCC----------hhHHHHHHHHHHHcCccccHHHHH
Q 004273 59 IVDALCRGERS-RASHLLLNLGHAHHSLGADD-FFHILNYCARSPD----------PLFVMETWRMMEEKEIGLNNKCYL 126 (764)
Q Consensus 59 i~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~ 126 (764)
+....+.|.+. +|+.+++.+...+ |+..+ ++.--......+. ++.++.+++.+...+ +-+..+|+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~ 112 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 112 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44455677765 8999999999876 44433 4433222222222 567889999998875 55778888
Q ss_pred HHHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 127 LMMQALCKGG--YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 127 ~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.-.-.+.+.| .+++++.+++.+.+.+ +-|...|+.-..++...|. ++++++.++.+.+..+. |..+|+.....+
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 8777777777 4899999999998765 3466677777777777787 69999999999987654 777777665555
Q ss_pred Hhc--------------cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhh
Q 004273 204 VWQ--------------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-----------RDLKSAYETLQHMVALAM 258 (764)
Q Consensus 204 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~ 258 (764)
... +.++++.+.+.......|.|..+|+-+-..+.+. +.++++++.++++.+ .
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~ 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--L 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--h
Confidence 444 4477888999999888999999998777776665 467889999999988 6
Q ss_pred cccc
Q 004273 259 MGKL 262 (764)
Q Consensus 259 ~~~~ 262 (764)
.|+.
T Consensus 268 ~pd~ 271 (331)
T 3dss_A 268 EPEN 271 (331)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 6765
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.22 E-value=1.3e-05 Score=72.44 Aligned_cols=123 Identities=8% Similarity=-0.033 Sum_probs=95.1
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH-HHccCCH--
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA-LCKGGYL-- 138 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 138 (764)
+...|++++|+..++...... +.+...+..+..++...|+++.|...|++..+.+ +.+...+..+... |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 456788999999999888765 4566778888888889999999999999988875 4466777788888 7788988
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
++|...|++..+.. +.+...+..+...|...|++++|...|+...+..
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999887653 2345678888888999999999999999988753
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.00023 Score=70.46 Aligned_cols=221 Identities=9% Similarity=-0.014 Sum_probs=133.2
Q ss_pred CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc-C-CHHHH
Q 004273 101 PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-H-SMVHA 177 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A 177 (764)
+..++|+++++.++..+ +-+..+|+.--..+...| .+++++++++.+...+ +-+..+|+.-...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 33445666666666554 334445555555555555 3666666666665432 23344555544444444 4 56666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhccChh--------HHHHHHHHHHccCCCCHHhHHHHHHHhhccCC-------
Q 004273 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS--------AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD------- 242 (764)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 242 (764)
+++++.+.+...+ +..+|+.-.-.+...+.++ ++.+.++.+.+..+.|..+|+....++.+.+.
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 6666666654322 4445544333333333343 77788888888788888888888888877775
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCH-------------
Q 004273 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS------------- 309 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~------------- 309 (764)
++++++.++++.+ ..|+. ...|+-+-..+.+.|+.
T Consensus 224 ~~eELe~~~~aI~--~~P~n------------------------------~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 224 LQDELIYILKSIH--LIPHN------------------------------VSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHhcCCCccccccccccccc
Confidence 6888888888887 55554 14777666666665543
Q ss_pred -------HHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004273 310 -------GLAEQLMLQMQSLG-----LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 310 -------~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 357 (764)
....+...++...+ -.++.+.+..+...|...|+.++|.++++.+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23333333333221 1356677888889999999999999999998643
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=1.4e-05 Score=68.98 Aligned_cols=111 Identities=13% Similarity=0.041 Sum_probs=85.1
Q ss_pred hhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc
Q 004273 39 TLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118 (764)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 118 (764)
.|...+...|+.. ..+......+...|++++|+..|+.....+ +.+...+..+..++...|+++.|+..|+...+.+
T Consensus 6 ~l~~al~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTL-EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp ---CCTTCCHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHcCCHHHH-HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 3445566777643 344455677888999999999999988776 4566677788888888999999999999988875
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004273 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
+.++..+..+..+|...|++++|...|+...+..
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566778888888999999999999998886543
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=1.9e-05 Score=77.44 Aligned_cols=96 Identities=10% Similarity=-0.091 Sum_probs=60.7
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..+..+...+.+.|++++|+..|+......+. +...|..+..++...|++++|...++...+..+.+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555566666666666655554211 44455555555666666666666666666655666667777777788
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004273 239 RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 239 ~~g~~~~A~~~~~~m~~ 255 (764)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888887776
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.19 E-value=8.3e-06 Score=80.02 Aligned_cols=193 Identities=8% Similarity=-0.070 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004273 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+..|++..... +.+...|..+..++.+.|+++.|...+++..+.+ +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345556777889999999999999998875 3466778888999999999999999999998874 45677889999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004273 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
...|++++|...|++..+..+- +...+...+....+. ..+... ..........+......+ ..+ ..|+.++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE--QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH--TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 9999999999999988654321 111222233322221 111221 122223233344443333 333 36888999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhcc-CCHHHHHHHHHHHHH
Q 004273 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVA 255 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 255 (764)
.+.++...+..+.+......+...+.+. +..++|.++|..+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9988888877666666666666666665 678889999988765
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.19 E-value=2.7e-05 Score=71.93 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHcc---CCCC----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccc
Q 004273 196 YTELLKLAVWQKNLSAVHEIWEDYIKH---YSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 268 (764)
+..+-..+...|++++|.+.+....+. .+.+ ...+..+..++...|++++|...+++..+.........
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 144 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV---- 144 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH----
Confidence 334444445555555555555544432 1111 23456666677777888888877777765322211100
Q ss_pred cccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
....++..+...+...|++++|.+.+++..+
T Consensus 145 ----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 ----------------------AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 0013567777788888888888888777653
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.18 E-value=3.1e-05 Score=65.65 Aligned_cols=94 Identities=12% Similarity=-0.081 Sum_probs=45.3
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+...+.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 4444445555555555555555554442 2234444555555555555555555555544322 123334444444555
Q ss_pred ccCCHHHHHHHHHHHHh
Q 004273 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
+.|++++|...|+...+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555444
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.17 E-value=3.5e-05 Score=65.30 Aligned_cols=120 Identities=8% Similarity=-0.066 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHH
Q 004273 49 ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128 (764)
Q Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (764)
......+..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|.+.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3456667777888999999999999999998765 4466778888899999999999999999999874 4567788999
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004273 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
...|.+.|++++|.+.|++..+.. +.+...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 999999999999999999987643 223446666666665554
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=2.7e-05 Score=65.70 Aligned_cols=118 Identities=9% Similarity=-0.131 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+..+ .+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 3344445555555555555555555554322 12334455555555555555555555555554321 13344444555
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...|++++|...++...+..+.+...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555555555444455555555555544443
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.15 E-value=2.3e-05 Score=72.44 Aligned_cols=125 Identities=10% Similarity=-0.001 Sum_probs=67.7
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004273 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.|++++|.+.++.+.........++..+...+...|+++.|...+++..+.....+..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------- 62 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---------------------- 62 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH----------------------
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc----------------------
Confidence 3444444443332222222334455566666667777777777777666522211110
Q ss_pred ccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004273 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----GLQP--SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
.....++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+
T Consensus 63 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 63 ----TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 000146777777888888888888887776542 1011 122355555666677777777777766653
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.12 E-value=1.8e-05 Score=71.45 Aligned_cols=119 Identities=9% Similarity=-0.004 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH-hhccCCH--HHHH
Q 004273 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDL--KSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~ 247 (764)
.|++++|+..|+......+ .+...+..+...+...|++++|...++...+..+.+...+..+..+ +...|++ +.|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4445555555544444321 1334444444445555555555555555554444445555555555 5555665 6666
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
..|+++.+ ..|+. ...|..+...+...|++++|...|++..+.
T Consensus 102 ~~~~~al~--~~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALA--LDSNE------------------------------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666655 23332 135555566666666666666666666554
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.11 E-value=3.7e-05 Score=73.51 Aligned_cols=189 Identities=7% Similarity=-0.142 Sum_probs=132.5
Q ss_pred HHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH-------HHHhhCCCChhHHHHHHHHHHHcCcccc-----------
Q 004273 60 VDALCRGERSRASHLLLNLGHAHHSLGADDFFHI-------LNYCARSPDPLFVMETWRMMEEKEIGLN----------- 121 (764)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------- 121 (764)
..+ ..+++..|.+.|.++.... +-....+..+ ..++.+.+...+++..+..-.+ +.|+
T Consensus 15 ~~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 15 VSM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGL 90 (282)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTT
T ss_pred hcc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCc
Confidence 344 6899999999999999876 2334445544 2222222233333333333332 2221
Q ss_pred -----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 004273 122 -----------NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG 190 (764)
Q Consensus 122 -----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 190 (764)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 223445677888999999999999988643 3544466666678899999999999998554421 1
Q ss_pred CC--hhhHHHHHHHHHhccChhHHHHHHHHHHccCC-C--CHHhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004273 191 KN--EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS-L--SIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 191 p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 256 (764)
|. ...+..+-.++...|++++|...|++...+.. | ..........++.+.|+.++|..+|+++...
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 23667778889999999999999999987642 4 3457778888999999999999999999983
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.11 E-value=2e-05 Score=68.47 Aligned_cols=95 Identities=6% Similarity=-0.160 Sum_probs=41.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+......+. +...+..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 33344444444444444444444443322 123334444444444444444444444444443211 233344444444
Q ss_pred HhccChhHHHHHHHHHHc
Q 004273 204 VWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~ 221 (764)
...|++++|.+.|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.07 E-value=3.9e-05 Score=64.67 Aligned_cols=99 Identities=10% Similarity=-0.085 Sum_probs=87.9
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH
Q 004273 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
+...+..+...+...|++++|...|+....... .+...+..+...+...|++++|.+.++...+..+.+...+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445778888899999999999999999987642 3677888888899999999999999999998888889999999999
Q ss_pred hhccCCHHHHHHHHHHHHHh
Q 004273 237 FTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~m~~~ 256 (764)
+...|+++.|...|++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999883
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=6.4e-05 Score=75.78 Aligned_cols=152 Identities=11% Similarity=-0.009 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-------------hhhhHHHHHHH
Q 004273 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-------------LPVYNSFLGAC 168 (764)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~li~~~ 168 (764)
+++.|.+.|+...+.. +.+...+..+...|.+.|++++|+..|++..+..+-.++ ..+|..+..+|
T Consensus 128 ~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444332 224567788888888999999999999888754321110 36888899999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH-H
Q 004273 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA-Y 247 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~ 247 (764)
.+.|++++|+..|+...+..+ .+...|..+..++...|++++|...|+...+..+.+..++..+..++.+.|+.++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988643 26778888888999999999999999999988888889999999999999999888 4
Q ss_pred HHHHHHHH
Q 004273 248 ETLQHMVA 255 (764)
Q Consensus 248 ~~~~~m~~ 255 (764)
.+|..|..
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666654
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.03 E-value=6.3e-05 Score=75.85 Aligned_cols=152 Identities=13% Similarity=-0.017 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHH
Q 004273 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--------------EVTYTELLK 201 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~ 201 (764)
+++++|+..|+...+.. +-+...|..+...|.+.|++++|+..|+...+...... ..+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44555555554332211 11345788899999999999999999999988643321 478888999
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCc
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
++...|++++|...++...+..+.+..++..+..+|...|++++|...|++..+ +.|+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~------------------- 263 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNN------------------- 263 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSC-------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC-------------------
Confidence 999999999999999999998888999999999999999999999999999998 55654
Q ss_pred cCCcccchhhhHhhHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 004273 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLA-EQLMLQMQS 321 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 321 (764)
...+..+...+.+.|+.++| ..+|..|..
T Consensus 264 -----------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 264 -----------KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15788888999999999888 456666653
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.02 E-value=1.3e-05 Score=73.86 Aligned_cols=132 Identities=9% Similarity=-0.118 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC--------------hhhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI--------------LPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
..+..+...+...|++++|+..|++..+..+-.|+ ...|..+..+|.+.|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555666666666666666665542211111 1466666777777777777777777776653
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH-HHHHHHHH
Q 004273 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY-ETLQHMVA 255 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 255 (764)
. .+...+..+..++...|++++|...|+...+..+.+..++..+..++...++.+++. ..|..+..
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 245566666677777777777777777777766667777777777777666666655 44444443
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.00 E-value=6.2e-05 Score=71.93 Aligned_cols=189 Identities=10% Similarity=-0.122 Sum_probs=121.3
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHH-------HHHHHccCCHHHHHHHHHHHhhhcCCCCChh------------
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLM-------MQALCKGGYLEEASNLIYFLGERYGIYPILP------------ 159 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------ 159 (764)
..+++..|.+.|.+..+.+ +-....|..+ ..++.+.++..+++..+..-. ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCcccc
Confidence 5788999999999998875 4456677766 455555555555555444332 3333221
Q ss_pred ----------hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCC--H
Q 004273 160 ----------VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--I 227 (764)
Q Consensus 160 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 227 (764)
.+-.+...+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..++...+...|. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 12235566777889999999988877654 444344444446778888888888887554322221 2
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccC
Q 004273 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 307 (764)
..+..+..++...|++++|++.|++.......|... ...+.....++.+.|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~-----------------------------~da~~~~glaL~~lG 222 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA-----------------------------RAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH-----------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc-----------------------------HHHHHHHHHHHHHcC
Confidence 367777778888888888888888776422113210 025556667777788
Q ss_pred CHHHHHHHHHHHHHC
Q 004273 308 NSGLAEQLMLQMQSL 322 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~ 322 (764)
+.++|..+|+++...
T Consensus 223 r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 223 NESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 888888888888765
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.00 E-value=5.9e-05 Score=66.92 Aligned_cols=101 Identities=14% Similarity=-0.083 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004273 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
....+..+...+...|++++|+..|++..+.. +-+...|..+..++...|+++.|+..+++.++.+ +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666777888999999999999888776 3466678888888888899999999999888875 446778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhhcC
Q 004273 131 ALCKGGYLEEASNLIYFLGERYG 153 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~ 153 (764)
+|...|++++|+..|++..+..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCC
Confidence 88899999999999888876543
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.99 E-value=3e-05 Score=71.39 Aligned_cols=168 Identities=8% Similarity=-0.146 Sum_probs=69.3
Q ss_pred HHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHH
Q 004273 12 LIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFF 91 (764)
Q Consensus 12 ~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 91 (764)
.........|+++++. ..+... ....+ .....+......+...|++++|+..|++...... .++ .+.
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~-~~~ 75 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKK-SIYDYT---------DEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTE-EWD 75 (198)
T ss_dssp -------------CCC-SGGGCC---------HHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCT-TCC
T ss_pred chhhhhhhhhhccccC-chhhCC---------HHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-ccc-ccc
Confidence 3444555667777777 333311 11111 1234455556677788888888888888776431 111 000
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004273 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
.. ....-. .......|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...
T Consensus 76 ~~---------------~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~ 135 (198)
T 2fbn_A 76 DQ---------------ILLDKK---KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYF 135 (198)
T ss_dssp CH---------------HHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred hh---------------hHHHHH---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHc
Confidence 00 000000 00012344444555555555555555555554332 22334455555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHH
Q 004273 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
|++++|+..|+...+..+. +...+..+..++...++.+++.
T Consensus 136 ~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 136 GFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555443211 2333444444444444444333
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=0.00011 Score=59.79 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=65.0
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004273 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...|++..+..+-..+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455666666667777777777777776653 33555666667777777777777777776654321100355666677
Q ss_pred HHHhcc-CCHHHHHHHHHHHHhcC
Q 004273 166 GACAKL-HSMVHANLCLDLMDSRM 188 (764)
Q Consensus 166 ~~~~~~-g~~~~A~~~~~~m~~~g 188 (764)
..+.+. |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777766653
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=0.00022 Score=58.61 Aligned_cols=103 Identities=11% Similarity=-0.117 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+..+ .+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 33444444444555555555554443321 12333444444444445555555555544444321 1233444444444
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHh
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFS 229 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (764)
...|++++|.+.++...+..+.+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 44555555555554444433333333
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00013 Score=61.22 Aligned_cols=94 Identities=15% Similarity=-0.066 Sum_probs=45.1
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+.+.|+++.|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3444444445555555555555555443 2334445555555555555555555555544322 122334444455555
Q ss_pred ccCCHHHHHHHHHHHHh
Q 004273 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
..|++++|...|+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554444
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.93 E-value=0.0051 Score=60.55 Aligned_cols=220 Identities=7% Similarity=-0.119 Sum_probs=153.0
Q ss_pred CCCh-hHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC----------HHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004273 100 SPDP-LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY----------LEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 100 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (764)
.|.+ ++|+++++.++..+ +-+..+|+.--..+...|. +++++.+++.+...+ +-+..+|+.-...+
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL 118 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 118 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3444 47999999999875 3445566654444433333 688999999987654 34566777776677
Q ss_pred hccC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC-hhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-----
Q 004273 169 AKLH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL----- 240 (764)
Q Consensus 169 ~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 240 (764)
.+.| ++++++.+++.+.+..+. |..+|+.---.+...|. ++++.+.++.+.+..+.|..+|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 7777 589999999999987544 77777776666677777 58999999999998999999998887777665
Q ss_pred ---------CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc-----
Q 004273 241 ---------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----- 306 (764)
Q Consensus 241 ---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 306 (764)
+.++++++.+..... ..|++ ..+|+-+-..+.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~--~~P~d------------------------------~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF--TDPND------------------------------QSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHHSSSCGGG
T ss_pred cccccccchHHHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHhccCccc
Confidence 457889999999887 56655 24676555445444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-----HHhcCChhHHHHHHHHHHHCC
Q 004273 307 ------QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA-----IVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 307 ------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-----~~~~~~~~~a~~~~~~m~~~~ 358 (764)
+.++++++.++++.+. .||. .|..+-.+ ....+..+++...+.++.+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3567888888888875 5665 34322211 113455566666777776643
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.92 E-value=0.0001 Score=63.44 Aligned_cols=94 Identities=6% Similarity=-0.119 Sum_probs=48.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+.+.|+++.|...|+...+.+ +.+...|..+..+|...|++++|+..|++..+.+ +.+...+..+..+|.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHH
Confidence 3344444555555555555555555543 3344455555555555555555555555554432 123334455555555
Q ss_pred ccCCHHHHHHHHHHHHh
Q 004273 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
..|++++|+..|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.91 E-value=0.00014 Score=59.16 Aligned_cols=95 Identities=4% Similarity=-0.241 Sum_probs=50.6
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCC--CHHhHHHHHHHh
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSF 237 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~ 237 (764)
.+..+...+.+.|++++|...|+...+... .+...+..+...+...|++++|.+.++...+..+. +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 444444455555555555555555444321 13344444444555555555555555555554444 555556666666
Q ss_pred hcc-CCHHHHHHHHHHHHH
Q 004273 238 TRL-RDLKSAYETLQHMVA 255 (764)
Q Consensus 238 ~~~-g~~~~A~~~~~~m~~ 255 (764)
... |++++|.+.|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 666 666666666666654
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00046 Score=72.45 Aligned_cols=198 Identities=8% Similarity=-0.153 Sum_probs=144.4
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCc----------------chHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cc
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA----------------DDFFHILNYCARSPDPLFVMETWRMMEEKEI-GL 120 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~ 120 (764)
....+...|++++|++.|..+.+....... ..+..+...|...|+++.|.+.+..+.+.-- .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 356788999999999999998875422111 1267788999999999999999998876321 11
Q ss_pred cH----HHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhc--CC-
Q 004273 121 NN----KCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MV- 189 (764)
Q Consensus 121 ~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~- 189 (764)
+. .+.+.+-..+...|+++.|..+++...+. .+..+ ...++..|...|...|++++|..+++..... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 23444445556779999999998876432 11112 2346788999999999999999999987653 11
Q ss_pred -CC-ChhhHHHHHHHHHhccChhHHHHHHHHHHcc---CC-C-C--HHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 190 -GK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH---YS-L-S--IFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 190 -~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~-~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.| ...++..+...|...|++++|..+++..... .. | . ...+..+...+...++++.|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2346778888999999999999999988752 22 2 2 34677778888999999999999988876
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00024 Score=59.66 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
++..+-..+.+.|++++|.+.|++..+-.|.+...|+.+..+|.+.|++++|++.|++..+. .|+...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~---------- 77 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRA---------- 77 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--Ccccch----------
Confidence 45556667777778888888887777777777888888899999999999999999998873 332200
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 330 (764)
.......+|..+..++...|++++|++.|++.... .||..+
T Consensus 78 -------------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 78 -------------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred -------------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 00011136777888888899999999999887764 455443
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.0004 Score=72.97 Aligned_cols=200 Identities=9% Similarity=-0.075 Sum_probs=109.4
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCCh---------------hhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCh
Q 004273 130 QALCKGGYLEEASNLIYFLGERYGIYPIL---------------PVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNE 193 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 193 (764)
..+.+.|++++|++.|..+.+...-..+. ..+..|...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34555666666666666665432221111 124556667777777777777776654421 11111
Q ss_pred hh----HHHHHHHHHhccChhHHHHHHHHHHcc------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccch
Q 004273 194 VT----YTELLKLAVWQKNLSAVHEIWEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263 (764)
Q Consensus 194 ~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 263 (764)
.+ .+.+-..+...|+++.+..++.....- ...-..++..+...|...|++++|..+++.+...-...++.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11 111222223456677777776666531 11224466777888888888888888888776532222210
Q ss_pred hcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CC-C-C--cccHHHHHHH
Q 004273 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQ-P-S--SHTYDGFIRA 337 (764)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~-p-~--~~t~~~li~~ 337 (764)
......|..++..|...|++++|..++++..... +. | . ...+..+...
T Consensus 172 --------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 172 --------------------------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp --------------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred --------------------------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 0112577788888888888888888887765321 11 1 1 1223334444
Q ss_pred HHhcCChhHHHHHHHHHH
Q 004273 338 IVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~m~ 355 (764)
+...+++.+|...|.+..
T Consensus 226 ~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TTSSSCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 455666666666655543
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.86 E-value=5.3e-05 Score=63.09 Aligned_cols=95 Identities=4% Similarity=-0.140 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004273 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
.+......+.+.|++++|+..|++..+.. +-+...+..+..++...|+++.|+..|++..+.+ +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445556677777777777777777655 3455556666667777777777777777777664 335556667777777
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004273 134 KGGYLEEASNLIYFLGE 150 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~ 150 (764)
..|++++|+..|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00024 Score=59.57 Aligned_cols=93 Identities=11% Similarity=-0.055 Sum_probs=46.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC
Q 004273 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
..+...+.+.|++++|+..|+...+..+ .+...|..+..++...|++++|...++...+..+.+...+..+..++...|
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3333344444444444444444443321 133344444444444555555555555554444445555555666666666
Q ss_pred CHHHHHHHHHHHHH
Q 004273 242 DLKSAYETLQHMVA 255 (764)
Q Consensus 242 ~~~~A~~~~~~m~~ 255 (764)
++++|...|++..+
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666665
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.83 E-value=0.00034 Score=57.34 Aligned_cols=97 Identities=9% Similarity=-0.075 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHh
Q 004273 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 237 (764)
...+..+...+...|++++|...|+......+ .+...+..+...+...|++++|...++...+..+.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45677888889999999999999999988642 26777888888899999999999999999988888899999999999
Q ss_pred hccCCHHHHHHHHHHHHH
Q 004273 238 TRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 238 ~~~g~~~~A~~~~~~m~~ 255 (764)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999999987
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.82 E-value=0.00016 Score=63.50 Aligned_cols=143 Identities=13% Similarity=-0.083 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CChhhHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNEVTYT 197 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~ 197 (764)
.++..+...|...|++++|...+++..+...-.++. .++..+...+...|++++|...++...+.... ++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---- 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc----
Confidence 456666777777777777777777665432111111 24555666666666666666666655432100 010
Q ss_pred HHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004273 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
......+..+..++...|++++|...+++..+........
T Consensus 86 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------- 125 (164)
T 3ro3_A 86 --------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-------------- 125 (164)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch--------------
Confidence 0012344555666677777777777777766532111110
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
.....++..+...+...|++++|.+.+++..+
T Consensus 126 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 126 ------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00014666777777778888888887777654
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.80 E-value=3.3e-05 Score=63.94 Aligned_cols=87 Identities=8% Similarity=-0.095 Sum_probs=47.4
Q ss_pred cCCcchHHHHHHHhhhcc--CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHH
Q 004273 65 RGERSRASHLLLNLGHAH--HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
.|++++|+..|++..+.+ .+-+...+..+..++...|+++.|++.|++..+.+ +.+...+..+..+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666542 11223345555556666666666666666666553 334555556666666666666666
Q ss_pred HHHHHHhhhc
Q 004273 143 NLIYFLGERY 152 (764)
Q Consensus 143 ~~~~~~~~~~ 152 (764)
..|++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6666655443
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00025 Score=59.54 Aligned_cols=55 Identities=11% Similarity=-0.074 Sum_probs=24.2
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
+...+.+.|+++.|++.|++.++.. +.+...|..+..+|.+.|++++|++.|++.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444444444444432 223334444444444444444444444443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.79 E-value=0.00036 Score=59.33 Aligned_cols=96 Identities=10% Similarity=-0.083 Sum_probs=52.4
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..|..+...+...|++++|+..|+......+ .+...+..+...+...|+++.|...++...+..+.+...+..+..+|.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3444444444455555555555554444321 133444444445555555555555555555544555556666666677
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004273 239 RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 239 ~~g~~~~A~~~~~~m~~ 255 (764)
..|+++.|...|++..+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777777665
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.79 E-value=0.00018 Score=63.75 Aligned_cols=98 Identities=10% Similarity=-0.126 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+...+.... +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34455555666666666666666666655432 123445555555556666666666666555554211 233444444
Q ss_pred HHHHhccChhHHHHHHHHHHc
Q 004273 201 KLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.++...|++++|...|+...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 444444444444444444443
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=0.00061 Score=58.71 Aligned_cols=96 Identities=13% Similarity=-0.154 Sum_probs=55.0
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004273 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (764)
..+..+...+...|+++.|.+.|++..+.. |+ ...+..+...|...|++++|+..+++..+.. +.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHH
Confidence 345555556666666666666666666543 33 4455556666666666666666666654432 123445555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhc
Q 004273 164 FLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+..++...|++++|...|+...+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555666666666666666665553
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.77 E-value=0.0003 Score=59.82 Aligned_cols=100 Identities=12% Similarity=-0.185 Sum_probs=61.1
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
.+...+..+...+...|+++.|...|+...+.. +.+...|..+...|...|++++|...|++..+.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 344456666666666666666666666666653 3345566666666666666666666666665432 2234456666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 004273 165 LGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
..+|...|++++|+..|+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666665543
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=0.00066 Score=58.49 Aligned_cols=97 Identities=8% Similarity=-0.184 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|+..++...+... .+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence 3445555555566666666666666655432 233 34445555555555555555555555544321 123333
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHc
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
..+..++...|++++|...++...+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.73 E-value=0.0003 Score=59.03 Aligned_cols=113 Identities=6% Similarity=0.004 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
.+..+...+...|+++.|...++...+..+.+...+..+..++...|+++.|...+++..+........
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------- 74 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED----------- 74 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh-----------
Confidence 455555666667777777777777766666677777888888888999999999999888743221000
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 334 (764)
......+|..+...+...|++++|.+.|++..+. .|+......+
T Consensus 75 --------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 75 --------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 0000147788888999999999999999998875 3454444333
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.72 E-value=0.00023 Score=59.17 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=51.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+.+.|++++|+..|+...+..+. +...|..+-.++...|++++|...+++..+..+.+...+..+..+|...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444455555555555555555543211 344444455555555555555555555555555555566666666666667
Q ss_pred HHHHHHHHHHHHH
Q 004273 243 LKSAYETLQHMVA 255 (764)
Q Consensus 243 ~~~A~~~~~~m~~ 255 (764)
+++|...|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.72 E-value=0.00029 Score=59.14 Aligned_cols=97 Identities=10% Similarity=-0.104 Sum_probs=49.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCC----hhhhHHH
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI-YPI----LPVYNSF 164 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~~l 164 (764)
+..+...+...|+++.|...++...+.. +.+...+..+...|...|++++|...|++..+..+- .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444555555555555555555443 234445555555555556666665555555432211 011 3345555
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 004273 165 LGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
...+.+.|++++|...|+...+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555566666666666555553
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.68 E-value=0.00026 Score=62.10 Aligned_cols=134 Identities=8% Similarity=-0.239 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCC-CCc----chHHHHHHHhhCCCChhHHHHHHHHHHHcC----ccc-c
Q 004273 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHS-LGA----DDFFHILNYCARSPDPLFVMETWRMMEEKE----IGL-N 121 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 121 (764)
...+..+...+...|++++|+..+++....... .+. ..+..+...+...|+++.|.+.+++..+.. .++ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 444555556666677777777777766543211 111 235555556666666666666666655421 000 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCC-CChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERY---GIY-PILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
...+..+...+...|++++|...+++..+.. +.. ....++..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2345555556666666666666665543211 000 011234444455555555555555555443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.61 E-value=0.00023 Score=75.05 Aligned_cols=95 Identities=8% Similarity=-0.143 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004273 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|+..|+...+..+. +...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456666666777777777777777665543 234556666667777777777777777776664321 3445555666
Q ss_pred HHHhccChhHHHH-HHHHH
Q 004273 202 LAVWQKNLSAVHE-IWEDY 219 (764)
Q Consensus 202 ~~~~~~~~~~a~~-~~~~~ 219 (764)
++...++.+++.+ ++..|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666665543 44443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.61 E-value=0.0012 Score=55.21 Aligned_cols=94 Identities=7% Similarity=-0.140 Sum_probs=48.1
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHH
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGAC 168 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~ 168 (764)
+...+...|+++.|.+.|+...+.. +.+. ..+..+..+|...|++++|...|++..+..+-.+. ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455566666666666655543 1122 34445555556666666666666655443211110 23344555555
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 004273 169 AKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~ 187 (764)
.+.|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5556666666666555543
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.56 E-value=0.00076 Score=71.09 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=114.4
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-------------hhhhHHHHHHH
Q 004273 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-------------LPVYNSFLGAC 168 (764)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~li~~~ 168 (764)
+++.|.+.|+...+.. +.....|..+...|.+.|++++|+..|++..+...-.++ ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554443331 224557888888999999999999999988764422211 47888999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH-
Q 004273 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY- 247 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 247 (764)
.+.|++++|+..|+...+.... +...|..+-.+|...|++++|...|+.+.+..+.+..++..+..++.+.++.+.+.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986433 67788889999999999999999999999988888899999999999999888775
Q ss_pred HHHHHHH
Q 004273 248 ETLQHMV 254 (764)
Q Consensus 248 ~~~~~m~ 254 (764)
..+..|.
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 3445544
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.53 E-value=0.0013 Score=55.14 Aligned_cols=60 Identities=17% Similarity=0.012 Sum_probs=30.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 128 MMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...+...|++++|...|+.+.+..+-.+. ...+..+..++.+.|++++|...|+...+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444555566666666666655443211110 024444555555556666666555555543
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.51 E-value=0.00011 Score=77.89 Aligned_cols=125 Identities=9% Similarity=-0.140 Sum_probs=85.2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc
Q 004273 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+.+.|++++|++.|++..+.... +..+|..+..++...|++++|.+.+++..+..+.+..++..+..+|...
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344445566677777777777777665322 4566777777777778888888888777777777778888888888899
Q ss_pred CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHH--HHccCCHHHHHHHHHH
Q 004273 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA--CGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 241 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 318 (764)
|++++|.+.|++..+ ..|+.. ..+..+..+ +.+.|++++|++.+++
T Consensus 88 g~~~eA~~~~~~al~--~~p~~~------------------------------~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVK--VKPHDK------------------------------DAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCT------------------------------THHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHH--hCCCCH------------------------------HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999998887 344431 245555554 7778888888888773
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.48 E-value=0.0003 Score=74.52 Aligned_cols=91 Identities=12% Similarity=-0.131 Sum_probs=47.2
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004273 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
+...+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++..+.+ +.+...|..+..+|.+.|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 3334445555666666665555542 2334555555555555555555555555554322 123344555555555555
Q ss_pred CHHHHHHHHHHHHh
Q 004273 173 SMVHANLCLDLMDS 186 (764)
Q Consensus 173 ~~~~A~~~~~~m~~ 186 (764)
++++|++.|++..+
T Consensus 89 ~~~eA~~~~~~al~ 102 (477)
T 1wao_1 89 KFRAALRDYETVVK 102 (477)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.45 E-value=0.00033 Score=57.73 Aligned_cols=87 Identities=8% Similarity=-0.101 Sum_probs=66.6
Q ss_pred CCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHH
Q 004273 99 RSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 176 (764)
..|+++.|+..|++.++.+ -+.+...+..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 3578888999999988864 24456788888889999999999999999887654 2345678888888999999999
Q ss_pred HHHHHHHHHhc
Q 004273 177 ANLCLDLMDSR 187 (764)
Q Consensus 177 A~~~~~~m~~~ 187 (764)
|+..|+.....
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999888765
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.38 E-value=0.0014 Score=66.73 Aligned_cols=125 Identities=7% Similarity=-0.215 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhc--------------CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERY--------------GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
..+..+...+.+.|++++|+..|++..+.. --+.+..+|..+..+|.+.|++++|+..++...+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 356677888889999999999888776410 011234578888888999999999999999988764
Q ss_pred CCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHH
Q 004273 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
. .+...|..+-.++...|++++|.+.++...+..+.+...+..+..++...++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2566788888889999999999999999988777788888888888877777666643
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.35 E-value=0.0014 Score=57.76 Aligned_cols=67 Identities=13% Similarity=0.037 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..|..+..++...|++++|...++...+..+.+...|..+..+|...|+++.|...|++..+ +.|+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 45566666677777777777777777776677777777778888888888888888888777 45544
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.30 E-value=0.0028 Score=55.68 Aligned_cols=95 Identities=17% Similarity=-0.068 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC-----------------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKE-----------------IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
+......+.+.|+++.|+..|...++.- -+.+...|..+..+|.+.|++++|+..++...+.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4444455555555555555555555430 01122344444444444444444444444443322
Q ss_pred CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004273 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+.+...|..+..+|...|++++|...|+....
T Consensus 94 --p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 94 --ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 12233444444444444444444444444444
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.29 E-value=0.0018 Score=55.53 Aligned_cols=113 Identities=12% Similarity=-0.063 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..+......+.+.|++++|+..|++..+-.+-.|+.. ++.. ...+...|..+-.+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------a~~~--------~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------AFDH--------AGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------CCCH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------hhhh--------ccchHHHHHHHHHH
Confidence 3445556666677777777777777665432211100 0000 00011244445555
Q ss_pred HHhccChhHHHHHHHHHHcc-------CCCCHHhH----HHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 203 AVWQKNLSAVHEIWEDYIKH-------YSLSIFSL----RKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+...|++++|...++..++- .+.+...| .....++...|++++|+..|++..+ +.|++
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p~d 135 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIEER 135 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 55555555555555555544 55566677 8888889999999999999999887 45543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00085 Score=67.52 Aligned_cols=128 Identities=13% Similarity=-0.087 Sum_probs=70.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh------------------hhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL------------------PVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
.+..+...+.+.|++++|+..|++..... |+. ..|+.+..+|.+.|++++|+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666666777777777776654332 222 267888888899999999999999888
Q ss_pred hcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH-hhccCCHHHHHHHHHHHHH
Q 004273 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 186 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 255 (764)
+... .+...|..+..++...|++++|...|+...+..+.+...+..+..+ ....+..+.+..+|..|..
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7542 2567888888889999999999999998887766677777777666 3345677788888888876
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.27 E-value=0.0082 Score=64.75 Aligned_cols=181 Identities=9% Similarity=-0.116 Sum_probs=139.3
Q ss_pred HHHHHhcCC-cchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCC----------hhHHHHHHHHHHHcCccccHHHHHH
Q 004273 59 IVDALCRGE-RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD----------PLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 59 i~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
+.+..+.|. .++|++.++.+...+ +-+...|+.--.++...++ +++++++++.+.+.+ +-+..+|+.
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344455555 468899999999876 3334456655555555555 889999999999875 557778988
Q ss_pred HHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 004273 128 MMQALCKGG--YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH-SMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 128 li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
-.-++.+.| +++++++.++++.+.+ +-|..+|+.-..++.+.| .++++++.++.+.+..+. |..+|+.....+.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~ 189 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHH
Confidence 888888999 7799999999998765 346678888777777888 899999999999887544 7778877666655
Q ss_pred hc--------------cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHH
Q 004273 205 WQ--------------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 205 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
.. +.++++.+.+.....-.|.|..+|+.+-..+.+.+..+
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 53 45688889998888888889999999888888777643
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.25 E-value=0.00052 Score=72.20 Aligned_cols=134 Identities=5% Similarity=-0.144 Sum_probs=73.4
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc---CCCC----
Q 004273 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH---HSLG---- 86 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~---~~~~---- 86 (764)
+..+..+|++++|. .++++.. .....++|-.......+++.+...|...|++++|..++++..... ..++
T Consensus 316 a~~~~~qg~~~eA~-~l~~~aL--~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 316 IDKARSEGLYHEVV-KLCRECL--EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHTTTCHHHHH-HHHHHHH--HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHhCCCHHHHH-HHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34567889999888 5555443 334455555544456666667777777777777777776654220 0111
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHc-----C--ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEK-----E--IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
..+++.|...|...|++++|..++++..+. | .+....+.+.+-.++...|.+++|+.++.++.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123555666666666666666666554431 1 111122334444455555555555555555543
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.24 E-value=0.001 Score=54.43 Aligned_cols=79 Identities=9% Similarity=-0.142 Sum_probs=47.0
Q ss_pred hHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 70 RASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
.|+..|++..+.. +.+...+..+..++...|+++.|+..|++..+.+ +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666655543 3344555566666666666666666666666653 3345556666666666666666666666554
Q ss_pred h
Q 004273 150 E 150 (764)
Q Consensus 150 ~ 150 (764)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.23 E-value=0.0021 Score=65.37 Aligned_cols=101 Identities=6% Similarity=-0.077 Sum_probs=86.2
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhc--------------CCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCC
Q 004273 160 VYNSFLGACAKLHSMVHANLCLDLMDSR--------------MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
.+..+...+.+.|++++|+..|+...+. ...| +..+|..+..++.+.|++++|.+.++...+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 5777888899999999999999988761 0112 446777888889999999999999999999888
Q ss_pred CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004273 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
.+..++..+..+|...|++++|...|++..+ +.|+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~ 340 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPED 340 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC
Confidence 8899999999999999999999999999988 45544
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.23 E-value=0.012 Score=49.94 Aligned_cols=111 Identities=7% Similarity=-0.120 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 004273 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD----YGDFDEA 598 (764)
Q Consensus 523 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A 598 (764)
++.++|+..|++..+.| .|+.. +-..|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777766 33333 4445555566777777777777764 45556666666766 6677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004273 599 LNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 599 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
.++|++..+.| ++..+..|-..|.. .++.++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 45566666666666 677777777777776655
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.22 E-value=0.017 Score=62.22 Aligned_cols=156 Identities=8% Similarity=-0.167 Sum_probs=125.6
Q ss_pred CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC----------HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004273 101 PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY----------LEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 170 (764)
...++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+.+ +-+..+|+.-...+.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 44567899999999885 4456678777666766676 999999999998764 3456688887778888
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc-ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-------
Q 004273 171 LH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK-NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL------- 240 (764)
Q Consensus 171 ~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 240 (764)
.| +++++++.++.+.+..+. +..+|+.--..+...| .++++.+.++.+.+..+.+..+|+....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 88 779999999999997644 7778887777777788 889999999999998999999999988887663
Q ss_pred -------CCHHHHHHHHHHHHHhhhcccc
Q 004273 241 -------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 241 -------g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+.++++++.+++..+ ..|+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~ 225 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPND 225 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSC
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCC
Confidence 567899999998887 56655
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.20 E-value=0.00086 Score=67.46 Aligned_cols=130 Identities=5% Similarity=-0.149 Sum_probs=78.7
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh------------------hHHHHHHHHHhccChhHHHHHHHHHH
Q 004273 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV------------------TYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
..+..+...+.+.|++++|+..|+..... .|+.. .|..+..++.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677788889999999999999998774 34443 66777778888899999999998888
Q ss_pred ccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004273 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
+..+.+..++..+..+|...|++++|...|++..+ +.|+.. ..+..+.
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~------------------------------~a~~~L~ 305 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDK------------------------------AIRRELR 305 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCH------------------------------HHHHHHH
Confidence 87777888888888899999999999988888876 344431 2444444
Q ss_pred HH-HHccCCHHHHHHHHHHHHHC
Q 004273 301 HA-CGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 301 ~~-~~~~g~~~~a~~~~~~m~~~ 322 (764)
.. ....+..+.+..+|..|...
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 43 23345566777777777653
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.15 E-value=0.0061 Score=52.31 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=54.7
Q ss_pred HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhh-------cccchhcccccccccccccCCCccCCcccchhhhHhhH---
Q 004273 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-------MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF--- 296 (764)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 296 (764)
...|+.+..++.+.|++++|+..+++..+ + .|+. ...|
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~------------------------------~~A~~~~ 104 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDE------------------------------GKLWISA 104 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTH------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCch------------------------------HHHHHHH
Confidence 34899999999999999999999999998 5 6655 2577
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 297 -SDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 297 -~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
.....++...|++++|+..|++..+
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8889999999999999999999875
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.08 E-value=0.0013 Score=69.29 Aligned_cols=59 Identities=8% Similarity=-0.112 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHc-----C-cccc-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEK-----E-IGLN-NKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
++.|..+|...|++++|..++++.++. | -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 354 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 354 LSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555555555555555555544431 1 0111 224455555555555555555555443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00058 Score=55.40 Aligned_cols=90 Identities=12% Similarity=0.005 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------h
Q 004273 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-------S 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~ 650 (764)
+...+..+...+.+.|++++|.+.|++..... +.+...|..+...+...|++++|+..+++..+ ..|+. .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 34556677777788888888888888777542 33567777788888888888888888888874 44553 2
Q ss_pred hHHHHHHHHHhcCChHHHHH
Q 004273 651 TCHFVFSGYVNCGFHNSAME 670 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~ 670 (764)
.+..+..++...|+++.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 33333334444454444433
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0013 Score=53.14 Aligned_cols=65 Identities=17% Similarity=-0.123 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|+...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666666777777777776665432 224455666666666677777777777666654
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.92 E-value=0.011 Score=50.04 Aligned_cols=110 Identities=5% Similarity=-0.164 Sum_probs=71.2
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc----cCCHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK----GGYLEEAS 142 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 142 (764)
++++|++.|++..+.+ .+. .. +...|...+.++.|.+.|++..+.| ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4567777777776665 222 22 5555555566677777777777764 55566666666666 67777777
Q ss_pred HHHHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHHhcC
Q 004273 143 NLIYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 188 (764)
++|++..+. + +...+..|-..|.. .++.++|...|+...+.|
T Consensus 82 ~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777543 2 44566666666666 677777777777776654
No 202
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.88 E-value=6.8e-07 Score=89.11 Aligned_cols=260 Identities=11% Similarity=0.043 Sum_probs=157.0
Q ss_pred HHHHHHhhcccchhhhhccccccc-hhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchH
Q 004273 12 LIADSFCKSKFHKHERRNVANKLE-LSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDF 90 (764)
Q Consensus 12 ~~~~~~~~~g~~~~a~~~~~~~~~-~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 90 (764)
..-..|-+-+...+|++.+++.+. +.|.++-..++ .....|..+..+....++..+|++-|-+ .-|++.|
T Consensus 16 ~AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~---n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y 86 (624)
T 3lvg_A 16 PRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSY 86 (624)
T ss_dssp -----------CCSTTTTCCGGGCCSTTTTTSSSSC---CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSS
T ss_pred hHHHHHHhccCcHHHHHHHHHhccccHHHHHHHHHh---CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHH
Confidence 344557777788888866666552 23333333333 2345788888888888988888876633 2467789
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004273 91 FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 170 (764)
..++.++.+.|.++..+..+.-..+. ..++.+=+.|+-+|++.++..+-.+++. .||..-...+.+-|..
T Consensus 87 ~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 87 MEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYD 156 (624)
T ss_dssp SHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHH
Confidence 99999999999999888887765554 3344555688999999998776544331 3677777778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHH
Q 004273 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
.|.++.|.-+|..+.. |.-|-..+...|++..|.+.-. -..++.+|-.+-.+|...+++..|.-.-
T Consensus 157 e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr-----KAns~ktWKeV~~ACvd~~EfrLAqicG 222 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR-----KANSTRTWKEVCFACVDGKEFRLAQMCG 222 (624)
T ss_dssp SCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT-----TCCSSCSHHHHTHHHHHSCTTTTTTHHH
T ss_pred ccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH-----hcCChhHHHHHHHHHhCchHHHHHHHhc
Confidence 8888888777765433 2223333445555554433222 2345667777777787888777665443
Q ss_pred HHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004273 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 251 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 330 (764)
-.+. +.++. ...++..|-..|.+++.+.+++.-... -....-.
T Consensus 223 LniI---vhade---------------------------------L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGm 265 (624)
T 3lvg_A 223 LHIV---VHADE---------------------------------LEELINYYQDRGYFEELITMLEAALGL-ERAHMGM 265 (624)
T ss_dssp HHHH---CCSSC---------------------------------CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHH
T ss_pred chhc---ccHHH---------------------------------HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHH
Confidence 3333 23332 223566677788888877777765521 1223345
Q ss_pred HHHHHHHHHhc
Q 004273 331 YDGFIRAIVSD 341 (764)
Q Consensus 331 ~~~li~~~~~~ 341 (764)
|+-|.-.|++-
T Consensus 266 FTELaILYsKY 276 (624)
T 3lvg_A 266 FTELAILYSKF 276 (624)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 66555555544
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.87 E-value=0.0048 Score=47.50 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=29.3
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
+..+...+...|+++.|...+++..+.. +.+...+..+...|.+.|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444444455555555555544432 22344444555555555555555555555543
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.75 E-value=0.0072 Score=49.23 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=44.7
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004273 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
+.+.++...+..+.+...+..+..+|...|++++|...|++..+ ..|+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~----------------------------- 52 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTY----------------------------- 52 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCc-----------------------------
Confidence 44455555555555556666666666666666666666666655 23332
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
...|..+..++...|++++|...|++..+
T Consensus 53 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 53 -SVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13555666666666666666666665543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.70 E-value=0.0044 Score=53.05 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=79.6
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC----------HHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD----------LKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
+.+.+++|.+.++...+..+.+...|..+..++...++ +++|+..|++..+ +.|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~------------ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKK------------ 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTC------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCc------------
Confidence 34456667777777776667777777777777776665 4699999999998 66665
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccC-----------CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ-----------NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 343 (764)
..+|..+..+|...| ++++|++.|++..+. .|+...|...+...
T Consensus 80 ------------------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~----- 134 (158)
T 1zu2_A 80 ------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----- 134 (158)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-----
T ss_pred ------------------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH-----
Confidence 258888999998764 899999999998875 67777665555533
Q ss_pred hhHHHHHHHHHHHC
Q 004273 344 LRNGMEVLKIMQQN 357 (764)
Q Consensus 344 ~~~a~~~~~~m~~~ 357 (764)
+++.+++-.+...
T Consensus 135 -~ka~el~~~~~~~ 147 (158)
T 1zu2_A 135 -AKAPQLHAEAYKQ 147 (158)
T ss_dssp -HTHHHHHHHHHHS
T ss_pred -HhCHhccCccccc
Confidence 3444444444443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.70 E-value=0.004 Score=49.32 Aligned_cols=59 Identities=15% Similarity=-0.058 Sum_probs=24.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
.+..+...|...|++++|+..|++..+.++ .+...|..+..+|.+.|++++|+..|+..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444433221 12223444444444444444444444443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.67 E-value=0.012 Score=45.26 Aligned_cols=65 Identities=14% Similarity=-0.071 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|+...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34556666667777777777777777765432 224456666666677777777777777766654
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.55 E-value=0.0088 Score=51.20 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhhcccc
Q 004273 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-----------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+++|+..|++..+-.+.+..+|..+..+|... |++++|++.|++..+ +.|+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~ 124 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCC
Confidence 45777777777777777777777888887766 489999999999988 67765
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.42 E-value=0.016 Score=45.70 Aligned_cols=65 Identities=6% Similarity=-0.078 Sum_probs=50.6
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
-++..+..+..++...|+++.|+..|++..+.+ +.+...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345567777788888888888888888888875 44566788888888888888888888887654
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.23 E-value=1.2e-06 Score=87.41 Aligned_cols=459 Identities=11% Similarity=0.112 Sum_probs=229.4
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004273 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..|..|.++....+...+|++-| ++. -|+..|..+|.+..+.|.+++-..++.-.++. ..+..+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence 344666666666666665554332 222 25556667777777777777776666544322 223345566777
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004273 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
+|++.++..+.++++. .|+..-...+-.-|...|.++.|.-+|..+. -|..|...+.+.|++..|
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is--------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC--------CCTTTSSSSSSCSGGGSS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHH
Confidence 7777776655444331 3555555566666666666666655554332 223333344555555554
Q ss_pred HHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004273 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 247 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 326 (764)
.+.-.+ .+. ..+|--+-.+|...+.+..|.-.--.++-
T Consensus 190 VdaArK-------Ans------------------------------~ktWKeV~~ACvd~~EfrLAqicGLniIv----- 227 (624)
T 3lvg_A 190 VDGARK-------ANS------------------------------TRTWKEVCFACVDGKEFRLAQMCGLHIVV----- 227 (624)
T ss_dssp TTTTTT-------CCS------------------------------SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----
T ss_pred HHHHHh-------cCC------------------------------hhHHHHHHHHHhCchHHHHHHHhcchhcc-----
Confidence 322111 000 14788888888888887766655555442
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHh
Q 004273 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406 (764)
Q Consensus 327 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~ 406 (764)
.......++..|-..|-+++...+++.-.... .....+++-|.-.|++-. +++..+.++..- +-.----+|.+|-
T Consensus 228 hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~---sriNipKviracE 302 (624)
T 3lvg_A 228 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFW---SRVNIPKVLRAAE 302 (624)
T ss_dssp CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSS---SSSCCTTTHHHHT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHH---HhccHHHHHHHHH
Confidence 22223345566777888888877777765322 235566777777777652 333222222211 1111224677777
Q ss_pred cCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 004273 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486 (764)
Q Consensus 407 ~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (764)
+..-|.++.-++..-.+ .| ++.+....+...-++-..+.+.+. -..+..+|-.-|..
T Consensus 303 ~ahLW~ElvfLY~~ydE---~D----nA~ltMi~h~~~Aw~h~~Fkdii~----------------KVaN~EiyYKAi~F 359 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEE---YD----NAIITMMNHPTDAWKEGQFKDIIT----------------KVANVELYYRAIQF 359 (624)
T ss_dssp TTTCHHHHHHHHHHHTC---HH----HHHHTTTSCHHHHCCGGGGTTTGG----------------GCSCSHHHHHHHHH
T ss_pred HHhhHHHHHHHHhcchh---HH----HHHHHHHhCChhhccHHHHHHHHH----------------HcchHHHHHHHHHH
Confidence 77777777777766544 11 111110000000000000000000 01122222222222
Q ss_pred HhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC--------C--CCCCHHHHHHHHHHHHc
Q 004273 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC--------G--IPPNAATYNIMIDCCSI 556 (764)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~--------g--~~p~~~t~~~ll~~~~~ 556 (764)
|.. ..|. ..|-|+.++...=+..++.++|++.-.. . -.-+...=.++-..|..
T Consensus 360 YL~---------------e~P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 360 YLE---------------FKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp HTT---------------SCCT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HHH---------------hChH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 221 1111 2333444443333444444444332100 0 01122233333334444
Q ss_pred cCChhHH------------HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004273 557 IRCFKSA------------SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624 (764)
Q Consensus 557 ~~~~~~a------------~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 624 (764)
..+++.- ..+-+++.++ +-...-..-...|.+.++++++.++.++ .+ .|.-.|...
T Consensus 423 EEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietA 490 (624)
T 3lvg_A 423 EEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYA 490 (624)
T ss_dssp TTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTT
T ss_pred hhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHH
Confidence 4444321 2333334333 1223333444567788888888776543 12 344455666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 004273 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 625 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
..+|+.+-|+++++-..+.| +..+|...+-.|...=+.+.++++
T Consensus 491 a~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 491 SESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 77889999999999888754 345666677777776677766654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.09 E-value=0.57 Score=46.27 Aligned_cols=142 Identities=13% Similarity=0.017 Sum_probs=81.5
Q ss_pred CCCChhhHHHHHHHHHH--cC---ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc---cC--ChhHHH---HHHHHH
Q 004273 505 TPLGTPTYNTVLHSLVE--AQ---ESHRAMEIFKQMKTCGIPPN-AATYNIMIDCCSI---IR--CFKSAS---ALVSMM 570 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~--~~---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~---~~--~~~~a~---~~~~~~ 570 (764)
.+.+...|...+.+... .+ ...+|..+|++..+. .|+ ...|..+.-+|.. .+ ...... .-++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34566778777766443 23 347889999998885 455 3344433333321 11 001111 111111
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004273 571 VRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 571 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
... .-+.+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|++++|.+.+++... +.|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 111 124456666666666666677777777777777653 6666666666777777777777777777764 45666
Q ss_pred hhH
Q 004273 650 STC 652 (764)
Q Consensus 650 ~~~ 652 (764)
.+|
T Consensus 344 ~t~ 346 (372)
T 3ly7_A 344 NTL 346 (372)
T ss_dssp HHH
T ss_pred ChH
Confidence 654
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.87 E-value=0.56 Score=38.04 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=94.7
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004273 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||-.|--....-+-+-..++++.+..-+.+ ...|++.....
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHHH
Confidence 477777777777776642 3444444444444445556666666666543322 22344444444
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhc
Q 004273 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 259 (764)
.+-.+- .+..-+...+.....+|.-++-.+++..+....+|++...-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 443322 245556677788888999999999999988888999999999999999999999999999999998875
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.66 E-value=0.16 Score=50.21 Aligned_cols=139 Identities=9% Similarity=-0.001 Sum_probs=83.9
Q ss_pred CCChhhHHHHHHHHHh--c---cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc---C-----CHHHHHHHHHHHHHh
Q 004273 190 GKNEVTYTELLKLAVW--Q---KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---R-----DLKSAYETLQHMVAL 256 (764)
Q Consensus 190 ~p~~~t~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g-----~~~~A~~~~~~m~~~ 256 (764)
+.+...|...+++... . .+..+|..+|++..+..|.....+..+..+|.-. + ........+......
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4466677776665432 2 2246777777777776666666666555554310 0 111111112211111
Q ss_pred hhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 004273 257 AMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336 (764)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 336 (764)
...|.. ..+|..+...+...|+++.|...+++....+ |+...|..+-.
T Consensus 271 ~~~~~~------------------------------a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~ 318 (372)
T 3ly7_A 271 PELNNL------------------------------SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGK 318 (372)
T ss_dssp GGGTTC------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred ccCCcC------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHH
Confidence 122222 2467777666677788888888888888864 67666666677
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC
Q 004273 337 AIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 337 ~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
.+.-.|++++|.+.|++....+..
T Consensus 319 ~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 319 VYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC
Confidence 777888888888888888776443
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.62 E-value=0.45 Score=54.11 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=60.2
Q ss_pred HhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 004273 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 566 (764)
....|++++|.++.+.. .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....+
T Consensus 662 ~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 34567788887776544 3456888888888888888888888887643 33444444455666655555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004273 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (764)
-+.....|- ++.-..+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444331 23334445555666665555443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.24 E-value=0.046 Score=56.33 Aligned_cols=86 Identities=7% Similarity=-0.019 Sum_probs=49.8
Q ss_pred cCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHH
Q 004273 557 IRCFKSASALVSMMVRD---GFYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLE-----G-IPHD-VLLYNTILK 622 (764)
Q Consensus 557 ~~~~~~a~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~ 622 (764)
.|++++|+.++++..+. -+-|+ ..+++.|..+|...|++++|+.++++.... | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35667777776665532 11121 345666777777777777777777665431 1 1122 235666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004273 623 KACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 623 ~~~~~g~~~~a~~~~~~m~~ 642 (764)
.|...|++++|+.++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777766666553
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.18 E-value=0.058 Score=42.09 Aligned_cols=57 Identities=16% Similarity=-0.041 Sum_probs=34.3
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004273 129 MQALCKGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
...+.+.|++++|+..|++..+.. +.+.. .|..+..+|.+.|++++|+..|+...+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445556666777777666665432 22334 5566666666666666666666666654
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.16 E-value=0.056 Score=55.72 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHhhh--cCCC---CC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhc-----CC-CCCh-hhHHHHHHH
Q 004273 136 GYLEEASNLIYFLGER--YGIY---PI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR-----MV-GKNE-VTYTELLKL 202 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~--~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~t~~~ll~~ 202 (764)
|++++|+.++++..+. .-+. |+ ..+++.|..+|...|++++|+.++++.... |. .|+. .+++.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5666666666554331 1111 22 235667777777777777777777665432 21 2222 356666667
Q ss_pred HHhccChhHHHHHHHHHHc
Q 004273 203 AVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~ 221 (764)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776664
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.02 E-value=0.11 Score=53.64 Aligned_cols=88 Identities=9% Similarity=-0.015 Sum_probs=46.6
Q ss_pred HHccCChhHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC---CC-HHHHHH
Q 004273 554 CSIIRCFKSASALVSMMVRDG---FYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLE---GIP---HD-VLLYNT 619 (764)
Q Consensus 554 ~~~~~~~~~a~~~~~~~~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~---p~-~~~~~~ 619 (764)
+.+.|++++|+.++++..+.. +.|+ ..+++.|..+|...|++++|+.++++.... -+. |+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 444556666666666555321 1111 345566666666666666666666655421 111 11 224555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 004273 620 ILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~ 641 (764)
|...|...|++++|+.++++.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666554
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.91 E-value=0.19 Score=38.72 Aligned_cols=66 Identities=12% Similarity=-0.076 Sum_probs=38.4
Q ss_pred CCcchHHHHHHHhhCCCC---hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004273 85 LGADDFFHILNYCARSPD---PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
.++..+..+..++...++ .+.|..++++.++.+ +-++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445444444432222 466677777666664 345556666666666777777777777766543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.86 E-value=0.03 Score=57.86 Aligned_cols=103 Identities=5% Similarity=-0.154 Sum_probs=58.9
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc---CCC
Q 004273 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH---HSL 85 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~---~~~ 85 (764)
.+...++.+.++|++++|+ .++++.. ..+..++|-.......+++.+...|...|+|++|+.++++....- ..+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~-~~~~~~L--~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVL-AMCQAII--SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHHHHHH--TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhhccHHHHH-HHHHHHH--HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 3445566677888888888 5554432 233444554444456666667777777777777777777654320 011
Q ss_pred C----cchHHHHHHHhhCCCChhHHHHHHHHHH
Q 004273 86 G----ADDFFHILNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 86 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (764)
+ ..+++.|...|...|++++|..++++..
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 1225555555555555555555555544
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.61 E-value=0.42 Score=54.41 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=23.2
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004273 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555543322 34445555555555555555555555554
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.55 E-value=0.16 Score=39.45 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHH-hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSLSIF-SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+...|++++|.+.++...+..+.+.. .+..+..+|...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555444444444 555555555555666666666665555
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.55 E-value=0.41 Score=40.40 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 004273 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYG---DFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 561 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
..+.+-|.+..+.|. ++..+...+..++++++ ++++++.+++...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444544444443 45555555666666655 4456666666665543 23 12233344445666666666666
Q ss_pred HHHHHHHCCCCCCH
Q 004273 636 IIEQMHQNKVQPDP 649 (764)
Q Consensus 636 ~~~~m~~~~~~p~~ 649 (764)
.++.+++ +.|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 6666664 45544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.20 E-value=1.6 Score=37.79 Aligned_cols=101 Identities=6% Similarity=0.030 Sum_probs=70.1
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHH
Q 004273 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 176 (764)
....|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.. -+..+.-.|.-.|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhCCHHH
Confidence 34567888888876654 366788888888888888888888888764 24555556666788777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004273 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
-.++-+.....| -++.....+...|+++++.+++...
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 776655555443 2345555566778888888877543
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.20 E-value=0.57 Score=35.92 Aligned_cols=64 Identities=14% Similarity=-0.033 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 578 QTMTYTALIKILLDYGD---FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
++..+..+..++...++ .++|..++++..... +-++..+..+...+...|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 455555555555432 22344444455555555555555555555553
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.15 E-value=4.8 Score=41.52 Aligned_cols=166 Identities=7% Similarity=0.025 Sum_probs=88.7
Q ss_pred HHHHHHhccChhHHHHHHHHHHcc-CCCC-----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhc-ccchhccccccc
Q 004273 199 LLKLAVWQKNLSAVHEIWEDYIKH-YSLS-----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGR 271 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~~~~ 271 (764)
|...+...|++.+|..++..+... ...+ ...+...++.|...+++..|..++.++...... +..
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~--------- 213 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY--------- 213 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC---------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc---------
Confidence 444555566666666666665431 1111 235566677888889999998888887532211 111
Q ss_pred ccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCcccHHHH----HHHHHhcCChhH
Q 004273 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPSSHTYDGF----IRAIVSDRGLRN 346 (764)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l----i~~~~~~~~~~~ 346 (764)
.+....-|...+..+...+++.+|...|.+.... .+.-|...+..+ +.+..-.+....
T Consensus 214 -----------------~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~ 276 (445)
T 4b4t_P 214 -----------------ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNL 276 (445)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSST
T ss_pred -----------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCch
Confidence 0111135667777788889998888888777542 111122222222 222222222222
Q ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHHHh
Q 004273 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKA--LELDLAEALLDQIS 390 (764)
Q Consensus 347 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~ 390 (764)
-..++.........++...|..++.+|... .+++.+...|....
T Consensus 277 ~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 277 QNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp THHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 223333333322334667788888888764 35666666665443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.86 E-value=0.48 Score=37.32 Aligned_cols=66 Identities=6% Similarity=-0.114 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC-----CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004273 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYG-----IYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+...+..|...+.+.|+++.|...|+...+... -.+...++..|..++.+.|+++.|+..++...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445556666666666666666655543210 112334555666666666666666666666655
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.75 E-value=0.46 Score=40.11 Aligned_cols=81 Identities=6% Similarity=-0.128 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC---CHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhccChhHH
Q 004273 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH---SMVHANLCLDLMDSRMVGK--NEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a 212 (764)
+..+++.|++..+.. +++..+.-.+..++++.+ ++++++.+|+...+.. .| ....+-.+--++.+.+++++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 334444444443221 134444444555555554 4445555555555542 12 122222233334444444444
Q ss_pred HHHHHHHHc
Q 004273 213 HEIWEDYIK 221 (764)
Q Consensus 213 ~~~~~~~~~ 221 (764)
.+.++.+.+
T Consensus 91 ~~y~~~lL~ 99 (152)
T 1pc2_A 91 LKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.71 E-value=3 Score=39.43 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=53.2
Q ss_pred HHHHHHHHHHccCCC--CHHhHHHHHHHhhcc-----CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccC
Q 004273 211 AVHEIWEDYIKHYSL--SIFSLRKFVWSFTRL-----RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 211 ~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
.|...+++..+-.+. +...|..|...|.+. |+.++|.+.|++..+ +.|+...
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~i------------------- 239 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDP------------------- 239 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCS-------------------
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCc-------------------
Confidence 444555555543333 455777777777773 788888888888777 4443100
Q ss_pred CcccchhhhHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCC
Q 004273 284 NALPVMKVLRWSFSDVIHACGRT-QNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~ 325 (764)
.++......++.. |+.+.+.+.+++.......
T Consensus 240 ----------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 240 ----------DHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp ----------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred ----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3555666666664 7778888888887776544
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.35 E-value=0.81 Score=35.95 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004273 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEG------IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+..-+..|...+.+.|+++.|...++...... -.+...++..|..++.+.|+++.|...++++.+ +.|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 34445566777777777777777777765421 123455677777777788888888888777775 456553
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.19 E-value=2.1 Score=37.09 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=27.7
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|....
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34556666666665433 245566666666666666666666666544
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.87 E-value=1.2 Score=42.13 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 004273 546 TYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY-GDFDEALNLLDLVSLE 608 (764)
Q Consensus 546 t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 608 (764)
.|..+...|.+. |+.++|.+.|++..+.+..-+..++..+.+.+++. |+.++|.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 444444444442 44555555555444432111233444444444442 4445555555544443
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.12 E-value=11 Score=38.69 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004273 171 LHSMVHANLCLDLMDSR-----MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.|+++.|++.+-.+.+. ...........++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 37788888877666542 1223344566777888888888877776665554
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.06 E-value=4.2 Score=33.10 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 004273 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 680 (764)
.....++....+|.-+.-.+++..+.. +-+|++....-+..+|.+-|+..+|.+++.+--++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444445555555555555555322 2344555555555555555555555555555555444
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.73 E-value=1.8 Score=36.11 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=16.7
Q ss_pred CChhhHHHHHHHHHHcCCh------hHHHHHHHHHHh
Q 004273 507 LGTPTYNTVLHSLVEAQES------HRAMEIFKQMKT 537 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~------~~A~~l~~~m~~ 537 (764)
.|..+|-..+...-+.|++ ++..++|++...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 3444555555555555655 555555555544
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.69 E-value=7.7 Score=42.60 Aligned_cols=53 Identities=8% Similarity=-0.018 Sum_probs=34.0
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004273 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
.+...|+++.|+++-++.+.-.|.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456666666666666666566666666666666667777777766666654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.07 E-value=1.2 Score=35.99 Aligned_cols=83 Identities=8% Similarity=-0.050 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC-CHh-hHHHHHHHHHhcCChHH
Q 004273 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV---IEFIIEQMHQNKVQP-DPS-TCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p-~~~-~~~~ll~~~~~~g~~~~ 667 (764)
..+..+.+-|.+....| .|+..+--.+.+++.+..+... ++.+++.+...+ .| +.. ..+.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555554444 2666666666677777665544 677777766532 23 222 23333347777777877
Q ss_pred HHHHHHHHHH
Q 004273 668 AMEALQVLSM 677 (764)
Q Consensus 668 a~~~~~~~~~ 677 (764)
|+++++.+..
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.46 E-value=1.3 Score=35.88 Aligned_cols=84 Identities=10% Similarity=-0.088 Sum_probs=51.4
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhH---HHHHHHHHHHcCcc-ccHHHHHHHHHHHHccCCHHHHH
Q 004273 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLF---VMETWRMMEEKEIG-LNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
....+.+.|......| .++..+-..+.-++.+..+... ++.+++.+.+.+.+ ......-.|.-++.+.|++++|+
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555565555545 3666665555556666655554 77888877776422 12233335556777888888888
Q ss_pred HHHHHHhhh
Q 004273 143 NLIYFLGER 151 (764)
Q Consensus 143 ~~~~~~~~~ 151 (764)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887764
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.14 E-value=3 Score=34.77 Aligned_cols=103 Identities=9% Similarity=0.101 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHccCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHHHHHCC
Q 004273 543 NAATYNIMIDCCSIIRCF------KSASALVSMMVRDGFYPQTM-TYTALIKI------LLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 543 ~~~t~~~ll~~~~~~~~~------~~a~~~~~~~~~~g~~p~~~-~~~~li~~------~~~~g~~~~A~~~~~~m~~~~ 609 (764)
|..++-..+....+.|+. ++.+++|++.... ++|+.. .|...|.. +...+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666666776 6777788777764 455421 12222221 123478888888888886542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004273 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 610 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
+-=...|.....--.++|+++.|.+++.+....+.+|
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2226677777777778888888888888888655443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.15 E-value=2.5 Score=46.42 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=46.8
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHH
Q 004273 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 314 (764)
.-+...|+++.|+++-++... ..|+.+ .+|..|..+|...|+++.|+-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF------------------------------~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSF------------------------------ESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCH------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhh------------------------------HHHHHHHHHHHHhccHHHHHH
Confidence 345678999999999999887 677764 699999999999999999999
Q ss_pred HHHHHH
Q 004273 315 LMLQMQ 320 (764)
Q Consensus 315 ~~~~m~ 320 (764)
.++.+.
T Consensus 393 tLNScP 398 (754)
T 4gns_B 393 AINSMP 398 (754)
T ss_dssp HHHHSC
T ss_pred HHhcCC
Confidence 998874
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.69 E-value=2.6 Score=32.11 Aligned_cols=45 Identities=7% Similarity=0.018 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004273 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
..+-++.+....+-|++.+..+.+++|.+-+++..|.++++-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555544
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.12 E-value=44 Score=37.63 Aligned_cols=210 Identities=6% Similarity=-0.050 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcc--hHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchh
Q 004273 370 SVECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYE 447 (764)
Q Consensus 370 i~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~ 447 (764)
...+.-.|+-+....++..+.+..+... .-++.-++.-.|+.+.+-.+.+.+.....|....-..+.-+|+..|.
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT--- 573 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGT--- 573 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS---
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC---
Confidence 3344566777777777776655422222 22333445567888877777777765222333222233333333332
Q ss_pred hchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhh--HHHHHHHHHHcCCh
Q 004273 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT--YNTVLHSLVEAQES 525 (764)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~ 525 (764)
+....+..++..+.... ..+......+.-++...|+.+.+.+++.......|..+ -..+.-+....|+.
T Consensus 574 --------Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 574 --------GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp --------CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred --------CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence 11233333333333221 11111111122223234444444555443322223322 22233333334443
Q ss_pred -hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---------ChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 004273 526 -HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---------CFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGD 594 (764)
Q Consensus 526 -~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~ 594 (764)
.+++.++..+.. .+|..+-...+.+++..| ++...++.+...... .-.++...-..+..+....|.
T Consensus 645 ~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 645 LQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred cHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 567777777765 345554444444444332 233333333333322 223344444555555555553
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.04 E-value=4.9 Score=30.69 Aligned_cols=62 Identities=5% Similarity=-0.092 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
|.-+..+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+.....+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44555666666666667777777777777777777777777777776654333334444443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.40 E-value=3.4 Score=41.77 Aligned_cols=67 Identities=9% Similarity=-0.091 Sum_probs=44.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCChhh
Q 004273 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVT 195 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 195 (764)
.++..+...|++++|...+..+...+ +-+...|..++.+|.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555566777777777777665544 23555777777777777777777777776544 266666554
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.64 E-value=5.5 Score=33.90 Aligned_cols=73 Identities=11% Similarity=-0.017 Sum_probs=47.2
Q ss_pred ccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc-CCCCc-------chHHHHHHHhhCCCChhHHHHHHHHHH
Q 004273 43 TMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGA-------DDFFHILNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 43 ~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (764)
.-|+.|.-..-.+...+..+...+.++.|+-+.+.+.... ..++. ..+..+..++...+++..|...|++.+
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3456676666667777888999999999999888765432 12332 135666778888899999999999875
Q ss_pred H
Q 004273 115 E 115 (764)
Q Consensus 115 ~ 115 (764)
+
T Consensus 91 q 91 (167)
T 3ffl_A 91 Q 91 (167)
T ss_dssp H
T ss_pred H
Confidence 4
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.23 E-value=5 Score=40.54 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 004273 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
...++..+...|+.++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3456667777788888887777776432 34667788888888888888888877777654 477777765
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.18 E-value=13 Score=30.20 Aligned_cols=62 Identities=5% Similarity=-0.092 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004273 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
|.-+..+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+.....+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44455566667777778888888888888888888888888888887765444444555544
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.99 E-value=30 Score=40.70 Aligned_cols=144 Identities=13% Similarity=0.026 Sum_probs=87.1
Q ss_pred HHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC---------------------
Q 004273 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP--------------------- 541 (764)
Q Consensus 483 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~--------------------- 541 (764)
++..+.+.+..+.+.++..-.. .+...--.+..+|...|++++|.+.|.+... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~--~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN--SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhHHHHHHHhhhcc--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 5555666666666665544332 2323333445567777888888888766421 111
Q ss_pred --CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004273 542 --PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 542 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
.-..-|..++..+.+.+.++.+.++-...++..-.-+ ...|..+.+.+...|++++|...+-.+.....+ ..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~ 972 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KS 972 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HH
Confidence 1112366777777778888888877776665421111 125777888888888888888888777655433 44
Q ss_pred HHHHHHHHHHHcCCHH
Q 004273 616 LYNTILKKACEKGRID 631 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~ 631 (764)
....|+...|..|..+
T Consensus 973 cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhCCChh
Confidence 6666776666665543
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.60 E-value=14 Score=29.97 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004273 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
..+-++.+....+-|++.+..+.+++|.+-+|+..|.++++-.+.+ ..+...+|..++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3344445555566677777777777777777777777777766653 3344444555543
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.07 E-value=23 Score=28.86 Aligned_cols=66 Identities=8% Similarity=-0.034 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004273 611 PHDVLLYNTILKKACEKGRI---DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 676 (764)
.|+..+--.+.+++.+..+. .+++.+++.+...+-.-.......|.-++.+.|++++|+++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555555566666666543 3566666666653311122333344447777777777777777554
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.89 E-value=11 Score=35.70 Aligned_cols=82 Identities=6% Similarity=-0.018 Sum_probs=38.2
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHcc
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~ 135 (764)
+...++.|+.+-+..+++.-.......+..-. ..+...+..|+.+ +++.+.+.|..++. .-. ..+...+..
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~ 82 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGA-TPFLLAAIA 82 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCC-CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCC-CHHHHHHHc
Confidence 44566778876655555442211111111112 3344444556654 44555566654432 112 223344456
Q ss_pred CCHHHHHHHHH
Q 004273 136 GYLEEASNLIY 146 (764)
Q Consensus 136 g~~~~A~~~~~ 146 (764)
|+.+-+..+++
T Consensus 83 ~~~~~v~~Ll~ 93 (285)
T 1wdy_A 83 GSVKLLKLFLS 93 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77665555444
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.68 E-value=60 Score=31.41 Aligned_cols=171 Identities=9% Similarity=0.114 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 004273 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI----FKQMKTCGIPPNAATYNIMI 551 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l----~~~m~~~g~~p~~~t~~~ll 551 (764)
-...|.++..-|.+.+++++|.+++... ...+.+.|+..-|-++ .+-..+.++++|..+...++
T Consensus 34 AHQ~~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 34 AAQETRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4556778888899999999999986442 2344555665554443 35556677888888888888
Q ss_pred HHHHccCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004273 552 DCCSIIRCFK-SASALVSMMVR----DG--FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624 (764)
Q Consensus 552 ~~~~~~~~~~-~a~~~~~~~~~----~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 624 (764)
..+.....-+ .=..+.+.+++ .| ..-|+.....+...|.+.+++.+|...|- . |-.+....+..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7776554322 11334444442 22 33466777788889999999999988773 2 4344446776666655
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 625 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
...+...++- ...... +--|.-.|+...|..+++.+..
T Consensus 178 ~~~~~~~e~d--------------lfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTAP--------------LYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGHH--------------HHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccHH--------------HHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 5554422211 111111 2235556777888777766654
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.12 E-value=46 Score=31.03 Aligned_cols=83 Identities=8% Similarity=0.071 Sum_probs=48.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC-CCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhH--HHHHHHHH
Q 004273 300 IHACGRTQNSGLAEQLMLQMQSL-GLQPSS---HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST--IATLSVEC 373 (764)
Q Consensus 300 i~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~ 373 (764)
+...+..|+.+-+. .+.+. |..++. ...+.+. ..+..++.....++.+.+.+.|..++... -.+.+...
T Consensus 152 L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 152 LMDAAEKGHVEVLK----ILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHTCHHHHH----HHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHH----HHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 33445566665443 44443 544433 2333443 34456666666788888888887665432 22455666
Q ss_pred HhcCCHHHHHHHHH
Q 004273 374 SKALELDLAEALLD 387 (764)
Q Consensus 374 ~~~g~~~~A~~~~~ 387 (764)
++.|+.+.+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 77888887777766
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.29 E-value=22 Score=41.88 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=55.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS----HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 370 (764)
=|..++..+-+.+.++.+.++-....+....-+. ..|..+++++...|++++|...+..+.....+ ......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 4566777777777777777766665543211111 14667777788888888888877777665543 34566677
Q ss_pred HHHHhcCCHHHHH
Q 004273 371 VECSKALELDLAE 383 (764)
Q Consensus 371 ~~~~~~g~~~~A~ 383 (764)
...+..|.++.-.
T Consensus 979 ~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 979 NQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHCCHHHHH
T ss_pred HHHHhCCChhhhh
Confidence 7777776655443
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.06 E-value=26 Score=26.66 Aligned_cols=78 Identities=17% Similarity=0.050 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004273 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (764)
..++|..+-+-+...+. ....-.+-+..+.+.|++++|..+.+.+ ..||...|.+|-. .|.|.-+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555555432 1111112223345566666666665543 3566666655432 35566666666555
Q ss_pred HHHHCC
Q 004273 604 LVSLEG 609 (764)
Q Consensus 604 ~m~~~~ 609 (764)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555444
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.50 E-value=37 Score=27.58 Aligned_cols=74 Identities=7% Similarity=-0.026 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004273 575 FYPQTMTYTALIKILLDYGD---FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 575 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
-.|++.+--.+..+++++.. ..+++.+++.+...+-.-....+--|.-|+.+.|++++|.+..+.+++ +.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 34555555556666666654 345667777666543111233444555677788888888888888774 566654
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.94 E-value=79 Score=30.62 Aligned_cols=136 Identities=10% Similarity=-0.060 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHH----HHHhh-ccCCCHHhHHHHHHHhc
Q 004273 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF----AKMRQ-KLRPDIRTYELLFSLFG 440 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~----~~m~~-~~~p~~~t~~~ll~~~~ 440 (764)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++- +-..+ ++++|..+..-++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444456677777777776554332 244556555544443 33444 77788777777766665
Q ss_pred CCCCchhhchhhhhhhhHHHHHHHHHHHHHCC--CCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNN--IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518 (764)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~ 518 (764)
....-.. ...+-+......-.+.| -.-++..-..+...|.+.+++.+|...|-- +..++...|..++.-
T Consensus 106 ~~~~~~p--------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 106 LFQPGEP--------VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYE 176 (336)
T ss_dssp TSCTTCH--------HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHH
T ss_pred hCCCCCc--------HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHH
Confidence 5432111 11111222222223322 223445555566777777777777776632 222223455444444
Q ss_pred HHHc
Q 004273 519 LVEA 522 (764)
Q Consensus 519 ~~~~ 522 (764)
+...
T Consensus 177 w~~~ 180 (336)
T 3lpz_A 177 WYKQ 180 (336)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4333
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.56 E-value=33 Score=26.12 Aligned_cols=88 Identities=14% Similarity=0.016 Sum_probs=58.8
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
.....++|..+-+.+...+. ...+--.-+..+.+.|+|++|..+.+.+. .||...|-+|-. .+.|-.+++.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHH
Confidence 34566778888777777653 33333344556778899999988876443 688888877643 5678888888
Q ss_pred HHHHHHHhcCCCCChhhH
Q 004273 179 LCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~ 196 (764)
.-+.++...| .|....|
T Consensus 90 ~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHH
Confidence 8887777665 3444444
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.98 E-value=1.5e+02 Score=33.46 Aligned_cols=118 Identities=10% Similarity=0.072 Sum_probs=57.2
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCH-HHHHH---HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004273 519 LVEAQESHRAMEIFKQMKTCGIPPNA-ATYNI---MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594 (764)
Q Consensus 519 ~~~~~~~~~A~~l~~~m~~~g~~p~~-~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 594 (764)
+...|+.+.+..+.+.+... .+. .-|.. +.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+
T Consensus 534 ll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 534 LINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSS
T ss_pred hhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCC
Confidence 33556777777777766653 222 22322 2234555666666666776666542 2233333333334444565
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 004273 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMH 641 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 641 (764)
.+.+.++++.+.+.+ .|...--..+.-+....|+. .++..++..+.
T Consensus 610 ~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 610 YTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 555566655544332 33333223333333334443 45666666665
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.94 E-value=24 Score=36.03 Aligned_cols=97 Identities=8% Similarity=-0.101 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCCHHHHHH---
Q 004273 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP--NAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTA--- 584 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~--- 584 (764)
++..+..-|.+.|+.+.|.+.|.++...-..+ -...+..+++.+...+++..+...+.++... .-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 67778899999999999999999998753222 3456777888888899999999999887643 11223322222
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHH
Q 004273 585 -LIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 585 -li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
-...+...+++.+|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 22233456788888888877654
No 261
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=69.91 E-value=63 Score=31.31 Aligned_cols=57 Identities=11% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 004273 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT----YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 362 (764)
++.+...++.|+.+.+..++ +.|..||... ++.|. ..+..|+.+ +.+.+.+.|..|+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh-~A~~~g~~~----iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLH-NAVQMSRED----IVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHH-HHHHcCCHH----HHHHHHHcCCchh
Confidence 45566667889987665554 4566665432 33444 445566654 4455556665544
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.50 E-value=18 Score=33.63 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..+.|+++.+++....-++..|.|...-..|+..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666677777777666666665
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=69.48 E-value=81 Score=30.22 Aligned_cols=173 Identities=10% Similarity=0.091 Sum_probs=105.9
Q ss_pred CcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHH----HHHHHHhCCCCCCHHHHHHH
Q 004273 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME----IFKQMKTCGIPPNAATYNIM 550 (764)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----l~~~m~~~g~~p~~~t~~~l 550 (764)
.-...|.++..-|.+.+++++|.+++... ...+.++|+...|-+ +.+-..+.+++++......+
T Consensus 31 EAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 31 EAHQTLRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34566778888889999999999886442 234456676655544 45555667888888888888
Q ss_pred HHHHHccCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004273 551 IDCCSIIRCFK-SASALVSMMVR----DG--FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623 (764)
Q Consensus 551 l~~~~~~~~~~-~a~~~~~~~~~----~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 623 (764)
+..+.....-+ .=..+++.+++ .| ..-++.....+...|.+.|++.+|...|-. |-.-|...+..++.-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHH
Confidence 87766533211 12344444442 22 223677788888889999999888877642 211134566666555
Q ss_pred HHHc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004273 624 ACEK---GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 624 ~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
+... |...++--++-+. +--|.-.|+...|..+++....+
T Consensus 175 w~~~~~~~~~~e~dlf~~Ra---------------VL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEFFSRL---------------VFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTCCCHHHHHHHHHHH---------------HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHHH
Confidence 5544 4433322221111 22355677888888888876544
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.33 E-value=31 Score=26.19 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=58.8
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004273 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
.....++|..+-+.+...+. ...+--.-+..+.+.|+|++|..+.+.+. .||...|-+|- -.+.|-.+++.
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le 88 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALC--EWHLGLGAALD 88 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHH--HHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHH
Confidence 34566778888777777653 33333344556778899999988766442 68888887764 35778888888
Q ss_pred HHHHHHHhcCCCCChhhH
Q 004273 179 LCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~ 196 (764)
.-+.++..+| .|....|
T Consensus 89 ~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHH
Confidence 8887777765 3444444
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.23 E-value=24 Score=26.76 Aligned_cols=78 Identities=17% Similarity=0.037 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004273 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (764)
..++|..+-+-+...+. ....-.+-+..+.+.|++++|..+.+.+ ..||...|.+|- -.|.|.-+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 34555555555554432 1111112222344556666666555443 356666655443 235566666655555
Q ss_pred HHHHCC
Q 004273 604 LVSLEG 609 (764)
Q Consensus 604 ~m~~~~ 609 (764)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555444
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.87 E-value=18 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhh
Q 004273 653 HFVFSGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 653 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
.-+-.+|.+.|++++|+.+++.+..+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 335568899999999999998765444
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.08 E-value=53 Score=28.99 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004273 592 YGDFDEALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
++...++.++|..|..+|+.-. ..-|......+...|++++|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3445677777777766665543 335566666666677777777777776666666633
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.27 E-value=1e+02 Score=29.51 Aligned_cols=170 Identities=11% Similarity=0.061 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHH----HHHHhh-ccCCCHHhHHHHHHHhc
Q 004273 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI----FAKMRQ-KLRPDIRTYELLFSLFG 440 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l----~~~m~~-~~~p~~~t~~~ll~~~~ 440 (764)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ .+-..+ +++++......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444556666777777766555432 24455665554443 333344 67777777766666555
Q ss_pred CCCCchhhchhhhhhhhHHHHHHHHHHHHHCCC--CCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004273 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI--QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518 (764)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~ 518 (764)
....-.. ...+-+........+.|- .-++.....+...|.+.+++.+|...|--. ...|...+..++.-
T Consensus 104 ~~p~~~~--------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 104 ELDPSEP--------NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWD 174 (312)
T ss_dssp TCCTTCT--------THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHH
T ss_pred HCCCCCc--------hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 4332111 112222222333333322 235556666777788888888888776422 11123344444443
Q ss_pred HHHc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 004273 519 LVEA---QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571 (764)
Q Consensus 519 ~~~~---~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 571 (764)
+... |...++ +...-.+++. |.-.++...|..+|+...
T Consensus 175 w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 175 WLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 3333 322221 1111222232 334577777777777654
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.43 E-value=23 Score=32.99 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=41.0
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004273 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
...+.|+++.+++....-++.. +-|......++..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456678888888777777764 557777778888888888888888887776543
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.61 E-value=43 Score=30.37 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=7.2
Q ss_pred ccCCHHHHHHHHHHHHh
Q 004273 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
+.|+.+....+++.+.+
T Consensus 18 ~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 34444444444443333
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=59.34 E-value=74 Score=26.23 Aligned_cols=67 Identities=7% Similarity=-0.044 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004273 611 PHDVLLYNTILKKACEKGRI---DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.|+..+--.+.+++.++.+. .+++.+++.+...+-.-.....+.|.-++.+.|++++|+++.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555566666666543 45666666666532111222333344477777777777777776543
No 272
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.23 E-value=41 Score=30.37 Aligned_cols=19 Identities=16% Similarity=-0.048 Sum_probs=9.8
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 004273 370 SVECSKALELDLAEALLDQ 388 (764)
Q Consensus 370 i~~~~~~g~~~~A~~~~~~ 388 (764)
+...+..|+.+.+..+++.
T Consensus 181 L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444555666555555444
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.85 E-value=61 Score=28.61 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004273 558 RCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612 (764)
Q Consensus 558 ~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 612 (764)
+...+...+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335677777777777655433 3456666777777777777777777777666566
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.64 E-value=2.1e+02 Score=30.87 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=11.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC
Q 004273 339 VSDRGLRNGMEVLKIMQQNNLKP 361 (764)
Q Consensus 339 ~~~~~~~~a~~~~~~m~~~~~~~ 361 (764)
...|+++.|++.++. .++-|
T Consensus 549 ~~~g~~~~AL~~i~~---L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMEL---LDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHH---TSCSC
T ss_pred HHcCCHHHHHHHHHh---CCCCC
Confidence 466777777655544 34555
No 275
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=57.59 E-value=92 Score=31.51 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=8.4
Q ss_pred HHHHhcCCHHHHHHHHH
Q 004273 371 VECSKALELDLAEALLD 387 (764)
Q Consensus 371 ~~~~~~g~~~~A~~~~~ 387 (764)
...+..|+.+.+..+++
T Consensus 250 ~~A~~~g~~~~v~~Ll~ 266 (437)
T 1n11_A 250 HLAAQEGHAEMVALLLS 266 (437)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHh
Confidence 33445566555544443
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.57 E-value=54 Score=32.19 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=18.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHh
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
....+|.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34466777777778888877777663
No 277
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=57.30 E-value=81 Score=26.01 Aligned_cols=73 Identities=7% Similarity=-0.009 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004273 576 YPQTMTYTALIKILLDYGD---FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 576 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
.|+..+-..+..++.++.. ..+++.+++.+...+-.-.....--|.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 4566665566667776664 345667777766532111222333455577888888888888888885 567654
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.30 E-value=1.3e+02 Score=28.27 Aligned_cols=44 Identities=7% Similarity=-0.155 Sum_probs=18.6
Q ss_pred hCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004273 98 ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
+..|+.+.+ +.+.+.|..++...-...+...+..|+.+-+..++
T Consensus 39 ~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 39 IADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345555433 33344444333221122333444556655554444
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.79 E-value=1.6e+02 Score=29.32 Aligned_cols=91 Identities=10% Similarity=-0.149 Sum_probs=47.9
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCc-----chHHHHHHHhhCCCChhHHHHHHHHHHHcC--ccccHHHHH----
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA-----DDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYL---- 126 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~---- 126 (764)
++.-|...|++.+|..++..+.+.=...|. ..|..-++.|...++...+...+....... +.+++....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 345556677777777777666543212221 124445566666677777777776655421 222222211
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHH
Q 004273 127 LMMQALC-KGGYLEEASNLIYFL 148 (764)
Q Consensus 127 ~li~~~~-~~g~~~~A~~~~~~~ 148 (764)
.-...+. ..++|..|...|-+.
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHH
Confidence 1122334 567777776666554
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.15 E-value=92 Score=31.63 Aligned_cols=62 Identities=6% Similarity=-0.048 Sum_probs=33.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhc-CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERY-GIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
+...+...|.+.|++++|.+.|.++.+.. +...-...+-.+++.+...+++..+...+....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44455666666666666666666664321 111112345555666666666666666665554
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.22 E-value=1e+02 Score=25.83 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHH
Q 004273 633 IEFIIEQMHQNKVQPDPST-CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFED 696 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (764)
+..+|..|..+|+--.... |......+...|++++|.++++ .|+.....+...+......
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~----~Gi~~~A~P~~rL~~~~~~ 144 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ----RGIQNQAEPREFLQQQYRL 144 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHTTCBSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHcCCccHHHHHHHHHH
Confidence 5666666666665544333 3333445566666666666666 4444444444443333333
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.94 E-value=1.7e+02 Score=28.01 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCC--HHHHHHHHHHHhh-ccCCCH
Q 004273 366 IATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDK--PERAIKIFAKMRQ-KLRPDI 429 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~-~~~p~~ 429 (764)
...++.-|...|+.++|.+.++++.... ...+...+..++-+.++ .+....++..+.. |+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 3478888888899999999999986422 23334455555555433 4556788888876 654443
No 283
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=50.96 E-value=1.7e+02 Score=27.99 Aligned_cols=54 Identities=6% Similarity=0.054 Sum_probs=27.9
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcc----hHHHHHHHhhCCCChhHHHHHHHHHHHcCccc
Q 004273 58 QIVDALCRGERSRASHLLLNLGHAHHSLGAD----DFFHILNYCARSPDPLFVMETWRMMEEKEIGL 120 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 120 (764)
.+...++.|+.+-+..+++ .|..++.. -+..| ...+..|+.+ +.+.+++.|..+
T Consensus 28 ~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpL-h~A~~~g~~~----iv~~Ll~~ga~~ 85 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPL-HNAVQMSRED----IVELLLRHGADP 85 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHH-HHHHHcCCHH----HHHHHHHcCCch
Confidence 3555677888766655554 34334321 12333 3334556654 445555666444
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.48 E-value=81 Score=28.42 Aligned_cols=152 Identities=10% Similarity=-0.025 Sum_probs=72.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHH
Q 004273 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 313 (764)
+...+..|+.+....+++.+.+.+..++.... .-+ +.+...+..|+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~----------------------------~g~-t~L~~A~~~~~~~--- 60 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----------------------------LRQ-TPLHLAVITTLPS--- 60 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT----------------------------TSC-CHHHHHHHTTCHH---
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc----------------------------cCC-CHHHHHHHcCCHH---
Confidence 33455678887777777766665555443100 011 2334445566664
Q ss_pred HHHHHHHHCCCCCCcccH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 314 QLMLQMQSLGLQPSSHTY--DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS--TIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
+++.+.+.|..++.... .+.+...+..|+.+-+..+++.....++.++.. .-.+.+...+..|+.+.+..+++.-
T Consensus 61 -~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 139 (241)
T 1k1a_A 61 -VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139 (241)
T ss_dssp -HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred -HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 44455556655544321 233444556677665555554433211122211 1113344455667776666665543
Q ss_pred hhCC--CCcchHHHHHHHhcCCCHHHHHHHH
Q 004273 390 SRCT--NPKPFSAFLAACDTMDKPERAIKIF 418 (764)
Q Consensus 390 ~~~~--~~~~~~~li~~~~~~g~~~~a~~l~ 418 (764)
.... +.....+.+...+..|+.+-+..++
T Consensus 140 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 170 (241)
T 1k1a_A 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170 (241)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred CCcccccccCCCcHHHHHHHcCCHHHHHHHH
Confidence 2221 2112223444445566655444333
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.34 E-value=1.1e+02 Score=24.80 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=39.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HHHHHHHHHHHHhcCCC
Q 004273 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MVHANLCLDLMDSRMVG 190 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 190 (764)
...++.-|...|+.++|.+.++++... ......+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p--~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456777888888888888888887421 11123344555555555432 35667777777665544
No 286
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=47.27 E-value=1.1e+02 Score=27.18 Aligned_cols=19 Identities=5% Similarity=-0.200 Sum_probs=10.4
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 004273 165 LGACAKLHSMVHANLCLDL 183 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~ 183 (764)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556666665555544
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.11 E-value=2e+02 Score=29.77 Aligned_cols=60 Identities=10% Similarity=-0.102 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC-ccccH--HHH-HHHHHHHHccCCHHHHHHHHHHHh
Q 004273 90 FFHILNYCARSPDPLFVMETWRMMEEKE-IGLNN--KCY-LLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
+|.+++.|...+.++.|..+..+..--. ..+|. ..| -.+...+.-.+++.+|.+.|....
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6777777777777777777777653110 01111 112 234555666777777777777654
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=46.17 E-value=1.5e+02 Score=29.80 Aligned_cols=296 Identities=9% Similarity=0.017 Sum_probs=135.9
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcch--HHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADD--FFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALC 133 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 133 (764)
+...+..|+.+-+..+++. |..++... ....|...+..|+.+-+. .+.+.|..++. .-. ..+...+
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~-t~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQ-TPLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSC-CHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCC-CHHHHHH
Confidence 4445677887666555543 43333221 223444444567765444 44444543322 222 2344455
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChh--hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhccC
Q 004273 134 KGGYLEEASNLIYFLGERYGIYPILP--VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN---EVTYTELLKLAVWQKN 208 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~ 208 (764)
..|+.+-+.-+++. |..|+.. ...+.+...++.|+.+.+..+++. +..++ ...+ +.+...+..|+
T Consensus 89 ~~g~~~~v~~Ll~~-----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~-t~L~~A~~~g~ 158 (437)
T 1n11_A 89 RIGHTNMVKLLLEN-----NANPNLATTAGHTPLHIAAREGHVETVLALLEK----EASQACMTKKGF-TPLHVAAKYGK 158 (437)
T ss_dssp HHTCHHHHHHHHHH-----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSC-CHHHHHHHTTC
T ss_pred HCCCHHHHHHHHhC-----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCC-CHHHHHHHcCC
Confidence 67887766555543 3333321 122344455667888776666543 32222 1222 23444566777
Q ss_pred hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004273 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
.+-+.-+++.-..-...+..-. +.+...+..|+.+ +++.+.+.|..++....
T Consensus 159 ~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~----------------------- 210 (437)
T 1n11_A 159 VRVAELLLERDAHPNAAGKNGL-TPLHVAVHHNNLD----IVKLLLPRGGSPHSPAW----------------------- 210 (437)
T ss_dssp HHHHHHHHHTTCCTTCCCSSCC-CHHHHHHHTTCHH----HHHHHGGGTCCSCCCCT-----------------------
T ss_pred HHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCCcCC-----------------------
Confidence 7766555543211111111111 2233445566654 34444555544433100
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhH
Q 004273 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 365 (764)
..+ +.+...+..|+.+-+ +.+.+.|..++.. ..+. +...+..|+.+-+ +.+.+.|..++...
T Consensus 211 -----~g~-t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~~~~~~~~~ 275 (437)
T 1n11_A 211 -----NGY-TPLHIAAKQNQVEVA----RSLLQYGGSANAESVQGVTP-LHLAAQEGHAEMV----ALLLSKQANGNLGN 275 (437)
T ss_dssp -----TCC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHTTTCCTTCCC
T ss_pred -----CCC-CHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCH-HHHHHHCCCHHHH----HHHHhcCCCCCCCC
Confidence 011 223444566776544 4444555444332 2233 3344556665543 44445554433221
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHH
Q 004273 366 --IATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 366 --~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l 417 (764)
-.+.+...++.|+.+-+..+++.-.... +..-++.|.. .+..|+.+-+.-+
T Consensus 276 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~~~~v~~L 330 (437)
T 1n11_A 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV-ASHYGNIKLVKFL 330 (437)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH-HHHSSCSHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHH-HHHcCcHHHHHHH
Confidence 1133445567788877766665422211 3333444443 3455665544333
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.92 E-value=72 Score=27.77 Aligned_cols=14 Identities=0% Similarity=0.064 Sum_probs=7.3
Q ss_pred HccCCHHHHHHHHH
Q 004273 133 CKGGYLEEASNLIY 146 (764)
Q Consensus 133 ~~~g~~~~A~~~~~ 146 (764)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34555555555543
No 290
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=44.47 E-value=1e+02 Score=27.73 Aligned_cols=12 Identities=0% Similarity=-0.233 Sum_probs=4.9
Q ss_pred HHHHHHCCCCCC
Q 004273 316 MLQMQSLGLQPS 327 (764)
Q Consensus 316 ~~~m~~~g~~p~ 327 (764)
++.+.+.|..++
T Consensus 160 ~~~Ll~~g~~~~ 171 (237)
T 3b7b_A 160 AEILLAAKCDLH 171 (237)
T ss_dssp HHHHHTTTCCTT
T ss_pred HHHHHHcCCCCC
Confidence 333444444433
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.09 E-value=2.1e+02 Score=29.58 Aligned_cols=135 Identities=17% Similarity=0.109 Sum_probs=77.4
Q ss_pred cccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC-CCCc--chH-HHHHHHhhCCCChhHHHHHHHHHHHcC
Q 004273 42 TTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH-SLGA--DDF-FHILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 42 ~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~ 117 (764)
.++..+++-....++.+++.|...+.++.|..+..+..-... ..+. .+| ..+.+.+.-.+++.+|.+.+....+.-
T Consensus 221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 345566666677888999999999999999999998752110 1111 123 345566677799999999988877642
Q ss_pred ccccH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH
Q 004273 118 IGLNN-------KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183 (764)
Q Consensus 118 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 183 (764)
+++. .++..++-+-.-.|++.+ ..+|. ..+.......|..|..++ +.|++..-..+++.
T Consensus 301 -p~~~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 301 -PHNSKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp -SCSSSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred -CcchhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 2221 122122222112355443 22232 111111233466677665 56887766665544
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.52 E-value=1.5e+02 Score=25.12 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004273 598 ALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
+.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444443332 2233333334444444444444444444444444
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.27 E-value=1.2e+02 Score=27.17 Aligned_cols=52 Identities=6% Similarity=-0.059 Sum_probs=23.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchhHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 004273 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI--ATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
.+...+..|+.+-+. .+.+.|..++.... .+.+....+.|+.+.+..+++..
T Consensus 180 ~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 180 ALHWAVLAGNTTVIS----LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHHHTCHHHHH----HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 344455566655333 33344544432211 12344445556665555554443
No 294
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=42.41 E-value=86 Score=28.19 Aligned_cols=113 Identities=10% Similarity=0.012 Sum_probs=56.8
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCccc--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhH--HHHHHHHHHhcC
Q 004273 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHT--YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST--IATLSVECSKAL 377 (764)
Q Consensus 302 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g 377 (764)
..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++... -.+.+...++.|
T Consensus 117 ~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 188 (237)
T 3b7b_A 117 WATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAAREN 188 (237)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhC
Confidence 344556654 4445555665544331 122344444556544 4555566665554322 123455556677
Q ss_pred CHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 378 ELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 378 ~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
+.+.+.-+++.-.... +..- .+-+......|+...++++.+.+++
T Consensus 189 ~~~~v~~Ll~~gad~~~~d~~g-~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 189 RYDCVVLFLSRDSDVTLKNKEG-ETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTS-CCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHcCCCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7766655554321110 1111 2344455667777777777777653
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.37 E-value=94 Score=29.74 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCc
Q 004273 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS---HTYDGFIRAIVSDRG--LRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~ 362 (764)
...+.++.-|...|+.++|...++++. .|.- .....+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~----~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHC----CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcC----CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 456678888888888888888888875 2311 112222233333222 3445666777766665543
No 296
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.61 E-value=1.5e+02 Score=25.52 Aligned_cols=104 Identities=8% Similarity=-0.029 Sum_probs=52.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH-ccCCHH
Q 004273 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG-RTQNSG 310 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~ 310 (764)
+.+...+..|+.+.-.++.+.+.+.|..++.... .-++.|..++. ...+..
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~----------------------------~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTK----------------------------EGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT----------------------------TCCCTHHHHHHHCTTCHH
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC----------------------------CCCcHHHHHHHcCCcchh
Confidence 3444555666666666777777777777664211 11222222221 123344
Q ss_pred HHHHHHHHHHHCCCCCCcccH--H-HHHHHHHhcCCh-hHHHHHHHHHHH-CCCCCch
Q 004273 311 LAEQLMLQMQSLGLQPSSHTY--D-GFIRAIVSDRGL-RNGMEVLKIMQQ-NNLKPQD 363 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~t~--~-~li~~~~~~~~~-~~a~~~~~~m~~-~~~~~~~ 363 (764)
...++.+.+.+.|..++.... . +.+...+..+.. ..-..+++.+.+ .|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp HHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred hHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence 556777777888876665432 1 223322232222 234456666666 6655543
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.36 E-value=1.1e+02 Score=27.92 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=12.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHH
Q 004273 648 DPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 648 ~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
+.......++.+.+.|+-++|.++|
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLF 114 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHH
Confidence 3333344445555555555555444
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.35 E-value=1.4e+02 Score=24.87 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004273 597 EALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
++.++|..|..+|+--. ..-|......+...|++++|.++|+.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36667777766665543 335566666666777777777777776666666633
No 299
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.80 E-value=2.8e+02 Score=27.13 Aligned_cols=203 Identities=11% Similarity=-0.011 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCC--hhHHHHHHHHHHHcCccccHHHHHH
Q 004273 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD--PLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
.-......++..|-..++.++|...++.+.... ........++......++ -+.+-.++..+.. ++-+.......
T Consensus 52 e~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~--~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~g 128 (358)
T 3eiq_C 52 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKS 128 (358)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCG--GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCch--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 444556667888999999999999999975422 112222333333222222 2235555555553 44444444444
Q ss_pred HHHHHHccCCH----HHHHHH----HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH---HHh----------
Q 004273 128 MMQALCKGGYL----EEASNL----IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL---MDS---------- 186 (764)
Q Consensus 128 li~~~~~~g~~----~~A~~~----~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~---------- 186 (764)
....+....+. ..|..+ +.++.....++|.... ...... .-..+.++++. +..
T Consensus 129 f~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~-~~~~~~-----~~~~~~~~l~~a~~~L~~~~~~~~~~~ 202 (358)
T 3eiq_C 129 FDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID-SYKGTV-----DCVQARAALDKATVLLSMSKGGKRKDS 202 (358)
T ss_dssp HHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTG-GGC--------CCHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHH-HHhhcc-----cchHHHHHHHHHHHHHhccchHHHHHH
Confidence 44444333321 123332 3333333334443221 110000 11112222221 111
Q ss_pred -c----CCCCCh---hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC--CHHHHHHHHHHHHHh
Q 004273 187 -R----MVGKNE---VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR--DLKSAYETLQHMVAL 256 (764)
Q Consensus 187 -~----g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 256 (764)
. |..|.. .....+|.-|...+|.++|.+.++.+........++...+..+.-+.+ ..+...+++..+.+.
T Consensus 203 ~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 203 VWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 0 112221 235778899999999999999999986432223445555666665544 345677888888876
Q ss_pred hhccc
Q 004273 257 AMMGK 261 (764)
Q Consensus 257 ~~~~~ 261 (764)
|+-+.
T Consensus 283 glls~ 287 (358)
T 3eiq_C 283 STITI 287 (358)
T ss_dssp TCSCH
T ss_pred CCCCH
Confidence 65443
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.71 E-value=92 Score=26.08 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=39.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HHHHHHHHHHHHhcCCC
Q 004273 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MVHANLCLDLMDSRMVG 190 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 190 (764)
..+.++.-|...|+.++|.+.++++... ......+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456777888888888888888887421 11123344555555555322 45666777777665544
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.46 E-value=1.7e+02 Score=24.76 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=36.8
Q ss_pred HHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhh
Q 004273 633 IEFIIEQMHQNKVQPDPSTCH-FVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLI 698 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (764)
...+|..|..+|+--....|+ .....+-..|++.+|.++++ .|+.....+...+......|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~----~Gi~~~A~P~~~L~~~~~~F~ 141 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ----EGIQQKAEPLERLQSQHRQFQ 141 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHTTCBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHcCCCcHHHHHHHHHHHH
Confidence 566777777777665544433 34446666777777777777 444445445544444444443
No 302
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.27 E-value=2.1e+02 Score=25.06 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHHHHH---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 004273 515 VLHSLVE---AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559 (764)
Q Consensus 515 li~~~~~---~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 559 (764)
+|+++.+ -.+.+.|+-.+-+|.+.| .|.-+.=..++.+....|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 4555544 467888888888888888 6655555555555555543
No 303
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.81 E-value=2.3e+02 Score=25.20 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=11.7
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 004273 166 GACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..|.+.|.+++|.++|++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345555666666666655544
No 304
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=36.32 E-value=4.3e+02 Score=28.24 Aligned_cols=116 Identities=14% Similarity=-0.042 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHH----HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH
Q 004273 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
.+.+.|...|....+... .+......+-. .....+...++...+..... ...+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 477889998888865432 23333222222 22233424556666665433 2333333444455556789999999
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004273 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
..|+.|........ ...--+.+++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~~~~--------------------------------r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKD--------------------------------EWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSH--------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccH--------------------------------hHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988865221111 1233566777888999999999998864
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.96 E-value=2e+02 Score=26.21 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=21.6
Q ss_pred CCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004273 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.+++......+..+.+.|+-+.|..+|-+...
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 44455555666677777888888877777654
No 306
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.26 E-value=4.5e+02 Score=28.26 Aligned_cols=85 Identities=12% Similarity=0.222 Sum_probs=46.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcC---------------C-HHHHHHHHHHHHHC-----C
Q 004273 588 ILLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKG---------------R-IDVIEFIIEQMHQN-----K 644 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g---------------~-~~~a~~~~~~m~~~-----~ 644 (764)
-+...|++++|..+|.... ..|. .+.|.++.-....- + ...|.++.+..... .
T Consensus 452 ~ae~~G~~~dAi~LY~La~----~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~ 527 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAE----EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQ 527 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHhc----CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhh
Confidence 4456778888888777642 2222 23343333332211 1 23455555543322 2
Q ss_pred CCC-CHhhHHHHHH-----HHHhcCChHHHHHHHHHHH
Q 004273 645 VQP-DPSTCHFVFS-----GYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 645 ~~p-~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~ 676 (764)
+.+ +..|+..|+. .+.+.|+|+.|++.++++.
T Consensus 528 ~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 528 IHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 222 4456666654 3478999999999888753
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.85 E-value=79 Score=26.81 Aligned_cols=71 Identities=7% Similarity=-0.103 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhccChh
Q 004273 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
+.+.+-+.+.....|++++. .-..++..+...+..-.|.++++.+.+. ++..+..|...-|..+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444455544555666543 3445566666667777888888888776 66667777666667676666543
No 308
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=33.36 E-value=2.1e+02 Score=26.58 Aligned_cols=17 Identities=6% Similarity=-0.142 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHH
Q 004273 128 MMQALCKGGYLEEASNL 144 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~ 144 (764)
.+...+..|+.++..++
T Consensus 18 ~lH~Aa~~g~~~~~~~~ 34 (285)
T 3d9h_A 18 GSHMASMDGKQGGMDGS 34 (285)
T ss_dssp -----------------
T ss_pred HHHHHhhcCCCCCcccC
Confidence 33344444555444443
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.20 E-value=1.4e+02 Score=26.80 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChHHHHHHHH
Q 004273 632 VIEFIIEQMHQNKVQPDPSTCH-FVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 632 ~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~ 673 (764)
....+|..|..+|+--....|+ .....+...|++.+|.++|+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555555555544433322 23334555566666665555
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.03 E-value=1.6e+02 Score=23.65 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=15.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
..+.++.-|...|+.++|...++++.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 44555666666666666666666653
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.37 E-value=1.3e+02 Score=24.90 Aligned_cols=62 Identities=10% Similarity=0.001 Sum_probs=40.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004273 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 604 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.+..|..+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 35557777765322 333444455556678888888877666667778777777777777544
No 312
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.59 E-value=75 Score=27.60 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=8.3
Q ss_pred HHHHHHHHHH-CCCCCC
Q 004273 633 IEFIIEQMHQ-NKVQPD 648 (764)
Q Consensus 633 a~~~~~~m~~-~~~~p~ 648 (764)
-..+++.+++ .|..++
T Consensus 132 ~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 132 MIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp HHHHHHHHHTSTTCCTT
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 3445555555 555553
No 313
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=29.78 E-value=4e+02 Score=26.10 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=11.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 004273 127 LMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~ 148 (764)
.+|.-|...|+.++|.+.++++
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 4444455555555555555544
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.47 E-value=1.2e+02 Score=25.12 Aligned_cols=62 Identities=10% Similarity=-0.012 Sum_probs=41.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004273 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
+.+.+.|+++...= ..++..+...+ .-.|.++++.+.+.+...+..|.+..|..+...|-+.
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 34555788776542 22333444445 5678899999988777778888877777777777543
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.35 E-value=2.3e+02 Score=24.77 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=29.3
Q ss_pred HHHHHHH---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004273 515 VLHSLVE---AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 515 li~~~~~---~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 558 (764)
+|+++.+ -.+.+.|+-.+-+|.+.|-.|.-+.=..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4555544 4788888888888888887666555555555555444
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.34 E-value=1.4e+02 Score=21.42 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=32.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004273 605 VSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664 (764)
Q Consensus 605 m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 664 (764)
+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|.+..+..+...|-
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4455666655433 3334444333 344566677777665555566666666666665554
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.92 E-value=1.4e+02 Score=24.83 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=40.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004273 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
+.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.+..|..+...|-+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3455577766543 23344455556666778888888887776778888877777777777654
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.47 E-value=1e+02 Score=28.17 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=30.0
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcch-------HHHHHHHhh--CCCChhHHHHHHHHH
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGADD-------FFHILNYCA--RSPDPLFVMETWRMM 113 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 113 (764)
+...++.|+.+....+++.+.+.+..++... ...|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4456677888877777777666665444332 233333322 446555554444443
No 319
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.35 E-value=24 Score=27.98 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=54.4
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004273 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
|.++++|++++.+..+ ...|--.+...+..++.+-|.++++.+.+.| +...+.+++-.|-..=+++-+
T Consensus 16 ykkN~rw~qSI~L~Kk---------DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvV 83 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 83 (125)
T ss_dssp SSSCCCCSSCCCCCSC---------CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHH
T ss_pred hhccccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHH
Confidence 6678888888766422 2356677888888999999999999998887 666777888888777777777
Q ss_pred HHH
Q 004273 142 SNL 144 (764)
Q Consensus 142 ~~~ 144 (764)
+++
T Consensus 84 LEl 86 (125)
T 3qil_A 84 LEL 86 (125)
T ss_dssp HHT
T ss_pred HHH
Confidence 664
No 320
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.12 E-value=35 Score=27.04 Aligned_cols=71 Identities=20% Similarity=0.079 Sum_probs=52.0
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHH
Q 004273 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY 96 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 96 (764)
|.+-+|+++++ .+..+- +.|... |...+..++.+-|.++++-..+.| +...|.+.|-.
T Consensus 16 ykkN~rw~qSI-~L~KkD---kLykDA---------------ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~Lyt 73 (125)
T 3qil_A 16 PRGSHMWKQSV-ELAKKD---SLYKDA---------------MQYASESKDTELAEELLQWFLQEE---KRECFGACLFT 73 (125)
T ss_dssp SSSCCCCSSCC-CCCSCC---CCSSHH---------------HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHH
T ss_pred hhccccHHHHH-HHHHhc---ccHHHH---------------HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHH
Confidence 56677888888 665554 434433 555667899999999999998876 66788899988
Q ss_pred hhCCCChhHHHHH
Q 004273 97 CARSPDPLFVMET 109 (764)
Q Consensus 97 ~~~~~~~~~a~~~ 109 (764)
|-..=+++-++++
T Consensus 74 CYdLlrpDvVLEl 86 (125)
T 3qil_A 74 CYDLLRPDVVLEL 86 (125)
T ss_dssp HTTCSCTTHHHHT
T ss_pred HHhccChHHHHHH
Confidence 8877777766544
No 321
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.06 E-value=3e+02 Score=24.34 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=33.3
Q ss_pred hHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 004273 511 TYNTVLHSLVE---AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559 (764)
Q Consensus 511 ~~~~li~~~~~---~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 559 (764)
..--+|+++.| -.+.+.|+-.+-+|.+.|-.|.-+.=..++.+....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 33345666654 47888999999999998877766665666666555553
No 322
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.83 E-value=3.1e+02 Score=24.11 Aligned_cols=82 Identities=5% Similarity=-0.009 Sum_probs=38.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHHHhhCC------------CCcchHH
Q 004273 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDST--IATLSVECSKALELDLAEALLDQISRCT------------NPKPFSA 400 (764)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~~ 400 (764)
+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.+ +..-++.
T Consensus 125 L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp 200 (232)
T 2rfa_A 125 LSFAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200 (232)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH
T ss_pred HHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH
Confidence 33344455543 3344445555443321 1234455566677776655555555443 1122233
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 004273 401 FLAACDTMDKPERAIKIFAKM 421 (764)
Q Consensus 401 li~~~~~~g~~~~a~~l~~~m 421 (764)
+...++.|+.+-+..+++.-
T Consensus 201 -l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 201 -FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp -HHHHHHHTCHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHhcC
Confidence 33444556666555555443
No 323
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.70 E-value=1.4e+02 Score=24.22 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=40.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004273 605 VSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 605 m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.+..|..+...|-+.
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4557777765432 3344444444 56678889998888777778888777777777766544
No 324
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.87 E-value=3.2e+02 Score=23.95 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=10.2
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 004273 129 MQALCKGGYLEEASNLIYF 147 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~ 147 (764)
+...+..|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455666666655553
No 325
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.83 E-value=1.8e+02 Score=20.86 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=29.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004273 535 MKTCGIPPNAATYNIMIDCCSIIR-CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594 (764)
Q Consensus 535 m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 594 (764)
|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|.-..+..+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445565555443 23444444433 344555666666555444455554455555555543
No 326
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.80 E-value=1.4e+02 Score=25.01 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=17.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 004273 295 SFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
..+.++.-|...|+.++|...++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 55566666766777777777776664
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.51 E-value=2.1e+02 Score=23.16 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=25.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004273 535 MKTCGIPPNAATYNIMIDCCSIIR-CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593 (764)
Q Consensus 535 m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 593 (764)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555444332 2233333333 44455555555555544444444333344444444
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.91 E-value=1.2e+02 Score=26.15 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=17.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch
Q 004273 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 330 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 363 (764)
-.+.+..++........-.++.+.+.+.|..++.
T Consensus 140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 3444444443333233345666667777765543
No 329
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.61 E-value=1.4e+02 Score=27.22 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCC
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLG 86 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~ 86 (764)
+...+..|+.+.+..+++.+...+..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 4445677888777777777766665444
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.33 E-value=2.5e+02 Score=23.01 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHC
Q 004273 561 KSASALVSMMVRD 573 (764)
Q Consensus 561 ~~a~~~~~~~~~~ 573 (764)
-.|.++++.+.+.
T Consensus 38 ~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 38 PTADDIYKALEGK 50 (145)
T ss_dssp CCHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHh
Confidence 3344444444433
No 331
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.19 E-value=54 Score=22.20 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChh
Q 004273 135 GGYLEEASNLIYFLGERYGIYPILP 159 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~ 159 (764)
.-+++.|...|.++.....++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4478888888888766666766643
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.19 E-value=1.5e+02 Score=24.63 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=42.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004273 603 DLVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.+..|..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345567877775433 2333444444 55678999999988777778888888888888877654
No 333
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.79 E-value=1.7e+02 Score=22.14 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHH
Q 004273 377 LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 377 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 415 (764)
...+.|.++++.+..+ .+.+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~r-G~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETR-GSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTS-CTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHc-ChHHHHHHHHHHHHcCcHHHHH
Confidence 3567777777777776 6677777777777666655443
No 334
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.35 E-value=1.3e+02 Score=20.30 Aligned_cols=23 Identities=17% Similarity=-0.037 Sum_probs=15.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCC
Q 004273 170 KLHSMVHANLCLDLMDSRMVGKN 192 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~ 192 (764)
..|+++.|+..|-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 34777777777777766655554
No 335
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.75 E-value=2.9e+02 Score=24.51 Aligned_cols=47 Identities=11% Similarity=-0.058 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHcCccccH-------HHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004273 104 LFVMETWRMMEEKEIGLNN-------KCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
+.|+.+|+.+.+.-..++. ..-...+..|.+.|.+++|.++|++...
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 4789999988876421211 1222456678999999999999999864
No 336
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.62 E-value=2.4e+02 Score=23.29 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=15.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004273 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 593 (764)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33445555555554443334333333334444443
No 337
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=23.60 E-value=5.5e+02 Score=25.46 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=43.9
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHH
Q 004273 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404 (764)
Q Consensus 325 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~ 404 (764)
.|....+..++.++ ..+++.....++..... .+..|......+-..+- .--...+.++...-..++...+...
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~-----~Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYD-----TMLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHH-----HHHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHH-----HHHHHHHHHHhHhhceeeHHHHHHH
Confidence 35555555566554 55677666666655432 24445443211111110 0001112222222255566666655
Q ss_pred HhcCCCHHHHHHHHHHHhh
Q 004273 405 CDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 405 ~~~~g~~~~a~~l~~~m~~ 423 (764)
+.- ..+++...+.+|..
T Consensus 326 l~l--s~~evE~~L~~lI~ 342 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMIL 342 (394)
T ss_dssp HTC--CHHHHHHHHHHHHH
T ss_pred HCc--CHHHHHHHHHHHHH
Confidence 543 67888888888876
No 338
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.23 E-value=7e+02 Score=26.56 Aligned_cols=326 Identities=7% Similarity=-0.087 Sum_probs=165.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcc-hHHHHHHHhhCCCChhHHHHHHHHHHHc-CccccHHHHHHHHHHHHccC
Q 004273 59 IVDALCRGERSRASHLLLNLGHAHHSLGAD-DFFHILNYCARSPDPLFVMETWRMMEEK-EIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 136 (764)
+....+.|++..+..+-..+... +..+. .|..+..... .....++..+ +.+. |.+.....-+.-+..+.+.+
T Consensus 13 a~~a~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l~-~~~~~ev~~F---l~~~~~~p~~~~Lr~~~l~~l~~~~ 86 (618)
T 1qsa_A 13 IKQAWDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDLM-NQPAVTVTNF---VRANPTLPPARTLQSRFVNELARRE 86 (618)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTGG-GCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCcc-cCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHHhCC
Confidence 55567789998888887766432 22221 3444433222 1234434333 3333 22334455567778888889
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHH
Q 004273 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
++.....++.. .+.+...--....+....|+..+|......+=..| ......+..++..+.+.|.+.... ++
T Consensus 87 ~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~-~~ 158 (618)
T 1qsa_A 87 DWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA-YL 158 (618)
T ss_dssp CHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH-HH
T ss_pred CHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH-HH
Confidence 98877774431 12233333335556777899888888777776655 335667888888888777664322 22
Q ss_pred HHHHcc-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhh
Q 004273 217 EDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 217 ~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
..+... ...+...-..++... ..+.-..+.. +..+.+ .|...... . ...+........
T Consensus 159 ~R~~~al~~~~~~~a~~l~~~l-~~~~~~~a~~-~~al~~---~p~~~~~~-----~-----------~~~~~~~~~~~~ 217 (618)
T 1qsa_A 159 ERIRLAMKAGNTGLVTVLAGQM-PADYQTIASA-IISLAN---NPNTVLTF-----A-----------RTTGATDFTRQM 217 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC-CGGGHHHHHH-HHHHHH---CGGGHHHH-----H-----------HHSCCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-CHHHHHHHHH-HHHHHh---ChHhHHHH-----H-----------hccCCChhhHHH
Confidence 222211 111111111121111 1111111111 111111 11110000 0 000000000011
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004273 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV----SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 296 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
+...+.-+.+. +.+.|...|....... ..+......+-...+ ..+...++...+....... .+.....-.+.
T Consensus 218 ~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r 293 (618)
T 1qsa_A 218 AAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVR 293 (618)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHH
Confidence 22223334443 7899999999887543 223333333333333 3343456666666655433 23334445555
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC-CCcc-hHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004273 372 ECSKALELDLAEALLDQISRCT-NPKP-FSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
...+.|+++.|...|..|.... +..- .-=+..++...|+.++|..+|.....
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5668899999999999997642 1111 11134566788999999999998865
No 339
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.15 E-value=2e+02 Score=23.36 Aligned_cols=152 Identities=13% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHhccChhHHHHHHHHHH--ccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004273 197 TELLKLAVWQKNLSAVHEIWEDYI--KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
.+.+...+..|+.+.+..+++. . .....+..-.+.|.. +..|+.+ +++.+.+.|..++....
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~--~~~~~~~----~v~~Ll~~g~~~~~~~~--------- 66 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV--MMFGSTA----IALELLKQGASPNVQDT--------- 66 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH--SCTTCHH----HHHHHHHTTCCTTCCCT---------
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH--HHcCCHH----HHHHHHHCCCCCCCcCC---------
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004273 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
.-.+.+...+..|+.+-+.-+++ ....+......-.+.+...+..|+.+-+.-+++.
T Consensus 67 --------------------~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~- 123 (156)
T 1bd8_A 67 --------------------SGTSPVHDAARTGFLDTLKVLVE--HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123 (156)
T ss_dssp --------------------TSCCHHHHHHHTTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-
T ss_pred --------------------CCCCHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-
Q ss_pred HHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004273 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 389 (764)
..+......-.+.+...+..|+.+-+.-+++.+
T Consensus 124 --~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 156 (156)
T 1bd8_A 124 --SDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156 (156)
T ss_dssp --SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred --cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhhC
No 340
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.67 E-value=2.5e+02 Score=26.16 Aligned_cols=106 Identities=8% Similarity=-0.028 Sum_probs=48.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhH--HHHHHHHHHhcCCH
Q 004273 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST--IATLSVECSKALEL 379 (764)
Q Consensus 303 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~ 379 (764)
.+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.
T Consensus 132 A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~ 203 (285)
T 3d9h_A 132 ACVSGSWD----CVNLLLQHGASVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQR 203 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH
T ss_pred HHHcCHHH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 34455554 3444445554443221 223344445566655 3444445555443221 11344555667777
Q ss_pred HHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHH
Q 004273 380 DLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 380 ~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l 417 (764)
+.+..+++.-.... +..-. +.+...++.|+.+-+..+
T Consensus 204 ~~v~~Ll~~ga~~~~~~~g~-t~L~~A~~~~~~~~v~~L 241 (285)
T 3d9h_A 204 ACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLL 241 (285)
T ss_dssp HHHHHHHHTTCCTTCCBTTB-CHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHH
Confidence 76666655422111 22222 334444556665544333
No 341
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.23 E-value=3.2e+02 Score=24.02 Aligned_cols=152 Identities=12% Similarity=0.002 Sum_probs=72.5
Q ss_pred HHHhccCcHHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcc
Q 004273 485 KALGAEGMIRELIQYFCDSKTPL---GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG----IPPNAATYNIMIDCCSII 557 (764)
Q Consensus 485 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~ 557 (764)
...++.|+.+.+..+++..+..+ |..-++.+ ...+..|+.+-+..+++.-.... -..|..-.+.+. ..+..
T Consensus 8 ~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~-~A~~~ 85 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL-HIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH-IAVIN 85 (232)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH-HHHHT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH-HHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH-HHHHc
Confidence 34456677777777776533322 22233333 33455677766665555422110 001112222333 33445
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 004273 558 RCFKSASALVSMMVRDGFYPQTM----------------TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL--LYNT 619 (764)
Q Consensus 558 ~~~~~a~~~~~~~~~~g~~p~~~----------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ 619 (764)
|+.+ +++.+.+.|..++.. -.+.| ...+..|+.+-+.-++ +.|..++.. .-.+
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t 156 (232)
T 2rfa_A 86 QNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEEIVRLLI----EHGADIRAQDSLGNT 156 (232)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCC
T ss_pred CCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCC
Confidence 6654 344445555544432 22233 3334456654444333 345444321 1122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004273 620 ILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
.+...+..|+.+.+..+++.+.+.|..+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3344556778777777777777776543
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.85 E-value=2.7e+02 Score=25.15 Aligned_cols=18 Identities=0% Similarity=-0.064 Sum_probs=9.0
Q ss_pred HhhccCCHHHHHHHHHHH
Q 004273 236 SFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~m 253 (764)
..++.|+.+-+..++++-
T Consensus 231 ~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 231 MAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhC
Confidence 344556655554444443
No 343
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.67 E-value=2.8e+02 Score=24.24 Aligned_cols=7 Identities=0% Similarity=-0.097 Sum_probs=2.8
Q ss_pred ccCCHHH
Q 004273 134 KGGYLEE 140 (764)
Q Consensus 134 ~~g~~~~ 140 (764)
..|+.+-
T Consensus 34 ~~g~~~~ 40 (223)
T 2f8y_A 34 RYSRSDA 40 (223)
T ss_dssp HTTCHHH
T ss_pred HcCCHHH
Confidence 3444433
No 344
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.54 E-value=2.7e+02 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=11.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004273 564 SALVSMMVRDGFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 592 (764)
.++.+++...|+.|+..+..-++..|...
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 33334444444444444444444444333
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.38 E-value=1.7e+02 Score=24.71 Aligned_cols=52 Identities=8% Similarity=-0.113 Sum_probs=29.6
Q ss_pred hcCCcchHHHHHHHhhhccCCC--CcchHHHHHH-Hh-----hCCCChhHHHHHHHHHHH
Q 004273 64 CRGERSRASHLLLNLGHAHHSL--GADDFFHILN-YC-----ARSPDPLFVMETWRMMEE 115 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 115 (764)
..|++-+|.++|+.+......+ ....|..||+ .. .+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888877654333 2233444444 11 134666666666666544
No 346
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.35 E-value=1.9e+02 Score=23.99 Aligned_cols=47 Identities=2% Similarity=-0.023 Sum_probs=28.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccCh
Q 004273 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
.++..+...+..-.|.++++.+.+.++..+..|....|..+...|-+
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44445555555667777777777666666666666666656555543
No 347
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.11 E-value=1.6e+02 Score=24.31 Aligned_cols=57 Identities=18% Similarity=0.019 Sum_probs=33.5
Q ss_pred hcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccCh
Q 004273 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 151 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..|++++.. -..++..+...+ .-.|.++++.+.+.++..+..|....|..+...|-+
T Consensus 12 ~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 12 QRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345554432 233444444445 567777777777776666676666666666655543
Done!