Query 004274
Match_columns 764
No_of_seqs 219 out of 1378
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 20:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 100.0 1.5E-61 3.2E-66 517.4 19.1 133 573-761 166-300 (390)
2 KOG0698 Serine/threonine prote 99.9 3.3E-24 7.1E-29 227.3 17.0 117 575-763 113-235 (330)
3 PF00481 PP2C: Protein phospha 99.9 2.1E-23 4.6E-28 210.5 15.5 119 575-763 70-193 (254)
4 PLN03145 Protein phosphatase 2 99.9 2.7E-22 5.8E-27 216.3 16.8 117 576-763 139-261 (365)
5 PTZ00224 protein phosphatase 2 99.8 2.2E-19 4.8E-24 194.9 14.2 100 580-755 86-186 (381)
6 KOG0697 Protein phosphatase 1B 99.7 1.6E-16 3.4E-21 165.8 8.8 111 573-753 94-204 (379)
7 KOG0699 Serine/threonine prote 99.6 5.6E-16 1.2E-20 166.0 6.8 85 606-755 328-412 (542)
8 COG0631 PTC1 Serine/threonine 99.5 3.8E-14 8.3E-19 146.6 7.4 108 576-756 80-187 (262)
9 smart00332 PP2Cc Serine/threon 99.5 5.8E-13 1.3E-17 131.6 12.6 117 575-762 73-189 (255)
10 cd00143 PP2Cc Serine/threonine 99.4 1.6E-12 3.5E-17 127.5 13.0 118 574-762 69-186 (254)
11 KOG1323 Serine/threonine phosp 99.2 3.2E-11 7E-16 129.0 10.8 194 538-763 187-396 (493)
12 PRK14559 putative protein seri 99.2 2.8E-11 6E-16 139.7 9.4 60 577-638 455-514 (645)
13 PF13672 PP2C_2: Protein phosp 97.2 0.0012 2.7E-08 64.8 8.6 35 604-638 93-127 (212)
14 KOG0618 Serine/threonine phosp 96.8 0.00094 2E-08 80.4 4.4 89 608-763 609-707 (1081)
15 smart00331 PP2C_SIG Sigma fact 95.1 0.052 1.1E-06 52.7 6.5 31 607-637 84-116 (193)
16 KOG1379 Serine/threonine prote 91.9 0.34 7.3E-06 53.3 6.4 32 607-638 166-199 (330)
17 PF07228 SpoIIE: Stage II spor 76.2 12 0.00025 36.2 7.8 31 608-638 60-92 (193)
18 smart00332 PP2Cc Serine/threon 68.3 10 0.00022 38.0 5.6 46 289-334 18-63 (255)
19 PF08682 DUF1780: Protein of u 67.8 0.87 1.9E-05 46.4 -2.0 18 314-331 183-200 (208)
20 cd00143 PP2Cc Serine/threonine 67.8 8.9 0.00019 38.1 5.0 47 290-336 14-61 (254)
21 COG0631 PTC1 Serine/threonine 40.5 47 0.001 35.2 5.2 46 290-336 22-69 (262)
22 PF05053 Menin: Menin; InterP 40.3 14 0.00031 43.9 1.4 22 291-313 169-190 (618)
23 PF06347 SH3_4: Bacterial SH3 28.8 51 0.0011 26.6 2.5 21 294-316 26-46 (55)
24 PF06296 DUF1044: Protein of u 26.8 73 0.0016 30.9 3.6 31 282-312 45-78 (120)
25 TIGR02865 spore_II_E stage II 25.6 1.5E+02 0.0032 36.6 6.7 32 607-638 634-667 (764)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-61 Score=517.42 Aligned_cols=133 Identities=54% Similarity=0.825 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCceEEEEEEECCeEEEEEcCCccEEEEecCCCCCCCCCCCcccc
Q 004274 573 HDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDD 652 (764)
Q Consensus 573 h~~VlrAL~rAf~~TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~ 652 (764)
|.+|++||.+||++||++|++++++++..+|++++|||||+|++|++.+|||||+|||||||++...++
T Consensus 166 ~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~----------- 234 (390)
T KOG0700|consen 166 HGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNG----------- 234 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCC-----------
Confidence 678999999999999999999999999999999999999999999999999999999999998876211
Q ss_pred ccccccchhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCcee
Q 004274 653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF 732 (764)
Q Consensus 653 l~~r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ 732 (764)
..|.|+|||+||++++++|++||+++||||+.+|+
T Consensus 235 ---------------------------------------------~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv 269 (390)
T KOG0700|consen 235 ---------------------------------------------SWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVV 269 (390)
T ss_pred ---------------------------------------------CeEEEEecChhhccccHHHHHHHHHhCCCCcceEe
Confidence 12689999999999999999999999999999999
Q ss_pred cC--cccCccccccccccCcccccCccccCc
Q 004274 733 ND--RVKGQLKVTRAFGAGFLKKMGFTSTSA 761 (764)
Q Consensus 733 ng--RVkG~LaVTRAFGDg~LKqPkvn~ap~ 761 (764)
++ ||||.|+|||||||++||+|++|..|.
T Consensus 270 ~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l 300 (390)
T KOG0700|consen 270 NKHWRVKGILQVSRAFGDGYLKWPEFNQEPL 300 (390)
T ss_pred eccceeeEEEEeeeeccceeecchhhccchh
Confidence 87 999999999999999999999995443
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=3.3e-24 Score=227.26 Aligned_cols=117 Identities=38% Similarity=0.501 Sum_probs=101.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhccCcccccCCceEEEEEEECC-eEEEEEcCCccEEEEecCCCCCCCCCCCcccc
Q 004274 575 AVLRAMAQALE-STEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQ-DVYVMNLGDSRAILAQERPNDRHPNPSFLKDD 652 (764)
Q Consensus 575 ~VlrAL~rAf~-~TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~-dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~ 652 (764)
++.+||.++|. +++.+|++. ......+|||+++++++.+ ++||||||||||||++.+.
T Consensus 113 ~~~~a~~~~F~~~~D~~~~~~-------~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~------------- 172 (330)
T KOG0698|consen 113 DVKDALRRAFLTKTDSEFLEK-------REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGG------------- 172 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCC-------------
Confidence 46778999999 699999765 1223468999999999955 9999999999999998741
Q ss_pred ccccccchhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCcee
Q 004274 653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF 732 (764)
Q Consensus 653 l~~r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ 732 (764)
.+++||.||+|..++|+.||++.+ +.|.
T Consensus 173 ------------------------------------------------~a~~Ls~DHkP~~~~E~~RI~~~G----G~v~ 200 (330)
T KOG0698|consen 173 ------------------------------------------------VAVQLSVDHKPDREDERERIEAAG----GRVS 200 (330)
T ss_pred ------------------------------------------------eeeeCCCCCCCCcHHHHHHHHHcC----CEEE
Confidence 689999999999999999999999 7776
Q ss_pred c----CcccCccccccccccCcccccCccccCccc
Q 004274 733 N----DRVKGQLKVTRAFGAGFLKKMGFTSTSAMR 763 (764)
Q Consensus 733 n----gRVkG~LaVTRAFGDg~LKqPkvn~ap~vr 763 (764)
. +||.|.|+|||||||..||.+.++..|+|.
T Consensus 201 ~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~ 235 (330)
T KOG0698|consen 201 NWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQ 235 (330)
T ss_pred EcCCcceEeceEEEeeecCCHHhcCCcEecCCceE
Confidence 4 499999999999999999999999999874
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.90 E-value=2.1e-23 Score=210.49 Aligned_cols=119 Identities=35% Similarity=0.440 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhccCcccccCCceEEEEEEECCeEEEEEcCCccEEEEecCCCCCCCCCCCccccc
Q 004274 575 AVLRAMAQALES-TEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDS 653 (764)
Q Consensus 575 ~VlrAL~rAf~~-TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l 653 (764)
.+.+||..+|.+ +++.+...... + +...+||||+|+||.++++||||||||||||++...
T Consensus 70 ~~~~al~~a~~~~~~~~~~~~~~~----~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~-------------- 130 (254)
T PF00481_consen 70 DIEEALRQAFLAFTDESLYSDSEN----N-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGG-------------- 130 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----H-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTE--------------
T ss_pred chhhcccceeeecccccccccccc----c-ccccccccccccccccceeEEEeeeeeeeeeeeccc--------------
Confidence 467788899988 88888764221 1 345799999999999999999999999999999861
Q ss_pred cccccchhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCcee-
Q 004274 654 RHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF- 732 (764)
Q Consensus 654 ~~r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~- 732 (764)
...+||+||+|.+++|+.||+++| +.+.
T Consensus 131 -----------------------------------------------~~~~Lt~dH~~~~~~E~~RI~~~g----g~v~~ 159 (254)
T PF00481_consen 131 -----------------------------------------------IIKQLTRDHKPSNPDERERIRKAG----GRVSE 159 (254)
T ss_dssp -----------------------------------------------EEEESS---STTSHHHHHHHHHTT-----GEEE
T ss_pred -----------------------------------------------cccccccccccchhhccceeeccc----ccccc
Confidence 115999999999999999999999 5555
Q ss_pred cCcccCccccccccccCcccc---cCccccCccc
Q 004274 733 NDRVKGQLKVTRAFGAGFLKK---MGFTSTSAMR 763 (764)
Q Consensus 733 ngRVkG~LaVTRAFGDg~LKq---Pkvn~ap~vr 763 (764)
++||.|.|+|||||||..+|+ +.++..|+|.
T Consensus 160 ~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~ 193 (254)
T PF00481_consen 160 NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDIS 193 (254)
T ss_dssp TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEE
T ss_pred chhhhhccccccccccccccccccceeeeecccc
Confidence 899999999999999999999 8999999875
No 4
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.88 E-value=2.7e-22 Score=216.34 Aligned_cols=117 Identities=26% Similarity=0.447 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCceEEEEEEECCeEEEEEcCCccEEEEecCCCCCCCCCCCccccccc
Q 004274 576 VLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRH 655 (764)
Q Consensus 576 VlrAL~rAf~~TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l~~ 655 (764)
+.++|.+||.+++++|++.. ..+.. ..||||++++||.++.+||||||||||||++.+
T Consensus 139 ~~~al~~af~~~d~~~~~~~----~~~~~-~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g----------------- 196 (365)
T PLN03145 139 IEKVVSSAFLQTDTAFAEAC----SLDAS-LASGTTALAALVVGRSLVVANAGDCRAVLCRRG----------------- 196 (365)
T ss_pred HHHHHHHHHHHHhHHHHhhh----ccccC-CCCcCcEEEEEEECCeEEEEecCCceEEEEcCC-----------------
Confidence 44578899999999987642 12222 349999999999999999999999999999865
Q ss_pred cccchhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecCc
Q 004274 656 KNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDR 735 (764)
Q Consensus 656 r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ngR 735 (764)
.++|||+||++..+.|+.||++.+ +.|.++|
T Consensus 197 ---------------------------------------------~~~~LT~DH~~~~~~E~~RI~~~G----g~v~~g~ 227 (365)
T PLN03145 197 ---------------------------------------------KAIEMSRDHKPMCSKERKRIEASG----GYVYDGY 227 (365)
T ss_pred ---------------------------------------------eEEEecCCCCCCCHHHHHHHHHcC----Cceecce
Confidence 578999999999999999999988 7888899
Q ss_pred ccCccccccccccCcccccC------ccccCccc
Q 004274 736 VKGQLKVTRAFGAGFLKKMG------FTSTSAMR 763 (764)
Q Consensus 736 VkG~LaVTRAFGDg~LKqPk------vn~ap~vr 763 (764)
+.|.|.|||||||..+|..+ +...|+|.
T Consensus 228 v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~ 261 (365)
T PLN03145 228 LNGQLNVARALGDWHMEGMKGSDGGPLSAEPELM 261 (365)
T ss_pred ECCccccccccccccccccccccCCCcceEEEEE
Confidence 99999999999999887542 55666653
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.80 E-value=2.2e-19 Score=194.91 Aligned_cols=100 Identities=31% Similarity=0.403 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccCCceEEEEEEE-CCeEEEEEcCCccEEEEecCCCCCCCCCCCcccccccccc
Q 004274 580 MAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMK-DQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNR 658 (764)
Q Consensus 580 L~rAf~~TEeafLe~~dk~l~enpeLalmGSTALVaLIk-g~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l~~r~~ 658 (764)
|.++|..++++|++.. ...|||++++++. ++.+||||||||||||++.+
T Consensus 86 l~~a~~~~d~~i~~~~----------~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g-------------------- 135 (381)
T PTZ00224 86 MEELCLEIDEEWMDSG----------REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG-------------------- 135 (381)
T ss_pred HHHHHHHHHHHHHhcc----------cCCCCeEEEEEEEECCEEEEEEcccceEEEEECC--------------------
Confidence 5567778888886431 1359999998876 68999999999999999754
Q ss_pred chhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecCcccC
Q 004274 659 SRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKG 738 (764)
Q Consensus 659 S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ngRVkG 738 (764)
++.|||.||++.++.|+.||.+++ +.+..+||.|
T Consensus 136 ------------------------------------------~~~~LT~DH~~~~~~E~~RI~~~g----g~v~~~Rv~G 169 (381)
T PTZ00224 136 ------------------------------------------KLVFATEDHKPNNPGERQRIEACG----GRVVSNRVDG 169 (381)
T ss_pred ------------------------------------------EEEEcccCCCCCCHHHHhHHHHcc----CEeccccccC
Confidence 578999999999999999999987 6777889999
Q ss_pred ccccccccccCcccccC
Q 004274 739 QLKVTRAFGAGFLKKMG 755 (764)
Q Consensus 739 ~LaVTRAFGDg~LKqPk 755 (764)
.|.|||||||..+|.++
T Consensus 170 ~l~vTRalGd~~~K~~~ 186 (381)
T PTZ00224 170 DLAVSRAFGDRSFKVKG 186 (381)
T ss_pred ceeeecccCCccccccc
Confidence 99999999999887654
No 6
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-16 Score=165.85 Aligned_cols=111 Identities=26% Similarity=0.391 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCceEEEEEEECCeEEEEEcCCccEEEEecCCCCCCCCCCCcccc
Q 004274 573 HDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDD 652 (764)
Q Consensus 573 h~~VlrAL~rAf~~TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~ 652 (764)
-+.+.+.|+..|.++++....+.+ ...+...+||||+++++-..++|++|+|||||||++.+
T Consensus 94 v~~~~~GIrtGFL~iDE~mr~~~~----~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng-------------- 155 (379)
T KOG0697|consen 94 VENVEKGIRTGFLSIDEIMRTLSD----ISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG-------------- 155 (379)
T ss_pred HHHHHhhHhhcceeHHHHHhhhhh----hhcccccCCceEEEEEecCceEEEEecCcchhheecCC--------------
Confidence 346888899999999887655432 22233349999999999999999999999999999876
Q ss_pred ccccccchhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCcee
Q 004274 653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF 732 (764)
Q Consensus 653 l~~r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ 732 (764)
.++--|.||+|..|.|++||.++| +.|+
T Consensus 156 ------------------------------------------------~~~f~TqDHKP~~p~EkeRIqnAG----GSVM 183 (379)
T KOG0697|consen 156 ------------------------------------------------EVVFSTQDHKPYLPKEKERIQNAG----GSVM 183 (379)
T ss_pred ------------------------------------------------ceEEeccCCCCCChHHHHHHhcCC----CeEE
Confidence 345568999999999999999999 8899
Q ss_pred cCcccCccccccccccCcccc
Q 004274 733 NDRVKGQLKVTRAFGAGFLKK 753 (764)
Q Consensus 733 ngRVkG~LaVTRAFGDg~LKq 753 (764)
-.||+|.|+|+|||||..||.
T Consensus 184 IqRvNGsLAVSRAlGDydyK~ 204 (379)
T KOG0697|consen 184 IQRVNGSLAVSRALGDYDYKN 204 (379)
T ss_pred EEEecceeeeehhccCccccc
Confidence 999999999999999999995
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.61 E-value=5.6e-16 Score=165.99 Aligned_cols=85 Identities=36% Similarity=0.511 Sum_probs=77.6
Q ss_pred ccCCceEEEEEEECCeEEEEEcCCccEEEEecCCCCCCCCCCCccccccccccchhhhhhhhhhcccccCcccccchhhh
Q 004274 606 ALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVN 685 (764)
Q Consensus 606 almGSTALVaLIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l~~r~~S~~~~~~~~Leri~eeSp~~~~~~e~~ 685 (764)
..+|||++|+|+.+.+|||||.|||||||++.+
T Consensus 328 ~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~G----------------------------------------------- 360 (542)
T KOG0699|consen 328 EDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNG----------------------------------------------- 360 (542)
T ss_pred CCCCceEEEEEecCceEEEecCCCcceEEecCC-----------------------------------------------
Confidence 458999999999999999999999999999876
Q ss_pred ccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecCcccCccccccccccCcccccC
Q 004274 686 MMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKMG 755 (764)
Q Consensus 686 ~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ngRVkG~LaVTRAFGDg~LKqPk 755 (764)
+|+.|+.||+|.++.|..||.++|+ ++-++|||+|.|.++|||||++||.-.
T Consensus 361 ---------------kAvdmS~DHKPEDevE~~RI~~AGG---~vtlDGRVNGGLNLSRA~GDHaYK~N~ 412 (542)
T KOG0699|consen 361 ---------------KAVDMSVDHKPEDEVETNRIHAAGG---QVTLDGRVNGGLNLSRAFGDHAYKKNQ 412 (542)
T ss_pred ---------------ceeecccCCCcccHHHHHHHHhcCC---eEeecceecCccchhhhhhhhhhhccc
Confidence 6889999999999999999999992 455699999999999999999999643
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.49 E-value=3.8e-14 Score=146.56 Aligned_cols=108 Identities=29% Similarity=0.353 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCceEEEEEEECCeEEEEEcCCccEEEEecCCCCCCCCCCCccccccc
Q 004274 576 VLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRH 655 (764)
Q Consensus 576 VlrAL~rAf~~TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l~~ 655 (764)
..+.|.+++..+++++..... .+.+...||||++++++.++++||||||||||||++.+
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~~----~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~----------------- 138 (262)
T COG0631 80 LEELLKEAILKANEAIAEEGQ----LNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG----------------- 138 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----cccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC-----------------
Confidence 677899999999999987633 34566789999999999999999999999999999886
Q ss_pred cccchhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecCc
Q 004274 656 KNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDR 735 (764)
Q Consensus 656 r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ngR 735 (764)
.+.|||.||++.++.|++||...+ +++...|
T Consensus 139 ---------------------------------------------~~~~lT~DH~~~~~~~~~~~~~~~----~~~~~~~ 169 (262)
T COG0631 139 ---------------------------------------------ELKQLTEDHSLVNRLEQRGIITPE----EARSHPR 169 (262)
T ss_pred ---------------------------------------------ceEEeccCCcHHHHHHHhcCCCHH----HHHhCcc
Confidence 578999999999999999987765 3333344
Q ss_pred ccCccccccccccCcccccCc
Q 004274 736 VKGQLKVTRAFGAGFLKKMGF 756 (764)
Q Consensus 736 VkG~LaVTRAFGDg~LKqPkv 756 (764)
.. ++|||||+..+-.|.+
T Consensus 170 ~~---~ltralG~~~~~~p~~ 187 (262)
T COG0631 170 RN---ALTRALGDFDLLEPDI 187 (262)
T ss_pred ch---hhhhhcCCCcccceeE
Confidence 43 8999999998755543
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.45 E-value=5.8e-13 Score=131.61 Aligned_cols=117 Identities=39% Similarity=0.513 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCceEEEEEEECCeEEEEEcCCccEEEEecCCCCCCCCCCCcccccc
Q 004274 575 AVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSR 654 (764)
Q Consensus 575 ~VlrAL~rAf~~TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l~ 654 (764)
.+.++|.+++.+++++++..... ......||||++++++..+.+|++||||||+|+.+.+
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------- 132 (255)
T smart00332 73 DVEEALRKAFLKTDEEILEELES----LEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------- 132 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh----ccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC----------------
Confidence 57778999999999999776432 2244579999999999999999999999999999864
Q ss_pred ccccchhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecC
Q 004274 655 HKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFND 734 (764)
Q Consensus 655 ~r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ng 734 (764)
...+||.||++..+.|..||...+ ..+..+
T Consensus 133 ----------------------------------------------~~~~lt~dh~~~~~~~~~~i~~~~----~~~~~~ 162 (255)
T smart00332 133 ----------------------------------------------KAVQLTEDHKPSNEDERARIEAAG----GFVING 162 (255)
T ss_pred ----------------------------------------------ceeEcCCCCCCcCHHHHHHHHHcC----CEEECC
Confidence 347999999999999999999998 566677
Q ss_pred cccCccccccccccCcccccCccccCcc
Q 004274 735 RVKGQLKVTRAFGAGFLKKMGFTSTSAM 762 (764)
Q Consensus 735 RVkG~LaVTRAFGDg~LKqPkvn~ap~v 762 (764)
++.+.+.+||++|+..+| |.+...|++
T Consensus 163 ~~~~~~~lt~~~g~~~~~-~~i~~~p~~ 189 (255)
T smart00332 163 RVNGVLALSRAIGDFFLK-PYVSAEPDV 189 (255)
T ss_pred eECCeEecccccCCHhhc-CCeEeeeEE
Confidence 899999999999998876 555444443
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.42 E-value=1.6e-12 Score=127.54 Aligned_cols=118 Identities=36% Similarity=0.515 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCceEEEEEEECCeEEEEEcCCccEEEEecCCCCCCCCCCCccccc
Q 004274 574 DAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDS 653 (764)
Q Consensus 574 ~~VlrAL~rAf~~TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l 653 (764)
..+..+|.++|+++++.+...... .+....+|||++++++.++.+|++||||||+|+.+.+
T Consensus 69 ~~~~~~l~~~~~~~~~~l~~~~~~----~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~--------------- 129 (254)
T cd00143 69 EDIEEALRKAFLRADEEILEEAQD----EPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG--------------- 129 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh----ccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------------
Confidence 357778999999999999776332 2445679999999999999999999999999998765
Q ss_pred cccccchhhhhhhhhhcccccCcccccchhhhccccccchhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceec
Q 004274 654 RHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFN 733 (764)
Q Consensus 654 ~~r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~n 733 (764)
...|||.||++..+.|+.||...+ +.+..
T Consensus 130 -----------------------------------------------~~~~lt~dh~~~~~~~~~~i~~~~----~~~~~ 158 (254)
T cd00143 130 -----------------------------------------------EAVQLTKDHKPVNEEERERIEKAG----GRVSN 158 (254)
T ss_pred -----------------------------------------------ceeEcCCCCCCcChHHHHHHHHcC----CcEEe
Confidence 468999999999999999999988 44446
Q ss_pred CcccCccccccccccCcccccCccccCcc
Q 004274 734 DRVKGQLKVTRAFGAGFLKKMGFTSTSAM 762 (764)
Q Consensus 734 gRVkG~LaVTRAFGDg~LKqPkvn~ap~v 762 (764)
.++++.+.+||+||+..+| +.....|++
T Consensus 159 ~~~~~~~~~t~~lG~~~~~-~~~~~~~~~ 186 (254)
T cd00143 159 GRVPGVLAVTRALGDFDLK-PGVSAEPDV 186 (254)
T ss_pred CEEcCceeeccccCCcccc-CCEEcCCeE
Confidence 7788899999999999877 333344443
No 11
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.24 E-value=3.2e-11 Score=128.98 Aligned_cols=194 Identities=22% Similarity=0.226 Sum_probs=102.8
Q ss_pred cCcCcccccccccccccccccccCCccccCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCccc-ccCCceEEEE
Q 004274 538 LFPWSYDWHREEPCIDERMVESSGPIRKCKSGIIDHD-AVLRAMAQALESTEEAYMEMVEKALDTNPEL-ALMGSCVLVM 615 (764)
Q Consensus 538 ~~~w~~~w~~~~~~~~~~~~~~~~~~r~~~~g~vdh~-~VlrAL~rAf~~TEeafLe~~dk~l~enpeL-almGSTALVa 615 (764)
+-+-.++-|+++.- - +-...+......+.|+ .|.-||..||+..++.+-.. ...+ ...||||+|+
T Consensus 187 ~~~~~~g~~~~~s~--~----s~~~~~~~~ek~Ir~E~LViGAlEsAFqemDeqiare-------r~~~~~~GGCtalvv 253 (493)
T KOG1323|consen 187 HENLNFGKHRSESS--Y----SMSEMSREDEKRIRHEHLVIGALESAFQEMDEQIARE-------RQVWRLPGGCTALVV 253 (493)
T ss_pred ccccccccccccCC--c----ccccccchhhccCchHHhhHHHHHHHHHHHHHHHHHH-------HHhhcCCCCceEEEe
Confidence 45566777776521 0 0111222222346666 47888999988888877443 1122 2358899999
Q ss_pred EEECCeEEEEEcCCccEEEEecCCCCCCCCCCCccccccccccchhhhhhhhhhcccccCcccccchhhhccccccchhh
Q 004274 616 LMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISI 695 (764)
Q Consensus 616 LIkg~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l~~r~~S~~~~~~~~Leri~eeSp~~~~~~e~~~~nk~~e~~~ 695 (764)
+..-.+|||||.|||||||.+.++-.. .+..+ -.. -.+|-||.+.--.| ++.+.++. +.+..
T Consensus 254 i~llGKlYvaNAGDsRAIlVrndeirp-lS~ef--------TPe---tERqRlQ~Laf~~P-eLlgneFt-----rLEfp 315 (493)
T KOG1323|consen 254 IVLLGKLYVANAGDSRAILVRNDEIRP-LSKEF--------TPE---TERQRLQELAFRNP-ELLGNEFT-----RLEFP 315 (493)
T ss_pred eeeccceEEccCCCceEEEEecCCeee-ccccc--------CcH---HHHHHHHHHhhcCh-Hhhccccc-----ceecc
Confidence 999999999999999999999874211 00000 001 11222222221111 12222221 11111
Q ss_pred hc---ccceeeecCCCCCCCcHHHHHHHHHcC---CCCCCceecCcccCccccccccccCccc--------ccCccccCc
Q 004274 696 CR---LKMRAVQLSTDHSTSVEEEIIRIKAEH---PDDSQAVFNDRVKGQLKVTRAFGAGFLK--------KMGFTSTSA 761 (764)
Q Consensus 696 ~~---~~l~AlQLT~DHSps~eeEr~RIkaeh---PDd~~~I~ngRVkG~LaVTRAFGDg~LK--------qPkvn~ap~ 761 (764)
.. ..|.-..|=+||...-= -+.+|+.+. |=..+--...||.+.|.|||.|||..|| +|=+..+|+
T Consensus 316 rRl~~~dLgqrvLyRD~~MtGW-ayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPe 394 (493)
T KOG1323|consen 316 RRLTIKDLGQRVLYRDWNMTGW-AYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPE 394 (493)
T ss_pred cccChhhhcceeeeeccccccc-eeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCCcccchhhhcCCe
Confidence 11 12333455677766420 122233321 1000111124899999999999999998 455667777
Q ss_pred cc
Q 004274 762 MR 763 (764)
Q Consensus 762 vr 763 (764)
||
T Consensus 395 V~ 396 (493)
T KOG1323|consen 395 VR 396 (493)
T ss_pred eE
Confidence 65
No 12
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.21 E-value=2.8e-11 Score=139.66 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccccCCceEEEEEEECCeEEEEEcCCccEEEEecC
Q 004274 577 LRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQER 638 (764)
Q Consensus 577 lrAL~rAf~~TEeafLe~~dk~l~enpeLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~ 638 (764)
.++|.+||..+++++.++..+. ...+...||||+++++|.++.+||+||||||||+.++.
T Consensus 455 ~~~L~~ai~~AN~~I~~~~~~~--~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~ 514 (645)
T PRK14559 455 EETIREAIYLANEAIYDLNQQN--ARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRK 514 (645)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc--ccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecC
Confidence 3568899999999998764322 12255679999999999999999999999999998654
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=97.24 E-value=0.0012 Score=64.79 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=27.4
Q ss_pred ccccCCceEEEEEEECCeEEEEEcCCccEEEEecC
Q 004274 604 ELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQER 638 (764)
Q Consensus 604 eLalmGSTALVaLIkg~dVYVANVGDSRAVLar~~ 638 (764)
....++||++++++.++.++++||||||+|+..+.
T Consensus 93 ~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~ 127 (212)
T PF13672_consen 93 ELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRN 127 (212)
T ss_dssp GGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEET
T ss_pred cccccCceEEEEEEECCEEEEEEECCCeEEEEECC
Confidence 44568999999999999999999999999776543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.84 E-value=0.00094 Score=80.36 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=68.2
Q ss_pred CCceEEEEEEEC--------CeEEEEEcCCccEEEEecCCCCCCCCCCCccccccccccchhhhhhhhhhcccccCcccc
Q 004274 608 MGSCVLVMLMKD--------QDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHN 679 (764)
Q Consensus 608 mGSTALVaLIkg--------~dVYVANVGDSRAVLar~~~~~~~pn~~~gk~~l~~r~~S~~~~~~~~Leri~eeSp~~~ 679 (764)
.|..++.+.|+. ..+++||||+|-||+++.+.
T Consensus 609 lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~---------------------------------------- 648 (1081)
T KOG0618|consen 609 LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGK---------------------------------------- 648 (1081)
T ss_pred ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCC----------------------------------------
Confidence 466677777763 45889999999999998762
Q ss_pred cchhhhccccccchhhhcccceeeecCC-CCCCCcHHHHHHHHHcCCCCCCcee-cCcccCccccccccccCcccccCcc
Q 004274 680 QNCQVNMMNKNRDISICRLKMRAVQLST-DHSTSVEEEIIRIKAEHPDDSQAVF-NDRVKGQLKVTRAFGAGFLKKMGFT 757 (764)
Q Consensus 680 ~~~e~~~~nk~~e~~~~~~~l~AlQLT~-DHSps~eeEr~RIkaehPDd~~~I~-ngRVkG~LaVTRAFGDg~LKqPkvn 757 (764)
.+++|+ -|...+++|.+||+..+ ++|. ++++.|....||++|-.++ .|.+-
T Consensus 649 ----------------------~~p~t~~~~~~v~~eE~~RI~~~~----g~i~ed~k~ngvt~~tR~iG~~~l-~P~v~ 701 (1081)
T KOG0618|consen 649 ----------------------PLPTTRSPMLEVDREEYKRIVDSK----GFITEDNKLNGVTSSTRAIGPFSL-FPHVL 701 (1081)
T ss_pred ----------------------cCcccccccccCCHHHHHHHHHhc----CeecCCCeeeceeeeeeecccccc-ccccc
Confidence 122222 22334789999999998 7777 7899999999999998655 57888
Q ss_pred ccCccc
Q 004274 758 STSAMR 763 (764)
Q Consensus 758 ~ap~vr 763 (764)
..|.|+
T Consensus 702 p~Phv~ 707 (1081)
T KOG0618|consen 702 PDPHVS 707 (1081)
T ss_pred CCCcee
Confidence 888775
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=95.08 E-value=0.052 Score=52.66 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=28.0
Q ss_pred cCCceEEEEEE--ECCeEEEEEcCCccEEEEec
Q 004274 607 LMGSCVLVMLM--KDQDVYVMNLGDSRAILAQE 637 (764)
Q Consensus 607 lmGSTALVaLI--kg~dVYVANVGDSRAVLar~ 637 (764)
.+|+|++++.+ ..+.++++|+||+|+++.+.
T Consensus 84 ~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~ 116 (193)
T smart00331 84 GMFATLFLALYDFAGGTLSYANAGHSPPYLLRA 116 (193)
T ss_pred CcEEEEEEEEEECCCCEEEEEeCCCCceEEEEC
Confidence 57999999998 68899999999999999984
No 16
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=91.89 E-value=0.34 Score=53.27 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.3
Q ss_pred cCCceEEEEEEE--CCeEEEEEcCCccEEEEecC
Q 004274 607 LMGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (764)
Q Consensus 607 lmGSTALVaLIk--g~dVYVANVGDSRAVLar~~ 638 (764)
+.+|||+++.|. +..||+||+|||=..+.|.+
T Consensus 166 vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G 199 (330)
T KOG1379|consen 166 VGSSTACILALDRENGKLHTANLGDSGFLVVREG 199 (330)
T ss_pred CCcceeeeeeeecCCCeEEEeeccCcceEEEECC
Confidence 467788888888 99999999999999998876
No 17
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=76.21 E-value=12 Score=36.21 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=26.5
Q ss_pred CCceEEEEEEE--CCeEEEEEcCCccEEEEecC
Q 004274 608 MGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (764)
Q Consensus 608 mGSTALVaLIk--g~dVYVANVGDSRAVLar~~ 638 (764)
+..|++++++. .+.++++|+|++++++.+..
T Consensus 60 ~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~ 92 (193)
T PF07228_consen 60 RYATACYAIIDPETGTLTYANAGHPPPLLLRPG 92 (193)
T ss_dssp TTEEEEEEEEETTTTEEEEEEESSSEEEEEETT
T ss_pred ccceEEEEEecccceEEEEeCCCCCCEEEEecc
Confidence 67788888766 77799999999999999884
No 18
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=68.25 E-value=10 Score=37.97 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=37.1
Q ss_pred ccCCceEEEEEecccceEEEEEecCCCCCChhHHHHHHHHHHHHHH
Q 004274 289 KAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKE 334 (764)
Q Consensus 289 kAGEDRvhvv~sEe~GWlFvGIYDGFnGpDApdfL~~~LY~ai~~e 334 (764)
+-.||++.+......++.+++|+||..|..|.+|+...+-..+.+.
T Consensus 18 ~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~ 63 (255)
T smart00332 18 KPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEE 63 (255)
T ss_pred CCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHh
Confidence 5678888776554478999999999999999999998887666554
No 19
>PF08682 DUF1780: Protein of unknown function (DUF1780); InterPro: IPR014796 This is a family of uncharacterised proteins. The structure of a hypothetical protein from Pseudomonas aeruginosa has shown it to adopt an alpha/beta fold. ; PDB: 1Y0K_A.
Probab=67.82 E-value=0.87 Score=46.39 Aligned_cols=18 Identities=67% Similarity=1.040 Sum_probs=12.3
Q ss_pred CCCCChhHHHHHHHHHHH
Q 004274 314 FSGPDAPDFLMSHLYRAI 331 (764)
Q Consensus 314 FnGpDApdfL~~~LY~ai 331 (764)
|-||||||||.+||=+.|
T Consensus 183 FAhpdAP~fLr~nlGrsi 200 (208)
T PF08682_consen 183 FAHPDAPDFLRSNLGRSI 200 (208)
T ss_dssp EE-TTS-HHHHTTTT--E
T ss_pred ecCCCchHHHHhccCcee
Confidence 679999999999987654
No 20
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=67.80 E-value=8.9 Score=38.06 Aligned_cols=47 Identities=28% Similarity=0.404 Sum_probs=36.3
Q ss_pred cCCceEEEEEecc-cceEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q 004274 290 AGEDRVHVVLSEE-QGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELE 336 (764)
Q Consensus 290 AGEDRvhvv~sEe-~GWlFvGIYDGFnGpDApdfL~~~LY~ai~~eL~ 336 (764)
-.||++-+..... .+|.+++|.||..|.....+....+-+++.+++.
T Consensus 14 ~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~ 61 (254)
T cd00143 14 TNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELE 61 (254)
T ss_pred CCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 4799977643221 3899999999999998888888888777777665
No 21
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=40.48 E-value=47 Score=35.23 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=34.6
Q ss_pred cCCceEEEEE--ecccceEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q 004274 290 AGEDRVHVVL--SEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELE 336 (764)
Q Consensus 290 AGEDRvhvv~--sEe~GWlFvGIYDGFnGpDApdfL~~~LY~ai~~eL~ 336 (764)
..||..-+.. .+++ ++|.+|+||..|..|-++.-+.+-..+-++++
T Consensus 22 ~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~ 69 (262)
T COG0631 22 HNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFD 69 (262)
T ss_pred CCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHH
Confidence 4455554443 2234 89999999999999999999887777777655
No 22
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=40.34 E-value=14 Score=43.90 Aligned_cols=22 Identities=45% Similarity=0.946 Sum_probs=15.1
Q ss_pred CCceEEEEEecccceEEEEEecC
Q 004274 291 GEDRVHVVLSEEQGWLFIGIYDG 313 (764)
Q Consensus 291 GEDRvhvv~sEe~GWlFvGIYDG 313 (764)
|-..||.++||+|.|++.|= ||
T Consensus 169 g~~dvhLalSeDHawv~fg~-d~ 190 (618)
T PF05053_consen 169 GYKDVHLALSEDHAWVVFGK-DG 190 (618)
T ss_dssp T-TT-EEEE-SS-EEEEESC-CC
T ss_pred CcchheeeecCCceEEEecC-CC
Confidence 45589999999999999875 54
No 23
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=28.78 E-value=51 Score=26.65 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=17.5
Q ss_pred eEEEEEecccceEEEEEecCCCC
Q 004274 294 RVHVVLSEEQGWLFIGIYDGFSG 316 (764)
Q Consensus 294 Rvhvv~sEe~GWlFvGIYDGFnG 316 (764)
+|.|+ .++-+|..|- +||+.|
T Consensus 26 ~v~v~-~~~~~W~~V~-~~g~~G 46 (55)
T PF06347_consen 26 PVRVI-ECRGGWCKVR-ADGRTG 46 (55)
T ss_pred EEEEE-EccCCeEEEE-ECCeEE
Confidence 66666 6677999999 999987
No 24
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.84 E-value=73 Score=30.94 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=26.5
Q ss_pred Ccccc---ccccCCceEEEEEecccceEEEEEec
Q 004274 282 NLQWA---HGKAGEDRVHVVLSEEQGWLFIGIYD 312 (764)
Q Consensus 282 nlQWA---~GkAGEDRvhvv~sEe~GWlFvGIYD 312 (764)
.+-|| +||-|--||-|..-.+..|+|+-||+
T Consensus 45 K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~ 78 (120)
T PF06296_consen 45 KKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYA 78 (120)
T ss_pred EEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEc
Confidence 34455 68999999999999999999998876
No 25
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=25.63 E-value=1.5e+02 Score=36.63 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=27.3
Q ss_pred cCCceEEEEEEE--CCeEEEEEcCCccEEEEecC
Q 004274 607 LMGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (764)
Q Consensus 607 lmGSTALVaLIk--g~dVYVANVGDSRAVLar~~ 638 (764)
.+.+|+.++++. ...+.++|+|++++++.+.+
T Consensus 634 ~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~ 667 (764)
T TIGR02865 634 EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA 667 (764)
T ss_pred CeEEEEEEEEEECCCCeEEEEecCCCceEEEECC
Confidence 478999998885 78899999999999987653
Done!