BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004275
(764 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 144/303 (47%), Gaps = 32/303 (10%)
Query: 90 ILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSI 149
+ L+ G IP N + L + LS NY +G++P S L L L + N L G I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 150 PLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTE 209
P E+ + TLE L+L+ N L G +P L N +L I LS+N TG IP+ G L+NL
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 210 FRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQL-----------KNLTEL 258
++ ++ +G IP +G+ L LDL G IP+ + + K +
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 259 RISDLKGSSSSFPNLQDMK-----KMERLILRN-CLITGRI------PEYIEDMTDLKIL 306
+ +K NL + + ++ RL RN C IT R+ P + ++ + L
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFL 634
Query: 307 DLSFNQLTGPVPGILQNLKKIDYIFLTN---NSLSGTLPDWI--LTSEKNLDLSYNNFTE 361
D+S+N L+G +P + + + Y+F+ N N +SG++PD + L LDLS N
Sbjct: 635 DMSYNMLSGYIP---KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 362 SSP 364
P
Sbjct: 692 RIP 694
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 139/282 (49%), Gaps = 31/282 (10%)
Query: 97 LAGVIPEEF-GNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE-IG 154
G IP+ G L +DLS N+F G++P F L L + N SG +P++ +
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 155 DISTLEELVLEDNQLVGPLPENLGNLK-SLRRILLSSNNFTGSI-PESYGNLKN-LTEFR 211
+ L+ L L N+ G LPE+L NL SL + LSSNNF+G I P N KN L E
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 212 IDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFP 271
+ + TG+IP + N ++L L L L G IPS++ L L +L+
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK------------ 445
Query: 272 NLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIF 331
L ++ G IP+ + + L+ L L FN LTG +P L N +++I
Sbjct: 446 ------------LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 332 LTNNSLSGTLPDWI--LTSEKNLDLSYNNFTESSPATCRESR 371
L+NN L+G +P WI L + L LS N+F+ + PA + R
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 535
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 3/204 (1%)
Query: 97 LAGVIPEEFGNLTF-LQEVDLSRNYFNGS-LPKSFARLQN-LTKLLILGNRLSGSIPLEI 153
+G +PE NL+ L +DLS N F+G LP +N L +L + N +G IP +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 154 GDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRID 213
+ S L L L N L G +P +LG+L LR + L N G IP+ +K L +D
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 214 GSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNL 273
++LTG IP+ + N T L+ + L L G IP I +L+NL L++S+ S + L
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 274 QDMKKMERLILRNCLITGRIPEYI 297
D + + L L L G IP +
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 121/283 (42%), Gaps = 54/283 (19%)
Query: 87 VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLS 146
+ ++L +L G IP N T L + LS N G +PK RL+NL L + N S
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 147 GSIPLEIGDISTLEELVLEDNQLVGPLPENL--------GNLKSLRRILLSSNNFTGSIP 198
G+IP E+GD +L L L N G +P + N + +R + N+ G
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND--GMKK 582
Query: 199 ESYGNLKNLTEFR------------IDGSNLTGRI------PNFIGNWTKLDRLDLQGTS 240
E +G NL EF+ + N+T R+ P F N + + LD+
Sbjct: 583 ECHG-AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM-FLDMSYNM 640
Query: 241 LEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDM 300
L G IP I + L L + I+G IP+ + D+
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHND------------------------ISGSIPDEVGDL 676
Query: 301 TDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPD 343
L ILDLS N+L G +P + L + I L+NN+LSG +P+
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 24/222 (10%)
Query: 157 STLEELVLEDNQLVGPLPE--NLGNLKSLRRILLSSN--NFTGSIPESYGNLK------- 205
++L L L N L GP+ +LG+ L+ + +SSN +F G + G LK
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV---SGGLKLNSLEVL 153
Query: 206 NLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKG 265
+L+ I G+N+ G + +L L + G + G + +S+ NL L +S
Sbjct: 154 DLSANSISGANVVGWV--LSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSS-NN 208
Query: 266 SSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLK 325
S+ P L D ++ L + ++G I T+LK+L++S NQ GP+P + LK
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 266
Query: 326 KIDYIFLTNNSLSGTLPDWI---LTSEKNLDLSYNNFTESSP 364
+ Y+ L N +G +PD++ + LDLS N+F + P
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 85 CHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
CH LL+ G+ E+ L+ +++ + G +F ++ L + N
Sbjct: 584 CHGAGNLLE---FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 145 LSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNL 204
LSG IP EIG + L L L N + G +P+ +G+L+ L + LSSN G IP++ L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 205 KNLTEFRIDGSNLTGRIP 222
LTE + +NL+G IP
Sbjct: 701 TMLTEIDLSNNNLSGPIP 718
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 119/271 (43%), Gaps = 25/271 (9%)
Query: 111 LQEVDLSRNYFNGSLPK--SFARLQNLTKLLILGNRLSGSIPLEIG-DISTLEELVLEDN 167
L +DLSRN +G + S L L + N L + G +++LE L L N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 168 QLVGP------LPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNLTGRI 221
+ G L + G LK L +S N +G + S NL + +N + I
Sbjct: 159 SISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGI 213
Query: 222 PNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISD--LKGSSSSFPNLQDMKKM 279
P F+G+ + L LD+ G L G IS L L IS G P +K +
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP----LKSL 268
Query: 280 ERLILRNCLITGRIPEYIEDMTD-LKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLS 338
+ L L TG IP+++ D L LDLS N G VP + ++ + L++N+ S
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 339 GTLP-DWILTSE--KNLDLSYNNFTESSPAT 366
G LP D +L K LDLS+N F+ P +
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 17/144 (11%)
Query: 33 EVQTLQS-IFRKLNFRNGQVNQTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVIL 91
E Q ++S +L+ RN N TS G D+NGS D +Y+
Sbjct: 592 EFQGIRSEQLNRLSTRN-PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM---------- 640
Query: 92 LKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPL 151
L+G IP+E G++ +L ++L N +GS+P L+ L L + N+L G IP
Sbjct: 641 -----LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 152 EIGDISTLEELVLEDNQLVGPLPE 175
+ ++ L E+ L +N L GP+PE
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPE 719
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 28/253 (11%)
Query: 34 VQTLQSIFRKLNFRNGQVNQ--TSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVIL 91
V+TL+++ N G++ ++CT +W I SN + T + + ++ ++
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNW---ISLSN-NRLTGEIPKWIGRLENLAILK 517
Query: 92 LKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNR------ 144
L + +G IP E G+ L +DL+ N FNG++P + F + + I G R
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 145 ---------------LSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLS 189
G ++ +ST + G N S+ + +S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 190 SNNFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTI 249
N +G IP+ G++ L + ++++G IP+ +G+ L+ LDL L+G IP +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 250 SQLKNLTELRISD 262
S L LTE+ +S+
Sbjct: 698 SALTMLTEIDLSN 710
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 140/289 (48%), Gaps = 32/289 (11%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDI 156
G IP N + L + LS NY +G++P S L L L + N L G IP E+ +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 157 STLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSN 216
TLE L+L+ N L G +P L N +L I LS+N TG IP+ G L+NL ++ ++
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 217 LTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQL-----------KNLTELRISDLKG 265
+G IP +G+ L LDL G IP+ + + K ++ +K
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 266 SSSSFPNLQDMK-----KMERLILRN-CLITGRI------PEYIEDMTDLKILDLSFNQL 313
NL + + ++ RL RN C IT R+ P + ++ + LD+S+N L
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNML 644
Query: 314 TGPVPGILQNLKKIDYIFLTN---NSLSGTLPDWI--LTSEKNLDLSYN 357
+G +P + + + Y+F+ N N +SG++PD + L LDLS N
Sbjct: 645 SGYIP---KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 139/282 (49%), Gaps = 31/282 (10%)
Query: 97 LAGVIPEEF-GNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE-IG 154
G IP+ G L +DLS N+F G++P F L L + N SG +P++ +
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 155 DISTLEELVLEDNQLVGPLPENLGNLK-SLRRILLSSNNFTGSI-PESYGNLKN-LTEFR 211
+ L+ L L N+ G LPE+L NL SL + LSSNNF+G I P N KN L E
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 212 IDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFP 271
+ + TG+IP + N ++L L L L G IPS++ L L +L+
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK------------ 448
Query: 272 NLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIF 331
L ++ G IP+ + + L+ L L FN LTG +P L N +++I
Sbjct: 449 ------------LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 332 LTNNSLSGTLPDWI--LTSEKNLDLSYNNFTESSPATCRESR 371
L+NN L+G +P WI L + L LS N+F+ + PA + R
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 3/204 (1%)
Query: 97 LAGVIPEEFGNLTF-LQEVDLSRNYFNGS-LPKSFARLQN-LTKLLILGNRLSGSIPLEI 153
+G +PE NL+ L +DLS N F+G LP +N L +L + N +G IP +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 154 GDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRID 213
+ S L L L N L G +P +LG+L LR + L N G IP+ +K L +D
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 214 GSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNL 273
++LTG IP+ + N T L+ + L L G IP I +L+NL L++S+ S + L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 274 QDMKKMERLILRNCLITGRIPEYI 297
D + + L L L G IP +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 121/283 (42%), Gaps = 54/283 (19%)
Query: 87 VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLS 146
+ ++L +L G IP N T L + LS N G +PK RL+NL L + N S
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 147 GSIPLEIGDISTLEELVLEDNQLVGPLPENL--------GNLKSLRRILLSSNNFTGSIP 198
G+IP E+GD +L L L N G +P + N + +R + N+ G
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND--GMKK 585
Query: 199 ESYGNLKNLTEFR------------IDGSNLTGRI------PNFIGNWTKLDRLDLQGTS 240
E +G NL EF+ + N+T R+ P F N + + LD+
Sbjct: 586 ECHG-AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM-FLDMSYNM 643
Query: 241 LEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDM 300
L G IP I + L L + I+G IP+ + D+
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHND------------------------ISGSIPDEVGDL 679
Query: 301 TDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPD 343
L ILDLS N+L G +P + L + I L+NN+LSG +P+
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 24/222 (10%)
Query: 157 STLEELVLEDNQLVGPLPE--NLGNLKSLRRILLSSN--NFTGSIPESYGNLK------- 205
++L L L N L GP+ +LG+ L+ + +SSN +F G + G LK
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV---SGGLKLNSLEVL 156
Query: 206 NLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKG 265
+L+ I G+N+ G + +L L + G + G + +S+ NL L +S
Sbjct: 157 DLSANSISGANVVGWV--LSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSS-NN 211
Query: 266 SSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLK 325
S+ P L D ++ L + ++G I T+LK+L++S NQ GP+P + LK
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269
Query: 326 KIDYIFLTNNSLSGTLPDWI---LTSEKNLDLSYNNFTESSP 364
+ Y+ L N +G +PD++ + LDLS N+F + P
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 85 CHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
CH LL+ G+ E+ L+ +++ + G +F ++ L + N
Sbjct: 587 CHGAGNLLE---FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 145 LSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNL 204
LSG IP EIG + L L L N + G +P+ +G+L+ L + LSSN G IP++ L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 205 KNLTEFRIDGSNLTGRIP 222
LTE + +NL+G IP
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 122/280 (43%), Gaps = 25/280 (8%)
Query: 111 LQEVDLSRNYFNGSLPK--SFARLQNLTKLLILGNRLSGSIPLEIG-DISTLEELVLEDN 167
L +DLSRN +G + S L L + N L + G +++LE L L N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 168 QLVGP------LPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNLTGRI 221
+ G L + G LK L +S N +G + S NL + +N + I
Sbjct: 162 SISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGI 216
Query: 222 PNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISD--LKGSSSSFPNLQDMKKM 279
P F+G+ + L LD+ G L G IS L L IS G P +K +
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP----LKSL 271
Query: 280 ERLILRNCLITGRIPEYIEDMTD-LKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLS 338
+ L L TG IP+++ D L LDLS N G VP + ++ + L++N+ S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 339 GTLP-DWILTSE--KNLDLSYNNFTESSPATCRESRVNIL 375
G LP D +L K LDLS+N F+ P + ++L
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 17/144 (11%)
Query: 33 EVQTLQS-IFRKLNFRNGQVNQTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVIL 91
E Q ++S +L+ RN N TS G D+NGS D +Y+
Sbjct: 595 EFQGIRSEQLNRLSTRN-PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM---------- 643
Query: 92 LKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPL 151
L+G IP+E G++ +L ++L N +GS+P L+ L L + N+L G IP
Sbjct: 644 -----LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 152 EIGDISTLEELVLEDNQLVGPLPE 175
+ ++ L E+ L +N L GP+PE
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPE 722
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 28/253 (11%)
Query: 34 VQTLQSIFRKLNFRNGQVNQ--TSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVIL 91
V+TL+++ N G++ ++CT +W I SN + T + + ++ ++
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNW---ISLSN-NRLTGEIPKWIGRLENLAILK 520
Query: 92 LKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNR------ 144
L + +G IP E G+ L +DL+ N FNG++P + F + + I G R
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 145 ---------------LSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLS 189
G ++ +ST + G N S+ + +S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 190 SNNFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTI 249
N +G IP+ G++ L + ++++G IP+ +G+ L+ LDL L+G IP +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 250 SQLKNLTELRISD 262
S L LTE+ +S+
Sbjct: 701 SALTMLTEIDLSN 713
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNR-EFV 703
Q F+LR+++ A++NF N +G GGFG VYKG L+DG ++AVK+L + QG +F
Sbjct: 24 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQ 83
Query: 704 NEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
E+ MIS H+NL++L G C+ + LLVY Y+ N S+A L
Sbjct: 84 TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 126
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNR-EFV 703
Q F+LR+++ A++NF N +G GGFG VYKG L+DG ++AVK+L + QG +F
Sbjct: 16 QLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQ 75
Query: 704 NEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
E+ MIS H+NL++L G C+ + LLVY Y+ N S+A L
Sbjct: 76 TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 118
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%)
Query: 651 LRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMIS 710
L ++ ATNNFD IG G FG VYKG L DGA +A+K+ + +S QG EF EI +S
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 711 ALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLHL 762
+H +LV L G C E N+++L+Y+Y+EN +L R L+G+ + ++ ++ L
Sbjct: 91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%)
Query: 651 LRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMIS 710
L ++ ATNNFD IG G FG VYKG L DGA +A+K+ + +S QG EF EI +S
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 711 ALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLHL 762
+H +LV L G C E N+++L+Y+Y+EN +L R L+G+ + ++ ++ L
Sbjct: 91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 125/283 (44%), Gaps = 8/283 (2%)
Query: 57 TEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVILLKGFNLAGV--IPEEFGNLTFLQEV 114
T SW T D N + C T V + L G NL IP NL +L +
Sbjct: 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTY-RVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81
Query: 115 DLSR-NYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPL 173
+ N G +P + A+L L L I +SG+IP + I TL L N L G L
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 174 PENLGNLKSLRRILLSSNNFTGSIPESYGNLKNL-TEFRIDGSNLTGRIPNFIGNWTKLD 232
P ++ +L +L I N +G+IP+SYG+ L T I + LTG+IP N L
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200
Query: 233 RLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGR 292
+DL LEG KN ++ ++ + + K + L LRN I G
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+P+ + + L L++SFN L G +P NL++ D NN
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 230 KLDRLDLQGTSLEGP--IPSTISQLKNLTELRISDLKGSSSSFPN-LQDMKKMERLILRN 286
+++ LDL G +L P IPS+++ L L L I + P + + ++ L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 287 CLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWIL 346
++G IP+++ + L LD S+N L+G +P + +L + I N +SG +PD
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 347 TSEK---NLDLSYNNFTESSPAT 366
+ K ++ +S N T P T
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPT 193
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 11/118 (9%)
Query: 635 EDKELRGLDLQTGYFTLRQIKAATNNFD------AANKIGEGGFGPVYKGTLSDGAVIAV 688
E+K L D + F+ ++K TNNFD NK+GEGGFG VYKG +++ +AV
Sbjct: 1 ENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAV 59
Query: 689 KQLSS----KSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
K+L++ +++ ++F EI +++ QH+NLV+L G +G+ L LVY Y+ N SL
Sbjct: 60 KKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 117
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 11/118 (9%)
Query: 635 EDKELRGLDLQTGYFTLRQIKAATNNFD------AANKIGEGGFGPVYKGTLSDGAVIAV 688
E+K L D + F+ ++K TNNFD NK+GEGGFG VYKG +++ V AV
Sbjct: 1 ENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTV-AV 59
Query: 689 KQLSS----KSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
K+L++ +++ ++F EI +++ QH+NLV+L G +G+ L LVY Y+ N SL
Sbjct: 60 KKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 117
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 11/110 (10%)
Query: 643 DLQTGYFTLRQIKAATNNFD------AANKIGEGGFGPVYKGTLSDGAVIAVKQLSS--- 693
D + F+ ++K TNNFD NK+GEGGFG VYKG +++ +AVK+L++
Sbjct: 3 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAAMVD 61
Query: 694 -KSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+++ ++F EI +++ QH+NLV+L G +G+ L LVY Y+ N SL
Sbjct: 62 ITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 111
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 649 FTLRQIKAATNNFD------AANKIGEGGFGPVYKGTLSDGAVIAVKQLSS----KSKQG 698
F+ ++K TNNFD NK GEGGFG VYKG +++ +AVK+L++ +++
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEEL 64
Query: 699 NREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
++F EI + + QH+NLV+L G +G+ L LVY Y N SL
Sbjct: 65 KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSL 108
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL------SDGAVIAVKQLSSKSKQGNREFVNEIGMISAL 712
+N ++GEG FG V+ D ++AVK L S ++F E +++ L
Sbjct: 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL 72
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALF-----------GNAITKITYTFSLH 761
QH+++VK YG C+EG+ L++V+EY+++ L + L GN T++T + LH
Sbjct: 73 QHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLH 132
Query: 762 L 762
+
Sbjct: 133 I 133
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 666 KIGEGGFGPVYKGTL------SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++GEG FG V+ D ++AVK L S+ ++F E +++ LQHQ++V+
Sbjct: 25 ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 84
Query: 720 LYGCCIEGNQLLLVYEYLENNSLARAL 746
+G C EG LL+V+EY+ + L R L
Sbjct: 85 FFGVCTEGRPLLMVFEYMRHGDLNRFL 111
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 666 KIGEGGFGPVYKGTL------SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++GEG FG V+ D ++AVK L S+ ++F E +++ LQHQ++V+
Sbjct: 19 ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 78
Query: 720 LYGCCIEGNQLLLVYEYLENNSLARAL 746
+G C EG LL+V+EY+ + L R L
Sbjct: 79 FFGVCTEGRPLLMVFEYMRHGDLNRFL 105
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 666 KIGEGGFGPVYKGTL------SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++GEG FG V+ D ++AVK L S+ ++F E +++ LQHQ++V+
Sbjct: 48 ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 107
Query: 720 LYGCCIEGNQLLLVYEYLENNSLARAL 746
+G C EG LL+V+EY+ + L R L
Sbjct: 108 FFGVCTEGRPLLMVFEYMRHGDLNRFL 134
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 665 NKIGEGGFGPVYKGTL------SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLV 718
++GEG FG V+ D ++AVK L + ++F E +++ LQH+++V
Sbjct: 21 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIV 80
Query: 719 KLYGCCIEGNQLLLVYEYLENNSLARAL 746
K YG C +G+ L++V+EY+++ L + L
Sbjct: 81 KFYGVCGDGDPLIMVFEYMKHGDLNKFL 108
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 656 AATNNFDAANKIGEGGFGPVYKG-TLSDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQ 713
++++ F K+G G + VYKG + G +A+K++ S++G + EI ++ L+
Sbjct: 2 SSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELK 61
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENN 740
H+N+V+LY N+L LV+E+++N+
Sbjct: 62 HENIVRLYDVIHTENKLTLVFEFMDND 88
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 667 IGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIE 726
+G G FG V K V A+KQ+ S+S++ + F+ E+ +S + H N+VKLYG C+
Sbjct: 16 VGRGAFGVVCKAKWRAKDV-AIKQIESESER--KAFIVELRQLSRVNHPNIVKLYGACL- 71
Query: 727 GNQLLLVYEYLENNSLARALFG 748
N + LV EY E SL L G
Sbjct: 72 -NPVCLVMEYAEGGSLYNVLHG 92
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 667 IGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIE 726
+G G FG V K V A+KQ+ S+S++ + F+ E+ +S + H N+VKLYG C+
Sbjct: 17 VGRGAFGVVCKAKWRAKDV-AIKQIESESER--KAFIVELRQLSRVNHPNIVKLYGACL- 72
Query: 727 GNQLLLVYEYLENNSLARALFG 748
N + LV EY E SL L G
Sbjct: 73 -NPVCLVMEYAEGGSLYNVLHG 93
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGN-------REFVNEIGM 708
A N + +IG+GGFG V+KG L D +V+A+K L +G +EF E+ +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 709 ISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLHL 762
+S L H N+VKLYG + N +V E++ L L A I ++ L L
Sbjct: 77 MSNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRL 127
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGN-------REFVNEIGM 708
A N + +IG+GGFG V+KG L D +V+A+K L +G +EF E+ +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 709 ISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLHL 762
+S L H N+VKLYG + N +V E++ L L A I ++ L L
Sbjct: 77 MSNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRL 127
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGN-------REFVNEIGM 708
A N + +IG+GGFG V+KG L D +V+A+K L +G +EF E+ +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 709 ISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLHL 762
+S L H N+VKLYG + N +V E++ L L A I ++ L L
Sbjct: 77 MSNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRL 127
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIGEG G V T+ S G ++AVK++ + +Q NE+ ++ QH+N+V++Y
Sbjct: 27 KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 86
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V E+LE +L
Sbjct: 87 LVGDELWVVMEFLEGGAL 104
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIGEG G V T+ S G ++AVK++ + +Q NE+ ++ QH+N+V++Y
Sbjct: 36 KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 95
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V E+LE +L
Sbjct: 96 LVGDELWVVMEFLEGGAL 113
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIGEG G V T+ S G ++AVK++ + +Q NE+ ++ QH+N+V++Y
Sbjct: 38 KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 97
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V E+LE +L
Sbjct: 98 LVGDELWVVMEFLEGGAL 115
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIGEG G V T+ S G ++AVK++ + +Q NE+ ++ QH+N+V++Y
Sbjct: 31 KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 90
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V E+LE +L
Sbjct: 91 LVGDELWVVMEFLEGGAL 108
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIGEG G V T+ S G ++AVK++ + +Q NE+ ++ QH+N+V++Y
Sbjct: 158 KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 217
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V E+LE +L
Sbjct: 218 LVGDELWVVMEFLEGGAL 235
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGTL-SDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIGEG G V T+ S G ++AVK++ + +Q NE+ ++ QH+N+V++Y
Sbjct: 81 KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 140
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V E+LE +L
Sbjct: 141 LVGDELWVVMEFLEGGAL 158
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 67 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 116
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 115
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 63 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 114
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 63 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 114
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 113
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 65 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 116
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 63 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 114
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 70 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 119
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 113
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 113
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 115
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 111
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 111
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 111
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 70 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 119
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 111
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 64 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 113
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+++ + L + + +A+T I +Y F L
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEHVDQD-LKKFMDASALTGIPLPLIKSYLFQL 115
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLSMD-LKKFMDASALTGIPLPLIKSYLFQL 115
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 HPNIVKLLDVIHTENKLYLVFEFLSMD-LKKFMDASALTGIPLPLIKSYLFQL 113
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + +A+T I +Y F L
Sbjct: 61 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKDFMDASALTGIPLPLIKSYLFQL 112
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 19 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 78
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARALFGNA 750
G C + L L+ EYL SL L +A
Sbjct: 79 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHA 111
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
H N+VKL N+L LV+E+L + L + +A+T I +Y F L
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFLHQD-LKTFMDASALTGIPLPLIKSYLFQL 115
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+IG G FG V+ G + +A+K + S + +F+ E ++ L H LV+LYG
Sbjct: 32 VQEIGSGQFGLVHLGYWLNKDKVAIKTIKEGSMSED-DFIEEAEVMMKLSHPKLVQLYGV 90
Query: 724 CIEGNQLLLVYEYLENNSLARAL 746
C+E + LV+E++E+ L+ L
Sbjct: 91 CLEQAPICLVFEFMEHGCLSDYL 113
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 660 NFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNR--EFVNEIGMISALQHQNL 717
+ + KIG G FG V++ G+ +AVK L + R EF+ E+ ++ L+H N+
Sbjct: 38 DLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI 96
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSLARAL 746
V G + L +V EYL SL R L
Sbjct: 97 VLFMGAVTQPPNLSIVTEYLSRGSLYRLL 125
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 660 NFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNR--EFVNEIGMISALQHQNL 717
+ + KIG G FG V++ G+ +AVK L + R EF+ E+ ++ L+H N+
Sbjct: 38 DLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI 96
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSLARAL 746
V G + L +V EYL SL R L
Sbjct: 97 VLFMGAVTQPPNLSIVTEYLSRGSLYRLL 125
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 667 IGEGGFGPVYKGTLSDGA-----VIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNLVKL 720
IG G FG VYKG L + +A+K L + + R +F+ E G++ H N+++L
Sbjct: 52 IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111
Query: 721 YGCCIEGNQLLLVYEYLENNSLARAL 746
G + ++++ EY+EN +L + L
Sbjct: 112 EGVISKYKPMMIITEYMENGALDKFL 137
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+IG G FG V+ G + +A+K + + +F+ E ++ L H LV+LYG
Sbjct: 10 VQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 68
Query: 724 CIEGNQLLLVYEYLENNSLARAL 746
C+E + LV+E++E+ L+ L
Sbjct: 69 CLEQAPICLVFEFMEHGCLSDYL 91
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 2/241 (0%)
Query: 103 EEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEI-GDISTLEE 161
+EF + L+E++L+ N + P +F L NL L + NRL IPL + +S L +
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTK 108
Query: 162 LVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNLTGRI 221
L + +N++V L +L +L+ + + N+ ++ L +L + ++ NLT
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168
Query: 222 PNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKMER 281
+ + L L L+ ++ + +L L L IS + PN +
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228
Query: 282 LILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTL 341
L + +C +T + + L+ L+LS+N ++ +L L ++ I L L+
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288
Query: 342 P 342
P
Sbjct: 289 P 289
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 120/298 (40%), Gaps = 35/298 (11%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDI 156
++ V P F NL L+ + L N F L NLTKL I N++ + D+
Sbjct: 68 VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127
Query: 157 STLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSN 216
L+ L + DN LV L SL ++ L N T E+ +L L R+ N
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187
Query: 217 LTG-RIPNF----------IGNWTKLDR--------LDLQGTSLEGPIPSTISQL--KNL 255
+ R +F I +W LD L+L S+ + + L ++L
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247
Query: 256 TELR--------ISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILD 307
LR IS ++GS L ++ +++ + L + P + L++L+
Sbjct: 248 VYLRFLNLSYNPISTIEGSM-----LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302
Query: 308 LSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLP-DWILTSEKNLDLSYNNFTESSP 364
+S NQLT + ++ ++ + L +N L+ W+ L+ + T ++P
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+IG G FG V+ G + +A+K + + +F+ E ++ L H LV+LYG
Sbjct: 12 VQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 70
Query: 724 CIEGNQLLLVYEYLENNSLARAL 746
C+E + LV+E++E+ L+ L
Sbjct: 71 CLEQAPICLVFEFMEHGCLSDYL 93
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+IG G FG V+ G + +A+K + + +F+ E ++ L H LV+LYG
Sbjct: 15 VQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 73
Query: 724 CIEGNQLLLVYEYLENNSLARAL 746
C+E + LV+E++E+ L+ L
Sbjct: 74 CLEQAPICLVFEFMEHGCLSDYL 96
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+IG G FG V+ G + +A+K + + +F+ E ++ L H LV+LYG
Sbjct: 12 VQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 70
Query: 724 CIEGNQLLLVYEYLENNSLARAL 746
C+E + LV+E++E+ L+ L
Sbjct: 71 CLEQAPICLVFEFMEHGCLSDYL 93
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+ + L ++++ + EI ++ L H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 112
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+ + L ++++ + EI ++ L H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E+L + L + + +A+T I +Y F L
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQL 111
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 640 RGLDLQTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSS---KS 695
+ L GY TL NF KIG G F VY+ L DG +A+K++
Sbjct: 20 KALRPDMGYNTL-------ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMD 72
Query: 696 KQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+ + + EI ++ L H N++K Y IE N+L +V E + L+R +
Sbjct: 73 AKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMI 123
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYL 737
H N+VKL N+L LV+E+L
Sbjct: 63 HPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQ 713
+ NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYL 737
H N+VKL N+L LV+E+L
Sbjct: 64 HPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 20 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 79
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSL 742
G C + L L+ EYL SL
Sbjct: 80 YKGVCYSAGRRNLKLIMEYLPYGSL 104
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 106
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSL 742
G C + L L+ EYL SL
Sbjct: 107 YKGVCYSAGRRNLKLIMEYLPYGSL 131
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 15 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 74
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 75 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 103
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
NF KIGEG +G VYK G V+A+K+ L ++++ + EI ++ L H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKI------TYTFSL 760
N+VKL N+L LV+E++ + L + +A+T I +Y F L
Sbjct: 62 NIVKLLDVIHTENKLYLVFEHVHQD-LKTFMDASALTGIPLPLIKSYLFQL 111
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 22 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 81
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSL 742
G C + L L+ EYL SL
Sbjct: 82 YKGVCYSAGRRNLKLIMEYLPYGSL 106
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 19 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 78
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 79 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 107
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 14 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 73
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 74 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 102
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 104
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 21 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 80
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSL 742
G C + L L+ EYL SL
Sbjct: 81 YKGVCYSAGRRNLKLIMEYLPYGSL 105
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 104
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 17 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 76
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 77 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 105
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 660 NFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLS-SKSKQG-NREFVNEIGMISALQHQNL 717
+ KIGEG +G VYK + G A+K++ K +G + EI ++ L+H N+
Sbjct: 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 718 VKLYGCCIEGNQLLLVYEYLENN 740
VKLY +L+LV+E+L+ +
Sbjct: 63 VKLYDVIHTKKRLVLVFEHLDQD 85
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 660 NFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLS-SKSKQG-NREFVNEIGMISALQHQNL 717
+ KIGEG +G VYK + G A+K++ K +G + EI ++ L+H N+
Sbjct: 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 718 VKLYGCCIEGNQLLLVYEYLENN 740
VKLY +L+LV+E+L+ +
Sbjct: 63 VKLYDVIHTKKRLVLVFEHLDQD 85
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 23 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 82
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 83 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 111
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 660 NFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLS-SKSKQG-NREFVNEIGMISALQHQNL 717
+ KIGEG +G VYK + G A+K++ K +G + EI ++ L+H N+
Sbjct: 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 718 VKLYGCCIEGNQLLLVYEYLENN 740
VKLY +L+LV+E+L+ +
Sbjct: 63 VKLYDVIHTKKRLVLVFEHLDQD 85
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 104
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 34 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 93
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ EYL SL L
Sbjct: 94 YKGVCYSAGRRNLKLIMEYLPYGSLRDYL 122
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 34 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 93
Query: 720 LYGCCIEGNQ--LLLVYEYLENNSL 742
G C + L L+ EYL SL
Sbjct: 94 YKGVCYSAGRRNLKLIMEYLPYGSL 118
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 109/277 (39%), Gaps = 37/277 (13%)
Query: 38 QSIFRKLNFRNGQVNQTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVILLKGFNL 97
S +R+ N N Q+ + T + T D D T + + L F
Sbjct: 47 HSAWRQANSNNPQIE--TRTGRALKATAD------LLEDATQPGRVALELRSVPLPQF-- 96
Query: 98 AGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDIS 157
P++ L+ LQ + LP + + L L + N L ++P I ++
Sbjct: 97 ----PDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLR-ALPASIASLN 150
Query: 158 TLEELVLEDNQLVGPLPENLG------------NLKSLRRILLSSNNFTG--SIPESYGN 203
L EL + + LPE L NL+SLR +TG S+P S N
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL------EWTGIRSLPASIAN 204
Query: 204 LKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDL 263
L+NL +I S L+ P I + KL+ LDL+G + P L L + D
Sbjct: 205 LQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
Query: 264 KGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDM 300
+ ++ + ++E+L LR C+ R+P I +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 27 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 85
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 86 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 116
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 20 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 78
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 79 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 109
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQ 713
K FD K+GEG +G VYK + G ++A+KQ+ +S +E + EI ++
Sbjct: 25 KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDL--QEIIKEISIMQQCD 82
Query: 714 HQNLVKLYGCCIEGNQLLLVYEY 736
++VK YG + L +V EY
Sbjct: 83 SPHVVKYYGSYFKNTDLWIVMEY 105
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 23 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 81
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 82 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 112
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 666 KIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
++G+G FG V L D G V+AVK+L +++ R+F EI ++ +LQH N+VK
Sbjct: 20 QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 79
Query: 721 YGCCIEGNQ--LLLVYEYLENNSLARAL 746
G C + L L+ E+L SL L
Sbjct: 80 KGVCYSAGRRNLKLIMEFLPYGSLREYL 107
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 76
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 77 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 107
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 24 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 82
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 83 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 113
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 19 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 77
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 78 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 108
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 28 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 86
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 87 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 117
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 76
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 77 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 107
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 76
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 77 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 107
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 24 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 82
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 83 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 113
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 26 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 84
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 85 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 115
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 13 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 71
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 72 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 102
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
++G G FG V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 14 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAV 72
Query: 724 CIEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 73 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 103
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+IG G FG V+ G + +A+K + + +F+ E ++ L H LV+LYG
Sbjct: 13 VQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 71
Query: 724 CIEGNQLLLVYEYLENNSLARAL 746
C+E + LV E++E+ L+ L
Sbjct: 72 CLEQAPICLVTEFMEHGCLSDYL 94
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKG------TLSDGAVIAVKQLSSK-SKQGNREFVNEIGMISA 711
NN + IGEG FG V++ ++AVK L + S +F E +++
Sbjct: 47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 106
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYL---ENNSLARALFGNAITKITYT 757
+ N+VKL G C G + L++EY+ + N R++ + + ++++
Sbjct: 107 FDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHS 155
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 661 FDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGN---REFVNEIGMISALQHQN 716
F +IG G FG VY + + V+A+K++S KQ N ++ + E+ + L+H N
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 717 LVKLYGCCIEGNQLLLVYEY 736
++ GC + + LV EY
Sbjct: 77 TIQYRGCYLREHTAWLVMEY 96
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 661 FDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGN---REFVNEIGMISALQHQN 716
F +IG G FG VY + + V+A+K++S KQ N ++ + E+ + L+H N
Sbjct: 56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 717 LVKLYGCCIEGNQLLLVYEY 736
++ GC + + LV EY
Sbjct: 116 TIQYRGCYLREHTAWLVMEY 135
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 152/384 (39%), Gaps = 63/384 (16%)
Query: 39 SIFRKLNFRNGQVN--------QTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTV- 89
+IF+ LNF G N Q S T+ W T +D + + + + +C ++V
Sbjct: 199 TIFQSLNF-GGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDIS---SAMLKGLCEMSVE 254
Query: 90 -ILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGS 148
+ L+ + + F T LQE+DL+ + G LP L L KL++ N
Sbjct: 255 SLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQL 313
Query: 149 IPLEIGDISTLEELVLEDNQL-----VGPLPENLGNLKSLRRILLSSNNFTGS--IPESY 201
+ + +L L + N VG L E LGNL++L LS N+ S
Sbjct: 314 CQISAANFPSLTHLYIRGNVKKLHLGVGCL-EKLGNLQTLD---LSHNDIEASDCCSLQL 369
Query: 202 GNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ---------- 251
NL +L + + G +L+ LDL T L P + Q
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 252 ------------LKNLTELRISDLKGSS------SSFPNLQDMKKMERLILRNCLITGRI 293
L L LR +LKG+ + LQ + +E LIL +C +
Sbjct: 430 TYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSID 489
Query: 294 PEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDW--ILTSEKN 351
+ + + +DLS N LT L +LK I Y+ L NS++ P IL+ +
Sbjct: 490 QQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQST 548
Query: 352 LDLSYNNFTESSPATCRESRVNIL 375
++LS+N P C S ++ L
Sbjct: 549 INLSHN------PLDCTCSNIHFL 566
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 655 KAATNNFDAANK---IGEGGFGPVYK-GTLSDGAVIAVKQLSSKSKQGNREFVNEIGMIS 710
+ A N+F +K +G G FG V+K + G +A K + ++ + E NEI +++
Sbjct: 82 QGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMN 141
Query: 711 ALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
L H NL++LY N ++LV EY++ L
Sbjct: 142 QLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLSDGAVIAVK--QLSSKSKQGNREFVNEIGMISALQHQN 716
+ K+GEG +G VYK S G ++A+K +L ++ + + EI ++ L H N
Sbjct: 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN 80
Query: 717 LVKLYGCCIEGNQLLLVYEYLENN 740
+V L L LV+E++E +
Sbjct: 81 IVSLIDVIHSERCLTLVFEFMEKD 104
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLSDGAVIAVK--QLSSKSKQGNREFVNEIGMISALQHQN 716
+ K+GEG +G VYK S G ++A+K +L ++ + + EI ++ L H N
Sbjct: 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN 80
Query: 717 LVKLYGCCIEGNQLLLVYEYLENN 740
+V L L LV+E++E +
Sbjct: 81 IVSLIDVIHSERCLTLVFEFMEKD 104
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL------SDGAVIAVKQLSSKSKQGN-REFVNEIGMISA 711
N +GEG FG V K T + +AVK L + R+ ++E ++
Sbjct: 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ 82
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+ H +++KLYG C + LLL+ EY + SL
Sbjct: 83 VNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL------SDGAVIAVKQLSSKSKQGN-REFVNEIGMISA 711
N +GEG FG V K T + +AVK L + R+ ++E ++
Sbjct: 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ 82
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+ H +++KLYG C + LLL+ EY + SL
Sbjct: 83 VNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL------SDGAVIAVKQLSSKSKQGN-REFVNEIGMISA 711
N +GEG FG V K T + +AVK L + R+ ++E ++
Sbjct: 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ 82
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+ H +++KLYG C + LLL+ EY + SL
Sbjct: 83 VNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 85 CHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
CH+ V+ L V P++ T L +DL N F L+NL L+++ N+
Sbjct: 31 CHLRVVQCSDLGLEKV-PKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 145 LSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNL 204
+S P + LE L L NQL LPE + K+L+ + + N T + L
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGL 144
Query: 205 KNLTEFRIDGSNLTGR-IPN--FIGNWTKLDRLDLQGTSLEGPIPSTISQ--LKNLTELR 259
+ + + L I N F G KL + + T++ +TI Q +LTEL
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNI-----TTIPQGLPPSLTELH 198
Query: 260 ISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPG 319
+ K + +L+ + + +L L I+ + + L+ L L+ N+L VPG
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG 257
Query: 320 ILQNLKKIDYIFLTNNSLSG 339
L + K I ++L NN++S
Sbjct: 258 GLADHKYIQVVYLHNNNISA 277
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 265 GSSSSFPNLQDMKKMERLILRNCLITGRI--------PEYIEDMT-DLKILDLSFNQLTG 315
G FP + +++ M + C R+ + +D+ D +LDL N++T
Sbjct: 7 GPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE 66
Query: 316 PVPGILQNLKKIDYIFLTNNSLSGTLPDWI--LTSEKNLDLSYNN---FTESSPATCRES 370
G +NLK + + L NN +S P L + L LS N E P T +E
Sbjct: 67 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126
Query: 371 RVN 373
RV+
Sbjct: 127 RVH 129
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 641 GLDLQTG--YF-TLRQIKAATNNFDAAN------KIGEGGFGPVYKGTLSDGAVIAV-KQ 690
G+DL T YF +++Q + T + + + ++G+G FG VYK + +V+A K
Sbjct: 10 GVDLGTENLYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKV 69
Query: 691 LSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEY 736
+ +KS++ +++ EI ++++ H N+VKL N L ++ E+
Sbjct: 70 IDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF 115
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 641 GLDLQTG--YF-TLRQIKAATNNFDAAN------KIGEGGFGPVYKGTLSDGAVIAV-KQ 690
G+DL T YF +++Q + T + + + ++G+G FG VYK + +V+A K
Sbjct: 10 GVDLGTENLYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKV 69
Query: 691 LSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEY 736
+ +KS++ +++ EI ++++ H N+VKL N L ++ E+
Sbjct: 70 IDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF 115
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 85 CHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
CH+ V+ L V P++ T L +DL N F L+NL L+++ N+
Sbjct: 31 CHLRVVQCSDLGLEKV-PKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 145 LSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNL 204
+S P + LE L L NQL LPE + K+L+ + + N T + L
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGL 144
Query: 205 KNLTEFRIDGSNLTGR-IPN--FIGNWTKLDRLDLQGTSLEGPIPSTISQ--LKNLTELR 259
+ + + L I N F G KL + + T++ +TI Q +LTEL
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNI-----TTIPQGLPPSLTELH 198
Query: 260 ISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPG 319
+ K + +L+ + + +L L I+ + + L+ L L+ N+L VPG
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG 257
Query: 320 ILQNLKKIDYIFLTNNSLSG 339
L + K I ++L NN++S
Sbjct: 258 GLADHKYIQVVYLHNNNISA 277
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 265 GSSSSFPNLQDMKKMERLILRNCLITGRI--------PEYIEDMT-DLKILDLSFNQLTG 315
G FP + +++ M + C R+ + +D+ D +LDL N++T
Sbjct: 7 GPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE 66
Query: 316 PVPGILQNLKKIDYIFLTNNSLSGTLPDWI--LTSEKNLDLSYNN---FTESSPATCRES 370
G +NLK + + L NN +S P L + L LS N E P T +E
Sbjct: 67 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126
Query: 371 RVN 373
RV+
Sbjct: 127 RVH 129
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 642 LDLQTGYFTLRQIKAATNN----------FDAANKIGEGGFGPV-YKGTLSDGAVIAVKQ 690
L Q+G T Q KAA D+ KIGEG G V G +AVK
Sbjct: 18 LYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKM 77
Query: 691 LSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+ + +Q NE+ ++ QH N+V++Y + G +L ++ E+L+ +L
Sbjct: 78 MDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGAL 129
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 641 GLDLQTG--YF-TLRQIKAATNNFDAAN------KIGEGGFGPVYKGTLSDGAVIAV-KQ 690
G+DL T YF +++Q + T + + + ++G+G FG VYK + +V+A K
Sbjct: 10 GVDLGTENLYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKV 69
Query: 691 LSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEY 736
+ +KS++ +++ EI ++++ H N+VKL N L ++ E+
Sbjct: 70 IDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF 115
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIGEG G V T G +AVK++ + +Q NE+ ++ H N+V +Y
Sbjct: 52 KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYSSY 111
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V E+LE +L
Sbjct: 112 LVGDELWVVMEFLEGGAL 129
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V G +A+K + S + EF+ E ++ L H+ LV+LYG C
Sbjct: 14 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-EFIEEAKVMMNLSHEKLVQLYGVC 72
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ EY+ N L
Sbjct: 73 TKQRPIFIITEYMANGCL 90
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V G +A+K + S + EF+ E ++ L H+ LV+LYG C
Sbjct: 15 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-EFIEEAKVMMNLSHEKLVQLYGVC 73
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ EY+ N L
Sbjct: 74 TKQRPIFIITEYMANGCL 91
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V G +A+K + S + EF+ E ++ L H+ LV+LYG C
Sbjct: 30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-EFIEEAKVMMNLSHEKLVQLYGVC 88
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ EY+ N L
Sbjct: 89 TKQRPIFIITEYMANGCL 106
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
Query: 102 PEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEE 161
P F L LQ + L N +F L NLT L + GNR+S + +L+
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 162 LVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRI-DGSNLTGR 220
L+L N++ P +L L + L +NN + E+ L+ L R+ D +
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 240
Query: 221 IPNFIGNWTKLDRLDLQGTSLEGPIPSTISQL---KNLTELRISDLKGSS 267
+ W + +G+S E +P ++ Q ++L L +DL+G +
Sbjct: 241 RARPLWAWLQ----KFRGSSSE--VPCSLPQRLAGRDLKRLAANDLQGCA 284
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 1/200 (0%)
Query: 137 KLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGS 196
++ + GNR+S L L L N L L L ++ LS N S
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 197 I-PESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL 255
+ P ++ L L +D L P L L LQ +L+ T L NL
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 154
Query: 256 TELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTG 315
T L + + SS + + ++RL+L + P D+ L L L N L+
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Query: 316 PVPGILQNLKKIDYIFLTNN 335
L L+ + Y+ L +N
Sbjct: 215 LPTEALAPLRALQYLRLNDN 234
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 96 NLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGD 155
L V P F L L + L R P F L L L + N L D
Sbjct: 91 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 150
Query: 156 ISTLEELVLEDNQLVGPLPEN-LGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDG 214
+ L L L N+ + +PE L SL R+LL N P ++ +L L +
Sbjct: 151 LGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 209
Query: 215 SNLTG 219
+NL+
Sbjct: 210 NNLSA 214
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V G +A+K + S + EF+ E ++ L H+ LV+LYG C
Sbjct: 30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-EFIEEAKVMMNLSHEKLVQLYGVC 88
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ EY+ N L
Sbjct: 89 TKQRPIFIITEYMANGCL 106
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 657 ATNNFDAANKIGEGGFGPVYKG--TLSDGAVIAVKQLSSKSKQGNRE--FVNEIGMISAL 712
+ + + K+GEG +G VYK T+++ V A+K++ + ++ + E+ ++ L
Sbjct: 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETV-AIKRIRLEHEEEGVPGTAIREVSLLKEL 90
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENN 740
QH+N+++L ++L L++EY EN+
Sbjct: 91 QHRNIIELKSVIHHNHRLHLIFEYAEND 118
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V G +A+K + S + EF+ E ++ L H+ LV+LYG C
Sbjct: 10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-EFIEEAKVMMNLSHEKLVQLYGVC 68
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ EY+ N L
Sbjct: 69 TKQRPIFIITEYMANGCL 86
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 154/380 (40%), Gaps = 51/380 (13%)
Query: 37 LQSIFRKLNFRNGQVN--------QTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVT 88
+ IF+ L F G +N Q S + W T +D++ T T+ V
Sbjct: 199 ISKIFQSLKF-GGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLT-SATFEGLCDMSVE 256
Query: 89 VILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGS 148
I L+ + + F T +QE+DL+ + NG LP + +L KL++ N
Sbjct: 257 SINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQL 315
Query: 149 IPLEIGDISTLEELVLEDNQLVGPL-PENLGNLKSLRRILLSSNNFTGS--IPESYGNLK 205
+ +L +L ++ N L L L++L+++ LS ++ S NL+
Sbjct: 316 CQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLR 375
Query: 206 NLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ-------------- 251
+L + + G +L+ LD+ T L P + Q
Sbjct: 376 HLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCL 435
Query: 252 --------LKNLTELRISDLKGSS------SSFPNLQDMKKMERLILRNCLITGRIPEYI 297
L L +LR +L+G+S S LQ + +E LIL +C + +
Sbjct: 436 LDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAF 495
Query: 298 EDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWI--LTSEKNLDLS 355
+ ++ LDLS N LTG L +LK + Y+ + +N++ P + L+ + ++LS
Sbjct: 496 HGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLS 554
Query: 356 YNNFTESSPATCRESRVNIL 375
+N P C S ++ +
Sbjct: 555 HN------PLDCTCSNIHFI 568
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V G +A+K + S + EF+ E ++ L H+ LV+LYG C
Sbjct: 15 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-EFIEEAKVMMNLSHEKLVQLYGVC 73
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ EY+ N L
Sbjct: 74 TKQRPIFIITEYMANGCL 91
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V G +A+K + S + EF+ E ++ L H+ LV+LYG C
Sbjct: 21 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-EFIEEAKVMMNLSHEKLVQLYGVC 79
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ EY+ N L
Sbjct: 80 TKQRPIFIITEYMANGCL 97
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL----SDGAV--IAVKQLSSKSKQGNRE-FVNEIGMISA 711
NN +G G FG V + T + AV +AVK L S + +E ++E+ ++S
Sbjct: 46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 105
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L QH+N+V L G C G +L++ EY
Sbjct: 106 LGQHENIVNLLGACTHGGPVLVITEY 131
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL----SDGAV--IAVKQLSSKSKQGNRE-FVNEIGMISA 711
NN +G G FG V + T + AV +AVK L S + +E ++E+ ++S
Sbjct: 46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 105
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L QH+N+V L G C G +L++ EY
Sbjct: 106 LGQHENIVNLLGACTHGGPVLVITEY 131
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G G V+ G + +AVK L S + F+ E ++ LQHQ LV+LY
Sbjct: 19 ERLGAGQAGEVWMGYYNGHTKVAVKSLKQGSMSPD-AFLAEANLMKQLQHQRLVRLYAVV 77
Query: 725 IEGNQLLLVYEYLENNSLARALFGNAITKIT 755
+ + ++ EY+EN SL L + K+T
Sbjct: 78 TQ-EPIYIITEYMENGSLVDFLKTPSGIKLT 107
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
Query: 102 PEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEE 161
P F L LQ + L N +F L NLT L + GNR+S + +L+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 162 LVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRI-DGSNLTGR 220
L+L N++ P +L L + L +NN + E+ L+ L R+ D +
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241
Query: 221 IPNFIGNWTKLDRLDLQGTSLEGPIPSTISQL---KNLTELRISDLKGSS 267
+ W + +G+S E +P ++ Q ++L L +DL+G +
Sbjct: 242 RARPLWAWLQ----KFRGSSSE--VPCSLPQRLAGRDLKRLAANDLQGCA 285
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 1/200 (0%)
Query: 137 KLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGS 196
++ + GNR+S L L L N L L L ++ LS N S
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 197 I-PESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL 255
+ P ++ L L +D L P L L LQ +L+ T L NL
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 256 TELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTG 315
T L + + SS + + ++RL+L + P D+ L L L N L+
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 316 PVPGILQNLKKIDYIFLTNN 335
L L+ + Y+ L +N
Sbjct: 216 LPTEALAPLRALQYLRLNDN 235
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 96 NLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGD 155
L V P F L L + L R P F L L L + N L D
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 156 ISTLEELVLEDNQLVGPLPEN-LGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDG 214
+ L L L N+ + +PE L SL R+LL N P ++ +L L +
Sbjct: 152 LGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 215 SNLTG 219
+NL+
Sbjct: 211 NNLSA 215
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL----SDGAV--IAVKQLSSKSKQGNRE-FVNEIGMISA 711
NN +G G FG V + T + AV +AVK L S + +E ++E+ ++S
Sbjct: 38 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 97
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L QH+N+V L G C G +L++ EY
Sbjct: 98 LGQHENIVNLLGACTHGGPVLVITEY 123
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL----SDGAV--IAVKQLSSKSKQGNRE-FVNEIGMISA 711
NN +G G FG V + T + AV +AVK L S + +E ++E+ ++S
Sbjct: 31 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 90
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L QH+N+V L G C G +L++ EY
Sbjct: 91 LGQHENIVNLLGACTHGGPVLVITEY 116
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V+ G ++ +AVK L + + F+ E ++ LQH LV+LY
Sbjct: 19 KRLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVV 77
Query: 725 IEGNQLLLVYEYLENNSL 742
+ ++ EY+ SL
Sbjct: 78 TREEPIYIITEYMAKGSL 95
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 124/292 (42%), Gaps = 62/292 (21%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE---- 152
L + P NLT L ++ ++ N P A L NLT L + N+++ PL+
Sbjct: 75 LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTN 130
Query: 153 ----------IGDIS------TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTG- 195
I DIS +L++L NQ+ P L NL +L R+ +SSN +
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI 188
Query: 196 SIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL 255
S+ NL++L S++T +G T LD L L G L+ T++ L NL
Sbjct: 189 SVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI--GTLASLTNL 241
Query: 256 TELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTG 315
T+L +++ S+ L + K+ L L I+ P + +T L L+L+ NQL
Sbjct: 242 TDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 297
Query: 316 PVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDLSYNNFTESSPATC 367
P + NLK + Y L L +NN ++ SP +
Sbjct: 298 ISP--ISNLKNLTY----------------------LTLYFNNISDISPVSS 325
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 156 ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGS 215
++ L ++ +NQL P L NL L IL+++N P NL NLT + +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 216 NLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQD 275
+T P + N T L+RL+L ++ S IS L LT L+ L SS+ + D
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQ--QLSFSSNQ---VTD 165
Query: 276 MKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+K + L T L+ LD+S N+++ +L L ++ + TNN
Sbjct: 166 LKPLANL------------------TTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 336 SLSGTLPDWILTSEKNLDLSYNNFTE 361
+S P ILT+ L L+ N +
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKD 231
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 80 SNNTVCHVTVILLKGFNLAGVIPEE--------FGNLTFLQEVDLSRNYFNGSLPKSFAR 131
S+N V ++V L K NL +I G LT L E+ L+ N + A
Sbjct: 181 SSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLAS 237
Query: 132 LQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L NLT L + N++S PL ++ L EL L NQ+ P L L +L + L+ N
Sbjct: 238 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 192 NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ 251
P S NLKNLT + +N++ P + + TKL RL + S +S
Sbjct: 294 QLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV-----SDVSS 344
Query: 252 LKNLTEL--------RISDL 263
L NLT + +ISDL
Sbjct: 345 LANLTNINWLSAGHNQISDL 364
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDL 354
EY+ ++T + + S NQLT P L+NL K+ I + NN ++ P LT+ L L
Sbjct: 60 EYLNNLTQI---NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 355 SYNNFTESSP 364
N T+ P
Sbjct: 115 FNNQITDIDP 124
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL----SDGAV--IAVKQLSSKSKQGNRE-FVNEIGMISA 711
NN +G G FG V + T + AV +AVK L S + +E ++E+ ++S
Sbjct: 46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 105
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L QH+N+V L G C G +L++ EY
Sbjct: 106 LGQHENIVNLLGACTHGGPVLVITEY 131
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL----SDGAV--IAVKQLSSKSKQGNRE-FVNEIGMISA 711
NN +G G FG V + T + AV +AVK L S + +E ++E+ ++S
Sbjct: 46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 105
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L QH+N+V L G C G +L++ EY
Sbjct: 106 LGQHENIVNLLGACTHGGPVLVITEY 131
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 124/292 (42%), Gaps = 62/292 (21%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE---- 152
L + P NLT L ++ ++ N P A L NLT L + N+++ PL+
Sbjct: 75 LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTN 130
Query: 153 ----------IGDIS------TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTG- 195
I DIS +L++L NQ+ P L NL +L R+ +SSN +
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI 188
Query: 196 SIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL 255
S+ NL++L S++T +G T LD L L G L+ T++ L NL
Sbjct: 189 SVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI--GTLASLTNL 241
Query: 256 TELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTG 315
T+L +++ S+ L + K+ L L I+ P + +T L L+L+ NQL
Sbjct: 242 TDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 297
Query: 316 PVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDLSYNNFTESSPATC 367
P + NLK + Y L L +NN ++ SP +
Sbjct: 298 ISP--ISNLKNLTY----------------------LTLYFNNISDISPVSS 325
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 156 ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGS 215
++ L ++ +NQL P L NL L IL+++N P NL NLT + +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 216 NLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQD 275
+T P + N T L+RL+L ++ S IS L LT L+ L SS+ + D
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQ--QLSFSSNQ---VTD 165
Query: 276 MKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+K + L T L+ LD+S N+++ +L L ++ + TNN
Sbjct: 166 LKPLANL------------------TTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 336 SLSGTLPDWILTSEKNLDLSYNNFTE 361
+S P ILT+ L L+ N +
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKD 231
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 80 SNNTVCHVTVILLKGFNLAGVIPEE--------FGNLTFLQEVDLSRNYFNGSLPKSFAR 131
S+N V ++V L K NL +I G LT L E+ L+ N + A
Sbjct: 181 SSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLAS 237
Query: 132 LQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L NLT L + N++S PL ++ L EL L NQ+ P L L +L + L+ N
Sbjct: 238 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 192 NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ 251
P S NLKNLT + +N++ P + + TKL RL + S +S
Sbjct: 294 QLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-----SDVSS 344
Query: 252 LKNLTEL--------RISDL 263
L NLT + +ISDL
Sbjct: 345 LANLTNINWLSAGHNQISDL 364
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDL 354
EY+ ++T + + S NQLT P L+NL K+ I + NN ++ P LT+ L L
Sbjct: 60 EYLNNLTQI---NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 355 SYNNFTESSP 364
N T+ P
Sbjct: 115 FNNQITDIDP 124
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 665 NKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNLVKLY 721
+K+GEG + VYKG L+D ++A+K++ + ++G + E+ ++ L+H N+V L+
Sbjct: 8 DKLGEGTYATVYKGKSKLTDN-LVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLH 66
Query: 722 GCCIEGNQLLLVYEYLENN 740
L LV+EYL+ +
Sbjct: 67 DIIHTEKSLTLVFEYLDKD 85
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
K+G G FG V+ G ++ +AVK L + + F+ E ++ LQH LV+LY
Sbjct: 18 KKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVV 76
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ E++ SL
Sbjct: 77 TKEEPIYIITEFMAKGSL 94
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQL--SSKSKQGNREFVNEIGMISALQHQ 715
++ KIGEG +G V+K D G ++A+K+ S + + EI M+ L+H
Sbjct: 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHP 62
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSL 742
NLV L +L LV+EY ++ L
Sbjct: 63 NLVNLLEVFRRKRRLHLVFEYCDHTVL 89
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 124/292 (42%), Gaps = 62/292 (21%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE---- 152
L + P NLT L ++ ++ N P A L NLT L + N+++ PL+
Sbjct: 75 LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTN 130
Query: 153 ----------IGDIS------TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTG- 195
I DIS +L++L NQ+ P L NL +L R+ +SSN +
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI 188
Query: 196 SIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL 255
S+ NL++L S++T +G T LD L L G L+ T++ L NL
Sbjct: 189 SVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI--GTLASLTNL 241
Query: 256 TELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTG 315
T+L +++ S+ L + K+ L L I+ P + +T L L+L+ NQL
Sbjct: 242 TDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 297
Query: 316 PVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDLSYNNFTESSPATC 367
P + NLK + Y L L +NN ++ SP +
Sbjct: 298 ISP--ISNLKNLTY----------------------LTLYFNNISDISPVSS 325
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 156 ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGS 215
++ L ++ +NQL P L NL L IL+++N P NL NLT + +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 216 NLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQD 275
+T P + N T L+RL+L ++ S IS L LT L+ L SS+ + D
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQ--QLNFSSNQ---VTD 165
Query: 276 MKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+K + L T L+ LD+S N+++ +L L ++ + TNN
Sbjct: 166 LKPLANL------------------TTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 336 SLSGTLPDWILTSEKNLDLSYNNFTE 361
+S P ILT+ L L+ N +
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKD 231
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 80 SNNTVCHVTVILLKGFNLAGVIPEE--------FGNLTFLQEVDLSRNYFNGSLPKSFAR 131
S+N V ++V L K NL +I G LT L E+ L+ N + A
Sbjct: 181 SSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLAS 237
Query: 132 LQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L NLT L + N++S PL ++ L EL L NQ+ P L L +L + L+ N
Sbjct: 238 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 192 NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ 251
P S NLKNLT + +N++ P + + TKL RL + S +S
Sbjct: 294 QLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-----SDVSS 344
Query: 252 LKNLTEL--------RISDL 263
L NLT + +ISDL
Sbjct: 345 LANLTNINWLSAGHNQISDL 364
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDL 354
EY+ ++T + + S NQLT P L+NL K+ I + NN ++ P LT+ L L
Sbjct: 60 EYLNNLTQI---NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 355 SYNNFTESSP 364
N T+ P
Sbjct: 115 FNNQITDIDP 124
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 6/179 (3%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVL 164
F +L L+ + LSRN+ +F L NL L + NRL+ +S L+EL L
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143
Query: 165 EDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPE-SYGNLKNLTEFRIDGSNLTGRIPN 223
+N + + SLRR+ L I E ++ L NL + NL IPN
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202
Query: 224 FIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRI--SDLKG-SSSSFPNLQDMKKM 279
KLD LDL G L P + L +L +L + S ++ ++F NLQ + ++
Sbjct: 203 LTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 19/220 (8%)
Query: 152 EIGD-ISTLEELV-LEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTE 209
E+ D IST L+ L +NQ+ + +L+ L + LS N+ ++ L NL
Sbjct: 57 EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116
Query: 210 FRIDGSNLTGRIPN--FIGNWTKLDRLDLQGTSLEGPIPS-TISQLKNLTELRISDLKG- 265
+ + LT IPN F+ +KL L L+ +E IPS +++ +L L + +LK
Sbjct: 117 LELFDNRLTT-IPNGAFVY-LSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRL 173
Query: 266 ---SSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQ 322
S +F L +++ + L C + IP + + L LDLS N L+ PG Q
Sbjct: 174 SYISEGAFEGLSNLRYLN---LAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 323 NLKKIDYIFLTNNSLSGTLPDWI--LTSEKNLDLSYNNFT 360
L + +++ + + + L S ++L++NN T
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 661 FDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++ ++G+G FG VYK + GA+ A K + +KS++ +++ EI +++ H +VK
Sbjct: 13 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 72
Query: 720 LYGCCIEGNQLLLVYEY 736
L G +L ++ E+
Sbjct: 73 LLGAYYHDGKLWIMIEF 89
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGN---REFVNEIGMISALQHQNLVKLYG 722
K+G+G FG V+ GT + +A+K L K GN F+ E ++ L+H+ LV+LY
Sbjct: 192 KLGQGCFGEVWMGTWNGTTRVAIKTL----KPGNMSPEAFLQEAQVMKKLRHEKLVQLYA 247
Query: 723 CCIEGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 248 VVSE-EPIYIVTEYMSKGSLLDFLKGE 273
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 661 FDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
++ ++G+G FG VYK + GA+ A K + +KS++ +++ EI +++ H +VK
Sbjct: 21 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 80
Query: 720 LYGCCIEGNQLLLVYEY 736
L G +L ++ E+
Sbjct: 81 LLGAYYHDGKLWIMIEF 97
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 18 QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 77
Query: 725 IEGNQLLLVYEYLENNSLARALFGN 749
+ QL +V ++ E +SL L +
Sbjct: 78 TK-PQLAIVTQWCEGSSLYHHLHAS 101
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 31 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 88
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 89 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 131
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 649 FTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIG 707
+L + + + +K+G G FG VY+G ++ +AVK L + + EF+ E
Sbjct: 1 MSLDKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAA 59
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYL 737
++ ++H NLV+L G C ++ E++
Sbjct: 60 VMKEIKHPNLVQLLGVCTREPPFYIITEFM 89
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 641 GLDLQTG--YF-TLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSK 696
G+DL T YF ++ + + + +K+G G +G VY G ++ +AVK L +
Sbjct: 11 GVDLGTENLYFQSMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKEDTM 70
Query: 697 QGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+ EF+ E ++ ++H NLV+L G C +V EY+ +L
Sbjct: 71 E-VEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNL 115
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 21 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 78
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 79 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 121
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSS-KSKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V +G L + +A+K L +++ REF++E ++ +H N+++L
Sbjct: 22 IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLE 81
Query: 722 GCCIEGNQLLLVYEYLENNSL 742
G ++++ E++EN +L
Sbjct: 82 GVVTNSMPVMILTEFMENGAL 102
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 30 QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 725 IEGNQLLLVYEYLENNSLARALFGN 749
+ QL +V ++ E +SL L +
Sbjct: 90 TK-PQLAIVTQWCEGSSLYHHLHAS 113
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 4 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 61
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V EY+EN SL
Sbjct: 62 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 104
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 663 AANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 17 VGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 76
Query: 723 CCIEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 77 YSTK-PQLAIVTQWCEGSSLYHHL 99
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQL--SSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+GEG +G V K D G ++A+K+ S K + + EI ++ L+H+NLV L
Sbjct: 33 VGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEV 92
Query: 724 CIEGNQLLLVYEYLENNSLAR-ALFGNAI 751
C + + LV+E++++ L LF N +
Sbjct: 93 CKKKKRWYLVFEFVDHTILDDLELFPNGL 121
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 652 RQIKAATNNFDAANKIGEGGFGPVYKGTL----SDGAVIAVKQLSSK-SKQGNREFVNEI 706
R+I+A+ + + IG G G V G L +A+K L + +++ R+F++E
Sbjct: 44 REIEASRIHIEKI--IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEA 101
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
++ H N+++L G G ++V EY+EN SL
Sbjct: 102 SIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSL 137
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 663 AANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 40 VGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 99
Query: 723 CCIEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 100 YSTK-PQLAIVTQWCEGSSLYHHL 122
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 14 QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 725 IEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 74 TK-PQLAIVTQWCEGSSLYHHL 94
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 652 RQIKAATNNFDAANKIGEGGFGPVYKGTL----SDGAVIAVKQLSSK-SKQGNREFVNEI 706
R+I+A+ + + IG G G V G L +A+K L + +++ R+F++E
Sbjct: 44 REIEASRIHIEKI--IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEA 101
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
++ H N+++L G G ++V EY+EN SL
Sbjct: 102 SIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSL 137
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 663 AANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 40 VGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 99
Query: 723 CCIEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 100 YSTK-PQLAIVTQWCEGSSLYHHL 122
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 663 AANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 39 VGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 98
Query: 723 CCIEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 99 YSTKP-QLAIVTQWCEGSSLYHHL 121
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 663 AANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 12 VGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 71
Query: 723 CCIEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 72 YSTK-PQLAIVTQWCEGSSLYHHL 94
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 30 QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 725 IEGNQLLLVYEYLENNSLARALFGN 749
QL +V ++ E +SL L +
Sbjct: 90 T-APQLAIVTQWCEGSSLYHHLHAS 113
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 663 AANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 32 VGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 91
Query: 723 CCIEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 92 YSTKP-QLAIVTQWCEGSSLYHHL 114
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 19 QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 725 IEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 79 TK-PQLAIVTQWCEGSSLYHHL 99
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSSK-SKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V +G L + +A+K L +++ REF++E ++ +H N+++L
Sbjct: 24 IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLE 83
Query: 722 GCCIEGNQLLLVYEYLENNSL 742
G ++++ E++EN +L
Sbjct: 84 GVVTNSMPVMILTEFMENGAL 104
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 14 QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 725 IEGNQLLLVYEYLENNSLARAL 746
QL +V ++ E +SL L
Sbjct: 74 T-APQLAIVTQWCEGSSLYHHL 94
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 651 LRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGA------VIAVKQLSSKSKQGNRE-FV 703
L++I + F ++GE FG VYKG L A +A+K L K++ RE F
Sbjct: 20 LKEISLSAVRF--MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFR 77
Query: 704 NEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+E + + LQH N+V L G + L +++ Y + L L
Sbjct: 78 HEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFL 120
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
+IG G FG VYKG + + +++ + Q + F NE+G++ +H N++ G
Sbjct: 16 QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 75
Query: 725 IEGNQLLLVYEYLENNSLARAL 746
+ QL +V ++ E +SL L
Sbjct: 76 TK-PQLAIVTQWCEGSSLYHHL 96
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 651 LRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGA------VIAVKQLSSKSKQGNRE-FV 703
L++I + F ++GE FG VYKG L A +A+K L K++ RE F
Sbjct: 3 LKEISLSAVRF--MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFR 60
Query: 704 NEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+E + + LQH N+V L G + L +++ Y + L L
Sbjct: 61 HEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFL 103
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 191 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 250 E-EPIYIVTEYMSKGSLLDFLKGE 272
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 18 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 76
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 77 E-EPIYIVTEYMSKGSLLDFLKGE 99
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 191 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 250 E-EPIYIVTEYMSKGSLLDFLKGE 272
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 25 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 84 E-EPIYIVIEYMSKGSLLDFLKGE 106
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 16 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 74
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 75 E-EPIYIVTEYMSKGSLLDFLKGE 97
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 15 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 73
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 74 E-EPIXIVTEYMSKGSLLDFLKGE 96
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 25 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 84 E-EPIYIVIEYMSKGSLLDFLKGE 106
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 14 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 72
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 73 E-EPIYIVTEYMSKGSLLDFLKGE 95
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 25 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 84 E-EPIYIVTEYMSKGSLLDFLKGE 106
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 25 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 84 E-EPIYIVTEYMSKGSLLDFLKGE 106
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 22 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 80
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 81 E-EPIYIVTEYMNKGSLLDFLKGE 103
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 274 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 332
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 333 E-EPIYIVTEYMSKGSLLDFLKGE 355
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 22 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 80
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 81 E-EPIYIVTEYMNKGSLLDFLKGE 103
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 25 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 84 E-EPIYIVCEYMSKGSLLDFLKGE 106
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
+G+G FG K T + G V+ +K+L ++ R F+ E+ ++ L+H N++K G
Sbjct: 18 LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77
Query: 726 EGNQLLLVYEYLENNSL 742
+ +L + EY++ +L
Sbjct: 78 KDKRLNFITEYIKGGTL 94
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSS-KSKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V G L +A+K L S +++ R+F++E ++ H N++ L
Sbjct: 41 IGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLE 100
Query: 722 GCCIEGNQLLLVYEYLENNSLARALFGN 749
G + ++++ E++EN SL L N
Sbjct: 101 GVVTKSTPVMIITEFMENGSLDSFLRQN 128
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V G L +A+K L +++ R+F+ E ++ H N+V L
Sbjct: 51 IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLE 110
Query: 722 GCCIEGNQLLLVYEYLENNSL 742
G G +++V E++EN +L
Sbjct: 111 GVVTRGKPVMIVIEFMENGAL 131
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 77/200 (38%), Gaps = 1/200 (0%)
Query: 137 KLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGS 196
++ + GNR+S L L L N L G L L ++ LS N
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 197 I-PESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL 255
+ P ++ L +L +D L P L L LQ +L+ +T L NL
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 256 TELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTG 315
T L + + S + + ++RL+L + P D+ L L L N L+
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM 214
Query: 316 PVPGILQNLKKIDYIFLTNN 335
+L L+ + Y+ L +N
Sbjct: 215 LPAEVLVPLRSLQYLRLNDN 234
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 86 HVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRL 145
H+ + L L + P F L LQ + L N +F L NLT L + GNR+
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 146 SGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLK 205
+ +L+ L+L N + P +L L + L +NN + E L+
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLR 224
Query: 206 NLTEFRI-DGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGP--IPSTISQLKNLTELRISD 262
+L R+ D + + W + +G+S E P +P ++ ++L L SD
Sbjct: 225 SLQYLRLNDNPWVCDCRARPLWAWLQ----KFRGSSSEVPCNLPQRLAG-RDLKRLAASD 279
Query: 263 LKGSS 267
L+G +
Sbjct: 280 LEGCA 284
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 27/158 (17%)
Query: 87 VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRN-YFNGSLPKSFARLQNLTKLLILGNRL 145
+T++ L LAG+ F LT L+++DLS N P +F L +L L + L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 146 SGSIPLEIGDISTLEELVLEDNQLVGPLPEN----LGNL--------------------- 180
P ++ L+ L L+DN L LP+N LGNL
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 181 KSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNLT 218
SL R+LL N+ P ++ +L L + +NL+
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 3/163 (1%)
Query: 182 SLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTS- 240
S +RI L N + S+ + +NLT + + L G T L++LDL +
Sbjct: 32 SSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQ 91
Query: 241 LEGPIPSTISQLKNLTELRISDLKGSSSSFPNL-QDMKKMERLILRNCLITGRIPEYIED 299
L P+T L +L L + D G P L + + ++ L L++ + D
Sbjct: 92 LRVVDPTTFRGLGHLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRD 150
Query: 300 MTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLP 342
+ +L L L N++ + L +D + L N ++ P
Sbjct: 151 LGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 667 IGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFV----NEIGMISALQHQNLVKLYG 722
IG GGFG VY+ G +AVK + + + E + + L+H N++ L G
Sbjct: 15 IGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73
Query: 723 CCIEGNQLLLVYEYLENNSLARALFGNAI 751
C++ L LV E+ L R L G I
Sbjct: 74 VCLKEPNLCLVMEFARGGPLNRVLSGKRI 102
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 650 TLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGM 708
+L + + + +K+G G +G VY+G ++ +AVK L + + EF+ E +
Sbjct: 2 SLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAV 60
Query: 709 ISALQHQNLVKLYGCCIEGNQLLLVYEYL 737
+ ++H NLV+L G C ++ E++
Sbjct: 61 MKEIKHPNLVQLLGVCTREPPFYIIIEFM 89
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSKSKQGNREFVNEIGMISAL 712
N+ + IGEG FG V K + D A+ +K+ +SK +R+F E+ ++ L
Sbjct: 15 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDD--HRDFAGELEVLCKL 72
Query: 713 -QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSL 760
H N++ L G C L L EY + +L L + + + F++
Sbjct: 73 GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAI 121
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 191 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 250 E-EPIYIVGEYMSKGSLLDFLKGE 272
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSS-KSKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V G L +A+K L S +++ R+F++E ++ H N++ L
Sbjct: 15 IGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLE 74
Query: 722 GCCIEGNQLLLVYEYLENNSLARALFGN 749
G + ++++ E++EN SL L N
Sbjct: 75 GVVTKSTPVMIITEFMENGSLDSFLRQN 102
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 82
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 83 CTREPPFYIIIEFM 96
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSKSKQGNREFVNEIGMISAL 712
N+ + IGEG FG V K + D A+ +K+ +SK +R+F E+ ++ L
Sbjct: 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDD--HRDFAGELEVLCKL 82
Query: 713 -QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSL 760
H N++ L G C L L EY + +L L + + + F++
Sbjct: 83 GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAI 131
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 82
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 83 CTREPPFYIITEFM 96
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 649 FTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIG 707
+L + + + +K+G G +G VY+G ++ +AVK L + + EF+ E
Sbjct: 1 MSLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAA 59
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYL 737
++ ++H NLV+L G C ++ E++
Sbjct: 60 VMKEIKHPNLVQLLGVCTREPPFYIITEFM 89
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSKSKQGNREFVNEIGMISAL 712
N+ + IGEG FG V K + D A+ +K+ +SK +R+F E+ ++ L
Sbjct: 22 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDD--HRDFAGELEVLCKL 79
Query: 713 -QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSL 760
H N++ L G C L L EY + +L L + + + F++
Sbjct: 80 GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAI 128
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 77
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 78 CTREPPFYIITEFM 91
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 20 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 78
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 79 CTREPPFYIIIEFM 92
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNL 717
+++D ++G G FG V++ T + G A K + + + EI +S L+H L
Sbjct: 51 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 110
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSL 742
V L+ + N+++++YE++ L
Sbjct: 111 VNLHDAFEDDNEMVMIYEFMSGGEL 135
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 82
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 83 CTREPPFYIITEFM 96
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 82
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 83 CTREPPFYIITEFM 96
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 81
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 82 CTREPPFYIITEFM 95
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 77
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 78 CTREPPFYIITEFM 91
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 77
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 78 CTREPPFYIIIEFM 91
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 77
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 78 CTREPPFYIIIEFM 91
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ ++H+ LV+LY
Sbjct: 25 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKIRHEKLVQLYAVVS 83
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ SL L G
Sbjct: 84 E-EPIYIVTEYMSKGSLLDFLKGE 106
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 20 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 78
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 79 CTREPPFYIITEFM 92
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 77
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 78 CTREPPFYIITEFM 91
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 79
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 80 CTREPPFYIITEFM 93
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 77
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 78 CTREPPFYIITEFM 91
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 79
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 80 CTREPPFYIITEFM 93
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 21 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 79
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 80 CTREPPFYIITEFM 93
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGV 284
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 285 CTREPPFYIITEFM 298
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNL 717
+++D ++G G FG V++ T + G A K + + + EI +S L+H L
Sbjct: 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 216
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSL 742
V L+ + N+++++YE++ L
Sbjct: 217 VNLHDAFEDDNEMVMIYEFMSGGEL 241
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 24 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 82
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 83 CTREPPFYIITEFM 96
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 32 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE-EFLKEAAVMKEIKHPNLVQLLGV 90
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 91 CTREPPFYIITEFM 104
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 265 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGV 323
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 324 CTREPPFYIITEFM 337
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 25 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ L L G
Sbjct: 84 E-EPIYIVMEYMSKGCLLDFLKGE 106
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISAL---- 712
T F KIG G FG V+K DG + A+K+ S K G+ + N + + A
Sbjct: 6 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKR-SKKPLAGSVDEQNALREVYAHAVLG 64
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGN 749
QH ++V+ + E + +L+ EY SLA A+ N
Sbjct: 65 QHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 101
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISAL---- 712
T F KIG G FG V+K DG + A+K+ S K G+ + N + + A
Sbjct: 8 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKR-SKKPLAGSVDEQNALREVYAHAVLG 66
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGN 749
QH ++V+ + E + +L+ EY SLA A+ N
Sbjct: 67 QHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 103
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAV-IAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+K+G G +G VY+G ++ +AVK L + + EF+ E ++ ++H NLV+L G
Sbjct: 223 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGV 281
Query: 724 CIEGNQLLLVYEYL 737
C ++ E++
Sbjct: 282 CTREPPFYIITEFM 295
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISAL---- 712
T F KIG G FG V+K DG + A+K+ S K G+ + N + + A
Sbjct: 8 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKR-SKKPLAGSVDEQNALREVYAHAVLG 66
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGN 749
QH ++V+ + E + +L+ EY SLA A+ N
Sbjct: 67 QHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 103
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V G L +A+K L +++ R+F+ E ++ H N++ L
Sbjct: 30 IGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLE 89
Query: 722 GCCIEGNQLLLVYEYLENNSL 742
G + +++V EY+EN SL
Sbjct: 90 GVVTKSKPVMIVTEYMENGSL 110
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSSK-SKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V G L +A+K L + + + R+F++E ++ H N++ L
Sbjct: 37 IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 96
Query: 722 GCCIEGNQLLLVYEYLENNSLARALFGN 749
G + ++++ EY+EN SL L N
Sbjct: 97 GVVTKCKPVMIITEYMENGSLDAFLRKN 124
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISAL---- 712
T F KIG G FG V+K DG + A+K+ S K G+ + N + + A
Sbjct: 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKR-SKKPLAGSVDEQNALREVYAHAVLG 68
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGN 749
QH ++V+ + E + +L+ EY SLA A+ N
Sbjct: 69 QHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 105
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 472 YKTARLAPQSLKYYGLCMLKGSYTVKLHFAEIMFTNDQTYKSLGKRMFDVSIQGKQVLKD 531
Y+T R S Y +G Y + L FAE+ F Q +++FDV + G V+KD
Sbjct: 61 YQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ------QKVFDVRVNGHTVVKD 114
Query: 532 FDIMEEAG 539
DI + G
Sbjct: 115 LDIFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 472 YKTARLAPQSLKYYGLCMLKGSYTVKLHFAEIMFTNDQTYKSLGKRMFDVSIQGKQVLKD 531
Y+T R S Y +G Y + L FAE+ F Q +++FDV + G V+KD
Sbjct: 57 YQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ------QKVFDVRVNGHTVVKD 110
Query: 532 FDIMEEAG 539
DI + G
Sbjct: 111 LDIFDRVG 118
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 654 IKAATNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLS----SKSKQG-NREFVNEIG 707
+K+ ++ + +GEG F VYK + ++A+K++ S++K G NR + EI
Sbjct: 5 VKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIK 64
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENN 740
++ L H N++ L + + LV++++E +
Sbjct: 65 LLQELSHPNIIGLLDAFGHKSNISLVFDFMETD 97
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSS-KSKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V G L +A+K L + + + R+F++E ++ H N++ L
Sbjct: 22 IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 81
Query: 722 GCCIEGNQLLLVYEYLENNSLARALFGN 749
G + ++++ EY+EN SL L N
Sbjct: 82 GVVTKCKPVMIITEYMENGSLDAFLRKN 109
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 666 KIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
K+G+G FG V+ GT + +A+K L + F+ E ++ L+H+ LV+LY
Sbjct: 25 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 726 EGNQLLLVYEYLENNSLARALFGN 749
E + +V EY+ L L G
Sbjct: 84 E-EPIYIVTEYMSKGCLLDFLKGE 106
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSL 760
++ L G C + L ++ EY +L L + Y++ +
Sbjct: 103 IIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDI 146
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSS-KSKQGNREFVNEIGMISALQHQNLVKLY 721
IG G FG V G L +A+K L + + + R+F++E ++ H N++ L
Sbjct: 16 IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 75
Query: 722 GCCIEGNQLLLVYEYLENNSLARALFGN 749
G + ++++ EY+EN SL L N
Sbjct: 76 GVVTKCKPVMIITEYMENGSLDAFLRKN 103
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 147
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 147
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V G +AVK + S + EF E + L H LVK YG C
Sbjct: 14 KELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSED-EFFQEAQTMMKLSHPKLVKFYGVC 72
Query: 725 IEGNQLLLVYEYLENNSLARAL 746
+ + +V EY+ N L L
Sbjct: 73 SKEYPIYIVTEYISNGCLLNYL 94
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 664 ANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGC 723
+ +IG G FG VYKG + + ++ + + + F NE+ ++ +H N++ G
Sbjct: 41 STRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGY 100
Query: 724 CIEGNQLLLVYEYLENNSLARAL 746
+ N L +V ++ E +SL + L
Sbjct: 101 MTKDN-LAIVTQWCEGSSLYKHL 122
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 147
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 82/208 (39%), Gaps = 32/208 (15%)
Query: 137 KLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNFTG 195
KL + N+LS ++ L L L DN+L LP + LK+L + ++ N
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 196 SIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL 255
+ L NL E R+D + L P + TKL L L L+ +L +L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 256 TELRI--SDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPE-YIEDMTDLKILDLSFNQ 312
ELR+ + LK R+PE + +T+LK L L NQ
Sbjct: 160 KELRLYNNQLK---------------------------RVPEGAFDKLTELKTLKLDNNQ 192
Query: 313 LTGPVPGILQNLKKIDYIFLTNNSLSGT 340
L G +L+K+ + L N T
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQENPWDCT 220
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 8/175 (4%)
Query: 92 LKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNRLSGSIP 150
L+ L+ + + F LT L+ + L+ N +LP F L+NL L + N+L ++P
Sbjct: 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALP 101
Query: 151 LEIGD-ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPES-YGNLKNLT 208
+ + D + L EL L+ NQL P +L L + L N S+P+ + L +L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160
Query: 209 EFRIDGSNLTGRIPN-FIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISD 262
E R+ + L R+P T+L L L L+ L+ L L++ +
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 103 IITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 147
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 636 DKELRGLDLQTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGT---LSDGAV---IAVK 689
D E +D + + L+ + N + +G G FG V T +S V +AVK
Sbjct: 23 DNEYFYVDFREYEYDLKW-EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVK 81
Query: 690 QLSSKSKQGNRE-FVNEIGMISAL-QHQNLVKLYGCCIEGNQLLLVYEY 736
L K+ RE ++E+ M++ L H+N+V L G C + L++EY
Sbjct: 82 MLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEY 130
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 147
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 123/291 (42%), Gaps = 61/291 (20%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE---- 152
L + P NLT L ++ ++ N P A L NLT L + N+++ PL+
Sbjct: 80 LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTN 135
Query: 153 ----------IGDISTLEELV-LED----NQLVGPLPENLGNLKSLRRILLSSNNFTG-S 196
I DIS L L L+ NQ+ P L NL +L R+ +SSN + S
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDIS 193
Query: 197 IPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLT 256
+ NL++L S++T +G T LD L L G L+ T++ L NLT
Sbjct: 194 VLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246
Query: 257 ELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGP 316
+L +++ S+ L + K+ L L I+ P + +T L L+L+ NQL
Sbjct: 247 DLDLAN--NQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302
Query: 317 VPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDLSYNNFTESSPATC 367
P + NLK + Y L L +NN ++ SP +
Sbjct: 303 SP--ISNLKNLTY----------------------LTLYFNNISDISPVSS 329
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 37/206 (17%)
Query: 156 ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGS 215
++ L ++ +NQL P L NL L IL+++N P NL NLT + +
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 216 NLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQD 275
+T P + N T L+RL+L ++ S IS L LT L+ + L +
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDLKPLAN 175
Query: 276 MKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+ +ERL D++ K+ D+S +L L ++ + TNN
Sbjct: 176 LTTLERL----------------DISSNKVSDIS----------VLAKLTNLESLIATNN 209
Query: 336 SLSGTLPDWILTSEKNLDLSYNNFTE 361
+S P ILT+ L L+ N +
Sbjct: 210 QISDITPLGILTNLDELSLNGNQLKD 235
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 80 SNNTVCHVTVILLKGFNLAGVIPEE--------FGNLTFLQEVDLSRNYFNGSLPKSFAR 131
S+N V ++V L K NL +I G LT L E+ L+ N + A
Sbjct: 185 SSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLAS 241
Query: 132 LQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L NLT L + N++S PL ++ L EL L NQ+ P L L +L + L+ N
Sbjct: 242 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297
Query: 192 NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ 251
P S NLKNLT + +N++ P + + TKL RL + S +S
Sbjct: 298 QLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-----SDVSS 348
Query: 252 LKNLTEL--------RISDL 263
L NLT + +ISDL
Sbjct: 349 LANLTNINWLSAGHNQISDL 368
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDL 354
EY+ ++T + + S NQLT P L+NL K+ I + NN ++ P LT+ L L
Sbjct: 65 EYLNNLTQI---NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119
Query: 355 SYNNFTESSP 364
N T+ P
Sbjct: 120 FNNQITDIDP 129
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 123/291 (42%), Gaps = 61/291 (20%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE---- 152
L + P NLT L ++ ++ N P A L NLT L + N+++ PL+
Sbjct: 75 LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTN 130
Query: 153 ----------IGDISTLEELV-LED----NQLVGPLPENLGNLKSLRRILLSSNNFTG-S 196
I DIS L L L+ NQ+ P L NL +L R+ +SSN + S
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDIS 188
Query: 197 IPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLT 256
+ NL++L S++T +G T LD L L G L+ T++ L NLT
Sbjct: 189 VLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI--GTLASLTNLT 241
Query: 257 ELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGP 316
+L +++ S+ L + K+ L L I+ P + +T L L+L+ NQL
Sbjct: 242 DLDLAN--NQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 297
Query: 317 VPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDLSYNNFTESSPATC 367
P + NLK + Y L L +NN ++ SP +
Sbjct: 298 SP--ISNLKNLTY----------------------LTLYFNNISDISPVSS 324
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 156 ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGS 215
++ L ++ +NQL P L NL L IL+++N P NL NLT + +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 216 NLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQD 275
+T P + N T L+RL+L ++ S IS L LT L+ + + L +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDLKPLAN 170
Query: 276 MKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+ +ERL D++ K+ D+S +L L ++ + TNN
Sbjct: 171 LTTLERL----------------DISSNKVSDIS----------VLAKLTNLESLIATNN 204
Query: 336 SLSGTLPDWILTSEKNLDLSYNNFTE 361
+S P ILT+ L L+ N +
Sbjct: 205 QISDITPLGILTNLDELSLNGNQLKD 230
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 80 SNNTVCHVTVILLKGFNLAGVIPEE--------FGNLTFLQEVDLSRNYFNGSLPKSFAR 131
S+N V ++V L K NL +I G LT L E+ L+ N + A
Sbjct: 180 SSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLAS 236
Query: 132 LQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L NLT L + N++S PL ++ L EL L NQ+ P L L +L + L+ N
Sbjct: 237 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Query: 192 NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ 251
P S NLKNLT + +N++ P + + TKL RL + S +S
Sbjct: 293 QLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-----SDVSS 343
Query: 252 LKNLTEL--------RISDL 263
L NLT + +ISDL
Sbjct: 344 LANLTNINWLSAGHNQISDL 363
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDL 354
EY+ ++T + + S NQLT P L+NL K+ I + NN ++ P LT+ L L
Sbjct: 60 EYLNNLTQI---NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 355 SYNNFTESSP 364
N T+ P
Sbjct: 115 FNNQITDIDP 124
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V E +EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL 133
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAV--IAVK--QLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
+GEG FG V +G L DG +AVK +L + S++ EF++E + H N+++L
Sbjct: 42 LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRL 101
Query: 721 YGCCIE 726
G CIE
Sbjct: 102 LGVCIE 107
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 123/291 (42%), Gaps = 61/291 (20%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE---- 152
L + P NLT L ++ ++ N P A L NLT L + N+++ PL+
Sbjct: 75 LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTN 130
Query: 153 ----------IGDISTLEELV-LED----NQLVGPLPENLGNLKSLRRILLSSNNFTG-S 196
I DIS L L L+ NQ+ P L NL +L R+ +SSN + S
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDIS 188
Query: 197 IPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLT 256
+ NL++L S++T +G T LD L L G L+ T++ L NLT
Sbjct: 189 VLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI--GTLASLTNLT 241
Query: 257 ELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGP 316
+L +++ S+ L + K+ L L I+ P + +T L L+L+ NQL
Sbjct: 242 DLDLAN--NQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 297
Query: 317 VPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDLSYNNFTESSPATC 367
P + NLK + Y L L +NN ++ SP +
Sbjct: 298 SP--ISNLKNLTY----------------------LTLYFNNISDISPVSS 324
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 156 ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGS 215
++ L ++ +NQL P L NL L IL+++N P NL NLT + +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 216 NLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQD 275
+T P + N T L+RL+L ++ S IS L LT L+ + + L +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDLKPLAN 170
Query: 276 MKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+ +ERL D++ K+ D+S +L L ++ + TNN
Sbjct: 171 LTTLERL----------------DISSNKVSDIS----------VLAKLTNLESLIATNN 204
Query: 336 SLSGTLPDWILTSEKNLDLSYNNFTE 361
+S P ILT+ L L+ N +
Sbjct: 205 QISDITPLGILTNLDELSLNGNQLKD 230
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 80 SNNTVCHVTVILLKGFNLAGVIPEE--------FGNLTFLQEVDLSRNYFNGSLPKSFAR 131
S+N V ++V L K NL +I G LT L E+ L+ N + A
Sbjct: 180 SSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLAS 236
Query: 132 LQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L NLT L + N++S PL ++ L EL L NQ+ P L L +L + L+ N
Sbjct: 237 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Query: 192 NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ 251
P S NLKNLT + +N++ P + + TKL RL + S +S
Sbjct: 293 QLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV-----SDVSS 343
Query: 252 LKNLTEL--------RISDL 263
L NLT + +ISDL
Sbjct: 344 LANLTNINWLSAGHNQISDL 363
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDL 354
EY+ ++T + + S NQLT P L+NL K+ I + NN ++ P LT+ L L
Sbjct: 60 EYLNNLTQI---NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 355 SYNNFTESSP 364
N T+ P
Sbjct: 115 FNNQITDIDP 124
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 123/291 (42%), Gaps = 61/291 (20%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLE---- 152
L + P NLT L ++ ++ N P A L NLT L + N+++ PL+
Sbjct: 79 LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTN 134
Query: 153 ----------IGDISTLEELV-LED----NQLVGPLPENLGNLKSLRRILLSSNNFTG-S 196
I DIS L L L+ NQ+ P L NL +L R+ +SSN + S
Sbjct: 135 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDIS 192
Query: 197 IPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLT 256
+ NL++L S++T +G T LD L L G L+ T++ L NLT
Sbjct: 193 VLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI--GTLASLTNLT 245
Query: 257 ELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGP 316
+L +++ S+ L + K+ L L I+ P + +T L L+L+ NQL
Sbjct: 246 DLDLAN--NQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 301
Query: 317 VPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDLSYNNFTESSPATC 367
P + NLK + Y L L +NN ++ SP +
Sbjct: 302 SP--ISNLKNLTY----------------------LTLYFNNISDISPVSS 328
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 37/206 (17%)
Query: 156 ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGS 215
++ L ++ +NQL P L NL L IL+++N P NL NLT + +
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 216 NLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQD 275
+T P + N T L+RL+L ++ S IS L LT L+ + L +
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDLKPLAN 174
Query: 276 MKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+ +ERL D++ K+ D+S +L L ++ + TNN
Sbjct: 175 LTTLERL----------------DISSNKVSDIS----------VLAKLTNLESLIATNN 208
Query: 336 SLSGTLPDWILTSEKNLDLSYNNFTE 361
+S P ILT+ L L+ N +
Sbjct: 209 QISDITPLGILTNLDELSLNGNQLKD 234
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 80 SNNTVCHVTVILLKGFNLAGVIPEE--------FGNLTFLQEVDLSRNYFNGSLPKSFAR 131
S+N V ++V L K NL +I G LT L E+ L+ N + A
Sbjct: 184 SSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLAS 240
Query: 132 LQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L NLT L + N++S PL ++ L EL L NQ+ P L L +L + L+ N
Sbjct: 241 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 296
Query: 192 NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQ 251
P S NLKNLT + +N++ P + + TKL RL + S +S
Sbjct: 297 QLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV-----SDVSS 347
Query: 252 LKNLTEL--------RISDL 263
L NLT + +ISDL
Sbjct: 348 LANLTNINWLSAGHNQISDL 367
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNLDL 354
EY+ ++T + + S NQLT P L+NL K+ I + NN ++ P LT+ L L
Sbjct: 64 EYLNNLTQI---NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 118
Query: 355 SYNNFTESSP 364
N T+ P
Sbjct: 119 FNNQITDIDP 128
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 33 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 90
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V E +EN SL
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL 133
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLS----DGAVIAVKQLS-SKSKQGN 699
QT + +++ A + D +G G FG V G L +A+K L +++
Sbjct: 4 QTVHEFAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 61
Query: 700 REFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
R+F+ E ++ H N+++L G + +++V E +EN SL
Sbjct: 62 RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL 104
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 667 IGE-GGFGPVYKGTLSDGAVIAV-KQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
IGE G FG VYK + +V+A K + +KS++ +++ EI ++++ H N+VKL
Sbjct: 17 IGELGDFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF 76
Query: 725 IEGNQLLLVYEY 736
N L ++ E+
Sbjct: 77 YYENNLWILIEF 88
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 660 NFDAANKIGEGGFGPVYKG-TLSDGAVIAVKQLSSKS--KQGNREFV-NEIGMISALQHQ 715
+F N +G+G F VY+ ++ G +A+K + K+ K G + V NE+ + L+H
Sbjct: 12 DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHP 71
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++++LY + N + LV E N + R L
Sbjct: 72 SILELYNYFEDSNYVYLVLEMCHNGEMNRYL 102
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 89 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 149 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 193
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
++G G FG V+ GT + +A+K L + F+ E ++ L+H LV+LY
Sbjct: 15 KRLGNGQFGEVWMGTWNGNTKVAIKTLKPGT-MSPESFLEEAQIMKKLKHDKLVQLYAVV 73
Query: 725 IEGNQLLLVYEYLENNSL 742
E + +V EY+ SL
Sbjct: 74 SE-EPIYIVTEYMNKGSL 90
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 667 IGEGGFGPVYKGTLSD--------GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLV 718
+G+G F ++KG + + +K L + + F M+S L H++LV
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
Query: 719 KLYGCCIEGNQLLLVYEYLENNSLARALFGN 749
YG C+ G++ +LV E+++ SL L N
Sbjct: 76 LNYGVCVCGDENILVQEFVKFGSLDTYLKKN 106
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 30 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 89
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 90 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 134
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 35 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 94
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 95 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 139
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 667 IGEGGFGPVYKGT-LSDGAVI----AVKQLSSKS-KQGNREFVNEIGMISALQHQNLVKL 720
+G G FG VYKG + +G + A+K L+ + + N EF++E +++++ H +LV+L
Sbjct: 23 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 82
Query: 721 YGCCI 725
G C+
Sbjct: 83 LGVCL 87
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 32 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 91
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ EY +L L + Y++ ++
Sbjct: 92 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 136
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 131/329 (39%), Gaps = 47/329 (14%)
Query: 84 VCHVTV--ILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLIL 141
+C ++V I L+ + F + LQE+DL+ + LP L L KL++
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLS 309
Query: 142 GNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPEN-LGNLKSLRRILLSSNNFTGS--IP 198
N+ + + +L L ++ N L L NL++LR + LS ++ S
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 199 ESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTEL 258
NL +L + + +L+ LDL T L+ + S +NL L
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK--VKDAQSPFQNLHLL 427
Query: 259 RISDLKGS----------------------SSSFP--------NLQDMKKMERLILRNCL 288
++ +L S + FP +LQ + ++E L+L C
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 289 ITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDW--IL 346
++ + + +DLS N+LT L +LK I Y+ L +N +S LP IL
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546
Query: 347 TSEKNLDLSYNNFTESSPATCRESRVNIL 375
+ ++ ++L N P C S + L
Sbjct: 547 SQQRTINLRQN------PLDCTCSNIYFL 569
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 643 DLQTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG- 698
D+ T +FT+ ++F+ +G+G FG VY ++A+K L S K+G
Sbjct: 14 DILTRHFTI-------DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGV 66
Query: 699 NREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+ EI + + L H N+++LY + ++ L+ EY L + L
Sbjct: 67 EHQLRREIEIQAHLHHPNILRLYNYFYDRRRIYLILEYAPRGELYKEL 114
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 667 IGEGGFGPVYKGT-LSDGAVI----AVKQLSSKS-KQGNREFVNEIGMISALQHQNLVKL 720
+G G FG VYKG + +G + A+K L+ + + N EF++E +++++ H +LV+L
Sbjct: 46 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 105
Query: 721 YGCCI 725
G C+
Sbjct: 106 LGVCL 110
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
++ KIGEG +G V+K + ++A+K+ L + + EI ++ L+H+
Sbjct: 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENN 740
N+V+L+ +L LV+E+ + +
Sbjct: 62 NIVRLHDVLHSDKKLTLVFEFCDQD 86
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 667 IGEGGFG--------PVYKGTLSDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNL 717
+GEG FG P GT G ++AVK L + + +R + EI ++ L H+++
Sbjct: 39 LGEGHFGKVSLYCYDPTNDGT---GEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHI 95
Query: 718 VKLYGCCIEGN--QLLLVYEYLENNSLARALFGNAI 751
+K GCC + L LV EY+ SL L ++I
Sbjct: 96 IKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSI 131
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL-----SDGAV-IAVKQLSSKSKQGNRE-FVNEIGMISA 711
N +G G FG V + T SD A+ +AVK L + RE ++E+ ++S
Sbjct: 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L H N+V L G C G L++ EY
Sbjct: 83 LGNHMNIVNLLGACTIGGPTLVITEY 108
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
+++G+G FG V L D GA++AVKQL R+F EI ++ AL +VK
Sbjct: 16 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVK 75
Query: 720 LYGCCI-EGNQ-LLLVYEYLENNSL 742
G G Q L LV EYL + L
Sbjct: 76 YRGVSYGPGRQSLRLVMEYLPSGCL 100
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQ--LSSKSKQGNREFVNEIGMISALQHQ 715
++ KIGEG +G V+K + ++A+K+ L + + EI ++ L+H+
Sbjct: 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61
Query: 716 NLVKLYGCCIEGNQLLLVYEYLENN 740
N+V+L+ +L LV+E+ + +
Sbjct: 62 NIVRLHDVLHSDKKLTLVFEFCDQD 86
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 21/120 (17%)
Query: 656 AATNNFDAANKIGEGGFGPV---YKGTLSDGAVIAV---KQLSSKSKQGNREFVNEIGMI 709
A N+ +GEG FG V Y T + + K L+ QG E EI +
Sbjct: 5 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIE--REISYL 62
Query: 710 SALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL-------------ARALFGNAITKITY 756
L+H +++KLY +++++V EY N AR F I+ + Y
Sbjct: 63 RLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEY 122
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 21/120 (17%)
Query: 656 AATNNFDAANKIGEGGFGPV---YKGTLSDGAVIAV---KQLSSKSKQGNREFVNEIGMI 709
A N+ +GEG FG V Y T + + K L+ QG E EI +
Sbjct: 1 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIE--REISYL 58
Query: 710 SALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL-------------ARALFGNAITKITY 756
L+H +++KLY +++++V EY N AR F I+ + Y
Sbjct: 59 RLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEY 118
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL-----SDGAV-IAVKQLSSKSKQGNRE-FVNEIGMISA 711
N +G G FG V + T SD A+ +AVK L + RE ++E+ ++S
Sbjct: 39 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 98
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L H N+V L G C G L++ EY
Sbjct: 99 LGNHMNIVNLLGACTIGGPTLVITEY 124
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNE--IGMISALQHQN 716
+N IG G +G VYKG+L D +AVK S ++Q F+NE I + ++H N
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQN---FINEKNIYRVPLMEHDN 68
Query: 717 LVKLY----GCCIEGN-QLLLVYEYLENNSLARAL 746
+ + +G + LLV EY N SL + L
Sbjct: 69 IARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL 103
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
+++G+G FG V L D GA++AVKQL R+F EI ++ AL +VK
Sbjct: 17 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVK 76
Query: 720 LYGCCI-EGNQ-LLLVYEYLENNSL 742
G G Q L LV EYL + L
Sbjct: 77 YRGVSYGPGRQSLRLVMEYLPSGCL 101
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 21/120 (17%)
Query: 656 AATNNFDAANKIGEGGFGPV---YKGTLSDGAVIAV---KQLSSKSKQGNREFVNEIGMI 709
A N+ +GEG FG V Y T + + K L+ QG E EI +
Sbjct: 11 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIE--REISYL 68
Query: 710 SALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL-------------ARALFGNAITKITY 756
L+H +++KLY +++++V EY N AR F I+ + Y
Sbjct: 69 RLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEY 128
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
+++G+G FG V L D GA++AVKQL R+F EI ++ AL +VK
Sbjct: 29 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVK 88
Query: 720 LYGCCI-EGNQ-LLLVYEYLENNSL 742
G G Q L LV EYL + L
Sbjct: 89 YRGVSYGPGRQSLRLVMEYLPSGCL 113
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVL 164
F N + LQ +DLSR K++ L +L+ L++ GN + P +++LE LV
Sbjct: 47 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 106
Query: 165 EDNQLVGPLPENLGNLKSLRRILLSSNNFTGS--IPESYGNLKNLTE 209
+ +L +G L +L+++ + ++NF S +P + NL NL
Sbjct: 107 VETKLASLESFPIGQLITLKKLNV-AHNFIHSCKLPAYFSNLTNLVH 152
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 230 KLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLK-GSSSSFP--NLQDMKKMERLILRN 286
L L L G ++ P + S L +L L + K S SFP L +KK+ + N
Sbjct: 76 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN--VAHN 133
Query: 287 CLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
+ + ++P Y ++T+L +DLS+N + LQ L++
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 173
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 649 FTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR- 700
F + + A + ++G+G FG VY+G ++ G V +A+K ++ + R
Sbjct: 6 FVPDEWEVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERI 64
Query: 701 EFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
EF+NE ++ ++V+L G +G L++ E + L L
Sbjct: 65 EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 110
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL-----SDGAV-IAVKQLSSKSKQGNRE-FVNEIGMISA 711
N +G G FG V + T SD A+ +AVK L + RE ++E+ ++S
Sbjct: 46 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 105
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L H N+V L G C G L++ EY
Sbjct: 106 LGNHMNIVNLLGACTIGGPTLVITEY 131
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL-----SDGAV-IAVKQLSSKSKQGNRE-FVNEIGMISA 711
N +G G FG V + T SD A+ +AVK L + RE ++E+ ++S
Sbjct: 41 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 100
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L H N+V L G C G L++ EY
Sbjct: 101 LGNHMNIVNLLGACTIGGPTLVITEY 126
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 659 NNFDAANKIGEGGFGPVYKGTL-----SDGAV-IAVKQLSSKSKQGNRE-FVNEIGMISA 711
N +G G FG V + T SD A+ +AVK L + RE ++E+ ++S
Sbjct: 46 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 105
Query: 712 L-QHQNLVKLYGCCIEGNQLLLVYEY 736
L H N+V L G C G L++ EY
Sbjct: 106 LGNHMNIVNLLGACTIGGPTLVITEY 131
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 667 IGEGGFGPVYKGTLSD--------GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLV 718
+G+G F ++KG + + +K L + + F M+S L H++LV
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
Query: 719 KLYGCCIEGNQLLLVYEYLENNSLARALFGN 749
YG C G++ +LV E+++ SL L N
Sbjct: 76 LNYGVCFCGDENILVQEFVKFGSLDTYLKKN 106
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 667 IGEGGFG--------PVYKGTLSDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNL 717
+GEG FG P GT G ++AVK L + +R + EI ++ L H+++
Sbjct: 22 LGEGHFGKVSLYCYDPTNDGT---GEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHI 78
Query: 718 VKLYGCCIEGNQ--LLLVYEYLENNSLARALFGNAI 751
+K GCC + + L LV EY+ SL L ++I
Sbjct: 79 IKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSI 114
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 665 NKIGEGGFGPVYKGTL-SDGAVIAVKQLSSK-SKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G FG V+ G L +D ++AVK +F+ E ++ H N+V+L G
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
Query: 723 CCIEGNQLLLVYEYLE 738
C + + +V E ++
Sbjct: 180 VCTQKQPIYIVMELVQ 195
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVL 164
F N + LQ +DLSR K++ L +L+ L++ GN + P +++LE LV
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 165 EDNQLVGPLPENLGNLKSLRRILLSSNNFTGS--IPESYGNLKNLTE 209
+ +L +G L +L+++ + ++NF S +P + NL NL
Sbjct: 112 VETKLASLESFPIGQLITLKKLNV-AHNFIHSCKLPAYFSNLTNLVH 157
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 230 KLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLK-GSSSSFP--NLQDMKKMERLILRN 286
L L L G ++ P + S L +L L + K S SFP L +KK+ + N
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN--VAHN 138
Query: 287 CLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
+ + ++P Y ++T+L +DLS+N + LQ L++
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 5/184 (2%)
Query: 103 EEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEE 161
+ F +L L+ + LS+N +F L +L L + NRL+ ++P + + +S L E
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRE 111
Query: 162 LVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPE-SYGNLKNLTEFRIDGSNLTGR 220
L L +N + + SLRR+ L I E ++ L NL + NL
Sbjct: 112 LWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD- 170
Query: 221 IPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKME 280
IPN +L+ L+L G L+ P + L +L +L + + ++ D+K +E
Sbjct: 171 IPNLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 281 RLIL 284
L L
Sbjct: 230 ELNL 233
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 21/120 (17%)
Query: 656 AATNNFDAANKIGEGGFGPV---YKGTLSDGAVIAV---KQLSSKSKQGNREFVNEIGMI 709
A N+ +GEG FG V Y T + + K L+ QG E EI +
Sbjct: 10 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIE--REISYL 67
Query: 710 SALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL-------------ARALFGNAITKITY 756
L+H +++KLY +++++V EY N AR F I+ + Y
Sbjct: 68 RLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEY 127
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 667 IGEGGFG--------PVYKGTLSDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNL 717
+GEG FG P GT G ++AVK L + +R + EI ++ L H+++
Sbjct: 22 LGEGHFGKVSLYCYDPTNDGT---GEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHI 78
Query: 718 VKLYGCCIEGNQ--LLLVYEYLENNSLARALFGNAI 751
+K GCC + + L LV EY+ SL L ++I
Sbjct: 79 IKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSI 114
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 665 NKIGEGGFGPVYKGTL-SDGAVIAVKQLSSK-SKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G FG V+ G L +D ++AVK +F+ E ++ H N+V+L G
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
Query: 723 CCIEGNQLLLVYEYLE 738
C + + +V E ++
Sbjct: 180 VCTQKQPIYIVMELVQ 195
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
K+G G FG V+ T + +AVK + S F+ E ++ LQH LVKL+
Sbjct: 21 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHA-V 78
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ E++ SL
Sbjct: 79 VTKEPIYIITEFMAKGSL 96
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISALQH 714
+FD +G+G FG VY ++A+K L + K G + E+ + S L+H
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
N+++LYG + ++ L+ EY ++ R L
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTVYREL 103
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 659 NNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISALQH 714
+FD +G+G FG VY ++A+K L + K G + E+ + S L+H
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
N+++LYG + ++ L+ EY ++ R L
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTVYREL 103
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIG+G G VY ++ G +A++Q++ + + +NEI ++ ++ N+V
Sbjct: 27 KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 86
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V EYL SL
Sbjct: 87 LVGDELWVVMEYLAGGSL 104
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 107 NLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLED 166
+L+ LQ ++S N F LT+L + GN L+ +P EI ++S L L L
Sbjct: 230 DLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279
Query: 167 NQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNL 217
N+L LP LG+ L+ N T ++P +GNL NL ++G+ L
Sbjct: 280 NRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 279 MERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLS 338
+ RL L +T +P I+++++L++LDLS N+LT +P L + ++ Y + +N ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 339 GTLP 342
TLP
Sbjct: 307 -TLP 309
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 87 VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLS 146
+T + L G +L +P E NL+ L+ +DLS N SLP L N ++
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 147 GSIPLEIGDISTLEELVLEDNQL 169
++P E G++ L+ L +E N L
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGNPL 328
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 667 IGEGGFGPVYKGTLSD-----GAVIAVKQLSSKSKQGNR--EFVNEIGMISALQHQNLVK 719
+GEG FG V G +AVK L +S GN + EI ++ L H+N+VK
Sbjct: 29 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG-GNHIADLKKEIEILRNLYHENIVK 87
Query: 720 LYGCCIE--GNQLLLVYEYLENNSLARALFGN 749
G C E GN + L+ E+L + SL L N
Sbjct: 88 YKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN 119
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIG+G G VY ++ G +A++Q++ + + +NEI ++ ++ N+V
Sbjct: 27 KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 86
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V EYL SL
Sbjct: 87 LVGDELWVVMEYLAGGSL 104
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 647 GYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREF 702
G+ ++ + A +F+ +G+G FG VY ++A+K L + K G +
Sbjct: 1 GHXESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQL 60
Query: 703 VNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
E+ + S L+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 61 RREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIG+G G VY ++ G +A++Q++ + + +NEI ++ ++ N+V
Sbjct: 28 KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 87
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V EYL SL
Sbjct: 88 LVGDELWVVMEYLAGGSL 105
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIG+G G VY ++ G +A++Q++ + + +NEI ++ ++ N+V
Sbjct: 27 KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 86
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V EYL SL
Sbjct: 87 LVGDELWVVMEYLAGGSL 104
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
K+G G FG V+ T + +AVK + S F+ E ++ LQH LVKL+
Sbjct: 188 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHA-V 245
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ E++ SL
Sbjct: 246 VTKEPIYIITEFMAKGSL 263
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 666 KIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
KIG+G G VY ++ G +A++Q++ + + +NEI ++ ++ N+V
Sbjct: 28 KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 87
Query: 725 IEGNQLLLVYEYLENNSL 742
+ G++L +V EYL SL
Sbjct: 88 LVGDELWVVMEYLAGGSL 105
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 667 IGEGGFGPVYKGTLSD-----GAVIAVKQLSSKSKQGNR--EFVNEIGMISALQHQNLVK 719
+GEG FG V G +AVK L +S GN + EI ++ L H+N+VK
Sbjct: 17 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG-GNHIADLKKEIEILRNLYHENIVK 75
Query: 720 LYGCCIE--GNQLLLVYEYLENNSLARALFGN 749
G C E GN + L+ E+L + SL L N
Sbjct: 76 YKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN 107
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCC 724
K+G G FG V+ T + +AVK + S F+ E ++ LQH LVKL+
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHA-V 251
Query: 725 IEGNQLLLVYEYLENNSL 742
+ + ++ E++ SL
Sbjct: 252 VTKEPIYIITEFMAKGSL 269
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ Y +L L + Y++ ++
Sbjct: 103 IINLLGACTQDGPLYVIVAYASKGNLREYLRARRPPGMEYSYDIN 147
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 5/182 (2%)
Query: 103 EEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEE 161
+ F +L L+ + LS+N +F L +L L + NRL+ ++P + + +S L E
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRE 111
Query: 162 LVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPE-SYGNLKNLTEFRIDGSNLTGR 220
L L +N + + SLRR+ L I E ++ L NL + NL
Sbjct: 112 LWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD- 170
Query: 221 IPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKME 280
IPN +L+ L+L G L+ P + L +L +L + + ++ D+K +E
Sbjct: 171 IPNLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 281 RL 282
L
Sbjct: 230 EL 231
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 65 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 98
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 6 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 64
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 65 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 104
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 654 IKAATNNFDAANKIGEGGFGPVYK-GTLSDGAVIAVKQLS--SKSKQGNREFVNEIGMIS 710
+ + +++ IG G +G K SDG ++ K+L S ++ + V+E+ ++
Sbjct: 1 MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLR 60
Query: 711 ALQHQNLVKLYGCCIE--GNQLLLVYEYLENNSLARAL 746
L+H N+V+ Y I+ L +V EY E LA +
Sbjct: 61 ELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVI 98
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 8 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 66
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 67 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 106
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 8 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 66
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 67 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 106
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 27 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 86
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS L HQN+V+ G ++ ++ E + L L
Sbjct: 87 IISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 125
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 654 IKAATNNFDAANKIGEGGFGPVYK-GTLSDGAVIAVKQLS--SKSKQGNREFVNEIGMIS 710
+ + +++ IG G +G K SDG ++ K+L S ++ + V+E+ ++
Sbjct: 1 MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLR 60
Query: 711 ALQHQNLVKLYGCCIE--GNQLLLVYEYLENNSLARAL 746
L+H N+V+ Y I+ L +V EY E LA +
Sbjct: 61 ELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVI 98
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 70 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 103
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 14 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 72
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 73 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 112
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 15 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 73
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 74 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 113
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ L G C + L ++ EY +L L
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYL 132
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 21 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 79
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 80 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 119
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 665 NKIGEGGFGPV---YKGTLSD--GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
+++G+G FG V L D GA++AVKQL R+F EI ++ AL +VK
Sbjct: 13 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVK 72
Query: 720 LYGCCIEGN--QLLLVYEYLENNSL 742
G +L LV EYL + L
Sbjct: 73 YRGVSYGPGRPELRLVMEYLPSGCL 97
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 654 IKAATNNFDAANKIGEGGFGPVYK-GTLSDGAVIAVKQLS--SKSKQGNREFVNEIGMIS 710
+ + +++ IG G +G K SDG ++ K+L S ++ + V+E+ ++
Sbjct: 1 MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLR 60
Query: 711 ALQHQNLVKLYGCCIE--GNQLLLVYEYLENNSLARAL 746
L+H N+V+ Y I+ L +V EY E LA +
Sbjct: 61 ELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVI 98
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 14 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 72
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 73 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 112
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 15 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 73
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 74 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 113
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPVYKGTLSD------GAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNL 717
++G+G FG VY+G D +AVK ++ + R EF+NE ++ ++
Sbjct: 23 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSLARAL 746
V+L G +G L+V E + + L L
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYL 111
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 21 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 79
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 80 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 119
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 11 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 69
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 70 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 109
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPVYKGTLSD------GAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNL 717
++G+G FG VY+G D +AVK ++ + R EF+NE ++ ++
Sbjct: 20 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 79
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSLARAL 746
V+L G +G L+V E + + L L
Sbjct: 80 VRLLGVVSKGQPTLVVMELMAHGDLKSYL 108
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPVYKGTLSD------GAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNL 717
++G+G FG VY+G D +AVK ++ + R EF+NE ++ ++
Sbjct: 23 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSLARAL 746
V+L G +G L+V E + + L L
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYL 111
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPVYKGTLSD------GAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNL 717
++G+G FG VY+G D +AVK ++ + R EF+NE ++ ++
Sbjct: 23 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSLARAL 746
V+L G +G L+V E + + L L
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYL 111
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY + ++A+K L + K G + E+ + S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 66 RHPNILRLYGYFHDSTRVYLILEYAPLGTVYREL 99
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPVYKGTLSD------GAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNL 717
++G+G FG VY+G D +AVK ++ + R EF+NE ++ ++
Sbjct: 23 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSLARAL 746
V+L G +G L+V E + + L L
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYL 111
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 41 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 100
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS L HQN+V+ G ++ ++ E + L L
Sbjct: 101 IISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 139
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 666 KIGEGGFGPVYKGTLSD------GAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNLV 718
++G+G FG VY+G D +AVK ++ + R EF+NE ++ ++V
Sbjct: 24 ELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVV 83
Query: 719 KLYGCCIEGNQLLLVYEYLENNSLARAL 746
+L G +G L+V E + + L L
Sbjct: 84 RLLGVVSKGQPTLVVMELMAHGDLKSYL 111
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 128 SFARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEELVLEDNQLVGPLPENL-GNLKSLRR 185
+ L NLT L++ GN+L S+P + D ++ L+ELVL +NQL LP+ + L +L
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 186 ILLSSNNFTGSIPES-YGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGP 244
+ L N S+P+ + L NLT +D + L T+L +L L L+
Sbjct: 138 LYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 245 IPSTISQLKNLTEL 258
+L +LT +
Sbjct: 197 PDGVFDRLTSLTHI 210
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 84 VCHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILG 142
+ ++T ++L G L + F LT L+E+ L N SLP F +L NLT L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 143 NRLSGSIPLEIGD-ISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNFTGSIPES 200
N+L S+P + D ++ L L L++NQL LPE + L L+++ L+ N S+P+
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQL-KSVPDG 199
Query: 201 -YGNLKNLTEF 210
+ L +LT
Sbjct: 200 VFDRLTSLTHI 210
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEEL 162
F LT L + L N SLPK F +L NLT+L + N+L S+P + D ++ L++L
Sbjct: 129 FDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQL 186
Query: 163 VLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L DNQL L SL I L +N
Sbjct: 187 SLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 204 LKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDL 263
L NLT + G+ L T L L L L+ +L NLT L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 264 KGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIED-MTDLKILDLSFNQLTGPVPGILQ 322
+ S + + RL L N + +PE + D +T LK L L+ NQL G+
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFD 202
Query: 323 NLKKIDYIFLTNN 335
L + +I+L NN
Sbjct: 203 RLTSLTHIWLLNN 215
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV-------IAVKQLSSKSKQGNR-EFVNEI 706
+ A + ++G+G FG VY+G ++ G V +A+K ++ + R EF+NE
Sbjct: 43 EVAREKITMSRELGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 101
Query: 707 GMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
++ ++V+L G +G L++ E + L L
Sbjct: 102 SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 141
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 666 KIGEGGFGPVYKGTLSD------GAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNLV 718
++G+G FG VY+G D +AVK ++ + R EF+NE ++ ++V
Sbjct: 25 ELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVV 84
Query: 719 KLYGCCIEGNQLLLVYEYLENNSLARAL 746
+L G +G L+V E + + L L
Sbjct: 85 RLLGVVSKGQPTLVVMELMAHGDLKSYL 112
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 63 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 96
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 646 TGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NRE 701
T + + K ++FD +G+G FG VY ++A+K L S K+G +
Sbjct: 1 TALAEMPKRKFTIDDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ 60
Query: 702 FVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
EI + S L+H N++++Y + ++ L+ E+ L + L
Sbjct: 61 LRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKEL 105
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 665 NKIGEGGFGPVYKGTLSD------GAVIAVKQLSSKSKQGNR-EFVNEIGMISALQHQNL 717
++G+G FG VY+G D +AVK ++ + R EF+NE ++ ++
Sbjct: 22 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 81
Query: 718 VKLYGCCIEGNQLLLVYEYLENNSLARAL 746
V+L G +G L+V E + + L L
Sbjct: 82 VRLLGVVSKGQPTLVVMELMAHGDLKSYL 110
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 68 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 101
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 68 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 101
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 646 TGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NRE 701
T + + K ++FD +G+G FG VY ++A+K L S K+G +
Sbjct: 1 TALAEMPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ 60
Query: 702 FVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
EI + S L+H N++++Y + ++ L+ E+ L + L
Sbjct: 61 LRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKEL 105
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L + + + + V+E+ M+ + +H+N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFSLH 761
++ L G C + L ++ Y +L L + Y++ ++
Sbjct: 103 IINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYSYDIN 147
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 646 TGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NRE 701
T + + K ++FD +G+G FG VY ++A+K L S K+G +
Sbjct: 2 TALAEMPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ 61
Query: 702 FVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
EI + S L+H N++++Y + ++ L+ E+ L + L
Sbjct: 62 LRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKEL 106
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 92 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 125
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTF 758
++ L G C + L ++ EY +L L + ++F
Sbjct: 96 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSF 137
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 25 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 84
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFS 759
++ L G C + L ++ EY +L L + Y+++
Sbjct: 85 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYN 127
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 56 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 115
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 116 GICLRSEGSP-LVVLPYMKHGDL 137
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 57 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 116
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 117 GICLRSEGSP-LVVLPYMKHGDL 138
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 29 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 88
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFS 759
++ L G C + L ++ EY +L L + Y+++
Sbjct: 89 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYN 131
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 92 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 125
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFS 759
++ L G C + L ++ EY +L L + Y+++
Sbjct: 96 IINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYN 138
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 98 GICLRSEGSP-LVVLPYMKHGDL 119
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY ++ R L
Sbjct: 83 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 116
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 43 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 102
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 103 GICLRSEGSP-LVVLPYMKHGDL 124
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 36 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 95
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 96 GICLRSEGSP-LVVLPYMKHGDL 117
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 98 GICLRSEGSP-LVVLPYMKHGDL 119
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 37 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 96
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 97 GICLRSEGSP-LVVLPYMKHGDL 118
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFS 759
++ L G C + L ++ EY +L L + Y+++
Sbjct: 96 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYN 138
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 39 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 98
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 99 GICLRSEGSP-LVVLPYMKHGDL 120
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 35 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 94
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 95 GICLRSEGSP-LVVLPYMKHGDL 116
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 98 GICLRSEGSP-LVVLPYMKHGDL 119
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 97 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 156
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 157 GICLRSEGSP-LVVLPYMKHGDL 178
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 667 IGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
+G+G +G VY G LS+ IA+K++ + + ++ EI + L+H+N+V+ G
Sbjct: 30 LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS 89
Query: 726 EGNQLLLVYEYLENNSLARAL 746
E + + E + SL+ L
Sbjct: 90 ENGFIKIFMEQVPGGSLSALL 110
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 39 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 98
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 99 GICLRSEGSP-LVVLPYMKHGDL 120
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 30 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 89
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 90 GICLRSEGSP-LVVLPYMKHGDL 111
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 667 IGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCI 725
+G+G +G VY G LS+ IA+K++ + + ++ EI + L+H+N+V+ G
Sbjct: 16 LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS 75
Query: 726 EGNQLLLVYEYLENNSLARAL 746
E + + E + SL+ L
Sbjct: 76 ENGFIKIFMEQVPGGSLSALL 96
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 28 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 87
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFS 759
++ L G C + L ++ EY +L L + Y+++
Sbjct: 88 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYN 130
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 98 GICLRSEGSP-LVVLPYMKHGDL 119
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 36 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 95
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 96 GICLRSEGSP-LVVLPYMKHGDL 117
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 33 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 92
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 93 GICLRSEGSP-LVVLPYMKHGDL 114
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 667 IGEGGFGPVYKGTL--SDGAVI--AVKQLSSKSKQGN-REFVNEIGMISALQHQNLVKLY 721
IG G FG VY GTL +DG I AVK L+ + G +F+ E ++ H N++ L
Sbjct: 37 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 96
Query: 722 GCCI--EGNQLLLVYEYLENNSL 742
G C+ EG+ L+V Y+++ L
Sbjct: 97 GICLRSEGSP-LVVLPYMKHGDL 118
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREFVNEIGMISAL 712
A +F+ +G+G FG VY ++A+K L + K G + E+ + S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+H N+++LYG + ++ L+ EY + + L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEEL 162
F LT L ++ LS+N SLP F +L LT L + N+L S+P + D ++ L+EL
Sbjct: 48 FDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL 105
Query: 163 VLEDNQLVGPLPENL-GNLKSLRRILLSSNNFTGSIPE 199
L+ NQL +P+ + L SL++I L +N + S P
Sbjct: 106 ALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 77 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFS 759
++ L G C + L ++ EY +L L + Y+++
Sbjct: 137 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYN 179
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 647 GYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGA-VIAVKQL--SSKSKQG-NREF 702
G ++ + A +F+ +G+G FG VY ++A+K L + K G +
Sbjct: 1 GAMESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQL 60
Query: 703 VNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
E+ + S L+H N+++LYG + ++ L+ EY + + L
Sbjct: 61 RREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 667 IGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIE 726
IG+G FG V G G +AVK + K+ + F+ E +++ L+H NLV+L G +E
Sbjct: 14 IGKGEFGDVMLGDYR-GNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 70
Query: 727 GN-QLLLVYEYLENNSLARAL 746
L +V EY+ SL L
Sbjct: 71 EKGGLYIVTEYMAKGSLVDYL 91
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 33 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 92
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS HQN+V+ G ++ ++ E + L L
Sbjct: 93 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 131
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 667 IGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIE 726
IG+G FG V G G +AVK + K+ + F+ E +++ L+H NLV+L G +E
Sbjct: 29 IGKGEFGDVMLGDYR-GNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 85
Query: 727 GN-QLLLVYEYLENNSLARAL 746
L +V EY+ SL L
Sbjct: 86 EKGGLYIVTEYMAKGSLVDYL 106
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 667 IGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIE 726
IG+G FG V G G +AVK + K+ + F+ E +++ L+H NLV+L G +E
Sbjct: 201 IGKGEFGDVMLGDYR-GNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 257
Query: 727 GN-QLLLVYEYLENNSLARAL 746
L +V EY+ SL L
Sbjct: 258 EKGGLYIVTEYMAKGSLVDYL 278
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 27 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 86
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS HQN+V+ G ++ ++ E + L L
Sbjct: 87 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 125
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 27 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 86
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS HQN+V+ G ++ ++ E + L L
Sbjct: 87 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 125
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 667 IGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIE 726
IG+G FG V G G +AVK + K+ + F+ E +++ L+H NLV+L G +E
Sbjct: 20 IGKGEFGDVMLGDYR-GNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLLGVIVE 76
Query: 727 GN-QLLLVYEYLENNSL 742
L +V EY+ SL
Sbjct: 77 EKGGLYIVTEYMAKGSL 93
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSS-KSKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 41 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEAL 100
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS HQN+V+ G ++ ++ E + L L
Sbjct: 101 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 139
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 41 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 100
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS HQN+V+ G ++ ++ E + L L
Sbjct: 101 IISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFL 139
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 43 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 102
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS HQN+V+ G ++ ++ E + L L
Sbjct: 103 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 141
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 26 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 85
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+IS HQN+V+ G ++ ++ E + L
Sbjct: 86 IISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDL 120
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 67 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 126
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS HQN+V+ G ++ ++ E + L L
Sbjct: 127 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 165
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 18 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 77
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+IS HQN+V+ G ++ ++ E + L
Sbjct: 78 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDL 112
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 44 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 103
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL 746
+IS HQN+V+ G ++ ++ E + L L
Sbjct: 104 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 142
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 21 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 80
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFS 759
++ L G C + L ++ EY +L L + Y ++
Sbjct: 81 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYN 123
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 26 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 85
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+IS HQN+V+ G ++ ++ E + L
Sbjct: 86 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDL 120
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 667 IGEGGFGPVY--------KGTLSDGAVIAVKQLSSKSKQGN-REFVNEIGMISAL-QHQN 716
+GEG FG V K + +AVK L S + + + + ++E+ M+ + +H+N
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 717 LVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYTFS 759
++ L G C + L ++ EY +L L + Y ++
Sbjct: 96 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYN 138
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSK-SKQGNREFVNEIG 707
+ N +G G FG VY+G +S +AVK L S+Q +F+ E
Sbjct: 53 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 112
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+IS HQN+V+ G ++ ++ E + L
Sbjct: 113 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDL 147
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREF--VNEIGMISAL 712
A ++ +IGEG +G V+K + G +A+K++ ++ + + E+ ++ L
Sbjct: 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 68
Query: 713 ---QHQNLVKLYGCCI-----EGNQLLLVYEYLENN 740
+H N+V+L+ C +L LV+E+++ +
Sbjct: 69 ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQD 104
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 667 IGEGGFGPVYKGT-LSDGAVI----AVKQLSSKS-KQGNREFVNEIGMISALQHQNLVKL 720
+G G FG V+KG + +G I +K + KS +Q + + + I +L H ++V+L
Sbjct: 39 LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRL 98
Query: 721 YGCCIEGNQLLLVYEYLENNSL 742
G C G+ L LV +YL SL
Sbjct: 99 LGLC-PGSSLQLVTQYLPLGSL 119
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREF--VNEIGMISAL 712
A ++ +IGEG +G V+K + G +A+K++ ++ + + E+ ++ L
Sbjct: 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 68
Query: 713 ---QHQNLVKLYGCCI-----EGNQLLLVYEYLENN 740
+H N+V+L+ C +L LV+E+++ +
Sbjct: 69 ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQD 104
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREF--VNEIGMISAL 712
A ++ +IGEG +G V+K + G +A+K++ ++ + + E+ ++ L
Sbjct: 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 68
Query: 713 ---QHQNLVKLYGCCI-----EGNQLLLVYEYLENN 740
+H N+V+L+ C +L LV+E+++ +
Sbjct: 69 ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQD 104
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 665 NKIGEGGFGPVYKGTLSDGA----VIAVKQLSS---KSKQGNREFVNEIGMISALQHQNL 717
K+G+G FG V +G + +AVK L + +F+ E+ + +L H+NL
Sbjct: 18 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 77
Query: 718 VKLYGCCI 725
++LYG +
Sbjct: 78 IRLYGVVL 85
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 667 IGEGGFGPVYKGT-LSDGAVI----AVKQLSSKS-KQGNREFVNEIGMISALQHQNLVKL 720
+G G FG V+KG + +G I +K + KS +Q + + + I +L H ++V+L
Sbjct: 21 LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRL 80
Query: 721 YGCCIEGNQLLLVYEYLENNSL 742
G C G+ L LV +YL SL
Sbjct: 81 LGLC-PGSSLQLVTQYLPLGSL 101
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 665 NKIGEGGFGPVYKGTLSDGA----VIAVKQLSS---KSKQGNREFVNEIGMISALQHQNL 717
K+G+G FG V +G + +AVK L + +F+ E+ + +L H+NL
Sbjct: 14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 73
Query: 718 VKLYGCCI 725
++LYG +
Sbjct: 74 IRLYGVVL 81
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 665 NKIGEGGFGPVYKGTLSDGA----VIAVKQLSS---KSKQGNREFVNEIGMISALQHQNL 717
K+G+G FG V +G + +AVK L + +F+ E+ + +L H+NL
Sbjct: 14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 73
Query: 718 VKLYGCCI 725
++LYG +
Sbjct: 74 IRLYGVVL 81
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 665 NKIGEGGFGPVYKGTLSDGA----VIAVKQLSS---KSKQGNREFVNEIGMISALQHQNL 717
K+G+G FG V +G + +AVK L + +F+ E+ + +L H+NL
Sbjct: 14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 73
Query: 718 VKLYGCCI 725
++LYG +
Sbjct: 74 IRLYGVVL 81
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 665 NKIGEGGFGPVYKGTLSDGA----VIAVKQLSS---KSKQGNREFVNEIGMISALQHQNL 717
K+G+G FG V +G + +AVK L + +F+ E+ + +L H+NL
Sbjct: 24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 83
Query: 718 VKLYGCCI 725
++LYG +
Sbjct: 84 IRLYGVVL 91
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 665 NKIGEGGFGPVYKGTLSDGA----VIAVKQLSS---KSKQGNREFVNEIGMISALQHQNL 717
K+G+G FG V +G + +AVK L + +F+ E+ + +L H+NL
Sbjct: 24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 83
Query: 718 VKLYGCCI 725
++LYG +
Sbjct: 84 IRLYGVVL 91
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 665 NKIGEGGFGPVYKGTLSDGA----VIAVKQLSS---KSKQGNREFVNEIGMISALQHQNL 717
K+G+G FG V +G + +AVK L + +F+ E+ + +L H+NL
Sbjct: 18 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 77
Query: 718 VKLYGCCI 725
++LYG +
Sbjct: 78 IRLYGVVL 85
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 86 HVTVILLKGFNLAGVIPEE-FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
H T +LL L + + FG L L +++L RN G P +F ++ +L + N+
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 145 LSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNF 193
+ + L+ L L DNQ+ +P + +L SL + L+SN F
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 129 FARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILL 188
F RL +L KL + N+L+G P S ++EL L +N++ + L L+ + L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 189 SSNNFTGSIPESYGNLKNLTEFRIDGS--NLTGRIPNFIGNWTKLDRLDLQGTSLEGPIP 246
N + +P S+ +L +LT + + N + F W L + L G + P
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEW--LRKKSLNGGAARCGAP 166
Query: 247 STISQLKNLTELRISDLKGSS 267
S + ++ + +L S+ K SS
Sbjct: 167 SKVRDVQ-IKDLPHSEFKCSS 186
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 11/222 (4%)
Query: 148 SIPLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSN--NFTGSIPESYGNL 204
S+P G S+ L LE N+L LP + L L ++ LSSN +F G +S
Sbjct: 21 SVP--TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 205 KNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIP-STISQLKNLTELRISDL 263
+L + + + NF+G +L+ LD Q ++L+ S L+NL L IS
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 264 KGSSSSFPNLQDMKKMERLILR-NCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQ 322
+ + +E L + N +P+ ++ +L LDLS QL P
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 323 NLKKIDYIFLTNNSLSG--TLPDWILTSEKNLDLSYNNFTES 362
+L + + +++N+ T P L S + LD S N+ S
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 16 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 75
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 76 DNPHVCRLLGICLTSTVQLIM 96
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 19 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 78
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 79 DNPHVCRLLGICLTSTVQLIM 99
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 16 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 75
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 76 DNPHVCRLLGICLTSTVQLIM 96
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 19 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 78
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 79 DNPHVCRLLGICLTSTVQLIM 99
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 75 DNPHVCRLLGICLTSTVQLIM 95
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 77 DNPHVCRLLGICLTSTVQLIM 97
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 77
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 78 DNPHVCRLLGICLTSTVQLIM 98
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 77 DNPHVCRLLGICLTSTVQLIM 97
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 68
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 69 DNPHVCRLLGICL 81
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 75 DNPHVCRLLGICL 87
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 25 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 84
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 85 DNPHVCRLLGICL 97
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 77 DNPHVCRLLGICLTSTVQLIM 97
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 77
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 78 DNPHVCRLLGICL 90
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 12 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 71
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 72 DNPHVCRLLGICL 84
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 40 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 99
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 100 DNPHVCRLLGICL 112
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 75 DNPHVCRLLGICL 87
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 75 DNPHVCRLLGICL 87
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 77
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 78 DNPHVCRLLGICL 90
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 77
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 78 DNPHVCRLLGICL 90
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 21 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 80
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 81 DNPHVCRLLGICL 93
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 77 DNPHVCRLLGICL 89
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 660 NFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLV 718
+F IG GGFG V+K DG +K++ +++ R E+ ++ L H N+V
Sbjct: 12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLDHVNIV 67
Query: 719 KLYGC 723
GC
Sbjct: 68 HYNGC 72
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 78
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 29 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 79
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 76
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 77 DNPHVCRLLGICL 89
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 78
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 22 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 81
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 82 DNPHVCRLLGICL 94
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 78
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 41 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 91
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 75 DNPHVCRLLGICL 87
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 78
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 22 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 81
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 82 DNPHVCRLLGICL 94
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 47 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 97
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 36 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 86
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINAMLNH 64
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 90
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 90
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 32 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 82
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 33 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 83
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEIXINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREF--VNEIGM---IS 710
AT+ ++ +IG G +G VYK G +A+K + + + V E+ + +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 711 ALQHQNLVKLYGCCIEGN-----QLLLVYEYLENN 740
A +H N+V+L C ++ LV+E+++ +
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQD 96
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEIXINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREF--VNEIGM---IS 710
AT+ ++ +IG G +G VYK G +A+K + + + V E+ + +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 711 ALQHQNLVKLYGCCIEGN-----QLLLVYEYLENN 740
A +H N+V+L C ++ LV+E+++ +
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQD 96
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREF--VNEIGM---IS 710
AT+ ++ +IG G +G VYK G +A+K + + + V E+ + +
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 711 ALQHQNLVKLYGCCIEGN-----QLLLVYEYLENN 740
A +H N+V+L C ++ LV+E+++ +
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQD 96
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 56 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 106
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEIXINKMLNH 64
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 660 NFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLV 718
+F IG GGFG V+K DG ++++ +++ R E+ ++ L H N+V
Sbjct: 13 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRVKYNNEKAER----EVKALAKLDHVNIV 68
Query: 719 KLYGC 723
GC
Sbjct: 69 HYNGC 73
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 112
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 112
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 645 QTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVN 704
QT F L++ + IG+G FG VY G I + + ++ + F
Sbjct: 20 QTSIF-LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKR 78
Query: 705 EIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
E+ +H+N+V G C+ L ++ + +L
Sbjct: 79 EVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTL 116
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 138/298 (46%), Gaps = 35/298 (11%)
Query: 87 VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLS 146
+T +++ G +A + E+ LT L+ ++L+ N P + L LT L I N+++
Sbjct: 46 ITKLVVAGEKVASIQGIEY--LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT 101
Query: 147 GSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN-NFTGSIPESYGNLK 205
L+ +++ L EL L ++ + P L NL + L +N N + P S N
Sbjct: 102 DISALQ--NLTNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDLSPLS--NXT 155
Query: 206 NLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLE--GPIPST---------ISQLKN 254
L + S + P I N T L L L +E P+ S ++Q+ +
Sbjct: 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD 213
Query: 255 LTEL----RISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEY--IEDMTDLKILDL 308
+T + R++ LK ++ +L + + +L + T +I + ++D+T LK L++
Sbjct: 214 ITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLE-IGTNQISDINAVKDLTKLKXLNV 272
Query: 309 SFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWI--LTSEKNLDLSYNNFTESSP 364
NQ++ +L NL +++ +FL NN L + I LT+ L LS N+ T+ P
Sbjct: 273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 648 YFTLRQIKAATNNFDAANKIGEGGFGPV-YKGTLSDGAVIAVKQLSSKSKQGNREFVNEI 706
YF + ++ K+GEGGF V L DG A+K++ +Q E E
Sbjct: 18 YFQGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREA 77
Query: 707 GMISALQHQNLVKLYGCCI 725
M H N+++L C+
Sbjct: 78 DMHRLFNHPNILRLVAYCL 96
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 66 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 116
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 64 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 114
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 62
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 63 ENVVKFYGHRREGNIQYLFLEYCSGGEL 90
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 636 DKELRGLDLQTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSK 694
D R LD L ++ F+ +G G +G VYKG + G + A+K +
Sbjct: 5 DSPARSLD----EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT 60
Query: 695 SKQGNREFVNEIGMISAL-QHQNLVKLYGCCIEGN------QLLLVYEY 736
+ E EI M+ H+N+ YG I+ N QL LV E+
Sbjct: 61 GDE-EEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEF 108
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ + NR E+ ++ L H N+V+L
Sbjct: 107 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 157
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 28/117 (23%)
Query: 639 LRGLDLQTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQ 697
+ G DL + Y L+ +G GG G V+ +D +A+K++ Q
Sbjct: 4 IHGFDLGSRYMDLK-------------PLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQ 50
Query: 698 GNREFVNEIGMISALQHQNLVKLY--------------GCCIEGNQLLLVYEYLENN 740
+ + EI +I L H N+VK++ G E N + +V EY+E +
Sbjct: 51 SVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETD 107
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 34/332 (10%)
Query: 35 QTLQSIFRKLNFRNGQVNQTSCTEGSW---NVTIDDSNGSN----FTCDCTYSNNTVCHV 87
QT+ +F L N Q+N + W N +I + + +N T + T+S ++
Sbjct: 192 QTIGKLFALL-LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNL 250
Query: 88 TVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSG 147
T + L NL V F L L+ + L N P+SF L NL L +
Sbjct: 251 TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQ 310
Query: 148 SIPL----EIGDIS-----TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIP 198
S+ L I D S LE L ++DN + L SL+ + LS FT
Sbjct: 311 SVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT-FTSLQT 369
Query: 199 ESYGNLKNLTEFRIDGSNLT----GRIPNFIGNWT-KLDRLDLQGTSLEGPIPSTISQ-L 252
+ +L + NLT +I N +W +L LDL +E + + L
Sbjct: 370 LTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGL 429
Query: 253 KNLTELRISD---LKGSSSSF---PNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKIL 306
+N+ E+ +S L+ S+SSF P+LQ + + R+ L+N I+ P + +L IL
Sbjct: 430 RNIFEIYLSYNKYLQLSTSSFALVPSLQRLM-LRRVALKNVDIS---PSPFRPLRNLTIL 485
Query: 307 DLSFNQLTGPVPGILQNLKKIDYIFLTNNSLS 338
DLS N + +L+ L+ ++ + +N+L+
Sbjct: 486 DLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 665 NKIGEGGFG-PVYKGTLSDGAVIAVKQ-----LSSKSKQGNREFVNEIGMISALQHQNLV 718
KIGEG FG + + DG +K+ +SSK ++ +R E+ +++ ++H N+V
Sbjct: 30 QKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESR---REVAVLANMKHPNIV 86
Query: 719 KLYGCCIEGNQLLLVYEYLENNSLARAL 746
+ E L +V +Y E L + +
Sbjct: 87 QYRESFEENGSLYIVMDYCEGGDLFKRI 114
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 51 VNQTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVILLKGFNLAGVIP-------- 102
+ + S V D N + D + T+ H++ LL F+LA ++P
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 103 ---------EEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPL-E 152
+ G L L +DLS N SLP L LT L + NRL+ S+PL
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119
Query: 153 IGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGN-LKNLTEFR 211
+ + L+EL L+ N+L P L L ++ L++NN T +P N L+NL
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178
Query: 212 IDGSNLTGRIPNFIGN 227
+ ++L F G+
Sbjct: 179 LQENSLYTIPKGFFGS 194
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ NN TE
Sbjct: 151 EKLSLANNNLTE 162
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D + LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ N LT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG +G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 661 FDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVK 719
+D ++G G FG V++ + G V K +++ NEI +++ L H L+
Sbjct: 53 YDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLIN 112
Query: 720 LYGCCIEGNQLLLVYEYLENNSL 742
L+ + +++L+ E+L L
Sbjct: 113 LHDAFEDKYEMVLILEFLSGGEL 135
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 51 VNQTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVILLKGFNLAGVIP-------- 102
+ + S V D N + D + T+ H++ LL F+LA ++P
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 103 ---------EEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPL-E 152
+ G L L +DLS N SLP L LT L + NRL+ S+PL
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119
Query: 153 IGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGN-LKNLTEFR 211
+ + L+EL L+ N+L P L L ++ L++NN T +P N L+NL
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178
Query: 212 IDGSNLTGRIPNFIGN 227
+ ++L F G+
Sbjct: 179 LQENSLYTIPKGFFGS 194
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ NN TE
Sbjct: 151 EKLSLANNNLTE 162
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D + LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ N LT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 644 LQTGYFTLRQIKAATNN-FDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLS-SKSKQGNR 700
+Q+G ++ +KA F KIG+G FG V+KG + V+A+K + +++
Sbjct: 6 VQSGLPGMQNLKADPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIE 65
Query: 701 EFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYL 737
+ EI ++S + K YG ++ +L ++ EYL
Sbjct: 66 DIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 102
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ NN TE
Sbjct: 151 EKLSLANNNLTE 162
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 51 VNQTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVILLKGFNLAGVIP-------- 102
+ + S V D N + D + T+ H++ LL F+LA ++P
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 103 ---------EEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPL-E 152
+ G L L +DLS N SLP L LT L + NRL+ S+PL
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119
Query: 153 IGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGN-LKNLTEFR 211
+ + L+EL L+ N+L P L L ++ L++NN T +P N L+NL
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178
Query: 212 IDGSNLTGRIPNFIGN 227
+ ++L F G+
Sbjct: 179 LQENSLYTIPKGFFGS 194
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D + LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ N LT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 81 NNTVCHVTVILLKGFNLAGVIP-----------------EEFGNLTFLQEVDLSRNYFNG 123
+ T+ H++ LL F+LA ++P + G L L +DLS N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ- 90
Query: 124 SLPKSFARLQNLTKLLILGNRLSGSIPL-EIGDISTLEELVLEDNQLVGPLPENLGNLKS 182
SLP L LT L + NRL+ S+PL + + L+EL L+ N+L P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 183 LRRILLSSNNFTGSIPESYGN-LKNLTEFRIDGSNLTGRIPNFIGN 227
L ++ L++NN T +P N L+NL + ++L F G+
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ NN TE
Sbjct: 151 EKLSLANNNLTE 162
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ N LT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 151
Query: 353 D---LSYNNFTE 361
+ L+ NN TE
Sbjct: 152 EKLSLANNNLTE 163
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 51 VNQTSCTEGSWNVTIDDSNGSNFTCDCTYSNNTVCHVTVILLKGFNLAGVIP-------- 102
+ + S V D N + D + T+ H++ LL F+LA ++P
Sbjct: 4 ICEVSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLN 62
Query: 103 ---------EEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPL-E 152
+ G L L +DLS N SLP L LT L + NRL+ S+PL
Sbjct: 63 LDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 120
Query: 153 IGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFT 194
+ + L+EL L+ N+L P L L ++ L++NN T
Sbjct: 121 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D LT G L LDL L+ +P L LT L +S + +
Sbjct: 58 LTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 114
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ N LT G+L L+
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 174
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 175 LDTLLLQENSL 185
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 111 LQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLV 170
L EVDLS N + F ++Q L +L I NRL + L I TL+ L L N L+
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308
Query: 171 GPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLT 208
+ N L + L N+ ++ LKNLT
Sbjct: 309 H-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 57/320 (17%)
Query: 78 TYSNNTVCHVTVILLKGFNLAGVIPEEFGNLTFLQ--EVDLSRNYFNGSLPKSFARLQNL 135
T+ N+T+ + LL F E NL LQ E+D +FA +
Sbjct: 51 TFKNSTMRKLPAALLDSFRQV-----ELLNLNDLQIEEID----------TYAFAYAHTI 95
Query: 136 TKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNFT 194
KL + N + P ++ L LVLE N L LP + N L + +S+NN
Sbjct: 96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE 154
Query: 195 GSIPESYGNLKNLTEFRIDGSNLT----GRIPN-FIGNWT-----------KLDRLDLQG 238
+++ +L ++ + LT IP+ F N + ++ LD
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214
Query: 239 TSL---EGPIPSTISQLK----NLTE----LRISDLKGSSSSFPNLQD--------MKKM 279
S+ GP+ ++ LK NLT+ L L S+ L+ M+++
Sbjct: 215 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274
Query: 280 ERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSG 339
ERL + N + + Y + + LK+LDLS N L V +++ ++L +NS+
Sbjct: 275 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV- 331
Query: 340 TLPDWILTSEKNLDLSYNNF 359
TL + KNL LS+N++
Sbjct: 332 TLKLSTHHTLKNLTLSHNDW 351
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQ-LSSKSKQG-NREFVNEIGMISALQH 714
+ ++ KIG+G FG V+K G +A+K+ L K+G + EI ++ L+H
Sbjct: 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 75
Query: 715 QNLVKLYGCCIE--------GNQLLLVYEYLENNSLARALFGNAITKITYT 757
+N+V L C + LV+++ E++ LA L N + K T +
Sbjct: 76 ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHD-LA-GLLSNVLVKFTLS 124
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 661 FDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLS-SKSKQGNREFVNEIGMISALQHQNLV 718
F +IG+G FG V+KG + V+A+K + +++ + EI ++S +
Sbjct: 25 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSSYVT 84
Query: 719 KLYGCCIEGNQLLLVYEYL 737
K YG ++G++L ++ EYL
Sbjct: 85 KYYGSYLKGSKLWIIMEYL 103
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQ-LSSKSKQG-NREFVNEIGMISALQH 714
+ ++ KIG+G FG V+K G +A+K+ L K+G + EI ++ L+H
Sbjct: 17 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 715 QNLVKLYGCCIE--------GNQLLLVYEYLENNSLARALFGNAITKITYT 757
+N+V L C + LV+++ E++ LA L N + K T +
Sbjct: 77 ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHD-LA-GLLSNVLVKFTLS 125
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 661 FDAANKIGEGGFGPVYKGT-LSDGAVIAVKQL---SSKSKQGNREFVNEIGMISALQ-HQ 715
++ K+G+G +G V+K G V+AVK++ S R F EI +++ L H+
Sbjct: 11 YELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTF-REIMILTELSGHE 69
Query: 716 NLVKLYGCCIEGN--QLLLVYEYLENN 740
N+V L N + LV++Y+E +
Sbjct: 70 NIVNLLNVLRADNDRDVYLVFDYMETD 96
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQ-LSSKSKQG-NREFVNEIGMISALQH 714
+ ++ KIG+G FG V+K G +A+K+ L K+G + EI ++ L+H
Sbjct: 17 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 715 QNLVKLYGCCIE--------GNQLLLVYEYLENNSLARALFGNAITKIT 755
+N+V L C + LV+++ E++ LA L N + K T
Sbjct: 77 ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHD-LA-GLLSNVLVKFT 123
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQ-LSSKSKQG-NREFVNEIGMISALQH 714
+ ++ KIG+G FG V+K G +A+K+ L K+G + EI ++ L+H
Sbjct: 17 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 715 QNLVKLYGCCIE--------GNQLLLVYEYLENNSLARALFGNAITKITYT 757
+N+V L C + LV+++ E++ LA L N + K T +
Sbjct: 77 ENVVNLIEICRTKASPYNRCKASIYLVFDFCEHD-LA-GLLSNVLVKFTLS 125
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQN 716
++F+ +G+G FG V K + D A+K++ +++ ++E+ ++++L HQ
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH-TEEKLSTILSEVXLLASLNHQY 63
Query: 717 LVKLYGCCIE-------------GNQLLLVYEYLENNSL 742
+V+ Y +E + L + EY EN +L
Sbjct: 64 VVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTL 102
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQN 716
++F+ +G+G FG V K + D A+K++ +++ ++E+ ++++L HQ
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH-TEEKLSTILSEVMLLASLNHQY 63
Query: 717 LVKLYGCCIE-------------GNQLLLVYEYLENNSL 742
+V+ Y +E + L + EY EN +L
Sbjct: 64 VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTL 102
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFV-NEIGMISALQHQNL 717
+F+ +G GGFG V++ D A+K++ +++ RE V E+ ++ L+H +
Sbjct: 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI 65
Query: 718 VKLYGCCIEGN 728
V+ + +E N
Sbjct: 66 VRYFNAWLEKN 76
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F +G G FG VYKG + +G +A+ +L + S + N+E ++E +++++
Sbjct: 49 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASV 108
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 109 DNPHVCRLLGICL 121
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 667 IGEGGFG--------PVYKGTLSDGAVIAVKQLSSKS-KQGNREFVNEIGMISALQHQNL 717
+GEG FG P GT G ++AVK L Q + EI ++ L H+++
Sbjct: 16 LGEGHFGKVSLYCYDPTNDGT---GEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHI 72
Query: 718 VKLYGCCIEGNQ--LLLVYEYLENNSLARALFGNAI 751
VK GCC + + + LV EY+ SL L + +
Sbjct: 73 VKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCV 108
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 667 IGEGGFG--------PVYKGTLSDGAVIAVKQLSSKS-KQGNREFVNEIGMISALQHQNL 717
+GEG FG P GT G ++AVK L Q + EI ++ L H+++
Sbjct: 17 LGEGHFGKVSLYCYDPTNDGT---GEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHI 73
Query: 718 VKLYGCCIEGNQ--LLLVYEYLENNSLARALFGNAI 751
VK GCC + + + LV EY+ SL L + +
Sbjct: 74 VKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCV 109
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 657 ATNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREF-----VNEIGM-- 708
AT+ ++ +IG G +G VYK G +A+K + + G V E+ +
Sbjct: 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLR 66
Query: 709 -ISALQHQNLVKLYGCCIEGN-----QLLLVYEYLENN 740
+ A +H N+V+L C ++ LV+E+++ +
Sbjct: 67 RLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQD 104
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 111 LQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLV 170
L EVDLS N + F ++Q L +L I NRL + L I TL+ L L N L+
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314
Query: 171 GPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLT 208
+ N L + L N+ ++ LKNLT
Sbjct: 315 H-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 133/321 (41%), Gaps = 57/321 (17%)
Query: 77 CTYSNNTVCHVTVILLKGFNLAGVIPEEFGNLTFLQ--EVDLSRNYFNGSLPKSFARLQN 134
T+ N+T+ + LL F E NL LQ E+D +FA
Sbjct: 56 VTFKNSTMRKLPAALLDSFRQV-----ELLNLNDLQIEEIDTY----------AFAYAHT 100
Query: 135 LTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNF 193
+ KL + N + P ++ L LVLE N L LP + N L + +S+NN
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 194 TGSIPESYGNLKNLTEFRIDGSNLT----GRIPN-FIGNWT-----------KLDRLDLQ 237
+++ +L ++ + LT IP+ F N + ++ LD
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219
Query: 238 GTSL---EGPIPSTISQLK----NLTE----LRISDLKGSSSSFPNLQD--------MKK 278
S+ GP+ ++ LK NLT+ L L S+ L+ M++
Sbjct: 220 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 279 MERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLS 338
+ERL + N + + Y + + LK+LDLS N L V +++ ++L +NS+
Sbjct: 280 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 337
Query: 339 GTLPDWILTSEKNLDLSYNNF 359
TL + KNL LS+N++
Sbjct: 338 -TLKLSTHHTLKNLTLSHNDW 357
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 128 SFARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEELVLEDNQLVGPLPENL-GNLKSLRR 185
+ L NLT L++ GN+L S+P + D ++ L+ELVL +NQL LP+ + L +L
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 186 ILLSSNNFTGSIPES-YGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGP 244
+ L+ N S+P+ + L NLTE + + L T+L L L L+
Sbjct: 138 LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 245 IPSTISQLKNLTELRISD 262
+L +L + + D
Sbjct: 197 PDGVFDRLTSLQYIWLHD 214
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 84 VCHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILG 142
+ ++T ++L G L + F LT L+E+ L N SLP F +L NLT L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAH 142
Query: 143 NRLSGSIPLEIGD-ISTLEELVLEDNQLVGPLPE----NLGNLKSLR 184
N+L S+P + D ++ L EL L NQL LPE L LK LR
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLR 187
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 68/177 (38%), Gaps = 34/177 (19%)
Query: 177 LGNLKSLRRILLSSNNFTGSIPES-YGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLD 235
L L +L ++L+ N S+P + L NL E + + L T L L+
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 236 LQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPE 295
L L+ +L NLTEL +S + LQ + PE
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLS--------YNQLQSL-----------------PE 174
Query: 296 YIED-MTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLP------DWI 345
+ D +T LK L L NQL G+ L + YI+L +N T P +WI
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEEL 162
F LT L ++L+ N SLPK F +L NLT+L + N+L S+P + D ++ L++L
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL 186
Query: 163 VLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIP 198
L NQL L SL+ I L N + + P
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 666 KIGEGGFGPVYKGTLSDGAV-IAVKQLSSK--SKQGNREFVNEIGMISALQHQNLVKLYG 722
+IG G F VYKG ++ V +A +L + +K + F E + LQH N+V+ Y
Sbjct: 33 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEXLKGLQHPNIVRFYD 92
Query: 723 ---CCIEGNQ-LLLVYEYLENNSLARALFGNAITKI 754
++G + ++LV E + +L L + KI
Sbjct: 93 SWESTVKGKKCIVLVTELXTSGTLKTYLKRFKVXKI 128
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ NR E+ ++ L H N+V+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHCNIVRL 78
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F + G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 15 TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 75 DNPHVCRLLGICL 87
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ NR E+ ++ L H N+V+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHCNIVRL 78
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 667 IGEGGFGPVYKGTLSD-GAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG VY+ L D G ++A+K++ NR E+ ++ L H N+V+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHCNIVRL 78
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
+GEG FG VY+G + + +AVK N+E F++E ++ L H ++VKL
Sbjct: 16 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 75
Query: 722 GCCIEGNQLLLVYE---------YLENNS 741
G IE ++ E YLE N
Sbjct: 76 G-IIEEEPTWIIMELYPYGELGHYLERNK 103
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F + G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 22 TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 81
Query: 713 QHQNLVKLYGCCIEGNQLLLV 733
+ ++ +L G C+ L++
Sbjct: 82 DNPHVCRLLGICLTSTVQLIM 102
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
+GEG FG VY+G + + +AVK N+E F++E ++ L H ++VKL
Sbjct: 32 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 91
Query: 722 GCCIEGNQLLLVYE---------YLENN 740
G IE ++ E YLE N
Sbjct: 92 G-IIEEEPTWIIMELYPYGELGHYLERN 118
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 639 LRGLDLQTGYFTLRQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQ---- 690
+G+ + G + ++ ++ K+G G +G V K S+ A+ +K+
Sbjct: 16 FQGIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFD 75
Query: 691 ---LSSKSK---QGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
S +K + + E NEI ++ +L H N++KL+ + LV E+ E L
Sbjct: 76 KGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGEL 133
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 85 CHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
C T + G +LA V G T Q + L N P F RL LT+L + N+
Sbjct: 17 CSGTTVDCSGKSLASV---PTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 73
Query: 145 LSGSIPLEIGD-ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNF 193
L+ +P + D ++ L +L L DNQL NLKSL I L +N +
Sbjct: 74 LT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 234 LDLQGTSLEGPIPS---TISQLKNLTELRISDLKGSSSSFPNLQD-MKKMERLILRNCLI 289
+D G SL +P+ T +Q+ L + +I+ L+ P + D + ++ RL L N +
Sbjct: 22 VDCSGKSLAS-VPTGIPTTTQVLYLYDNQITKLE------PGVFDRLTQLTRLDLDNNQL 74
Query: 290 TGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
T + +T L L L+ NQL G NLK + +I+L NN
Sbjct: 75 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 85 CHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
C T + G +LA V G T Q + L N P F RL LT+L + N+
Sbjct: 9 CSGTTVDCSGKSLASV---PTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 145 LSGSIPLEIGD-ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNF 193
L+ +P + D ++ L +L L DNQL NLKSL I L +N +
Sbjct: 66 LT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 234 LDLQGTSLEGPIPS---TISQLKNLTELRISDLKGSSSSFPNLQD-MKKMERLILRNCLI 289
+D G SL +P+ T +Q+ L + +I+ L+ P + D + ++ RL L N +
Sbjct: 14 VDCSGKSLAS-VPTGIPTTTQVLYLYDNQITKLE------PGVFDRLTQLTRLDLDNNQL 66
Query: 290 TGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
T + +T L L L+ NQL G NLK + +I+L NN
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 81 NNTVCHVTVILLKGFNLAGVIP-----------------EEFGNLTFLQEVDLSRNYFNG 123
+ T+ H++ LL F+LA ++P + G L L +DLS N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ- 90
Query: 124 SLPKSFARLQNLTKLLILGNRLSGSIPL-EIGDISTLEELVLEDNQLVGPLPENLGNLKS 182
SLP L LT L + NRL+ S+PL + + L+EL L+ N+L P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 183 LRRILLSSNNFTGSIPESYGN-LKNLTEFRIDGSNLTGRIPNFIGN 227
L ++ L++N+ T +P N L+NL + ++L F G+
Sbjct: 150 LEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ N+ TE
Sbjct: 151 EKLSLANNDLTE 162
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ N LT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 667 IGEGGFGPVYKGTLS----DGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
+GEG FG VY+G + + +AVK N+E F++E ++ L H ++VKL
Sbjct: 20 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79
Query: 722 GCCIEGNQLLLVYE---------YLENNS 741
G IE ++ E YLE N
Sbjct: 80 G-IIEEEPTWIIMELYPYGELGHYLERNK 107
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISAL 712
F + G FG VYKG + +G +A+K+L + S + N+E ++E +++++
Sbjct: 22 TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 81
Query: 713 QHQNLVKLYGCCI 725
+ ++ +L G C+
Sbjct: 82 DNPHVCRLLGICL 94
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 85 CHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
C T++ + LA V G T Q + L+ N P F L NL +L N+
Sbjct: 12 CDQTLVNCQNIRLASV---PAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK 68
Query: 145 LSGSIPLEIGD-ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L+ +IP + D ++ L +L L DN L NLKSL I L +N
Sbjct: 69 LT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 293 IPEYIED-MTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
IP + D +T L LDL+ N L G NLK + +I+L NN
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQN 716
++F+ +G+G FG V K + D A+K++ +++ ++E+ ++++L HQ
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH-TEEKLSTILSEVMLLASLNHQY 63
Query: 717 LVKLYGCCIE-------------GNQLLLVYEYLENNSL 742
+V+ Y +E + L + EY EN +L
Sbjct: 64 VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTL 102
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVL 164
F + LQ +DLSR ++ L +L+ L++ GN + +S+L++LV
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 165 EDNQLVGPLPENLGNLKSLRRILLSSNNFTG-SIPESYGNLKNLTEFRIDGSNL 217
+ L +G+LK+L+ + ++ N +PE + NL NL + + +
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 91 LLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSI- 149
L++ F L PE F NLT L+ +DLS N L + L + + +
Sbjct: 136 LIQSFKL----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 191
Query: 150 ---PLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNFTGSIPE 199
P +I L+EL L+ NQL +P+ + L SL++I L +N + S P
Sbjct: 192 FIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 265 GSSSSFP--NLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQL 313
S +FP +L+ +K++ + N + + ++PEY ++T+L+ LDLS N++
Sbjct: 114 ASLENFPIGHLKTLKELN--VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVL 164
F + LQ +DLSR ++ L +L+ L++ GN + +S+L++LV
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 165 EDNQLVGPLPENLGNLKSLRRILLSSNNFTG-SIPESYGNLKNLTEFRIDGSNL 217
+ L +G+LK+L+ + ++ N +PE + NL NL + + +
Sbjct: 110 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 91 LLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSI- 149
L++ F L PE F NLT L+ +DLS N L + L + + +
Sbjct: 137 LIQSFKL----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 192
Query: 150 ---PLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNFTGSIPE 199
P +I L+EL L+ NQL +P+ + L SL++I L +N + S P
Sbjct: 193 FIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 265 GSSSSFP--NLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQL 313
S +FP +L+ +K++ + N + + ++PEY ++T+L+ LDLS N++
Sbjct: 115 ASLENFPIGHLKTLKELN--VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 661 FDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQHQNLV 718
++ IG GGF V + G ++A+K + + + + EI + L+HQ++
Sbjct: 12 YELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHIC 71
Query: 719 KLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITYTFS 759
+LY N++ +V EY L R +F ++ + Y S
Sbjct: 72 QLYHVLETANKIFMVLEYCPGGELFDYIISQDRLSEEETRVVFRQIVSAVAYVHS 126
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 87 VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLS 146
VT + L G N ++P+E N L +DLS N + +SF+ + L L++ NRL
Sbjct: 33 VTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 147 GSIPLEIGDISTLEELVLEDNQLVGPLPEN-LGNLKSLRRILLSSN 191
P + +L L L N + +PE +L +L + + +N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 115 DLSRNYFNGS----LPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLV 170
D++ Y +G+ +PK + ++LT + + NR+S +++ L L+L N+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 171 GPLPENLGNLKSLRRILLSSNNFTGSIPE-SYGNLKNLTEFRIDGSNLTGRI-PNFIGNW 228
P LKSLR + L N+ + +PE ++ +L L+ I + L ++ +W
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150
Query: 229 TK 230
K
Sbjct: 151 VK 152
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 86 HVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRL 145
H+T+I L ++ + + F N+T L + LS N P++F L++L L + GN +
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Query: 146 SGSIPLEIGDISTLEELVLEDNQL 169
S D+S L L + N L
Sbjct: 115 SVVPEGAFNDLSALSHLAIGANPL 138
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 658 TNNFDAANKIGEGGFGPVYKGT--LSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQH 714
++D +GEG G V +++ AV AVK + K E + EI + L H
Sbjct: 5 VEDWDLVQTLGEGAAGEVQLAVNRVTEEAV-AVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSL 742
+N+VK YG EGN L EY L
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 655 KAATNNFDAANKIGEGGFGPVYKGTLSDGAV----IAVKQL---SSKSKQGNREFVNEIG 707
K + +K+G GG VY L++ + +A+K + + ++ + F E+
Sbjct: 7 KIINERYKIVDKLGGGGMSTVY---LAEDTILNIKVAIKAIFIPPREKEETLKRFEREVH 63
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLAR 744
S L HQN+V + E + LV EY+E +L+
Sbjct: 64 NSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSE 100
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVL 164
F + LQ +DLSR ++ L +L+ L++ GN + +S+L++LV
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 165 EDNQLVGPLPENLGNLKSLRRILLSSNNFTG-SIPESYGNLKNLTEFRIDGSNL 217
+ L +G+LK+L+ + ++ N +PE + NL NL + + +
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 91 LLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSI- 149
L++ F L PE F NLT L+ +DLS N L + L + + +
Sbjct: 136 LIQSFKL----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 191
Query: 150 ---PLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNFTGSIPE 199
P +I L+EL L+ NQL +P+ + L SL++I L +N + S P
Sbjct: 192 FIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 265 GSSSSFP--NLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQL 313
S +FP +L+ +K++ + N + + ++PEY ++T+L+ LDLS N++
Sbjct: 114 ASLENFPIGHLKTLKELN--VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ NQLT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ N TE
Sbjct: 151 EKLSLANNQLTE 162
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 81 NNTVCHVTVILLKGFNLAGVIP-----------------EEFGNLTFLQEVDLSRNYFNG 123
+ T+ H++ LL F+LA ++P + G L L +DLS N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ- 90
Query: 124 SLPKSFARLQNLTKLLILGNRLSGSIPL-EIGDISTLEELVLEDNQLVGPLPENLGNLKS 182
SLP L LT L + NRL+ S+PL + + L+EL L+ N+L P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 183 LRRILLSSNNFTGSIPESYGN-LKNLTEFRIDGSNLTGRIPNFIGN 227
L ++ L++N T +P N L+NL + ++L F G+
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 85 CHVTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNR 144
C T + G +LA V G T Q + L N P F RL LT+L + N+
Sbjct: 9 CSGTTVDCSGKSLASV---PTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 145 LSGSIPLEIGD-ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNF 193
L+ +P + D ++ L +L L DNQL NL+SL I L +N +
Sbjct: 66 LT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 234 LDLQGTSLEGPIPS---TISQLKNLTELRISDLKGSSSSFPNLQD-MKKMERLILRNCLI 289
+D G SL +P+ T +Q+ L + RI+ L+ P + D + ++ RL L N +
Sbjct: 14 VDCSGKSLAS-VPTGIPTTTQVLYLYDNRITKLE------PGVFDRLTQLTRLDLDNNQL 66
Query: 290 TGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
T + +T L L L+ NQL G NL+ + +I+L NN
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 667 IGEGGFGPV-----YKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLY 721
+GEG FG V YK +QL KS R EI + L+H +++KLY
Sbjct: 17 LGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMR-VEREISYLKLLRHPHIIKLY 75
Query: 722 GCCIEGNQLLLVYEY 736
+++V EY
Sbjct: 76 DVITTPTDIVMVIEY 90
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 97/247 (39%), Gaps = 29/247 (11%)
Query: 103 EEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEEL 162
+ F +L L+ +DLS NY + F L +LT L +LGN +G+ S
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-----LGETS----- 143
Query: 163 VLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNLTGRIP 222
L +L L+ LR + + + FT + + L L E ID S+L P
Sbjct: 144 ----------LFSHLTKLQILR--VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191
Query: 223 NFIGNWTKLDRLDLQGTS--LEGPIPSTISQLKNLTELRISDLKG-SSSSFPNLQDMKKM 279
+ + + L L L I ++ ELR +DL S + +
Sbjct: 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251
Query: 280 ERLILRNCLITG----RIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
++ RN IT ++ + + ++ L L+ S NQL GI L + I+L N
Sbjct: 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Query: 336 SLSGTLP 342
+ P
Sbjct: 312 PWDCSCP 318
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVL 164
F + LQ +DLSR ++ L +L+ L++ GN + +S+L++LV
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 165 EDNQLVGPLPENLGNLKSLRRILLSSNNFTG-SIPESYGNLKNLTEFRIDGSNL 217
+ L +G+LK+L+ + ++ N +PE + NL NL + + +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 91 LLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSI- 149
L++ F L PE F NLT L+ +DLS N L + L + + +
Sbjct: 135 LIQSFKL----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 150 ---PLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNFTGSIPE 199
P +I L+EL L+ NQL +P+ + L SL++I L +N + S P
Sbjct: 191 FIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 265 GSSSSFP--NLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQL 313
S +FP +L+ +K++ + N + + ++PEY ++T+L+ LDLS N++
Sbjct: 113 ASLENFPIGHLKTLKELN--VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ NQLT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 81 NNTVCHVTVILLKGFNLAGVIP-----------------EEFGNLTFLQEVDLSRNYFNG 123
+ T+ H++ LL F+LA ++P + G L L +DLS N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ- 90
Query: 124 SLPKSFARLQNLTKLLILGNRLSGSIPL-EIGDISTLEELVLEDNQLVGPLPENLGNLKS 182
SLP L LT L + NRL+ S+PL + + L+EL L+ N+L P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 183 LRRILLSSNNFTGSIPESYGN-LKNLTEFRIDGSNLTGRIPNFIGN 227
L ++ L++N T +P N L+NL + ++L F G+
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ N TE
Sbjct: 151 EKLSLANNQLTE 162
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 658 TNNFDAANKIGEGGFGPVYK------GTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISA 711
++N+D ++G+G F V + G +I K+LS++ Q + E +
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQ---KLEREARICRK 61
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYLENNSL-----ARALFGNA 750
LQH N+V+L+ E + LV++ + L AR + A
Sbjct: 62 LQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEA 105
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 658 TNNFDAANKIGEGGFGPVYK------GTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISA 711
++N+D ++G+G F V + G +I K+LS++ Q + E +
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQ---KLEREARICRK 61
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYLENNSL-----ARALFGNA 750
LQH N+V+L+ E + LV++ + L AR + A
Sbjct: 62 LQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEA 105
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ NQLT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 81 NNTVCHVTVILLKGFNLAGVIP-----------------EEFGNLTFLQEVDLSRNYFNG 123
+ T+ H++ LL F+LA ++P + G L L +DLS N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ- 90
Query: 124 SLPKSFARLQNLTKLLILGNRLSGSIPL-EIGDISTLEELVLEDNQLVGPLPENLGNLKS 182
SLP L LT L + NRL+ S+PL + + L+EL L+ N+L P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 183 LRRILLSSNNFTGSIPESYGN-LKNLTEFRIDGSNLTGRIPNFIGN 227
L ++ L++N T +P N L+NL + ++L F G+
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ N TE
Sbjct: 151 EKLSLANNQLTE 162
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 658 TNNFDAANKIGEGGFGPVYK------GTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISA 711
++N+D ++G+G F V + G +I K+LS++ Q + E +
Sbjct: 4 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQ---KLEREARICRK 60
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYLENNSL-----ARALFGNA 750
LQH N+V+L+ E + LV++ + L AR + A
Sbjct: 61 LQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEA 104
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVL 164
F + LQ +DLSR ++ L +L+ L++ GN + +S+L++LV
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 165 EDNQLVGPLPENLGNLKSLRRILLSSNNFTG-SIPESYGNLKNLTEFRIDGSNL 217
+ L +G+LK+L+ + ++ N +PE + NL NL + + +
Sbjct: 110 LETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 91 LLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSI- 149
L++ F L PE F NLT L+ +DLS N L + L + + +
Sbjct: 137 LIQSFKL----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 192
Query: 150 ---PLEIGDISTLEELVLEDNQLVGPLPENL-GNLKSLRRILLSSNNFTGSIPE 199
P +I L+EL L+ NQL +P+ + L SL++I L +N + S P
Sbjct: 193 FIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 247 STISQLKNLTELRISDLKGSSSSFP--NLQDMKKMERLILRNCLITGRIPEYIEDMTDLK 304
S +S L+ L L + S +FP +L+ +K++ + N + + ++PEY ++T+L+
Sbjct: 99 SGLSSLQKLVALETN--LASLENFPIGHLKTLKELN--VAHNLIQSFKLPEYFSNLTNLE 154
Query: 305 ILDLSFNQL 313
LDLS N++
Sbjct: 155 HLDLSSNKI 163
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 658 TNNFDAANKIGEGGFGPVYK------GTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISA 711
++N+D ++G+G F V + G +I K+LS++ Q + E +
Sbjct: 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQ---KLEREARICRK 84
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYLENNSL-----ARALFGNA 750
LQH N+V+L+ E + LV++ + L AR + A
Sbjct: 85 LQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEA 128
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 647 GYFTLRQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREF 702
G F ++ + +G+G FG V K T + AV + + K K
Sbjct: 20 GMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESL 79
Query: 703 VNEIGMISALQHQNLVKLY 721
+ E+ ++ L H N++KLY
Sbjct: 80 LREVQLLKQLDHPNIMKLY 98
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 111 LQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLV 170
LQ +DLSR ++ L +L+ L++ GN + +S+L++LV + L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 171 GPLPENLGNLKSLRRILLSSNNFTG-SIPESYGNLKNLTEFRIDGSNL 217
+G+LK+L+ + ++ N +PE + NL NL + + +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 105 FGNLTFLQEVDLSRNYFNGS-LPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELV 163
F L+ L+ + ++ N F + LP F L+NLT L + +L P +S+L+ L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 164 LEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPE 199
+ NQL L SL++I L +N + S P
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 15/204 (7%)
Query: 179 NLKSLRRILLSSN--NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDL 236
+L SL + LS N +F G +S +L + + + NF+G +L+ LD
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 403
Query: 237 QGTSLEGPIP-STISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILR-NCLITGRIP 294
Q ++L+ S L+NL L IS + + +E L + N +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWI---LTSEKN 351
+ ++ +L LDLS QL P +L + + + +N L ++PD I LTS +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQK 522
Query: 352 LDLSYNNFTESSPATCRESRVNIL 375
+ L N P C R++ L
Sbjct: 523 IWLHTN------PWDCSCPRIDYL 540
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 652 RQIKAATNNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFV-NEIGMI 709
+Q + F+ +G G F V + G + AVK + K+ +G + NEI ++
Sbjct: 15 KQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVL 74
Query: 710 SALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYT 757
++H+N+V L N L LV + + LF + K YT
Sbjct: 75 RKIKHENIVALEDIYESPNHLYLVMQLVSGGE----LFDRIVEKGFYT 118
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 655 KAATNNFDAANKIGEGGFGPVYK-GTLSDGAVIAVKQLSSK--SKQGNREFVN-EIGMIS 710
K + +F +G G FG V+ + +G A+K L + + E N E M+S
Sbjct: 2 KYSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLS 61
Query: 711 ALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARAL-----FGNAITKI 754
+ H +++++G + Q+ ++ +Y+E L L F N + K
Sbjct: 62 IVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKF 110
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 111 LQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLV 170
LQ +DLSR ++ L +L+ L++ GN + +S+L++LV + L
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 171 GPLPENLGNLKSLRRILLSSNNFTG-SIPESYGNLKNLTEFRIDGSNL 217
+G+LK+L+ + ++ N +PE + NL NL + + +
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 7/190 (3%)
Query: 179 NLKSLRRILLSSN--NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDL 236
+L SL + LS N +F G +S +L + + + NF+G +L+ LD
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 427
Query: 237 QGTSLEGPIP-STISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILR-NCLITGRIP 294
Q ++L+ S L+NL L IS + + +E L + N +P
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSG--TLPDWILTSEKNL 352
+ ++ +L LDLS QL P +L + + +++N+ T P L S + L
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547
Query: 353 DLSYNNFTES 362
D S N+ S
Sbjct: 548 DYSLNHIMTS 557
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWILTSEKNL 352
+P + + L +LD+SFN+LT G L+ L ++ ++L N L TLP +LT L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 353 D---LSYNNFTE 361
+ L+ N TE
Sbjct: 151 EKLSLANNQLTE 162
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGS 266
LT+ +D LT G L LDL L+ +P L LT L +S + +
Sbjct: 57 LTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 267 SSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKK 326
S L+ + +++ L L+ + P + L+ L L+ NQLT G+L L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 327 IDYIFLTNNSL 337
+D + L NSL
Sbjct: 174 LDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 81 NNTVCHVTVILLKGFNLAGVIP-----------------EEFGNLTFLQEVDLSRNYFNG 123
+ T+ H++ LL F+LA ++P + G L L +DLS N
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ- 90
Query: 124 SLPKSFARLQNLTKLLILGNRLSGSIPL-EIGDISTLEELVLEDNQLVGPLPENLGNLKS 182
SLP L LT L + NRL+ S+PL + + L+EL L+ N+L P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 183 LRRILLSSNNFTGSIPESYGN-LKNLTEFRIDGSNLTGRIPNFIGN 227
L ++ L++N T +P N L+NL + ++L F G+
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 647 GYFTLRQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREF 702
G F ++ + +G+G FG V K T + AV + + K K
Sbjct: 14 GMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESL 73
Query: 703 VNEIGMISALQHQNLVKLY 721
+ E+ ++ L H N++KLY
Sbjct: 74 LREVQLLKQLDHPNIMKLY 92
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 654 IKAATNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLSSKS---KQGNREFVNEIGMI 709
I N+F IG GGFG VY +D G + A+K L K KQG +NE M+
Sbjct: 184 IHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIML 243
Query: 710 S 710
S
Sbjct: 244 S 244
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 654 IKAATNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLSSKS---KQGNREFVNEIGMI 709
I N+F IG GGFG VY +D G + A+K L K KQG +NE M+
Sbjct: 184 IHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIML 243
Query: 710 S 710
S
Sbjct: 244 S 244
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +AVK QL+S S Q + E+ ++ L
Sbjct: 8 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQ---KLFREVRIMKVLN 64
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITY 756
H N+VKL+ L LV EY + ARA F ++ + Y
Sbjct: 65 HPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGWMKEKEARAKFRQIVSAVQY 121
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 654 IKAATNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLSSKS---KQGNREFVNEIGMI 709
I N+F IG GGFG VY +D G + A+K L K KQG +NE M+
Sbjct: 184 IHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIML 243
Query: 710 S 710
S
Sbjct: 244 S 244
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQGNREFV-NEIGMISALQHQNL 717
+F+ +G GGFG V++ D A+K++ +++ RE V E+ ++ L+H +
Sbjct: 7 DFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI 66
Query: 718 VKLYGCCIE 726
V+ + +E
Sbjct: 67 VRYFNAWLE 75
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 654 IKAATNNFDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLSSKS---KQGNREFVNEIGMI 709
I N+F IG GGFG VY +D G + A+K L K KQG +NE M+
Sbjct: 183 IHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIML 242
Query: 710 S 710
S
Sbjct: 243 S 243
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +AVK QL+S S Q + E+ ++ L
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQ---KLFREVRIMKVLN 71
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITY 756
H N+VKL+ L LV EY + ARA F ++ + Y
Sbjct: 72 HPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQY 128
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +AVK QL+S S Q + E+ ++ L
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQ---KLFREVRIMKVLN 71
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITY 756
H N+VKL+ L LV EY + ARA F ++ + Y
Sbjct: 72 HPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQY 128
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 661 FDAANKIGEGGFGPVYKGTLSD-GAVIAVKQLS-SKSKQGNREFVNEIGMISALQHQNLV 718
F ++IG+G FG VYKG + V+A+K + +++ + EI ++S +
Sbjct: 21 FTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYIT 80
Query: 719 KLYGCCIEGNQLLLVYEYL 737
+ +G ++ +L ++ EYL
Sbjct: 81 RYFGSYLKSTKLWIIMEYL 99
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 91 LLKGFNLAGVIPEE-FGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNRLSGS 148
L G N G +P F +LT L +DL N LP + F RL +L +L + N+L+
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-E 126
Query: 149 IPLEIGDISTLEELVLEDNQL 169
+P I ++ L L L+ NQL
Sbjct: 127 LPRGIERLTHLTHLALDQNQL 147
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 301 TDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWI---LTSEKNLDLSYN 357
T+ +IL L NQ+T PG+ +L + ++L +N L G LP + LT LDL N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 358 NFT 360
T
Sbjct: 99 QLT 101
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +AVK QL+S S Q + E+ ++ L
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQ---KLFREVRIMKVLN 71
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITY 756
H N+VKL+ L LV EY + ARA F ++ + Y
Sbjct: 72 HPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQY 128
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 658 TNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQ 713
++ + K+G G +G V K T ++ A+ +K+ S + + ++E+ ++ L
Sbjct: 20 SDRYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLD 79
Query: 714 HQNLVKLYGCCIEGNQLLLVYE 735
H N++KLY + LV E
Sbjct: 80 HPNIMKLYEFFEDKRNYYLVME 101
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 111 LQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLV 170
LQ +DLSR ++ L +L+ L++ GN + +S+L++LV + L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 171 GPLPENLGNLKSLRRILLSSNNFTG-SIPESYGNLKNLTEFRIDGSNL 217
+G+LK+L+ + ++ N +PE + NL NL + + +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 7/190 (3%)
Query: 179 NLKSLRRILLSSN--NFTGSIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDL 236
+L SL + LS N +F G +S +L + + + NF+G +L+ LD
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 403
Query: 237 QGTSLEGPIP-STISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILR-NCLITGRIP 294
Q ++L+ S L+NL L IS + + +E L + N +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 295 EYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSG--TLPDWILTSEKNL 352
+ ++ +L LDLS QL P +L + + +++N+ T P L S + L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Query: 353 DLSYNNFTES 362
D S N+ S
Sbjct: 524 DYSLNHIMTS 533
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 661 FDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLS-SKSKQGNREFVNEIGMISALQHQNLV 718
F KIG+G FG V+KG + V+A+K + +++ + EI ++S +
Sbjct: 9 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 68
Query: 719 KLYGCCIEGNQLLLVYEYL 737
K YG ++ +L ++ EYL
Sbjct: 69 KYYGSYLKDTKLWIIMEYL 87
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 647 GYFTLRQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREF 702
G F ++ + +G+G FG V K T + AV + + K K
Sbjct: 37 GMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESL 96
Query: 703 VNEIGMISALQHQNLVKLY 721
+ E+ ++ L H N++KLY
Sbjct: 97 LREVQLLKQLDHPNIMKLY 115
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 661 FDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLS-SKSKQGNREFVNEIGMISALQHQNLV 718
F KIG+G FG V+KG + V+A+K + +++ + EI ++S +
Sbjct: 9 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 68
Query: 719 KLYGCCIEGNQLLLVYEYL 737
K YG ++ +L ++ EYL
Sbjct: 69 KYYGSYLKDTKLWIIMEYL 87
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 647 GYFTLRQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREF 702
G F ++ + +G+G FG V K T + AV + + K K
Sbjct: 38 GMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESL 97
Query: 703 VNEIGMISALQHQNLVKLY 721
+ E+ ++ L H N++KLY
Sbjct: 98 LREVQLLKQLDHPNIMKLY 116
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 661 FDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLS-SKSKQGNREFVNEIGMISALQHQNLV 718
F KIG+G FG V+KG + V+A+K + +++ + EI ++S +
Sbjct: 29 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 88
Query: 719 KLYGCCIEGNQLLLVYEYL 737
K YG ++ +L ++ EYL
Sbjct: 89 KYYGSYLKDTKLWIIMEYL 107
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEEL 162
F +LT L + L+ N SLP F L L KL + GN+L S+P + D ++ L+EL
Sbjct: 79 FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136
Query: 163 VLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIP----ESYGNLKNLTEF 210
L NQL L +L+ + LS+N S+P + G L+ +T F
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 233 RLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGR 292
+D QG SL+ +PS I +L+ + L ++ S + + K+ L L +
Sbjct: 18 EVDCQGKSLDS-VPSGIPADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWI---LTSE 349
+D+T+L L L+ NQL G+ +L ++D ++L N L +LP + LT
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKL 133
Query: 350 KNLDLSYNNFTESSPATCRESRVNI 374
K L L+ N +S PA + N+
Sbjct: 134 KELRLNTNQL-QSIPAGAFDKLTNL 157
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 643 DLQT--GYFTLRQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSK 696
DLQ G F + + + K+G G +G V K T + A+ +++ +S S
Sbjct: 19 DLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRK-TSVST 77
Query: 697 QGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYE 735
N + + E+ ++ L H N++KLY + LV E
Sbjct: 78 SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME 116
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNRLSGSIPLEIGD-ISTLEEL 162
F +LT L + L+ N SLP F L L KL + GN+L S+P + D ++ L+EL
Sbjct: 79 FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136
Query: 163 VLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIP----ESYGNLKNLTEF 210
L NQL L +L+ + LS+N S+P + G L+ +T F
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 233 RLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGR 292
+D QG SL+ +PS I +L+ + L ++ S + + K+ L L +
Sbjct: 18 EVDCQGKSLDS-VPSGIPADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 293 IPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLPDWI---LTSE 349
+D+T+L L L+ NQL G+ +L ++D ++L N L +LP + LT
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKL 133
Query: 350 KNLDLSYNNFTESSPATCRESRVNI 374
K L L+ N +S PA + N+
Sbjct: 134 KELRLNTNQL-QSIPAGAFDKLTNL 157
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 105 FGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGDI-STLEELV 163
F L+ LQ + L+ NY N P F+ L L L + NRL+ L D+ + LE L
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILD 532
Query: 164 LEDNQLVGPLPENLGNLKSL 183
+ NQL+ P P+ +L L
Sbjct: 533 ISRNQLLAPNPDVFVSLSVL 552
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVI--AVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
N IG G +G V K + G I A K++ + F EI ++ +L H N+++LY
Sbjct: 32 NTIGRGSWGEV-KIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYE 90
Query: 723 CCIEGNQLLLVYE 735
+ + LV E
Sbjct: 91 TFEDNTDIYLVME 103
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 665 NKIGEGGFGPVYKGTLSDGAVI--AVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
N IG G +G V K + G I A K++ + F EI ++ +L H N+++LY
Sbjct: 15 NTIGRGSWGEV-KIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYE 73
Query: 723 CCIEGNQLLLVYE 735
+ + LV E
Sbjct: 74 TFEDNTDIYLVME 86
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 658 TNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQ 713
++ + K+G G +G V K T ++ A+ +K+ S + + ++E+ ++ L
Sbjct: 3 SDRYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLD 62
Query: 714 HQNLVKLY 721
H N++KLY
Sbjct: 63 HPNIMKLY 70
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 188 LSSNNFTGSIPESYGNLKNLTEFRIDGSNLTG--RIPNFIGNWTKLDRLDLQGTSLEG-P 244
+ N FT S+ + LK L + + L ++ N + L+ LD+ SL
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419
Query: 245 IPSTISQLKNLTELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLK 304
T + +++ L +S + S F L K++ L L N I IP+ + + L+
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQ 476
Query: 305 ILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLP------DWI 345
L+++ NQL G+ L + YI+L +N T P +WI
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 523
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +AV+ QL+S S Q + E+ ++ L
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQ---KLFREVRIMKVLN 71
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITY 756
H N+VKL+ L LV EY + ARA F ++ + Y
Sbjct: 72 HPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQY 128
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +AV+ QL+S S Q + E+ ++ L
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQ---KLFREVRIMKVLN 71
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITY 756
H N+VKL+ L LV EY + ARA F ++ + Y
Sbjct: 72 HPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQY 128
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 229 TKLDRLDLQGTSLEGPIPSTISQLKNLTELRISDLKGSSSSFPN--LQDMKKMERLILRN 286
T L +L L G L+ ++L +LT L +S S PN + +++ L L
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS--TNQLQSLPNGVFDKLTQLKELALNT 109
Query: 287 CLITGRIPEYIEDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLSGTLP---- 342
+ + +T LK L L NQL G+ L + YI+L +N T P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 169
Query: 343 --DWI 345
+WI
Sbjct: 170 LSEWI 174
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 87 VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKS-FARLQNLTKLLILGNRL 145
+T + L G L + F LT L ++LS N SLP F +L L +L + N+L
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQL 112
Query: 146 SGSIPLEIGD-ISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIP 198
S+P + D ++ L++L L NQL L SL+ I L N + + P
Sbjct: 113 Q-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 647 GYFTLRQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREF 702
G F ++ + +G+G FG V K T + AV + + K K
Sbjct: 14 GXFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESL 73
Query: 703 VNEIGMISALQHQNLVKLY 721
+ E+ ++ L H N+ KLY
Sbjct: 74 LREVQLLKQLDHPNIXKLY 92
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 667 IGEGGFGPVYKGT-LSDGA----VIAVKQL-SSKSKQGNREFVNEIGMISALQHQNLVKL 720
+G G FG VYKG + DG +A+K L + S + N+E ++E +++ + + +L
Sbjct: 25 LGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVSRL 84
Query: 721 YGCCI 725
G C+
Sbjct: 85 LGICL 89
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 77 CTYSNNTV-CH--------------VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYF 121
CT SNN V C +T I L+ + + P F L+ +DLS N
Sbjct: 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68
Query: 122 NGSLPKSFARLQNLTKLLILGNRLS 146
+ P +F L++L L++ GN+++
Sbjct: 69 SELAPDAFQGLRSLNSLVLYGNKIT 93
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 158 TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNL 217
T+ E+ LE N + P K LRRI LS+N + P+++ L++L + G+ +
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 218 T 218
T
Sbjct: 93 T 93
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 27/176 (15%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL----------T 256
+TE R++ + + P + KL R+DL + P L++L T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 257 ELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGP 316
EL S +G S L + K+ L + + +D+ +L +L L N+L
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRV----------DAFQDLHNLNLLSLYDNKLQTI 143
Query: 317 VPGILQNLKKIDYIFLTNNS-LSGTLPDWILTSEKNLDLSYNNFTESSPATCRESR 371
G L+ I + L N + W+ D + N E+S A C R
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFICDCHLKWL------ADYLHTNPIETSGARCTSPR 193
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 27/176 (15%)
Query: 207 LTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNL----------T 256
+TE R++ + + P + KL R+DL + P L++L T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 257 ELRISDLKGSSSSFPNLQDMKKMERLILRNCLITGRIPEYIEDMTDLKILDLSFNQLTGP 316
EL S +G S L + K+ NCL R+ + +D+ +L +L L N+L
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKI------NCL---RV-DAFQDLHNLNLLSLYDNKLQTI 143
Query: 317 VPGILQNLKKIDYIFLTNNS-LSGTLPDWILTSEKNLDLSYNNFTESSPATCRESR 371
G L+ I + L N + W+ D + N E+S A C R
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFICDCHLKWL------ADYLHTNPIETSGARCTSPR 193
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 77 CTYSNNTV-CH--------------VTVILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYF 121
CT SNN V C +T I L+ + + P F L+ +DLS N
Sbjct: 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68
Query: 122 NGSLPKSFARLQNLTKLLILGNRLS 146
+ P +F L++L L++ GN+++
Sbjct: 69 SELAPDAFQGLRSLNSLVLYGNKIT 93
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 158 TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTGSIPESYGNLKNLTEFRIDGSNL 217
T+ E+ LE N + P K LRRI LS+N + P+++ L++L + G+ +
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 218 T 218
T
Sbjct: 93 T 93
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 667 IGEGGFGPVYKGTLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKL 720
IG G FG V++ L + +A+K++ + NR E+ ++ ++H N+V L
Sbjct: 48 IGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNR----ELQIMRIVKHPNVVDL 97
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 23/117 (19%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +AVK QL+S S Q + E+ + L
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQ---KLFREVRIXKVLN 71
Query: 714 HQNLVKLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITY 756
H N+VKL+ L LV EY + ARA F ++ + Y
Sbjct: 72 HPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFRQIVSAVQY 128
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 78 GVITE-NPVWIIME 90
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 78 GVITE-NPVWIIME 90
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 78 GVITE-NPVWIIME 90
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 458 GVITE-NPVWIIME 470
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 142 GNRLSGSIPLEIGDISTLEELVLEDNQL--VGPLPENLGNLKSLRRILLSSNNFTGSIPE 199
N L+ ++ G ++ LE L+L+ NQL + + E +KSL+++ +S N+ S E
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV--SYDE 390
Query: 200 SYGNL---KNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLT 256
G+ K+L + + LT I F ++ LDL ++ IP + +L+ L
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQ 447
Query: 257 ELRIS 261
EL ++
Sbjct: 448 ELNVA 452
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 458 GVITE-NPVWIIME 470
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 18 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 78 GVITE-NPVWIIME 90
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 46 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 105
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 106 GVITE-NPVWIIME 118
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 92 LKGFNLAGVIPEEFGNLTFL---QEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGS 148
LK NL ++ NLT L +E+++S N+F P SF L +L KL ++ +++S
Sbjct: 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 149 IPLEIGDISTLEELVLEDNQLVGPLPENL 177
+++L EL L N L LP +L
Sbjct: 258 ERNAFDGLASLVELNLAHNNL-SSLPHDL 285
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 37/162 (22%)
Query: 76 DCTYSNNTVCHVT----VILLKGFNLAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFAR 131
D +C++ + +G+++ EE L+ +EV + G LP S +
Sbjct: 7 DVYIDQTNICYIDGKEGKLYYRGYSV-----EELAELSTFEEVVYL--LWWGKLP-SLSE 58
Query: 132 LQNLTKLLILGNRLSGSIPLEIGDISTLEELVLEDNQLVGPLPENLGNLKSLRRILLSSN 191
L+N K L S +P E+ +I + LP+N + +LR I+
Sbjct: 59 LENFKKELAK----SRGLPKEVIEI-------------MEALPKNTHPMGALRTII---- 97
Query: 192 NFTGSIPESYGNLKNLTE--FRIDGSNLTGRIPNFIGNWTKL 231
++ G+I +S G++ E +RI G ++T +IP + NW ++
Sbjct: 98 SYLGNIDDS-GDIPVTPEEVYRI-GISVTAKIPTIVANWYRI 137
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 23 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 83 GVITE-NPVWIIME 95
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 15 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 74
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 75 GVITE-NPVWIIME 87
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 20 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 79
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 80 GVITE-NPVWIIME 92
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 667 IGEGGFGPVYKGTL----SDGAVIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IGEG FG V++G + +A+K + + RE F+ E + H ++VKL
Sbjct: 21 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 80
Query: 722 GCCIEGNQLLLVYE 735
G E N + ++ E
Sbjct: 81 GVITE-NPVWIIME 93
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 652 RQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREFVNEIG 707
+Q + + +D + +G G F V K T A+ + + + + K+G+ E NEI
Sbjct: 11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSME--NEIA 68
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYT 757
++ ++H N+V L G L L+ + + LF + K YT
Sbjct: 69 VLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGE----LFDRIVEKGFYT 114
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 690 QLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLAR 744
++S KSK +F NE+ +I+ ++++ + G +++ ++YEY+EN+S+ +
Sbjct: 80 KISIKSKYD--DFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILK 132
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 652 RQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREFVNEIG 707
+Q + + +D + +G G F V K T A+ + + + + K+G+ E NEI
Sbjct: 11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSME--NEIA 68
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYT 757
++ ++H N+V L G L L+ + + LF + K YT
Sbjct: 69 VLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGE----LFDRIVEKGFYT 114
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 25/118 (21%)
Query: 660 NFDAANKIGEGGFGPV--YKGTLSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISAL 712
N+ IG+G F V + L+ G +AVK QL+ S Q + E+ ++ L
Sbjct: 16 NYRLQKTIGKGNFAKVKLARHVLT-GREVAVKIIDKTQLNPTSLQ---KLFREVRIMKIL 71
Query: 713 QHQNLVKLYGCCIEGNQLLLVYEYLENNSL--------------ARALFGNAITKITY 756
H N+VKL+ L LV EY + ARA F ++ + Y
Sbjct: 72 NHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQY 129
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 647 GYFTLRQIKAATNNFDAANKIGEGGFGPVYK----GTLSDGAV--IAVKQLSSKSKQGNR 700
G T RQ + ++++ ++G G F V K GT + A I ++LSS + +R
Sbjct: 1 GMSTFRQ-EDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSR 59
Query: 701 EFVN-EIGMISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
E + E+ ++ ++H N++ L+ ++L+ E + L
Sbjct: 60 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGEL 102
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 667 IGEGGFGPVYKG----TLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+G+G FG V K T + AV + + S+K+K + + E+ ++ L H N++KL+
Sbjct: 30 LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTST-ILREVELLKKLDHPNIMKLFE 88
Query: 723 CCIEGNQLLLVYE 735
+ + +V E
Sbjct: 89 ILEDSSSFYIVGE 101
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 652 RQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREFVNEIG 707
+Q + + +D + +G G F V K T A+ + + + + K+G+ E NEI
Sbjct: 11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSME--NEIA 68
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYT 757
++ ++H N+V L G L L+ + + LF + K YT
Sbjct: 69 VLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGE----LFDRIVEKGFYT 114
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 652 RQIKAATNNFDAANKIGEGGFGPVY----KGTLSDGAVIAVKQLSSKSKQGNREFVNEIG 707
+Q + + +D + +G G F V K T A+ + + + + K+G+ E NEI
Sbjct: 11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSME--NEIA 68
Query: 708 MISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGNAITKITYT 757
++ ++H N+V L G L L+ + + LF + K YT
Sbjct: 69 VLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGE----LFDRIVEKGFYT 114
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 667 IGEGGFGPVYKGTLSDGA----VIAVKQLSSKSKQGNRE-FVNEIGMISALQHQNLVKLY 721
IG+G FG VY G D A A+K LS ++ E F+ E ++ L H N++ L
Sbjct: 29 IGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALI 88
Query: 722 G 722
G
Sbjct: 89 G 89
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 33/214 (15%)
Query: 147 GSIPLEIGDIS-----TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTG------ 195
S+P +I D S LE L +EDN + G L +L+ + LS N+FT
Sbjct: 325 ASLP-KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTN 382
Query: 196 ----SIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDR-LDLQGTSLEGPIPSTIS 250
S+ S ++ NLT+ +I S + +++G+ LD L+ G L G
Sbjct: 383 ETFVSLAHSPLHILNLTKNKI--SKIESDAFSWLGHLEVLDLGLNEIGQELTG---QEWR 437
Query: 251 QLKNLTELRISD---LKGSSSSF---PNLQDMKKMERLILRNCLITGRIPEYIEDMTDLK 304
L+N+ E+ +S L+ + +SF P+LQ + + R+ L+N P + + +L
Sbjct: 438 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM-LRRVALKN---VDSSPSPFQPLRNLT 493
Query: 305 ILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLS 338
ILDLS N + +L+ L+K++ + L +N+L+
Sbjct: 494 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 33/214 (15%)
Query: 147 GSIPLEIGDIS-----TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTG------ 195
S+P +I D S LE L +EDN + G L +L+ + LS N+FT
Sbjct: 320 ASLP-KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTN 377
Query: 196 ----SIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDR-LDLQGTSLEGPIPSTIS 250
S+ S ++ NLT+ +I S + +++G+ LD L+ G L G
Sbjct: 378 ETFVSLAHSPLHILNLTKNKI--SKIESDAFSWLGHLEVLDLGLNEIGQELTG---QEWR 432
Query: 251 QLKNLTELRISD---LKGSSSSF---PNLQDMKKMERLILRNCLITGRIPEYIEDMTDLK 304
L+N+ E+ +S L+ + +SF P+LQ + + R+ L+N P + + +L
Sbjct: 433 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM-LRRVALKN---VDSSPSPFQPLRNLT 488
Query: 305 ILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLS 338
ILDLS N + +L+ L+K++ + L +N+L+
Sbjct: 489 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 667 IGEGGFGPVYKG----TLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+G+G FG V K T + AV + + S+K+K + + E+ ++ L H N++KL+
Sbjct: 30 LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTS-TILREVELLKKLDHPNIMKLFE 88
Query: 723 CCIEGNQLLLVYE 735
+ + +V E
Sbjct: 89 ILEDSSSFYIVGE 101
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 667 IGEGGFGPVYKG----TLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYG 722
+G+G FG V K T + AV + + S+K+K + + E+ ++ L H N++KL+
Sbjct: 30 LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTS-TILREVELLKKLDHPNIMKLFE 88
Query: 723 CCIEGNQLLLVYE 735
+ + +V E
Sbjct: 89 ILEDSSSFYIVGE 101
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 33/214 (15%)
Query: 147 GSIPLEIGDIS-----TLEELVLEDNQLVGPLPENLGNLKSLRRILLSSNNFTG------ 195
S+P +I D S LE L +EDN + G L +L+ + LS N+FT
Sbjct: 315 ASLP-KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTN 372
Query: 196 ----SIPESYGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDR-LDLQGTSLEGPIPSTIS 250
S+ S ++ NLT+ +I S + +++G+ LD L+ G L G
Sbjct: 373 ETFVSLAHSPLHILNLTKNKI--SKIESDAFSWLGHLEVLDLGLNEIGQELTG---QEWR 427
Query: 251 QLKNLTELRISD---LKGSSSSF---PNLQDMKKMERLILRNCLITGRIPEYIEDMTDLK 304
L+N+ E+ +S L+ + +SF P+LQ + + R+ L+N P + + +L
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM-LRRVALKN---VDSSPSPFQPLRNLT 483
Query: 305 ILDLSFNQLTGPVPGILQNLKKIDYIFLTNNSLS 338
ILDLS N + +L+ L+K++ + L +N+L+
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 655 KAATNNFDAANKIGEGGFGPVY---KGTLSDGAVIAVKQLSSKSKQGNREFVN---EIGM 708
KA ++F+ +G+G FG V+ K T D + ++ K+ R+ V E +
Sbjct: 24 KADPSHFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDI 83
Query: 709 ISALQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
++ + H +VKL+ +L L+ ++L L
Sbjct: 84 LADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDL 117
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 661 FDAANKIGEGGFGPVY-KGTLSDGAVIAVKQLSSKSKQGNREFVN-EIGMISALQHQNLV 718
F K+G G FG V+ S G +K ++ Q E + EI ++ +L H N++
Sbjct: 24 FIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNII 83
Query: 719 KLYGCCIEGNQLLLVYEYLENNSL 742
K++ + + + +V E E L
Sbjct: 84 KIFEVFEDYHNMYIVMETCEGGEL 107
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 659 NNFDAANKIGEGGFGPVYKG-TLSDGAVIAVKQLSSKS--KQGNREFV-NEIGMISALQH 714
+F +GEG F V L+ A+K L + K+ +V E ++S L H
Sbjct: 37 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 96
Query: 715 QNLVKLYGCCIEGNQLLLVYEYLENNSLAR 744
VKLY C + +L Y +N L +
Sbjct: 97 PFFVKLYFCFQDDEKLYFGLSYAKNGELLK 126
>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
Length = 317
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQ 697
N + KIG G FG +Y GT ++ G +A+K K+K
Sbjct: 7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH 46
>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
Length = 296
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 659 NNFDAANKIGEGGFGPVYKGT-LSDGAVIAVKQLSSKSKQ 697
N + KIG G FG +Y GT ++ G +A+K K+K
Sbjct: 9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH 48
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna
Length = 759
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 201 YGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRI 260
YG+L +T+ DGS++ G I NF+ + + L LD+QG LE P + ++ I
Sbjct: 100 YGHLMIMTDQDHDGSHIKGLIINFLES-SFLGLLDIQGFLLEFITP--------IIKVSI 150
Query: 261 SDLKGSSSSFPNLQDMKK 278
+ ++ +F N+ D +K
Sbjct: 151 TKPTKNTIAFYNMPDYEK 168
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 298 EDMTDLKILDLSFNQLTGPVPGILQNLKKIDYIFLTNN 335
+ +T L L L NQL G+ NLK + +I+L NN
Sbjct: 85 DKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +A+K QL+ S Q + E+ ++ L
Sbjct: 13 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQ---KLFREVRIMKILN 69
Query: 714 HQNLVKLYGCCIEGNQLLLVYEY 736
H N+VKL+ L L+ EY
Sbjct: 70 HPNIVKLFEVIETEKTLYLIMEY 92
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
Length = 793
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 201 YGNLKNLTEFRIDGSNLTGRIPNFIGNWTKLDRLDLQGTSLEGPIPSTISQLKNLTELRI 260
YG+L +T+ DGS++ G I NF+ + + L LD+QG LE P + ++ I
Sbjct: 110 YGHLMIMTDQDHDGSHIKGLIINFLES-SFLGLLDIQGFLLEFITP--------IIKVSI 160
Query: 261 SDLKGSSSSFPNLQDMKK 278
+ ++ +F N+ D +K
Sbjct: 161 TKPTKNTIAFYNMPDYEK 178
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 659 NNFDAANKIGEGGFGPVYK----GTLSDGAV--IAVKQLSSKSKQGNREFV-NEIGMISA 711
++++ ++G G F V K GT + A I ++LSS + +RE + E+ ++
Sbjct: 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILRE 64
Query: 712 LQHQNLVKLYGCCIEGNQLLLVYEYLENNSL 742
++H N++ L+ ++L+ E + L
Sbjct: 65 IRHPNIITLHDIFENKTDVVLILELVSGGEL 95
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 660 NFDAANKIGEGGFGPVYKGT-LSDGAVIAVK-----QLSSKSKQGNREFVNEIGMISALQ 713
N+ IG+G F V + G +A+K QL+ S Q + E+ ++ L
Sbjct: 16 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQ---KLFREVRIMKILN 72
Query: 714 HQNLVKLYGCCIEGNQLLLVYEY 736
H N+VKL+ L L+ EY
Sbjct: 73 HPNIVKLFEVIETEKTLYLIMEY 95
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 641 GLDLQTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAVIAVK--QLSSKSKQG 698
G+DL T + + + +IG GG V++ + A+K L Q
Sbjct: 10 GVDLGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT 69
Query: 699 NREFVNEIGMISALQHQN--LVKLYGCCIEGNQLLLVYE 735
+ NEI ++ LQ + +++LY I + +V E
Sbjct: 70 LDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME 108
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 641 GLDLQTGYFTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSDGAVIAVK--QLSSKSKQG 698
G+DL T + + + +IG GG V++ + A+K L Q
Sbjct: 10 GVDLGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT 69
Query: 699 NREFVNEIGMISALQHQN--LVKLYGCCIEGNQLLLVYE 735
+ NEI ++ LQ + +++LY I + +V E
Sbjct: 70 LDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME 108
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 97 LAGVIPEEFGNLTFLQEVDLSRNYFNGSLPKSFARLQNLTKLLILGNRLSGSIPLEIGD- 155
L + F NL L+ +DLS N+ +SF L NL +L + N+L S+P I D
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393
Query: 156 ISTLEELVLEDN 167
+++L+++ L N
Sbjct: 394 LTSLQKIWLHTN 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,595,993
Number of Sequences: 62578
Number of extensions: 991932
Number of successful extensions: 3694
Number of sequences better than 100.0: 689
Number of HSP's better than 100.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 2564
Number of HSP's gapped (non-prelim): 994
length of query: 764
length of database: 14,973,337
effective HSP length: 106
effective length of query: 658
effective length of database: 8,340,069
effective search space: 5487765402
effective search space used: 5487765402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)