Query 004278
Match_columns 764
No_of_seqs 482 out of 3162
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 20:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 6E-54 1.3E-58 461.9 30.2 305 106-573 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 1.1E-49 2.4E-54 445.5 24.5 302 115-613 294-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 1.8E-48 4E-53 410.0 24.9 270 129-608 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 3.7E-48 8E-53 404.7 25.2 244 126-576 1-254 (255)
5 cd07497 Peptidases_S8_14 Pepti 100.0 8.7E-48 1.9E-52 410.9 25.3 290 132-572 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 6E-47 1.3E-51 414.9 29.2 313 125-608 2-346 (346)
7 cd07489 Peptidases_S8_5 Peptid 100.0 4.7E-46 1E-50 401.6 28.2 297 123-613 3-303 (312)
8 cd07476 Peptidases_S8_thiazoli 100.0 5.6E-46 1.2E-50 390.1 25.4 248 125-577 2-254 (267)
9 cd07478 Peptidases_S8_CspA-lik 100.0 1.3E-45 2.8E-50 413.6 28.8 402 130-599 1-455 (455)
10 cd07474 Peptidases_S8_subtilis 100.0 9.3E-45 2E-49 388.9 30.1 292 132-606 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 2.4E-45 5.2E-50 391.2 25.0 202 213-573 79-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 4.1E-45 8.9E-50 378.3 24.5 235 135-599 1-239 (239)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1E-43 2.2E-48 373.7 24.5 246 134-573 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 1.9E-43 4.1E-48 372.3 25.0 247 132-573 1-264 (264)
15 KOG1153 Subtilisin-related pro 100.0 2.3E-44 5.1E-49 375.4 15.8 324 33-573 78-461 (501)
16 cd04857 Peptidases_S8_Tripepti 100.0 8.9E-43 1.9E-47 379.0 28.5 221 216-575 182-412 (412)
17 cd07485 Peptidases_S8_Fervidol 100.0 6.7E-43 1.4E-47 369.9 25.2 264 124-571 1-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 2.5E-42 5.4E-47 364.0 26.2 258 132-573 1-264 (264)
19 cd07484 Peptidases_S8_Thermita 100.0 1.4E-41 3.1E-46 357.4 25.6 241 123-575 19-259 (260)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.4E-41 3E-46 356.4 25.0 233 125-574 17-255 (255)
21 cd07490 Peptidases_S8_6 Peptid 100.0 3.3E-41 7.1E-46 353.5 25.5 253 134-573 1-254 (254)
22 cd04847 Peptidases_S8_Subtilis 100.0 9.4E-42 2E-46 364.5 21.2 233 215-573 34-291 (291)
23 cd07494 Peptidases_S8_10 Pepti 100.0 2E-41 4.3E-46 361.1 23.1 254 122-576 10-286 (298)
24 cd07496 Peptidases_S8_13 Pepti 100.0 4.8E-41 1E-45 358.0 25.7 208 213-571 65-285 (285)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 1.3E-40 2.9E-45 356.4 25.2 278 128-573 2-293 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 1.1E-40 2.4E-45 357.1 24.3 268 128-605 3-297 (297)
27 cd07473 Peptidases_S8_Subtilis 100.0 2.1E-40 4.6E-45 348.4 25.9 247 133-573 2-259 (259)
28 cd07498 Peptidases_S8_15 Pepti 100.0 1.2E-40 2.7E-45 346.6 23.8 207 214-571 35-242 (242)
29 cd04843 Peptidases_S8_11 Pepti 100.0 2.1E-40 4.5E-45 349.3 21.2 247 123-573 5-277 (277)
30 cd07477 Peptidases_S8_Subtilis 100.0 1.1E-39 2.3E-44 336.6 24.4 227 134-571 1-229 (229)
31 PF00082 Peptidase_S8: Subtila 100.0 1E-40 2.3E-45 355.0 14.8 277 136-608 1-282 (282)
32 cd07491 Peptidases_S8_7 Peptid 100.0 7.5E-40 1.6E-44 339.6 20.2 219 132-555 2-229 (247)
33 cd07482 Peptidases_S8_Lantibio 100.0 2.1E-39 4.4E-44 347.3 23.8 211 213-571 47-294 (294)
34 cd07492 Peptidases_S8_8 Peptid 100.0 1.9E-38 4E-43 325.7 23.4 222 134-573 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 3.8E-39 8.2E-44 345.8 18.6 250 123-573 29-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 8.3E-38 1.8E-42 329.7 22.4 246 131-573 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 4.9E-37 1.1E-41 328.0 15.4 351 34-608 48-465 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 1.4E-32 2.9E-37 284.4 16.7 197 215-571 33-246 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 2.2E-32 4.8E-37 304.6 19.4 240 218-608 309-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 4.9E-31 1.1E-35 272.4 24.5 197 214-571 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 2.4E-23 5.2E-28 238.4 22.9 251 123-574 130-398 (508)
42 KOG3526 Subtilisin-like propro 99.9 2.9E-23 6.2E-28 211.9 8.6 401 27-629 23-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 9.9E-18 2.1E-22 184.0 15.0 103 247-353 83-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.0 3.2E-09 7E-14 101.0 10.2 101 379-492 25-141 (143)
45 cd02120 PA_subtilisin_like PA_ 99.0 4.4E-09 9.6E-14 97.8 10.8 107 358-467 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 2.7E-09 5.8E-14 91.2 5.4 73 37-109 1-82 (82)
47 KOG3525 Subtilisin-like propro 98.4 1E-06 2.2E-11 98.2 10.9 294 122-608 22-324 (431)
48 COG4934 Predicted protease [Po 98.3 5.2E-06 1.1E-10 99.4 14.0 97 247-347 288-395 (1174)
49 PF06280 DUF1034: Fn3-like dom 98.2 1.5E-05 3.2E-10 72.5 11.6 85 671-757 8-112 (112)
50 cd02124 PA_PoS1_like PA_PoS1_l 98.0 3.2E-05 6.8E-10 72.0 10.3 64 382-445 28-91 (129)
51 cd02129 PA_hSPPL_like PA_hSPPL 97.9 2.4E-05 5.3E-10 71.2 6.6 60 380-444 20-79 (120)
52 cd04818 PA_subtilisin_1 PA_sub 97.8 5E-05 1.1E-09 69.7 7.8 52 393-445 25-76 (118)
53 cd02122 PA_GRAIL_like PA _GRAI 97.8 5.9E-05 1.3E-09 71.0 7.9 51 394-444 43-95 (138)
54 cd02127 PA_hPAP21_like PA_hPAP 97.7 0.00015 3.3E-09 66.3 8.1 50 395-445 21-70 (118)
55 cd04816 PA_SaNapH_like PA_SaNa 97.6 9.6E-05 2.1E-09 68.3 6.2 60 382-444 19-78 (122)
56 cd00538 PA PA: Protease-associ 97.6 0.00018 3.9E-09 66.6 7.5 49 396-444 31-81 (126)
57 PF02225 PA: PA domain; Inter 97.6 4.4E-05 9.5E-10 67.8 3.2 47 395-441 19-65 (101)
58 cd02130 PA_ScAPY_like PA_ScAPY 97.5 0.00074 1.6E-08 62.4 10.8 47 396-443 32-78 (122)
59 cd04813 PA_1 PA_1: Protease-as 97.5 0.0002 4.3E-09 65.4 6.1 48 395-444 27-74 (117)
60 cd04817 PA_VapT_like PA_VapT_l 97.5 0.00022 4.9E-09 66.8 6.3 41 403-443 50-95 (139)
61 cd02132 PA_GO-like PA_GO-like: 97.4 0.00046 1E-08 65.2 7.1 47 395-444 48-94 (139)
62 cd02126 PA_EDEM3_like PA_EDEM3 97.3 0.00031 6.6E-09 65.2 5.5 50 395-445 27-76 (126)
63 cd02123 PA_C_RZF_like PA_C-RZF 97.2 0.00053 1.2E-08 65.9 5.9 50 395-444 50-102 (153)
64 cd02125 PA_VSR PA_VSR: Proteas 97.2 0.001 2.3E-08 61.7 7.6 50 395-444 22-77 (127)
65 cd04819 PA_2 PA_2: Protease-as 96.5 0.0077 1.7E-07 56.0 7.1 59 379-445 22-82 (127)
66 cd04814 PA_M28_1 PA_M28_1: Pro 96.4 0.0075 1.6E-07 56.8 6.5 64 380-445 20-101 (142)
67 PF14874 PapD-like: Flagellar- 96.2 0.1 2.2E-06 46.2 12.3 94 651-760 8-101 (102)
68 cd04820 PA_M28_1_1 PA_M28_1_1: 96.2 0.013 2.8E-07 54.9 6.5 64 380-445 22-97 (137)
69 cd02128 PA_TfR PA_TfR: Proteas 96.2 0.0088 1.9E-07 58.6 5.7 40 405-444 51-90 (183)
70 cd04822 PA_M28_1_3 PA_M28_1_3: 95.9 0.032 6.9E-07 53.2 8.2 64 380-445 20-101 (151)
71 cd02121 PA_GCPII_like PA_GCPII 94.9 0.055 1.2E-06 54.9 6.4 58 380-445 45-107 (220)
72 cd02131 PA_hNAALADL2_like PA_h 94.7 0.039 8.4E-07 52.0 4.3 40 406-445 37-76 (153)
73 PF10633 NPCBM_assoc: NPCBM-as 94.4 0.22 4.8E-06 41.8 7.9 57 671-728 5-62 (78)
74 cd04815 PA_M28_2 PA_M28_2: Pro 92.5 0.14 3E-06 48.0 4.0 40 404-443 34-86 (134)
75 KOG3920 Uncharacterized conser 91.9 0.14 3E-06 47.8 3.0 60 381-446 65-124 (193)
76 PF11614 FixG_C: IG-like fold 90.9 2.5 5.3E-05 38.5 10.3 56 672-729 32-87 (118)
77 cd04821 PA_M28_1_2 PA_M28_1_2: 86.8 2.4 5.2E-05 40.8 7.4 43 402-444 42-103 (157)
78 PF00345 PapD_N: Pili and flag 83.9 19 0.00041 32.8 11.8 53 672-726 15-73 (122)
79 PF06030 DUF916: Bacterial pro 83.7 24 0.00052 32.4 12.2 72 671-747 27-120 (121)
80 KOG2442 Uncharacterized conser 81.2 1.7 3.7E-05 48.2 4.2 40 405-444 91-130 (541)
81 KOG1114 Tripeptidyl peptidase 77.4 1.7 3.6E-05 51.9 2.8 24 129-152 77-100 (1304)
82 PF00635 Motile_Sperm: MSP (Ma 73.6 19 0.0004 31.9 8.1 52 672-727 19-70 (109)
83 COG1470 Predicted membrane pro 72.5 19 0.0004 40.3 9.0 58 671-729 397-455 (513)
84 KOG4628 Predicted E3 ubiquitin 72.0 4.3 9.4E-05 43.9 4.1 50 396-445 63-115 (348)
85 TIGR02745 ccoG_rdxA_fixG cytoc 66.9 22 0.00047 40.2 8.4 55 672-728 347-401 (434)
86 PF07718 Coatamer_beta_C: Coat 57.8 86 0.0019 29.5 9.2 70 671-747 69-139 (140)
87 PF07610 DUF1573: Protein of u 57.3 40 0.00087 24.9 5.7 44 677-724 2-45 (45)
88 PF07705 CARDB: CARDB; InterP 54.1 79 0.0017 27.0 8.2 53 671-727 19-72 (101)
89 PF00927 Transglut_C: Transglu 50.3 1.2E+02 0.0025 26.8 8.8 55 671-728 15-78 (107)
90 COG1470 Predicted membrane pro 42.0 3.4E+02 0.0074 30.8 12.1 56 671-728 284-345 (513)
91 PF05506 DUF756: Domain of unk 37.5 2.2E+02 0.0047 24.3 8.1 48 672-725 19-66 (89)
92 KOG2018 Predicted dinucleotide 33.9 48 0.001 35.3 3.9 79 247-326 137-245 (430)
93 PLN03080 Probable beta-xylosid 32.4 1.1E+02 0.0024 37.6 7.3 54 672-726 685-744 (779)
94 PRK15098 beta-D-glucoside gluc 31.5 1.4E+02 0.003 36.7 8.0 74 650-727 642-728 (765)
95 PF02845 CUE: CUE domain; Int 31.4 44 0.00095 24.2 2.3 25 549-573 5-29 (42)
96 smart00635 BID_2 Bacterial Ig- 30.9 1.4E+02 0.003 24.9 5.7 40 701-749 4-43 (81)
97 PF12690 BsuPI: Intracellular 28.4 3.6E+02 0.0079 22.8 8.2 54 673-728 2-72 (82)
98 PF13940 Ldr_toxin: Toxin Ldr, 26.0 40 0.00087 23.2 1.2 13 540-552 14-26 (35)
99 PF08260 Kinin: Insect kinin p 25.7 32 0.00069 15.9 0.4 6 485-490 3-8 (8)
100 TIGR01451 B_ant_repeat conserv 25.5 2.7E+02 0.0059 21.3 6.0 31 671-702 12-43 (53)
101 PF08821 CGGC: CGGC domain; I 25.1 3.7E+02 0.0079 24.1 7.6 45 248-295 31-76 (107)
102 PF01345 DUF11: Domain of unkn 24.4 1.6E+02 0.0034 24.1 4.9 31 671-702 41-72 (76)
103 PRK15019 CsdA-binding activato 23.7 67 0.0015 30.6 2.7 32 534-566 78-109 (147)
104 TIGR03391 FeS_syn_CsdE cystein 22.5 74 0.0016 30.0 2.7 34 533-567 72-105 (138)
105 PRK15308 putative fimbrial pro 22.4 2.9E+02 0.0063 28.5 7.3 52 673-725 33-99 (234)
106 PF04255 DUF433: Protein of un 21.4 72 0.0016 24.8 2.0 38 532-569 11-54 (56)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6e-54 Score=461.95 Aligned_cols=305 Identities=60% Similarity=0.988 Sum_probs=263.5
Q ss_pred cccCcCCCCcccCCcccCCC--ccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceee
Q 004278 106 RQLHTTRSPQFLGLRNQQGL--WSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKII 183 (764)
Q Consensus 106 ~~~~~~~s~~~~g~~~~~~~--~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kii 183 (764)
++++++++++|+++...+.. |..+.+|+||+|||||||||++||+|++....+++..|.+.|..+..+....||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 47889999999999977664 7889999999999999999999999999888899999999999999888889999999
Q ss_pred eeeeccccccccCCCCCCCCCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeec
Q 004278 184 GARFFSKGHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCW 263 (764)
Q Consensus 184 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 263 (764)
+.++|..++....+. +...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++
T Consensus 81 g~~~~~~~~~~~~~~--------~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 81 GARYFSDGYDAYGGF--------NSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred EEEEcccchhhccCc--------ccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 999999865543221 113445678899999999999999998877777777777889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCccccCCCceE
Q 004278 264 KNAGCFDSDILAAFDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIV 343 (764)
Q Consensus 264 ~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vi 343 (764)
....+..+++++||++|++++++|||||||.. ......+.+..+++.+.++|++||+||||+|+...+.++..||++
T Consensus 153 ~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~---~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 153 PDGGCFGSDILAAIDQAIADGVDVISYSIGGG---SPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred CCCCccHHHHHHHHHHHHHcCCCEEEeCCCCC---CCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 85368899999999999999999999999998 334556788888889999999999999999988888889999999
Q ss_pred EecCCccCCccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchh
Q 004278 344 TVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRV 423 (764)
Q Consensus 344 tVgAst~d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~ 423 (764)
+|||.+
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 999820
Q ss_pred hHHHHHHHcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcE
Q 004278 424 AKGLVVKKAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDL 503 (764)
Q Consensus 424 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI 503 (764)
+||||
T Consensus 236 ---------------------------------------------------------------------------~~~di 240 (307)
T cd04852 236 ---------------------------------------------------------------------------LKPDI 240 (307)
T ss_pred ---------------------------------------------------------------------------Cccce
Confidence 46899
Q ss_pred EcCCCcEEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 504 IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 504 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
+|||.+|++++..... .........|..++|||||||+|||++|||+|+||+|+|.|||++|++||+
T Consensus 241 ~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 241 AAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999875311 111222347999999999999999999999999999999999999999995
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.1e-49 Score=445.51 Aligned_cols=302 Identities=21% Similarity=0.188 Sum_probs=214.4
Q ss_pred cccCCccc--CCCcc--CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccc
Q 004278 115 QFLGLRNQ--QGLWS--ESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSK 190 (764)
Q Consensus 115 ~~~g~~~~--~~~~~--~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~ 190 (764)
..|+++.. ..+|+ .+..|+||+|||||||||++||+|.+.-.... .... |.++-.. +|+..+ +...
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~-----GrdgiDd-D~nG~v---dd~~ 363 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELH-----GRKGIDD-DNNGNV---DDEY 363 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-cccc-----Ccccccc-ccCCcc---cccc
Confidence 34666543 34565 35679999999999999999999985411000 0000 0000000 010000 0011
Q ss_pred cccccCCCCCCCCCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCH
Q 004278 191 GHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFD 270 (764)
Q Consensus 191 g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~ 270 (764)
||++ ......|.|..||||||||||||...++.+ +.||||+|+|+++|+++..+.+..
T Consensus 364 G~nf--------------Vd~~~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~ 421 (639)
T PTZ00262 364 GANF--------------VNNDGGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRL 421 (639)
T ss_pred cccc--------------cCCCCCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccH
Confidence 2222 222345789999999999999998654322 479999999999999987734788
Q ss_pred HHHHHHHHHHHhCCCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCc--------------cc
Q 004278 271 SDILAAFDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS--------------VT 336 (764)
Q Consensus 271 s~i~~ai~~A~~~gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~ 336 (764)
+++++||+||++.|++|||||||+.. +...+..++.+|.++|++||+||||+|+.... ++
T Consensus 422 sdI~~AI~yA~~~GA~VINmSlG~~~------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YP 495 (639)
T PTZ00262 422 GDMFKCFDYCISREAHMINGSFSFDE------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYP 495 (639)
T ss_pred HHHHHHHHHHHHCCCCEEEeccccCC------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCC
Confidence 99999999999999999999999762 24567788889999999999999999864321 11
Q ss_pred c----CCCceEEecCCccCCccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeE
Q 004278 337 N----LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKI 412 (764)
Q Consensus 337 ~----~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gki 412 (764)
. ..|+||+|||...+..
T Consensus 496 aa~s~~~~nVIaVGAv~~d~~----------------------------------------------------------- 516 (639)
T PTZ00262 496 PILSKKLRNVITVSNLIKDKN----------------------------------------------------------- 516 (639)
T ss_pred hhhhccCCCEEEEeeccCCCC-----------------------------------------------------------
Confidence 1 2456777776321110
Q ss_pred EEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCC
Q 004278 413 VICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPN 492 (764)
Q Consensus 413 vl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~ 492 (764)
.....+.||++|..
T Consensus 517 ------------------------------------------------------------------~~~s~s~~Snyg~~ 530 (639)
T PTZ00262 517 ------------------------------------------------------------------NQYSLSPNSFYSAK 530 (639)
T ss_pred ------------------------------------------------------------------CcccccccccCCCC
Confidence 00023456677633
Q ss_pred CCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhcc
Q 004278 493 GLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTA 572 (764)
Q Consensus 493 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA 572 (764)
++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|+++||+++|++||
T Consensus 531 -------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA 590 (639)
T PTZ00262 531 -------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESI 590 (639)
T ss_pred -------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 369999999999998865 799999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccCCCCCCCCCCCCC-CcccccccCCCCcee
Q 004278 573 SIVDNSNQPMTDEATGNASTPYDFGA-GHVNLDRAMDPGLVY 613 (764)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~G~-G~vn~~~Al~~glv~ 613 (764)
.++... +..+|| |+||+.+|++..+-+
T Consensus 591 ~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 591 VQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 876321 112333 899999999866644
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.8e-48 Score=410.03 Aligned_cols=270 Identities=28% Similarity=0.291 Sum_probs=202.5
Q ss_pred CCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCC
Q 004278 129 SDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINE 208 (764)
Q Consensus 129 ~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~ 208 (764)
+++|+||+|+|||||||..||++.+...+.++..+. +..
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~-----------------------~~~------------------ 39 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVN-----------------------VLG------------------ 39 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCccee-----------------------ecc------------------
Confidence 468999999999999999999654322221111110 000
Q ss_pred ccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEE
Q 004278 209 TVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVI 288 (764)
Q Consensus 209 ~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVI 288 (764)
......|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+||++.|++||
T Consensus 40 --~~~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vi 94 (275)
T cd05562 40 --DLDGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG-----GGELDFAAAIRALAAAGADII 94 (275)
T ss_pred --ccCCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC-----CCHHHHHHHHHHHHHcCCCEE
Confidence 01234578899999999995 89999999999873 357889999999999999999
Q ss_pred EeccCCCCCCCCCC-CCCHHHHHHHHhhcC-CcEEEEecCCCCCCCC-ccccCCCceEEecCCccCCccceEEEeCCCeE
Q 004278 289 SISIGGGDGISSPY-YLDPIAIGSYGAASR-GVFVSSSAGNDGPNGM-SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRR 365 (764)
Q Consensus 289 n~SlG~~~g~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~ 365 (764)
|||||.. ..++ ....+..++.++.++ |++||+||||+|+... ..+...|++|+|||.+.+.......
T Consensus 95 n~S~g~~---~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------- 164 (275)
T cd05562 95 VDDIGYL---NEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------- 164 (275)
T ss_pred Eeccccc---CCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-------
Confidence 9999986 3332 334677788888887 9999999999998643 4567899999999965432210000
Q ss_pred EEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 366 LSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 366 ~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
|.. .
T Consensus 165 --------------------------------~~~-------------------------------------------~- 168 (275)
T cd05562 165 --------------------------------DPA-------------------------------------------P- 168 (275)
T ss_pred --------------------------------ccc-------------------------------------------c-
Confidence 000 0
Q ss_pred CCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCC-cEEecccCCCCCCCCC
Q 004278 446 GEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGV-NILAAWTEAVGPTGLD 524 (764)
Q Consensus 446 ~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~ 524 (764)
.......+.|+++||+.. +.+||||+|||. ++.+.+..+
T Consensus 169 -------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~~------- 208 (275)
T cd05562 169 -------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDGD------- 208 (275)
T ss_pred -------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcCC-------
Confidence 000013456788899853 789999999975 445554433
Q ss_pred CCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCCCCCCccccc
Q 004278 525 SDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLD 604 (764)
Q Consensus 525 ~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 604 (764)
.|..++|||||||||||++|||+|++|+|+++|||++|++||+++. .++.+..||||+||+.
T Consensus 209 ------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G~G~vda~ 270 (275)
T cd05562 209 ------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASGSGLVDAD 270 (275)
T ss_pred ------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcCcCcccHH
Confidence 7899999999999999999999999999999999999999999773 2345568999999999
Q ss_pred ccCC
Q 004278 605 RAMD 608 (764)
Q Consensus 605 ~Al~ 608 (764)
+|++
T Consensus 271 ~Av~ 274 (275)
T cd05562 271 RAVA 274 (275)
T ss_pred HHhh
Confidence 9986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=3.7e-48 Score=404.74 Aligned_cols=244 Identities=29% Similarity=0.433 Sum_probs=198.3
Q ss_pred ccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCC
Q 004278 126 WSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGG 205 (764)
Q Consensus 126 ~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~ 205 (764)
|+++++|+||+|||||||||.+||+|.+.. ...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC---------------
Confidence 889999999999999999999999996320 0011110
Q ss_pred CCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCC
Q 004278 206 INETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGV 285 (764)
Q Consensus 206 ~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gv 285 (764)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+...+..++++++|+||+++++
T Consensus 38 ------~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~ 100 (255)
T cd07479 38 ------EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKI 100 (255)
T ss_pred ------CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCC
Confidence 12345778999999999999742 1479999999999999987733667789999999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCc--cccCCCceEEecCCccCCccceEEEeCCC
Q 004278 286 DVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS--VTNLAPWIVTVGAGTIDRNFPAEVRLGDG 363 (764)
Q Consensus 286 dVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgAst~d~~~~~~~~~~~g 363 (764)
||||||||... +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||..
T Consensus 101 ~Vin~S~G~~~-----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~-------------- 161 (255)
T cd07479 101 DVLNLSIGGPD-----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID-------------- 161 (255)
T ss_pred CEEEeeccCCC-----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec--------------
Confidence 99999999862 234567777778889999999999999975443 456778999999832
Q ss_pred eEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccC
Q 004278 364 RRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGI 443 (764)
Q Consensus 364 ~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 443 (764)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCC----CCCCCCCcEEcCCCcEEecccCCCC
Q 004278 444 SNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGL----NPEILKPDLIAPGVNILAAWTEAVG 519 (764)
Q Consensus 444 ~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~ 519 (764)
..+.++.|||+|++.. ..+++||||.|||.+|+++...+
T Consensus 162 -----------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~-- 204 (255)
T cd07479 162 -----------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG-- 204 (255)
T ss_pred -----------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC--
Confidence 1135789999997521 24778999999999999886644
Q ss_pred CCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCC----CCCHHHHHHHHHhcccccc
Q 004278 520 PTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP----DWSPAAIRSAMMTTASIVD 576 (764)
Q Consensus 520 ~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P----~~sp~~ik~~L~~TA~~~~ 576 (764)
.|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 205 -----------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 205 -----------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred -----------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 788999999999999999999999999 7999999999999999863
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.7e-48 Score=410.86 Aligned_cols=290 Identities=31% Similarity=0.338 Sum_probs=190.3
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccc
Q 004278 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (764)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (764)
|+||+|+|||||||.+||+|.++... .|.. .|+ +..+ +..+++...+ .
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~------~~~g~d~~~~-------------~ 48 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAY------LLPGMDKWGG-------------F 48 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC---cCCC------ccCCcCCCCC-------------c
Confidence 79999999999999999999643110 0000 000 0001 1112221111 1
Q ss_pred cCCCCCCCCChhhhHHHhcccCCCCCCccccc-cceeeeecCCCcEEEEEeecCCCCCCHHHHHH-------HHHHH--H
Q 004278 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYA-AGVAKGVAPKARLAVYKVCWKNAGCFDSDILA-------AFDAA--V 281 (764)
Q Consensus 212 ~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~-------ai~~A--~ 281 (764)
...+.|.+||||||||||||+.....+.+++. ...+.||||+|+|+.+|+|.....+....+.. +++|+ .
T Consensus 49 ~~~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 128 (311)
T cd07497 49 YVIMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTG 128 (311)
T ss_pred cCCCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhcc
Confidence 13467899999999999999865433322211 22368999999999999997542233333333 33443 3
Q ss_pred hCCCcEEEeccCCCCCCCCCC--CCCHHHHHHHH-hhcCCcEEEEecCCCCCCCC--ccccCCCceEEecCCccCCccce
Q 004278 282 NDGVDVISISIGGGDGISSPY--YLDPIAIGSYG-AASRGVFVSSSAGNDGPNGM--SVTNLAPWIVTVGAGTIDRNFPA 356 (764)
Q Consensus 282 ~~gvdVIn~SlG~~~g~~~~~--~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgAst~d~~~~~ 356 (764)
++++||||||||........+ ..+........ +.++|+++|+||||+|+... +.+..++++|+|||++.....+.
T Consensus 129 ~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~ 208 (311)
T cd07497 129 GPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF 208 (311)
T ss_pred CCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch
Confidence 679999999999862100101 11233333322 24899999999999998644 45568899999999653211000
Q ss_pred EEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceE
Q 004278 357 EVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVG 436 (764)
Q Consensus 357 ~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 436 (764)
. ...+
T Consensus 209 ~-------------------------~~~~-------------------------------------------------- 213 (311)
T cd07497 209 Y-------------------------LFGY-------------------------------------------------- 213 (311)
T ss_pred h-------------------------hhcc--------------------------------------------------
Confidence 0 0000
Q ss_pred EEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccC
Q 004278 437 MILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTE 516 (764)
Q Consensus 437 ~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 516 (764)
.....+.++.||||||+.. +++||||+|||++|+++.+.
T Consensus 214 ---------------------------------------~~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG~~i~s~~~~ 252 (311)
T cd07497 214 ---------------------------------------LPGGSGDVVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRV 252 (311)
T ss_pred ---------------------------------------ccCCCCCccccccCCCCcc--cCCCCceeccCcceEeeccc
Confidence 0012346899999999964 89999999999999998765
Q ss_pred CCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCC------CCCHHHHHHHHHhcc
Q 004278 517 AVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP------DWSPAAIRSAMMTTA 572 (764)
Q Consensus 517 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P------~~sp~~ik~~L~~TA 572 (764)
..... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 253 ~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 253 LDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 42100 011123699999999999999999999999886 589999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=6e-47 Score=414.86 Aligned_cols=313 Identities=30% Similarity=0.414 Sum_probs=233.5
Q ss_pred CccCCC-CCCCcEEEEEecCCCCCCCCccCCCCCCCCC-----cceeeeecccccCcccCCceeeeeeeccccccccCCC
Q 004278 125 LWSESD-YGSDVIIGVFDTGIWPERRSFSDLNIGSIPS-----KWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGS 198 (764)
Q Consensus 125 ~~~~~~-~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~ 198 (764)
+|+++. +|+||+|+||||||+++||+|.+....+... .+...+.. -...+++.|++..++|.++...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCc----
Confidence 688887 9999999999999999999998764432211 11221111 1223567788887777763211
Q ss_pred CCCCCCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecC--CCCCCHHHHHHH
Q 004278 199 AGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWK--NAGCFDSDILAA 276 (764)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~s~i~~a 276 (764)
.....|..+|||||||||+|...+... ...+.||||+|+|+.+|+++. ...+....+++|
T Consensus 75 -------------~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~a 136 (346)
T cd07475 75 -------------ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKA 136 (346)
T ss_pred -------------cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHH
Confidence 112457899999999999998754221 123689999999999999974 324778889999
Q ss_pred HHHHHhCCCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCc----------------cccCCC
Q 004278 277 FDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS----------------VTNLAP 340 (764)
Q Consensus 277 i~~A~~~gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------~~~~~p 340 (764)
++++++.|++|||||||... ........+..++.++.++|++||+||||+|..... .+...+
T Consensus 137 i~~a~~~g~~Vin~S~G~~~--~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTA--GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214 (346)
T ss_pred HHHHHHcCCCEEEECCCcCC--CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCC
Confidence 99999999999999999984 222445677788888999999999999999865432 122345
Q ss_pred ceEEecCCccCCccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCC
Q 004278 341 WIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS 420 (764)
Q Consensus 341 ~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~ 420 (764)
++|+||+....
T Consensus 215 ~~i~Vga~~~~--------------------------------------------------------------------- 225 (346)
T cd07475 215 DVLTVASANKK--------------------------------------------------------------------- 225 (346)
T ss_pred CceEEeecccc---------------------------------------------------------------------
Confidence 66666653200
Q ss_pred chhhHHHHHHHcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCC
Q 004278 421 PRVAKGLVVKKAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILK 500 (764)
Q Consensus 421 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lK 500 (764)
......+.++.||+|||+.. .++|
T Consensus 226 ------------------------------------------------------~~~~~~~~~~~~S~~G~~~~--~~~~ 249 (346)
T cd07475 226 ------------------------------------------------------VPNPNGGQMSGFSSWGPTPD--LDLK 249 (346)
T ss_pred ------------------------------------------------------cCCCCCCccCCCcCCCCCcc--cCcC
Confidence 00112346789999999854 8899
Q ss_pred CcEEcCCCcEEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhh----CCCCCHHH----HHHHHHhcc
Q 004278 501 PDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSA----HPDWSPAA----IRSAMMTTA 572 (764)
Q Consensus 501 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~----~P~~sp~~----ik~~L~~TA 572 (764)
|||+|||.+|+++...+ .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||
T Consensus 250 pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta 316 (346)
T cd07475 250 PDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTA 316 (346)
T ss_pred CeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999987764 7899999999999999999999997 79999877 788899999
Q ss_pred ccccCCCCCCCccCCCCCCCCCCCCCCcccccccCC
Q 004278 573 SIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMD 608 (764)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 608 (764)
.+.... .....++.+.++|+|+||+.+|++
T Consensus 317 ~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 317 TPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred Cccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 853211 122456777899999999999985
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.7e-46 Score=401.64 Aligned_cols=297 Identities=35% Similarity=0.428 Sum_probs=229.8
Q ss_pred CCCccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCC
Q 004278 123 QGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPI 202 (764)
Q Consensus 123 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 202 (764)
+.+|+.+++|+||+|||||+|||++||+|.+.-.+ +.++.+.++|......
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~-------- 53 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD-------- 53 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc--------
Confidence 46899999999999999999999999999753111 1122333333321000
Q ss_pred CCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHh
Q 004278 203 GGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN 282 (764)
Q Consensus 203 ~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~ 282 (764)
..+...+...+.|..+|||||||+|+|+..+ . .+.||||+|+|+.+|++..........++++|++|++
T Consensus 54 --~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~----~-----~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~ 122 (312)
T cd07489 54 --GTNPPVPDDDPMDCQGHGTHVAGIIAANPNA----Y-----GFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYE 122 (312)
T ss_pred --cccCCCCCCCCCCCCCcHHHHHHHHhcCCCC----C-----ceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 0001223345677899999999999998654 1 1479999999999999986634667778999999999
Q ss_pred CCCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC---ccccCCCceEEecCCccCCccceEEE
Q 004278 283 DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVR 359 (764)
Q Consensus 283 ~gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAst~d~~~~~~~~ 359 (764)
++++|||||||... .+..+.+...+.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 123 ~~~~iIn~S~g~~~----~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------- 188 (312)
T cd07489 123 DGADVITASLGGPS----GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------- 188 (312)
T ss_pred cCCCEEEeCCCcCC----CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------
Confidence 99999999999873 233467777888889999999999999987543 3356678888888721
Q ss_pred eCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEE
Q 004278 360 LGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMIL 439 (764)
Q Consensus 360 ~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 439 (764)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCC
Q 004278 440 ANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVG 519 (764)
Q Consensus 440 ~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 519 (764)
+.||++||+.. ...||||+|||.+++++++....
T Consensus 189 --------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~~~~~~~ 222 (312)
T cd07489 189 --------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILSTYPLAGG 222 (312)
T ss_pred --------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEeeeCCCC
Confidence 56899999864 78999999999999999877532
Q ss_pred CCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhC-CCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCCCCC
Q 004278 520 PTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH-PDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGA 598 (764)
Q Consensus 520 ~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~-P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 598 (764)
.|..++|||||||+|||++||++|++ |.+++.+||++|++||..+...+..... ....+..++|+
T Consensus 223 -----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~~~~~~~~~G~ 288 (312)
T cd07489 223 -----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---PDLAPVAQQGA 288 (312)
T ss_pred -----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---cCCCCHhhcCc
Confidence 58999999999999999999999999 9999999999999999987643321111 11356679999
Q ss_pred CcccccccCCCCcee
Q 004278 599 GHVNLDRAMDPGLVY 613 (764)
Q Consensus 599 G~vn~~~Al~~glv~ 613 (764)
|+||+.+|++..-.+
T Consensus 289 G~vn~~~a~~~~~~~ 303 (312)
T cd07489 289 GLVNAYKALYATTTL 303 (312)
T ss_pred ceeeHHHHhcCCccc
Confidence 999999999955443
No 8
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=5.6e-46 Score=390.11 Aligned_cols=248 Identities=27% Similarity=0.323 Sum_probs=202.9
Q ss_pred CccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCC
Q 004278 125 LWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGG 204 (764)
Q Consensus 125 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 204 (764)
+|..+++|+||+|||||+|||++||+|.+..+.+. ..+.
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~--------------- 40 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYA--------------- 40 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCcc---------------
Confidence 69999999999999999999999999975421110 0000
Q ss_pred CCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCC-CCHHHHHHHHHHHHhC
Q 004278 205 GINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG-CFDSDILAAFDAAVND 283 (764)
Q Consensus 205 ~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~s~i~~ai~~A~~~ 283 (764)
.......|..+|||||||+|+|+... .+.||||+|+|+.+|++..... ++..++++||++|+++
T Consensus 41 -----~~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~ 105 (267)
T cd07476 41 -----AAACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQ 105 (267)
T ss_pred -----ccCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 00123456789999999999987532 2579999999999999986523 4467899999999999
Q ss_pred CCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCccccCCCceEEecCCccCCccceEEEeCCC
Q 004278 284 GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDG 363 (764)
Q Consensus 284 gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~~~~g 363 (764)
|+||||||||... ........+..++.+|.++|++||+||||+|.....++...|++|+|||...
T Consensus 106 g~~VIN~S~G~~~--~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 170 (267)
T cd07476 106 GAHIINISGGRLT--QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD------------- 170 (267)
T ss_pred CCCEEEecCCcCC--CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC-------------
Confidence 9999999999763 2233456678888889999999999999999887788888999999998321
Q ss_pred eEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccC
Q 004278 364 RRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGI 443 (764)
Q Consensus 364 ~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 443 (764)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCC
Q 004278 444 SNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGL 523 (764)
Q Consensus 444 ~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 523 (764)
.+.++.||++|+.. .||||+|||.+|+++.+.+
T Consensus 171 ------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~------ 203 (267)
T cd07476 171 ------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG------ 203 (267)
T ss_pred ------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC------
Confidence 12457899999863 3789999999999998765
Q ss_pred CCCCccceeEEeccccchhhhHHHHHHHHhhhCCC----CCHHHHHHHHHhccccccC
Q 004278 524 DSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD----WSPAAIRSAMMTTASIVDN 577 (764)
Q Consensus 524 ~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~----~sp~~ik~~L~~TA~~~~~ 577 (764)
.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 204 -------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 204 -------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred -------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 7999999999999999999999999887 9999999999999998854
No 9
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.3e-45 Score=413.59 Aligned_cols=402 Identities=25% Similarity=0.299 Sum_probs=233.8
Q ss_pred CCCCCcEEEEEecCCCCCCCCccC-CCCCCCCCcceeeeecccccCcccCCceeeeeeeccc-cccccCCCCCCCCCCCC
Q 004278 130 DYGSDVIIGVFDTGIWPERRSFSD-LNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSK-GHEAAGGSAGPIGGGIN 207 (764)
Q Consensus 130 ~~G~gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-g~~~~~~~~~~~~~~~~ 207 (764)
.+|+||+|||||||||+.||+|++ ++.+++...|++....+..- ....+...+.. ..+......
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~-------- 66 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASD-------- 66 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcC--------
Confidence 479999999999999999999997 56789999999877643211 11111111111 000000000
Q ss_pred CccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCC----------CCHHHHHHHH
Q 004278 208 ETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG----------CFDSDILAAF 277 (764)
Q Consensus 208 ~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g----------~~~s~i~~ai 277 (764)
.+.+.....|..||||||||||||+..++.. +.||||+|+|+++|++..... +..++++.||
T Consensus 67 ~p~~~~~~~D~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai 138 (455)
T cd07478 67 NPYDIVPSRDENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAI 138 (455)
T ss_pred CccccCcCCCCCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHH
Confidence 0223345678999999999999999765332 579999999999999987722 5678999999
Q ss_pred HHHHhC-----CCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCCCCCCCCccccCCCceEEecCCccC
Q 004278 278 DAAVND-----GVDVISISIGGGDGISSPYYLDPIAIGSYGAASR-GVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTID 351 (764)
Q Consensus 278 ~~A~~~-----gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d 351 (764)
+|+++. .+.|||||||...| .....++++.++..+.++ |++||+||||+|....+...... ..+
T Consensus 139 ~~~~~~a~~~~~p~VInlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~---~~~----- 208 (455)
T cd07478 139 KYLYDKALELNKPLVINISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV---PNG----- 208 (455)
T ss_pred HHHHHHHHHhCCCeEEEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec---cCC-----
Confidence 999874 46799999998753 223456788787777665 99999999999986554432100 000
Q ss_pred CccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCC----------c-------cccccccC-CCCCCCccceeEE
Q 004278 352 RNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSG----------V-------LSASLCME-NSLDPNLVRGKIV 413 (764)
Q Consensus 352 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~----------~-------~~~~~C~~-~~~~~~~~~gkiv 413 (764)
..-...+..+.++......+|...+ ..-.+.++...... . .....|.. ...++..-...|.
T Consensus 209 ~~~~ie~~v~~~~~~~~~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~ 287 (455)
T cd07478 209 ETKTVELNVGEGEKGFNLEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIF 287 (455)
T ss_pred ceEEEEEEECCCCcceEEEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEE
Confidence 0000111222221111111111110 00000111000000 0 00000000 0111111222222
Q ss_pred EEecC----CCchhhHHHHHHHcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEeccee------eccc-CCCe
Q 004278 414 ICDRG----SSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTI------LGIK-PAPV 482 (764)
Q Consensus 414 l~~~g----~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~------~~~~-~~~~ 482 (764)
+.... .+.+.-..... ..|-.-+++....... .-..|+.. .+..+++.+.+. .... ....
T Consensus 288 i~~~~~~~GiW~i~~~~~~~-~~g~~~~Wlp~~~~~~------~~t~f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~ 358 (455)
T cd07478 288 IRFKNIKPGIWKIRLTGVSI-TDGRFDAWLPSRGLLS------ENTRFLEP--DPYTTLTIPGTARSVITVGAYNQNNNS 358 (455)
T ss_pred EEccCCCccceEEEEEeccC-CCceEEEEecCcCcCC------CCCEeecC--CCCceEecCCCCCCcEEEEEEeCCCCc
Confidence 22110 00000000000 0111111221111100 00122322 334455555431 1112 2346
Q ss_pred eecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhC------
Q 004278 483 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH------ 556 (764)
Q Consensus 483 ~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~------ 556 (764)
++.||||||+.. +++||||+|||++|+++++.+ .|..++|||||||||||++|||+|.+
T Consensus 359 ~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~ 423 (455)
T cd07478 359 IAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGND 423 (455)
T ss_pred ccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCC
Confidence 999999999964 899999999999999999865 79999999999999999999999864
Q ss_pred CCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCCCCCC
Q 004278 557 PDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAG 599 (764)
Q Consensus 557 P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 599 (764)
|.|++++||++|++||+++. ...+++.+||||
T Consensus 424 p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 424 PYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 66799999999999999874 234677899998
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.3e-45 Score=388.87 Aligned_cols=292 Identities=39% Similarity=0.521 Sum_probs=217.7
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccc-cCCCCCCCCCCCCCcc
Q 004278 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEA-AGGSAGPIGGGINETV 210 (764)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~-~~~~~~~~~~~~~~~~ 210 (764)
|+||+|||||+||+++||+|.+.. ..+.++...++|...... ...... ....
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 53 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPY------PSPL 53 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCccccccc------cccc
Confidence 899999999999999999997531 123344444444431100 000000 0000
Q ss_pred ccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 004278 211 EFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISI 290 (764)
Q Consensus 211 ~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~ 290 (764)
......|..+|||||||+|+|...+.. .+.|+||+|+|+.+|+++....+...++++||+++++++++||||
T Consensus 54 ~~~~~~~~~~HGT~vAgiiag~~~n~~--------~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~ 125 (295)
T cd07474 54 GDASAGDATGHGTHVAGIIAGNGVNVG--------TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINL 125 (295)
T ss_pred ccCCCCCCCCcHHHHHHHHhcCCCccC--------ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 112355789999999999999865532 257999999999999998553478889999999999999999999
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCcc--ccCCCceEEecCCccCCccceEEEeCCCeEEEe
Q 004278 291 SIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV--TNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSG 368 (764)
Q Consensus 291 SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g 368 (764)
|||... . ...+.+..++.++.++|+++|+||||+|...... +...+++|+|||+.....
T Consensus 126 S~g~~~---~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------- 186 (295)
T cd07474 126 SLGSSV---N-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------- 186 (295)
T ss_pred CCCCCC---C-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------
Confidence 999872 2 2356788888899999999999999998765543 567899999999531000
Q ss_pred EEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCc
Q 004278 369 VSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG 448 (764)
Q Consensus 369 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 448 (764)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCc
Q 004278 449 LVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLR 528 (764)
Q Consensus 449 ~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 528 (764)
........|+++|+.. ....+||||+|||.+|++++.....
T Consensus 187 -----------------------------~~~~~~~~~~s~~~~~-~~~~~kpdv~apG~~i~~~~~~~~~--------- 227 (295)
T cd07474 187 -----------------------------AEADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGSGT--------- 227 (295)
T ss_pred -----------------------------CCCCceeccCCCCCCC-CCCCcCCCEECCcCceEeeccCCCC---------
Confidence 0111334455554432 3588999999999999999876321
Q ss_pred cceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCCCCCCccccccc
Q 004278 529 KTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRA 606 (764)
Q Consensus 529 ~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 606 (764)
.|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...++..+|+|+||+.+|
T Consensus 228 --~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 228 --GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred --ceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcceeccccC
Confidence 78999999999999999999999999999999999999999998754331 112456899999999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.4e-45 Score=391.22 Aligned_cols=202 Identities=31% Similarity=0.408 Sum_probs=162.4
Q ss_pred CCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEecc
Q 004278 213 MSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISI 292 (764)
Q Consensus 213 ~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~Sl 292 (764)
..+.+..+|||||||||+|...++.+ +.||||+|+|+.+|++... ....+++++||+||++.|++||||||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g-~~~~~~i~~Ai~~a~~~g~~IiN~S~ 149 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNG-DERDKDIANAIRYAVDNGAKVINMSF 149 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCC-CcCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 34567899999999999998654422 4799999999999998654 56778899999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCc---cc--------cCCCceEEecCCccCCccceEEEeC
Q 004278 293 GGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS---VT--------NLAPWIVTVGAGTIDRNFPAEVRLG 361 (764)
Q Consensus 293 G~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~--------~~~p~vitVgAst~d~~~~~~~~~~ 361 (764)
|.. ... ....+..++..|.++|+++|+||||+|..... ++ ...+++|+|||.....
T Consensus 150 G~~---~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 150 GKS---FSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred CCC---CCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 976 222 23456777788899999999999999864321 11 1235666666632110
Q ss_pred CCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEec
Q 004278 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (764)
Q Consensus 362 ~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 441 (764)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCC
Q 004278 442 GISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPT 521 (764)
Q Consensus 442 ~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 521 (764)
....++.||++|+. +|||.|||.+|+++.+.+
T Consensus 217 -------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~~---- 248 (291)
T cd07483 217 -------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYSTTPDN---- 248 (291)
T ss_pred -------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEeccCcC----
Confidence 01146889999985 479999999999997765
Q ss_pred CCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 522 GLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 522 ~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 249 ---------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 249 ---------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.1e-45 Score=378.29 Aligned_cols=235 Identities=32% Similarity=0.421 Sum_probs=192.1
Q ss_pred cEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCC
Q 004278 135 VIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMS 214 (764)
Q Consensus 135 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 214 (764)
|+|||||||||.+||+|.+.. +..+++.. ..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~----------------------~~ 31 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG----------------------PG 31 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC----------------------CC
Confidence 789999999999999996431 11111110 13
Q ss_pred CCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCC---CCCHHHHHHHHHHHHhCCCcEEEec
Q 004278 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA---GCFDSDILAAFDAAVNDGVDVISIS 291 (764)
Q Consensus 215 ~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~s~i~~ai~~A~~~gvdVIn~S 291 (764)
..|..+|||||||||+|+.... .|+||+|+|+.+|++.... .++..++++||+||++.|++|||||
T Consensus 32 ~~~~~~HGT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 100 (239)
T cd05561 32 APAPSAHGTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNIS 100 (239)
T ss_pred CCCCCCCHHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 4567899999999999985332 5999999999999998641 2677889999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC-CccccCCCceEEecCCccCCccceEEEeCCCeEEEeEE
Q 004278 292 IGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVS 370 (764)
Q Consensus 292 lG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~ 370 (764)
||.. . ...+..++.++.++|+++|+||||+|+.. ..+++..|++|+|++...
T Consensus 101 ~g~~---~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------- 153 (239)
T cd05561 101 LAGP---P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------- 153 (239)
T ss_pred CCCC---C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------
Confidence 9976 2 34677778889999999999999999763 456777889999988321
Q ss_pred eecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCccc
Q 004278 371 LYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV 450 (764)
Q Consensus 371 ~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 450 (764)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccc
Q 004278 451 GDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKT 530 (764)
Q Consensus 451 ~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 530 (764)
.+.++.||++|+. +||.|||.+|+++.+.+
T Consensus 154 -----------------------------~~~~~~~s~~g~~--------~di~ApG~~i~~~~~~~------------- 183 (239)
T cd05561 154 -----------------------------RGRLYREANRGAH--------VDFAAPGVDVWVAAPGG------------- 183 (239)
T ss_pred -----------------------------CCCccccCCCCCc--------ceEEccccceecccCCC-------------
Confidence 1256789999986 49999999999987654
Q ss_pred eeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCCCCCC
Q 004278 531 EFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAG 599 (764)
Q Consensus 531 ~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 599 (764)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .++.+..||||
T Consensus 184 ~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 184 GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999999773 34556689998
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-43 Score=373.73 Aligned_cols=246 Identities=32% Similarity=0.399 Sum_probs=194.6
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccC
Q 004278 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (764)
Q Consensus 134 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 213 (764)
||+||||||||+++||+|... ...++.++++.++|.+.. .
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~--------------------~~~~~~~i~~~~~~~~~~--------------------~ 40 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK--------------------HLFKNLRILGEYDFVDNS--------------------N 40 (261)
T ss_pred CCEEEEEccCCCccCcchhhh--------------------ccccCCceeeeecCccCC--------------------C
Confidence 799999999999999999521 111345677766665521 1
Q ss_pred C-CCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCC--CCHHHHHHHHHHHHhCCCcEEEe
Q 004278 214 S-PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGVDVISI 290 (764)
Q Consensus 214 ~-~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~s~i~~ai~~A~~~gvdVIn~ 290 (764)
. ..|..+|||||||+|+|+.. +.+.||||+|+|+.+|+...... ....+++.|+++|.+.|++||||
T Consensus 41 ~~~~~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~ 110 (261)
T cd07493 41 NTNYTDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISS 110 (261)
T ss_pred CCCCCCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 1 35788999999999999753 22589999999999998764311 34567889999999999999999
Q ss_pred ccCCCCCCCC---------CCCCCHHHHHHHHhhcCCcEEEEecCCCCCC---CCccccCCCceEEecCCccCCccceEE
Q 004278 291 SIGGGDGISS---------PYYLDPIAIGSYGAASRGVFVSSSAGNDGPN---GMSVTNLAPWIVTVGAGTIDRNFPAEV 358 (764)
Q Consensus 291 SlG~~~g~~~---------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgAst~d~~~~~~~ 358 (764)
|||....... ......+..++..+.++|+++|+||||+|.. ....+...|++|+|||..
T Consensus 111 S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~--------- 181 (261)
T cd07493 111 SLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD--------- 181 (261)
T ss_pred CCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec---------
Confidence 9998731010 0012356777888899999999999999977 345677889999999831
Q ss_pred EeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEE
Q 004278 359 RLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMI 438 (764)
Q Consensus 359 ~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i 438 (764)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCC
Q 004278 439 LANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAV 518 (764)
Q Consensus 439 ~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 518 (764)
..+.++.||++||+. ++++||||+|||.+|++....+
T Consensus 182 ----------------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~~- 218 (261)
T cd07493 182 ----------------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGDG- 218 (261)
T ss_pred ----------------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCCC-
Confidence 112568899999985 4899999999999999855443
Q ss_pred CCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 519 GPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 519 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 219 ------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 219 ------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.9e-43 Score=372.30 Aligned_cols=247 Identities=33% Similarity=0.400 Sum_probs=194.9
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccc
Q 004278 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (764)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (764)
|+||+||||||||+++||+|.+. |++... . ++.....+.+ . ...
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~--~---------~~~~~~~~~d---~--------------~~~ 44 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG--G---------SADHDYNWFD---P--------------VGN 44 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC--C---------Cccccccccc---C--------------CCC
Confidence 89999999999999999999764 111000 0 0000000000 0 111
Q ss_pred cCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHh---------
Q 004278 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN--------- 282 (764)
Q Consensus 212 ~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~--------- 282 (764)
...+.|..+|||||||||+|...... ..||||+|+|+.+|++... ++...+++++++++++
T Consensus 45 ~~~~~d~~~HGT~vagii~g~~~~~~---------~~GvAp~a~i~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (264)
T cd07481 45 TPLPYDDNGHGTHTMGTMVGNDGDGQ---------QIGVAPGARWIACRALDRN-GGNDADYLRCAQWMLAPTDSAGNPA 114 (264)
T ss_pred CCCCCCCCCchhhhhhheeecCCCCC---------ceEECCCCeEEEEEeecCC-CCcHHHHHHHHHHHHhccccccccc
Confidence 24566789999999999998754321 2699999999999999887 6888899999999975
Q ss_pred ---CCCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCc---cccCCCceEEecCCccCCccce
Q 004278 283 ---DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS---VTNLAPWIVTVGAGTIDRNFPA 356 (764)
Q Consensus 283 ---~gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgAst~d~~~~~ 356 (764)
.+++|||||||... . ....+..++..+.++|++||+||||++..... .+...|++|+|||.+.
T Consensus 115 ~~~~~~~Iin~S~G~~~---~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 115 DPDLAPDVINNSWGGPS---G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccCCeEEEeCCCcCC---C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 78999999999872 2 24556667777888999999999999865432 5677889999998321
Q ss_pred EEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceE
Q 004278 357 EVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVG 436 (764)
Q Consensus 357 ~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 436 (764)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccC
Q 004278 437 MILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTE 516 (764)
Q Consensus 437 ~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 516 (764)
.+.++.||++||... +.+||||+|||.+|+++++.
T Consensus 184 -------------------------------------------~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i~s~~~~ 218 (264)
T cd07481 184 -------------------------------------------NDVLADFSSRGPSTY--GRIKPDISAPGVNIRSAVPG 218 (264)
T ss_pred -------------------------------------------CCCCccccCCCCCCC--CCcCceEEECCCCeEEecCC
Confidence 125688999999864 78999999999999999877
Q ss_pred CCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCC--CCHHHHHHHHHhccc
Q 004278 517 AVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD--WSPAAIRSAMMTTAS 573 (764)
Q Consensus 517 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~--~sp~~ik~~L~~TA~ 573 (764)
+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 ~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 G-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred C-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 5 7899999999999999999999999999 999999999999985
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-44 Score=375.44 Aligned_cols=324 Identities=28% Similarity=0.433 Sum_probs=255.6
Q ss_pred CCCceEEEEeCCCCCCCCCcchHHHHHhhhcCC----------------------ceeEEEec---ceeeEEEEEcCHHH
Q 004278 33 QTVKTFIFRIDSQSKPSIFPTHYHWYSSEFASP----------------------VQILHTYD---TVFHGFSATLSPDQ 87 (764)
Q Consensus 33 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~y~---~~~ng~s~~~~~~~ 87 (764)
..+.+|||.|++....+....|.+|++...+.. ..+.+.|. .+|+|+.-..+.+-
T Consensus 78 ~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 347899999997766666677777776544321 11334443 37788888899999
Q ss_pred HHHHhCCCCeEEEEeccccccCc-----CCCCcccCCcccCC-------Cc----cCCCCCCCcEEEEEecCCCCCCCCc
Q 004278 88 AASLSRHPSVLAVIEDQRRQLHT-----TRSPQFLGLRNQQG-------LW----SESDYGSDVIIGVFDTGIWPERRSF 151 (764)
Q Consensus 88 ~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~~~~G~gv~VgVIDtGid~~Hp~f 151 (764)
...++++|-++.++++..++... .+....|||.++.. -| ..-..|+||...|+||||+.+||+|
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999998776644 33334466655421 12 1234799999999999999999999
Q ss_pred cCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCCCCCCCCChhhhHHHhcc
Q 004278 152 SDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAAG 231 (764)
Q Consensus 152 ~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~AG 231 (764)
.++. .| | ..+. ......|++||||||||+|++
T Consensus 238 egRa------~w-G-----a~i~------------------------------------~~~~~~D~nGHGTH~AG~I~s 269 (501)
T KOG1153|consen 238 EGRA------IW-G-----ATIP------------------------------------PKDGDEDCNGHGTHVAGLIGS 269 (501)
T ss_pred ccce------ec-c-----cccC------------------------------------CCCcccccCCCcceeeeeeec
Confidence 8642 22 1 1111 012346899999999999998
Q ss_pred cCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCCCC
Q 004278 232 RHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND---------GVDVISISIGGGDGISSPY 302 (764)
Q Consensus 232 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~---------gvdVIn~SlG~~~g~~~~~ 302 (764)
+. .|||.+++|+++||+++++.+..+++++++|++++. +..|.|||+|+.
T Consensus 270 Kt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~------- 328 (501)
T KOG1153|consen 270 KT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF------- 328 (501)
T ss_pred cc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-------
Confidence 84 699999999999999999458999999999999986 467999999998
Q ss_pred CCCHHHHHHHHhhcCCcEEEEecCCCCCCCC-ccccCCCceEEecCCccCCccceEEEeCCCeEEEeEEeecCCCCCCce
Q 004278 303 YLDPIAIGSYGAASRGVFVSSSAGNDGPNGM-SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKM 381 (764)
Q Consensus 303 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 381 (764)
..-++..|+.+|.+.||++++||||+..+.+ +.|+.+..+|||||+|..
T Consensus 329 ~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------------------ 378 (501)
T KOG1153|consen 329 RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------------------ 378 (501)
T ss_pred ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc------------------------------
Confidence 3457888999999999999999999998876 456788999999996421
Q ss_pred eeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccHHHHHHHHHcC
Q 004278 382 YPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAVKAYISST 461 (764)
Q Consensus 382 ~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~ 461 (764)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccceeEEeccccch
Q 004278 462 ANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMA 541 (764)
Q Consensus 462 ~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 541 (764)
+.+|.||+||++. ||.|||++|+|+|.+... .-.++||||||
T Consensus 379 -------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilSGTSMa 420 (501)
T KOG1153|consen 379 -------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILSGTSMA 420 (501)
T ss_pred -------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheeeccccc
Confidence 3689999999995 999999999999998743 66899999999
Q ss_pred hhhHHHHHHHHhhhCCC---------CCHHHHHHHHHhccc
Q 004278 542 CPHVSGAAALLKSAHPD---------WSPAAIRSAMMTTAS 573 (764)
Q Consensus 542 aP~VAGvaALl~~~~P~---------~sp~~ik~~L~~TA~ 573 (764)
+|||||++|.+++.+|. .||.++|..+..-..
T Consensus 421 sPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 421 SPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred CcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 99999999999999883 388888887776554
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=8.9e-43 Score=378.99 Aligned_cols=221 Identities=29% Similarity=0.366 Sum_probs=165.6
Q ss_pred CCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCC--CCHHHHHHHHHHHHhCCCcEEEeccC
Q 004278 216 RDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGVDVISISIG 293 (764)
Q Consensus 216 ~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (764)
.|+.+|||||||||||+..++. .+.||||+|+|+.+|+++...+ +...++++||++|++.|+||||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 4788999999999999854332 2579999999999999875423 23457999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHH-HhhcCCcEEEEecCCCCCCCCccc--c-CCCceEEecCCccCCccceEEEeCCCeEEEeE
Q 004278 294 GGDGISSPYYLDPIAIGSY-GAASRGVFVSSSAGNDGPNGMSVT--N-LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGV 369 (764)
Q Consensus 294 ~~~g~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~~~--~-~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~ 369 (764)
... ..+. ...+...+. .+.++||++|+||||+|+..+++. . ..+++|+|||........+.
T Consensus 254 ~~~--~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 254 EAT--HWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred cCC--CCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 873 1111 122333333 345799999999999998776653 2 46899999995321110000
Q ss_pred EeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcc
Q 004278 370 SLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGL 449 (764)
Q Consensus 370 ~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 449 (764)
| ..
T Consensus 319 ------------y----------------------------------------------------------~~------- 321 (412)
T cd04857 319 ------------Y----------------------------------------------------------SL------- 321 (412)
T ss_pred ------------c----------------------------------------------------------cc-------
Confidence 0 00
Q ss_pred cHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCcc
Q 004278 450 VGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRK 529 (764)
Q Consensus 450 ~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 529 (764)
..+..+.++.||||||+. ++.+||||+|||..|.+.-....
T Consensus 322 --------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~~----------- 362 (412)
T cd04857 322 --------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWTL----------- 362 (412)
T ss_pred --------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCCC-----------
Confidence 001124679999999995 49999999999999987522211
Q ss_pred ceeEEeccccchhhhHHHHHHHHhh----hCCCCCHHHHHHHHHhccccc
Q 004278 530 TEFNILSGTSMACPHVSGAAALLKS----AHPDWSPAAIRSAMMTTASIV 575 (764)
Q Consensus 530 ~~y~~~sGTSmAaP~VAGvaALl~~----~~P~~sp~~ik~~L~~TA~~~ 575 (764)
..|..++|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 ~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 1689999999999999999999975 578999999999999999863
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=6.7e-43 Score=369.93 Aligned_cols=264 Identities=29% Similarity=0.319 Sum_probs=201.1
Q ss_pred CCccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCC
Q 004278 124 GLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIG 203 (764)
Q Consensus 124 ~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~ 203 (764)
.+|..+.+|+||+|+|||||||++||+|.+.... ..+ ..+...+......
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~------------~~~~~~~~~~~~~----- 50 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGY------------DPAVNGYNFVPNV----- 50 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCc------------ccccCCccccccc-----
Confidence 3799999999999999999999999999865110 000 0000011000000
Q ss_pred CCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhC
Q 004278 204 GGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND 283 (764)
Q Consensus 204 ~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~ 283 (764)
........|..+|||||||||+|+..+....-|.+ .+.|+||+|+|+.+|++.....+...+++++|++|++.
T Consensus 51 -----~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~ 123 (273)
T cd07485 51 -----GDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADN 123 (273)
T ss_pred -----CCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHc
Confidence 00113345778999999999999865433222222 23579999999999999876347788899999999999
Q ss_pred CCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcC-------CcEEEEecCCCCCCCCccccCCCceEEecCCccCCccce
Q 004278 284 GVDVISISIGGGDGISSPYYLDPIAIGSYGAASR-------GVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPA 356 (764)
Q Consensus 284 gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~ 356 (764)
|++|||||||.. ....+...+..++..+.++ |+++|+||||++......+...|++|+||+.+.
T Consensus 124 g~~Vin~S~g~~---~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 124 GAVILQNSWGGT---GGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred CCcEEEecCCCC---CccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999999987 3333456677777788887 999999999999887777888899999998421
Q ss_pred EEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceE
Q 004278 357 EVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVG 436 (764)
Q Consensus 357 ~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 436 (764)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCC-cEEeccc
Q 004278 437 MILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGV-NILAAWT 515 (764)
Q Consensus 437 ~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~-~I~sa~~ 515 (764)
.+.++.||++|+. +||+|||. .|+++++
T Consensus 195 -------------------------------------------~~~~~~~S~~g~~--------~~i~apG~~~i~~~~~ 223 (273)
T cd07485 195 -------------------------------------------NDNKASFSNYGRW--------VDIAAPGVGTILSTVP 223 (273)
T ss_pred -------------------------------------------CCCcCccccCCCc--------eEEEeCCCCccccccc
Confidence 1256789999987 49999999 8988876
Q ss_pred CCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCC-CCHHHHHHHHHhc
Q 004278 516 EAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD-WSPAAIRSAMMTT 571 (764)
Q Consensus 516 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~-~sp~~ik~~L~~T 571 (764)
.... .....|..++|||||||+|||++|||+|++|+ |+|+|||++|++|
T Consensus 224 ~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 224 KLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 5411 11227899999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-42 Score=363.97 Aligned_cols=258 Identities=34% Similarity=0.467 Sum_probs=203.3
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccc
Q 004278 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (764)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (764)
|+||+|+|||+||+++||+|.+.... .+.+... ...
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~-----------------~~~ 36 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNT-----------------VNG 36 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------ccccccc-----------------ccC
Confidence 89999999999999999999764211 0000000 011
Q ss_pred cCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhC----CCcE
Q 004278 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND----GVDV 287 (764)
Q Consensus 212 ~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~----gvdV 287 (764)
.....|..+|||||||+|+|+..+. .+.+.|+||+|+|+.+|+++.......+++++||+++++. +++|
T Consensus 37 ~~~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 37 RTTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceE
Confidence 2345677899999999999986542 1225899999999999999887336778999999999998 9999
Q ss_pred EEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC--ccccCCCceEEecCCccCCccceEEEeCCCeE
Q 004278 288 ISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM--SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRR 365 (764)
Q Consensus 288 In~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~ 365 (764)
||||||... ......+.+..++.++.++|++||+||||++.... ..+...+++|+|||...+..
T Consensus 110 in~S~g~~~--~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 110 VNLSLGAPP--DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred EEeccCCCC--CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 999999883 22445678888899999999999999999998775 55677899999999533211
Q ss_pred EEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 366 LSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 366 ~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCC
Q 004278 446 GEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDS 525 (764)
Q Consensus 446 ~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 525 (764)
....++.||++||+.. +++||||+|||.+|+++.+.... ..
T Consensus 176 ---------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~~----~~ 216 (264)
T cd07487 176 ---------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGGN----PG 216 (264)
T ss_pred ---------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEeccccccc----cC
Confidence 0014688999999954 89999999999999998654311 01
Q ss_pred CCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 526 DLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 526 ~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
......|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 217 ~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 217 AGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred CCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 112237899999999999999999999999999999999999999985
No 19
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.4e-41 Score=357.43 Aligned_cols=241 Identities=34% Similarity=0.442 Sum_probs=200.6
Q ss_pred CCCccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCC
Q 004278 123 QGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPI 202 (764)
Q Consensus 123 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 202 (764)
..+|..+ +|+||+|+|||+||+++||+|.+. ++...+++..
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~------------ 59 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVD------------ 59 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccC------------
Confidence 4688888 999999999999999999998422 2222222221
Q ss_pred CCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHh
Q 004278 203 GGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN 282 (764)
Q Consensus 203 ~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~ 282 (764)
....+.|..+|||||||||++...+... +.|+||+|+|+.+|+++....+...+++++|+++++
T Consensus 60 --------~~~~~~d~~~HGT~vagii~~~~~~~~~--------~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~ 123 (260)
T cd07484 60 --------NDSDAMDDNGHGTHVAGIIAAATNNGTG--------VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAAD 123 (260)
T ss_pred --------CCCCCCCCCCcHHHHHHHHhCccCCCCc--------eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHH
Confidence 1123567889999999999987544322 479999999999999987634778899999999999
Q ss_pred CCCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCccccCCCceEEecCCccCCccceEEEeCC
Q 004278 283 DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGD 362 (764)
Q Consensus 283 ~gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~~~~ 362 (764)
.|++|||||||.. . ....+..++..+.++|++||+||||+|.....+++..|++|+||+.+.
T Consensus 124 ~~~~iin~S~g~~---~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------ 185 (260)
T cd07484 124 KGAKVINLSLGGG---L---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------ 185 (260)
T ss_pred CCCeEEEecCCCC---C---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC------------
Confidence 9999999999987 2 345677777888999999999999999988888999999999998421
Q ss_pred CeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEecc
Q 004278 363 GRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANG 442 (764)
Q Consensus 363 g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 442 (764)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCC
Q 004278 443 ISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTG 522 (764)
Q Consensus 443 ~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 522 (764)
.+..+.||++|+. +|++|||.+|+++.+..
T Consensus 186 -------------------------------------~~~~~~~s~~g~~--------~~~~apG~~i~~~~~~~----- 215 (260)
T cd07484 186 -------------------------------------DDKRASFSNYGKW--------VDVSAPGGGILSTTPDG----- 215 (260)
T ss_pred -------------------------------------CCCcCCcCCCCCC--------ceEEeCCCCcEeecCCC-----
Confidence 1246789999986 49999999999987664
Q ss_pred CCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccccc
Q 004278 523 LDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIV 575 (764)
Q Consensus 523 ~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~ 575 (764)
.|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 216 --------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 --------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred --------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 799999999999999999999999999 99999999999999875
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.4e-41 Score=356.44 Aligned_cols=233 Identities=39% Similarity=0.507 Sum_probs=193.3
Q ss_pred CccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCC
Q 004278 125 LWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGG 204 (764)
Q Consensus 125 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 204 (764)
+|..+++|+||+|+|||+||+++||+|.++ +...+.|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 667789999999999999999999999743 1111222210
Q ss_pred CCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhC-
Q 004278 205 GINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND- 283 (764)
Q Consensus 205 ~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~- 283 (764)
....|..+|||||||||+|+. .||||+|+|+.+|+++.......++++++++++++.
T Consensus 57 --------~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~ 114 (255)
T cd04077 57 --------DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDA 114 (255)
T ss_pred --------CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcc
Confidence 115678899999999999863 599999999999999877336778899999999987
Q ss_pred ----CCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC-CccccCCCceEEecCCccCCccceEE
Q 004278 284 ----GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEV 358 (764)
Q Consensus 284 ----gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAst~d~~~~~~~ 358 (764)
+++|||||||.. . ...+..++.++.++|+++|+||||+|... ...+...|++|+|||.+.+
T Consensus 115 ~~~~~~~iin~S~g~~---~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------- 180 (255)
T cd04077 115 TKRGKPAVANMSLGGG---A----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------- 180 (255)
T ss_pred cccCCCeEEEeCCCCC---C----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------
Confidence 489999999987 2 45677778889999999999999999765 4567788999999984221
Q ss_pred EeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEE
Q 004278 359 RLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMI 438 (764)
Q Consensus 359 ~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i 438 (764)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCC
Q 004278 439 LANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAV 518 (764)
Q Consensus 439 ~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 518 (764)
+.++.||++||. +||+|||.+|+++.....
T Consensus 181 ------------------------------------------~~~~~~S~~g~~--------~~i~apG~~i~~~~~~~~ 210 (255)
T cd04077 181 ------------------------------------------DARASFSNYGSC--------VDIFAPGVDILSAWIGSD 210 (255)
T ss_pred ------------------------------------------CCccCcccCCCC--------CcEEeCCCCeEecccCCC
Confidence 246889999997 399999999999877432
Q ss_pred CCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhcccc
Q 004278 519 GPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASI 574 (764)
Q Consensus 519 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~ 574 (764)
. .|..++|||||||+|||++|||+|++|+++++|||++|++||++
T Consensus 211 ~-----------~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 211 T-----------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred C-----------cEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2 78999999999999999999999999999999999999999974
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-41 Score=353.48 Aligned_cols=253 Identities=35% Similarity=0.423 Sum_probs=187.4
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccC
Q 004278 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (764)
Q Consensus 134 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 213 (764)
||+|||||||||++||+|.+. +...+.|... . .....
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~-----~-----------~~~~~ 37 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDEN-----R-----------RISAT 37 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCC-----C-----------CCCCC
Confidence 799999999999999999753 1111112110 0 01123
Q ss_pred CCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEeccC
Q 004278 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (764)
Q Consensus 214 ~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (764)
...|..+|||||||||+|+..+ +...||||+|+|+.+|++... ++..++++++|+++++.+++|||||||
T Consensus 38 ~~~d~~~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 38 EVFDAGGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCC-CCcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4557789999999999998652 124699999999999999887 588899999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhc-CCcEEEEecCCCCCCCCccccCCCceEEecCCccCCccceEEEeCCCeEEEeEEee
Q 004278 294 GGDGISSPYYLDPIAIGSYGAAS-RGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLY 372 (764)
Q Consensus 294 ~~~g~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~ 372 (764)
... .. .+.+..++....+ +|++||+||||+|......+...|++|+|||.+.+........
T Consensus 108 ~~~---~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------- 169 (254)
T cd07490 108 GTY---YS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------- 169 (254)
T ss_pred cCC---CC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-------------
Confidence 872 22 4556555554443 6999999999999887788888999999999643321000000
Q ss_pred cCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccHH
Q 004278 373 AGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD 452 (764)
Q Consensus 373 ~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 452 (764)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCcccee
Q 004278 453 AVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEF 532 (764)
Q Consensus 453 ~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 532 (764)
.........+.+|.. .....|||+.|||.+|+++..... ....|
T Consensus 170 --------------------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~~---------~~~~~ 213 (254)
T cd07490 170 --------------------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGAN---------GDGQY 213 (254)
T ss_pred --------------------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccccCCC---------CCCCe
Confidence 000112223334432 235689999999999999652211 12279
Q ss_pred EEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 533 NILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 533 ~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 214 ~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 214 TRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred eecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.4e-42 Score=364.52 Aligned_cols=233 Identities=26% Similarity=0.231 Sum_probs=166.7
Q ss_pred CCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCC----CCCHHHHHHHHHHHHhCC---CcE
Q 004278 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA----GCFDSDILAAFDAAVNDG---VDV 287 (764)
Q Consensus 215 ~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~----g~~~s~i~~ai~~A~~~g---vdV 287 (764)
+.|..||||||||||++...... ...|+||+++|+.+|++...+ ..+..++++||+||++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~~~--------~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLTLP--------GNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCcccCC--------CCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 56889999999999997654311 236999999999999999862 245678899999999853 499
Q ss_pred EEeccCCCCCCCCCCCCCHHHHHHH-HhhcCCcEEEEecCCCCCCCCc------------cccCCCceEEecCCccCCcc
Q 004278 288 ISISIGGGDGISSPYYLDPIAIGSY-GAASRGVFVSSSAGNDGPNGMS------------VTNLAPWIVTVGAGTIDRNF 354 (764)
Q Consensus 288 In~SlG~~~g~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgAst~d~~~ 354 (764)
||||||........ ....+..++. .+.++|++||+||||+|..... .+..++++|+|||.+.+...
T Consensus 106 iN~SlG~~~~~~~~-~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~ 184 (291)
T cd04847 106 FNLSLGSPLPIDDG-RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDI 184 (291)
T ss_pred EEEecCCCCCccCC-CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccC
Confidence 99999997311111 1123444443 3568999999999999987643 24567899999996543321
Q ss_pred ceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCc
Q 004278 355 PAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGG 434 (764)
Q Consensus 355 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 434 (764)
... ...
T Consensus 185 ~~~----------------------------------------s~~---------------------------------- 190 (291)
T cd04847 185 TDR----------------------------------------ARY---------------------------------- 190 (291)
T ss_pred CCc----------------------------------------ccc----------------------------------
Confidence 000 000
Q ss_pred eEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecc
Q 004278 435 VGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAW 514 (764)
Q Consensus 435 ~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~ 514 (764)
+.......+.||+|||.. .+.+||||+|||++|.+..
T Consensus 191 -----------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~ 227 (291)
T cd04847 191 -----------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDP 227 (291)
T ss_pred -----------------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecC
Confidence 000001233499999995 4999999999999998865
Q ss_pred cCCCCC-----CCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 515 TEAVGP-----TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 515 ~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
...... ...........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 228 SGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 422100 00001112337999999999999999999999999999999999999999984
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-41 Score=361.07 Aligned_cols=254 Identities=26% Similarity=0.341 Sum_probs=181.8
Q ss_pred cCCCccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCC
Q 004278 122 QQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGP 201 (764)
Q Consensus 122 ~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~ 201 (764)
...+|+.+.+|+||+|+||||||+..|| |...++. + ++ .+..
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~----------- 51 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAP----------- 51 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCC-----------
Confidence 3468999999999999999999999998 7543110 0 00 0000
Q ss_pred CCCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHH
Q 004278 202 IGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV 281 (764)
Q Consensus 202 ~~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~ 281 (764)
.......|..|||||||+++ .||||+|+|+.+|+++. ..+++++||+||+
T Consensus 52 --------~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~ 101 (298)
T cd07494 52 --------GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAI 101 (298)
T ss_pred --------CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHH
Confidence 01123567889999998864 49999999999999854 4567899999999
Q ss_pred hCCCcEEEeccCCCCCCCC-------CCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCccccCCCceEEecCCccCCcc
Q 004278 282 NDGVDVISISIGGGDGISS-------PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNF 354 (764)
Q Consensus 282 ~~gvdVIn~SlG~~~g~~~-------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~ 354 (764)
++++||||||||....... +.....+..++.+|.++|++||+||||++. .+++..|++|+|||++.+..-
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g 178 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG 178 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC
Confidence 9999999999998631010 011335777888899999999999999874 568899999999996443210
Q ss_pred ceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCc
Q 004278 355 PAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGG 434 (764)
Q Consensus 355 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 434 (764)
..
T Consensus 179 ---------~~--------------------------------------------------------------------- 180 (298)
T cd07494 179 ---------AR--------------------------------------------------------------------- 180 (298)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred eEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcE-----------
Q 004278 435 VGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDL----------- 503 (764)
Q Consensus 435 ~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI----------- 503 (764)
......+.|++. ..+++.|||+
T Consensus 181 -------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~~g~~~~~~ 213 (298)
T cd07494 181 -------------------------------------------RASSYASGFRSK----IYPGRQVPDVCGLVGMLPHAA 213 (298)
T ss_pred -------------------------------------------cccccccCcccc----cCCCCccCccccccCcCCccc
Confidence 000000111111 1235567776
Q ss_pred -----EcCCCcEEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhcccccc
Q 004278 504 -----IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVD 576 (764)
Q Consensus 504 -----~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~~ 576 (764)
+|||..|.++..... . .......|..++|||||||||||++|||+|+||.|+++|||.+|++||+++.
T Consensus 214 ~~~~~~APG~~i~~~~~~~~--~---~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 214 YLMLPVPPGSQLDRSCAAFP--D---GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred ccccccCCCcceeccccCCC--C---CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 479999876543210 0 0011237999999999999999999999999999999999999999999774
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-41 Score=357.96 Aligned_cols=208 Identities=32% Similarity=0.403 Sum_probs=168.2
Q ss_pred CCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHH----------h
Q 004278 213 MSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV----------N 282 (764)
Q Consensus 213 ~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~----------~ 282 (764)
....+..+|||||||||+|...++.. +.||||+|+|+.+|+++.. +.+.+++++|++||+ .
T Consensus 65 ~~~~~~~~HGT~vAgiiaa~~~~~~~--------~~GvAp~a~i~~~~v~~~~-~~~~~~i~~a~~~a~~~~~~~~~~~~ 135 (285)
T cd07496 65 SGVSPSSWHGTHVAGTIAAVTNNGVG--------VAGVAWGARILPVRVLGKC-GGTLSDIVDGMRWAAGLPVPGVPVNP 135 (285)
T ss_pred CCCCCCCCCHHHHHHHHhCcCCCCCC--------ceeecCCCeEEEEEEecCC-CCcHHHHHHHHHHHhccCcCCCcccC
Confidence 34567889999999999998753322 4799999999999999887 668899999999998 4
Q ss_pred CCCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC-CccccCCCceEEecCCccCCccceEEEeC
Q 004278 283 DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEVRLG 361 (764)
Q Consensus 283 ~gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAst~d~~~~~~~~~~ 361 (764)
++++|||||||... .. ...+..++..+.++|++||+||||++... ..++...|++|+|||.+.
T Consensus 136 ~~~~Iin~S~G~~~---~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------- 199 (285)
T cd07496 136 NPAKVINLSLGGDG---AC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL----------- 199 (285)
T ss_pred CCCeEEEeCCCCCC---CC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-----------
Confidence 57899999999872 21 45677788889999999999999999876 567788899999998421
Q ss_pred CCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEec
Q 004278 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (764)
Q Consensus 362 ~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 441 (764)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCC
Q 004278 442 GISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPT 521 (764)
Q Consensus 442 ~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 521 (764)
.+.++.||++|+. +||.|||.+|.++........
T Consensus 200 --------------------------------------~~~~~~~S~~g~~--------vdi~apG~~i~~~~~~~~~~~ 233 (285)
T cd07496 200 --------------------------------------RGQRASYSNYGPA--------VDVSAPGGDCASDVNGDGYPD 233 (285)
T ss_pred --------------------------------------CCCcccccCCCCC--------CCEEeCCCCccccCCCCcccc
Confidence 1256889999997 399999999998876532110
Q ss_pred --CCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004278 522 --GLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 571 (764)
Q Consensus 522 --~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~T 571 (764)
..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 234 ~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 234 SNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 00111123378999999999999999999999999999999999999976
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.3e-40 Score=356.38 Aligned_cols=278 Identities=32% Similarity=0.385 Sum_probs=199.4
Q ss_pred CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCC
Q 004278 128 ESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGIN 207 (764)
Q Consensus 128 ~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~ 207 (764)
++++|+||+|||||||||++||+|.+.... +.. ..++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~----~~~~~~~~~~~~~~----------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTN----LFHRKIVRYDSLSD----------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCc----cCcccEEEeeccCC-----------------
Confidence 578999999999999999999999764210 001 12334433222211
Q ss_pred CccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCC-CCHHHHHHHHHHHHhCCCc
Q 004278 208 ETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG-CFDSDILAAFDAAVNDGVD 286 (764)
Q Consensus 208 ~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~s~i~~ai~~A~~~gvd 286 (764)
...|..+|||||||||+|+..+... ...+.|+||+|+|+.+|+++.... ....++..+++++.+.+++
T Consensus 49 ------~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (293)
T cd04842 49 ------TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGAR 117 (293)
T ss_pred ------CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCE
Confidence 1227899999999999998765431 112479999999999999987621 4566788999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCHHHHHHHHh-hc-CCcEEEEecCCCCCCCC---ccccCCCceEEecCCccCCccceEEEeC
Q 004278 287 VISISIGGGDGISSPYYLDPIAIGSYGA-AS-RGVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVRLG 361 (764)
Q Consensus 287 VIn~SlG~~~g~~~~~~~~~~~~a~~~a-~~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAst~d~~~~~~~~~~ 361 (764)
|||||||... ... ......++.++ .+ +|+++|+||||+|.... ..+...+++|+|||.+.+.....
T Consensus 118 Vin~S~G~~~---~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~----- 188 (293)
T cd04842 118 ISSNSWGSPV---NNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG----- 188 (293)
T ss_pred EEeccCCCCC---ccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-----
Confidence 9999999983 211 12333333333 23 89999999999997765 66788899999999654432100
Q ss_pred CCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEec
Q 004278 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (764)
Q Consensus 362 ~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 441 (764)
..|..
T Consensus 189 ----------------------------------~~~~~----------------------------------------- 193 (293)
T cd04842 189 ----------------------------------EGGLG----------------------------------------- 193 (293)
T ss_pred ----------------------------------ccccc-----------------------------------------
Confidence 00000
Q ss_pred cCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCC
Q 004278 442 GISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPT 521 (764)
Q Consensus 442 ~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 521 (764)
.......++.||++||+.. +++||||+|||++|+++......
T Consensus 194 ----------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~~~~~-- 235 (293)
T cd04842 194 ----------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARSGGGG-- 235 (293)
T ss_pred ----------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccCCCCC--
Confidence 0012236899999999854 89999999999999999755300
Q ss_pred CCCCCCccceeEEeccccchhhhHHHHHHHHhhhC-----C---CCCHHHHHHHHHhccc
Q 004278 522 GLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH-----P---DWSPAAIRSAMMTTAS 573 (764)
Q Consensus 522 ~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~-----P---~~sp~~ik~~L~~TA~ 573 (764)
........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 236 --~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 236 --IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred --CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 011122378999999999999999999999985 4 6677899999999985
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-40 Score=357.09 Aligned_cols=268 Identities=29% Similarity=0.343 Sum_probs=185.1
Q ss_pred CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCC
Q 004278 128 ESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGIN 207 (764)
Q Consensus 128 ~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~ 207 (764)
.+++|+||+||||||||+.+||+|.+... ...+|.+
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~----------------- 38 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVG----------------- 38 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCC-----------------
Confidence 57899999999999999999999975311 1111211
Q ss_pred CccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcE
Q 004278 208 ETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDV 287 (764)
Q Consensus 208 ~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdV 287 (764)
...+.|..||||||||||+|+..++ ...||||+|+|+.+|++.....+..+++++||+||++.|++|
T Consensus 39 ----~~~~~d~~gHGT~VAgiiag~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~V 105 (297)
T cd07480 39 ----GEDVQDGHGHGTHCAGTIFGRDVPG---------PRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADV 105 (297)
T ss_pred ----CCCCCCCCCcHHHHHHHHhcccCCC---------cccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 0124678899999999999986542 236999999999999998764577788999999999999999
Q ss_pred EEeccCCCC-C-----C-CCCCCCCHHHHHHHHh---------------hcCCcEEEEecCCCCCCCCccc-----cCCC
Q 004278 288 ISISIGGGD-G-----I-SSPYYLDPIAIGSYGA---------------ASRGVFVSSSAGNDGPNGMSVT-----NLAP 340 (764)
Q Consensus 288 In~SlG~~~-g-----~-~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~~p 340 (764)
||||||... + + ........+......+ .++|++||+||||+|....... ...+
T Consensus 106 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~ 185 (297)
T cd07480 106 ISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACP 185 (297)
T ss_pred EEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccc
Confidence 999999862 0 0 0000111222222223 6899999999999986543211 1112
Q ss_pred ceEEecCCccCCccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCC
Q 004278 341 WIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS 420 (764)
Q Consensus 341 ~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~ 420 (764)
++++|++..
T Consensus 186 ~~~~V~~V~----------------------------------------------------------------------- 194 (297)
T cd07480 186 SAMGVAAVG----------------------------------------------------------------------- 194 (297)
T ss_pred cccEEEEEC-----------------------------------------------------------------------
Confidence 233332210
Q ss_pred chhhHHHHHHHcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCC
Q 004278 421 PRVAKGLVVKKAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILK 500 (764)
Q Consensus 421 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lK 500 (764)
..+....|+++.+. ...|
T Consensus 195 ----------------------------------------------------------~~~~~~~~~~~~~~----~~~~ 212 (297)
T cd07480 195 ----------------------------------------------------------ALGRTGNFSAVANF----SNGE 212 (297)
T ss_pred ----------------------------------------------------------CCCCCCCccccCCC----CCCc
Confidence 00112223333332 2347
Q ss_pred CcEEcCCCcEEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccccccCCCC
Q 004278 501 PDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQ 580 (764)
Q Consensus 501 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~ 580 (764)
|||+|||.+|+++++.+ .|..++|||||||+|||++|||+|++|++++.+++.+|+.........
T Consensus 213 ~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~-- 277 (297)
T cd07480 213 VDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT-- 277 (297)
T ss_pred eEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC--
Confidence 89999999999988765 899999999999999999999999999999999888888543321100
Q ss_pred CCCccCCCCCCCCCCCCCCcccccc
Q 004278 581 PMTDEATGNASTPYDFGAGHVNLDR 605 (764)
Q Consensus 581 ~~~~~~~~~~~~~~~~G~G~vn~~~ 605 (764)
.......+.++|+|++++.+
T Consensus 278 -----~~~~~~~~~~~g~G~~~~~~ 297 (297)
T cd07480 278 -----QFAPGLDLPDRGVGLGLAPA 297 (297)
T ss_pred -----CCCCCCChhhcCCceeecCC
Confidence 01223556689999998753
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-40 Score=348.40 Aligned_cols=247 Identities=32% Similarity=0.438 Sum_probs=191.9
Q ss_pred CCcEEEEEecCCCCCCCCccCCCCCCCCCccee---eeecccccCcccCCceeeeeeeccc---cccccCCCCCCCCCCC
Q 004278 133 SDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKG---VCQVGVKFTAKNCNKKIIGARFFSK---GHEAAGGSAGPIGGGI 206 (764)
Q Consensus 133 ~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g---~~~~g~~f~~~~~n~kiig~~~~~~---g~~~~~~~~~~~~~~~ 206 (764)
+||+|||||||||++||+|.+.. |.. .|..+.+... ..|.+ +|+.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~------------ 52 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDG----------NGYVDDIYGWNF------------ 52 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCC----------CCcccCCCcccc------------
Confidence 68999999999999999998642 221 1111111100 00111 1111
Q ss_pred CCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCc
Q 004278 207 NETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVD 286 (764)
Q Consensus 207 ~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvd 286 (764)
......+.|..+|||||||||+|+..+... +.|+||+|+|+.+|++.....++..+++++|++|++.+++
T Consensus 53 --~~~~~~~~d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~ 122 (259)
T cd07473 53 --VNNDNDPMDDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAK 122 (259)
T ss_pred --cCCCCCCCCCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCe
Confidence 112345678899999999999998654432 4799999999999999887337888999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC---Ccccc--CCCceEEecCCccCCccceEEEeC
Q 004278 287 VISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG---MSVTN--LAPWIVTVGAGTIDRNFPAEVRLG 361 (764)
Q Consensus 287 VIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgAst~d~~~~~~~~~~ 361 (764)
|||+|||... ....+..++.++.++|+++|+||||+|... ..++. ..|++|+||+.+.
T Consensus 123 vin~S~G~~~------~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~----------- 185 (259)
T cd07473 123 IINNSWGGGG------PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS----------- 185 (259)
T ss_pred EEEeCCCCCC------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC-----------
Confidence 9999999882 256777888889999999999999998762 23343 3578999988421
Q ss_pred CCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEec
Q 004278 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (764)
Q Consensus 362 ~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 441 (764)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCC
Q 004278 442 GISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPT 521 (764)
Q Consensus 442 ~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 521 (764)
.+.++.||++||. +||+.|||.++++.....
T Consensus 186 --------------------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~~---- 216 (259)
T cd07473 186 --------------------------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPGG---- 216 (259)
T ss_pred --------------------------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCCC----
Confidence 1245679999987 479999999999976554
Q ss_pred CCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 522 GLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 522 ~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 217 ---------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 ---------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ---------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999985
No 28
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-40 Score=346.56 Aligned_cols=207 Identities=34% Similarity=0.401 Sum_probs=168.8
Q ss_pred CCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEeccC
Q 004278 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (764)
Q Consensus 214 ~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (764)
.+.|..+|||||||||+|+..+.. .+.|+||+|+|+.+|+++....+..+++.++++++++.+++|||||||
T Consensus 35 ~~~~~~~HGT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g 106 (242)
T cd07498 35 PTSDIDGHGTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWG 106 (242)
T ss_pred CCCCCCCCHHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccC
Confidence 346788999999999999864332 257999999999999998763467888999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhc-CCcEEEEecCCCCCCCCccccCCCceEEecCCccCCccceEEEeCCCeEEEeEEee
Q 004278 294 GGDGISSPYYLDPIAIGSYGAAS-RGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLY 372 (764)
Q Consensus 294 ~~~g~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~ 372 (764)
... ........+..++..+.+ +|+++|+||||+|......++..|++|+|||.+.
T Consensus 107 ~~~--~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~---------------------- 162 (242)
T cd07498 107 GSD--STESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS---------------------- 162 (242)
T ss_pred CCC--CCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC----------------------
Confidence 873 222334567777777888 9999999999999887777888999999998431
Q ss_pred cCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccHH
Q 004278 373 AGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD 452 (764)
Q Consensus 373 ~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 452 (764)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCcccee
Q 004278 453 AVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEF 532 (764)
Q Consensus 453 ~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 532 (764)
.+.++.||++||. +|++|||.+++........ ........|
T Consensus 163 ---------------------------~~~~~~~s~~g~~--------~~~~apG~~~~~~~~~~~~----~~~~~~~~~ 203 (242)
T cd07498 163 ---------------------------NDARASYSNYGNY--------VDLVAPGVGIWTTGTGRGS----AGDYPGGGY 203 (242)
T ss_pred ---------------------------CCCccCcCCCCCC--------eEEEeCcCCcccCCccccc----cccCCCCce
Confidence 1246889999997 4999999999887544211 111122378
Q ss_pred EEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004278 533 NILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 571 (764)
Q Consensus 533 ~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~T 571 (764)
..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 204 ~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 204 GSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999976
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-40 Score=349.32 Aligned_cols=247 Identities=21% Similarity=0.248 Sum_probs=175.4
Q ss_pred CCCccCCC-CCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCC
Q 004278 123 QGLWSESD-YGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGP 201 (764)
Q Consensus 123 ~~~~~~~~-~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~ 201 (764)
..+|+... .|+||+|+|||+|||.+||+|.++... +..
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~----------- 43 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LIS----------- 43 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccC-----------
Confidence 35787744 489999999999999999999754110 000
Q ss_pred CCCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHH
Q 004278 202 IGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV 281 (764)
Q Consensus 202 ~~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~ 281 (764)
...+.|+.+|||||||||||..+ + .| +.||||+|+|+.+|++. .++++++|++|+
T Consensus 44 ----------~~~~~d~~gHGT~VAGiIaa~~n-~-------~G-~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~ 98 (277)
T cd04843 44 ----------GLTDQADSDHGTAVLGIIVAKDN-G-------IG-VTGIAHGAQAAVVSSTR------VSNTADAILDAA 98 (277)
T ss_pred ----------CCCCCCCCCCcchhheeeeeecC-C-------Cc-eeeeccCCEEEEEEecC------CCCHHHHHHHHH
Confidence 01145778999999999999632 1 12 47999999999999975 234666666666
Q ss_pred h----CCCcEEEeccCCCCCCCCC---CCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCcc------------c-cCCCc
Q 004278 282 N----DGVDVISISIGGGDGISSP---YYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV------------T-NLAPW 341 (764)
Q Consensus 282 ~----~gvdVIn~SlG~~~g~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~------------~-~~~p~ 341 (764)
+ .++.+||||||........ .....+..++.+|.++|+++|+||||++...... + ...|+
T Consensus 99 ~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (277)
T cd04843 99 DYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSG 178 (277)
T ss_pred hccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCC
Confidence 6 4567899999986310110 1223455677788899999999999998653211 1 12356
Q ss_pred eEEecCCccCCccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCc
Q 004278 342 IVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSP 421 (764)
Q Consensus 342 vitVgAst~d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~ 421 (764)
+|+|||+..+.
T Consensus 179 vI~VgA~~~~~--------------------------------------------------------------------- 189 (277)
T cd04843 179 AIMVGAGSSTT--------------------------------------------------------------------- 189 (277)
T ss_pred eEEEEeccCCC---------------------------------------------------------------------
Confidence 77777732110
Q ss_pred hhhHHHHHHHcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCC
Q 004278 422 RVAKGLVVKKAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKP 501 (764)
Q Consensus 422 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKP 501 (764)
...++.||++|+. +
T Consensus 190 ----------------------------------------------------------~~~~~~fSn~G~~--------v 203 (277)
T cd04843 190 ----------------------------------------------------------GHTRLAFSNYGSR--------V 203 (277)
T ss_pred ----------------------------------------------------------CCccccccCCCCc--------c
Confidence 0137899999996 4
Q ss_pred cEEcCCCcEEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhh----h-CCCCCHHHHHHHHHhccc
Q 004278 502 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS----A-HPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 502 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~----~-~P~~sp~~ik~~L~~TA~ 573 (764)
||.|||++|+++....... ........|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 204 di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 204 DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 9999999999998764311 0011112457899999999999999999975 3 499999999999999974
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.1e-39 Score=336.59 Aligned_cols=227 Identities=36% Similarity=0.506 Sum_probs=186.6
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccC
Q 004278 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (764)
Q Consensus 134 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 213 (764)
||+|||||+||+++||+|.+. ++..++|... ...
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~-------------------~~~ 34 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD-------------------DNN 34 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC-------------------CCC
Confidence 799999999999999999753 1111222210 002
Q ss_pred CCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEeccC
Q 004278 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (764)
Q Consensus 214 ~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (764)
...|..+|||||||+|+|..... .+.|+||+|+|+.+|+++....+...++++++++|++.|++|||||||
T Consensus 35 ~~~~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g 105 (229)
T cd07477 35 DYQDGNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLG 105 (229)
T ss_pred CCCCCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence 44677899999999999976432 247999999999999998773367789999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCcc--ccCCCceEEecCCccCCccceEEEeCCCeEEEeEEe
Q 004278 294 GGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV--TNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSL 371 (764)
Q Consensus 294 ~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~~ 371 (764)
... ....+..++..+.++|+++|+||||++...... ++..|++|+||+.+.+
T Consensus 106 ~~~------~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------- 159 (229)
T cd07477 106 GPS------DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------- 159 (229)
T ss_pred cCC------CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------
Confidence 872 234566677788999999999999999876664 7888999999984321
Q ss_pred ecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccH
Q 004278 372 YAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVG 451 (764)
Q Consensus 372 ~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 451 (764)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccce
Q 004278 452 DAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTE 531 (764)
Q Consensus 452 ~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 531 (764)
+.+..||++|+. +|+.|||.+|+++++.+ .
T Consensus 160 -----------------------------~~~~~~s~~g~~--------~~~~apg~~i~~~~~~~-------------~ 189 (229)
T cd07477 160 -----------------------------NNRASFSSTGPE--------VELAAPGVDILSTYPNN-------------D 189 (229)
T ss_pred -----------------------------CCcCCccCCCCC--------ceEEeCCCCeEEecCCC-------------C
Confidence 245789999986 59999999999998765 7
Q ss_pred eEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004278 532 FNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 571 (764)
Q Consensus 532 y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~T 571 (764)
|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 190 ~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 190 YAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred EEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999986
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1e-40 Score=354.99 Aligned_cols=277 Identities=36% Similarity=0.528 Sum_probs=207.8
Q ss_pred EEEEEecCCCCCCCCcc-CCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCC
Q 004278 136 IIGVFDTGIWPERRSFS-DLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMS 214 (764)
Q Consensus 136 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 214 (764)
+|||||||||++||+|. .. + ...++.+.+.|.++. .....
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~-----------------~~~~~ 41 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN-----------------PNPSP 41 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB-----------------STTTS
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC-----------------CCcCc
Confidence 69999999999999997 22 0 011233344444321 11234
Q ss_pred CCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHH-hCCCcEEEeccC
Q 004278 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV-NDGVDVISISIG 293 (764)
Q Consensus 215 ~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~-~~gvdVIn~SlG 293 (764)
..|..+|||||||+|+|.. . .. .....|+||+|+|+.+|++... +....+++++|++++ +++++|||||||
T Consensus 42 ~~~~~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~-~~~~~~~~~ai~~~~~~~~~~Vin~S~G 113 (282)
T PF00082_consen 42 SDDDNGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNS-GGTSSDLIEAIEYAVKNDGVDVINLSFG 113 (282)
T ss_dssp SSTSSSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTT-SEEHHHHHHHHHHHHHHTTSSEEEECEE
T ss_pred cccCCCccchhhhhccccc-c-cc-----cccccccccccccccccccccc-ccccccccchhhhhhhccCCcccccccc
Confidence 5678899999999999986 2 11 1124799999999999998877 577888999999999 899999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC---ccccCCCceEEecCCccCCccceEEEeCCCeEEEeEE
Q 004278 294 GGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVS 370 (764)
Q Consensus 294 ~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~ 370 (764)
...+.......+.+..+...+.++|+++|+||||+|+... ..+...+++|+||+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~-------------------- 173 (282)
T PF00082_consen 114 SNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN-------------------- 173 (282)
T ss_dssp BEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET--------------------
T ss_pred ccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc--------------------
Confidence 8310012222334556666889999999999999987765 35566788899988321
Q ss_pred eecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCccc
Q 004278 371 LYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV 450 (764)
Q Consensus 371 ~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 450 (764)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccc
Q 004278 451 GDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKT 530 (764)
Q Consensus 451 ~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 530 (764)
.+.++.||++|+.. .++.+||||+|||.+|+++++.... .
T Consensus 174 -----------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~----------~ 213 (282)
T PF00082_consen 174 -----------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDR----------G 213 (282)
T ss_dssp -----------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTES----------E
T ss_pred -----------------------------cccccccccccccc-ccccccccccccccccccccccccc----------c
Confidence 12458899997653 2589999999999999988876521 2
Q ss_pred eeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCCCCCCcccccccCC
Q 004278 531 EFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMD 608 (764)
Q Consensus 531 ~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 608 (764)
.|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++.... .......||||+||+.+|++
T Consensus 214 ~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 214 SYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-HHHHHH
T ss_pred cccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhCHHHHhC
Confidence 5889999999999999999999999999999999999999999886211 22344588999999999874
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.5e-40 Score=339.60 Aligned_cols=219 Identities=24% Similarity=0.246 Sum_probs=166.5
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccc
Q 004278 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (764)
Q Consensus 132 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (764)
+++|+|||||||||++||+|.++ ++..+.|...... + ...
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~-----------~~~ 41 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G-----------NKV 41 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c-----------ccC
Confidence 78999999999999999999743 1222222221000 0 000
Q ss_pred cCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCC------CCCHHHHHHHHHHHHhCCC
Q 004278 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA------GCFDSDILAAFDAAVNDGV 285 (764)
Q Consensus 212 ~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~s~i~~ai~~A~~~gv 285 (764)
.....|..||||||||||+ |+||+|+|+.+|+++... .++..++++||+||+++|+
T Consensus 42 ~~~~~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~ga 103 (247)
T cd07491 42 SPYYVSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKV 103 (247)
T ss_pred CCCCCCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCC
Confidence 1223578899999999996 789999999999998752 2456789999999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC-c--cccCCCceEEecCCccCCccceEEEeCC
Q 004278 286 DVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM-S--VTNLAPWIVTVGAGTIDRNFPAEVRLGD 362 (764)
Q Consensus 286 dVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~--~~~~~p~vitVgAst~d~~~~~~~~~~~ 362 (764)
||||||||.............+..++.+|.++|++||+||||+|.... + .+...|++|+|||.+.+
T Consensus 104 dIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~----------- 172 (247)
T cd07491 104 DIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED----------- 172 (247)
T ss_pred cEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC-----------
Confidence 999999998731111112567888888999999999999999998764 3 34567899999994321
Q ss_pred CeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEecc
Q 004278 363 GRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANG 442 (764)
Q Consensus 363 g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 442 (764)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCC
Q 004278 443 ISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTG 522 (764)
Q Consensus 443 ~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 522 (764)
+.++.||++|+.. |++|||++|+++++...
T Consensus 173 --------------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~~---- 202 (247)
T cd07491 173 --------------------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPPL---- 202 (247)
T ss_pred --------------------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCCC----
Confidence 2457799999873 99999999999875210
Q ss_pred CCCCCccceeEEeccccchhhhHHHHHHHHhhh
Q 004278 523 LDSDLRKTEFNILSGTSMACPHVSGAAALLKSA 555 (764)
Q Consensus 523 ~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~ 555 (764)
...|..++|||||||||||++|||++.
T Consensus 203 ------~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 203 ------SNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred ------CCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 127999999999999999999999974
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.1e-39 Score=347.31 Aligned_cols=211 Identities=32% Similarity=0.362 Sum_probs=155.0
Q ss_pred CCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEecc
Q 004278 213 MSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISI 292 (764)
Q Consensus 213 ~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~Sl 292 (764)
....|..||||||||+|+|+.. ..||||+|+|+.+|+++........+++++|++|++++++||||||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~ 114 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSL 114 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 3456789999999999998642 2499999999999999887234788999999999999999999999
Q ss_pred CCCCCCCC-----CCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC----------------------ccccCCCceEEe
Q 004278 293 GGGDGISS-----PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM----------------------SVTNLAPWIVTV 345 (764)
Q Consensus 293 G~~~g~~~-----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----------------------~~~~~~p~vitV 345 (764)
|....... ....+.+..++..+.++|++||+||||+|.... ..+...+++|+|
T Consensus 115 G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~V 194 (294)
T cd07482 115 GGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITV 194 (294)
T ss_pred ccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEE
Confidence 98631011 111234566667788999999999999996541 122333455555
Q ss_pred cCCccCCccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhH
Q 004278 346 GAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAK 425 (764)
Q Consensus 346 gAst~d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~ 425 (764)
||++
T Consensus 195 ga~~---------------------------------------------------------------------------- 198 (294)
T cd07482 195 SATD---------------------------------------------------------------------------- 198 (294)
T ss_pred EeeC----------------------------------------------------------------------------
Confidence 4421
Q ss_pred HHHHHHcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEc
Q 004278 426 GLVVKKAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIA 505 (764)
Q Consensus 426 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~A 505 (764)
..+.++.||++|+.. +|++|
T Consensus 199 -----------------------------------------------------~~~~~~~~S~~g~~~-------~~~~a 218 (294)
T cd07482 199 -----------------------------------------------------NNGNLSSFSNYGNSR-------IDLAA 218 (294)
T ss_pred -----------------------------------------------------CCCCcCccccCCCCc-------ceEEC
Confidence 223567899999864 59999
Q ss_pred CCCcEEecccCCCC---CCC------CCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCH-HHHHHHHHhc
Q 004278 506 PGVNILAAWTEAVG---PTG------LDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP-AAIRSAMMTT 571 (764)
Q Consensus 506 PG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp-~~ik~~L~~T 571 (764)
||+++......... ... .........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 219 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 219 PGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred CCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 99998532221110 000 001123347899999999999999999999999999999 9999999986
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-38 Score=325.75 Aligned_cols=222 Identities=25% Similarity=0.317 Sum_probs=173.7
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccC
Q 004278 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (764)
Q Consensus 134 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 213 (764)
||+|||||||||++||+|.+.-.. .+.+..+ .. .....
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~-~~--------------~~~~~ 38 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL-EI--------------IVVSA 38 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc-cc--------------ccCCC
Confidence 799999999999999999753110 0001000 00 01123
Q ss_pred CCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEeccC
Q 004278 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (764)
Q Consensus 214 ~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG 293 (764)
...|..||||||||||++ .+|+++|+.+|+++....+...++++||+||+++|++|||||||
T Consensus 39 ~~~d~~gHGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 39 EGGDKDGHGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCCCCCcHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 456788999999999984 46999999999998873478888999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCccccCCCceEEecCCccCCccceEEEeCCCeEEEeEEeec
Q 004278 294 GGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYA 373 (764)
Q Consensus 294 ~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~~ 373 (764)
.. .. .....+..++.++.++|+++|+||||++.... .+...|.+|+|++...++
T Consensus 101 ~~---~~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 101 GP---GD-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CC---CC-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------
Confidence 87 22 12356677778888999999999999987543 367778899998742111
Q ss_pred CCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccHHH
Q 004278 374 GAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDA 453 (764)
Q Consensus 374 ~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 453 (764)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccceeE
Q 004278 454 VKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFN 533 (764)
Q Consensus 454 ~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 533 (764)
.. +.+++ ++|+.|||.+|+++++.+ .|.
T Consensus 155 ----------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~~~ 182 (222)
T cd07492 155 ----------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------RYL 182 (222)
T ss_pred ----------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------CEE
Confidence 01 11132 369999999999988764 799
Q ss_pred EeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 534 ILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 534 ~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
.++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 183 ~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 183 TVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred EeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=3.8e-39 Score=345.77 Aligned_cols=250 Identities=23% Similarity=0.198 Sum_probs=179.2
Q ss_pred CCCccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCC
Q 004278 123 QGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPI 202 (764)
Q Consensus 123 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 202 (764)
..+|..+++|+||+|+|||||||++||+|.+.... ...++|..+.
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~---------- 73 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND---------- 73 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC----------
Confidence 46899999999999999999999999999754211 0111111110
Q ss_pred CCCCCCccccCCC--CCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHH
Q 004278 203 GGGINETVEFMSP--RDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAA 280 (764)
Q Consensus 203 ~~~~~~~~~~~~~--~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A 280 (764)
....+ .|..+|||||||||+|+..+..+ ..||||+|+|+.+|++... .....+..++.++
T Consensus 74 --------~~~~~~~~~~~gHGT~vAgiiag~~~~~~~--------~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~ 135 (297)
T cd04059 74 --------PDPTPRYDDDNSHGTRCAGEIAAVGNNGIC--------GVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLN 135 (297)
T ss_pred --------CCCCCccccccccCcceeeEEEeecCCCcc--------cccccccceEeEEEecCCc--cccHHHHHHHhcc
Confidence 00112 27889999999999998643311 3799999999999998764 3344555666665
Q ss_pred HhCCCcEEEeccCCCCCCC-CCCCCCHHHHHHHHhhc-----CCcEEEEecCCCCCCCCc----cccCCCceEEecCCcc
Q 004278 281 VNDGVDVISISIGGGDGIS-SPYYLDPIAIGSYGAAS-----RGVFVSSSAGNDGPNGMS----VTNLAPWIVTVGAGTI 350 (764)
Q Consensus 281 ~~~gvdVIn~SlG~~~g~~-~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgAst~ 350 (764)
.+ .++|||||||...... ..........++.++.+ +|++||+||||+|..... .....|++|+|||.+.
T Consensus 136 ~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~ 214 (297)
T cd04059 136 PD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA 214 (297)
T ss_pred cC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC
Confidence 54 4699999999873111 01112233334444433 699999999999973221 2245688999988432
Q ss_pred CCccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHH
Q 004278 351 DRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVK 430 (764)
Q Consensus 351 d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 430 (764)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCc-
Q 004278 431 KAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVN- 509 (764)
Q Consensus 431 ~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~- 509 (764)
.+.++.||++|+.. ++.|||..
T Consensus 215 -------------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~ 237 (297)
T cd04059 215 -------------------------------------------------NGVRASYSEVGSSV--------LASAPSGGS 237 (297)
T ss_pred -------------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCC
Confidence 12567899999874 89999987
Q ss_pred ------EEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 510 ------ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 510 ------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
|+++..... ...|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 238 ~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 238 GNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 666655420 126788999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=8.3e-38 Score=329.68 Aligned_cols=246 Identities=32% Similarity=0.398 Sum_probs=185.8
Q ss_pred CCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCcc
Q 004278 131 YGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETV 210 (764)
Q Consensus 131 ~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~ 210 (764)
+|+||+|+|||+||+++||+|.+..... ..+.... ..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~----------------~~ 37 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVN----------------DA 37 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------ccccccc----------------cc
Confidence 5999999999999999999998642110 0000000 00
Q ss_pred ccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCC-CCCHHHHHHHHHHHHhCCCcEEE
Q 004278 211 EFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA-GCFDSDILAAFDAAVNDGVDVIS 289 (764)
Q Consensus 211 ~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~s~i~~ai~~A~~~gvdVIn 289 (764)
......|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++... .+....+.++++++++.+++|||
T Consensus 38 ~~~~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin 108 (267)
T cd04848 38 GYASNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIIN 108 (267)
T ss_pred cCCCCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEE
Confidence 0123456789999999999998654 2247999999999999998763 25667788999999999999999
Q ss_pred eccCCCCCCCC---------CCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCcc---------ccCCCceEEecCCccC
Q 004278 290 ISIGGGDGISS---------PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV---------TNLAPWIVTVGAGTID 351 (764)
Q Consensus 290 ~SlG~~~g~~~---------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgAst~d 351 (764)
||||....... ....+.+...+..+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 109 ~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~ 188 (267)
T cd04848 109 NSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN 188 (267)
T ss_pred ccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC
Confidence 99999831110 01345666777788999999999999998654332 2345788888884322
Q ss_pred CccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHH
Q 004278 352 RNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKK 431 (764)
Q Consensus 352 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 431 (764)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (267)
T cd04848 189 G------------------------------------------------------------------------------- 189 (267)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeec--ccCCCCCCCCCCCCCCcEEcCCCc
Q 004278 432 AGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVAS--FSARGPNGLNPEILKPDLIAPGVN 509 (764)
Q Consensus 432 ~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~--fSS~Gp~~~~~~~lKPDI~APG~~ 509 (764)
.... ||++|+... .+++.|||.+
T Consensus 190 --------------------------------------------------~~~~~~~s~~~~~~~-----~~~~~apG~~ 214 (267)
T cd04848 190 --------------------------------------------------TIASYSYSNRCGVAA-----NWCLAAPGEN 214 (267)
T ss_pred --------------------------------------------------Ccccccccccchhhh-----hheeecCcCc
Confidence 2233 488887532 3579999999
Q ss_pred EEecccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 510 ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 510 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
|+++.+.... .|..++|||||||+|||++||++|++|+|+++|||++|++||+
T Consensus 215 i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 215 IYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred eeecccCCCC-----------cccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9998773211 7889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-37 Score=328.04 Aligned_cols=351 Identities=26% Similarity=0.407 Sum_probs=264.3
Q ss_pred CCceEEEEeCCCCCCCCCcchHHHHHhhhcCC----------ceeEEEecceeeEEEEEcC-----HHHHHHHhCCCCeE
Q 004278 34 TVKTFIFRIDSQSKPSIFPTHYHWYSSEFASP----------VQILHTYDTVFHGFSATLS-----PDQAASLSRHPSVL 98 (764)
Q Consensus 34 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~y~~~~ng~s~~~~-----~~~~~~L~~~p~V~ 98 (764)
-+..|||+|+.... ...+...+++.+... ......|..-|.-+-++-. .-++++|..+|.|+
T Consensus 48 ve~EyIv~F~~y~~---Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKP---AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred ecceeEEEeccccc---chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 36789999997643 344677788877632 2334455555655555433 23589999999999
Q ss_pred EEEeccccccCcC------------CCCccc------------------CC-----c-------ccCCCccCCCCCCCcE
Q 004278 99 AVIEDQRRQLHTT------------RSPQFL------------------GL-----R-------NQQGLWSESDYGSDVI 136 (764)
Q Consensus 99 ~V~~~~~~~~~~~------------~s~~~~------------------g~-----~-------~~~~~~~~~~~G~gv~ 136 (764)
.|.|.+.+..-.. +...++ +- . .++-+|..|++|++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 9999886644110 000000 00 0 0123899999999999
Q ss_pred EEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCCCC
Q 004278 137 IGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSPR 216 (764)
Q Consensus 137 VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (764)
|||.|||+..+||.|+.--. ..+|. ...+-.
T Consensus 205 vAiFDTGl~~~HPHFrnvKE---RTNWT----------------------------------------------NE~tLd 235 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRNVKE---RTNWT----------------------------------------------NEDTLD 235 (1033)
T ss_pred EEEeecccccCCccccchhh---hcCCc----------------------------------------------Cccccc
Confidence 99999999999999974200 00110 013445
Q ss_pred CCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004278 217 DADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIGGGD 296 (764)
Q Consensus 217 D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG~~~ 296 (764)
|..||||.|||+|||... ..|.||+++|+++|||-+..-.+.+.+++|+.||+....||+|+|+|++.
T Consensus 236 D~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD 303 (1033)
T KOG4266|consen 236 DNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD 303 (1033)
T ss_pred cCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc
Confidence 789999999999999752 36999999999999998874488999999999999999999999999983
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCccccCCC--ceEEecCCccCCccceEEEeCCCeEEEeEEeecC
Q 004278 297 GISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAP--WIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAG 374 (764)
Q Consensus 297 g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~~~ 374 (764)
+.+.|+-.-+......+|++|.|+||+||...+..+.+. .||.||.
T Consensus 304 -----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG--------------------------- 351 (1033)
T KOG4266|consen 304 -----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG--------------------------- 351 (1033)
T ss_pred -----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc---------------------------
Confidence 667788878888899999999999999998887665443 4444443
Q ss_pred CCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccHHHH
Q 004278 375 APLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAV 454 (764)
Q Consensus 375 ~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 454 (764)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCC----CCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccc
Q 004278 455 KAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGL----NPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKT 530 (764)
Q Consensus 455 ~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 530 (764)
.+..+.+|.|||||-+.. .-+++||||++-|.+|.......
T Consensus 352 ----------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~------------- 396 (1033)
T KOG4266|consen 352 ----------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST------------- 396 (1033)
T ss_pred ----------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc-------------
Confidence 123357899999996532 23899999999999998765544
Q ss_pred eeEEeccccchhhhHHHHHHHHhh----hCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCCCCCCccccccc
Q 004278 531 EFNILSGTSMACPHVSGAAALLKS----AHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRA 606 (764)
Q Consensus 531 ~y~~~sGTSmAaP~VAGvaALl~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 606 (764)
+...+||||.|+|.|||+++||-+ +.--++|+.+|++|+..|.+++. ..-|+||+|++|+.++
T Consensus 397 GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg-------------~NMfEQGaGkldLL~s 463 (1033)
T KOG4266|consen 397 GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG-------------PNMFEQGAGKLDLLES 463 (1033)
T ss_pred cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------CchhhccCcchhHHHH
Confidence 678899999999999999999976 33447999999999999998853 3457999999999887
Q ss_pred CC
Q 004278 607 MD 608 (764)
Q Consensus 607 l~ 608 (764)
.+
T Consensus 464 yq 465 (1033)
T KOG4266|consen 464 YQ 465 (1033)
T ss_pred HH
Confidence 64
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-32 Score=284.39 Aligned_cols=197 Identities=24% Similarity=0.219 Sum_probs=141.3
Q ss_pred CCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHH--HhCCCcEEEecc
Q 004278 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAA--VNDGVDVISISI 292 (764)
Q Consensus 215 ~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A--~~~gvdVIn~Sl 292 (764)
..|.++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~----~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI----KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC----CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457899999999999997 3677999998766522 1233466778888 667999999999
Q ss_pred CCCCCCCCC---CCCCHHHHHHHHhhcC-CcEEEEecCCCCCCC-----CccccCCCceEEecCCccCCccceEEEeCCC
Q 004278 293 GGGDGISSP---YYLDPIAIGSYGAASR-GVFVSSSAGNDGPNG-----MSVTNLAPWIVTVGAGTIDRNFPAEVRLGDG 363 (764)
Q Consensus 293 G~~~g~~~~---~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgAst~d~~~~~~~~~~~g 363 (764)
|........ ...+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||......
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 987311100 1233566666666655 999999999999853 233556788999998432111
Q ss_pred eEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccC
Q 004278 364 RRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGI 443 (764)
Q Consensus 364 ~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 443 (764)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCC
Q 004278 444 SNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGL 523 (764)
Q Consensus 444 ~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 523 (764)
....+.||++|-.....+..||||+|||++|++ +.+
T Consensus 164 ------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s--~~~------ 199 (247)
T cd07488 164 ------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL--PDG------ 199 (247)
T ss_pred ------------------------------------cceecccccccCCCCCCCCceeEEEEeeeeEEC--CCC------
Confidence 002345666543332457789999999999998 222
Q ss_pred CCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCC------HHHHHHHHHhc
Q 004278 524 DSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWS------PAAIRSAMMTT 571 (764)
Q Consensus 524 ~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~s------p~~ik~~L~~T 571 (764)
.|..++|||||||||||++|||++++|++. -.++|.+|+.|
T Consensus 200 -------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 200 -------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred -------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 688999999999999999999999988765 45667776665
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-32 Score=304.61 Aligned_cols=240 Identities=28% Similarity=0.372 Sum_probs=183.3
Q ss_pred CCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCC--CCHHHHHHHHHHHHhCCCcEEEeccCCC
Q 004278 218 ADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGVDVISISIGGG 295 (764)
Q Consensus 218 ~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~s~i~~ai~~A~~~gvdVIn~SlG~~ 295 (764)
...|||||||||+|+.....- ..|+||+|+|+.+++.+..-| .+...+..|+..++++.+||||||+|..
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 456999999999999865432 469999999999999776533 4556788999999999999999999998
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCcccc---CCCceEEecCCccCCccceEEEeCCCeEEEeEEee
Q 004278 296 DGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTN---LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLY 372 (764)
Q Consensus 296 ~g~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~ 372 (764)
. ..+.....+...-..+.++||++|.||||.||.-.+++. ....+|.|||--
T Consensus 381 a--~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYV----------------------- 435 (1304)
T KOG1114|consen 381 A--HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYV----------------------- 435 (1304)
T ss_pred C--CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeec-----------------------
Confidence 6 455555666666666779999999999999998777653 344778887721
Q ss_pred cCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccHH
Q 004278 373 AGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD 452 (764)
Q Consensus 373 ~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 452 (764)
...+....|.+.
T Consensus 436 -sp~mm~a~y~~~------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 436 -SPGMMQAEYSVR------------------------------------------------------------------- 447 (1304)
T ss_pred -CHHHHHhhhhhh-------------------------------------------------------------------
Confidence 110000000000
Q ss_pred HHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCcccee
Q 004278 453 AVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEF 532 (764)
Q Consensus 453 ~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 532 (764)
.+-......+|||||+. ||-+-..|.|||+.|.+--.-.. ..-
T Consensus 448 ------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~tl-----------q~~ 490 (1304)
T KOG1114|consen 448 ------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYTL-----------QNS 490 (1304)
T ss_pred ------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhhh-----------hhh
Confidence 01122467899999995 48999999999999866422211 145
Q ss_pred EEeccccchhhhHHHHHHHHhh----hCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCCCCCCCCCcccccccCC
Q 004278 533 NILSGTSMACPHVSGAAALLKS----AHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMD 608 (764)
Q Consensus 533 ~~~sGTSmAaP~VAGvaALl~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 608 (764)
..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||+++++ -.+|.+|.|++++.+|.+
T Consensus 491 qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~-------------id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 491 QLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD-------------IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred hhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc-------------cchhccCcceeehhHHHH
Confidence 7899999999999999999965 57789999999999999998853 256899999999999975
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=4.9e-31 Score=272.41 Aligned_cols=197 Identities=41% Similarity=0.571 Sum_probs=159.2
Q ss_pred CCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHH-hCCCcEEEecc
Q 004278 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV-NDGVDVISISI 292 (764)
Q Consensus 214 ~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~-~~gvdVIn~Sl 292 (764)
...+..+||||||++|++....... .|+||+++|+.+|+...........+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~~---------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGGG---------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCC---------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 4457789999999999998654322 6999999999999988762367788999999999 89999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCCCCCCCC---ccccCCCceEEecCCccCCccceEEEeCCCeEEEe
Q 004278 293 GGGDGISSPYYLDPIAIGSYGAASR-GVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSG 368 (764)
Q Consensus 293 G~~~g~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAst~d~~~~~~~~~~~g~~~~g 368 (764)
|... .. ....+...+..+.++ |+++|+|+||.+.... ..+...|++|+||+.+.+.
T Consensus 110 g~~~---~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 110 GGPG---SP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred CCCC---CC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 9983 22 345667777777777 9999999999998776 4778899999999954321
Q ss_pred EEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCc
Q 004278 369 VSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG 448 (764)
Q Consensus 369 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 448 (764)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHcCCCCeEEEEecceeecccCCCeee-cccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCC
Q 004278 449 LVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVA-SFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDL 527 (764)
Q Consensus 449 ~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a-~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 527 (764)
... .++++|+ |||+.|||.++.......
T Consensus 170 ---------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~~---------- 198 (241)
T cd00306 170 ---------------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTTG---------- 198 (241)
T ss_pred ---------------------------------CccCCcCCCCC--------CceEEeCcCCccCcccCC----------
Confidence 112 4455554 579999999998751111
Q ss_pred ccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004278 528 RKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 571 (764)
Q Consensus 528 ~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~T 571 (764)
...+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 199 -~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 199 -GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 1278999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-23 Score=238.42 Aligned_cols=251 Identities=36% Similarity=0.471 Sum_probs=187.0
Q ss_pred CCCccC--CCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCC
Q 004278 123 QGLWSE--SDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAG 200 (764)
Q Consensus 123 ~~~~~~--~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~ 200 (764)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 356776 89999999999999999999999764211 01122110
Q ss_pred CCCCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCC-CCCCHHHHHHHHHH
Q 004278 201 PIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKN-AGCFDSDILAAFDA 279 (764)
Q Consensus 201 ~~~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-~g~~~s~i~~ai~~ 279 (764)
......|..+|||||++++++....+ .....|+||+++++.+|++... +....++++.+|++
T Consensus 175 ----------~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 237 (508)
T COG1404 175 ----------PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEG 237 (508)
T ss_pred ----------CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHH
Confidence 00124688999999999999843111 1124799999999999999865 34677788999999
Q ss_pred HHhCC--CcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCC-cEEEEecCCCCCCCC----ccccCC--CceEEecCCcc
Q 004278 280 AVNDG--VDVISISIGGGDGISSPYYLDPIAIGSYGAASRG-VFVSSSAGNDGPNGM----SVTNLA--PWIVTVGAGTI 350 (764)
Q Consensus 280 A~~~g--vdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----~~~~~~--p~vitVgAst~ 350 (764)
++..+ +++||||+|.. ........+..++..++..| +++|+|+||.+.... ..+... +.+++|+|...
T Consensus 238 ~~~~~~~~~~in~s~g~~---~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~ 314 (508)
T COG1404 238 AANLGGPADVINLSLGGS---LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314 (508)
T ss_pred HHhcCCCCcEEEecCCCC---ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC
Confidence 99999 99999999985 22223455666666777777 999999999997652 122222 35666665211
Q ss_pred CCccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHH
Q 004278 351 DRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVK 430 (764)
Q Consensus 351 d~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 430 (764)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcE
Q 004278 431 KAGGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNI 510 (764)
Q Consensus 431 ~~Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I 510 (764)
.+.++.||++|+.. ..+++|||.+|
T Consensus 315 -------------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i 339 (508)
T COG1404 315 -------------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNI 339 (508)
T ss_pred -------------------------------------------------CCccccccccCCCC------CcceeCCCccc
Confidence 13678899999752 24999999999
Q ss_pred Ee-----cccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCC-CCCHHHHHHHHHhcccc
Q 004278 511 LA-----AWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP-DWSPAAIRSAMMTTASI 574 (764)
Q Consensus 511 ~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P-~~sp~~ik~~L~~TA~~ 574 (764)
.+ +++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 340 ~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 340 LSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 88 444431 1499999999999999999999999999 89999999998888874
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.9e-23 Score=211.93 Aligned_cols=401 Identities=16% Similarity=0.202 Sum_probs=224.4
Q ss_pred ccccCCCCCceEEEEeCCCCCCCC---CcchHHHHHhhhcCCceeEEEecceeeEEEE---EcCHHHHHHHhCCCCeEEE
Q 004278 27 RTLSTDQTVKTFIFRIDSQSKPSI---FPTHYHWYSSEFASPVQILHTYDTVFHGFSA---TLSPDQAASLSRHPSVLAV 100 (764)
Q Consensus 27 ~~~~~~~~~~~yIV~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~---~~~~~~~~~L~~~p~V~~V 100 (764)
+.+....-.+.|+|+|+++...+. .++.+-+... +....--+.|+-.-+++.- +-+...-.+|.++|.|+.+
T Consensus 23 ag~~~~vftnhflv~l~~g~g~~~ah~va~~hgf~nr--g~~~a~d~eyhf~h~~l~har~rrsl~h~~~l~~dp~v~~a 100 (629)
T KOG3526|consen 23 AGEAVDVFTNHFLVHLKEGGGLEDAHRVAKRHGFINR--GQVAASDNEYHFVHPALVHARTRRSLGHHAKLHNDPEVKMA 100 (629)
T ss_pred cccCcceeeeeEEEEEeccCChHHHHHHHHHhCcccc--ccccccCceeeeeccccchhhhhcccchhhhhccChhHhhh
Confidence 334444557899999999865331 1111111110 0011112344433344332 2223455778889998877
Q ss_pred EeccccccC-------------cC--CCCcccCCc-------------ccCCCccCCCCCCCcEEEEEecCCCCCCCCcc
Q 004278 101 IEDQRRQLH-------------TT--RSPQFLGLR-------------NQQGLWSESDYGSDVIIGVFDTGIWPERRSFS 152 (764)
Q Consensus 101 ~~~~~~~~~-------------~~--~s~~~~g~~-------------~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~ 152 (764)
...+-+... .. .-..+|-|. ++..+|.++++||+|+++|+|.||||-||++.
T Consensus 101 ~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tgknvttaimddgvdymhpdlk 180 (629)
T KOG3526|consen 101 LQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGKNVTTAIMDDGVDYMHPDLK 180 (629)
T ss_pred hhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHHhhcccCCCceEEeecCCchhcCcchh
Confidence 654433220 00 000111111 12358999999999999999999999999996
Q ss_pred CCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCCCCCCCCCccccCCCCC--CCCChhhhHHHhc
Q 004278 153 DLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSPRD--ADGHGTHTASTAA 230 (764)
Q Consensus 153 ~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D--~~gHGThVAgi~A 230 (764)
.+ |+. -..++|.. ++ +.++....| .+.|||.|||-++
T Consensus 181 ~n------------------yna-------easydfss------nd----------pfpyprytddwfnshgtrcagev~ 219 (629)
T KOG3526|consen 181 SN------------------YNA-------EASYDFSS------ND----------PFPYPRYTDDWFNSHGTRCAGEVV 219 (629)
T ss_pred cc------------------cCc-------eeeccccc------CC----------CCCCCcccchhhhccCccccceee
Confidence 32 211 22333333 11 222222233 5899999999888
Q ss_pred ccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHh-CCCcEEEeccCCCCCCCCCCCC----C
Q 004278 231 GRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN-DGVDVISISIGGGDGISSPYYL----D 305 (764)
Q Consensus 231 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~-~gvdVIn~SlG~~~g~~~~~~~----~ 305 (764)
+...++.+ | .|||.+.++..+|+++.. +..|+++|-..--+ ...+|.+-|||... .+-.- +
T Consensus 220 aardngic--g------vgvaydskvagirmldqp---ymtdlieansmghep~kihiysaswgptd---dgktvdgprn 285 (629)
T KOG3526|consen 220 AARDNGIC--G------VGVAYDSKVAGIRMLDQP---YMTDLIEANSMGHEPSKIHIYSASWGPTD---DGKTVDGPRN 285 (629)
T ss_pred eeccCCce--e------eeeeeccccceeeecCCc---hhhhhhhhcccCCCCceEEEEecccCcCC---CCcccCCchh
Confidence 77666544 3 499999999999999865 66777765433322 35789999999873 22222 2
Q ss_pred HHHHHHHHhhc-----CCcEEEEecCCCCCCC-Ccccc--CCCceEEecCCccCCccceEEEeCCCeEEEeEEeecCCCC
Q 004278 306 PIAIGSYGAAS-----RGVFVSSSAGNDGPNG-MSVTN--LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPL 377 (764)
Q Consensus 306 ~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~-~~~~~--~~p~vitVgAst~d~~~~~~~~~~~g~~~~g~~~~~~~~~ 377 (764)
....++.+-++ .|-+.|.|.|..|.+- +.-.. .+-|-|++-+.-.|.+
T Consensus 286 atmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg~------------------------ 341 (629)
T KOG3526|consen 286 ATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDGE------------------------ 341 (629)
T ss_pred HHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCCc------------------------
Confidence 22223222222 4567888888776432 11111 2223333322100000
Q ss_pred CCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCcccHHHHHHH
Q 004278 378 SEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAVKAY 457 (764)
Q Consensus 378 ~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~y 457 (764)
+.-..+.|+.
T Consensus 342 -------------nahydescss--------------------------------------------------------- 351 (629)
T KOG3526|consen 342 -------------NAHYDESCSS--------------------------------------------------------- 351 (629)
T ss_pred -------------cccccchhhH---------------------------------------------------------
Confidence 0001111211
Q ss_pred HHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEecccCCCCCCCCCCCCccceeEEecc
Q 004278 458 ISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSG 537 (764)
Q Consensus 458 ~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 537 (764)
-..+.||+-|.++.. |+. .+ +..+.+...-||
T Consensus 352 -----------------------tlastfsng~rnpet-----------gva--tt------------dlyg~ct~~hsg 383 (629)
T KOG3526|consen 352 -----------------------TLASTFSNGGRNPET-----------GVA--TT------------DLYGRCTRSHSG 383 (629)
T ss_pred -----------------------HHHHHhhcCCcCCCc-----------cee--ee------------ccccceecccCC
Confidence 023568887765431 111 11 111225667899
Q ss_pred ccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccccccCC-CCCCCc--cCCCCCCCCCCCCCCcccccccCCCCceec
Q 004278 538 TSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS-NQPMTD--EATGNASTPYDFGAGHVNLDRAMDPGLVYD 614 (764)
Q Consensus 538 TSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~~~~-~~~~~~--~~~~~~~~~~~~G~G~vn~~~Al~~glv~d 614 (764)
||.|||-.||+.||-++++|.|+..+++.+-.-|.++..-. +..-.. ...-...-+.-||+|.+|+.+.+.-..-+.
T Consensus 384 tsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wk 463 (629)
T KOG3526|consen 384 TSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWK 463 (629)
T ss_pred ccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhc
Confidence 99999999999999999999999999999887777764211 100000 011112234578999999988776555454
Q ss_pred CCchhhhhhhccCCC
Q 004278 615 ITNDDYVNFLCANGY 629 (764)
Q Consensus 615 ~~~~dy~~~lc~~~~ 629 (764)
+.+. .|.|..|.
T Consensus 464 tvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 464 TVPP---RYHCTAGL 475 (629)
T ss_pred cCCC---ceeecccc
Confidence 4444 46687664
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.75 E-value=9.9e-18 Score=184.00 Aligned_cols=103 Identities=31% Similarity=0.384 Sum_probs=81.4
Q ss_pred eeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhC---CCcEEEeccCCCCCCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 004278 247 AKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND---GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSS 323 (764)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~---gvdVIn~SlG~~~g~~~~~~~~~~~~a~~~a~~~Gi~vV~ 323 (764)
+.||||+|+|+.|+++++. ..+++.++.+++.+ +++|||+|||.........+.+.+..++.+|..+||.||+
T Consensus 83 ~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 5799999999999997642 34678888888887 9999999999973111111235677788889999999999
Q ss_pred ecCCCCCCCC-----------ccccCCCceEEecCCccCCc
Q 004278 324 SAGNDGPNGM-----------SVTNLAPWIVTVGAGTIDRN 353 (764)
Q Consensus 324 AAGN~G~~~~-----------~~~~~~p~vitVgAst~d~~ 353 (764)
|+||+|.... .+++.+|||++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35688999999999887654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.96 E-value=3.2e-09 Score=101.01 Aligned_cols=101 Identities=32% Similarity=0.425 Sum_probs=79.6
Q ss_pred CceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCCCccc--------
Q 004278 379 EKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV-------- 450 (764)
Q Consensus 379 ~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-------- 450 (764)
....+++|.+. |....+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+........
T Consensus 25 ~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP 96 (143)
T cd02133 25 GKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIP 96 (143)
T ss_pred CcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEe
Confidence 46788998654 55555666789999999999999999999999999999999998875421110
Q ss_pred --------HHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCC
Q 004278 451 --------GDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPN 492 (764)
Q Consensus 451 --------~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~ 492 (764)
...|.+|+++ .++|.+..+.. ..+++.++.||||||+
T Consensus 97 ~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 97 VVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred EEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 0188888877 67777777665 4678899999999997
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.96 E-value=4.4e-09 Score=97.84 Aligned_cols=107 Identities=57% Similarity=0.941 Sum_probs=83.6
Q ss_pred EEeCCCeEEEeEEeecCCCCCCceeeEEecCC-CCccccccccCCCCCCCccceeEEEEecCCC-chhhHHHHHHHcCce
Q 004278 358 VRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGK-SGVLSASLCMENSLDPNLVRGKIVICDRGSS-PRVAKGLVVKKAGGV 435 (764)
Q Consensus 358 ~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~-~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~Ga~ 435 (764)
++|+||+++.|++++.... ..+++++... ........|.+..+...+++|||+||+|+.| .+.+|..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6799999999999996543 4677776443 2345567899888888999999999999999 899999999999999
Q ss_pred EEEEeccCCCCCcccH---------------HHHHHHHHcCCCCeEE
Q 004278 436 GMILANGISNGEGLVG---------------DAVKAYISSTANPTAT 467 (764)
Q Consensus 436 g~i~~n~~~~~~~~~~---------------~~~~~y~~~~~~~~~~ 467 (764)
|+|++++......... ..|++|+++..+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999887654322110 1888999887776654
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.87 E-value=2.7e-09 Score=91.23 Aligned_cols=73 Identities=33% Similarity=0.582 Sum_probs=56.5
Q ss_pred eEEEEeCCCCCCCC-CcchHHHHHhhhcC--------CceeEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEEeccccc
Q 004278 37 TFIFRIDSQSKPSI-FPTHYHWYSSEFAS--------PVQILHTYDTVFHGFSATLSPDQAASLSRHPSVLAVIEDQRRQ 107 (764)
Q Consensus 37 ~yIV~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 107 (764)
+|||.|++...... ...+.+++.+.+.+ ..++.+.|+..||||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999866554 56677777744332 2789999999999999999999999999999999999999887
Q ss_pred cC
Q 004278 108 LH 109 (764)
Q Consensus 108 ~~ 109 (764)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-06 Score=98.17 Aligned_cols=294 Identities=19% Similarity=0.188 Sum_probs=171.4
Q ss_pred cCCCccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCCcceeeeecccccCcccCCceeeeeeeccccccccCCCCCC
Q 004278 122 QQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGP 201 (764)
Q Consensus 122 ~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~g~~~~~~~~~~ 201 (764)
+...|..+++|+++.|+|.|+|+...||+..+. + -..+..++... .
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~------------------------~~~~s~d~~~~------~--- 67 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-Y------------------------DPLGSYDVNRH------D--- 67 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-c------------------------CcceeEeeecC------C---
Confidence 457899999999999999999999999998642 1 11122222210 0
Q ss_pred CCCCCCCccccCCCCCCCCChhhhHHHhcccCCCCCCccccccceeeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHH
Q 004278 202 IGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV 281 (764)
Q Consensus 202 ~~~~~~~~~~~~~~~D~~gHGThVAgi~AG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~ 281 (764)
+.+..-.+......|||-|++-.+...++... ..|+++++++..++++... .++...+.....
T Consensus 68 -----~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~~----v~~~~~~~~~~~ 130 (431)
T KOG3525|consen 68 -----NDPEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAGC----VSDAVEAPSLGF 130 (431)
T ss_pred -----CCcccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeeee----cccceecccccC
Confidence 00222223334689999999999987644333 2599999999999998643 112222222222
Q ss_pred -hCCCcEEEeccCCCC-CCCCCCCCCHHHHHHHH-----hhcCCcEEEEecCCCCCCCCccc--cCCCceEEecCCccCC
Q 004278 282 -NDGVDVISISIGGGD-GISSPYYLDPIAIGSYG-----AASRGVFVSSSAGNDGPNGMSVT--NLAPWIVTVGAGTIDR 352 (764)
Q Consensus 282 -~~gvdVIn~SlG~~~-g~~~~~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgAst~d~ 352 (764)
..-+|+-+.|||... +..-+--......+... ...+|-+.|+|.||.|....... ...+.+.++.-+..+.
T Consensus 131 ~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~ 210 (431)
T KOG3525|consen 131 GPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQ 210 (431)
T ss_pred CCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccc
Confidence 235789999999873 10011111122223222 24578899999999886554322 1222222221111110
Q ss_pred ccceEEEeCCCeEEEeEEeecCCCCCCceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHc
Q 004278 353 NFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKA 432 (764)
Q Consensus 353 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 432 (764)
|...+ ...++-
T Consensus 211 ---------------------------------------------~~~~p----~y~~~C-------------------- 221 (431)
T KOG3525|consen 211 ---------------------------------------------CGKKP----QYRERC-------------------- 221 (431)
T ss_pred ---------------------------------------------cCCCc----cccccc--------------------
Confidence 00000 000000
Q ss_pred CceEEEEeccCCCCCcccHHHHHHHHHcCCCCeEEEEecceeecccCCCeeecccCCCCCCCCCCCCCCcEEcCCCcEEe
Q 004278 433 GGVGMILANGISNGEGLVGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILA 512 (764)
Q Consensus 433 Ga~g~i~~n~~~~~~~~~~~~~~~y~~~~~~~~~~i~~~~t~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~s 512 (764)
.....+.+|+.+| .. . -|..
T Consensus 222 ----------------------------------------------~~~~~s~~s~~~~-~~--------~-----~~~~ 241 (431)
T KOG3525|consen 222 ----------------------------------------------ASCLASTYSSGGP-TE--------E-----CIVC 241 (431)
T ss_pred ----------------------------------------------cccccccccCCCC-cc--------e-----eeee
Confidence 0113456788887 21 0 1222
Q ss_pred cccCCCCCCCCCCCCccceeEEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHHHHhccccccCCCCCCCccCCCCCCC
Q 004278 513 AWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNAST 592 (764)
Q Consensus 513 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 592 (764)
..... ..-.--.|||.++|..||+.+|.++++|.++..++..++..++.........+.....+...
T Consensus 242 ~~~~~------------~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~- 308 (431)
T KOG3525|consen 242 TDPRH------------SCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLV- 308 (431)
T ss_pred cCCCc------------cccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCcee-
Confidence 21110 13345679999999999999999999999999999999999998765444344332222222
Q ss_pred CCCCCCCcccccccCC
Q 004278 593 PYDFGAGHVNLDRAMD 608 (764)
Q Consensus 593 ~~~~G~G~vn~~~Al~ 608 (764)
...+|+|++|+.+-+.
T Consensus 309 ~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 309 SHLYGFGLLDAKALVS 324 (431)
T ss_pred eeeecccccCcchhhh
Confidence 2378999999987655
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.2e-06 Score=99.44 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=59.2
Q ss_pred eeeecCCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCC-cEEEeccCCCCC--CCCCCCCCHHHHHHHHhhcCCcEEEE
Q 004278 247 AKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGV-DVISISIGGGDG--ISSPYYLDPIAIGSYGAASRGVFVSS 323 (764)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gv-dVIn~SlG~~~g--~~~~~~~~~~~~a~~~a~~~Gi~vV~ 323 (764)
..-+||+|+|..|-+-. ........|+.+....=+ -+|-.||+.... ...+-+-+.+..-.+.|..+||.+++
T Consensus 288 s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 45799999999987722 122222233332222211 233356665421 11111334555666678899999999
Q ss_pred ecCCCCCCCCc--------cccCCCceEEecC
Q 004278 324 SAGNDGPNGMS--------VTNLAPWIVTVGA 347 (764)
Q Consensus 324 AAGN~G~~~~~--------~~~~~p~vitVgA 347 (764)
|+|.+|....+ .++.+|+|++||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999866543 4568999999998
No 49
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.21 E-value=1.5e-05 Score=72.50 Aligned_cols=85 Identities=25% Similarity=0.305 Sum_probs=57.8
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEcC-------CCCe-----------EEEEecCeeEeccCceEEEEEEEEEecccccc
Q 004278 671 SSKSFIRTVTNVGQPNAVYTVKVVSP-------EKGV-----------TVTVKPSRLVFTEGVKKSSFVVTVTADSKNLV 732 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~~ty~~~~~~p-------~~g~-----------~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~ 732 (764)
...+++++++|.|+...+|+++.... ..|. .+...|..|++ ++|++++++|+|+.+.+.-.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 45889999999999999999887611 0121 56677888999 79999999999998642111
Q ss_pred cCCCccEEEEEEEEC-Ccc-EEEEEEE
Q 004278 733 LNDSGAAFGSISWSD-GKH-EVRSPLV 757 (764)
Q Consensus 733 ~~~~~~~~G~~~~~~-~~~-~v~~p~~ 757 (764)
....+ ++|+|.+++ ..+ .+++||+
T Consensus 87 ~~~~~-~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPF-YEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EE-EEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCE-EEEEEEEEcCCCCEEEEeeeC
Confidence 23555 999999998 454 8999996
No 50
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.05 E-value=3.2e-05 Score=71.96 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=53.0
Q ss_pred eeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 382 YPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 382 ~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
+|++......+.....|.+...+..+++|||+|++||.|.|.+|..+++++||.++|++|+...
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~ 91 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSG 91 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCC
Confidence 6766655445556678997655556899999999999999999999999999999999987753
No 51
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.91 E-value=2.4e-05 Score=71.22 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=51.7
Q ss_pred ceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 380 ~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
..+|++... ....|.+..+.+.+++|||+|++||.|.|.+|..+++++||.++|++|+..
T Consensus 20 ~~~~~~~~~-----~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~ 79 (120)
T cd02129 20 TLLPLRNLT-----SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRER 79 (120)
T ss_pred cceeeecCC-----CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCC
Confidence 456777643 346799888877889999999999999999999999999999999999864
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.85 E-value=5e-05 Score=69.74 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=45.0
Q ss_pred cccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 393 LSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 393 ~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
.....|.+..+. .+++|||+||+|+.|.+..|..+++++||.|+|++|+...
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~ 76 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAG 76 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCC
Confidence 345679887764 4599999999999999999999999999999999987764
No 53
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.82 E-value=5.9e-05 Score=70.95 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=45.7
Q ss_pred ccccccCCCC--CCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 394 SASLCMENSL--DPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 394 ~~~~C~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
....|.+... ++.++.|+|+|++||.|.|.+|..+++++||.++|++|+..
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~ 95 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPG 95 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 3467988766 56789999999999999999999999999999999999886
No 54
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.68 E-value=0.00015 Score=66.33 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=43.2
Q ss_pred cccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 395 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
...|.+.. .+.+++|+|+|++||.|.|.+|..+++++||.++|++|+...
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~ 70 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNND 70 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCC
Confidence 46798643 356789999999999999999999999999999999987653
No 55
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.64 E-value=9.6e-05 Score=68.27 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=49.9
Q ss_pred eeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 382 YPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 382 ~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
-++++... .....|.+..+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+..
T Consensus 19 ~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~ 78 (122)
T cd04816 19 APLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSD 78 (122)
T ss_pred EEEEEcCC---CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 35555332 2347799887777889999999999999999999999999999999998765
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.60 E-value=0.00018 Score=66.56 Aligned_cols=49 Identities=29% Similarity=0.283 Sum_probs=44.2
Q ss_pred ccccCCC--CCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 396 SLCMENS--LDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 396 ~~C~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
..|.+.. +...+++|||+||+|+.|.+.+|..+++++||.|+|++++..
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~ 81 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGD 81 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCC
Confidence 3498877 677889999999999999999999999999999999998775
No 57
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.60 E-value=4.4e-05 Score=67.75 Aligned_cols=47 Identities=34% Similarity=0.473 Sum_probs=42.3
Q ss_pred cccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEec
Q 004278 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (764)
Q Consensus 395 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 441 (764)
...|.+......+++|||+||+||.|.+.+|..+++++||.|+|++|
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEe
Confidence 34577777888999999999999999999999999999999999999
No 58
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.55 E-value=0.00074 Score=62.35 Aligned_cols=47 Identities=28% Similarity=0.445 Sum_probs=41.6
Q ss_pred ccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccC
Q 004278 396 SLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGI 443 (764)
Q Consensus 396 ~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 443 (764)
..|.+..+ +.+++|||+|++|+.|.+.+|..+++++||.|+|++|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~ 78 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNV 78 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 46876554 357999999999999999999999999999999999877
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.49 E-value=0.0002 Score=65.42 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=42.9
Q ss_pred cccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 395 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
...|.+. +..+++|||+|++||.|.|.+|..+++++||.++|++|+..
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~ 74 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEP 74 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 4679765 56789999999999999999999999999999999998754
No 60
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.48 E-value=0.00022 Score=66.82 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=38.1
Q ss_pred CCCCccceeEEEEecCCCc-----hhhHHHHHHHcCceEEEEeccC
Q 004278 403 LDPNLVRGKIVICDRGSSP-----RVAKGLVVKKAGGVGMILANGI 443 (764)
Q Consensus 403 ~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~ 443 (764)
+.+.+++|||+|++||.|. |.+|..+++++||.|+|+||+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~ 95 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNA 95 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCC
Confidence 4466899999999999999 9999999999999999999986
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.37 E-value=0.00046 Score=65.18 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=41.8
Q ss_pred cccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 395 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
...|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+..
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~ 94 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQE 94 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCC
Confidence 46798754 478999999999999999999999999999999998764
No 62
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.34 E-value=0.00031 Score=65.23 Aligned_cols=50 Identities=34% Similarity=0.457 Sum_probs=43.1
Q ss_pred cccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 395 ~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
...|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+...
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~ 76 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEG 76 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCC
Confidence 367986543 56789999999999999999999999999999999987543
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.23 E-value=0.00053 Score=65.86 Aligned_cols=50 Identities=26% Similarity=0.228 Sum_probs=43.9
Q ss_pred cccccCCCCCC---CccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 395 ASLCMENSLDP---NLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 395 ~~~C~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
.+.|.+....+ ..+.|+|+|++||.|.|.+|..+++++||.++|++|+..
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~ 102 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDES 102 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCC
Confidence 45798766533 789999999999999999999999999999999999764
No 64
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.22 E-value=0.001 Score=61.67 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=41.4
Q ss_pred cccccCCCCC--CC----ccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 395 ASLCMENSLD--PN----LVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 395 ~~~C~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
...|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~ 77 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD 77 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC
Confidence 3568765432 22 36789999999999999999999999999999999754
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=96.49 E-value=0.0077 Score=56.00 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=46.2
Q ss_pred CceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCC--chhhHHHHHHHcCceEEEEeccCCC
Q 004278 379 EKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS--PRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 379 ~~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
....+++|.+. +.+..+...+++|||++++++.+ .+..|..++.++||.|+|++|+...
T Consensus 22 ~~~~~lV~~g~--------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g 82 (127)
T cd04819 22 EAKGEPVDAGY--------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPG 82 (127)
T ss_pred CeeEEEEEeCC--------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 35678888654 22223345679999999999998 8899999999999999999986543
No 66
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.41 E-value=0.0075 Score=56.77 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=50.6
Q ss_pred ceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCC------------------chhhHHHHHHHcCceEEEEec
Q 004278 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS------------------PRVAKGLVVKKAGGVGMILAN 441 (764)
Q Consensus 380 ~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~n 441 (764)
...|+||.+-.- ....|....+...+++|||+|+.++.| .+..|...++++||.|+|+++
T Consensus 20 ~~aelVfvGyGi--~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~ 97 (142)
T cd04814 20 KDAPLVFVGYGI--KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVH 97 (142)
T ss_pred cceeeEEecCCc--CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEe
Confidence 457788866431 234577777888899999999999877 466799999999999999999
Q ss_pred cCCC
Q 004278 442 GISN 445 (764)
Q Consensus 442 ~~~~ 445 (764)
+...
T Consensus 98 ~~~~ 101 (142)
T cd04814 98 ELAP 101 (142)
T ss_pred CCCc
Confidence 8653
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.17 E-value=0.1 Score=46.20 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=67.2
Q ss_pred CCCCCCCceeeeeccCcCcceeEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecccc
Q 004278 651 PENLNYPSIAALFSTQSRGVSSKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKN 730 (764)
Q Consensus 651 ~~~lN~ps~~~~~~~~~~~~~~~~~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~ 730 (764)
|..|++..+.+. ...+.+.+|+|.|..+..|++..... ..-.++++|..-.+ ++|++.+++|+|....
T Consensus 8 P~~ldFG~v~~g--------~~~~~~v~l~N~s~~p~~f~v~~~~~-~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-- 75 (102)
T PF14874_consen 8 PKELDFGNVFVG--------QTYSRTVTLTNTSSIPARFRVRQPES-LSSFFSVEPPSGFL-APGESVELEVTFSPTK-- 75 (102)
T ss_pred CCEEEeeEEccC--------CEEEEEEEEEECCCCCEEEEEEeCCc-CCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--
Confidence 345666655432 45677889999999999999876552 34567778877666 7999999999999543
Q ss_pred cccCCCccEEEEEEEECCccEEEEEEEEEe
Q 004278 731 LVLNDSGAAFGSISWSDGKHEVRSPLVVTQ 760 (764)
Q Consensus 731 ~~~~~~~~~~G~~~~~~~~~~v~~p~~v~~ 760 (764)
..+. ..+.|...-.+..+.+|+-++.
T Consensus 76 --~~g~--~~~~l~i~~e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 76 --PLGD--YEGSLVITTEGGSFEIPVKAEV 101 (102)
T ss_pred --CCce--EEEEEEEEECCeEEEEEEEEEE
Confidence 2222 4688887766678888876653
No 68
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.16 E-value=0.013 Score=54.87 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=49.9
Q ss_pred ceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCc------------hhhHHHHHHHcCceEEEEeccCCC
Q 004278 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSP------------RVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 380 ~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
..-++||.+-.. ....|....+...+++|||+|+.++.|. +..|..++.++||.|+|++++...
T Consensus 22 v~gelVfvGyG~--~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGL--VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCc--CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 456777765432 2345777777778999999999998763 568999999999999999998654
No 69
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.15 E-value=0.0088 Score=58.65 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=36.9
Q ss_pred CCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 405 PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 405 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
..+++|||+|+++|.|.+.+|..+|+++||+|+|++++..
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 4578999999999999999999999999999999999753
No 70
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.95 E-value=0.032 Score=53.21 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=48.6
Q ss_pred ceeeEEecCCCCccccccccCCCCCCCccceeEEEEecCC------------------CchhhHHHHHHHcCceEEEEec
Q 004278 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGS------------------SPRVAKGLVVKKAGGVGMILAN 441 (764)
Q Consensus 380 ~~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~n 441 (764)
..-++||.+-.. ....|....+...+++|||+|+.++. |.+..|..++++.||.|+|+++
T Consensus 20 vtg~lVfvGyGi--~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 20 VTAPVVFAGYGI--TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred ceEeEEEecCCc--CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 456777765421 23457666667789999999998763 5667899999999999999999
Q ss_pred cCCC
Q 004278 442 GISN 445 (764)
Q Consensus 442 ~~~~ 445 (764)
+...
T Consensus 98 d~~~ 101 (151)
T cd04822 98 GPNS 101 (151)
T ss_pred CCcc
Confidence 8653
No 71
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.91 E-value=0.055 Score=54.94 Aligned_cols=58 Identities=28% Similarity=0.301 Sum_probs=46.1
Q ss_pred ceeeEEecCCCCccccccccCCCCC-----CCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 380 KMYPLIYPGKSGVLSASLCMENSLD-----PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 380 ~~~plv~~~~~~~~~~~~C~~~~~~-----~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
..-++||.+- |....++ ..+++|||+|+.++.+.+..|..+++++||.|+|++++..+
T Consensus 45 v~g~lVyvny--------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 45 VTAELVYANY--------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred ceEEEEEcCC--------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4567787543 5443322 56899999999999998889999999999999999998654
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.70 E-value=0.039 Score=52.04 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=37.0
Q ss_pred CccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 406 NLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 406 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
-+++|||+|++.|...+..|..++++.||.|+|+|.+..+
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 5799999999999999999999999999999999988654
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.39 E-value=0.22 Score=41.83 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=37.6
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecc
Q 004278 671 SSKSFIRTVTNVGQPN-AVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADS 728 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~-~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 728 (764)
...+++.+|+|.|+.+ ...++++..| .|-.+...|..+.--++|+++++++++++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P-~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLP-EGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCC-CCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 5788999999999755 4588888899 9999888888776448999999999999876
No 74
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=92.49 E-value=0.14 Score=48.01 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCCccceeEEEEecCCC------chhhH-------HHHHHHcCceEEEEeccC
Q 004278 404 DPNLVRGKIVICDRGSS------PRVAK-------GLVVKKAGGVGMILANGI 443 (764)
Q Consensus 404 ~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~ 443 (764)
...+++|||++++++.| .+..| ...++++||.|+|++|..
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~ 86 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIG 86 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecC
Confidence 45689999999999999 88887 689999999999999864
No 75
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.87 E-value=0.14 Score=47.85 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=46.8
Q ss_pred eeeEEecCCCCccccccccCCCCCCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCCC
Q 004278 381 MYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG 446 (764)
Q Consensus 381 ~~plv~~~~~~~~~~~~C~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 446 (764)
.+++|.+. ....|.... +.-...+.+.+++||.|+|..|..+++++||..+|+.++.+..
T Consensus 65 ~~~lV~ad-----Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~ 124 (193)
T KOG3920|consen 65 NLELVLAD-----PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYE 124 (193)
T ss_pred CcceeecC-----ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCc
Confidence 45666543 356786533 3345678999999999999999999999999999998876653
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=90.89 E-value=2.5 Score=38.54 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=40.1
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEeccc
Q 004278 672 SKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSK 729 (764)
Q Consensus 672 ~~~~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~ 729 (764)
.-..+.+++|.++.+.+|++++..+ +|+++......+++ ++|++.++.|.+.++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~-~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGL-PGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES--SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecC-CCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 3457889999999999999999998 89999665578888 79999999999998863
No 77
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=86.78 E-value=2.4 Score=40.79 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=33.5
Q ss_pred CCCCCccceeEEEEecCCCch-------------------hhHHHHHHHcCceEEEEeccCC
Q 004278 402 SLDPNLVRGKIVICDRGSSPR-------------------VAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 402 ~~~~~~~~gkivl~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
.+..-|++|||||+.++...+ ..|...+.+.||.|+|++.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 445678999999998664322 2488999999999999987644
No 78
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=83.95 E-value=19 Score=32.78 Aligned_cols=53 Identities=21% Similarity=0.132 Sum_probs=40.6
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEc---CC---CCeEEEEecCeeEeccCceEEEEEEEEEe
Q 004278 672 SKSFIRTVTNVGQPNAVYTVKVVS---PE---KGVTVTVKPSRLVFTEGVKKSSFVVTVTA 726 (764)
Q Consensus 672 ~~~~~rtvtNvg~~~~ty~~~~~~---p~---~g~~v~v~p~~l~~~~~~~~~~~~vt~~~ 726 (764)
..+.+.+|+|.++.+..+.+.+.. .. +.-.+.|+|..+.+ ++|+++.+.| +..
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 356678999999988788887764 10 11257799999999 7999999999 663
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=83.65 E-value=24 Score=32.37 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=49.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEcC---CCC-eEEE------------------EecCeeEeccCceEEEEEEEEEecc
Q 004278 671 SSKSFIRTVTNVGQPNAVYTVKVVSP---EKG-VTVT------------------VKPSRLVFTEGVKKSSFVVTVTADS 728 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~~ty~~~~~~p---~~g-~~v~------------------v~p~~l~~~~~~~~~~~~vt~~~~~ 728 (764)
.+.+++.+|+|.++...+|.+.+... ..| +..+ -.|..+++ +++++++++++++.+.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl-~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTL-PPNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEE-CCCCEEEEEEEEEcCC
Confidence 67889999999999999999886421 022 1110 11344777 7999999999999876
Q ss_pred cccccCCCccEEEEEEEEC
Q 004278 729 KNLVLNDSGAAFGSISWSD 747 (764)
Q Consensus 729 ~~~~~~~~~~~~G~~~~~~ 747 (764)
..-.+. .-|.|.+..
T Consensus 106 ---~~f~G~-ilGGi~~~e 120 (121)
T PF06030_consen 106 ---KAFDGI-ILGGIYFSE 120 (121)
T ss_pred ---CCcCCE-EEeeEEEEe
Confidence 222334 667777653
No 80
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=81.22 E-value=1.7 Score=48.16 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=37.2
Q ss_pred CCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCC
Q 004278 405 PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGIS 444 (764)
Q Consensus 405 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 444 (764)
..+.++|+++..||.|.|.+|...++++||.++++.|+..
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~ 130 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKK 130 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCch
Confidence 5678999999999999999999999999999999999854
No 81
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=77.38 E-value=1.7 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.8
Q ss_pred CCCCCCcEEEEEecCCCCCCCCcc
Q 004278 129 SDYGSDVIIGVFDTGIWPERRSFS 152 (764)
Q Consensus 129 ~~~G~gv~VgVIDtGid~~Hp~f~ 152 (764)
.+.|+||+|||+|||+||.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999998775
No 82
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=73.56 E-value=19 Score=31.86 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=39.5
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEec
Q 004278 672 SKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTAD 727 (764)
Q Consensus 672 ~~~~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~ 727 (764)
..+.+.+|+|.++..--|.+....| .. ..|.|..-.+ .+|++.++.|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~-~~--y~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNP-NR--YRVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-T-TT--EEEESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCC-ce--EEecCCCEEE-CCCCEEEEEEEEEec
Confidence 4667789999999999999998888 54 5568998877 799999999998864
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.45 E-value=19 Score=40.32 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=50.2
Q ss_pred eeEEEEEEEEecCCCCeE-EEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEeccc
Q 004278 671 SSKSFIRTVTNVGQPNAV-YTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSK 729 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~~t-y~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~ 729 (764)
.+.++...+.|.|+.+.| -.+++..| .|-.+.|.|.++---++|+.+++++|++++.+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~P-qgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~ 455 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGP-QGWEIEVDESTIPSLEPGESKTVSLTITVPED 455 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCC-ccceEEECcccccccCCCCcceEEEEEEcCCC
Confidence 467888999999987765 67899999 99999999998765689999999999999874
No 84
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.00 E-value=4.3 Score=43.89 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=40.6
Q ss_pred ccccCCCC---CCCccceeEEEEecCCCchhhHHHHHHHcCceEEEEeccCCC
Q 004278 396 SLCMENSL---DPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (764)
Q Consensus 396 ~~C~~~~~---~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 445 (764)
.+|.+-.. ........++++.||.|.|.+|..+++.+|..++|++|+...
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~ 115 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGS 115 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCC
Confidence 45665322 235567889999999999999999999999999999997665
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=66.90 E-value=22 Score=40.24 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=47.1
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecc
Q 004278 672 SKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADS 728 (764)
Q Consensus 672 ~~~~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 728 (764)
.-..+..+.|.+..+.+|+++++.. +|.++...++.+++ ++||+.++.|++..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~-~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGL-PGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecC-CCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 4457788999999999999999998 89888776557888 7999999999999875
No 86
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=57.76 E-value=86 Score=29.50 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=50.0
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEecccccccCCCccEEEEEEEEC
Q 004278 671 SSKSFIRTVTNVGQPN-AVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGAAFGSISWSD 747 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~-~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~G~~~~~~ 747 (764)
....+...+-|..+.. ..-++....- .++++.-.|..+++ .+++.++++.++++.. ...+. .||.|+|..
T Consensus 69 ~DIvLDvllvNqT~~tLqNl~vElat~-gdLklve~p~~~tL-~P~~~~~i~~~iKVsS----tetGv-IfG~I~Yd~ 139 (140)
T PF07718_consen 69 YDIVLDVLLVNQTNETLQNLTVELATL-GDLKLVERPQPITL-APHGFARIKATIKVSS----TETGV-IFGNIVYDG 139 (140)
T ss_pred eeEEEEEEEEeCChhhhhcEEEEEEec-CCcEEccCCCceee-CCCcEEEEEEEEEEEe----ccCCE-EEEEEEEec
Confidence 3455666677776432 2334444444 67898888999998 7999999999999875 33455 999999864
No 87
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=57.27 E-value=40 Score=24.90 Aligned_cols=44 Identities=25% Similarity=0.198 Sum_probs=25.9
Q ss_pred EEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEE
Q 004278 677 RTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTV 724 (764)
Q Consensus 677 rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~ 724 (764)
++++|.|+.+..-. .+... -|-.. ++.+.=.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~ts-CgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTS-CGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEc-cCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 57889998765432 23333 44332 22232334 799999988874
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=54.10 E-value=79 Score=27.01 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=32.8
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEEec
Q 004278 671 SSKSFIRTVTNVGQPN-AVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVTAD 727 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~-~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~ 727 (764)
...+++.+|+|.|... ..+.+.+... |..+. +...-.+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~--~~~~~-~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD--GNSVS-TVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET--TEEEE-EEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC--Cceec-cEEECCc-CCCcEEEEEEEEEeC
Confidence 5788999999999864 5677776554 44431 1111244 689998888888765
No 89
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=50.31 E-value=1.2e+02 Score=26.82 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=36.3
Q ss_pred eeEEEEEEEEecCCCC-eE-----EEEEEEcCCCCeE---EEEecCeeEeccCceEEEEEEEEEecc
Q 004278 671 SSKSFIRTVTNVGQPN-AV-----YTVKVVSPEKGVT---VTVKPSRLVFTEGVKKSSFVVTVTADS 728 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~-~t-----y~~~~~~p~~g~~---v~v~p~~l~~~~~~~~~~~~vt~~~~~ 728 (764)
...++..+++|..+.. .+ -..++..+ |+. .......+++ ++|++.++++++....
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt--G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT--GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECT--TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEEC--CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 5678889999999876 44 33334455 774 4566666777 7999999999998654
No 90
>COG1470 Predicted membrane protein [Function unknown]
Probab=42.01 E-value=3.4e+02 Score=30.76 Aligned_cols=56 Identities=16% Similarity=0.318 Sum_probs=44.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEE-cCCCCeEEEEec-----CeeEeccCceEEEEEEEEEecc
Q 004278 671 SSKSFIRTVTNVGQPNAVYTVKVV-SPEKGVTVTVKP-----SRLVFTEGVKKSSFVVTVTADS 728 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~~ty~~~~~-~p~~g~~v~v~p-----~~l~~~~~~~~~~~~vt~~~~~ 728 (764)
.+..++.++.|.|..+.+|..++. .| +|-+....- .++.+ .+||++.++|.+....
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~p-e~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLP-EGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCC-CCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 466788899999999999999998 67 776554332 24566 6999999999998765
No 91
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=37.51 E-value=2.2e+02 Score=24.25 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=32.0
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEcCCCCeEEEEecCeeEeccCceEEEEEEEEE
Q 004278 672 SKSFIRTVTNVGQPNAVYTVKVVSPEKGVTVTVKPSRLVFTEGVKKSSFVVTVT 725 (764)
Q Consensus 672 ~~~~~rtvtNvg~~~~ty~~~~~~p~~g~~v~v~p~~l~~~~~~~~~~~~vt~~ 725 (764)
...+..+++|.|....++++.-..- . .-.|.++++ ++|+++++...+.
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y-~----~~~~~~~~v-~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAY-G----GGGPWTYTV-AAGQTVSLTWPLA 66 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCc-C----CCCCEEEEE-CCCCEEEEEEeec
Confidence 3468889999998888877765221 1 012456666 6888887777663
No 92
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=33.92 E-value=48 Score=35.28 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=49.7
Q ss_pred eeeecCCCcEEEEEeecCCCC------CCH----------HHHHHHHHHHHhCCCcEEEeccCCCC---------CCCCC
Q 004278 247 AKGVAPKARLAVYKVCWKNAG------CFD----------SDILAAFDAAVNDGVDVISISIGGGD---------GISSP 301 (764)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~~g------~~~----------s~i~~ai~~A~~~gvdVIn~SlG~~~---------g~~~~ 301 (764)
++-+||-++|-+-..+|.... +.. ..=+.-+++|+++|.+||+ |.|... +.-..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 567899998888777765411 111 1113557789999999996 556542 01123
Q ss_pred CCCCHHHHHHHHh-----hcCCcEEEEecC
Q 004278 302 YYLDPIAIGSYGA-----ASRGVFVSSSAG 326 (764)
Q Consensus 302 ~~~~~~~~a~~~a-----~~~Gi~vV~AAG 326 (764)
...||++....+- ...||.||+|+-
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 4468888777643 245889999853
No 93
>PLN03080 Probable beta-xylosidase; Provisional
Probab=32.36 E-value=1.1e+02 Score=37.56 Aligned_cols=54 Identities=19% Similarity=0.095 Sum_probs=32.6
Q ss_pred eEEEEEEEEecCCCCeEEEEE--EEcCCCCeE----EEEecCeeEeccCceEEEEEEEEEe
Q 004278 672 SKSFIRTVTNVGQPNAVYTVK--VVSPEKGVT----VTVKPSRLVFTEGVKKSSFVVTVTA 726 (764)
Q Consensus 672 ~~~~~rtvtNvg~~~~ty~~~--~~~p~~g~~----v~v~p~~l~~~~~~~~~~~~vt~~~ 726 (764)
..+++.+|||+|+......+. +..|...+. --+--+++.+ ++||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 478999999999865544443 334411111 1111223445 68999998888875
No 94
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=31.52 E-value=1.4e+02 Score=36.70 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=42.7
Q ss_pred CCCCCCCCceeeeeccCcC----cceeEEEEEEEEecCCCCeE--EEEEEEcCCCCeEEEEec-------CeeEeccCce
Q 004278 650 RPENLNYPSIAALFSTQSR----GVSSKSFIRTVTNVGQPNAV--YTVKVVSPEKGVTVTVKP-------SRLVFTEGVK 716 (764)
Q Consensus 650 ~~~~lN~ps~~~~~~~~~~----~~~~~~~~rtvtNvg~~~~t--y~~~~~~p~~g~~v~v~p-------~~l~~~~~~~ 716 (764)
+..-|.|-.|......-.. .....+++.+|||+|+.+.. -.+-+..| .+ .+. .| +++.+ ++||
T Consensus 642 FG~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~-~~-~~~-~P~k~L~gF~Kv~L-~pGe 717 (765)
T PRK15098 642 FGYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDV-TA-SMS-RPVKELKGFEKIML-KPGE 717 (765)
T ss_pred ccCCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCC-CC-CCC-CHHHhccCceeEeE-CCCC
Confidence 4456777666654321110 00467899999999985543 33334445 22 111 23 23445 7999
Q ss_pred EEEEEEEEEec
Q 004278 717 KSSFVVTVTAD 727 (764)
Q Consensus 717 ~~~~~vt~~~~ 727 (764)
++++++++...
T Consensus 718 s~~V~~~l~~~ 728 (765)
T PRK15098 718 TQTVSFPIDIE 728 (765)
T ss_pred eEEEEEeecHH
Confidence 99998888754
No 95
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.37 E-value=44 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=19.4
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhccc
Q 004278 549 AALLKSAHPDWSPAAIRSAMMTTAS 573 (764)
Q Consensus 549 aALl~~~~P~~sp~~ik~~L~~TA~ 573 (764)
+--|++.+|+|++..|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3457889999999999999976543
No 96
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=30.94 E-value=1.4e+02 Score=24.94 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=28.5
Q ss_pred EEEEecCeeEeccCceEEEEEEEEEecccccccCCCccEEEEEEEECCc
Q 004278 701 TVTVKPSRLVFTEGVKKSSFVVTVTADSKNLVLNDSGAAFGSISWSDGK 749 (764)
Q Consensus 701 ~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~G~~~~~~~~ 749 (764)
.+++.|..+++ ..|+++.|++++.... .. ....+.|...+
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~----~~----~~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS----AK----VTGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC----CC----ccceEEEEECC
Confidence 57889999998 6999999999976433 11 13568887643
No 97
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=28.42 E-value=3.6e+02 Score=22.75 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=26.0
Q ss_pred EEEEEEEEecCCCCeE--------EEEEEEcCCCCeEEE---------EecCeeEeccCceEEEEEEEEEecc
Q 004278 673 KSFIRTVTNVGQPNAV--------YTVKVVSPEKGVTVT---------VKPSRLVFTEGVKKSSFVVTVTADS 728 (764)
Q Consensus 673 ~~~~rtvtNvg~~~~t--------y~~~~~~p~~g~~v~---------v~p~~l~~~~~~~~~~~~vt~~~~~ 728 (764)
..++.+|+|.++.+.+ |.+.+..+ .|-.|- -.-...++ ++||+++|+.++....
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~-~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDK-EGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-T-T--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECC-CCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 3466778888765433 44445444 343332 22224455 6899999998887543
No 98
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=25.96 E-value=40 Score=23.21 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.6
Q ss_pred chhhhHHHHHHHH
Q 004278 540 MACPHVSGAAALL 552 (764)
Q Consensus 540 mAaP~VAGvaALl 552 (764)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 99
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=25.67 E-value=32 Score=15.91 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=4.1
Q ss_pred cccCCC
Q 004278 485 SFSARG 490 (764)
Q Consensus 485 ~fSS~G 490 (764)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 100
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=25.52 E-value=2.7e+02 Score=21.28 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=21.0
Q ss_pred eeEEEEEEEEecCCCCeE-EEEEEEcCCCCeEE
Q 004278 671 SSKSFIRTVTNVGQPNAV-YTVKVVSPEKGVTV 702 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~~t-y~~~~~~p~~g~~v 702 (764)
...+++.+|+|.|....+ ..+.-..| +|+..
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP-~g~~~ 43 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILP-SGTTF 43 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCC-CCCEE
Confidence 578899999999986654 33333456 66554
No 101
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=25.11 E-value=3.7e+02 Score=24.10 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=34.6
Q ss_pred eeec-CCCcEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEeccCCC
Q 004278 248 KGVA-PKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIGGG 295 (764)
Q Consensus 248 ~GvA-P~A~l~~~kv~~~~~g~~~s~i~~ai~~A~~~gvdVIn~SlG~~ 295 (764)
.... ++++|+.+-- +. ||....++.-+++..+.|+|+|-+|--..
T Consensus 31 ~~y~~~~~elvgf~~--Cg-GCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 31 ARYDDEDVELVGFFT--CG-GCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred ccCCCCCeEEEEEee--CC-CCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 3444 4677777644 44 78888999999999999999999987665
No 102
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.44 E-value=1.6e+02 Score=24.10 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=20.3
Q ss_pred eeEEEEEEEEecCCCCeE-EEEEEEcCCCCeEE
Q 004278 671 SSKSFIRTVTNVGQPNAV-YTVKVVSPEKGVTV 702 (764)
Q Consensus 671 ~~~~~~rtvtNvg~~~~t-y~~~~~~p~~g~~v 702 (764)
...+++.+|+|.|+.... ..+.-..| +|+.+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp-~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLP-AGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCC-CCCEE
Confidence 578899999999986533 33333345 56544
No 103
>PRK15019 CsdA-binding activator; Provisional
Probab=23.66 E-value=67 Score=30.58 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=27.2
Q ss_pred EeccccchhhhHHHHHHHHhhhCCCCCHHHHHH
Q 004278 534 ILSGTSMACPHVSGAAALLKSAHPDWSPAAIRS 566 (764)
Q Consensus 534 ~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~ 566 (764)
.+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 67999999999999999999999975
No 104
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=22.49 E-value=74 Score=29.95 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=28.2
Q ss_pred EEeccccchhhhHHHHHHHHhhhCCCCCHHHHHHH
Q 004278 533 NILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSA 567 (764)
Q Consensus 533 ~~~sGTSmAaP~VAGvaALl~~~~P~~sp~~ik~~ 567 (764)
..+.|.| =|+.|-|++|||.+.+-+.||++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3355666 589999999999999999999998743
No 105
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=22.37 E-value=2.9e+02 Score=28.48 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=36.4
Q ss_pred EEEEEEEEecCCCCeEEEEEEE---cC----C--------CCeEEEEecCeeEeccCceEEEEEEEEE
Q 004278 673 KSFIRTVTNVGQPNAVYTVKVV---SP----E--------KGVTVTVKPSRLVFTEGVKKSSFVVTVT 725 (764)
Q Consensus 673 ~~~~rtvtNvg~~~~ty~~~~~---~p----~--------~g~~v~v~p~~l~~~~~~~~~~~~vt~~ 725 (764)
.....+|.|.|+.+..+.+.+. .| + +--.+-++|..|.+ ++|+++.+.|.-.
T Consensus 33 ~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~l 99 (234)
T PRK15308 33 EATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISL 99 (234)
T ss_pred ceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEc
Confidence 3456788899998887777763 22 0 01146788999999 7888888776654
No 106
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.36 E-value=72 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=22.3
Q ss_pred eEEeccccchhhhHHHHHH------HHhhhCCCCCHHHHHHHHH
Q 004278 532 FNILSGTSMACPHVSGAAA------LLKSAHPDWSPAAIRSAMM 569 (764)
Q Consensus 532 y~~~sGTSmAaP~VAGvaA------Ll~~~~P~~sp~~ik~~L~ 569 (764)
--.+.||=+..=.|....+ -+.+.||.+++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3456677666555544432 3455699999999999884
Done!