Query 004279
Match_columns 764
No_of_seqs 597 out of 4103
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 20:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.2E-88 2.5E-93 779.4 60.7 658 10-746 124-817 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.2E-79 2.6E-84 704.9 66.1 602 48-713 47-651 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.6E-72 3.6E-77 630.4 50.8 532 156-746 85-655 (697)
4 PLN03218 maturation of RBCL 1; 100.0 7.9E-69 1.7E-73 600.6 62.8 516 119-684 367-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2E-67 4.4E-72 589.3 63.2 516 84-650 367-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.3E-63 2.8E-68 558.7 48.8 468 52-575 87-559 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-32 4.2E-37 323.5 70.2 632 7-713 261-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-31 2.5E-36 316.9 72.8 606 3-678 223-832 (899)
9 PRK11447 cellulose synthase su 100.0 7.7E-23 1.7E-27 241.1 67.7 619 2-677 57-739 (1157)
10 PRK11447 cellulose synthase su 99.9 2.2E-21 4.8E-26 228.8 68.5 595 9-678 30-700 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.5E-18 3.2E-23 195.2 62.2 602 17-677 54-705 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.1E-17 2.3E-22 188.3 63.6 552 62-677 54-671 (987)
13 KOG2002 TPR-containing nuclear 99.9 3.3E-16 7.1E-21 164.4 49.4 562 64-679 176-799 (1018)
14 KOG4626 O-linked N-acetylgluco 99.8 8.6E-18 1.9E-22 166.9 35.2 439 58-623 54-499 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 2.3E-18 4.9E-23 171.0 30.1 362 10-423 51-416 (966)
16 PRK11788 tetratricopeptide rep 99.8 2.6E-18 5.6E-23 181.0 31.5 296 99-430 47-354 (389)
17 PRK11788 tetratricopeptide rep 99.8 5.5E-18 1.2E-22 178.5 33.4 296 59-392 42-347 (389)
18 KOG4422 Uncharacterized conser 99.8 9.7E-15 2.1E-19 139.3 42.7 474 158-742 116-611 (625)
19 KOG2002 TPR-containing nuclear 99.8 6E-14 1.3E-18 147.7 52.4 550 62-677 138-744 (1018)
20 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.7E-20 171.0 44.4 427 84-617 12-463 (765)
21 PRK15174 Vi polysaccharide exp 99.8 4.6E-16 1E-20 171.7 38.5 326 57-423 47-380 (656)
22 TIGR00990 3a0801s09 mitochondr 99.8 7.2E-15 1.6E-19 163.1 47.3 423 161-677 130-570 (615)
23 TIGR00990 3a0801s09 mitochondr 99.8 8.9E-15 1.9E-19 162.4 48.0 155 486-642 408-570 (615)
24 KOG4422 Uncharacterized conser 99.8 2.8E-14 6.1E-19 136.2 41.6 437 59-646 122-593 (625)
25 PRK15174 Vi polysaccharide exp 99.8 2.5E-15 5.4E-20 165.9 39.5 294 59-392 83-381 (656)
26 PRK10049 pgaA outer membrane p 99.8 2.9E-14 6.4E-19 161.0 44.6 189 487-678 247-456 (765)
27 PRK14574 hmsH outer membrane p 99.7 2E-13 4.3E-18 151.0 47.9 452 60-616 42-519 (822)
28 PRK14574 hmsH outer membrane p 99.7 4.4E-13 9.5E-18 148.2 49.8 436 131-678 43-513 (822)
29 KOG4318 Bicoid mRNA stability 99.7 3.4E-14 7.4E-19 147.5 35.1 556 107-710 10-652 (1088)
30 KOG2076 RNA polymerase III tra 99.7 2.4E-11 5.2E-16 127.7 52.6 592 52-678 139-769 (895)
31 KOG2003 TPR repeat-containing 99.7 1.3E-12 2.8E-17 125.7 35.9 184 487-676 534-720 (840)
32 KOG2076 RNA polymerase III tra 99.6 1.6E-10 3.4E-15 121.7 49.3 616 8-677 140-848 (895)
33 KOG0495 HAT repeat protein [RN 99.6 1.8E-09 4E-14 109.3 54.0 523 103-694 362-895 (913)
34 KOG4318 Bicoid mRNA stability 99.6 1.6E-11 3.5E-16 128.1 39.0 562 52-675 25-765 (1088)
35 KOG0495 HAT repeat protein [RN 99.6 6.3E-10 1.4E-14 112.6 48.8 511 67-650 361-885 (913)
36 KOG1915 Cell cycle control pro 99.5 1.9E-08 4.2E-13 98.2 48.8 454 99-642 85-584 (677)
37 PRK10747 putative protoheme IX 99.5 4.2E-11 9E-16 124.7 32.0 284 62-390 94-388 (398)
38 PF13429 TPR_15: Tetratricopep 99.5 1E-13 2.2E-18 137.9 12.0 267 7-321 9-276 (280)
39 KOG2003 TPR repeat-containing 99.5 5.6E-10 1.2E-14 107.9 34.7 426 203-678 211-689 (840)
40 TIGR00540 hemY_coli hemY prote 99.4 2.7E-10 5.9E-15 119.4 32.6 289 62-389 94-396 (409)
41 PF13429 TPR_15: Tetratricopep 99.4 9.6E-13 2.1E-17 130.9 13.3 258 59-354 15-274 (280)
42 COG2956 Predicted N-acetylgluc 99.4 1.9E-10 4.1E-15 106.7 26.5 275 60-372 43-324 (389)
43 KOG1915 Cell cycle control pro 99.4 3.6E-08 7.9E-13 96.4 43.0 428 205-678 85-536 (677)
44 PRK10747 putative protoheme IX 99.4 1.8E-09 3.8E-14 112.6 33.1 117 306-423 97-215 (398)
45 TIGR00540 hemY_coli hemY prote 99.3 3.9E-09 8.4E-14 110.7 33.3 127 297-425 86-218 (409)
46 COG3071 HemY Uncharacterized e 99.3 2.9E-09 6.3E-14 102.3 28.8 286 64-390 96-388 (400)
47 KOG1155 Anaphase-promoting com 99.3 4.1E-08 9E-13 95.9 36.9 356 223-674 160-532 (559)
48 KOG1126 DNA-binding cell divis 99.3 2.5E-10 5.3E-15 116.5 22.8 283 66-391 333-619 (638)
49 KOG1126 DNA-binding cell divis 99.3 3.3E-10 7.2E-15 115.6 23.6 281 103-423 335-619 (638)
50 KOG2047 mRNA splicing factor [ 99.3 1.7E-06 3.7E-11 88.3 49.5 295 365-672 389-717 (835)
51 KOG1156 N-terminal acetyltrans 99.3 9.3E-08 2E-12 97.5 40.3 491 126-700 12-528 (700)
52 KOG3785 Uncharacterized conser 99.3 1.3E-07 2.9E-12 89.0 37.4 137 511-653 361-498 (557)
53 PF13041 PPR_2: PPR repeat fam 99.3 5.3E-12 1.1E-16 87.2 6.4 50 507-556 1-50 (50)
54 COG2956 Predicted N-acetylgluc 99.3 9.5E-09 2.1E-13 95.7 29.1 118 305-423 47-169 (389)
55 KOG1155 Anaphase-promoting com 99.3 7.6E-09 1.6E-13 100.9 29.2 307 62-423 237-552 (559)
56 KOG1156 N-terminal acetyltrans 99.3 9.3E-07 2E-11 90.5 44.8 474 57-606 12-509 (700)
57 KOG0547 Translocase of outer m 99.3 3.6E-08 7.8E-13 97.0 32.2 191 480-675 363-563 (606)
58 KOG0985 Vesicle coat protein c 99.3 1.5E-06 3.3E-11 92.8 45.8 492 125-672 609-1243(1666)
59 KOG2047 mRNA splicing factor [ 99.2 8.2E-07 1.8E-11 90.5 41.3 349 38-429 159-584 (835)
60 PF13041 PPR_2: PPR repeat fam 99.2 2.4E-11 5.1E-16 83.9 6.5 49 577-625 1-49 (50)
61 COG3071 HemY Uncharacterized e 99.2 1.1E-07 2.5E-12 91.6 33.2 133 508-648 262-395 (400)
62 TIGR02521 type_IV_pilW type IV 99.2 3.6E-09 7.8E-14 102.7 23.2 203 50-255 29-231 (234)
63 KOG3785 Uncharacterized conser 99.2 7.9E-07 1.7E-11 84.0 36.7 448 59-618 29-498 (557)
64 KOG1129 TPR repeat-containing 99.2 1.4E-09 3.1E-14 100.9 17.8 229 126-392 227-458 (478)
65 KOG0547 Translocase of outer m 99.2 3.9E-08 8.4E-13 96.7 28.3 324 58-423 121-490 (606)
66 KOG1173 Anaphase-promoting com 99.2 9.7E-07 2.1E-11 88.9 38.1 271 295-622 246-530 (611)
67 KOG4162 Predicted calmodulin-b 99.1 1.7E-05 3.6E-10 83.3 46.7 314 65-423 240-575 (799)
68 KOG2376 Signal recognition par 99.1 6.6E-06 1.4E-10 83.5 41.2 187 483-675 315-517 (652)
69 PRK12370 invasion protein regu 99.1 2E-08 4.3E-13 109.6 25.3 183 67-254 276-468 (553)
70 TIGR02521 type_IV_pilW type IV 99.1 3E-08 6.5E-13 96.2 24.2 131 121-254 30-162 (234)
71 PRK12370 invasion protein regu 99.1 3.9E-08 8.5E-13 107.3 26.6 244 137-423 276-534 (553)
72 KOG1129 TPR repeat-containing 99.0 1.8E-08 3.9E-13 93.7 17.7 226 58-321 229-457 (478)
73 PF12569 NARP1: NMDA receptor- 99.0 6.9E-06 1.5E-10 86.7 38.9 305 93-423 10-333 (517)
74 KOG2376 Signal recognition par 99.0 1.8E-05 3.8E-10 80.5 37.7 478 54-640 14-517 (652)
75 PF12569 NARP1: NMDA receptor- 99.0 5.8E-07 1.2E-11 94.6 28.3 97 295-392 230-334 (517)
76 KOG3616 Selective LIM binding 99.0 2E-05 4.3E-10 81.7 37.9 400 101-605 746-1181(1636)
77 KOG1173 Anaphase-promoting com 99.0 9.4E-07 2E-11 89.0 27.6 282 121-439 243-532 (611)
78 KOG1840 Kinesin light chain [C 98.9 2.8E-07 6.1E-12 95.7 24.2 241 87-355 199-477 (508)
79 COG3063 PilF Tfp pilus assembl 98.9 3.8E-07 8.2E-12 81.4 21.3 205 48-255 31-235 (250)
80 KOG0985 Vesicle coat protein c 98.9 0.00018 3.9E-09 77.7 45.9 279 55-413 987-1267(1666)
81 KOG3616 Selective LIM binding 98.9 9.6E-05 2.1E-09 76.8 40.9 218 301-567 714-931 (1636)
82 KOG3617 WD40 and TPR repeat-co 98.9 0.00013 2.8E-09 77.0 41.5 248 38-354 716-993 (1416)
83 PRK11189 lipoprotein NlpI; Pro 98.9 6E-07 1.3E-11 89.5 23.9 218 66-323 40-266 (296)
84 KOG1840 Kinesin light chain [C 98.9 1.4E-07 3.1E-12 97.8 19.6 249 4-255 196-478 (508)
85 KOG3617 WD40 and TPR repeat-co 98.8 0.00019 4.2E-09 75.8 40.3 52 629-680 1306-1361(1416)
86 PRK11189 lipoprotein NlpI; Pro 98.8 1.3E-06 2.7E-11 87.2 24.3 39 396-434 237-275 (296)
87 KOG4162 Predicted calmodulin-b 98.8 0.0003 6.4E-09 74.3 46.2 503 99-677 239-782 (799)
88 COG3063 PilF Tfp pilus assembl 98.8 2.1E-06 4.5E-11 76.8 22.2 196 162-390 39-234 (250)
89 KOG1127 TPR repeat-containing 98.8 5.8E-05 1.3E-09 81.4 36.3 185 68-255 474-658 (1238)
90 KOG4340 Uncharacterized conser 98.8 6.4E-06 1.4E-10 76.2 25.0 313 58-390 16-337 (459)
91 cd05804 StaR_like StaR_like; a 98.8 2.4E-05 5.2E-10 81.3 32.2 194 202-423 123-335 (355)
92 KOG1174 Anaphase-promoting com 98.8 4.8E-05 1E-09 73.9 30.4 268 118-423 228-499 (564)
93 KOG1127 TPR repeat-containing 98.7 0.00069 1.5E-08 73.5 40.5 380 8-420 493-909 (1238)
94 cd05804 StaR_like StaR_like; a 98.7 2.8E-05 6.1E-10 80.7 28.9 310 4-356 3-335 (355)
95 PF04733 Coatomer_E: Coatomer 98.6 1.5E-06 3.4E-11 85.1 17.0 252 14-322 8-265 (290)
96 KOG1174 Anaphase-promoting com 98.6 0.00067 1.5E-08 66.2 36.0 290 304-649 207-504 (564)
97 PF12854 PPR_1: PPR repeat 98.6 5.1E-08 1.1E-12 60.1 4.0 32 574-605 2-33 (34)
98 KOG4340 Uncharacterized conser 98.6 0.00031 6.8E-09 65.3 29.2 348 197-606 14-373 (459)
99 PF12854 PPR_1: PPR repeat 98.6 8.9E-08 1.9E-12 59.0 4.1 32 609-640 2-33 (34)
100 KOG0624 dsRNA-activated protei 98.6 6.9E-05 1.5E-09 71.0 24.6 305 57-423 43-369 (504)
101 PRK04841 transcriptional regul 98.5 0.00019 4E-09 84.9 33.8 338 59-423 381-759 (903)
102 KOG1125 TPR repeat-containing 98.5 1.8E-05 3.9E-10 80.4 20.6 222 59-320 292-525 (579)
103 PF04733 Coatomer_E: Coatomer 98.5 8.8E-06 1.9E-10 79.8 18.0 82 307-390 181-263 (290)
104 KOG1070 rRNA processing protei 98.5 3.3E-05 7.2E-10 86.1 23.6 234 22-262 1429-1669(1710)
105 KOG0548 Molecular co-chaperone 98.4 0.0015 3.2E-08 66.4 31.6 235 367-657 228-467 (539)
106 PRK04841 transcriptional regul 98.4 0.001 2.2E-08 78.7 36.5 345 53-423 342-719 (903)
107 KOG1125 TPR repeat-containing 98.4 5.9E-05 1.3E-09 76.8 20.9 222 96-356 294-526 (579)
108 KOG0548 Molecular co-chaperone 98.4 0.0044 9.6E-08 63.1 35.3 106 516-626 365-471 (539)
109 KOG1914 mRNA cleavage and poly 98.4 0.0047 1E-07 62.8 39.9 157 510-668 367-529 (656)
110 KOG1914 mRNA cleavage and poly 98.4 0.0047 1E-07 62.8 41.6 151 525-678 347-501 (656)
111 PLN02789 farnesyltranstransfer 98.3 0.00047 1E-08 68.7 26.0 167 174-375 88-267 (320)
112 TIGR03302 OM_YfiO outer membra 98.3 5.7E-05 1.2E-09 73.0 19.4 189 85-322 31-232 (235)
113 PLN02789 farnesyltranstransfer 98.3 0.00041 8.9E-09 69.1 25.3 205 99-340 49-267 (320)
114 KOG1070 rRNA processing protei 98.3 0.00025 5.4E-09 79.5 25.3 202 89-326 1460-1667(1710)
115 KOG2053 Mitochondrial inherita 98.3 0.0097 2.1E-07 64.4 46.4 528 59-641 16-606 (932)
116 KOG1128 Uncharacterized conser 98.3 3.5E-05 7.6E-10 80.5 16.6 212 59-322 405-616 (777)
117 PRK14720 transcript cleavage f 98.2 0.0003 6.6E-09 78.2 24.4 145 88-255 32-177 (906)
118 KOG1128 Uncharacterized conser 98.2 0.00015 3.2E-09 76.0 20.5 233 155-437 395-631 (777)
119 KOG0624 dsRNA-activated protei 98.2 0.0052 1.1E-07 58.7 34.8 198 198-431 43-258 (504)
120 TIGR03302 OM_YfiO outer membra 98.2 0.00013 2.9E-09 70.5 18.7 184 49-255 30-231 (235)
121 TIGR00756 PPR pentatricopeptid 98.1 5.8E-06 1.2E-10 52.0 4.5 33 511-543 2-34 (35)
122 PRK10370 formate-dependent nit 98.1 0.00043 9.3E-09 64.1 18.8 157 59-231 23-182 (198)
123 COG5010 TadD Flp pilus assembl 98.1 0.00025 5.5E-09 65.3 16.6 127 126-255 70-196 (257)
124 PRK14720 transcript cleavage f 98.0 0.0017 3.6E-08 72.5 24.8 240 45-339 25-268 (906)
125 COG5010 TadD Flp pilus assembl 98.0 0.00047 1E-08 63.6 17.1 160 162-355 70-229 (257)
126 TIGR00756 PPR pentatricopeptid 98.0 7.6E-06 1.7E-10 51.4 4.1 34 160-193 2-35 (35)
127 PRK10370 formate-dependent nit 98.0 0.00095 2.1E-08 61.8 19.3 119 171-322 52-173 (198)
128 KOG3060 Uncharacterized conser 98.0 0.0017 3.8E-08 59.4 19.9 157 101-262 26-187 (289)
129 PRK15179 Vi polysaccharide bio 98.0 0.0011 2.3E-08 73.3 22.8 133 118-255 82-216 (694)
130 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 50.2 4.3 33 510-542 2-34 (34)
131 PRK15179 Vi polysaccharide bio 98.0 0.0014 3.1E-08 72.3 23.0 220 120-393 26-246 (694)
132 PRK15359 type III secretion sy 98.0 0.00026 5.7E-09 61.8 13.8 100 128-230 30-129 (144)
133 COG4783 Putative Zn-dependent 98.0 0.0064 1.4E-07 61.4 24.7 118 294-429 341-459 (484)
134 PRK15359 type III secretion sy 97.9 0.00011 2.3E-09 64.2 11.0 105 40-150 16-120 (144)
135 KOG2053 Mitochondrial inherita 97.9 0.06 1.3E-06 58.6 50.3 94 547-642 439-535 (932)
136 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 4E-10 49.2 4.0 33 159-191 2-34 (34)
137 COG4783 Putative Zn-dependent 97.9 0.016 3.4E-07 58.7 26.3 147 195-393 309-455 (484)
138 TIGR02552 LcrH_SycD type III s 97.8 0.00045 9.7E-09 60.0 12.8 96 89-187 19-114 (135)
139 KOG3081 Vesicle coat complex C 97.8 0.017 3.6E-07 53.6 22.0 185 58-256 47-236 (299)
140 KOG3081 Vesicle coat complex C 97.8 0.0067 1.4E-07 56.2 19.5 169 465-641 96-269 (299)
141 KOG3060 Uncharacterized conser 97.8 0.0075 1.6E-07 55.4 19.6 187 65-255 25-219 (289)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00081 1.7E-08 68.4 14.9 124 162-321 173-296 (395)
143 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.4E-10 46.3 3.4 31 510-540 1-31 (31)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00099 2.1E-08 67.8 14.7 127 123-255 170-296 (395)
145 PF10037 MRP-S27: Mitochondria 97.7 0.0007 1.5E-08 69.1 13.6 126 222-376 61-186 (429)
146 PF09976 TPR_21: Tetratricopep 97.7 0.0018 3.9E-08 56.8 14.4 127 124-252 14-143 (145)
147 PF08579 RPM2: Mitochondrial r 97.7 0.0011 2.4E-08 52.5 11.2 75 551-625 32-115 (120)
148 TIGR02552 LcrH_SycD type III s 97.6 0.0017 3.6E-08 56.3 13.9 94 161-255 20-113 (135)
149 PF10037 MRP-S27: Mitochondria 97.6 0.00088 1.9E-08 68.4 13.4 119 509-627 66-186 (429)
150 PF01535 PPR: PPR repeat; Int 97.6 7.2E-05 1.6E-09 45.3 3.5 29 160-188 2-30 (31)
151 PF04840 Vps16_C: Vps16, C-ter 97.6 0.09 1.9E-06 52.5 26.5 109 511-639 179-287 (319)
152 PF08579 RPM2: Mitochondrial r 97.6 0.00091 2E-08 53.0 9.8 82 511-592 27-117 (120)
153 PF09976 TPR_21: Tetratricopep 97.6 0.0038 8.3E-08 54.7 15.0 123 547-673 15-142 (145)
154 PF14938 SNAP: Soluble NSF att 97.6 0.0047 1E-07 61.2 17.3 119 200-358 101-226 (282)
155 KOG2041 WD40 repeat protein [G 97.6 0.1 2.2E-06 55.0 26.6 107 295-421 798-904 (1189)
156 PF05843 Suf: Suppressor of fo 97.5 0.0015 3.3E-08 64.3 12.8 131 123-255 2-135 (280)
157 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0045 9.8E-08 52.1 13.3 100 127-226 7-109 (119)
158 PF05843 Suf: Suppressor of fo 97.4 0.0035 7.5E-08 61.8 13.4 144 53-201 2-148 (280)
159 PF04840 Vps16_C: Vps16, C-ter 97.1 0.29 6.3E-06 48.9 24.2 107 546-672 179-285 (319)
160 PF12895 Apc3: Anaphase-promot 97.1 0.00091 2E-08 52.1 5.3 80 592-674 2-83 (84)
161 cd00189 TPR Tetratricopeptide 97.1 0.0059 1.3E-07 48.6 10.5 91 125-218 3-93 (100)
162 KOG2041 WD40 repeat protein [G 97.1 0.32 7E-06 51.5 24.4 314 325-656 689-1064(1189)
163 KOG2280 Vacuolar assembly/sort 97.1 0.57 1.2E-05 50.4 28.3 157 61-220 398-573 (829)
164 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.011 2.4E-07 49.7 12.1 98 90-187 5-105 (119)
165 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.4 8.6E-06 48.2 34.4 129 545-677 398-530 (660)
166 PF06239 ECSIT: Evolutionarily 97.1 0.014 3E-07 52.8 12.5 105 541-664 44-153 (228)
167 PRK15363 pathogenicity island 97.1 0.031 6.6E-07 48.2 14.1 88 167-255 44-131 (157)
168 KOG2280 Vacuolar assembly/sort 97.0 0.67 1.5E-05 49.9 30.9 329 295-672 439-793 (829)
169 cd00189 TPR Tetratricopeptide 97.0 0.008 1.7E-07 47.8 10.3 93 161-254 3-95 (100)
170 PF14938 SNAP: Soluble NSF att 97.0 0.026 5.6E-07 56.0 15.7 206 48-255 31-265 (282)
171 PRK15363 pathogenicity island 97.0 0.021 4.6E-07 49.2 12.7 95 55-151 38-132 (157)
172 PRK02603 photosystem I assembl 97.0 0.026 5.6E-07 51.2 14.3 91 122-213 35-126 (172)
173 PF06239 ECSIT: Evolutionarily 96.9 0.011 2.3E-07 53.5 10.7 106 505-629 43-153 (228)
174 PRK10866 outer membrane biogen 96.9 0.19 4.2E-06 48.2 20.0 175 58-254 38-239 (243)
175 PF12895 Apc3: Anaphase-promot 96.9 0.0024 5.3E-08 49.7 5.9 80 135-217 2-82 (84)
176 KOG1538 Uncharacterized conser 96.9 0.18 3.9E-06 52.8 20.3 61 362-429 746-806 (1081)
177 CHL00033 ycf3 photosystem I as 96.9 0.022 4.7E-07 51.5 12.9 85 103-187 15-101 (168)
178 COG4700 Uncharacterized protei 96.9 0.15 3.3E-06 44.7 16.6 103 85-187 87-189 (251)
179 PRK02603 photosystem I assembl 96.9 0.044 9.4E-07 49.7 14.7 89 510-599 36-126 (172)
180 PF13525 YfiO: Outer membrane 96.8 0.087 1.9E-06 49.2 16.8 178 49-246 2-197 (203)
181 PLN03088 SGT1, suppressor of 96.8 0.013 2.8E-07 60.0 12.3 90 59-150 9-98 (356)
182 CHL00033 ycf3 photosystem I as 96.8 0.03 6.5E-07 50.6 13.1 92 546-638 37-137 (168)
183 PLN03088 SGT1, suppressor of 96.8 0.024 5.3E-07 58.1 13.8 103 94-201 9-111 (356)
184 KOG0553 TPR repeat-containing 96.8 0.067 1.5E-06 50.9 15.0 102 203-338 91-192 (304)
185 KOG2796 Uncharacterized conser 96.7 0.15 3.2E-06 47.4 16.0 142 294-436 178-326 (366)
186 PF13432 TPR_16: Tetratricopep 96.7 0.0091 2E-07 43.7 7.1 59 201-261 5-63 (65)
187 KOG0553 TPR repeat-containing 96.6 0.023 5E-07 53.9 11.0 86 61-148 90-175 (304)
188 PRK10153 DNA-binding transcrip 96.6 0.14 2.9E-06 55.2 18.3 142 505-652 333-489 (517)
189 PF12688 TPR_5: Tetratrico pep 96.6 0.071 1.5E-06 44.3 12.7 93 93-185 7-102 (120)
190 PF07079 DUF1347: Protein of u 96.6 0.98 2.1E-05 45.7 40.0 80 595-676 437-522 (549)
191 PRK10866 outer membrane biogen 96.5 0.39 8.3E-06 46.2 19.1 186 86-320 31-239 (243)
192 COG3898 Uncharacterized membra 96.5 0.98 2.1E-05 44.7 25.3 286 62-393 94-393 (531)
193 PF12688 TPR_5: Tetratrico pep 96.5 0.13 2.8E-06 42.8 13.4 89 516-606 8-102 (120)
194 PF07079 DUF1347: Protein of u 96.5 1.2 2.5E-05 45.3 38.0 198 509-715 298-523 (549)
195 PF14559 TPR_19: Tetratricopep 96.4 0.011 2.4E-07 43.7 6.3 61 591-654 3-63 (68)
196 KOG2796 Uncharacterized conser 96.4 0.18 3.9E-06 46.8 14.9 121 65-187 190-315 (366)
197 PRK10153 DNA-binding transcrip 96.4 0.28 6E-06 52.8 19.0 136 84-222 334-482 (517)
198 PF13414 TPR_11: TPR repeat; P 96.4 0.018 3.9E-07 42.7 7.2 63 193-255 3-66 (69)
199 COG4700 Uncharacterized protei 96.4 0.65 1.4E-05 40.9 18.2 134 540-677 85-221 (251)
200 KOG2114 Vacuolar assembly/sort 96.2 2.6 5.5E-05 46.3 24.2 151 89-252 336-488 (933)
201 KOG0550 Molecular chaperone (D 96.2 1.6 3.4E-05 43.8 21.0 53 203-255 179-231 (486)
202 PF12921 ATP13: Mitochondrial 96.2 0.06 1.3E-06 45.2 10.0 82 122-203 2-98 (126)
203 PF14559 TPR_19: Tetratricopep 96.2 0.015 3.3E-07 42.9 5.9 51 205-255 3-53 (68)
204 PF03704 BTAD: Bacterial trans 96.2 0.17 3.7E-06 44.3 13.5 71 124-196 64-139 (146)
205 PF08631 SPO22: Meiosis protei 96.1 1.6 3.4E-05 43.2 24.6 61 195-255 86-149 (278)
206 KOG1538 Uncharacterized conser 96.1 0.56 1.2E-05 49.3 18.1 259 326-643 554-846 (1081)
207 PF13432 TPR_16: Tetratricopep 96.1 0.019 4.2E-07 41.9 5.9 52 132-185 7-58 (65)
208 KOG1130 Predicted G-alpha GTPa 96.1 0.14 3E-06 50.6 13.0 287 59-387 24-339 (639)
209 PF13525 YfiO: Outer membrane 96.0 0.78 1.7E-05 42.8 17.8 180 92-313 10-198 (203)
210 KOG1130 Predicted G-alpha GTPa 96.0 0.043 9.3E-07 54.1 9.2 137 195-357 197-344 (639)
211 KOG0550 Molecular chaperone (D 95.9 1.5 3.3E-05 43.9 19.3 263 10-322 52-350 (486)
212 PRK10803 tol-pal system protei 95.8 0.15 3.2E-06 49.4 12.3 101 123-226 144-250 (263)
213 PF13414 TPR_11: TPR repeat; P 95.8 0.045 9.7E-07 40.5 6.9 61 580-641 4-65 (69)
214 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.6 5.6E-05 42.7 34.8 148 508-661 396-547 (660)
215 PRK10803 tol-pal system protei 95.8 0.14 3.1E-06 49.5 12.0 99 195-322 145-246 (263)
216 PF12921 ATP13: Mitochondrial 95.7 0.089 1.9E-06 44.2 9.0 52 118-169 48-99 (126)
217 PF13371 TPR_9: Tetratricopept 95.6 0.042 9.1E-07 41.2 6.1 52 97-149 5-56 (73)
218 PF13281 DUF4071: Domain of un 95.6 0.94 2E-05 45.8 16.9 76 57-132 146-227 (374)
219 COG4235 Cytochrome c biogenesi 95.5 0.87 1.9E-05 43.8 15.6 33 223-255 152-184 (287)
220 PF03704 BTAD: Bacterial trans 95.4 0.097 2.1E-06 45.9 8.8 69 582-651 65-138 (146)
221 COG4235 Cytochrome c biogenesi 95.3 0.88 1.9E-05 43.8 15.1 101 155-256 153-256 (287)
222 KOG3941 Intermediate in Toll s 95.3 0.13 2.9E-06 48.1 9.3 90 506-595 64-174 (406)
223 PF13281 DUF4071: Domain of un 95.3 3.5 7.5E-05 41.9 19.9 170 124-322 143-334 (374)
224 PF13371 TPR_9: Tetratricopept 95.0 0.085 1.8E-06 39.5 6.3 55 201-255 3-57 (73)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.41 8.8E-06 49.1 12.7 63 121-186 74-140 (453)
226 PF09205 DUF1955: Domain of un 94.8 1.9 4.2E-05 35.7 14.3 138 100-259 15-152 (161)
227 KOG1585 Protein required for f 94.8 1.6 3.4E-05 40.5 14.3 55 295-350 192-249 (308)
228 PF13170 DUF4003: Protein of u 94.7 3.8 8.2E-05 40.6 18.2 148 525-675 78-243 (297)
229 COG4105 ComL DNA uptake lipopr 94.7 3.8 8.2E-05 38.7 16.9 173 58-254 40-231 (254)
230 PF10300 DUF3808: Protein of u 94.7 1.4 3.1E-05 47.1 16.4 92 162-254 192-294 (468)
231 PF13424 TPR_12: Tetratricopep 94.5 0.22 4.7E-06 37.9 7.5 68 228-321 6-74 (78)
232 COG4105 ComL DNA uptake lipopr 94.5 4.4 9.4E-05 38.3 19.8 67 90-157 38-106 (254)
233 COG3898 Uncharacterized membra 94.4 6 0.00013 39.5 29.4 313 66-428 67-397 (531)
234 PF10300 DUF3808: Protein of u 94.1 2.5 5.5E-05 45.2 16.9 164 89-255 190-375 (468)
235 PF13424 TPR_12: Tetratricopep 94.1 0.048 1E-06 41.6 3.0 73 4-80 2-74 (78)
236 COG3118 Thioredoxin domain-con 93.9 2.4 5.1E-05 40.8 14.2 121 61-185 143-263 (304)
237 COG4785 NlpI Lipoprotein NlpI, 93.9 3.6 7.9E-05 37.4 14.3 159 87-256 99-266 (297)
238 PF13512 TPR_18: Tetratricopep 93.8 0.63 1.4E-05 39.6 9.3 86 48-134 6-94 (142)
239 KOG2610 Uncharacterized conser 93.8 4 8.6E-05 39.8 15.4 150 522-674 116-272 (491)
240 PRK15331 chaperone protein Sic 93.8 0.44 9.6E-06 41.5 8.4 92 57-150 42-133 (165)
241 PRK15331 chaperone protein Sic 93.7 1.7 3.6E-05 38.0 11.7 86 132-220 47-132 (165)
242 KOG3941 Intermediate in Toll s 93.6 0.56 1.2E-05 44.2 9.3 89 541-629 64-173 (406)
243 PF13170 DUF4003: Protein of u 93.6 8.4 0.00018 38.2 20.3 130 174-335 78-224 (297)
244 smart00299 CLH Clathrin heavy 93.6 4.1 8.9E-05 35.2 14.6 44 126-171 11-54 (140)
245 PF13512 TPR_18: Tetratricopep 93.5 2 4.4E-05 36.5 11.8 70 99-169 22-93 (142)
246 PLN03098 LPA1 LOW PSII ACCUMUL 93.5 2.3 4.9E-05 43.9 14.1 27 160-186 77-103 (453)
247 KOG4555 TPR repeat-containing 93.3 2.2 4.9E-05 35.2 11.1 97 53-150 44-143 (175)
248 COG1747 Uncharacterized N-term 93.3 10 0.00022 39.4 18.1 175 55-238 69-250 (711)
249 smart00299 CLH Clathrin heavy 93.2 5.1 0.00011 34.6 15.5 44 513-557 11-54 (140)
250 PF04053 Coatomer_WDAD: Coatom 93.0 4.9 0.00011 42.4 16.5 105 124-255 297-401 (443)
251 KOG0543 FKBP-type peptidyl-pro 93.0 0.64 1.4E-05 46.5 9.3 95 89-186 259-354 (397)
252 KOG2114 Vacuolar assembly/sort 93.0 18 0.00039 40.2 27.6 72 585-664 711-786 (933)
253 KOG1920 IkappaB kinase complex 92.8 23 0.0005 41.1 24.6 128 377-537 894-1027(1265)
254 KOG1941 Acetylcholine receptor 92.8 5.2 0.00011 39.5 14.5 133 229-388 124-271 (518)
255 COG1729 Uncharacterized protei 92.7 1.9 4E-05 41.0 11.5 107 122-231 142-253 (262)
256 PF04053 Coatomer_WDAD: Coatom 92.6 2.3 5E-05 44.8 13.3 156 131-353 270-427 (443)
257 PF07035 Mic1: Colon cancer-as 92.5 7.2 0.00016 34.5 16.1 137 564-719 14-152 (167)
258 COG3118 Thioredoxin domain-con 92.4 2.4 5.1E-05 40.8 11.7 144 17-173 144-287 (304)
259 COG1729 Uncharacterized protei 92.1 1.8 4E-05 41.1 10.6 98 89-187 144-244 (262)
260 PF09205 DUF1955: Domain of un 91.9 6.7 0.00014 32.7 13.9 63 618-681 90-152 (161)
261 PF07035 Mic1: Colon cancer-as 91.8 8.7 0.00019 34.0 15.4 60 295-358 91-150 (167)
262 KOG0543 FKBP-type peptidyl-pro 91.8 7.6 0.00016 39.2 14.9 94 294-389 258-352 (397)
263 KOG4555 TPR repeat-containing 91.4 4.7 0.0001 33.4 10.6 87 588-675 52-141 (175)
264 KOG1550 Extracellular protein 90.8 26 0.00056 38.6 19.6 186 138-360 228-429 (552)
265 KOG1585 Protein required for f 90.8 14 0.00031 34.5 15.2 86 123-219 32-117 (308)
266 PF08631 SPO22: Meiosis protei 90.2 20 0.00044 35.3 24.0 162 63-227 4-192 (278)
267 KOG1941 Acetylcholine receptor 90.0 12 0.00027 37.0 14.0 130 294-423 84-234 (518)
268 COG3629 DnrI DNA-binding trans 89.8 4 8.7E-05 39.5 10.8 79 579-658 153-236 (280)
269 PF10345 Cohesin_load: Cohesin 89.8 38 0.00083 37.9 39.4 40 280-319 288-327 (608)
270 PF13428 TPR_14: Tetratricopep 89.5 1.5 3.2E-05 28.7 5.5 26 582-607 4-29 (44)
271 PF13428 TPR_14: Tetratricopep 89.3 1 2.2E-05 29.5 4.6 27 161-187 4-30 (44)
272 COG0457 NrfG FOG: TPR repeat [ 89.1 20 0.00043 33.7 24.6 224 65-322 36-265 (291)
273 PRK11906 transcriptional regul 89.0 18 0.0004 37.6 15.3 128 162-321 257-400 (458)
274 KOG4570 Uncharacterized conser 88.8 4.1 9E-05 39.3 9.8 104 117-222 59-164 (418)
275 PF04184 ST7: ST7 protein; In 88.6 24 0.00053 36.9 15.7 73 364-436 260-338 (539)
276 KOG2610 Uncharacterized conser 88.4 12 0.00027 36.6 12.7 119 132-253 113-235 (491)
277 COG3629 DnrI DNA-binding trans 88.3 3.8 8.3E-05 39.7 9.5 76 124-201 155-235 (280)
278 PRK11906 transcriptional regul 88.1 31 0.00066 36.0 16.2 137 123-262 252-405 (458)
279 PF10602 RPN7: 26S proteasome 88.1 6.8 0.00015 35.4 10.7 94 580-673 37-137 (177)
280 COG4649 Uncharacterized protei 87.5 20 0.00043 31.7 13.6 48 101-148 72-120 (221)
281 KOG4570 Uncharacterized conser 87.4 7.2 0.00016 37.8 10.4 51 629-679 115-165 (418)
282 PF13176 TPR_7: Tetratricopept 87.4 1.2 2.6E-05 27.6 3.8 27 229-255 1-27 (36)
283 PF00637 Clathrin: Region in C 86.9 0.046 9.9E-07 47.8 -4.0 83 59-148 14-96 (143)
284 KOG1920 IkappaB kinase complex 86.5 74 0.0016 37.3 30.4 152 491-674 894-1051(1265)
285 PF13431 TPR_17: Tetratricopep 86.5 0.71 1.5E-05 28.2 2.4 32 216-247 2-33 (34)
286 PF13176 TPR_7: Tetratricopept 86.2 1.9 4.1E-05 26.7 4.2 23 617-639 2-24 (36)
287 PF04184 ST7: ST7 protein; In 86.1 39 0.00086 35.4 15.5 63 580-642 260-323 (539)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 85.6 6.1 0.00013 30.8 7.3 40 602-641 30-69 (103)
289 PF13431 TPR_17: Tetratricopep 85.5 0.99 2.1E-05 27.6 2.6 24 119-142 10-33 (34)
290 PF04097 Nic96: Nup93/Nic96; 84.9 51 0.0011 36.9 17.4 88 516-608 265-356 (613)
291 KOG1586 Protein required for f 84.9 34 0.00073 32.0 17.2 21 303-323 164-184 (288)
292 PF10602 RPN7: 26S proteasome 84.7 8.6 0.00019 34.8 9.4 64 229-321 38-101 (177)
293 PF09613 HrpB1_HrpK: Bacterial 84.6 27 0.00058 30.6 12.4 16 133-148 55-70 (160)
294 PF02284 COX5A: Cytochrome c o 84.4 6.2 0.00014 31.1 7.0 47 105-151 28-74 (108)
295 COG4649 Uncharacterized protei 84.3 29 0.00062 30.7 14.5 139 511-650 61-203 (221)
296 COG0457 NrfG FOG: TPR repeat [ 84.2 36 0.00079 31.8 27.1 96 159-254 60-157 (291)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 83.6 8.4 0.00018 30.1 7.3 49 173-221 22-70 (103)
298 PF02284 COX5A: Cytochrome c o 82.7 8.1 0.00018 30.5 7.0 46 176-221 28-73 (108)
299 PF11207 DUF2989: Protein of u 82.7 16 0.00034 33.4 9.9 80 97-178 117-198 (203)
300 PF13929 mRNA_stabil: mRNA sta 82.4 34 0.00073 33.3 12.5 126 90-218 134-263 (292)
301 KOG0276 Vesicle coat complex C 81.3 35 0.00075 36.6 13.0 99 134-253 649-747 (794)
302 KOG2066 Vacuolar assembly/sort 81.1 98 0.0021 34.5 25.6 23 401-423 511-533 (846)
303 KOG1550 Extracellular protein 81.1 82 0.0018 34.8 17.1 153 520-679 260-427 (552)
304 PF00515 TPR_1: Tetratricopept 80.9 4.5 9.7E-05 24.4 4.4 28 228-255 2-29 (34)
305 PF11207 DUF2989: Protein of u 80.0 26 0.00057 32.0 10.4 79 589-669 117-198 (203)
306 KOG0276 Vesicle coat complex C 78.2 30 0.00065 37.0 11.5 38 135-180 599-636 (794)
307 COG4455 ImpE Protein of avirul 78.0 13 0.00028 34.1 7.8 52 203-254 11-62 (273)
308 PF07719 TPR_2: Tetratricopept 77.8 6.3 0.00014 23.6 4.4 27 229-255 3-29 (34)
309 KOG0686 COP9 signalosome, subu 77.7 48 0.001 33.7 12.2 169 6-187 149-333 (466)
310 PF13934 ELYS: Nuclear pore co 76.5 31 0.00067 32.7 10.5 26 2-27 21-46 (226)
311 PF09613 HrpB1_HrpK: Bacterial 76.4 53 0.0011 28.8 13.3 75 298-376 15-90 (160)
312 PF00515 TPR_1: Tetratricopept 75.4 8.1 0.00018 23.2 4.4 25 582-606 4-28 (34)
313 KOG2063 Vacuolar assembly/sort 75.4 1.6E+02 0.0035 34.0 19.3 60 10-81 310-375 (877)
314 PF04097 Nic96: Nup93/Nic96; 75.3 1.5E+02 0.0032 33.3 25.4 42 164-206 117-158 (613)
315 PF13374 TPR_10: Tetratricopep 75.1 7.5 0.00016 24.6 4.4 26 581-606 4-29 (42)
316 PHA02875 ankyrin repeat protei 73.3 63 0.0014 34.1 13.4 7 304-310 143-149 (413)
317 PRK15180 Vi polysaccharide bio 73.3 27 0.00059 36.1 9.5 121 205-358 301-421 (831)
318 COG4785 NlpI Lipoprotein NlpI, 72.7 81 0.0018 29.2 14.8 165 121-322 98-266 (297)
319 PF00637 Clathrin: Region in C 72.6 2.5 5.5E-05 36.7 2.2 88 91-186 11-98 (143)
320 PF13374 TPR_10: Tetratricopep 72.6 10 0.00022 24.0 4.6 28 615-642 3-30 (42)
321 PF06552 TOM20_plant: Plant sp 72.5 57 0.0012 29.2 10.2 44 309-360 96-139 (186)
322 COG3947 Response regulator con 72.2 1E+02 0.0022 30.1 15.3 148 105-255 151-341 (361)
323 PF07719 TPR_2: Tetratricopept 71.4 11 0.00025 22.4 4.4 19 622-640 9-27 (34)
324 PF07163 Pex26: Pex26 protein; 71.0 52 0.0011 31.7 10.1 87 551-637 90-181 (309)
325 PF02259 FAT: FAT domain; Int 70.4 1.3E+02 0.0029 30.7 22.2 27 229-255 148-174 (352)
326 PF07721 TPR_4: Tetratricopept 68.8 7.1 0.00015 21.9 2.7 20 127-146 6-25 (26)
327 KOG4234 TPR repeat-containing 68.0 18 0.00039 32.7 6.2 91 59-151 102-197 (271)
328 COG4455 ImpE Protein of avirul 68.0 34 0.00073 31.6 8.0 56 127-184 6-61 (273)
329 PF13181 TPR_8: Tetratricopept 67.2 13 0.00027 22.3 3.9 27 229-255 3-29 (34)
330 TIGR02508 type_III_yscG type I 66.8 63 0.0014 25.6 8.1 51 553-609 48-98 (115)
331 PHA02875 ankyrin repeat protei 66.8 1.7E+02 0.0038 30.8 15.5 145 59-217 6-156 (413)
332 COG2909 MalT ATP-dependent tra 66.8 2.4E+02 0.0052 32.3 24.3 88 100-187 428-526 (894)
333 PRK09687 putative lyase; Provi 66.6 1.4E+02 0.003 29.5 26.6 115 514-642 147-262 (280)
334 PF13929 mRNA_stabil: mRNA sta 65.1 1.4E+02 0.0031 29.1 16.7 115 524-638 143-262 (292)
335 COG5159 RPN6 26S proteasome re 65.1 1.4E+02 0.003 29.0 18.3 164 165-354 10-191 (421)
336 KOG0991 Replication factor C, 64.8 1.3E+02 0.0027 28.4 12.4 94 97-193 169-273 (333)
337 COG1747 Uncharacterized N-term 64.3 2E+02 0.0044 30.5 20.3 168 159-358 67-235 (711)
338 PF13174 TPR_6: Tetratricopept 62.9 8.9 0.00019 22.7 2.6 26 57-82 5-30 (33)
339 KOG0890 Protein kinase of the 62.7 4.5E+02 0.0098 34.1 30.9 99 296-401 1452-1552(2382)
340 KOG2297 Predicted translation 61.5 1.7E+02 0.0036 28.7 14.0 208 154-422 107-348 (412)
341 TIGR03504 FimV_Cterm FimV C-te 61.5 18 0.0004 23.6 3.9 21 94-114 6-26 (44)
342 PF13181 TPR_8: Tetratricopept 60.8 25 0.00054 20.9 4.4 26 581-606 3-28 (34)
343 cd00280 TRFH Telomeric Repeat 60.1 1.3E+02 0.0029 27.1 9.9 35 164-201 117-151 (200)
344 PF07163 Pex26: Pex26 protein; 59.8 78 0.0017 30.6 9.1 57 59-115 90-146 (309)
345 PF02259 FAT: FAT domain; Int 59.8 2.1E+02 0.0045 29.2 22.4 67 191-257 144-214 (352)
346 KOG0403 Neoplastic transformat 59.7 2.2E+02 0.0048 29.6 18.4 332 37-407 199-586 (645)
347 PF07575 Nucleopor_Nup85: Nup8 59.2 2.9E+02 0.0063 30.7 16.0 367 4-439 144-540 (566)
348 KOG4077 Cytochrome c oxidase, 58.9 66 0.0014 26.8 7.3 40 603-642 73-112 (149)
349 KOG1258 mRNA processing protei 58.9 2.7E+02 0.0058 30.3 31.9 127 294-423 46-179 (577)
350 KOG4648 Uncharacterized conser 58.6 32 0.00069 33.9 6.5 52 129-183 104-156 (536)
351 PF13762 MNE1: Mitochondrial s 58.5 1.2E+02 0.0027 26.2 10.8 83 124-206 41-128 (145)
352 KOG2062 26S proteasome regulat 58.4 3.1E+02 0.0067 30.8 34.3 87 624-715 511-599 (929)
353 KOG4234 TPR repeat-containing 58.3 60 0.0013 29.6 7.6 106 67-188 87-198 (271)
354 TIGR03504 FimV_Cterm FimV C-te 58.2 20 0.00044 23.5 3.6 22 128-149 5-26 (44)
355 KOG4648 Uncharacterized conser 57.6 35 0.00076 33.7 6.6 44 203-246 107-150 (536)
356 PF04190 DUF410: Protein of un 57.6 1.9E+02 0.0041 28.1 14.8 189 18-252 1-216 (260)
357 KOG1258 mRNA processing protei 57.3 2.9E+02 0.0062 30.1 39.1 181 476-663 296-489 (577)
358 PF10579 Rapsyn_N: Rapsyn N-te 56.8 33 0.00072 25.8 4.9 51 93-144 13-65 (80)
359 PRK11619 lytic murein transgly 56.5 3.4E+02 0.0073 30.7 33.6 209 171-415 254-496 (644)
360 TIGR02561 HrpB1_HrpK type III 56.5 1.3E+02 0.0029 26.0 12.3 52 134-187 22-73 (153)
361 PF10579 Rapsyn_N: Rapsyn N-te 56.1 25 0.00055 26.4 4.2 47 134-180 18-65 (80)
362 cd08819 CARD_MDA5_2 Caspase ac 56.1 82 0.0018 24.3 7.0 64 348-414 22-85 (88)
363 KOG4077 Cytochrome c oxidase, 56.1 72 0.0016 26.5 7.1 48 176-223 67-114 (149)
364 KOG2659 LisH motif-containing 55.9 1.1E+02 0.0024 28.6 9.2 54 620-673 70-127 (228)
365 COG3947 Response regulator con 55.9 35 0.00076 33.0 6.2 69 124-194 281-354 (361)
366 COG2976 Uncharacterized protei 55.7 1.7E+02 0.0036 26.8 11.8 125 294-423 55-187 (207)
367 KOG2034 Vacuolar sorting prote 55.6 3.7E+02 0.008 30.9 25.8 80 562-643 611-696 (911)
368 TIGR02508 type_III_yscG type I 53.4 1.1E+02 0.0025 24.3 8.1 86 102-196 20-105 (115)
369 COG2976 Uncharacterized protei 51.4 2E+02 0.0042 26.4 14.0 20 302-321 168-187 (207)
370 PF11848 DUF3368: Domain of un 50.8 61 0.0013 21.7 5.2 30 626-655 14-43 (48)
371 PRK15180 Vi polysaccharide bio 49.8 3.3E+02 0.0072 28.6 33.1 119 171-323 302-421 (831)
372 PF11846 DUF3366: Domain of un 49.5 70 0.0015 29.4 7.3 32 155-186 141-172 (193)
373 PF08424 NRDE-2: NRDE-2, neces 49.4 2.6E+02 0.0056 28.3 11.9 78 69-148 48-128 (321)
374 PF13762 MNE1: Mitochondrial s 48.6 1.8E+02 0.0039 25.2 12.2 49 543-591 78-127 (145)
375 KOG1464 COP9 signalosome, subu 48.6 2.6E+02 0.0055 26.9 16.5 165 239-431 39-229 (440)
376 PF04762 IKI3: IKI3 family; I 47.9 5.5E+02 0.012 30.6 16.2 135 7-151 694-843 (928)
377 KOG2908 26S proteasome regulat 47.8 2.3E+02 0.0049 28.4 10.3 75 550-624 81-166 (380)
378 COG0735 Fur Fe2+/Zn2+ uptake r 47.7 98 0.0021 26.9 7.4 65 601-666 8-72 (145)
379 PF11848 DUF3368: Domain of un 47.6 76 0.0016 21.2 5.2 31 591-621 14-44 (48)
380 COG2909 MalT ATP-dependent tra 45.1 5.4E+02 0.012 29.7 27.1 318 69-420 298-684 (894)
381 PRK09687 putative lyase; Provi 45.0 3.2E+02 0.0069 27.0 25.6 13 124-136 39-51 (280)
382 KOG2168 Cullins [Cell cycle co 45.0 5.3E+02 0.012 29.6 18.3 287 368-675 330-661 (835)
383 PF11838 ERAP1_C: ERAP1-like C 44.7 3.4E+02 0.0074 27.3 14.6 146 104-254 147-302 (324)
384 PF10366 Vps39_1: Vacuolar sor 44.1 1.8E+02 0.0038 23.8 8.8 27 295-321 41-67 (108)
385 PF11846 DUF3366: Domain of un 43.2 1.1E+02 0.0025 28.0 7.7 31 611-641 141-171 (193)
386 PF14689 SPOB_a: Sensor_kinase 43.1 43 0.00093 23.9 3.7 45 631-677 7-51 (62)
387 KOG2422 Uncharacterized conser 43.1 4.7E+02 0.01 28.4 17.6 159 205-378 250-431 (665)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 42.7 1.7E+02 0.0037 24.6 7.9 56 90-147 68-124 (126)
389 KOG4507 Uncharacterized conser 42.6 2.5E+02 0.0054 30.4 10.3 139 120-262 569-709 (886)
390 PF11663 Toxin_YhaV: Toxin wit 42.5 27 0.00059 29.4 2.9 26 595-622 111-136 (140)
391 KOG0890 Protein kinase of the 42.5 9.2E+02 0.02 31.6 34.2 327 59-428 1390-1735(2382)
392 PF13934 ELYS: Nuclear pore co 42.4 3E+02 0.0066 26.0 10.8 94 489-590 90-183 (226)
393 COG5108 RPO41 Mitochondrial DN 42.4 1.1E+02 0.0024 33.4 7.9 57 295-354 67-129 (1117)
394 PF14853 Fis1_TPR_C: Fis1 C-te 41.6 1E+02 0.0022 21.2 5.1 28 622-651 9-36 (53)
395 PF11838 ERAP1_C: ERAP1-like C 41.1 3.9E+02 0.0084 26.9 18.6 110 560-674 146-262 (324)
396 smart00386 HAT HAT (Half-A-TPR 40.5 53 0.0012 18.9 3.5 28 208-235 2-29 (33)
397 smart00028 TPR Tetratricopepti 40.2 59 0.0013 18.0 3.8 23 583-605 5-27 (34)
398 PF14669 Asp_Glu_race_2: Putat 40.0 2.9E+02 0.0064 25.2 15.8 25 333-357 137-161 (233)
399 KOG0687 26S proteasome regulat 38.5 4.2E+02 0.0091 26.5 13.5 19 550-568 110-128 (393)
400 cd00280 TRFH Telomeric Repeat 38.0 1.9E+02 0.0041 26.1 7.4 48 174-221 85-139 (200)
401 PF06552 TOM20_plant: Plant sp 37.9 3.1E+02 0.0067 24.8 10.2 24 294-323 114-137 (186)
402 PF14853 Fis1_TPR_C: Fis1 C-te 37.7 1.4E+02 0.0029 20.6 6.2 34 401-435 7-40 (53)
403 PRK10564 maltose regulon perip 37.7 60 0.0013 31.8 4.9 44 507-550 254-298 (303)
404 KOG2422 Uncharacterized conser 36.8 3.4E+02 0.0074 29.4 10.3 142 7-149 284-446 (665)
405 KOG2034 Vacuolar sorting prote 36.6 7.2E+02 0.016 28.7 25.2 177 11-219 362-556 (911)
406 KOG2908 26S proteasome regulat 36.2 3.1E+02 0.0068 27.5 9.3 69 513-581 79-157 (380)
407 TIGR02561 HrpB1_HrpK type III 35.9 3E+02 0.0064 24.0 13.7 103 301-423 18-121 (153)
408 COG0735 Fur Fe2+/Zn2+ uptake r 35.6 1.2E+02 0.0027 26.3 6.2 33 298-330 25-57 (145)
409 PRK14956 DNA polymerase III su 35.5 6E+02 0.013 27.4 13.0 101 139-262 183-283 (484)
410 PRK10564 maltose regulon perip 35.2 63 0.0014 31.7 4.6 41 156-196 254-295 (303)
411 COG5159 RPN6 26S proteasome re 34.0 4.6E+02 0.0099 25.6 16.4 197 57-253 8-232 (421)
412 PRK10941 hypothetical protein; 34.0 3E+02 0.0065 26.9 9.1 79 124-204 183-262 (269)
413 PF14689 SPOB_a: Sensor_kinase 33.8 1.1E+02 0.0023 21.9 4.5 22 584-605 28-49 (62)
414 PF11663 Toxin_YhaV: Toxin wit 33.3 37 0.00081 28.6 2.4 24 239-262 107-130 (140)
415 PF10475 DUF2450: Protein of u 33.0 5E+02 0.011 25.8 11.1 25 399-423 131-155 (291)
416 PF10366 Vps39_1: Vacuolar sor 32.7 2.7E+02 0.0059 22.6 7.5 24 125-148 42-65 (108)
417 PRK12798 chemotaxis protein; R 32.6 6E+02 0.013 26.6 18.9 193 65-262 125-330 (421)
418 COG5108 RPO41 Mitochondrial DN 32.3 2.3E+02 0.005 31.2 8.3 75 57-134 33-115 (1117)
419 PF10475 DUF2450: Protein of u 32.3 5.1E+02 0.011 25.7 12.1 109 127-247 103-217 (291)
420 cd08819 CARD_MDA5_2 Caspase ac 32.1 2.4E+02 0.0052 21.9 7.0 19 295-313 68-86 (88)
421 PF09986 DUF2225: Uncharacteri 31.7 4.4E+02 0.0095 24.7 11.0 61 617-677 121-193 (214)
422 PRK11639 zinc uptake transcrip 31.5 2.6E+02 0.0057 25.0 7.8 62 605-667 17-78 (169)
423 PF14561 TPR_20: Tetratricopep 31.5 2.5E+02 0.0055 21.9 8.5 33 119-151 19-51 (90)
424 PHA03100 ankyrin repeat protei 31.2 6.9E+02 0.015 26.9 13.2 208 178-428 48-277 (480)
425 KOG4521 Nuclear pore complex, 31.2 1E+03 0.022 28.7 16.3 126 546-677 985-1130(1480)
426 PRK09462 fur ferric uptake reg 31.1 2.3E+02 0.005 24.6 7.2 62 604-666 7-69 (148)
427 KOG3364 Membrane protein invol 30.8 2.1E+02 0.0046 24.4 6.3 67 85-151 30-100 (149)
428 PF04910 Tcf25: Transcriptiona 30.8 6.1E+02 0.013 26.1 20.2 128 223-356 36-167 (360)
429 PF12862 Apc5: Anaphase-promot 30.8 2.1E+02 0.0045 22.5 6.3 21 129-149 48-68 (94)
430 KOG3364 Membrane protein invol 30.6 3.5E+02 0.0075 23.2 8.9 65 612-676 30-98 (149)
431 PRK13342 recombination factor 30.4 6.7E+02 0.015 26.4 17.4 45 297-341 231-278 (413)
432 COG5187 RPN7 26S proteasome re 30.3 5.3E+02 0.012 25.3 12.5 68 579-648 115-189 (412)
433 PF12862 Apc5: Anaphase-promot 29.8 2.3E+02 0.005 22.2 6.4 25 233-257 47-71 (94)
434 KOG2063 Vacuolar assembly/sort 29.7 9.7E+02 0.021 28.1 19.2 219 511-729 506-776 (877)
435 PF10255 Paf67: RNA polymerase 29.6 2E+02 0.0044 29.9 7.4 67 228-320 123-191 (404)
436 PRK07764 DNA polymerase III su 29.6 7.7E+02 0.017 28.9 12.8 101 138-261 181-281 (824)
437 KOG4507 Uncharacterized conser 29.5 4.3E+02 0.0094 28.7 9.6 19 9-27 251-269 (886)
438 PF14432 DYW_deaminase: DYW fa 29.2 24 0.00052 29.2 0.7 19 711-729 58-76 (116)
439 KOG2396 HAT (Half-A-TPR) repea 28.9 7.5E+02 0.016 26.5 37.7 95 576-673 456-554 (568)
440 KOG1586 Protein required for f 28.4 5.2E+02 0.011 24.6 19.6 131 545-676 75-222 (288)
441 COG2178 Predicted RNA-binding 27.8 4.8E+02 0.01 23.9 10.1 18 203-220 39-56 (204)
442 PF11817 Foie-gras_1: Foie gra 27.6 3E+02 0.0066 26.5 8.1 54 514-567 183-241 (247)
443 KOG2396 HAT (Half-A-TPR) repea 26.9 8.1E+02 0.018 26.3 38.3 98 541-642 456-558 (568)
444 PF03745 DUF309: Domain of unk 26.2 1.3E+02 0.0028 21.6 3.8 49 61-109 8-61 (62)
445 PF11123 DNA_Packaging_2: DNA 25.9 2.1E+02 0.0046 21.1 4.7 30 103-133 13-42 (82)
446 KOG1498 26S proteasome regulat 25.9 7.5E+02 0.016 25.6 16.2 29 483-515 137-165 (439)
447 PF08424 NRDE-2: NRDE-2, neces 25.9 7E+02 0.015 25.2 17.5 135 174-323 47-184 (321)
448 PRK09857 putative transposase; 25.7 4.7E+02 0.01 26.0 9.1 58 590-648 217-274 (292)
449 cd07153 Fur_like Ferric uptake 25.6 1.5E+02 0.0033 24.3 5.0 47 620-666 6-52 (116)
450 KOG4279 Serine/threonine prote 25.6 9.2E+02 0.02 27.3 11.4 115 458-572 179-315 (1226)
451 PRK07003 DNA polymerase III su 25.5 9.8E+02 0.021 27.7 12.0 100 138-261 180-279 (830)
452 PF09477 Type_III_YscG: Bacter 25.4 3.7E+02 0.0081 21.9 8.7 79 524-609 21-99 (116)
453 smart00638 LPD_N Lipoprotein N 25.3 9.7E+02 0.021 26.6 24.4 22 298-320 465-486 (574)
454 PF09477 Type_III_YscG: Bacter 25.3 3.8E+02 0.0081 21.9 10.1 82 99-188 18-99 (116)
455 KOG4567 GTPase-activating prot 25.0 5.4E+02 0.012 25.6 8.7 57 529-590 263-319 (370)
456 PF11817 Foie-gras_1: Foie gra 24.8 2.7E+02 0.0058 26.9 7.1 55 162-216 182-241 (247)
457 PRK07003 DNA polymerase III su 24.7 1E+03 0.023 27.4 12.1 86 560-648 180-279 (830)
458 PF07678 A2M_comp: A-macroglob 24.6 5.3E+02 0.011 24.8 9.2 83 595-679 115-222 (246)
459 PRK06645 DNA polymerase III su 24.5 9.4E+02 0.02 26.2 12.5 103 138-262 189-292 (507)
460 PRK14700 recombination factor 24.3 7.1E+02 0.015 24.8 10.0 93 515-607 129-229 (300)
461 KOG0686 COP9 signalosome, subu 24.3 8.2E+02 0.018 25.4 13.7 173 230-436 153-351 (466)
462 cd07153 Fur_like Ferric uptake 24.2 1.6E+02 0.0034 24.2 4.8 47 93-139 6-52 (116)
463 PF06957 COPI_C: Coatomer (COP 24.2 2.3E+02 0.005 29.7 6.7 202 126-377 122-349 (422)
464 PF12968 DUF3856: Domain of Un 24.1 3.3E+02 0.0071 22.7 6.0 20 651-670 57-76 (144)
465 PRK13342 recombination factor 24.1 8.6E+02 0.019 25.6 17.7 36 593-628 244-279 (413)
466 PRK14958 DNA polymerase III su 23.6 9.8E+02 0.021 26.1 13.4 100 139-262 181-280 (509)
467 PRK14951 DNA polymerase III su 23.6 1.1E+03 0.023 26.6 13.1 32 230-262 254-285 (618)
468 PRK09462 fur ferric uptake reg 23.2 4.6E+02 0.01 22.7 7.7 20 560-579 33-52 (148)
469 PRK14963 DNA polymerase III su 23.2 1E+03 0.022 26.0 12.8 33 229-262 244-276 (504)
470 PRK11639 zinc uptake transcrip 23.2 3.6E+02 0.0078 24.1 7.1 43 300-342 32-74 (169)
471 PRK08691 DNA polymerase III su 22.9 1.2E+03 0.025 26.7 14.6 101 138-262 180-280 (709)
472 smart00804 TAP_C C-terminal do 22.7 80 0.0017 22.7 2.2 23 136-158 39-61 (63)
473 PRK10941 hypothetical protein; 22.4 7.4E+02 0.016 24.3 9.7 59 197-255 185-243 (269)
474 PF01475 FUR: Ferric uptake re 22.4 1.5E+02 0.0032 24.6 4.3 48 619-666 12-59 (120)
475 KOG1464 COP9 signalosome, subu 22.2 7.2E+02 0.016 24.1 18.7 73 229-321 147-219 (440)
476 PRK09857 putative transposase; 22.0 5.6E+02 0.012 25.5 8.8 66 547-613 209-274 (292)
477 PF12069 DUF3549: Protein of u 21.4 8.7E+02 0.019 24.7 15.9 69 295-366 199-268 (340)
478 PF04034 DUF367: Domain of unk 21.3 4.9E+02 0.011 21.9 6.8 58 579-639 66-124 (127)
479 COG2256 MGS1 ATPase related to 21.3 9.5E+02 0.021 25.1 14.2 48 295-342 248-298 (436)
480 COG2178 Predicted RNA-binding 21.2 6.5E+02 0.014 23.1 10.9 18 660-677 132-149 (204)
481 PF04910 Tcf25: Transcriptiona 21.0 9.3E+02 0.02 24.8 17.3 181 56-255 14-221 (360)
482 KOG2066 Vacuolar assembly/sort 20.9 1.3E+03 0.028 26.5 27.2 75 123-205 393-467 (846)
483 PF09454 Vps23_core: Vps23 cor 20.7 2.2E+02 0.0047 20.7 4.1 29 581-609 10-38 (65)
484 PF02847 MA3: MA3 domain; Int 20.6 4.6E+02 0.0099 21.2 6.9 21 483-503 8-28 (113)
485 KOG0991 Replication factor C, 20.6 7.5E+02 0.016 23.6 15.0 92 168-262 169-273 (333)
486 KOG4567 GTPase-activating prot 20.5 5.3E+02 0.011 25.6 7.7 58 564-626 263-320 (370)
487 PF12926 MOZART2: Mitotic-spin 20.3 4.2E+02 0.009 20.6 8.0 42 565-606 29-70 (88)
488 PF09454 Vps23_core: Vps23 cor 20.3 2.7E+02 0.0058 20.2 4.5 49 507-556 6-54 (65)
489 PF09670 Cas_Cas02710: CRISPR- 20.2 9.9E+02 0.021 24.9 11.5 123 129-255 138-269 (379)
490 PF01475 FUR: Ferric uptake re 20.2 2.2E+02 0.0048 23.5 4.9 46 514-559 12-57 (120)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-88 Score=779.38 Aligned_cols=658 Identities=15% Similarity=0.154 Sum_probs=609.9
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcch
Q 004279 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 89 (764)
...++..|++.|+.++|. .+|+++ |+++..+|+.+|.+|++.|++++|+++|++|...|+.||..|
T Consensus 124 ~n~li~~~~~~g~~~~A~-~~f~~m-------------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAW-YVFGKM-------------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred HHHHHHHHHhCCChHHHH-HHHhcC-------------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 456788899999999999 555555 345678899999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004279 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
|+.++++|+..+++..+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||.++||+||.+|+
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~ 264 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYF 264 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999963 68899999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-cCCCCHHhHHHHHHHhhccCCHHHHHH
Q 004279 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
+.|++++|+++|++|.+.|+.||..||+.+|.+|.+.|+++.+.+++..+.+ +..||..+|+.|+.+|++.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 699999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc
Q 004279 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 328 (764)
+|++|.+ |+. .+||++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 345 vf~~m~~----~d~-------------------------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 345 VFSRMET----KDA-------------------------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHhhCCC----CCe-------------------------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 9999964 444 69999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcC
Q 004279 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408 (764)
Q Consensus 329 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 408 (764)
.||+.++.+|++.|+++.|.++++.|.+.|+.|+..++++||++|+++|++++|.++|++|.+. |.++||++|.+|++.
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLN 468 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHh
Q 004279 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488 (764)
Q Consensus 409 g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (764)
|+.++|+.+|++|..+++||..||+.+|.+|++.|.+ +....++..+.+.|+.++..++|+|+++|+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l-------------~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL-------------MCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH-------------HHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 9999999999999889999999999999999998765 566778889999999999999999999999
Q ss_pred ccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 004279 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568 (764)
Q Consensus 489 ~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 568 (764)
++|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+
T Consensus 536 k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 536 RCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 999999999999998 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004279 569 MMV-RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 569 ~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
.|. +.|+.|+..+|++++++|++.|++++|.+++++| +++||..+|++|+.+|..+|+.+.++...+++.+ +.|
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p 688 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDP 688 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCC
Confidence 999 6799999999999999999999999999999998 4799999999999999999999999999999985 677
Q ss_pred CHhhHHHH-HHHHHhcCChHHHHHHHHHHHHhhhcccc-CchHhhHHHHHHhhhhccHHHH-------------------
Q 004279 648 DPSTCHFV-FSGYVNCGFHNSAMEALQVLSMRMLCEEV-STLEEKRSDFEDLILAEDSEAE------------------- 706 (764)
Q Consensus 648 ~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------- 706 (764)
+...++.+ .+.|+..|+|++|.++.+.|+.+|+.+.+ ++|+++.+.++.|+.++..++.
T Consensus 689 ~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 689 NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 76655554 56999999999999999999999998765 7887776666666555433211
Q ss_pred -------------HHHHHHhhhcchhhHHHHhhhhhhhhhccCCccccccccc
Q 004279 707 -------------SRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746 (764)
Q Consensus 707 -------------~~~~~~~~~~~e~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 746 (764)
.+--+.+..|+|+||+++||+++ ++|.||++.|+-.
T Consensus 769 ~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~----~~~~~i~i~knlr 817 (857)
T PLN03077 769 LAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINT----VPGMPIWVTKNLY 817 (857)
T ss_pred cCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcC----CCCCeEEEeCCCE
Confidence 11223466799999999999999 9999999998754
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-79 Score=704.89 Aligned_cols=602 Identities=15% Similarity=0.168 Sum_probs=535.1
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004279 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
+.+....++.++..+++.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+..+.+.+++..+.+.+..++...+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004279 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
++..|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|...|+.||..||+++|++|...+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999963 7899999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHc-cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcc
Q 004279 208 NLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 208 ~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
++..+.+++..+.+ +..||..+++.|+.+|++.|+++.|.++|++|.+ |+.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~------------------------ 253 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDC------------------------ 253 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCc------------------------
Confidence 99999999999997 6999999999999999999999999999999974 443
Q ss_pred cchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHH
Q 004279 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 366 (764)
.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|
T Consensus 254 -------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 254 -------ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred -------chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCc
Q 004279 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAP 445 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~ 445 (764)
++|+.+|+++|++++|.++|++|... |.++||++|.+|++.|++++|+++|++|.+ |+.||..||+.++.+|++.|++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 99999999999999999999999887 999999999999999999999999999999 9999999999999999998765
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh
Q 004279 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 525 (764)
+.+..++..+.+.|+.|+..++++|+++|+++|++++|.++|+++ ..+|.++||++|.+|++.|+.
T Consensus 406 -------------~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 406 -------------DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI-PEKDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred -------------HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCeeeHHHHHHHHHHCCCH
Confidence 555677888999999999999999999999999999999999998 568999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004279 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 526 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
++|+.+|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|+.+
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999986 5999999999999999999999999999999999888777777777777777777777777776664
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-Hhhhcccc
Q 004279 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS-MRMLCEEV 684 (764)
Q Consensus 606 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 684 (764)
.||..+|++||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. ..++.|..
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 566677777777777777777777777777766777777777777777777777777777777666 34554432
Q ss_pred CchHhhHHHHHHhhhhccHHHHHHHHHHh
Q 004279 685 STLEEKRSDFEDLILAEDSEAESRILQFC 713 (764)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
......+..+...++.+.+.++++.+
T Consensus 626 ---~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 626 ---KHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 23344455555555555555554443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-72 Score=630.44 Aligned_cols=532 Identities=14% Similarity=0.187 Sum_probs=464.3
Q ss_pred CChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-cCCCCHHhHHHH
Q 004279 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKF 233 (764)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 233 (764)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|.+.++++.+.+++..+.+ +..||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344566666666666666666666666666543 556666666666666666666666666666664 466677777777
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHH
Q 004279 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 313 (764)
+.+|++.|+++.|.++|++|.+ |+. .+||++|.+|++.|++++|+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~-------------------------------~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNL-------------------------------ASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCe-------------------------------eeHHHHHHHHHHCcCHHHHH
Confidence 7788889999999999999864 454 69999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004279 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 393 (764)
++|++|.+.|+.||..||+.++.+|++.|+...+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|...
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~- 288 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK- 288 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCC
Q 004279 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472 (764)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (764)
|+++||+||.+|++.|++++|+++|++|.+ |+.||..||++++.+|++.|.+ +.+..++..|.+.|
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~-------------~~a~~i~~~m~~~g 355 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL-------------EHAKQAHAGLIRTG 355 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch-------------HHHHHHHHHHHHhC
Confidence 999999999999999999999999999999 9999999999999999998765 45567788899999
Q ss_pred CCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004279 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 473 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
+.||..++++|+++|+++|++++|.++|+++ ..||+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRM-PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999998 568999999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004279 553 CCSIIRCFKSASALVSMMVR-DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631 (764)
Q Consensus 553 ~~~~~~~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 631 (764)
+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++|+.+|+.+|+++
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999986 699999999999999999999999999999876 68999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhccc-cCchHhhHHHHHHhhhhccHHHH---
Q 004279 632 VIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFEDLILAEDSEAE--- 706 (764)
Q Consensus 632 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 706 (764)
.|..+++++. ++.|+ ..+|..|+++|++.|+|++|.++++.|+.+|+.+. +++|.++.+.++.|+.++..+..
T Consensus 512 ~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 512 LGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 9999999997 56675 67999999999999999999999999999998643 46776655444444443322211
Q ss_pred ------------------------------HHHHHHhhhcchhhHHHHhhhhhhhhhccCCccccccccc
Q 004279 707 ------------------------------SRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746 (764)
Q Consensus 707 ------------------------------~~~~~~~~~~~e~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 746 (764)
.+-.+.+..|+|+||++++|+++ ++|.||+..|+-.
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~----~~~~~i~i~knlr 655 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT----SEWTPLQITQSHR 655 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC----CCCCeEEEecCCE
Confidence 11123366799999999999999 9999999998754
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.9e-69 Score=600.60 Aligned_cols=516 Identities=16% Similarity=0.234 Sum_probs=472.3
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004279 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
.++...|..++..|++.|++++|.++|++|.+..-+.++..+++.++.+|.+.|.+++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 56777888999999999999999999999976544567888888999999999999999999998875 89999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHc-cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004279 199 LLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
+|.+|++.|+++.|.++|+.|.+ +..||..+|+.||.+|++.|+++.|.++|++|.+.|+.|+.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv--------------- 507 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV--------------- 507 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH---------------
Confidence 99999999999999999999986 58999999999999999999999999999999999999987
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-
Q 004279 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ- 356 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~- 356 (764)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus 508 ----------------vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 508 ----------------HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred ----------------HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999999999999999999976
Q ss_pred -CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHh
Q 004279 357 -NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRT 431 (764)
Q Consensus 357 -~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t 431 (764)
.|+.||..+|+++|.+|++.|++++|.++|+.|.+.+ +..+||++|.+|++.|++++|+++|++|.+ |+.||..|
T Consensus 572 ~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 6789999999999999999999999999999998875 678999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc---CCCCC
Q 004279 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS---KTPLG 508 (764)
Q Consensus 432 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~ 508 (764)
|+.++.+|++.|+. +.+..++..|.+.|+.|+..+|++|+.+|+++|++++|.++|++| +..||
T Consensus 652 ynsLI~a~~k~G~~-------------eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 652 FSALVDVAGHAGDL-------------DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHHHHHHhCCCH-------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999988765 445567778999999999999999999999999999999999887 46799
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004279 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|+..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004279 589 LLD----Y-------------------GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 589 ~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
|.+ + +..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence 432 2 12467999999999999999999999999888889999999999999988889
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhcccc
Q 004279 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684 (764)
Q Consensus 646 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 684 (764)
.|+..+|++++.++.+. .++|..++++|...|+.|..
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 99999999999998432 36899999999999998875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-67 Score=589.30 Aligned_cols=516 Identities=16% Similarity=0.215 Sum_probs=479.1
Q ss_pred CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004279 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 162 (764)
.++...|..++..|.+.|+++.|+++|++|.+.|+ +++..+++.++..|++.|.+++|..+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 46677799999999999999999999999999985 57788888999999999999999999998853 8999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-cCCCCHHhHHHHHHHhhccC
Q 004279 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 241 (764)
.||.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|+.|.+ +..||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999986 58899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004279 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
++++|.++|+.|.+.|+.|+. .+|++||.+|++.|++++|.++|++|..
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~-------------------------------vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDR-------------------------------VVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCH-------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999986
Q ss_pred --CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCc
Q 004279 322 --LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396 (764)
Q Consensus 322 --~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~ 396 (764)
.|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...+ |..
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999876 888
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCC
Q 004279 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475 (764)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (764)
+|+++|.+|++.|++++|.++|++|.+ |+.||..+|+++|.+|++.|.++++ ..++..|.+.|+.|
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA-------------~~lf~eM~~~g~~P 717 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA-------------LELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-------------HHHHHHHHHcCCCC
Confidence 999999999999999999999999999 9999999999999999999876444 45566788889999
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004279 476 SHISMKNLLKALGAEGMIRELIQYFCDS---KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
|..+|+.||.+|++.|++++|.++|++| +..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999876 5679999999999999999999999999999999999999999999997
Q ss_pred HHHc----c-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004279 553 CCSI----I-------------------RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 553 ~~~~----~-------------------~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
.|.+ . +..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6542 1 1236799999999999999999999999999999999999999999998889
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004279 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 610 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
..|+..+|++||+++++. .++|..++++|...|+.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999998532 478999999999999999986
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-63 Score=558.70 Aligned_cols=468 Identities=15% Similarity=0.140 Sum_probs=399.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhcc-CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004279 52 SKATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
...|..++..+.+.|++++|+++|+.|...+ ..|+..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3478899999999999999999999998764 678999999999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChh
Q 004279 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
+|++.|++++|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|...|+.+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999963 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccch
Q 004279 211 AVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 211 ~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
.+.+++..+.+ +..+|..+|+.|+.+|+++|++++|.++|+.|.+ ++.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~--------------------------- 290 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTT--------------------------- 290 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CCh---------------------------
Confidence 99999999987 5899999999999999999999999999999964 333
Q ss_pred hhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHH
Q 004279 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 369 (764)
.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..++++|
T Consensus 291 ----vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 291 ----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred ----hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhh
Q 004279 370 SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEE 448 (764)
Q Consensus 370 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~ 448 (764)
+++|+++|++++|.++|++|.+. |..+||+||.+|++.|+.++|+++|++|.+ |+.||..||+.+|.+|++.|..+++
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999887 999999999999999999999999999999 9999999999999888877655333
Q ss_pred chhhhhhhhHHHHHHHHHHHHH-CCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhH
Q 004279 449 GNMFSQVDSAKRINAIEMDMAR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527 (764)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 527 (764)
..++..|.+ .|+.|+..+|+.++++|++.|++++|.++++++...|+..+|++++.+|..+|+.+.
T Consensus 446 -------------~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 446 -------------WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred -------------HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 333444443 466666555666666665555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 004279 528 AMEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575 (764)
Q Consensus 528 A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 575 (764)
|..+++++.+. .| +..+|..+++.|++.|++++|.++++.|.+.|+
T Consensus 513 a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 513 GRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 55555555432 23 234555555555555555555555555555554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-32 Score=323.49 Aligned_cols=632 Identities=11% Similarity=-0.018 Sum_probs=499.7
Q ss_pred hhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC
Q 004279 7 RTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG 86 (764)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~ 86 (764)
..........+...|++++|+ ..+ ...+...|+.. ..+......+...|++++|...|+.+.+.. +.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~-~~~---------~~~l~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDAR-ETL---------QDALKSAPEYL-PALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHH-HHH---------HHHHHhCCCch-hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 334445566678899999999 333 33445555532 223344556778999999999999988765 345
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004279 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+...|+++.|.+.++.+.+.+ +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+..
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 405 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGI 405 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 5667778888889999999999999998775 5567788899999999999999999999986532 335567888888
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004279 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+...|++++|.+.|+.+.+.... .......++..+...|++++|.++++.+.+..+.++.++..+..+|...|++++|
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999876533 3345566777889999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004279 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 247 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 326 (764)
...|+++.+ ..|+.. ..+..+...+...|++++|.+.|+++.+.+ +.
T Consensus 485 ~~~~~~a~~--~~~~~~------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 485 REAFEKALS--IEPDFF------------------------------PAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHHHHh--hCCCcH------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 999999987 444431 477788899999999999999999998764 33
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHH
Q 004279 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAA 404 (764)
Q Consensus 327 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~ 404 (764)
+..++..+...+.+.|+.++|..+++++.+.+.. +...+..++..|.+.|++++|..+++.+.... +...|..+...
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5677888888999999999999999999887643 56677788999999999999999999987653 66788999999
Q ss_pred HhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 004279 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484 (764)
Q Consensus 405 ~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (764)
|.+.|++++|+..|+++.+..+.+...+..+...+...|++.++...+ ..+.+. .+.+...+..+.
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------------~~~~~~-~~~~~~~~~~l~ 676 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL-------------KRALEL-KPDNTEAQIGLA 676 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH-------------HHHHhc-CCCCHHHHHHHH
Confidence 999999999999999998722335566777777777777765554333 223322 234567788899
Q ss_pred HHHhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 004279 485 KALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562 (764)
Q Consensus 485 ~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 562 (764)
..+...|++++|.++++.+. .+.+...+..+...+...|++++|+..|+++...+ |+..++..+..++.+.|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 99999999999999988763 23456678888889999999999999999998864 566778888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004279 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 563 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
|...++.+.+.. +.+...+..+...|.+.|++++|.++|+++.+.. +++..+++.+...+...|+ .+|+..++++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 999999988764 4577888889999999999999999999998754 5678889999999999999 889999999986
Q ss_pred CCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHHHh
Q 004279 643 NKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFC 713 (764)
Q Consensus 643 ~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
. .| +..++..+..++...|++++|.++++++...+.. ...........+...++.+.+..+++.+
T Consensus 832 ~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 832 L--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE----AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred h--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 34 3445566677889999999999999988765432 2333344566777778888777776654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-31 Score=316.86 Aligned_cols=606 Identities=12% Similarity=0.001 Sum_probs=499.2
Q ss_pred cccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 004279 3 RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH 82 (764)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~ 82 (764)
.|.....+..++..+...|++++|. ..++.+ ....|......+ .....+...|++++|+..|+.+.+.+
T Consensus 223 ~p~~~~~~~~~~~~~~~~g~~~~A~-~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 223 RPNNPAVLLALATILIEAGEFEEAE-KHADAL---------LKKAPNSPLAHY-LKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH---------HHhCCCCchHHH-HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4666677888999999999999999 444433 444454333322 23444667899999999999998765
Q ss_pred CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004279 83 HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 162 (764)
+.....+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.+.. +.+...++
T Consensus 292 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 367 (899)
T TIGR02917 292 -PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALS 367 (899)
T ss_pred -CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 2223344555667778999999999999998874 4566778888999999999999999999987543 44667899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004279 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+.+.|++++|.++|+.+.+..+ .+...+..+...+...|++++|.+.++.+.+..+........++..+.+.|+
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 999999999999999999999987643 2556777788888999999999999999998766677778888999999999
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004279 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
++.|.++++.+.+. .|+. ..+|+.+...+...|++++|.+.|+++.+.
T Consensus 447 ~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 447 FDKALAAAKKLEKK--QPDN------------------------------ASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHHHHHHh--CCCC------------------------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 99999999999873 3332 158999999999999999999999999875
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHH
Q 004279 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSA 400 (764)
Q Consensus 323 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 400 (764)
. +.+...+..+...+...|++++|..+++.+.+.+.. +..++..+...+.+.|+.++|...++++.... +...+..
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 4 234456777888899999999999999999987654 67788899999999999999999999986653 6677888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHH
Q 004279 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 401 li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
+...|.+.|++++|..+++++....+.+..++..+..++...|++.++...+. .+.+.. +.+...+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK-------------KLLALQ-PDSALAL 638 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------------HHHHhC-CCChHHH
Confidence 99999999999999999999988555677888888899988887765544333 333322 3456678
Q ss_pred HHHHHHHhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004279 481 KNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 481 ~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 558 (764)
..+...|.+.|++++|...|++.. .+.+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 889999999999999999998752 23457799999999999999999999999999875 457778888899999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004279 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 638 (764)
++++|...|+.+.+.+ |+..++..+..++.+.|++++|.+.++++.... +.+...+..+...|...|+.++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999864 555778889999999999999999999998753 5678899999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004279 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 639 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
++.+.. +++...+..+...+...|+ ++|++++++....
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999753 4567788888899999999 8899999987653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=7.7e-23 Score=241.15 Aligned_cols=619 Identities=11% Similarity=0.012 Sum_probs=431.0
Q ss_pred CcccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHH---------------HHHHHHHHHhcC
Q 004279 2 YRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKA---------------TQMQIVDALCRG 66 (764)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~---------------~~~~i~~~~~~~ 66 (764)
..|..-..+...+..+.+.|+.++|. .. +.......|+..... .......+...|
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~-~~---------l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQ-KL---------LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHH-HH---------HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 35666677888889999999999999 33 334455566543321 233445678899
Q ss_pred CcchHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004279 67 ERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
++++|++.|+++.+.+ +++... ...........|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..|
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998765 344322 1122222335689999999999999985 556778889999999999999999999
Q ss_pred HHHhhhcCCC---------------CC---hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004279 146 YFLGERYGIY---------------PI---LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 146 ~~~~~~~~~~---------------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+++.+..... ++ ...+...+..+-.......|...+..+......|+... ...-..+...|
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g 283 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSG 283 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCC
Confidence 9985421100 00 00122222222223334556666666554433333322 12344567899
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCccc
Q 004279 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
++++|...|++..+..+.+..++..+..+|.+.|++++|+..|++..+. .|+..........+
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~--~p~~~~~~~~~~ll--------------- 346 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDKWESLL--------------- 346 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCccchhHHHHHH---------------
Confidence 9999999999999988889999999999999999999999999999873 34321000000000
Q ss_pred chhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH
Q 004279 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 367 (764)
.....+........+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+.... +...+.
T Consensus 347 -~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 347 -KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred -HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 00000111223456788999999999999999864 224556777888999999999999999999987544 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-----------CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCC-HHhHHHH
Q 004279 368 TLSVECSKALELDLAEALLDQISRCT-----------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD-IRTYELL 435 (764)
Q Consensus 368 ~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~-~~t~~~l 435 (764)
.+...|. .++.++|..+++.+.... ....+..+...+...|++++|+..|++..+ ..|+ ...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~-~~P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA-LDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 6777664 467899999988764321 123455667788899999999999999987 3344 4445555
Q ss_pred HHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCC---CCh---
Q 004279 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGT--- 509 (764)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~--- 509 (764)
-..+...|++.++... ++.+.+.. +.+...+..+...+...++.++|...++..... ++.
T Consensus 502 A~~~~~~G~~~~A~~~-------------l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 502 AQDLRQAGQRSQADAL-------------MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred HHHHHHcCCHHHHHHH-------------HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 5666666665444433 33333322 223334444555667889999999999876321 111
Q ss_pred ------hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004279 510 ------PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583 (764)
Q Consensus 510 ------~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 583 (764)
..+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|...|+...+.. +.+...+.
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~ 641 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARL 641 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 1123456678889999999999882 24556677778888999999999999999999864 33577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHhhHHHHHH
Q 004279 584 ALIKILLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV--QP---DPSTCHFVFS 657 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~ll~ 657 (764)
.++..|...|++++|++.++..... .| +..++..+...+...|+.++|.++++++....- .| +...+..+..
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence 9999999999999999999988753 44 456677788889999999999999999986422 12 1234555567
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 004279 658 GYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 658 ~~~~~g~~~~a~~~~~~~~~ 677 (764)
.+...|++++|++.++....
T Consensus 720 ~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 720 FEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999988653
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.2e-21 Score=228.82 Aligned_cols=595 Identities=12% Similarity=0.039 Sum_probs=402.4
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcc
Q 004279 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 88 (764)
.|...++.....++.+.|. ..+.++....|+. ...+..++..+...|+.++|.+.++++.+.. |+..
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~----------~~l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~ 96 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVR----------QSLYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSN 96 (1157)
T ss_pred HHHHHHHHHHhhCChHHHH----------HHHHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCCh
Confidence 3556666677777777777 4444456677775 4555666777889999999999999998876 3332
Q ss_pred hH-----------------HHHHHHhhCCCChhHHHHHHHHHHHcCccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004279 89 DF-----------------FHILNYCARSPDPLFVMETWRMMEEKEIGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 89 ~~-----------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
.+ ..+.+.+...|++++|.+.|+.+.+.+ +|+.. ............|+.++|++.|+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Confidence 22 223346778899999999999988764 34432 121222223346899999999999976
Q ss_pred hcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhhH-----------------HHHHHHHHhccChhH
Q 004279 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--EVTY-----------------TELLKLAVWQKNLSA 211 (764)
Q Consensus 151 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~-----------------~~ll~~~~~~~~~~~ 211 (764)
.+ +-+...+..+...+...|+.++|+..|+++........ ...| ...+..+-.....+.
T Consensus 176 ~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 176 DY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred hC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 54 33455777888889999999999999999865421100 0011 111111111112333
Q ss_pred HHHHHHHHHcc-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchh
Q 004279 212 VHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
+...+...... ..|.. ........+...|++++|+..|++..+ ..|+.
T Consensus 254 A~~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~--~~P~~---------------------------- 302 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVR--ANPKD---------------------------- 302 (1157)
T ss_pred HHHHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC----------------------------
Confidence 44444433322 12221 122345667788999999999999988 45544
Q ss_pred hhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHH------------HHHHHHHhcCChhHHHHHHHHHH
Q 004279 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYD------------GFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~------------~li~~~~~~~~~~~a~~~~~~m~ 355 (764)
...+..+...+.+.|++++|+..|++..+.. |+.. .+. .....+.+.|++++|...|+++.
T Consensus 303 --~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 303 --SEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1478889999999999999999999988753 3321 111 12335668899999999999999
Q ss_pred HCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCC-C---
Q 004279 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP-D--- 428 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p-~--- 428 (764)
+.... +...+..+...|...|++++|++.|++..... +...+..+...|. .+++++|+..++.+.. .... .
T Consensus 379 ~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 379 QVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 87644 55667788899999999999999999987653 4445666666664 4678999988876643 1100 0
Q ss_pred ----HHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcC
Q 004279 429 ----IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504 (764)
Q Consensus 429 ----~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 504 (764)
...+..+-..+...|++ ......+....+.. +-+...+..+...|.+.|++++|...|++..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~-------------~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKW-------------AQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00111122222233333 33334444444332 2245667778889999999999999998752
Q ss_pred -CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHccCChhHHHHHHHHHHHC
Q 004279 505 -TPL-GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA---------TYNIMIDCCSIIRCFKSASALVSMMVRD 573 (764)
Q Consensus 505 -~~~-~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 573 (764)
..| +...+..+...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++.
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 223 34445555556677899999999998865433222221 123455678888999999999872
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hhH
Q 004279 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-STC 652 (764)
Q Consensus 574 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~ 652 (764)
.+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|+.++|++.++...+ ..|+. ...
T Consensus 599 -~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~ 674 (1157)
T PRK11447 599 -QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQ 674 (1157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHH
Confidence 34556677889999999999999999999998753 44678899999999999999999999998875 45543 445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh
Q 004279 653 HFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 653 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
..+..++...|++++|.++++.+...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 55667889999999999999987654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.5e-18 Score=195.16 Aligned_cols=602 Identities=10% Similarity=0.000 Sum_probs=398.2
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHH
Q 004279 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY 96 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 96 (764)
+...|++++|+ ..|.+.+..+|+. ......+...|...|+.++|+..+++..+.+ |+...|..++..
T Consensus 54 ~~~~Gd~~~A~----------~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~ 120 (987)
T PRK09782 54 AQKNNDEATAI----------REFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAA 120 (987)
T ss_pred HHhCCCHHHHH----------HHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 44459999999 5666668889997 6777888999999999999999999999875 444445444433
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH--------HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH-HHH
Q 004279 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA--------LCKGGYLEEASNLIYFLGERYGIYPILPVYNSF-LGA 167 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~ 167 (764)
. ++++.|.++++++.+.. +-+..++..+... |.+.+...++++ .. .....|+..+.... ...
T Consensus 121 i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr-~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DA-TFAASPEGKTLRTDLLQR 191 (987)
T ss_pred h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hh-hhCCCCCcHHHHHHHHHH
Confidence 3 78889999999999985 4456666666665 666644444444 21 22233445545555 899
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004279 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW-QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
|.+.|++++|++++..+.+.++. +..-...|-.+|.. .++ +.+..+++. ....++..+..+...|.+.|+.+.|
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~---~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ---GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch---hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999998644 34445566667776 366 777777553 3447889999999999999999999
Q ss_pred HHHHHHHHHhhhc-ccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004279 247 YETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 247 ~~~~~~m~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 325 (764)
.+++.++...-.. |.........+........-..++.. +..+-.....-.++..+.+.++++.+.++.. +.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 9999998763222 22211100011111110000000000 1111101223344778888899886665522 24
Q ss_pred CCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CC----Ccch
Q 004279 326 PSSHTYDGFIRAIV--SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TN----PKPF 398 (764)
Q Consensus 326 p~~~t~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~ 398 (764)
|.... ..++... ..+...++.+.+..|.+.... +....-.+.....+.|+.++|.++|...... ++ ...-
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 44442 2333333 346777888888888776433 5555556666678899999999999998763 22 2234
Q ss_pred HHHHHHHhcCCC---HHHHHHH----------------------HHHHhh--ccCCC---HHhHHHHHHHhcCCCCchhh
Q 004279 399 SAFLAACDTMDK---PERAIKI----------------------FAKMRQ--KLRPD---IRTYELLFSLFGNVNAPYEE 448 (764)
Q Consensus 399 ~~li~~~~~~g~---~~~a~~l----------------------~~~m~~--~~~p~---~~t~~~ll~~~~~~~~~~~~ 448 (764)
+-++..|.+.+. ..++..+ +..... +..|+ ...+..+-.++.. +.+.++
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 466777777766 3344333 222222 22222 2222222222221 222111
Q ss_pred chhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChhH
Q 004279 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESHR 527 (764)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 527 (764)
. ..+...... .|+......+...+...|++++|...|++... +|+...+..+...+.+.|+.++
T Consensus 496 i------------~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 496 L------------YAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred H------------HHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHH
Confidence 1 112222222 25544433455556789999999999987633 3445567777788899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004279 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 528 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
|...|++..+.+ +++...+..+...+...|++++|...+++..+. .|+...|..+..++.+.|+.++|+..+++...
T Consensus 561 A~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 561 RDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998864 223333334444455669999999999999985 46788899999999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 608 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.. +.+...++.+...+...|+.++|+..+++..+ ..|+ ...+..+-.++...|++++|+..+++...
T Consensus 638 l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 638 LE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 53 33566888888899999999999999999986 4564 45666677799999999999999997754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.1e-17 Score=188.25 Aligned_cols=552 Identities=9% Similarity=-0.036 Sum_probs=368.1
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004279 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
+...|++++|+..|++..+.. |-+...+..+..+|...|++++|+..+++..+.+ +-|...+..+ ..+ +++++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhH
Confidence 445699999999999999887 4456778899999999999999999999999884 3344444444 333 899999
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHH--------HhccCCHHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhccChhHH
Q 004279 142 SNLIYFLGERYGIYPILPVYNSFLGA--------CAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL-LKLAVWQKNLSAV 212 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a 212 (764)
..+++++.+.++- +..++..+... |.+. +.|.+.++ .+...+.|+..+.... .+.|...++++.|
T Consensus 128 ~~~ye~l~~~~P~--n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 128 VTTVEELLAQQKA--CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHhCCC--ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 9999999876533 33345444444 6655 55555555 4444445556555555 8899999999999
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhc-cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004279 213 HEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
.+++..+.+..+.+......|..+|.. .++ +.+..+++.. ++.+.
T Consensus 202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~----------------------------- 247 (987)
T PRK09782 202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDP----------------------------- 247 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCH-----------------------------
Confidence 999999999888888888888888888 466 7777775532 22222
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCcccHHHHH------------------------------HHHHh
Q 004279 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PSSHTYDGFI------------------------------RAIVS 340 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li------------------------------~~~~~ 340 (764)
..+..+...|.+.|+.++|.++++++...-.. |+..++--++ ..+.+
T Consensus 248 --~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (987)
T PRK09782 248 --QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLK 325 (987)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHh
Confidence 48889999999999999999999998654322 4444443322 22223
Q ss_pred cCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH--hcCCHHHHHHHHHHHhhC-C-CCcchHHHHHHHhcCCCHHHHHH
Q 004279 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS--KALELDLAEALLDQISRC-T-NPKPFSAFLAACDTMDKPERAIK 416 (764)
Q Consensus 341 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~ 416 (764)
.++++.+.++ + .+.|.... ..+.... ..+...++...+..|-.. + +...-..+..-..+.|+.++|.+
T Consensus 326 ~~~~~~~~~~----~--~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 326 EGQYDAAQKL----L--ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred ccHHHHHHHH----h--cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 3333322222 1 12222222 1222211 224455555555555544 2 44444444455678899999999
Q ss_pred HHHHHhh---ccCCCHHhHHHHHHHhcCCCCchhhchhhhh---hhhHH---------HHHHHHHHH-HHCCC-CC--cH
Q 004279 417 IFAKMRQ---KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ---VDSAK---------RINAIEMDM-ARNNI-QH--SH 477 (764)
Q Consensus 417 l~~~m~~---~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~-~~~~~-~~--~~ 477 (764)
+|+.... .-.++.....-++..+...+.+....+...- ++... ......... ...+. ++ +.
T Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~ 477 (987)
T PRK09782 398 LLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDA 477 (987)
T ss_pred HHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCH
Confidence 9998876 2233333444566666665543222221110 11000 001111111 11122 23 56
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHhc-CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004279 478 ISMKNLLKALGAEGMIRELIQYFCDS-KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 478 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
..+..+...+.. ++.++|...+.+. ...|+......+...+...|++++|...|+++... .|+...+..+..++.+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 677777777776 7888899866553 34465443333445556899999999999998664 4555566677778889
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004279 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636 (764)
Q Consensus 557 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 636 (764)
.|+.++|...++...+.. +.+...+..+...+.+.|++++|...+++..+. .|+...|..+...+.+.|+.++|+..
T Consensus 555 ~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998864 223333334444555669999999999999854 67888999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHH-HHHHHHHhcCChHHHHHHHHHHHH
Q 004279 637 IEQMHQNKVQPDPSTCH-FVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 637 ~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+++..+ ..|+...+. .+-.++...|++++|++.++....
T Consensus 632 l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 632 LRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999996 567665544 444589999999999999997654
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.3e-16 Score=164.38 Aligned_cols=562 Identities=7% Similarity=-0.007 Sum_probs=268.4
Q ss_pred hcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc---cCCHHH
Q 004279 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK---GGYLEE 140 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~ 140 (764)
..+++..|+.+|......+....+.....+..++.+.++.+.|+-.|++..+.+ +-++.++-.|...-.. ...+..
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHH
Confidence 345666666666664433321112222223334445566666666666666553 1222233222222111 123444
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhccChhHHHHHHHH
Q 004279 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
+..++...-..++ -|.+..+.|.+-|.-.|+++.++.+...+...... .-...|-.+-++|...|++++|...|-.
T Consensus 255 ~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 255 GVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5555544433332 23335555666666666666666666555543211 1122355556666666666666666655
Q ss_pred HHccCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHH
Q 004279 219 YIKHYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297 (764)
Q Consensus 219 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (764)
..+..+.+ ...+--|...|.+.|+.+.+...|+.+.+ ..|+.+ .+..
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~------------------------------etm~ 380 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNY------------------------------ETMK 380 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchH------------------------------HHHH
Confidence 55543333 44444555666666666666666666655 334331 2333
Q ss_pred HHHHHHHccC----CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCchhHHHHH
Q 004279 298 DVIHACGRTQ----NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM----QQNNLKPQDSTIATL 369 (764)
Q Consensus 298 ~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l 369 (764)
.|...|...+ ..+.|..++....+.- ..|...|-.+-..+.. ++....+.+|... ...+-.+.....|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 3333333332 3345555555544432 2234444333333332 2322224444332 223333445555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC------CCc------chHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHH
Q 004279 370 SVECSKALELDLAEALLDQISRCT------NPK------PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437 (764)
Q Consensus 370 i~~~~~~g~~~~A~~~~~~~~~~~------~~~------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~ 437 (764)
...+...|+++.|...|+.....- +.. +--.+...+-..++.+.|.+.|..+.. -.|.-++-..-+.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk-ehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK-EHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCchhHHHHHHhh
Confidence 666666666666666665554330 110 011122333334455555566555554 1122211111111
Q ss_pred HhcCC-CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh----cCCCCChhhH
Q 004279 438 LFGNV-NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTY 512 (764)
Q Consensus 438 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~ 512 (764)
+.++. +...++.. .+-.-+. ....++.+++-+-..|.+...+..|.+-|.. ....+|+.+.
T Consensus 538 ~ma~~k~~~~ea~~------------~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 538 CMARDKNNLYEASL------------LLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HHHHhccCcHHHHH------------HHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 11100 00000000 0000011 1112222233333345555555555443322 2222333333
Q ss_pred HHHHHHHHH------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 004279 513 NTVLHSLVE------------AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580 (764)
Q Consensus 513 ~~li~~~~~------------~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 580 (764)
-+|.+.|.+ .+..++|+++|.+..+.. +-|...-+.+--.++..|++.+|..+|.+..+... -...
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCc
Confidence 333333322 234567777777777654 33556666666677777888888888877776543 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH---
Q 004279 581 TYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF--- 656 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll--- 656 (764)
+|-.+..+|..+|++-.|+++|+..... .-..++.+...|.+++.+.|.+.+|.+.+.........-....||..+
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 4666777777888888888888776653 333456677777788888888877777776666432222223333322
Q ss_pred ---------------HHHHhcCChHHHHHHHHHHHHhh
Q 004279 657 ---------------SGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 657 ---------------~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
......+..+.|.++|..|...+
T Consensus 762 kla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 762 KLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11222344566777777776544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=8.6e-18 Score=166.90 Aligned_cols=439 Identities=13% Similarity=0.089 Sum_probs=240.5
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004279 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+....-+.|++++|.+......+.+ +.+......+-..+.+..+.+...+.-....+.. +--..+|..+.+.+-..|+
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhch
Confidence 3444445666666666655544443 2222222222233334444443332222222221 2234466666666666666
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhccChhHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE-LLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~ 216 (764)
+++|+.+++.+.+.. +-.+..|..+..++...|+.+.|...|.+..+. .|+.....+ +-......|.+++|...|
T Consensus 132 ~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 666666666665432 123345666666666666666666666666653 444443332 222233455566666666
Q ss_pred HHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004279 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.+.++..+.-.++|+.|...+-..|+...|+..|++..+ ++|+-. .+|
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~------------------------------dAY 255 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFL------------------------------DAY 255 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcch------------------------------HHH
Confidence 555555555555556666556566666666666665555 333321 255
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHh
Q 004279 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 375 (764)
-.|-..|...+.+++|+..|.+.... .|+. ..+..+...|-..|.++.|...|++.++....
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--------------- 318 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--------------- 318 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---------------
Confidence 55555555555555555555554432 2332 33444444444555555555555555544322
Q ss_pred cCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhh
Q 004279 376 ALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455 (764)
Q Consensus 376 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 455 (764)
-+..|+.|..++-..|++.+|.+.|.+... +.|+
T Consensus 319 ------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-l~p~--------------------------- 352 (966)
T KOG4626|consen 319 ------------------FPDAYNNLANALKDKGSVTEAVDCYNKALR-LCPN--------------------------- 352 (966)
T ss_pred ------------------chHHHhHHHHHHHhccchHHHHHHHHHHHH-hCCc---------------------------
Confidence 233445555555555555555555444433 1110
Q ss_pred hhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-CCCCC-hhhHHHHHHHHHHcCChhHHHHHHH
Q 004279 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPLG-TPTYNTVLHSLVEAQESHRAMEIFK 533 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~l~~ 533 (764)
-....+.|...|...|.+++|..+|... ...|. ...+|.|...|-++|+.++|+..|+
T Consensus 353 --------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 353 --------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred --------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 0111222333444444444444444332 12222 2356777788888888888888888
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004279 534 QMKTCGIPPNA-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611 (764)
Q Consensus 534 ~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 611 (764)
+..+ +.|+. ..|+.+-+.|-..|+.+.|.+.+.+.+.. .|. ...++.|...|-.+|++.+|+.-++... .++
T Consensus 413 ealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klk 486 (966)
T KOG4626|consen 413 EALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLK 486 (966)
T ss_pred HHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccC
Confidence 8776 56664 57788888888888888888888888774 344 3567778888888999999998888877 456
Q ss_pred CCH-HHHHHHHHH
Q 004279 612 HDV-LLYNTILKK 623 (764)
Q Consensus 612 p~~-~~~~~li~~ 623 (764)
||. ..|..++..
T Consensus 487 PDfpdA~cNllh~ 499 (966)
T KOG4626|consen 487 PDFPDAYCNLLHC 499 (966)
T ss_pred CCCchhhhHHHHH
Confidence 763 345555443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-18 Score=170.98 Aligned_cols=362 Identities=11% Similarity=0.030 Sum_probs=275.1
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcch
Q 004279 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 89 (764)
...++.-..+.|++++|. ..++. +...+|......+ .+-..+.+..+.+.....-....+.. +--.++
T Consensus 51 ~l~lah~~yq~gd~~~a~-~h~nm---------v~~~d~t~~~~ll-ll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ 118 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAE-KHCNM---------VGQEDPTNTERLL-LLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEA 118 (966)
T ss_pred HHHHHHHHHhccCHHHHH-HHHhH---------hhccCCCccccee-eehhhhhcccchhhhhhhhhhhhhcc-chHHHH
Confidence 344555566777777777 33332 1222333222222 12222444455555554433333332 345678
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH-HHHH
Q 004279 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF-LGAC 168 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~ 168 (764)
|..+...+...|+...|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+ +.|+.+...+- -..+
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHH
Confidence 9999999999999999999999999985 44677999999999999999999999988764 35665544443 3334
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHH
Q 004279 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
-..|++++|...|.+..+..+ --.+.|+.|-..+-.+|+...|.+.|++.++-.+.-..+|-.|..+|...+.++.|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 457999999999999887632 2356788898899999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-
Q 004279 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS- 327 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~- 327 (764)
.+.+... .+|+. +..|..+...|..+|+.+.|+..|++..+. .|+
T Consensus 274 ~Y~rAl~--lrpn~------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F 319 (966)
T KOG4626|consen 274 CYLRALN--LRPNH------------------------------AVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNF 319 (966)
T ss_pred HHHHHHh--cCCcc------------------------------hhhccceEEEEeccccHHHHHHHHHHHHhc--CCCc
Confidence 9999887 66665 357888888899999999999999999875 566
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHH
Q 004279 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAAC 405 (764)
Q Consensus 328 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~ 405 (764)
...|+.|..++-..|++.+|.+.|.+....... -....+.|...|...|.+++|..+|.....-. -...+|.|...|
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIY 398 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHH
Confidence 468999999999999999999999999887654 44566778888888888888888887766542 344567777777
Q ss_pred hcCCCHHHHHHHHHHHhh
Q 004279 406 DTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 406 ~~~g~~~~a~~l~~~m~~ 423 (764)
-++|++++|+.-|++...
T Consensus 399 kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HhcccHHHHHHHHHHHHh
Confidence 888888888777776654
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.6e-18 Score=181.01 Aligned_cols=296 Identities=13% Similarity=0.043 Sum_probs=177.1
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC--ChhhhHHHHHHHhccCCHHH
Q 004279 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP--ILPVYNSFLGACAKLHSMVH 176 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 176 (764)
..|+++.|.+.|+++.+.+ +.+..++..+...+...|++++|..+++.+.......+ +...+..+...|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4455555555555555543 22334555555555555555555555555543211100 01234555555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCC-----HHhHHHHHHHhhccCCHHHHHHHHH
Q 004279 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS-----IFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
|+.+|+.+.+.. .++..++..+...+...|++++|.+.++.+.+..+.+ ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555555431 2234455555555555555555555555555432211 1234455566677777777777777
Q ss_pred HHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004279 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 252 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 331 (764)
++.+. .|+. ...+..+...+.+.|++++|.++|+++.+.+......++
T Consensus 205 ~al~~--~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 205 KALAA--DPQC------------------------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred HHHhH--CcCC------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 77662 2332 135666777777777777777777777764322223456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcchHHHHHHHhc---
Q 004279 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TNPKPFSAFLAACDT--- 407 (764)
Q Consensus 332 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~--- 407 (764)
+.+..++...|++++|...++.+.+.. |+...+..++..+.+.|++++|..+++++... ++...++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 677777777788888888777777653 44455577777788888888888888766554 255567777777664
Q ss_pred CCCHHHHHHHHHHHhh-ccCCCHH
Q 004279 408 MDKPERAIKIFAKMRQ-KLRPDIR 430 (764)
Q Consensus 408 ~g~~~~a~~l~~~m~~-~~~p~~~ 430 (764)
.|+.++++.++++|.+ +++|++.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 5688999999999998 7776665
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=5.5e-18 Score=178.54 Aligned_cols=296 Identities=10% Similarity=0.014 Sum_probs=247.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc---HHHHHHHHHHHHcc
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN---NKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 135 (764)
...+...|++++|+..|+++.+.+ +.+...+..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344678899999999999999876 44556788899999999999999999999988642221 35678899999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhccChhH
Q 004279 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~ 211 (764)
|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++
T Consensus 121 g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999997532 456778999999999999999999999999887544332 234556677889999999
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004279 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|.+.++++.+..+.+...+..+...+.+.|++++|.++|+++.+. .|+..
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~---------------------------- 248 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL---------------------------- 248 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH----------------------------
Confidence 999999999877777888999999999999999999999999873 23210
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004279 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
..+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++.
T Consensus 249 -~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 249 -SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 147889999999999999999999999886 577777788899999999999999999999876 578888888888
Q ss_pred HHHh---cCCHHHHHHHHHHHhhC
Q 004279 372 ECSK---ALELDLAEALLDQISRC 392 (764)
Q Consensus 372 ~~~~---~g~~~~A~~~~~~~~~~ 392 (764)
.+.. .|+.+++..+++.+...
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH
Confidence 7775 55899999999988754
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=9.7e-15 Score=139.27 Aligned_cols=474 Identities=13% Similarity=0.120 Sum_probs=315.4
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--ccChhHHH-HHHHHHHccCCCCHHhHHHHH
Q 004279 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW--QKNLSAVH-EIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~-~~~~~~~~~~~~~~~~~~~li 234 (764)
+.+=|.|+..- ..|.+..+.-+|+.|++.|+..+...--.|+...+- ..++.-|+ +-|-.|.+....+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 34556666544 368888999999999999888777766666654332 22222221 12222222222333333
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHH
Q 004279 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 314 (764)
+.|++.+ -+|+..++ .+ .+|..+|.++++--+.+.|.+
T Consensus 191 ----K~G~vAd--L~~E~~PK----T~--------------------------------et~s~mI~Gl~K~~~~ERA~~ 228 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETLPK----TD--------------------------------ETVSIMIAGLCKFSSLERARE 228 (625)
T ss_pred ----ccccHHH--HHHhhcCC----Cc--------------------------------hhHHHHHHHHHHHHhHHHHHH
Confidence 4455533 33333322 12 499999999999999999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 004279 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394 (764)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 394 (764)
++++-.....+.+..+||.+|.+-.- ....++..+|....+.||..|+|+++.+..+.|+++.|.+
T Consensus 229 L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------- 294 (625)
T KOG4422|consen 229 LYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------- 294 (625)
T ss_pred HHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH----------
Confidence 99999988888899999999987643 3348899999999999999999999999988888887753
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCC
Q 004279 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473 (764)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (764)
.|++++.+|++ |+.|...+|..+|..+++-+++.+ .....+.+|.+.+....+
T Consensus 295 ------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k--------~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 295 ------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK--------VASSWINDIQNSLTGKTF 348 (625)
T ss_pred ------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh--------hhHHHHHHHHHhhccCcc
Confidence 45677788999 999999999999998888776533 233455667777766666
Q ss_pred CC----cHHHHHHHHHHHhccCcHHHHHHHHHhcC-------CCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004279 474 QH----SHISMKNLLKALGAEGMIRELIQYFCDSK-------TPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 474 ~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~---~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
+| +...|.+-++.|.+..+.+.|.++..-.. ..|+ ..-|..+....++....+..+.+|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 55 34556667788888888888887743221 1222 2245667788888899999999999999888
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---H
Q 004279 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL---L 616 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~ 616 (764)
+-|+..+...++++....+.++-..++|..++..|...+...- ++++..|......|+.. -
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHH
Confidence 8899999999999999999999999999999887644332222 22333333333334322 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhccc-cCchHhhHHHHH
Q 004279 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFE 695 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 695 (764)
+..+..-|+ ..-.+..+..-.+|.+..+ .....+...-.+.+.|+.++|.+++..+.+++-+.+ ......+...++
T Consensus 493 l~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 493 LQVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 333333222 2223334444556665444 444556677788899999999999998865544333 344444555666
Q ss_pred HhhhhccHHHHHHHHHHhhhcchhhHHHHhhhhhhhhhccCCccccc
Q 004279 696 DLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWS 742 (764)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~l~~~~~~~~~~~~~~~~ 742 (764)
+.....++..+...++.+.. ..++...+|.+=. ..|+.|.-.
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~--~n~~~~E~La~RI---~e~f~iNqe 611 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASA--FNLPICEGLAQRI---MEDFAINQE 611 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHH--cCchhhhHHHHHH---HHhcCcCHH
Confidence 66666666666666666533 3444445554310 445555433
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=6e-14 Score=147.71 Aligned_cols=550 Identities=11% Similarity=0.044 Sum_probs=378.7
Q ss_pred HHhcCC--cchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHcc
Q 004279 62 ALCRGE--RSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 62 ~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~ 135 (764)
|...+. .+.|...|....... ++ .....+.++|. +.+++..|+.+|...+... ..||+.+ .+...+.+.
T Consensus 138 ~l~~~~~~~~~A~a~F~~Vl~~s-p~--Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl 212 (1018)
T KOG2002|consen 138 LLLEGDKSMDDADAQFHFVLKQS-PD--NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKL 212 (1018)
T ss_pred hhhcCCccHHHHHHHHHHHHhhC-Cc--chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhc
Confidence 444454 489999999988765 22 34445666666 5689999999999977643 4556644 334556799
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhcc---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004279 136 GYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKL---HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|+.+.|+..|.+..+-+ |+ +.++-.|.-.-... ..+..+..++...-... .-+++..+.|-+.|...|+++.
T Consensus 213 ~~~~~a~~a~~ralqLd---p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLD---PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred cchhhHHHHHHHHHhcC---hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHH
Confidence 99999999999997653 43 22222222222222 44556666666654433 2377788889999999999999
Q ss_pred HHHHHHHHHccCC---CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004279 212 VHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 212 a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
+..+...+.+... .-...|..+.++|...|++++|...|-+..+ ..++.++
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~------------------------ 342 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFV------------------------ 342 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCcc------------------------
Confidence 9999999987532 3344688999999999999999999998887 4444321
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCch
Q 004279 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDR----GLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~ 363 (764)
..+--+...+.+.|+++.+...|+...+. .||. .|...|-..|...+ ..+.|..++....+.-+. |.
T Consensus 343 -----l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~ 414 (1018)
T KOG2002|consen 343 -----LPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DS 414 (1018)
T ss_pred -----ccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cH
Confidence 24446788899999999999999999886 4554 56666666666554 456677777776665433 56
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHh----hCC---CCcchHHHHHHHhcCCCHHHHHHHHHHHhhc----cCCCHH--
Q 004279 364 STIATLSVECSKALELDLAEALLDQIS----RCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK----LRPDIR-- 430 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~p~~~-- 430 (764)
..|-.+...|-.. +...++.++.... ..+ .+...|.+..-+...|.+++|...|...... ..+|..
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 6666666655544 4444455555443 222 6677899999999999999999999987652 334442
Q ss_pred ---hHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhcc-------CcHHHHHHHH
Q 004279 431 ---TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE-------GMIRELIQYF 500 (764)
Q Consensus 431 ---t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~a~~~~ 500 (764)
|...-+..|. +.+.........+..+.+.. ...|++|.+. +...+|...+
T Consensus 494 ~~lt~~YNlarl~------------E~l~~~~~A~e~Yk~Ilkeh--------p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 494 TNLTLKYNLARLL------------EELHDTEVAEEMYKSILKEH--------PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred chhHHHHHHHHHH------------HhhhhhhHHHHHHHHHHHHC--------chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 1111122111 12222222333333333321 1244555444 5667888888
Q ss_pred HhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcc------------CChhHHHH
Q 004279 501 CDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSII------------RCFKSASA 565 (764)
Q Consensus 501 ~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~------------~~~~~a~~ 565 (764)
.+.. ...+...++-+.+.+.+...+..|.+-|...... ...+|..+...|-+.|... +..++|++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 7652 3445667777777888888888888877766554 2236777777777655432 34667899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004279 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 566 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
+|.+..+.. +-|...-|-+.-.++..|++.+|.++|.+..+... -+..+|-.+...|...|++-.|+++|+.....-.
T Consensus 634 ~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998888764 34677778888899999999999999999987652 3456899999999999999999999999887533
Q ss_pred -CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 646 -QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 646 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.-+..+..+|-.++.+.|.+.+|.+.+..-..
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34666777888899999999999988775543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.7e-15 Score=171.05 Aligned_cols=427 Identities=9% Similarity=-0.028 Sum_probs=254.8
Q ss_pred CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004279 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 163 (764)
+.++....-.+......|+.+.|+++|....... +.+...+..+...+.+.|++++|..+|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 3444444445555556666666666666665522 3344456666666666677777776666655432 223344556
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCH
Q 004279 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+...+...|++++|+..++...+..+ .+.. +..+..++...|+.++|...++++.+..|.+...+..+..++...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 66666666777777777666665421 1333 555555666667777777777776666666666666666666677777
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHH-----HccCCH---HHHHHH
Q 004279 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC-----GRTQNS---GLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~a~~~ 315 (764)
+.|++.++.+.+ .|+.. ..........+++.. ...+++ ++|++.
T Consensus 167 e~Al~~l~~~~~---~p~~~-------------------------~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 167 APALGAIDDANL---TPAEK-------------------------RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHHhCCC---CHHHH-------------------------HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 777776665443 11100 000000111222222 222334 778889
Q ss_pred HHHHHHC-CCCCCccc-HH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004279 316 MLQMQSL-GLQPSSHT-YD----GFIRAIVSDRGLRNGMEVLKIMQQNNLK-PQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 316 ~~~m~~~-g~~p~~~t-~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 388 (764)
++.+.+. ...|+... +. ..+.++...|++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9988864 22333321 11 1134556779999999999999987643 332 223357789999999999999999
Q ss_pred HhhCC--C----CcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHH
Q 004279 389 ISRCT--N----PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462 (764)
Q Consensus 389 ~~~~~--~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (764)
+.... + ...+..+..++...|++++|..+++.+....+++...+..
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~---------------------------- 349 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS---------------------------- 349 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC----------------------------
Confidence 87653 1 1234556678899999999999999988722222111100
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 004279 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
....|+ ...+..+...+...|+.++|+++++++....
T Consensus 350 ----------------------------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 350 ----------------------------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred ----------------------------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 001122 1233445566667777777777777776652
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004279 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
+-+...+..+...+...|++++|++.+++..+.. |+ ...+..+...+.+.|++++|+.+++++.+. .|+....
T Consensus 390 -P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~ 463 (765)
T PRK10049 390 -PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGV 463 (765)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 3345566666667777777777777777777643 43 445555566677777777777777777753 4554433
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4.6e-16 Score=171.67 Aligned_cols=326 Identities=12% Similarity=-0.010 Sum_probs=243.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004279 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
..+..+.+.|+++.|+.+++...... +-+...+..++.++...|+++.|.+.++++.+.. +.+...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34677888899999999988888765 3334445555566667889999999999988874 456667888888888999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHH
Q 004279 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+.+ ...+.. +..+...|++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHH
Confidence 9999999998886542 3345577888888888999999999888877654332 223322 33477889999999988
Q ss_pred HHHHccCC-CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhh
Q 004279 217 EDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 217 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
+.+.+..+ ++...+..+..++...|++++|...|+++.+ ..|+.. ..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~------------------------------~~ 248 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGA------------------------------AL 248 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH------------------------------HH
Confidence 88877543 3344455566778888999999999998887 345441 47
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHH
Q 004279 296 FSDVIHACGRTQNSGL----AEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 296 ~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 370 (764)
+..+...+...|++++ |...|++..+. .|+ ...+..+...+...|++++|...++...+.... +...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 7788888888898875 78888888875 344 456777888888899999999999988886544 455666788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 371 VECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
..|.+.|++++|...|+.+.... +...+..+..++...|++++|...|++..+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888999999999998887653 222233455678888999999999988876
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=7.2e-15 Score=163.08 Aligned_cols=423 Identities=12% Similarity=-0.036 Sum_probs=240.2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc
Q 004279 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+......+.+.|++++|+..|+..... .|+...|..+..+|...|++++|.+.+....+..+.+..++..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334555566667777777777666553 455566666666666677777777777776666666666677777777777
Q ss_pred CCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004279 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 241 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
|++++|+..|..+.... +... .....++..+.. ..+........
T Consensus 208 g~~~eA~~~~~~~~~~~--~~~~------------------------------~~~~~~~~~~l~----~~a~~~~~~~l 251 (615)
T TIGR00990 208 GKYADALLDLTASCIID--GFRN------------------------------EQSAQAVERLLK----KFAESKAKEIL 251 (615)
T ss_pred CCHHHHHHHHHHHHHhC--CCcc------------------------------HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 77777776665554311 1100 000111111111 11222222222
Q ss_pred HCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch-hHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC---
Q 004279 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD-STIATLSVE---CSKALELDLAEALLDQISRCT--- 393 (764)
Q Consensus 321 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--- 393 (764)
+.. .++...+..+ ..+...........-+....+. .++. ..+..+... ....+++++|...|+.....+
T Consensus 252 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 252 ETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred hcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 211 1122222222 1121111111111111111110 0000 000111000 122356667777776665431
Q ss_pred --CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHC
Q 004279 394 --NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471 (764)
Q Consensus 394 --~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (764)
....|+.+...+...|++++|+..|++..+ ..|+.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-l~P~~------------------------------------------ 364 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIE-LDPRV------------------------------------------ 364 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCc------------------------------------------
Confidence 334466666667777777777777776655 22321
Q ss_pred CCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-C-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004279 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDS-K-TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549 (764)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 549 (764)
...|..+...+...|++++|...|+.. . .+.+...|..+...+...|++++|+..|++..+.. +.+...+..
T Consensus 365 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 365 -----TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 112223344555666777777766553 1 23345677788888888899999999998888763 234566667
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHH
Q 004279 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV-----L-LYNTILKK 623 (764)
Q Consensus 550 ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~~~~li~~ 623 (764)
+...+.+.|++++|...|+...+.. +.+...|+.+..++...|++++|.+.|++.....-..+. . .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 7778888899999999998887752 335677888888899999999999999988754211111 1 12222223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 624 ACEKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+...|++++|.+++++.... .|+. ..+..+...+...|++++|++.+++...
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34468899999999988763 4544 3566677789999999999998887643
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=8.9e-15 Score=162.36 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=98.8
Q ss_pred HHhccCcHHHHHHHHHhc-CC-CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 004279 486 ALGAEGMIRELIQYFCDS-KT-PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563 (764)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 563 (764)
.+...|++++|...|++. .. +.+...|..+...+.+.|++++|+..|++..+.. +-+...++.+...+...|++++|
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHH
Confidence 344444444444444432 11 2234455566667777788888888888777642 23456777777777888888888
Q ss_pred HHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004279 564 SALVSMMVRDGFYPQTM------TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 637 (764)
...|+...+.....+.. .++.....+...|++++|.+++++..... +.+...+..+...+...|++++|.+.|
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88888877643211111 11222223344688889999888877543 234456888888888999999999988
Q ss_pred HHHHH
Q 004279 638 EQMHQ 642 (764)
Q Consensus 638 ~~m~~ 642 (764)
++..+
T Consensus 566 e~A~~ 570 (615)
T TIGR00990 566 ERAAE 570 (615)
T ss_pred HHHHH
Confidence 88875
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.8e-14 Score=136.16 Aligned_cols=437 Identities=13% Similarity=0.143 Sum_probs=242.4
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHH--hhCCCChhHH-HHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY--CARSPDPLFV-METWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 135 (764)
+......|....+.-+|+.|.+.|++.++..-..|++. |-++.++.-| .+-|-.|...| ..+..+| +.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~ 192 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KS 192 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------cc
Confidence 33456778888888888888888877777665555542 2233344322 22333343333 2233333 44
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004279 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
|++.+ -+|+..+ .+..+|.+||.++|+--..+.|.++|++......+.+..+||.+|.+-.-..+
T Consensus 193 G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~------- 257 (625)
T KOG4422|consen 193 GAVAD--LLFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG------- 257 (625)
T ss_pred ccHHH--HHHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-------
Confidence 55444 3444332 24458888888888888888888888888887778888888888775432211
Q ss_pred HHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhh
Q 004279 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
.++..+|....+.|+. .|
T Consensus 258 -------------------------------K~Lv~EMisqkm~Pnl-------------------------------~T 275 (625)
T KOG4422|consen 258 -------------------------------KKLVAEMISQKMTPNL-------------------------------FT 275 (625)
T ss_pred -------------------------------HHHHHHHHHhhcCCch-------------------------------Hh
Confidence 4455555555555555 45
Q ss_pred HHHHHHHHHccCCHH----HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHH----CCCCC----c
Q 004279 296 FSDVIHACGRTQNSG----LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQ----NNLKP----Q 362 (764)
Q Consensus 296 ~~~li~~~~~~g~~~----~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~~----~ 362 (764)
||+++++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 666666666655543 344556666666666666666666666666665533 3333333322 11222 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----------CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHh
Q 004279 363 DSTIATLSVECSKALELDLAEALLDQISRCT----------NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRT 431 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t 431 (764)
...+...+..|.+..+.+.|.++-.-+.... ...-|..+....|+....+..+..|+.|.- -+-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 2234455556666666666666655444331 112244566666777777777777777776 56677777
Q ss_pred HHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhh
Q 004279 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511 (764)
Q Consensus 432 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 511 (764)
...++++....+.+ +-+..+..+++..|.
T Consensus 436 m~~~lrA~~v~~~~-------------e~ipRiw~D~~~~gh-------------------------------------- 464 (625)
T KOG4422|consen 436 MIHLLRALDVANRL-------------EVIPRIWKDSKEYGH-------------------------------------- 464 (625)
T ss_pred HHHHHHHHhhcCcc-------------hhHHHHHHHHHHhhh--------------------------------------
Confidence 76666655444332 111112222222111
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCChhHHHHH-HHHHHHCCCCCCHHHHHHHHH
Q 004279 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA---TYNIMIDCCSIIRCFKSASAL-VSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~-~~~~~~~g~~p~~~~~~~li~ 587 (764)
.-+..--++++..|......|+.. -+.....-|+ -++.++.+. -.++.+. .......+.+.-
T Consensus 465 ----------t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~ 530 (625)
T KOG4422|consen 465 ----------TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAI 530 (625)
T ss_pred ----------hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHH
Confidence 111122233444444443344322 2222222221 122222222 2334333 344556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004279 588 ILLDYGDFDEALNLLDLVSLEGI-P---HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~-~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 646 (764)
.+.|.|+.++|.+++..+.+++- - |......-+++...+.++...|..+++-|...++.
T Consensus 531 Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 531 LLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 88888888888888888865432 2 33333345666667777888888888888765543
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2.5e-15 Score=165.90 Aligned_cols=294 Identities=10% Similarity=-0.024 Sum_probs=172.7
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+......|++++|+..|+++.... |.+...+..+...+.+.|+++.|++.++++.+.. +.+...+..+...+...|++
T Consensus 83 ~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~ 160 (656)
T PRK15174 83 VISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKE 160 (656)
T ss_pred hhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCh
Confidence 344555677777777777766654 3344455555666666677777777777666653 33455666666666677777
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004279 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
++|...++.+....+ .+...+..+ ..+.+.|++++|...++.+......++...+..+...+...|++++|.+.++.
T Consensus 161 ~eA~~~~~~~~~~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 161 LQAISLARTQAQEVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777766665543321 112222222 23556677777777666665543333333444444556666777777777776
Q ss_pred HHccCCCCHHhHHHHHHHhhccCCHHH----HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004279 219 YIKHYSLSIFSLRKFVWSFTRLRDLKS----AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
+.+..+.+...+..+..++...|++++ |...|++..+ ..|+. ..
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~------------------------------~~ 285 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDN------------------------------VR 285 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCC------------------------------HH
Confidence 666656666666666666666666664 5666666665 34443 13
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 373 (764)
.+..+...+.+.|++++|...+++..+.. |+ ...+..+..++...|++++|...|+.+.+.+.. +...+..+..++
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al 362 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 66666666666777777777776666542 33 334445556666667777777777666654322 112233344556
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 004279 374 SKALELDLAEALLDQISRC 392 (764)
Q Consensus 374 ~~~g~~~~A~~~~~~~~~~ 392 (764)
...|+.++|...|+.....
T Consensus 363 ~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 6667777777776666544
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=2.9e-14 Score=161.05 Aligned_cols=189 Identities=10% Similarity=0.006 Sum_probs=140.8
Q ss_pred HhccCcHHHHHHHHHhcCCCCC-hh--hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCh
Q 004279 487 LGAEGMIRELIQYFCDSKTPLG-TP--TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP---NAATYNIMIDCCSIIRCF 560 (764)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~ 560 (764)
+...|++++|...|+.+....+ .. .-..+...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3456888999999988643321 11 11224668889999999999999987653111 134456666778899999
Q ss_pred hHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004279 561 KSASALVSMMVRDGF-----------YPQ---TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 561 ~~a~~~~~~~~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999887521 123 2345567788889999999999999998642 4467788899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004279 627 KGRIDVIEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
.|+.++|++.+++..+ ..|+.. .+......+...|++++|..+++.+..+
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999985 567754 4444555888899999999999988764
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2e-13 Score=150.97 Aligned_cols=452 Identities=10% Similarity=0.016 Sum_probs=305.4
Q ss_pred HHHHhcCCcchHHHHHHHhhhccCCCCc--chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004279 60 VDALCRGERSRASHLLLNLGHAHHSLGA--DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
....+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.+.|+..+++.... .+.+......+...|...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 34789999999999999998876 443 234 8888888889999999999998822 12233344444668889999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
+++|+++|+++.+.++- +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|.+.++
T Consensus 118 yd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 118 WDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999876533 3456678888999999999999999999886 5666666444444444566656999999
Q ss_pred HHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHH
Q 004279 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (764)
++.+..|.+...+..+..+..+.|-...|.++...-+ +.+.... .+.+......
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~--------------------~~~l~~~~~a 247 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEH--------------------YRQLERDAAA 247 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHH--------------------HHHHHHHHHH
Confidence 9999999999999999999999999999987766533 2211100 0000000011
Q ss_pred HHHHHH-----HccCCH---HHHHHHHHHHHHC-CCCCCccc-----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch
Q 004279 298 DVIHAC-----GRTQNS---GLAEQLMLQMQSL-GLQPSSHT-----YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 298 ~li~~~-----~~~g~~---~~a~~~~~~m~~~-g~~p~~~t-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 363 (764)
.+++.- ....++ +.|+.-++.+... +-.|.... ..--+-++...++..++.+.|+.+...+.+...
T Consensus 248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 111110 011223 4555555555542 22243222 223456778899999999999999998876556
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCC-HHhHHH
Q 004279 364 STIATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD-IRTYEL 434 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~-~~t~~~ 434 (764)
.+-.++.++|...+++++|+.++..+.... +......|..+|...+++++|..+++++.+ ..|- ...|
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~-~~p~~~~~~-- 404 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE-QTPYQVGVY-- 404 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCcEEecc--
Confidence 788899999999999999999999986532 122246788999999999999999999986 2231 0000
Q ss_pred HHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCCh-hhHH
Q 004279 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT-PTYN 513 (764)
Q Consensus 435 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 513 (764)
.... ..+.||- ..+.
T Consensus 405 -----~~~~-----------------------------------------------------------~~pn~d~~~~~~ 420 (822)
T PRK14574 405 -----GLPG-----------------------------------------------------------KEPNDDWIEGQT 420 (822)
T ss_pred -----CCCC-----------------------------------------------------------CCCCccHHHHHH
Confidence 0000 0012221 1333
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004279 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 593 (764)
.++..+...|+..+|++.++++.... +-|......+-..+...|.+.+|+..++...... +-+..+....+..+...|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhh
Confidence 44566677778888888888776653 4466667777777777778888888776655542 223455566667777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH
Q 004279 594 DFDEALNLLDLVSLEGIPHDVLL 616 (764)
Q Consensus 594 ~~~~A~~~~~~m~~~~~~p~~~~ 616 (764)
++++|..+.+.+.+. .|+...
T Consensus 499 e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 499 EWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred hHHHHHHHHHHHHhh--CCCchh
Confidence 888887777776643 454443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=4.4e-13 Score=148.25 Aligned_cols=436 Identities=10% Similarity=0.041 Sum_probs=262.8
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCCh--hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH---HHHHHHh
Q 004279 131 ALCKGGYLEEASNLIYFLGERYGIYPIL--PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE---LLKLAVW 205 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~ 205 (764)
...+.|+++.|+..|++..+.+ |+. ..+ .++..+...|+.++|+..+++.. .|+...+.. +...+..
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence 4567788888888888776543 443 133 67777777788888888887776 233222222 2335566
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004279 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.|++++|.++++.+.+..+.++..+..++..+...++.++|++.++++.+ ..|+.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~----------------------- 169 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTV----------------------- 169 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcch-----------------------
Confidence 67777777777777776666666666666677777777777777777665 23332
Q ss_pred ccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchh
Q 004279 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 364 (764)
..+-.++..+...++..+|++.++++.+.. |+ ...+..++.++.+.|-...|.++..+-... +.+ .
T Consensus 170 --------~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~--~ 236 (822)
T PRK14574 170 --------QNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA--E 236 (822)
T ss_pred --------HHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH--H
Confidence 233333333333444545777777776653 43 334455566666666666666544432110 111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCH---HHHHHHHHHHhh--ccCCCHHh-HHHHHHH
Q 004279 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQ--KLRPDIRT-YELLFSL 438 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~--~~~p~~~t-~~~ll~~ 438 (764)
....| +.+.|-+..+..... . -....++ +.|+.-++.+.. +-.|.... |..
T Consensus 237 ~~~~l--------~~~~~a~~vr~a~~~--~---------~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~---- 293 (822)
T PRK14574 237 HYRQL--------ERDAAAEQVRMAVLP--T---------RSETERFDIADKALADYQNLLTRWGKDPEAQADYQR---- 293 (822)
T ss_pred HHHHH--------HHHHHHHHHhhcccc--c---------ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH----
Confidence 11000 001111111110000 0 0011122 333333444333 21122111 100
Q ss_pred hcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCC-Chh--hHHHH
Q 004279 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-GTP--TYNTV 515 (764)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~l 515 (764)
...-.+-++.+.+++.++++.++.+.... .+. +--.+
T Consensus 294 ----------------------------------------~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 294 ----------------------------------------ARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ----------------------------------------HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00113345677888889998888875433 223 44567
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC-----------CCCH
Q 004279 516 LHSLVEAQESHRAMEIFKQMKTCG-----IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-----------YPQT 579 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----------~p~~ 579 (764)
..+|...+++++|+.+|++..... ..++......|.-++...+++++|..+++.+.+... .|+.
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 888999999999999999986643 122344457788899999999999999999987311 1221
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-hHHHH
Q 004279 580 ---MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS-TCHFV 655 (764)
Q Consensus 580 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l 655 (764)
..+..++..+.-.|+..+|++.++++.... +-|......+...+...|++.+|++.++.... +.|+.. +....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~ 490 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQ 490 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHH
Confidence 223456777888999999999999997543 45778888999999999999999999977764 567654 44445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHh
Q 004279 656 FSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 656 l~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
..++...|+|.+|..+.+.+..+
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh
Confidence 56778889999999988877654
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.72 E-value=3.4e-14 Score=147.54 Aligned_cols=556 Identities=12% Similarity=0.048 Sum_probs=285.6
Q ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004279 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..++..+...|+.||..+|.++|.-||..|+++.|- +|..|.- ...+.+...++.++.++.+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC--------
Confidence 455666666666677667777777777777766666 6666642 345555666666666666666665554
Q ss_pred cCCCCChhhHHHHHHHHHhccChhH---HHHHHHHHHccC------CC-------------CHHhHHHHHHHhhccCCHH
Q 004279 187 RMVGKNEVTYTELLKLAVWQKNLSA---VHEIWEDYIKHY------SL-------------SIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~------~~-------------~~~~~~~li~~~~~~g~~~ 244 (764)
.|...||..|+.+|...||+.. ..+.+..+...+ .+ ....-.+++....-.|.++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 4566666666666666666543 222122221110 00 0111112222333344444
Q ss_pred HHHHHHHHHH------------Hhhhcccchhcccc--cccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHH
Q 004279 245 SAYETLQHMV------------ALAMMGKLYINRTS--EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 245 ~A~~~~~~m~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 310 (764)
.+++++..++ +..+.++.++.+.+ |..+++ ... ..+|.+++.+-..+|+.+
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~--------------s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT--------------SETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC--------------hHHHHHHHHHHHhcCchh
Confidence 4444443322 22233333333222 222222 111 269999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004279 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 390 (764)
.|..++.+|.+.|++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....+....+.-.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h 298 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH 298 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh
Confidence 999999999999999999998888866 88999999999999999999999999977777766554322211110000
Q ss_pred hCCCCcchHHHHHHHhcCCCHHH-----HHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhh---------
Q 004279 391 RCTNPKPFSAFLAACDTMDKPER-----AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV--------- 455 (764)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~-----a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--------- 455 (764)
.- ....+..+..+.....+.+. ....+.+-.- |+.-....|.......- .|.-.+...+...+
T Consensus 299 g~-tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 299 GF-TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hh-hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCc
Confidence 00 11111111111111111110 0111111111 11111111111111100 11110000000000
Q ss_pred ---h-hHHHHHHHHHHHHHCCCCCcHHHHH--HHHHHHhccCcHHHHHHH------------HHhc---------CC---
Q 004279 456 ---D-SAKRINAIEMDMARNNIQHSHISMK--NLLKALGAEGMIRELIQY------------FCDS---------KT--- 505 (764)
Q Consensus 456 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~------------~~~~---------~~--- 505 (764)
+ .......++....... ....++ ..++-........+..+. +... ..
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~---~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~ 453 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHI---CSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPL 453 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchh
Confidence 0 0000111111111100 000111 000000001111111111 1100 00
Q ss_pred --CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC--CCCCCHHH
Q 004279 506 --PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTMT 581 (764)
Q Consensus 506 --~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~p~~~~ 581 (764)
.+-...-+.++..++..-+..+++..-+.....-+ | ..|..||+-++.....+.|..+.++.... .+..|..-
T Consensus 454 ~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 454 IAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 00011234555566666566666544333332211 1 56888888888888888888888887643 34556667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004279 582 YTALIKILLDYGDFDEALNLLDLVSLEG-IPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 659 (764)
+..+.+.+.+.+...++..+++++.+.- ..|+ ..++--++++....|+.+...++++-+...|+.-+ .-++...
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vh 606 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVH 606 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEE
Confidence 8888888888888888888888887631 2232 34555667777788888888888888887776552 2345566
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHH
Q 004279 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRIL 710 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (764)
.+.++...|+++.+....+ . ...+.....+-.++..+..+....++
T Consensus 607 Lrkdd~s~a~ea~e~~~qk-y----k~~P~~~e~lcrlv~ke~td~~qk~m 652 (1088)
T KOG4318|consen 607 LRKDDQSAAQEAPEPEEQK-Y----KPYPKDLEGLCRLVYKETTDSPQKTM 652 (1088)
T ss_pred eeccchhhhhhcchHHHHH-h----cCChHHHHHHHHHHHhhccccHHHHH
Confidence 6778888888877755432 1 13333344444445433333333333
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=2.4e-11 Score=127.67 Aligned_cols=592 Identities=10% Similarity=0.027 Sum_probs=358.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004279 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
...+......+-..|+.++|.+++.++++.. +.....|..|...|-+.|+...+...+-.....+ +.|...|..+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444444444555699999999999999887 5677889999999999999999988876665554 5577899999999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH----HHHHHHhcc
Q 004279 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE----LLKLAVWQK 207 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~ 207 (764)
..+.|.++.|.-.|.+..+.. +++...+-.=...|-+.|+...|..-|.++.+..+..|..-+.. ++..+...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998654 34544444456678889999999999999998754333333333 455666778
Q ss_pred ChhHHHHHHHHHHc--cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004279 208 NLSAVHEIWEDYIK--HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 208 ~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
+-+.|.+.++.... ....+...++.++..|.+...++.|......+......+|+.-. ...+.+...+.+.-.
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~-----~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW-----DTDERRREEPNALCE 369 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh-----hhhhhcccccccccc
Confidence 78999998888876 35666778889999999999999999988888764444433110 000000000000000
Q ss_pred cc---chhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004279 286 LP---VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP--SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 286 ~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
.+ ..++ .. --++-++......+....+..-..+..+.| +...|.-+..++...|.+.+|..+|..+...-..
T Consensus 370 ~~~~~s~~l--~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 370 VGKELSYDL--RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred CCCCCCccc--hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 00 0011 01 123344445555555555556666665333 4456888899999999999999999999987666
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHH
Q 004279 361 PQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL 438 (764)
Q Consensus 361 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~ 438 (764)
-+..+|-.+..+|...|..+.|...+..+.... +...--+|-..+.+.|+.++|.+.+..|.. ||..+- .+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~---~D~~~~----e~ 519 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN---PDGRNA----EA 519 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC---CCccch----hh
Confidence 677889999999999999999999999987762 444455677788999999999999998753 332210 00
Q ss_pred hcCCCCchhhchhhhhhhhHHHHHHHHHHHH-HCCCC-CcHHHHHHHHHHHhccCcH----HHHHHHHHhc-CCCCChhh
Q 004279 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMA-RNNIQ-HSHISMKNLLKALGAEGMI----RELIQYFCDS-KTPLGTPT 511 (764)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~-~~~~~~~~ 511 (764)
|+.. . ..++..-...+. +.|-. --..+-..|++.+.+...+ .++...-... ........
T Consensus 520 ~a~~----~----------e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 520 CAWE----P----------ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSEL 585 (895)
T ss_pred cccc----H----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchh
Confidence 0000 0 000000000000 00000 0011112233322221111 0000000000 01122223
Q ss_pred HHHHHHHHHHcCChhHHHH------HHHHHHhCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHCCC--CCCH--
Q 004279 512 YNTVLHSLVEAQESHRAME------IFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGF--YPQT-- 579 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~------l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~p~~-- 579 (764)
.-.++.+-.+.++...... .+.--...|+.-+. ..+.-++.++++.+++++|+.+...+.+... .++.
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~ 665 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIR 665 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHH
Confidence 3334444444443222111 11111222333232 2456677788899999999999888876522 2222
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004279 580 -MTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHD---VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654 (764)
Q Consensus 580 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 654 (764)
..-...+.+.+..+++..|.+.++.|... +...+ ...|+...+...+.++-.--.+++..+.. ..|+...+-.
T Consensus 666 k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~ 743 (895)
T KOG2076|consen 666 KELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLA 743 (895)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCccee
Confidence 22345666777889999999999988753 22222 23566566666666654444444444432 2333322222
Q ss_pred HH--HHHHhcCChHHHHHHHHHHHHh
Q 004279 655 VF--SGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 655 ll--~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
++ ..+...+.+..|+..+-.....
T Consensus 744 ~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 744 LIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred eeechhHhhccchHHHHHHHHHHHHh
Confidence 22 2456678888888766655443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.3e-12 Score=125.73 Aligned_cols=184 Identities=16% Similarity=0.119 Sum_probs=145.2
Q ss_pred HhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 004279 487 LGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564 (764)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 564 (764)
+-+.|++++|++.|-+.. ...+....-.+.+.|-...+..+|++++.+.... ++.|+.....|...|-+.|+-.+|.
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhh
Confidence 456678888888876541 1234555666777888889999999999776554 5567788899999999999999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC
Q 004279 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~ 643 (764)
+.+-+--+. ++-+..+...|..-|....-+++|+.+|++.. -++|+..-|..+|..|. +.|++.+|.++++...+
T Consensus 613 q~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr- 688 (840)
T KOG2003|consen 613 QCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR- 688 (840)
T ss_pred hhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 887554443 56678888888888999999999999999875 56999999999988775 68999999999999886
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004279 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 644 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 676 (764)
.++-|..+...|++.+...|. .++.++-+++.
T Consensus 689 kfpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 689 KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred hCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 577788898899998888885 34555555554
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.6e-10 Score=121.65 Aligned_cols=616 Identities=10% Similarity=-0.028 Sum_probs=367.5
Q ss_pred hhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCc
Q 004279 8 TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA 87 (764)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 87 (764)
-.+...+..+.-.|++++|. .++.++ ++.+|.. ...|..+...|-..|+.+++...|-..-..+ +-|.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~-~i~~Ev---------Ikqdp~~-~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~ 207 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAE-EILMEV---------IKQDPRN-PIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDY 207 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHH-HHHHHH---------HHhCccc-hhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCCh
Confidence 34555666666679999999 444433 4555553 3445556677889999999998876665544 4556
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhh----HH
Q 004279 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY----NS 163 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~ 163 (764)
..|..+.....+.|+++.|.-.|.+.++.. +++...+-.-...|-+.|+...|.+-|.++.+..+ +.|..-. -.
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRR 285 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHH
Confidence 778888888888999999999999999986 45544444557788999999999999999876543 2222223 33
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc---------------------
Q 004279 164 FLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--------------------- 221 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------- 221 (764)
.+..+...++.+.|++.++..... +-..+...++.+...+.+...++.+.........
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 455667778889999999888763 2233445667777778888888887776655544
Q ss_pred -------cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004279 222 -------HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 222 -------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
...++..+ -.++-++......+....+..-..+....|...+ .
T Consensus 366 ~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~-----------------------------d 415 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDV-----------------------------D 415 (895)
T ss_pred ccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhH-----------------------------H
Confidence 11222223 1233334444455555555555565555444421 4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
.|.-+..+|...|++..|+.+|..+...-.--+...|--+.+++-..|..+.|.+.|......... +...--+|...+-
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHH
Confidence 788899999999999999999999988755556667888889999999999999999999886433 4444557788899
Q ss_pred hcCCHHHHHHHHHHHhhCC----CCc-------chHHHHHHHhcCCCHHHHHHHHHHHhh-c-----cCCCH--------
Q 004279 375 KALELDLAEALLDQISRCT----NPK-------PFSAFLAACDTMDKPERAIKIFAKMRQ-K-----LRPDI-------- 429 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~~----~~~-------~~~~li~~~~~~g~~~~a~~l~~~m~~-~-----~~p~~-------- 429 (764)
+.|+.++|.+.+..+...+ ... .--.....+.+.|+.++-+..-..|.. . +-|+.
T Consensus 495 ~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~ 574 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAI 574 (895)
T ss_pred hcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhh
Confidence 9999999999999865433 111 223345667788888886666555543 1 11211
Q ss_pred ---------HhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHhccCcHHHHHH
Q 004279 430 ---------RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH--ISMKNLLKALGAEGMIRELIQ 498 (764)
Q Consensus 430 ---------~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~ 498 (764)
.+...++.+..+.++....... +.. ..........|+..+. ..+..++..+++.+.+++|..
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~---l~d----~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 575 AGTTSKRYSELLKQIIRAREKATDDNVMEKA---LSD----GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred ccccccccchhHHHHHHHHhccCchHHhhhc---ccc----hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1111111111111111000000 000 0111112223333332 234568889999999999999
Q ss_pred HHHhcCC-----CCCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhC-CC--CCCH-HHHHHHHHHHHccCChhHHHHH
Q 004279 499 YFCDSKT-----PLGT---PTYNTVLHSLVEAQESHRAMEIFKQMKTC-GI--PPNA-ATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 499 ~~~~~~~-----~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g~--~p~~-~t~~~ll~~~~~~~~~~~a~~~ 566 (764)
+...+.. .++. ..-...+.+....+++..|...++.|... +. .|.. ..|+..++...+.++-.--.++
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765422 1111 13345667778889999999999998765 11 1222 2344455555544433222233
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH----------HcCCHHHHHH
Q 004279 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK-AC----------EKGRIDVIEF 635 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~----------~~g~~~~a~~ 635 (764)
+..+......-++..+......+..++.+..|+..+-+.... .||....+.++.. +. ++-..-.+..
T Consensus 728 ~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~a 805 (895)
T KOG2076|consen 728 IMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFA 805 (895)
T ss_pred HHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 322222111111111112222344566777777766555432 4553333332211 11 1111234455
Q ss_pred HHHHHHHCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 636 IIEQMHQNKVQ-PDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 636 ~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
++.+..+.... --...++-+-++|-..|-..-|..++++...
T Consensus 806 fL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 806 FLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 55555442211 1233455566677777777777777776543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=1.8e-09 Score=109.32 Aligned_cols=523 Identities=14% Similarity=0.056 Sum_probs=323.3
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHH
Q 004279 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 182 (764)
...=.+++++.++. ++.++..|...+ .....+.|+-++.+..+- ++.+. -|.-+|++..-++.|.++++
T Consensus 362 ~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec--cp~s~----dLwlAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 362 TKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC--CPQSM----DLWLALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh--ccchH----HHHHHHHHHHHHHHHHHHHH
Confidence 33344555555554 344555554433 234445566666666542 12222 23344555666667777777
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-----cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004279 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 183 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 257 (764)
..++. ++.+...|.+....=-..|+.+....+.+.-.. |...+...|..=...|-..|..-.+..+.......|
T Consensus 431 kaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig 509 (913)
T KOG0495|consen 431 KAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG 509 (913)
T ss_pred HHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc
Confidence 66664 444555665555555566666666666655543 355555566666666666666666666666666666
Q ss_pred hcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHH
Q 004279 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIR 336 (764)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~ 336 (764)
+...+. ..+|+.-...|.+.+.++-|..+|....+- -|. ...|..+..
T Consensus 510 vEeed~-----------------------------~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~ 558 (913)
T KOG0495|consen 510 VEEEDR-----------------------------KSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAM 558 (913)
T ss_pred cccchh-----------------------------HhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHH
Confidence 554432 136777777777777777777777666653 233 333444444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHH
Q 004279 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERA 414 (764)
Q Consensus 337 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a 414 (764)
.--..|..++...+|++....-.+ ....+-.....+...|++..|..++.+.-+.. +...|-+-+..-..+..++.|
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHH
Confidence 444556666666777776665443 34445555556666677777777776665542 445566666666777777777
Q ss_pred HHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHH
Q 004279 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494 (764)
Q Consensus 415 ~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 494 (764)
..+|.+... ..|+...|.--++.-- .++..+....+.+...+. ++.-...|-.+-..+-+.++++
T Consensus 638 R~llakar~-~sgTeRv~mKs~~~er-------------~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 638 RDLLAKARS-ISGTERVWMKSANLER-------------YLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHHHhc-cCCcchhhHHHhHHHH-------------HhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 777766665 2334333322211111 111222222222222221 1122334455666677778888
Q ss_pred HHHHHHHhc-CCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 004279 495 ELIQYFCDS-KTPLG-TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572 (764)
Q Consensus 495 ~a~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 572 (764)
.|.+.+... ..-|+ +..|-.+...=-+.|.+-+|..++++.+-.+ +-|...|...|..=.+.|+.+.|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888887654 23344 5578888777778889999999999988776 34778888999999999999999999877776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-h
Q 004279 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS-T 651 (764)
Q Consensus 573 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~ 651 (764)
. ++.+...|.--|....+.++-....+.+++ +.-|+...-.+...+.....++.|.+.|++.+. ..||.. +
T Consensus 782 e-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~ 853 (913)
T KOG0495|consen 782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDA 853 (913)
T ss_pred h-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchH
Confidence 5 455677888888888887776666655554 356778888888888888999999999999985 556654 6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHH
Q 004279 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694 (764)
Q Consensus 652 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (764)
|..+...+.+.|.-+.-.+++.......-. -+..|..+..-+
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~EP~-hG~~W~avSK~i 895 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETAEPT-HGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCC-CCcHHHHHhhhH
Confidence 666778889999888888888865543211 124565554444
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=1.6e-11 Score=128.10 Aligned_cols=562 Identities=14% Similarity=0.066 Sum_probs=294.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004279 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 131 (764)
..++.++|..|+..|+.+.|- +|.-|.-...+.....|+.++.+....++.+.+. .|...+|+.|..+
T Consensus 25 RvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 25 RVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKA 92 (1088)
T ss_pred hhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHH
Confidence 366777777777777777777 7777776666666677777777777777766554 5677788888888
Q ss_pred HHccCCHHH---HHHHHHHHhhh---cCCC-CChhh-------------hHHHHHHHhccCCHHHHHHHHHHHHhcC-CC
Q 004279 132 LCKGGYLEE---ASNLIYFLGER---YGIY-PILPV-------------YNSFLGACAKLHSMVHANLCLDLMDSRM-VG 190 (764)
Q Consensus 132 ~~~~g~~~~---A~~~~~~~~~~---~~~~-~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 190 (764)
|...||+.. ..+.+..+.+. .|+- |.... -...+.-..-.|-++.+++++..++... ..
T Consensus 93 yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~ 172 (1088)
T KOG4318|consen 93 YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA 172 (1088)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence 888887543 33322222111 1110 00000 1112222333344444455444433221 11
Q ss_pred CChhhHHHHHHHHHhccChhHHHHHHHHHHcc-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccc
Q 004279 191 KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269 (764)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 269 (764)
|..+ .|+-+.. +....+++.....+. ..|++.+|..++..-...|+.+.|..++..|.+.|+.-+.
T Consensus 173 p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~------- 239 (1088)
T KOG4318|consen 173 PFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA------- 239 (1088)
T ss_pred hHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc-------
Confidence 1111 1222222 223444555555543 3699999999999999999999999999999998877655
Q ss_pred ccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 004279 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349 (764)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 349 (764)
+-|-.|+-+ .++...+..+++.|.+.|+.|+..|+..-+..+.+.|....+..
T Consensus 240 ------------------------HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 240 ------------------------HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred ------------------------ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 223344433 78888899999999999999999999887777766443211110
Q ss_pred -----------HHHHHHH-------------------------CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004279 350 -----------VLKIMQQ-------------------------NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 350 -----------~~~~m~~-------------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 393 (764)
++..|.. .|+.....++. +..-....|.-+..+++-..+....
T Consensus 293 ~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 293 GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCc
Confidence 1111110 12221111111 1111222455555555555443321
Q ss_pred ------CCcchHHHHHHHhcCCC----------------------HHHHHHHHHHHhhccCCCHHhHH-------HHHHH
Q 004279 394 ------NPKPFSAFLAACDTMDK----------------------PERAIKIFAKMRQKLRPDIRTYE-------LLFSL 438 (764)
Q Consensus 394 ------~~~~~~~li~~~~~~g~----------------------~~~a~~l~~~m~~~~~p~~~t~~-------~ll~~ 438 (764)
++..|..++.-|.+.-+ ..+..++.. ...|+..--. -+++.
T Consensus 372 ~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~----~lrkns~lr~lv~Lss~Eler~ 447 (1088)
T KOG4318|consen 372 LRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE----NLRKNSFLRQLVGLSSTELERS 447 (1088)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH----HhCcchHHHHHhhhhHHHHhcc
Confidence 33334444444433211 111111111 1122221110 00000
Q ss_pred hcCCCC-chhhchhhh----hhhhHHHHHHHHH--HHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCC-----
Q 004279 439 FGNVNA-PYEEGNMFS----QVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP----- 506 (764)
Q Consensus 439 ~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 506 (764)
.-.... .....+..+ .+-.......+.+ .+.+.-. -...|..||+-+.....++.|..+.++...+
T Consensus 448 he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~ 525 (1088)
T KOG4318|consen 448 HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIH 525 (1088)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhh
Confidence 000000 000000000 0000000000110 0111111 1145778899999999999999988776322
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC---------
Q 004279 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPN-AATYNIMIDCCSIIRCFKSASALVSMMVRDGF--------- 575 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--------- 575 (764)
.|..-+..+.+.+.+.+...++..++++|.+.-. .|+ ..++-.+++..+..|+.+.-.++++-+...|+
T Consensus 526 Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~v 605 (1088)
T KOG4318|consen 526 LDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMV 605 (1088)
T ss_pred cccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEE
Confidence 3445788889999999999999999999987422 222 34566677777777887777777766665543
Q ss_pred ---------------------CCCHHHHHHHHHH---------------------HHhcCCHHHHHHHHHHH---HHCC-
Q 004279 576 ---------------------YPQTMTYTALIKI---------------------LLDYGDFDEALNLLDLV---SLEG- 609 (764)
Q Consensus 576 ---------------------~p~~~~~~~li~~---------------------~~~~g~~~~A~~~~~~m---~~~~- 609 (764)
+|.+.....+.+. |.++|+..+|.++.+.= .+.+
T Consensus 606 hLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~R 685 (1088)
T KOG4318|consen 606 HLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGR 685 (1088)
T ss_pred EeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCC
Confidence 2222222222222 33333333333333210 0000
Q ss_pred --------CCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 004279 610 --------IPH---------DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 610 --------~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
+.| +.....-|+..|.+.|++++|..+|.++. +.|+..+.-.|.+.+.+...-...-+++
T Consensus 686 Dr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q 762 (1088)
T KOG4318|consen 686 DRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQ 762 (1088)
T ss_pred ccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHH
Confidence 000 00112236667788888888888888876 7777777777777777665544444444
Q ss_pred HHH
Q 004279 673 QVL 675 (764)
Q Consensus 673 ~~~ 675 (764)
.+.
T Consensus 763 ~e~ 765 (1088)
T KOG4318|consen 763 AET 765 (1088)
T ss_pred HHH
Confidence 443
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=6.3e-10 Score=112.61 Aligned_cols=511 Identities=10% Similarity=0.024 Sum_probs=370.1
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004279 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY 146 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 146 (764)
+...=.+++++..+.- |+... |-++.....+.+.|+-++++..+. ++.+...| .+|++..-++.|..+++
T Consensus 361 ~~~~K~RVlRKALe~i--P~sv~---LWKaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHI--PRSVR---LWKAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHHhC--CchHH---HHHHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHH
Confidence 3344456677766653 44332 334444556777788888888876 34444443 45666777899999999
Q ss_pred HHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH----HHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc-
Q 004279 147 FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL----MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK- 221 (764)
Q Consensus 147 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~- 221 (764)
...+ .++-+..+|-+-...--++|+.+...+++.+ +...|+..+..-|-.=...|-..|..-.+..+......
T Consensus 431 kaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 431 KARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 8865 4555666776666666778899988888765 44568888888887777778888888888887777765
Q ss_pred c--CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHH
Q 004279 222 H--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299 (764)
Q Consensus 222 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (764)
+ ...-..+|+.-...|.+.+.++-|..+|....+ +.|.. ...|...
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k------------------------------~slWlra 556 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCK------------------------------KSLWLRA 556 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccch------------------------------hHHHHHH
Confidence 2 233456888888889999999999999999887 55554 2578777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCC
Q 004279 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378 (764)
Q Consensus 300 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 378 (764)
+..--..|..+....+|++.... .|-... |-....-.-..|+...|..++....+.+.. +...+-+-+..-....+
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e 633 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcccc
Confidence 77777788999999999998876 344443 433445566789999999999998887665 67778888888899999
Q ss_pred HHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhh
Q 004279 379 LDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457 (764)
Q Consensus 379 ~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 457 (764)
++.|..+|.+..... +...|.--+..---.+..++|++++++..+ .-|+..-+-.++ |.+++++..
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk-~fp~f~Kl~lml------------GQi~e~~~~ 700 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK-SFPDFHKLWLML------------GQIEEQMEN 700 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH-hCCchHHHHHHH------------hHHHHHHHH
Confidence 999999999887664 777777777777777889999999987776 456655554443 233333333
Q ss_pred HHHHHHHHHHHHHCC---CCCcHHHHHHHHHHHhccCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 004279 458 AKRINAIEMDMARNN---IQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIF 532 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~ 532 (764)
.+..... ...| ++.....|-.|...--+.|.+..|..+|+.. ..+.+...|-..|..=.+.|+.+.|..+.
T Consensus 701 ie~aR~a----Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 701 IEMAREA----YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHH----HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 3333222 2223 3344666777888788889999999999875 45667889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004279 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612 (764)
Q Consensus 533 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 612 (764)
.+..+. ++-+...|.--|....+.++-.... +.+.+ +.-|+...-.+...|-....++.|.+.|.+....+ +-
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTks~---DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d 849 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI---DALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PD 849 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchHHH---HHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 888775 4555666777777666666643333 33333 45577777788888888899999999999998543 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004279 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 613 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+-.+|.-+...+.++|.-+.-.+++..... ..|...
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG 885 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHG 885 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCC
Confidence 346888899999999999998999998874 456544
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.9e-08 Score=98.24 Aligned_cols=454 Identities=10% Similarity=0.088 Sum_probs=261.7
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHHHHHhccCCHHHH
Q 004279 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNSFLGACAKLHSMVHA 177 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 177 (764)
..++...|+.+|+..+.-+ ..+...|-..+..=.++..+..|..+|++.... -|.+ ..|-.-+..--..|++..|
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHH
Confidence 3455666777777766654 345556666666666666777777777766432 1222 2333333333445677777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004279 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 257 (764)
.++|+.-.+ ..|+...|.+.|+.=.+.+.++.|..+|+..+-. .|++..|-.....-.++|....|..+|+...+.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~- 236 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEF- 236 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-
Confidence 777776665 3677777777777767777777777777766543 366777766666666777777777777766651
Q ss_pred hcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHH
Q 004279 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGF 334 (764)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~l 334 (764)
-.++... ...|.+...-=.++..++.|.-+|+-.++. -|... .|...
T Consensus 237 -~~~d~~~---------------------------e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 237 -LGDDEEA---------------------------EILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKY 286 (677)
T ss_pred -hhhHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHH
Confidence 1111000 023444444444455556666666555543 22221 11111
Q ss_pred HHHHHhcCChhHHHHH--------HHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----cchHHHH
Q 004279 335 IRAIVSDRGLRNGMEV--------LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP----KPFSAFL 402 (764)
Q Consensus 335 i~~~~~~~~~~~a~~~--------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~li 402 (764)
..-=-+-|+.....+. ++.+.+.+.. |-.++-..++.-...|+.+...++|+.......+ ..|.-.|
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYI 365 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHH
Confidence 1111122322221111 2222222211 3333334444444444444444444444332100 1122111
Q ss_pred HHH--------hcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004279 403 AAC--------DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 403 ~~~--------~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
... ....+++.+.++|+...+ -++
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~------------------------------------------------lIP 397 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLD------------------------------------------------LIP 397 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------------------------------------hcC
Confidence 111 112333333444433333 233
Q ss_pred CcHHHHHHHHHHH----hccCcHHHHHHHHHh-cCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004279 475 HSHISMKNLLKAL----GAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549 (764)
Q Consensus 475 ~~~~~~~~l~~~~----~~~g~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 549 (764)
...+++..+--+| .++.++..|.+++.. ++..|-..++-..|..=.+.++++.+..+|++..+-+ +-|..++..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 3344444433333 366788899999865 4667888899999999999999999999999999975 336677777
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 004279 550 MIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC--- 625 (764)
Q Consensus 550 ll~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--- 625 (764)
....=...|+.+.|..+|...+... +......|-+.|+.=...|.++.|..+++++++. .+...+|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccc
Confidence 7666677899999999999998763 3334556777777778899999999999999864 445557776654332
Q ss_pred --HcC-----------CHHHHHHHHHHHHH
Q 004279 626 --EKG-----------RIDVIEFIIEQMHQ 642 (764)
Q Consensus 626 --~~g-----------~~~~a~~~~~~m~~ 642 (764)
+.| +...|..+|++...
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 333 45678888887754
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=4.2e-11 Score=124.74 Aligned_cols=284 Identities=11% Similarity=0.018 Sum_probs=208.9
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH--HHHHHHHccCCH
Q 004279 62 ALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL--LMMQALCKGGYL 138 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~ 138 (764)
....|+|+.|.+......+.. ..+.. |.....+..+.|+++.|.+.++++.+. .|+...+. .....+...|++
T Consensus 94 a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 334799999998888765542 22333 333344556889999999999999876 45543332 336678889999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhccChhH
Q 004279 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE-------VTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~ 211 (764)
+.|.+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+.
T Consensus 170 ~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 170 HAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999997643 345568888999999999999999999999987655322 133344444445556677
Q ss_pred HHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004279 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
..++|+.+.+..+.++.....+...+...|+.+.|.+++++..+. .++.
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~----------------------------- 296 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE----------------------------- 296 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH-----------------------------
Confidence 777777776667778888888999999999999999999888762 2221
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHH
Q 004279 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 370 (764)
--.++.+....++.+++.+..+...+. .|+.. .+..+-..|.+.+++++|.+.|+...+. .|+..++..+.
T Consensus 297 ----~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 297 ----RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred ----HHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 112345555668889999999888876 45544 4667778888999999999999988875 57778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 004279 371 VECSKALELDLAEALLDQIS 390 (764)
Q Consensus 371 ~~~~~~g~~~~A~~~~~~~~ 390 (764)
..+.+.|+.++|.+.+++-.
T Consensus 369 ~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888887653
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1e-13 Score=137.94 Aligned_cols=267 Identities=12% Similarity=0.018 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC
Q 004279 7 RTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG 86 (764)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~ 86 (764)
...+ .++..+.+.|++++|+ .++.+. .....|......|..+..-+...++++.|+..++++...+ +-+
T Consensus 9 ~~~l-~~A~~~~~~~~~~~Al-~~L~~~--------~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~ 77 (280)
T PF13429_consen 9 EEAL-RLARLLYQRGDYEKAL-EVLKKA--------AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-cccccccccccccccc-cccccc--------cccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 3344 5688999999999999 555332 1222122233444444444556899999999999999876 346
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004279 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..+..++.. ...++++.|.++++...+.. +++..+..++..+.+.|+++++.++++.+.+....+++...|..+..
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 6677777777 68899999999998877663 56777888899999999999999999998755445667788999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH
Q 004279 167 ACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.+.+.|+.++|++.++...+. .| |......++..+...|+.+++.++++...+..+.|+..+..+..+|...|+.++
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence 999999999999999999986 45 567788899999999999999999999988878888889999999999999999
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004279 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
|..+|++..+ ..|+++ .....+..++.+.|+.++|.++..+...
T Consensus 233 Al~~~~~~~~--~~p~d~------------------------------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 233 ALEYLEKALK--LNPDDP------------------------------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHH--HSTT-H------------------------------HHHHHHHHHHT-----------------
T ss_pred cccccccccc--cccccc------------------------------cccccccccccccccccccccccccccc
Confidence 9999999887 555542 4667888999999999999999887643
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=5.6e-10 Score=107.86 Aligned_cols=426 Identities=9% Similarity=0.015 Sum_probs=256.3
Q ss_pred HHhccChhHHHHHHHHHHcc--CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004279 203 AVWQKNLSAVHEIWEDYIKH--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
|.......+|+..|+.+++. ++.....-..+.+.+.+...+.+|++++...... .|...
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsin----------------- 271 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSIN----------------- 271 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccc-----------------
Confidence 33444456777777777764 3333344445566777888888888888877652 22210
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004279 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
++.-.-..+.+--.+.+.|+++.|+..|+...+. .|+..+--.|+-++...|+-++..+.|..|+..-..
T Consensus 272 --------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 272 --------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred --------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCC
Confidence 0000124455555677888888888888887765 577776555666666778888888888888764333
Q ss_pred Cchh------------HHHH-----HHHHHHhcCC--HHHHHHHHHHHhhCC---CC---cch----------H------
Q 004279 361 PQDS------------TIAT-----LSVECSKALE--LDLAEALLDQISRCT---NP---KPF----------S------ 399 (764)
Q Consensus 361 ~~~~------------~~~~-----li~~~~~~g~--~~~A~~~~~~~~~~~---~~---~~~----------~------ 399 (764)
||.. ..+. .+.-.-+... .+++.-.--.+...- +- .-| .
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 3222 2221 1111111111 111111111111100 00 001 0
Q ss_pred --HHHHHHhcCCCHHHHHHHHHHHhh-ccCCCH--HhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004279 400 --AFLAACDTMDKPERAIKIFAKMRQ-KLRPDI--RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 400 --~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
.-...|.++|+++.|+++++-..+ .-+.-. .+-...+.-+ ..++-+.. ...+.+.... .-.
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~fl-------qggk~~~~------aqqyad~aln-~dr 487 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFL-------QGGKDFAD------AQQYADIALN-IDR 487 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHH-------hcccchhH------HHHHHHHHhc-ccc
Confidence 112347889999999999887765 211111 1111112111 11111110 0011000000 000
Q ss_pred CcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004279 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550 (764)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l 550 (764)
-+....+.--..-...|++++|.+.+++.. ..|.. .|| +.-.+-..|+.++|++.|-++..- +..+......+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qi 564 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQI 564 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 111111111122345789999999998762 22322 233 233456789999999999887543 23466677778
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 004279 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630 (764)
Q Consensus 551 l~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 630 (764)
.+.|....+..+|.+++-+.... ++.|+...+.|.+.|-+.|+-.+|.+.+-.-- .-++-+..+..-|..-|....-+
T Consensus 565 aniye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHH
Confidence 88888889999999999777664 56688999999999999999999988765432 13455777777788888888889
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHHHHh
Q 004279 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG-YVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~ 678 (764)
++++.+|++.. -+.|+..-|-.++.. +.+.|.+.+|.++++.+.++
T Consensus 643 ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 643 EKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999999876 489999999998874 56689999999999988653
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=2.7e-10 Score=119.38 Aligned_cols=289 Identities=12% Similarity=-0.026 Sum_probs=178.9
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccH--HHHHHHHHHHHccCCH
Q 004279 62 ALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNN--KCYLLMMQALCKGGYL 138 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 138 (764)
....|+++.|.+.+.+..+.. |++.. +-....+..+.|+++.|.+.+++..+.. |+. ...-.....+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 445788999998888776653 44433 3344566667788899998888887653 333 2333446777788899
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH---HhccChhHHHHH
Q 004279 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA---VWQKNLSAVHEI 215 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~ 215 (764)
+.|.+.++.+.+.. +-+..++..+...+.+.|++++|.+++..+.+.++.+.......-..++ ...+..+.+.+.
T Consensus 170 ~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999888887653 3344577788888888899999999998888876543222111111111 222222222223
Q ss_pred HHHHHc----cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004279 216 WEDYIK----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 216 ~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
+..+.+ ..+.++..+..+...+...|+.+.|.+++++..+ ..|+...
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~--------------------------- 298 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRA--------------------------- 298 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCccc---------------------------
Confidence 333333 2335777777777788888888888888887776 3333310
Q ss_pred hHhh-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH
Q 004279 292 LRWS-FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 292 ~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 367 (764)
.. ...........++.+.+.+.++...+. .|+.. ...++-..+.+.|++++|.+.|+........|+...+.
T Consensus 299 --~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 299 --ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred --chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 01 111112223346666777777666654 34444 33456666777777777777777544444456666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004279 368 TLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 368 ~li~~~~~~g~~~~A~~~~~~~ 389 (764)
.+...+.+.|+.++|.+++++.
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777776654
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=9.6e-13 Score=130.95 Aligned_cols=258 Identities=12% Similarity=0.043 Sum_probs=86.4
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHH-HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH-ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
...+...|++++|+++++.......+|+...|-. +...+...++++.|++.++++...+. -++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 5556778888888888855443331244444433 44455566788888888888877652 355666676665 67788
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhccChhHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+++|.++++...++. ++...+..++..+.+.++++++..+++...... ..++...|..+...+.+.|+.++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888877665432 445566777777788888888888888766432 2345556666666667777777777777
Q ss_pred HHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004279 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
++..+..|.|....+.++..+...|+.+++.++++...+.. |+++ ..|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~------------------------------~~~ 217 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDP------------------------------DLW 217 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC------------------------------CHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHH------------------------------HHH
Confidence 77777666677777777777777777777777776666532 1110 255
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004279 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
..+..++...|+.++|+..|++..... +.|......+..++...|+.++|.++..+.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 666666777777777777777766542 224555555666666666666666665554
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.9e-10 Score=106.73 Aligned_cols=275 Identities=10% Similarity=0.032 Sum_probs=183.5
Q ss_pred HHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC-cccc--HHHHHHHHHHHHccC
Q 004279 60 VDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE-IGLN--NKCYLLMMQALCKGG 136 (764)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g 136 (764)
..+.-+.++++|+++|-+|.+.+ +-+.++..+|.+.|.+.|..+.|+++++.+.++. .+-+ ......|..-|...|
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 34566788999999999998854 3344556788888999999999999999988763 2111 235557778888999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhccChhHH
Q 004279 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV----TYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a 212 (764)
-+|.|+.+|..+.+..... ......|+..|-+..++++|+++-+++...+..+..+ -|..+-..+....+++.|
T Consensus 122 l~DRAE~~f~~L~de~efa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFA--EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcchhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999887533222 2367789999999999999999999888876555443 233444455556677777
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004279 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
..++.+..+..+..+.+--.+.+.+...|+++.|.+.++.+.+.+..--.
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~------------------------------ 249 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS------------------------------ 249 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH------------------------------
Confidence 77777777666666666666777777777777777777777763322111
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004279 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
.+...|..+|.+.|+.++....+.++.+.. +....-..+-..-......+.|..++.+-... +|+...+..+|..
T Consensus 250 -evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 250 -EVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 456667777777777777777777766642 23333333333333334444455444443333 3455555555543
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.6e-08 Score=96.37 Aligned_cols=428 Identities=13% Similarity=0.108 Sum_probs=255.6
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC
Q 004279 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
.++++..|..+|+........+...|-..+.+-.++..+..|..++++....-...+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----------------------- 141 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----------------------- 141 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-----------------------
Confidence 445555566666666655555555666666666666666666666666554211111
Q ss_pred cccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchh
Q 004279 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 364 (764)
-.|--.+..=-..|++..|.++|++-.+- .|+..+|.+.|+-=.+-+.++.|..+++...-. .|++.
T Consensus 142 ---------qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~ 208 (677)
T KOG1915|consen 142 ---------QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVS 208 (677)
T ss_pred ---------HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHH
Confidence 14444444444456666666666665543 566666666666666666666666666665542 35566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC-C----CcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCC--HHhHHHHHH
Q 004279 365 TIATLSVECSKALELDLAEALLDQISRCT-N----PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD--IRTYELLFS 437 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~--~~t~~~ll~ 437 (764)
+|-.....=.++|.+..|..+|....+.- + ...++++..-=.++..++.|.-+|+-....++.+ ...|.....
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 66555555666666666666666554321 1 1222333322334455556665555544422222 222222221
Q ss_pred HhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc--CCCCCh--hhHH
Q 004279 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGT--PTYN 513 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~--~~~~ 513 (764)
-=-+.|+...- +..-..++-.++...+.++.. |--+|--.+..-...|+.+...++++.. ..+|-. ..|.
T Consensus 289 fEKqfGd~~gI----Ed~Iv~KRk~qYE~~v~~np~--nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 289 FEKQFGDKEGI----EDAIVGKRKFQYEKEVSKNPY--NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHhcchhhh----HHHHhhhhhhHHHHHHHhCCC--CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 11111111000 001112222333334444433 3344555666666779999999999875 223321 1232
Q ss_pred HHHH--------HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChhHHHHHHHHHHHCCCCCCHHH
Q 004279 514 TVLH--------SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS----IIRCFKSASALVSMMVRDGFYPQTMT 581 (764)
Q Consensus 514 ~li~--------~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~p~~~~ 581 (764)
-.|. .=....+.+.+.++|+...+. ++-...||.-+=-.|+ ++.++..|.+++...+. ..|...+
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~Kl 439 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKL 439 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhH
Confidence 2222 223467899999999998883 4445567765544444 56788999999987764 5788899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHH
Q 004279 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYV 660 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 660 (764)
|-..|..=.+.+++|...+++++.++-+ +-|..+|......-...|+.++|..+|+-.++.. +......|...|..=.
T Consensus 440 Fk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 440 FKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI 518 (677)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh
Confidence 9999999999999999999999999654 4477899988888888999999999999998632 2223334444555556
Q ss_pred hcCChHHHHHHHHHHHHh
Q 004279 661 NCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 661 ~~g~~~~a~~~~~~~~~~ 678 (764)
..|.+++|..+++.+..+
T Consensus 519 ~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDR 536 (677)
T ss_pred hcchHHHHHHHHHHHHHh
Confidence 789999999999988764
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=1.8e-09 Score=112.60 Aligned_cols=117 Identities=15% Similarity=-0.006 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004279 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385 (764)
Q Consensus 306 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 385 (764)
.|+++.|.+.+....+..-.| ...|.....+....|+++.+...+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 699999998888766542111 2223333445578999999999999998754332222222446788999999999999
Q ss_pred HHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 386 LDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 386 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
++.+.+.. ++.....+...|.+.|++++|.+++..+.+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99987764 667788899999999999999999999998
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.34 E-value=3.9e-09 Score=110.72 Aligned_cols=127 Identities=11% Similarity=-0.071 Sum_probs=98.1
Q ss_pred HHHHHHH--HccCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 004279 297 SDVIHAC--GRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 297 ~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 373 (764)
..+..+. ...|+++.|.+.+.+..+. .|+... +-....+....|+.+.+...+....+....+...+.......+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 3344443 4589999999999887765 455433 3344566778899999999999988755333333444568888
Q ss_pred HhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-cc
Q 004279 374 SKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KL 425 (764)
Q Consensus 374 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~ 425 (764)
...|+++.|...++.+.+.. ++.++..+...+.+.|++++|.+++....+ ++
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999998764 667788899999999999999999999998 54
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=2.9e-09 Score=102.29 Aligned_cols=286 Identities=14% Similarity=0.017 Sum_probs=211.0
Q ss_pred hcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004279 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
..|+|.+|.++...-.+.+- -....|..-.++..+.||.+.+-..+.+..+.--.++...+-.........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 47999999999998777662 22334555667777889999999999999887445677777788888999999999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHhccChhHHHHHH
Q 004279 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV-------TYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
-++.+.+.. +-+.........+|.+.|++.....++..+.+.|.--|+. +|..+++-....++.+.-...|
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 888886543 3355688889999999999999999999999998776554 6777887777777777777788
Q ss_pred HHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004279 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
+........++..-.+++.-+..+|+.++|.++..+..+.+.+|..
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---------------------------------- 298 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---------------------------------- 298 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----------------------------------
Confidence 8777777777777778888888888888888888888876555432
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhc
Q 004279 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 376 (764)
...-.+.+-++...-++..+.-.... .-+.-.+.+|-..|.+.+.|.+|...|+...+ ..|+..+|+-+.+.+.+.
T Consensus 299 -~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 299 -CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred -HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 12233455666666666665554432 12335566677777788888888888875554 355677777777777777
Q ss_pred CCHHHHHHHHHHHh
Q 004279 377 LELDLAEALLDQIS 390 (764)
Q Consensus 377 g~~~~A~~~~~~~~ 390 (764)
|+.++|.+++++..
T Consensus 375 g~~~~A~~~r~e~L 388 (400)
T COG3071 375 GEPEEAEQVRREAL 388 (400)
T ss_pred CChHHHHHHHHHHH
Confidence 77777777766643
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.1e-08 Score=95.93 Aligned_cols=356 Identities=13% Similarity=0.110 Sum_probs=229.2
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHH
Q 004279 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 302 (764)
...|.+.+-.....+-+.|....|+..|..... .-| +.|.+.+..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~--~~P---------------------------------~~W~AWleL 204 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN--RYP---------------------------------WFWSAWLEL 204 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHh--cCC---------------------------------cchHHHHHH
Confidence 455566555556667788888888888887764 122 344444433
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHH
Q 004279 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYD--GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 303 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
..-..+.+.+. .... |...|.+-+. .+..++......+++..=.......|+.-+...-+....+.-...+++
T Consensus 205 ~~lit~~e~~~----~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD 279 (559)
T KOG1155|consen 205 SELITDIEILS----ILVV-GLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFD 279 (559)
T ss_pred HHhhchHHHHH----HHHh-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHH
Confidence 32222232222 2221 1122222111 233455566677777777777777777655555555555556667777
Q ss_pred HHHHHHHHHhhCC-----CCcchHHHHHHHhcCCCHHH-HHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhh
Q 004279 381 LAEALLDQISRCT-----NPKPFSAFLAACDTMDKPER-AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454 (764)
Q Consensus 381 ~A~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~ 454 (764)
.|+.+|+++.+.. |..+|+.++-.-....+..- |..++ .+. ..+
T Consensus 280 ~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~id-KyR---------------------------- 329 (559)
T KOG1155|consen 280 QAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NID-KYR---------------------------- 329 (559)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc-cCC----------------------------
Confidence 7777777777652 33444444322111111000 00000 000 111
Q ss_pred hhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-CC-CCChhhHHHHHHHHHHcCChhHHHHHH
Q 004279 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KT-PLGTPTYNTVLHSLVEAQESHRAMEIF 532 (764)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~l~ 532 (764)
+.++..+.+-|+-.++-+.|...|+.. .. +.....|+-|.+-|....+...|++-|
T Consensus 330 ----------------------~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 330 ----------------------PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred ----------------------ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 222333445566667788888888764 22 334568999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004279 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612 (764)
Q Consensus 533 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 612 (764)
+...+-+ +.|-..|-.|-++|...+.+.-|+-+|++..+.. +-|...|.+|.++|.+.+++++|++-|.+....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9998864 4577889999999999999999999999998863 4578999999999999999999999999988665 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHhhHH---HHHHHHHhcCChHHHHHHHHH
Q 004279 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPDPSTCH---FVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 613 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~ 674 (764)
+...+..|...|-+.++.++|...+++.++. |..-+ .|.. .|..-+.+.+++++|..+...
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~-~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD-ETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 6678999999999999999999888877652 32222 2222 234467778888888776653
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=2.5e-10 Score=116.54 Aligned_cols=283 Identities=12% Similarity=-0.035 Sum_probs=144.3
Q ss_pred CCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccCCH-HHHH
Q 004279 66 GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYL-EEAS 142 (764)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~-~~A~ 142 (764)
-++++|+..|+++..+. .-+......+.++|...++++.|..+|+.+.+.. ..-+..+|..++-.+-+.=.. --|.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 45566666666643332 2222334455556666666666666666665542 112444555554333221100 0112
Q ss_pred HHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004279 143 NLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.+.+ .+...| .+|-++.++|.-+++.+.|++.|++..+. .| ...+|+.+-.-+....++|.|...|...+.
T Consensus 412 ~Li~----~~~~sP--esWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 412 DLID----TDPNSP--ESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHh----hCCCCc--HHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2222 222222 36666666666666666666666665553 23 444555554455555666666666666655
Q ss_pred cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHH
Q 004279 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
-.+.+-.+|.-|...|.|.++++.|.-.|+++.+ +.|.. .+....+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~n------------------------------svi~~~~g~ 531 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSN------------------------------SVILCHIGR 531 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccc------------------------------hhHHhhhhH
Confidence 5555555555566666666666666666666655 34433 123334445
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHH
Q 004279 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381 (764)
Q Consensus 302 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (764)
.+-+.|+.++|+++|++......+ |+.+---....+...+++++|+..++++.+.-+. +..++..+...|-+.|+.+.
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchH
Confidence 555566666666666665544311 3333333344445556666666666666554222 33444455555555555555
Q ss_pred HHHHHHHHhh
Q 004279 382 AEALLDQISR 391 (764)
Q Consensus 382 A~~~~~~~~~ 391 (764)
|..-|.-+.+
T Consensus 610 Al~~f~~A~~ 619 (638)
T KOG1126|consen 610 ALLHFSWALD 619 (638)
T ss_pred HHHhhHHHhc
Confidence 5555554443
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=3.3e-10 Score=115.60 Aligned_cols=281 Identities=8% Similarity=-0.029 Sum_probs=187.2
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHH
Q 004279 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCL 181 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 181 (764)
..+|...|+..... +.-+.+....+..+|...+++++|+++|+.+.+..+... +..+|.+.+.-+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677777774433 334446667777888888888888888887765543322 34466666654432 2222222
Q ss_pred H-HHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcc
Q 004279 182 D-LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260 (764)
Q Consensus 182 ~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 260 (764)
. .+... -+-.+.||.++-++|.-+++.+.|.+.|++..+-.+....+|+.+.+=+.....+|.|...|..... +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 1 12221 1225667888888888888888888888888777777778888888777788888888888887765 333
Q ss_pred cchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004279 261 KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340 (764)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 340 (764)
... .+|.-+.-.|.+.++++.|.-.|+...+.+. -+.+....+...+-+
T Consensus 487 rhY------------------------------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 487 RHY------------------------------NAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQ 535 (638)
T ss_pred hhh------------------------------HHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHH
Confidence 321 3566667778888888888888887776542 244455556666777
Q ss_pred cCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHH
Q 004279 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIF 418 (764)
Q Consensus 341 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~ 418 (764)
.|+.++|++++++....+.+ |+-.--.-+..+...++.++|+..+++++... +...+-.+...|.+.|+.+.|+.-|
T Consensus 536 ~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 78888888888887776655 33333334445666678888888888877643 5666777778888888888888777
Q ss_pred HHHhh
Q 004279 419 AKMRQ 423 (764)
Q Consensus 419 ~~m~~ 423 (764)
.-+..
T Consensus 615 ~~A~~ 619 (638)
T KOG1126|consen 615 SWALD 619 (638)
T ss_pred HHHhc
Confidence 77766
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=1.7e-06 Score=88.25 Aligned_cols=295 Identities=14% Similarity=0.114 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCC---------
Q 004279 365 TIATLSVECSKALELDLAEALLDQISRCT--N----PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPD--------- 428 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~--------- 428 (764)
.+..+.+.|-..|+++.|..+|+....-+ . ..+|-.-...=.+..+++.|+++.+.... .-.|.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 35677778888888888888888887653 1 12233333344456677777777666543 11111
Q ss_pred --HHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcC--
Q 004279 429 --IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK-- 504 (764)
Q Consensus 429 --~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 504 (764)
...+.++ ...+..-+ +.+.++-.+..+.+++.+....+.....+ -...-.+-.+..++++.+++++..
T Consensus 469 vQ~rlhrSl-kiWs~y~D------leEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 469 VQARLHRSL-KIWSMYAD------LEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHhH-HHHHHHHH------HHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 0111111 00000001 11112222344455555555554322222 222223345566788888887642
Q ss_pred -CCCChh-hHHHHHHHHHHc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HccCChhHHHHHHHHHHHCCCCC
Q 004279 505 -TPLGTP-TYNTVLHSLVEA---QESHRAMEIFKQMKTCGIPPNAATYNIMIDCC--SIIRCFKSASALVSMMVRDGFYP 577 (764)
Q Consensus 505 -~~~~~~-~~~~li~~~~~~---~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~p 577 (764)
..|++. .||+.+.-+.+. -..+.|..+|++..+ |++|...-+.-|+-+- -..|....|..++++.... +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~ 618 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKE 618 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCH
Confidence 235543 788777666653 367889999999888 6776554443333221 1347777888888886653 333
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCC--CHh
Q 004279 578 Q--TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI---LKKACEKGRIDVIEFIIEQMHQNKVQP--DPS 650 (764)
Q Consensus 578 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~ 650 (764)
. ...||..|.--...=-+.....+|++.++. -||...-..- ...=++.|..++|..++..--+. ..| +..
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~ 695 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTE 695 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChH
Confidence 3 345777665544443445566677777654 4555443332 33346778888988888776542 333 344
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 004279 651 TCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
.|.+.-..=.+.|+-+...+.+
T Consensus 696 fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 696 FWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH
Confidence 4555555567788844444433
No 51
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=9.3e-08 Score=97.52 Aligned_cols=491 Identities=13% Similarity=0.124 Sum_probs=255.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 004279 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
..++..| ..+++...+++.+.+.++.+-.++ +.....-.+...|+.++|......-.+..+. +.+.|..+--.+..
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 3344433 345666666666666655444444 3333333345567777777766665554333 55566666655666
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCc
Q 004279 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
..++++|.+.|....+-.+.|...+.-|--.-+..++++.....-....+ ..|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~----------------------- 142 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQ----------------------- 142 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhh-----------------------
Confidence 67777777777777776677777777766666677777777776666665 33332
Q ss_pred ccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHH------HHHhcCChhHHHHHHHHHHHCC
Q 004279 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIR------AIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~------~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
...|..+..++.-.|+...|..++++..+.. -.|+...|.-... ...+.|..+.|.+-+..-...
T Consensus 143 -------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 143 -------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 2477778888888888888888888877654 2455555443322 233566666666655544332
Q ss_pred CCCchhHH-HHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHH-HHHHHhcCCCHHHHH-HHHHHHhhc----cCCCHH
Q 004279 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISRCT-NPKPFSA-FLAACDTMDKPERAI-KIFAKMRQK----LRPDIR 430 (764)
Q Consensus 359 ~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-li~~~~~~g~~~~a~-~l~~~m~~~----~~p~~~ 430 (764)
+. |...+ -.-...+.+.+++++|..++..+..+. |...|.- +..++.+-.+.-+++ .+|....+. -.|-..
T Consensus 215 i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 215 IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 11 22222 245566778888888888888887664 4444443 344443333333444 555554431 111111
Q ss_pred hHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChh
Q 004279 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510 (764)
Q Consensus 431 t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 510 (764)
..+.+ . .......+..+.....+.|+++- +..+.+.|-.-...+ +
T Consensus 294 plsvl-~----------------~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~----~----------- 338 (700)
T KOG1156|consen 294 PLSVL-N----------------GEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVA----F----------- 338 (700)
T ss_pred cHHHh-C----------------cchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhH----H-----------
Confidence 11111 1 01122334445555666666542 222322222111110 0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 004279 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA--TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT-MTYTALIK 587 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~li~ 587 (764)
.--++..|...-.........+.=.. -+|... |+-.+...+-+.|+++.|+.+++..+.+ .|+. ..|..=.+
T Consensus 339 -le~Lvt~y~~~L~~~~~f~~~D~~~~--E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaR 413 (700)
T KOG1156|consen 339 -LEKLVTSYQHSLSGTGMFNFLDDGKQ--EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKAR 413 (700)
T ss_pred -HHHHHHHHHhhcccccCCCccccccc--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHH
Confidence 00111111110000000000000000 133433 3344555566667777777777776664 3443 33444456
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHhhHHHHH---HHH
Q 004279 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP-----DPSTCHFVF---SGY 659 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll---~~~ 659 (764)
.+...|.+++|..++++..+.. .||..+-.--..-..++++.++|.++.....+.|..- +..+.+..+ .+|
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay 492 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAY 492 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHH
Confidence 6677777777777777766543 4454444344444556667777777776666555310 111111122 377
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhh
Q 004279 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA 700 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (764)
.+.|++..|++=|..+.+. ...|.+-.--+|..+..
T Consensus 493 ~r~~k~g~ALKkfh~i~k~-----~~~~~~dqfDfhtyc~r 528 (700)
T KOG1156|consen 493 LRQNKLGLALKKFHEIEKH-----YKTWSEDQFDFHTYCMR 528 (700)
T ss_pred HHHHHHHHHHHHHhhHHHH-----HHHHhhhhhhHHHHHHh
Confidence 7888888887776665532 12444444445555543
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.3e-07 Score=89.01 Aligned_cols=137 Identities=7% Similarity=0.079 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004279 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
--.++.+.+.-..++++.+-.++.+..--..-|...| .+..+++..|.+.+|+++|-.+....++.+..-...|.++|.
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 3445666666667788888888877765333333333 466788888999999999877765555544444466778889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 004279 591 DYGDFDEALNLLDLVSLEGIPHDVL-LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 653 (764)
+++.++-|++++-++.. +.+.. ....+..-|.+.+.+=-|-+.|+.+.. ..|++..|.
T Consensus 440 ~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred hcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 99999999888776531 22233 334455678888888777888887764 567766553
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.3e-12 Score=87.19 Aligned_cols=50 Identities=36% Similarity=0.574 Sum_probs=40.7
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004279 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888888764
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=9.5e-09 Score=95.67 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=91.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCchh--HHHHHHHHHHhcCCHHH
Q 004279 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN-LKPQDS--TIATLSVECSKALELDL 381 (764)
Q Consensus 305 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~li~~~~~~g~~~~ 381 (764)
-+.+.++|.++|-+|.+.. +-+..+--+|-+.|.+.|..+.|+.+++.+.++- ..-+.. ....|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3678999999999999742 1233344567788889999999999999988753 221111 23467788999999999
Q ss_pred HHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 382 AEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 382 A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
|+.+|..+.+.+ -...--.|+..|-...+|++|++.-+++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999998864 445566789999999999999999888876
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.6e-09 Score=100.93 Aligned_cols=307 Identities=9% Similarity=-0.060 Sum_probs=214.7
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHH
Q 004279 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 139 (764)
+-...+.++++.-.+.+...|.+.+...-+....+.-...|++.|..+|+++.+.+. -.|..+|+.++-+--.+.++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 334456666666666666666443333323333333355788888888888887741 125667777664433322221
Q ss_pred -HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004279 140 -EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 140 -~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
-|..+++ -+..+|. |.-.+.+-|+-.++.++|...|++..+.++. ....|+.+-.-|....+-..|.+-+..
T Consensus 317 ~LA~~v~~----idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 317 YLAQNVSN----IDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH----hccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2333322 2334444 6666777778888899999999998886533 556777788889999999999999999
Q ss_pred HHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHH
Q 004279 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.++-.|.|-..|-.|..+|.-.+-+.-|+-.|++..+ .+|++ ...|.+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnD------------------------------sRlw~a 437 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPND------------------------------SRLWVA 437 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCc------------------------------hHHHHH
Confidence 9999999999999999999999999999999999888 77776 368999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCchhH--HHHHHHH
Q 004279 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ----NNLKPQDST--IATLSVE 372 (764)
Q Consensus 299 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~--~~~li~~ 372 (764)
|..+|.+.++.++|++.|.+....|- .+...+..|.+.+-+.++.++|...|....+ .|...+... ..-|..-
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 99999999999999999999888763 2557888899999999999999988887665 233322121 1235556
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
+.+.+++++|.........- .-..++|..+++++++
T Consensus 517 f~k~~~~~~As~Ya~~~~~~---------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLVLKG---------------ETECEEAKALLREIRK 552 (559)
T ss_pred HHhhcchHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHH
Confidence 67778887776544433221 3346788888888776
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=9.3e-07 Score=90.45 Aligned_cols=474 Identities=10% Similarity=0.001 Sum_probs=290.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004279 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
..+..+-..+++...+.+.+.+.+.. +-...+.....-.+...|+.++|.+..+...+.+ ..+.+.|..+.-.+-...
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhh
Confidence 33455667788888888888887733 4444555544444455688999998888887765 456778888887777788
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHH
Q 004279 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
++++|++.|.....-. +.|...|.-|--.-++.|+++.....-....+..+ -....|....-++.-.|+...|..+.
T Consensus 90 ~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876422 33555666665556677888877777666666421 14446667777777889999999999
Q ss_pred HHHHccC--CCCHHhHHHHHH------HhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004279 217 EDYIKHY--SLSIFSLRKFVW------SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 217 ~~~~~~~--~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
+...+.. .|+...+..... ...+.|.++.|.+.+..-...-+..-
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl--------------------------- 219 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL--------------------------- 219 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH---------------------------
Confidence 9998753 577666555433 34567788888777666544211110
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hcCChhHH-HHHHHHHHHCCCCCchhHH
Q 004279 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SDRGLRNG-MEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~a-~~~~~~m~~~~~~~~~~~~ 366 (764)
..-.+-...+.+.+++++|..++..+... .||...|...+..+. +..+..++ ..+|....+.-.......
T Consensus 220 -----a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~- 291 (700)
T KOG1156|consen 220 -----AFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR- 291 (700)
T ss_pred -----HHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch-
Confidence 12233456678889999999999999987 588887776665444 33333333 366665554321111000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCch
Q 004279 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY 446 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~ 446 (764)
..=++......-.+....++....+.|-+.++..+.+-|-.-...+ ++++.. ..|...++..+.....
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~----~le~Lv-------t~y~~~L~~~~~f~~~- 359 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA----FLEKLV-------TSYQHSLSGTGMFNFL- 359 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH----HHHHHH-------HHHHhhcccccCCCcc-
Confidence 0000111111112223334444444445556666655554433222 222211 1111111111110000
Q ss_pred hhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHH--HHHHHhccCcHHHHHHHHHhc-CCCCChh-hHHHHHHHHHHc
Q 004279 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN--LLKALGAEGMIRELIQYFCDS-KTPLGTP-TYNTVLHSLVEA 522 (764)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~li~~~~~~ 522 (764)
+. ..-=+|+...|+. ++..|-+.|+++.|...++.. ...|+.+ .|-+=...+...
T Consensus 360 ---------D~------------~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~ 418 (700)
T KOG1156|consen 360 ---------DD------------GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA 418 (700)
T ss_pred ---------cc------------cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc
Confidence 00 0011455555554 788899999999999999875 3345543 565666788889
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH--------HHH--HHHHHHhc
Q 004279 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT--------YTA--LIKILLDY 592 (764)
Q Consensus 523 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~--------~~~--li~~~~~~ 592 (764)
|++++|..++++.++.+ .||...-.--.....+.+..++|..+.....+.|. +... |-. =..+|.+.
T Consensus 419 G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~ 495 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQ 495 (700)
T ss_pred CChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHH
Confidence 99999999999999876 45665544555566678999999999999998875 2222 211 13567788
Q ss_pred CCHHHHHHHHHHHH
Q 004279 593 GDFDEALNLLDLVS 606 (764)
Q Consensus 593 g~~~~A~~~~~~m~ 606 (764)
|++-.|++=|..+.
T Consensus 496 ~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 496 NKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHhhHH
Confidence 88877776665543
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.6e-08 Score=96.96 Aligned_cols=191 Identities=15% Similarity=0.122 Sum_probs=141.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 004279 480 MKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557 (764)
Q Consensus 480 ~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 557 (764)
|-.+..+|....+-++....|+.. ..+-+..+|..-...+.-.+++++|..=|++.+... +-+...|.-+-.+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 334555677777777777777664 234456678777777788889999999999988853 22445566666666788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CC--HHHHHHHHHHHHHcCCH
Q 004279 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP-----HD--VLLYNTILKKACEKGRI 630 (764)
Q Consensus 558 ~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~--~~~~~~li~~~~~~g~~ 630 (764)
+.++++...|++.++. ++-.+..|+.....+...++++.|.+.|+..++..-. .+ +.+--.++-.-.+ +++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhH
Confidence 9999999999999886 6667888999999999999999999999998753211 12 2222233332233 889
Q ss_pred HHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004279 631 DVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
..|+.++++..+ +.|. ...|..|...-...|+.++|+++|++-
T Consensus 520 ~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 520 NQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999985 5564 446777888999999999999999864
No 58
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.5e-06 Score=92.79 Aligned_cols=492 Identities=14% Similarity=0.117 Sum_probs=275.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCC--CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004279 125 YLLMMQALCKGGYLEEASNLIYFLGERYGI--YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
+..+.+.|.++|-+..|++.+..+..-... ..+...=..++ .|.-.-.++.+.+.++.|...++.-+..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 566778888999999998877765321100 00000011122 344456789999999999998888888777777777
Q ss_pred HHhccChhHHHHHHHHHHc------------cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccc
Q 004279 203 AVWQKNLSAVHEIWEDYIK------------HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 270 (764)
|..+=..+...++|+.... .+..|+.+.-..|.+.++.|++.+..++-++--- ..| ..+..
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~--Ydp-----ErvKN 760 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNC--YDP-----ERVKN 760 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcccc--CCH-----HHHHH
Confidence 7766666777777777653 1567888888899999999999888777544211 111 11122
Q ss_pred cccccccCCCccCCccc-----chhhhHhhH-------------------------------------------------
Q 004279 271 RLRSSRLDIPIPLNALP-----VMKVLRWSF------------------------------------------------- 296 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------------------------------------------- 296 (764)
.++++.+....|.-... ..+...+.|
T Consensus 761 fLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~ 840 (1666)
T KOG0985|consen 761 FLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP 840 (1666)
T ss_pred HHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC
Confidence 33333333322221000 000000111
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH----------HHHHHHHHHCC-------
Q 004279 297 -SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG----------MEVLKIMQQNN------- 358 (764)
Q Consensus 297 -~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a----------~~~~~~m~~~~------- 358 (764)
..|+.-.-+.++...-...++...+.|.. |..|+++|.+.|..+++-.+- ..+=+...+++
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEe
Confidence 11122222333444444455555555543 666666666666544332111 11101111111
Q ss_pred ------------CCCchhHHHHHHHHHHhcCCHHHHHHHH-----------HHHhhCC-----CCcchHHHHHHHhcCCC
Q 004279 359 ------------LKPQDSTIATLSVECSKALELDLAEALL-----------DQISRCT-----NPKPFSAFLAACDTMDK 410 (764)
Q Consensus 359 ------------~~~~~~~~~~li~~~~~~g~~~~A~~~~-----------~~~~~~~-----~~~~~~~li~~~~~~g~ 410 (764)
+.-..+.|....+.+.+..+.+.-.+++ ++..... |+..-+..+.++...+-
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 0111222333444444444444333333 2222211 55566677788888888
Q ss_pred HHHHHHHHHHHhhccCCCHH-----hHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 004279 411 PERAIKIFAKMRQKLRPDIR-----TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485 (764)
Q Consensus 411 ~~~a~~l~~~m~~~~~p~~~-----t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (764)
+.+-+++++++.- .|+.+ .-+.++-...+.. . .++.++-+.+-... .|+ +..
T Consensus 1000 p~eLIELLEKIvL--~~S~Fse~~nLQnLLiLtAikad-~-------------trVm~YI~rLdnyD-a~~------ia~ 1056 (1666)
T KOG0985|consen 1000 PNELIELLEKIVL--DNSVFSENRNLQNLLILTAIKAD-R-------------TRVMEYINRLDNYD-APD------IAE 1056 (1666)
T ss_pred cHHHHHHHHHHhc--CCcccccchhhhhhHHHHHhhcC-h-------------HHHHHHHHHhccCC-chh------HHH
Confidence 8888888888764 22222 2222222111111 0 11111111110000 011 111
Q ss_pred HHhccCcHHHHHHHHHhcCC------------------------CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 004279 486 ALGAEGMIRELIQYFCDSKT------------------------PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541 (764)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~ 541 (764)
.....+.+++|..+|++... -.....|+.+..+-.+.|...+|++-|-+ .
T Consensus 1057 iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------a 1130 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------A 1130 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------c
Confidence 22223334444444432100 01234788888888888888888877644 2
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004279 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 542 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
-|+..|.-+++.+.+.|.+++-.+++....+..-.|.+. +.||-+|++.+++.+-++++. .||......+-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVG 1201 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHh
Confidence 477889999999999999999999999888877677665 478999999999888777653 58888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 004279 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 622 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
+-|...|.++.|.-+|... ..|..|...+...|++..|...-
T Consensus 1202 drcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888887766543 34555666667777776665443
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=8.2e-07 Score=90.52 Aligned_cols=349 Identities=11% Similarity=0.070 Sum_probs=192.9
Q ss_pred hhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC------CCCcchHHHHHHHhhCCCChh---HHHH
Q 004279 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH------SLGADDFFHILNYCARSPDPL---FVME 108 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~---~a~~ 108 (764)
|.|..-++..|+. ...+ +.-++..+++++|-+.+.++...+. +-+...++-+-...+++.+.- ..-.
T Consensus 159 rvyrRYLk~~P~~-~eey---ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda 234 (835)
T KOG2047|consen 159 RVYRRYLKVAPEA-REEY---IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA 234 (835)
T ss_pred HHHHHHHhcCHHH-HHHH---HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH
Confidence 6666667777775 3334 5667889999999999988874421 222334555555555554332 2344
Q ss_pred HHHHHHHcCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC--------------
Q 004279 109 TWRMMEEKEIGLNN--KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH-------------- 172 (764)
Q Consensus 109 ~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------------- 172 (764)
+++.+..+ -+|. ..|++|..-|.+.|.+++|..+|++..+. ..++.-|+.+.++|++-.
T Consensus 235 iiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 235 IIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 55555443 3443 47899999999999999999999987653 123334555555555321
Q ss_pred --------CHHHHHHHHHHHHhcCC-----------CCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCC------H
Q 004279 173 --------SMVHANLCLDLMDSRMV-----------GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS------I 227 (764)
Q Consensus 173 --------~~~~A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~ 227 (764)
+++-.+.-|+.+...+. ..++.+|..-++ ...|+..+....|.+..+...|. .
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPG 387 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChh
Confidence 12222333333332211 011222222221 23455666677777777653332 2
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccC
Q 004279 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 307 (764)
..|..+...|-..|+++.|..+|++..+...+.-.. ...+|-.....=.++.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d----------------------------La~vw~~waemElrh~ 439 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED----------------------------LAEVWCAWAEMELRHE 439 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH----------------------------HHHHHHHHHHHHHhhh
Confidence 357788888889999999999999988733322110 0246666667777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCc--------------------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH
Q 004279 308 NSGLAEQLMLQMQSLGLQPSS--------------------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~g~~p~~--------------------~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 367 (764)
+++.|+++.++... .|.. ..|...++.--..|-++....+|+.+.+..+. ++.+.-
T Consensus 440 ~~~~Al~lm~~A~~---vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~ 515 (835)
T KOG2047|consen 440 NFEAALKLMRRATH---VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIII 515 (835)
T ss_pred hHHHHHHHHHhhhc---CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 88888888777653 2222 12222233333445566666666666655543 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC----CCcchHHHHHHHhcC---CCHHHHHHHHHHHhhccCCCH
Q 004279 368 TLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTM---DKPERAIKIFAKMRQKLRPDI 429 (764)
Q Consensus 368 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~~~p~~ 429 (764)
.....+-.+.-++++.++++.-.... --..|++.+.-+.+. ..++.|..+|++..++++|..
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence 22223334444555555555433221 112355544444331 245566666666555444443
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.4e-11 Score=83.92 Aligned_cols=49 Identities=35% Similarity=0.620 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004279 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625 (764)
Q Consensus 577 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 625 (764)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444455555555555555555555555554455555555555554443
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=1.1e-07 Score=91.56 Aligned_cols=133 Identities=11% Similarity=0.039 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 004279 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR-DGFYPQTMTYTALI 586 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~p~~~~~~~li 586 (764)
++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.+.+.++.+.-.+..+.-.+ .+-.| -.+.+|.
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG 335 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLG 335 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHH
Confidence 344455566677778888888888888777766665222 2234555666666666655443 33333 5677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004279 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648 (764)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 648 (764)
..|.+.+.+.+|.+.|+... ...|+..+|+.+..++.+.|+..+|.++.++.+..-..|+
T Consensus 336 ~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 336 RLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888665 3467888888888888888888888887777664433343
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=3.6e-09 Score=102.67 Aligned_cols=203 Identities=14% Similarity=-0.013 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHH
Q 004279 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 129 (764)
.....+..+...+...|++++|++.+++..... +.+...+..+...+...|+++.|.+.+++..+.+ +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 334556667788899999999999999988765 3456677888889999999999999999999875 44667888889
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccCh
Q 004279 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..+...|++++|.+.|++..+....+.....+..+...+...|++++|...|+........ +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 9999999999999999998753222233456777888899999999999999998876422 456788888889999999
Q ss_pred hHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++|...++...+..+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999887666778888888999999999999999888765
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=7.9e-07 Score=83.97 Aligned_cols=448 Identities=12% Similarity=0.088 Sum_probs=234.5
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHH-HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH-ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+..+..+.++..|+.+++--...+.. ..+.... +..++...|++++|...+..+.... .++...+-.|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 66778888999999988776544321 1222333 3445557799999999998887754 4555555555555555688
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
+.+|..+-....+ +...-..|...--+.++-++-..+-+.+.+. ..---+|.+..-..-.+.+|.+++.
T Consensus 107 Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8888887664431 2223334444455667766666655554432 1112233333444556777888887
Q ss_pred HHHccCCCCHHhHHHHHH-HhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004279 218 DYIKHYSLSIFSLRKFVW-SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.+... .|.-...|..+. +|.+.+-.+.+.++++-..+ -.||.+ .+-
T Consensus 176 rvL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdSt------------------------------iA~ 222 (557)
T KOG3785|consen 176 RVLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDST------------------------------IAK 222 (557)
T ss_pred HHHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcH------------------------------HHH
Confidence 77653 233334443333 55677777777777776665 234431 233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCchhHHHHHHH
Q 004279 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS-----DRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 371 (764)
|.......+.=+-..|.+-.+++...+-. . |. .+.-+++ -++-+.|++++--+.+. .|. .-..|+-
T Consensus 223 NLkacn~fRl~ngr~ae~E~k~ladN~~~--~--~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~i 293 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAEDEKKELADNIDQ--E--YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLII 293 (557)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHhcccc--c--ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhhee
Confidence 33333333322222333334444433211 0 11 1111222 23445566665554432 121 1223444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHH--hcCCC-------HHHHHHHHHHHhhccCCCHHhHHHHHHHhcCC
Q 004279 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAAC--DTMDK-------PERAIKIFAKMRQKLRPDIRTYELLFSLFGNV 442 (764)
Q Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~--~~~g~-------~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~ 442 (764)
.|.+.+++++|..+.+.+... ..|.-++.+. ...|+ ..-|.+.|+-.
T Consensus 294 YyL~q~dVqeA~~L~Kdl~Pt---tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV--------------------- 349 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPT---TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV--------------------- 349 (557)
T ss_pred eecccccHHHHHHHHhhcCCC---ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh---------------------
Confidence 566666666666666665422 2233333322 12221 12222222221
Q ss_pred CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHhccCcHHHHHHHHHhcC---CCCChhhHHHHHHH
Q 004279 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS-MKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHS 518 (764)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~li~~ 518 (764)
-..+..-|... --++.+.+.-..++++++-.++... ...|...+| +..+
T Consensus 350 --------------------------G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQA 402 (557)
T KOG3785|consen 350 --------------------------GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQA 402 (557)
T ss_pred --------------------------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHH
Confidence 11222111111 1123333333444555554443331 223344443 6678
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHH
Q 004279 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA-LIKILLDYGDFD 596 (764)
Q Consensus 519 ~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~-li~~~~~~g~~~ 596 (764)
++..|++.+|+++|-++....++ |..+|.+++ ++|.+.+.++.|+.++-.+. -+.+..+.-. +..-|-+++.+-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999877655444 566666554 57778888888877664442 2233333333 345567788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 004279 597 EALNLLDLVSLEGIPHDVLLYN 618 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~~~~~~ 618 (764)
-|-+.|+.+.. ..|++.-|.
T Consensus 479 yaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 479 YAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHhhhHHHc--cCCCccccC
Confidence 88888887763 467776664
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.4e-09 Score=100.88 Aligned_cols=229 Identities=10% Similarity=0.083 Sum_probs=184.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHH
Q 004279 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE-LLKLAV 204 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~ 204 (764)
+.+...|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-++|.+-.+++.|+.+|.+-.+. .|..+||.. +.+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 57888889999999999999877654 355668888999999999999999999887774 577777653 556677
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC
Q 004279 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
..++.+.|.++|+...+..+.++.+..++...|.-.++++.|++.+.++.+.|+....
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---------------------- 359 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---------------------- 359 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH----------------------
Confidence 7889999999999999988888888888888888899999999999999998887765
Q ss_pred cccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 004279 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH--TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 362 (764)
.|+.+.-+|.-.+++|-++.-|.+....--.|+.. .|-.+-...+..||+..|.+.|+.....+.. +
T Consensus 360 ----------Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h 428 (478)
T KOG1129|consen 360 ----------LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-H 428 (478)
T ss_pred ----------HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-h
Confidence 88888888889999999999998887654445443 4666666677888999999999888877655 5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004279 363 DSTIATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 392 (764)
...++.|.-.-.+.|+++.|..+++.....
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 566777777777888888888888777654
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=3.9e-08 Score=96.73 Aligned_cols=324 Identities=11% Similarity=-0.055 Sum_probs=189.0
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCC-cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004279 58 QIVDALCRGERSRASHLLLNLGHAHHSLG-ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
....|-++|.+++|++.|.+.++.. |+ +.-|.....+|...|+++.+.+-....++.+ +.-+..+..-.+++-..|
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhc
Confidence 3455667899999999999999875 77 5557777788889999999999999888874 233557777788888889
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHh---------
Q 004279 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MVGKNEVTYTELLKLAVW--------- 205 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~--------- 205 (764)
++++|+.=..-..-..++. |. .-..++.-..+.--...+.+- +... -+-|+.....+.+..+..
T Consensus 198 ~~~eal~D~tv~ci~~~F~-n~-s~~~~~eR~Lkk~a~~ka~e~---~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQ-NA-SIEPMAERVLKKQAMKKAKEK---LKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred cHHHHHHhhhHHHHhhhcc-cc-hhHHHHHHHHHHHHHHHHHHh---hcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 9888755332221111111 11 111111111111001111111 2211 122333222222222110
Q ss_pred ----------------cc---ChhHHHHHHHHHHcc--CCCC-----------HHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004279 206 ----------------QK---NLSAVHEIWEDYIKH--YSLS-----------IFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 206 ----------------~~---~~~~a~~~~~~~~~~--~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
.+ .+..+.+.+.+-..+ ..++ ..+...-..-+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00 122222222221111 1111 111111222234557777777777777
Q ss_pred HHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 004279 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333 (764)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 333 (764)
.+....++. .|--+...|.+..+.++.+..|......+ +-|+.+|..
T Consensus 353 I~l~~~~~~--------------------------------lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyH 399 (606)
T KOG0547|consen 353 IKLDPAFNS--------------------------------LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYH 399 (606)
T ss_pred HhcCcccch--------------------------------HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHh
Confidence 763333222 35566677788888888888888877655 225556655
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCH
Q 004279 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKP 411 (764)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~ 411 (764)
--....-.+++++|..=|++.+..... +...|-.+-.+.-|.++++++...|++...+. .+..||-....+...+++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 555556667788888888877776544 44555566666667788888888888877654 667788888888888888
Q ss_pred HHHHHHHHHHhh
Q 004279 412 ERAIKIFAKMRQ 423 (764)
Q Consensus 412 ~~a~~l~~~m~~ 423 (764)
+.|.+.|+....
T Consensus 479 d~A~k~YD~ai~ 490 (606)
T KOG0547|consen 479 DKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHh
Confidence 888888887665
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.7e-07 Score=88.93 Aligned_cols=271 Identities=9% Similarity=0.002 Sum_probs=167.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
....-..-+...+++.+..++++...+.. ++....+..=|.++...|+..+-..+=..+.+.-+. ...+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHH
Confidence 34445566777888999999999888764 556666766777888888888777777777776544 5667777777777
Q ss_pred hcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh---c-cCCCHHhHHHHHHHhcCCCCchhh
Q 004279 375 KALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ---K-LRPDIRTYELLFSLFGNVNAPYEE 448 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~-~~p~~~t~~~ll~~~~~~~~~~~~ 448 (764)
-.|+..+|++.|....... -...|-.+...|.-.|..+.|+..+...-+ | ..|.. |
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y---------------- 385 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y---------------- 385 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H----------------
Confidence 7888999999888876653 345688888888888888888887766544 1 11110 0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-CC-CCChhhHHHHHHHHHHcCChh
Q 004279 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KT-PLGTPTYNTVLHSLVEAQESH 526 (764)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~ 526 (764)
+.--|.+.++++.|.++|.+. .. +.|+...+-+.-..-..+.+.
T Consensus 386 ----------------------------------lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 386 ----------------------------------LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred ----------------------------------HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhH
Confidence 112355556666666666553 22 233445554444444456666
Q ss_pred HHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004279 527 RAMEIFKQMKTC----G--IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600 (764)
Q Consensus 527 ~A~~l~~~m~~~----g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 600 (764)
+|..+|+..... + ..-...+++.|-.+|.+.+.+++|...++...... +-+..++.++.-.|...|+++.|.+
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH
Confidence 666666655411 0 00123345555556666666666666666555542 3355556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH
Q 004279 601 LLDLVSLEGIPHDVLLYNTILK 622 (764)
Q Consensus 601 ~~~~m~~~~~~p~~~~~~~li~ 622 (764)
.|.+.+ .++||..+-..++.
T Consensus 511 ~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 511 HFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHH--hcCCccHHHHHHHH
Confidence 666554 44555544444444
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=1.7e-05 Score=83.31 Aligned_cols=314 Identities=11% Similarity=-0.024 Sum_probs=177.5
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhh---CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004279 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCA---RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
.++.+.++.-+......+.+.++.++..+...+. -.++.+++ ++-.....-..|....+.+++.-.
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm--------- 308 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM--------- 308 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH---------
Confidence 4666777777777776666666666665554333 22444444 222222221222222222211110
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004279 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
-.+.++.. ..+.-|...|..|.-++.+.|+++.+.+.|++....-+ -....|..+-..+...|.-..|..+++...+
T Consensus 309 -~~~~k~r~-~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 309 -LLLRKLRL-KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -HHHHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 00111110 11223455666666677777777777777777654322 2445566666666677777777777766665
Q ss_pred cC--CCCHHhHHHHHHHhh-ccCCHHHHHHHHHHHHHhh--hcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004279 222 HY--SLSIFSLRKFVWSFT-RLRDLKSAYETLQHMVALA--MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 222 ~~--~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.. ++|+..+...-..|. +.+..++++.+-.++.... ..... . ...|
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l-~----------------------------~~~~ 436 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL-K----------------------------PRGY 436 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh-h----------------------------hhHH
Confidence 32 444444444444444 3355555555555554411 11110 0 0234
Q ss_pred HHHHHHHHcc-----------CCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchh
Q 004279 297 SDVIHACGRT-----------QNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 297 ~~li~~~~~~-----------g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 364 (764)
..+.-+|... ....++++.+++..+.+ -.|++.-|-+ --++..++++.|.+..++..+.+..-+..
T Consensus 437 l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 437 LFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 3443333321 22457888888887765 2333333333 34667889999999999999987777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 365 TIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.+..|.-.+...+++.+|+.+.+...... |-.....-+..-...++.++++.....+..
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 89888888999999999999998876552 222222223344457888888888887765
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.6e-06 Score=83.53 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=114.0
Q ss_pred HHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHH--cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 004279 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE--AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560 (764)
Q Consensus 483 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 560 (764)
++.+|. +..+.+.++-...........+.+++....+ ...+.+|.+++...-+....-.....-.++......|++
T Consensus 315 lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 315 LLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 444443 3344455544443222223344444443322 234777888887776653222234555666677888999
Q ss_pred hHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHH
Q 004279 561 KSASALVS--------MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE--GIPHDVL----LYNTILKKACE 626 (764)
Q Consensus 561 ~~a~~~~~--------~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~ 626 (764)
+.|.+++. .+.+.+..|. +...++..+.+.++.+-|..++.+...- .-.+... ++.-+...-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999998 5555555554 4556777888888777777776665421 1122223 33333444457
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004279 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
+|+-++|..+++++.+. ..+|..+...++.+|++. +.+.|..+-+.+
T Consensus 471 ~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 89999999999999963 356788888888888876 366666655544
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=2e-08 Score=109.63 Aligned_cols=183 Identities=8% Similarity=-0.112 Sum_probs=94.2
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhh---------CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004279 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCA---------RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
.+++|+.+|++..+.. |-+...|..+..++. ..++++.|...+++..+.+ +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3456666666666544 112223333322221 1233556666666666654 3345555556566666666
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
+++|...|++..+.+ +.+...+..+...+...|++++|+..++...+..+. +...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 666666666665432 222335555666666666666666666666654322 11122222333444555666666665
Q ss_pred HHHccCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004279 218 DYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 218 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
+..+..+| ++..+..+..++...|+.++|...+.++.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55544322 33445555555556666666666655544
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=3e-08 Score=96.16 Aligned_cols=131 Identities=15% Similarity=0.023 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004279 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
....+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 34455666666666666777666666664432 223445555666666666666666666665554321 233344444
Q ss_pred HHHHhccChhHHHHHHHHHHcc--CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004279 201 KLAVWQKNLSAVHEIWEDYIKH--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
..+...|++++|.+.++...+. .+.....+..+..++...|+++.|...|++..
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444445555555544444432 11222233333444444444444444444443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=3.9e-08 Score=107.31 Aligned_cols=244 Identities=10% Similarity=-0.016 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHh---------ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004279 137 YLEEASNLIYFLGERYGIYPI-LPVYNSFLGACA---------KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
++++|..+|++..+.+ |+ ...|..+..+|. ..+++++|...+++..+..+. +..++..+-..+...
T Consensus 276 ~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 4567777777776443 33 234444443332 224467777777777765422 455566666666677
Q ss_pred cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcc
Q 004279 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
|++++|...+++..+..|.+...+..+..++...|++++|...+++..+ ..|+.+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~----------------------- 406 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRA----------------------- 406 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCh-----------------------
Confidence 7777777777777777677777777777777777777777777777776 444431
Q ss_pred cchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhH
Q 004279 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 365 (764)
..+..++..+...|++++|...+++..... .|+. ..+..+..++...|+.++|...+..+...... +...
T Consensus 407 -------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~ 477 (553)
T PRK12370 407 -------AAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIA 477 (553)
T ss_pred -------hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHH
Confidence 122233444555677777777777766542 2333 23455556666777777777777776544221 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 366 IATLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.+.+...|...| +.|...++.+.+.. ....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 344445556555 35555555554422 11222 23334444555555555 55554
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.8e-08 Score=93.72 Aligned_cols=226 Identities=9% Similarity=-0.052 Sum_probs=136.2
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004279 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+...|.+.|-+.+|...|+.-.+. .|-++||..|-++|.+...+..|+.++.+-+.. ++-|+....-+.+.+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 445566667777777777666554 356666766777777777777777766666554 23344444555666666677
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.++|.+++....+..+ .++.....+..+|.-.++++-|+..|+++.+-|+. +...|..+--+|.-.+.++-++..|.
T Consensus 306 ~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777776654432 24445555555666667777777777777776655 55556665555666666666666666
Q ss_pred HHHcc---CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004279 218 DYIKH---YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 218 ~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
..... ...-..+|..+.......||+..|.+.|.-....+-... .
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~--------------------------------e 430 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG--------------------------------E 430 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH--------------------------------H
Confidence 66543 222234566666666666666666666666554221111 3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
++|.|.-.-.+.|++++|..++.....
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666666666666666666666665544
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=6.9e-06 Score=86.65 Aligned_cols=305 Identities=12% Similarity=-0.006 Sum_probs=185.8
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhh-hHHHHHHHhc-
Q 004279 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPV-YNSFLGACAK- 170 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~li~~~~~- 170 (764)
....+...|+++.|++.++.-... +.............|.+.|+.++|..++..+.+++ |+... |..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhh
Confidence 334556778888888888764443 34445566777888888888888888888887654 44444 4444444422
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChh-HHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH
Q 004279 171 ----LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 171 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
..+.+....+|+++... -|...+...+.-.+.....+. .+..++....+.. -+.+++.|-..|......+-
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--vPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG--VPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHcChhHHHH
Confidence 23567778888877765 344444433332232212221 2233333333222 33455666666665555555
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004279 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 325 (764)
...++....... ..+.. +.. .............|++.-+...|-..|++++|++++++.++. .
T Consensus 162 i~~l~~~~~~~l-~~~~~--------~~~------~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--t 224 (517)
T PF12569_consen 162 IESLVEEYVNSL-ESNGS--------FSN------GDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--T 224 (517)
T ss_pred HHHHHHHHHHhh-cccCC--------CCC------ccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--C
Confidence 555555554321 11100 000 000111111222267777788888888888888888888876 4
Q ss_pred CCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc-------
Q 004279 326 PSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPK------- 396 (764)
Q Consensus 326 p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~------- 396 (764)
|+. ..|..-.+.+-..|++.+|.+.++..+..+.. |...-+..+..+.++|++++|.+++......+ ++.
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 553 45666677788888888888888888887776 77777788888888888888888888876653 111
Q ss_pred -ch--HHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 397 -PF--SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 397 -~~--~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.| .....+|.+.|++..|+..|..+.+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12 2345667777777777777766643
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.8e-05 Score=80.51 Aligned_cols=478 Identities=12% Similarity=0.033 Sum_probs=254.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004279 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
.+..-+..+..++++++|.....++...+ +-+...+..-+-+..+.+.++.|+.+.+.-.... ..+.+. +=.+||
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc 88 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYC 88 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHH
Confidence 34445666788999999999999999876 4555667777778888899999985544322110 112221 234444
Q ss_pred --ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhccChh
Q 004279 134 --KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA-VWQKNLS 210 (764)
Q Consensus 134 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~ 210 (764)
+.+..++|+..++... + .+..+...=...+-+.|++++|+++|+.+.+.+.. .+...+.+- ...+-..
T Consensus 89 ~Yrlnk~Dealk~~~~~~-~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD-R----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHcccHHHHHHHHhccc-c----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhh
Confidence 7899999999988432 1 23335566667788999999999999999776432 222222211 1100001
Q ss_pred HHHHHHHHHHccCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccch
Q 004279 211 AVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 211 ~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
.+. +.+ .....+. +-..+......+...|++..|+++++...+.+...-. .+.. ..+....
T Consensus 160 ~~~-~~q-~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~------~~d~----------~eEeie~ 221 (652)
T KOG2376|consen 160 QVQ-LLQ-SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE------DEDT----------NEEEIEE 221 (652)
T ss_pred hHH-HHH-hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc------cccc----------chhhHHH
Confidence 111 111 1111221 2223334455677899999999999998553322100 0000 0000001
Q ss_pred hhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH---HHhcCChhHH--HHHHHHHHHCCCCCchh
Q 004279 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA---IVSDRGLRNG--MEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~---~~~~~~~~~a--~~~~~~m~~~~~~~~~~ 364 (764)
.+ ...---|..++-..|+.++|..++...+... .+|........+- +....++... +..++.....
T Consensus 222 el-~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~------- 292 (652)
T KOG2376|consen 222 EL-NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK------- 292 (652)
T ss_pred HH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH-------
Confidence 11 0122234556777899999999999998875 3455333332222 2222222221 1111111100
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCC
Q 004279 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~ 444 (764)
..+.++..|..-... ....-+.++..|.. ..+.+.++..... +..|. +.+.+++..+...
T Consensus 293 -------------l~~~~l~~Ls~~qk~-~i~~N~~lL~l~tn--k~~q~r~~~a~lp-~~~p~-~~~~~ll~~~t~~-- 352 (652)
T KOG2376|consen 293 -------------LAEFLLSKLSKKQKQ-AIYRNNALLALFTN--KMDQVRELSASLP-GMSPE-SLFPILLQEATKV-- 352 (652)
T ss_pred -------------hHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hHHHHHHHHHhCC-ccCch-HHHHHHHHHHHHH--
Confidence 001111111111110 11111233333332 2233333322221 22232 2333333322111
Q ss_pred chhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHh---cCCCCChhhHHHHHHHHHH
Q 004279 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVE 521 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~li~~~~~ 521 (764)
+......+.+++.. ..+....++--.++.....
T Consensus 353 --------------------------------------------~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 353 --------------------------------------------REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred --------------------------------------------HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 00011222222221 1122223455556677788
Q ss_pred cCChhHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC--CCCCCHH----HHHHHHH
Q 004279 522 AQESHRAMEIFK--------QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTM----TYTALIK 587 (764)
Q Consensus 522 ~~~~~~A~~l~~--------~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~p~~~----~~~~li~ 587 (764)
.|+++.|++++. .+.+.+..|-. ...+...+.+.++-+.|-.++...+.. .-.+... ++.-+..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 899999999888 55665555544 445666677777777788887776642 1112222 3333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004279 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
.-.+.|+.++|..+++++.... ++|..+...++.+|++. +.+.|+.+-..+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 4467899999999999998643 67888999999999877 778887765543
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=5.8e-07 Score=94.62 Aligned_cols=97 Identities=7% Similarity=0.081 Sum_probs=47.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhH--------H
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST--------I 366 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--------~ 366 (764)
.|..-.+.+-+.|++++|.+.++..++... -|...-+-....+.+.|++++|.+++....+.+..|-... .
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 444455555555555555555555554432 1333334444444555555555555555544433221111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004279 367 ATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~ 392 (764)
.....+|.+.|++..|++.|..+.+.
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 23445666667666666666655543
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.97 E-value=2e-05 Score=81.71 Aligned_cols=400 Identities=10% Similarity=0.040 Sum_probs=190.8
Q ss_pred CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHH
Q 004279 101 PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 180 (764)
..+..|+.+++.+.... .-...|..+...|+..|+++.|.++|.+.. .++--|..|.++|+++.|.++
T Consensus 746 kew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHH
Confidence 33444444444444332 122234455555555555555555554321 234455555666666655555
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcc
Q 004279 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260 (764)
Q Consensus 181 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 260 (764)
-.+.. |+......|-+-..-.-..|.+.+|+++|-.+. .|+ ..|.+|-+.|..+..+++.++-- |
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~-----~aiqmydk~~~~ddmirlv~k~h-----~ 878 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPD-----KAIQMYDKHGLDDDMIRLVEKHH-----G 878 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---Cch-----HHHHHHHhhCcchHHHHHHHHhC-----h
Confidence 44332 223333334333333444555555555443221 111 12334444454444444433321 1
Q ss_pred cchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 004279 261 KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340 (764)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 340 (764)
+ ....|.-.+..-+-..|+...|..-|-+..+ |.+.++.|-.
T Consensus 879 d-----------------------------~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~ 920 (1636)
T KOG3616|consen 879 D-----------------------------HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKA 920 (1636)
T ss_pred h-----------------------------hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhh
Confidence 1 1112444555666667777777666644332 3444455555
Q ss_pred cCChhHHHHHHHH--------------HHHCCCCCchhH------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHH
Q 004279 341 DRGLRNGMEVLKI--------------MQQNNLKPQDST------IATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400 (764)
Q Consensus 341 ~~~~~~a~~~~~~--------------m~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 400 (764)
.+-|++|.++-+. ....|-..-+.. ...-++..+..+.++-|.++-+-..+.......-.
T Consensus 921 s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk 1000 (1636)
T KOG3616|consen 921 SELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLK 1000 (1636)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhH
Confidence 5555555444221 111111100001 11223333444555555555444333323333344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHH
Q 004279 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 401 li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
+...+-..|++++|.+-|-+..+ . .||++-- |..... .+.....+.|.+|..
T Consensus 1001 ~a~~ledegk~edaskhyveaik---l--ntynitw--cqavps------------------rfd~e~ir~gnkpe~--- 1052 (1636)
T KOG3616|consen 1001 LAMFLEDEGKFEDASKHYVEAIK---L--NTYNITW--CQAVPS------------------RFDAEFIRAGNKPEE--- 1052 (1636)
T ss_pred HhhhhhhccchhhhhHhhHHHhh---c--ccccchh--hhcccc------------------hhhHHHHHcCCChHH---
Confidence 44556667888888777766654 1 1222111 110000 011234556666643
Q ss_pred HHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 004279 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560 (764)
Q Consensus 481 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 560 (764)
-+.++.+..++..|.++-+..-...-...|+--..+-...|++.+|..++-+.. +|+. .++.|...+.|
T Consensus 1053 --av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw 1121 (1636)
T KOG3616|consen 1053 --AVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELW 1121 (1636)
T ss_pred --HHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccC
Confidence 346788888999888887654222222344444455556677777776654433 4553 34555556666
Q ss_pred hHHHHHHHHH------------H----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004279 561 KSASALVSMM------------V----RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 561 ~~a~~~~~~~------------~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
..|+++-+.. . +.| ...+..|..-..-+-+.|++.+|...+-++
T Consensus 1122 ~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1122 PDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred hHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 6665554322 1 122 223445555566667777877777766554
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.4e-07 Score=89.01 Aligned_cols=282 Identities=12% Similarity=0.017 Sum_probs=222.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004279 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
++...-.-..-+-..+++.+..++++.+.+.++..++ .+..-|..+...|+..+-..+=..+.+.- +-...+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~--~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP--CLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc--hHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 3444445556667789999999999999888765555 66666778888999888888888888763 33678999999
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCC
Q 004279 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
.-|...|..++|.+.|.+...-.+.-...|-.+.+.|+-.|..+.|+..+....+ .-|....+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP--------------- 382 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLP--------------- 382 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcch---------------
Confidence 9899999999999999999877777778899999999999999999999998877 22222100
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 004279 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN--- 357 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--- 357 (764)
..| +.--|.+.++.+.|.+.|.+..... +-|+..++-+--..-..+.+.+|..+|+.....
T Consensus 383 -------------~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 383 -------------SLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred -------------HHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 133 4456788999999999999987653 335666666666666788999999999887631
Q ss_pred -C--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhH
Q 004279 358 -N--LKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY 432 (764)
Q Consensus 358 -~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~ 432 (764)
+ ..-...+++.|...|.+.+..++|+..++...... +..++.++.-.|...|+++.|.+.|.+-.. +.||..+.
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~-l~p~n~~~ 525 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA-LKPDNIFI 525 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh-cCCccHHH
Confidence 1 11256678899999999999999999999976543 888899999999999999999999998775 88999888
Q ss_pred HHHHHHh
Q 004279 433 ELLFSLF 439 (764)
Q Consensus 433 ~~ll~~~ 439 (764)
..++..+
T Consensus 526 ~~lL~~a 532 (611)
T KOG1173|consen 526 SELLKLA 532 (611)
T ss_pred HHHHHHH
Confidence 8887644
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.94 E-value=2.8e-07 Score=95.66 Aligned_cols=241 Identities=12% Similarity=0.015 Sum_probs=172.0
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHc-----C-ccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhhh----cC-C
Q 004279 87 ADDFFHILNYCARSPDPLFVMETWRMMEEK-----E-IGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGER----YG-I 154 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~ 154 (764)
..+...+...|...|+++.|..+++..++. | ..|.+. ..+.+...|...+++++|..+|+++..- .| .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999988765 2 134444 3445778899999999999999987531 11 1
Q ss_pred CCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHHhccChhHHHHHHHHHHcc----
Q 004279 155 YPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR-----MV-GKNEV-TYTELLKLAVWQKNLSAVHEIWEDYIKH---- 222 (764)
Q Consensus 155 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 222 (764)
.|. ..+++.|...|.+.|++++|...++...+- |. .|... -++.+...|...+++++|..++....+-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 247888888999999999998888776442 21 22333 3455666788899999999999887762
Q ss_pred CCCC----HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcc----cchhcccccccccccccCCCccCCcccchhhhHh
Q 004279 223 YSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG----KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 223 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
..++ ..+++.|...|.+.|++++|.++|+++....-.. +..+ ..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~----------------------------~~ 410 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV----------------------------GK 410 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh----------------------------hH
Confidence 2333 3589999999999999999999999988643211 1111 14
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCc-ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQS----LGL-QPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~ 355 (764)
.++.+...|.+.++++.|.++|.+-.. .|. .||. .+|..|...|...|+++.|.++...+.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 777888889999999999988877543 221 2232 356777777777777777777776654
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=3.8e-07 Score=81.41 Aligned_cols=205 Identities=15% Similarity=-0.019 Sum_probs=172.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004279 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
+.........+...|...|+...|..-+++..+.+ |-+..++..+...|.+.|+.+.|.+-|++.++.. +-+-.+.|.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNN 108 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhh
Confidence 33445556667888999999999999999999987 3455668888889999999999999999999875 456678999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004279 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
-...+|..|++++|...|++.........-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 999999999999999999998764333333458888998999999999999999999887433 4456778888899999
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++-.|..+++.......++..+.-..|..--..|+.+.+.+.=..+.+
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999988779999999999999999999999887777665
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=0.00018 Score=77.67 Aligned_cols=279 Identities=11% Similarity=0.035 Sum_probs=196.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhccCCCC--cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004279 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLG--ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
....+.+++..+-+.+-+++++++.-.+...+ ....|.|+-...+. +...+.+..+++...+. |+ +....
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~ia 1058 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIA 1058 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHH
Confidence 33456778888889999999998875543332 23345555544443 45567777776655432 22 33445
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004279 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
...+-+++|..+|+... .+....+.||. .-++++.|.+.-+... ....|+.+.++-.+.+.+.+|
T Consensus 1059 i~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 56677899999988652 24445555554 3467788877665543 456788898888888888888
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004279 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
.+-|-+ ..|+..|..+++...+.|.+++-.+.+....+....|.
T Consensus 1124 ieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~------------------------------- 1167 (1666)
T KOG0985|consen 1124 IESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY------------------------------- 1167 (1666)
T ss_pred HHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-------------------------------
Confidence 776654 35778899999999999999999999888887665554
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004279 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
.=+.||-+|++.++..+..+++ .-||......+-+-|...+.++.|.-+|.. .+-|..|...
T Consensus 1168 --id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1168 --IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLAST 1229 (1666)
T ss_pred --chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHH
Confidence 4467899999999987765544 247888888888889999999988887753 4456777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHH
Q 004279 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (764)
+...|+++.|.+.-+... ++.+|..+-.+|...+.+.-
T Consensus 1230 LV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKAN---STKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred HHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhchhhhhH
Confidence 888888888876655544 67788887777776665443
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=9.6e-05 Score=76.81 Aligned_cols=218 Identities=11% Similarity=0.133 Sum_probs=131.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHH
Q 004279 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
..+.+.|+++.|+.-|-+.. ...-.+.+....+.|.+|..+++.++..... ..-|..+.+-|+..|+++
T Consensus 714 ~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHH
Confidence 34455677777766664432 1233456677788899999999888876543 345677888899999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHH
Q 004279 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460 (764)
Q Consensus 381 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 460 (764)
.|+++|.+.. .++-.|..|.+.|+++.|.++-.+... .......|.+--.-+-..|.+.+++.++-.++.
T Consensus 783 ~ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~~-~e~t~~~yiakaedldehgkf~eaeqlyiti~~--- 852 (1636)
T KOG3616|consen 783 IAEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECHG-PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--- 852 (1636)
T ss_pred HHHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhcC-chhHHHHHHHhHHhHHhhcchhhhhheeEEccC---
Confidence 9999987654 356778889999999999888766542 233333443333333333443333333222111
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 004279 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
| ..-|.+|-+.|..++.+++..+.....-..|.-.+..-|-..|+...|.+-|-+..+
T Consensus 853 --------------p-----~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--- 910 (1636)
T KOG3616|consen 853 --------------P-----DKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--- 910 (1636)
T ss_pred --------------c-----hHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---
Confidence 1 124567777777777777766543322233444455556666777777666544322
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHH
Q 004279 541 PPNAATYNIMIDCCSIIRCFKSASALV 567 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~~~~~~a~~~~ 567 (764)
|.+.++.|-.++.|++|.++-
T Consensus 911 ------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 911 ------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ------HHHHHHHhhhhhhHHHHHHHH
Confidence 344455555556666655543
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=0.00013 Score=77.04 Aligned_cols=248 Identities=10% Similarity=0.049 Sum_probs=143.4
Q ss_pred hhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc-
Q 004279 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK- 116 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 116 (764)
|.|-....|+|. ++....-..-|..-|+.+.|.+-.+.+... ..|..+.+.|.+..+.+-|.-.+-.|...
T Consensus 716 rdFvgle~Cd~~--TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aR 787 (1416)
T KOG3617|consen 716 RDFVGLENCDES--TRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNAR 787 (1416)
T ss_pred HHhcCccccCHH--HHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhh
Confidence 444444445444 333222233366678888888777666543 35777888888777777665555444321
Q ss_pred Cc--------cc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004279 117 EI--------GL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 117 ~~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
|. .+ +...--+ -.-...|.+++|+.++.+-+. |..|=+.|-..|.+++|.++-+.--+-
T Consensus 788 gaRAlR~a~q~~~e~eakvA--vLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi 855 (1416)
T KOG3617|consen 788 GARALRRAQQNGEEDEAKVA--VLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI 855 (1416)
T ss_pred hHHHHHHHHhCCcchhhHHH--HHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce
Confidence 10 11 1112112 223456899999999987742 334445566789999999887653332
Q ss_pred CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc----------cCC----------CCHHhHHHHHHHhhccCCHHHHH
Q 004279 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK----------HYS----------LSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~~----------~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
.+ ..||..-..-+...+|.+.|++.|++..- ..+ .|...|.-.....-..|+.+.|+
T Consensus 856 HL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 856 HL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred eh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 22 23555555556667788888777765421 111 23334444444555678888888
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004279 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 327 (764)
.+|.... -|-++++..|-.|+.++|-++-++- -|
T Consensus 933 ~~Y~~A~----------------------------------------D~fs~VrI~C~qGk~~kAa~iA~es------gd 966 (1416)
T KOG3617|consen 933 SFYSSAK----------------------------------------DYFSMVRIKCIQGKTDKAARIAEES------GD 966 (1416)
T ss_pred HHHHHhh----------------------------------------hhhhheeeEeeccCchHHHHHHHhc------cc
Confidence 8888775 3445555566666666666555442 24
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHH
Q 004279 328 SHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 328 ~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
......+.+.|-+.|++.+|..+|...
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444445556666666666666665544
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=6e-07 Score=89.51 Aligned_cols=218 Identities=11% Similarity=-0.081 Sum_probs=132.5
Q ss_pred CCcchHHHHHHHhhhccCCCC----cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004279 66 GERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
+..+.++.-+.++.... +.+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666432 122 2336666667777788888888888887764 44667788888888888888888
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004279 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
...|++..+.+ +-+..+|..+...+...|++++|++.|+...+. .|+..........+...++.++|.+.++....
T Consensus 118 ~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888776532 223456677777777788888888888887765 34332222222223445677888887766554
Q ss_pred cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh-----hcccchhcccccccccccccCCCccCCcccchhhhHhhH
Q 004279 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-----MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
...++...+ .+... ..|+...+ ..+..+.+.. +.|.. ..+|
T Consensus 194 ~~~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~------------------------------~ea~ 239 (296)
T PRK11189 194 KLDKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERL------------------------------CETY 239 (296)
T ss_pred hCCccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHH------------------------------HHHH
Confidence 433333322 22222 23444333 2444443210 01110 1467
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004279 297 SDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 297 ~~li~~~~~~g~~~~a~~~~~~m~~~g 323 (764)
..+...+.+.|++++|...|++..+.+
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777778888888888888888777654
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.88 E-value=1.4e-07 Score=97.82 Aligned_cols=249 Identities=11% Similarity=-0.000 Sum_probs=183.8
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc--
Q 004279 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-- 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-- 81 (764)
|...-++..+...|..+|++++|. ..+.... +......|+...........+...|...+++++|+.+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~-~l~k~Al--~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAE-PLCKQAL--RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHH-HHHHHHH--HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 455567778999999999999999 6665543 44445566555545555666778899999999999999998643
Q ss_pred ---c--CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc-----Cc-cccHH-HHHHHHHHHHccCCHHHHHHHHHHHh
Q 004279 82 ---H--HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK-----EI-GLNNK-CYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 82 ---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
| .+....+++.|..+|.+.|++++|...++...+. |. .|.+. .++.+...++..+++++|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 1222345788888899999999888777776542 21 23333 46677888999999999999988654
Q ss_pred hhcC--CCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhc----CC--CC-ChhhHHHHHHHHHhccChhHHHHHH
Q 004279 150 ERYG--IYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSR----MV--GK-NEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 150 ~~~~--~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+..- ..++. -+++.|...|...|++.+|.++|+..... +- .+ ....++.|-..|.+.+...+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 3221 22222 37899999999999999999999987653 11 22 2346677888899999999999888
Q ss_pred HHHHc---c----CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 217 EDYIK---H----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 217 ~~~~~---~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..... . .+....+|..|..+|...|+++.|.++.+.+..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77653 1 233356899999999999999999999998874
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=0.00019 Score=75.76 Aligned_cols=52 Identities=10% Similarity=-0.052 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHCCCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 004279 629 RIDVIEFIIEQMHQNKVQP----DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 680 (764)
|..+.+.-...|.+.-.-| -...|..|+..+....+|..|.+.+++|.++.-
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 4555555566666543333 234566677888888888888888888877643
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=1.3e-06 Score=87.18 Aligned_cols=39 Identities=5% Similarity=-0.013 Sum_probs=26.5
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHH
Q 004279 396 KPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434 (764)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ 434 (764)
.+|..+...+.+.|++++|+..|++..+.-.||..-+..
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 456777777888888888888888777733345544443
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.84 E-value=0.0003 Score=74.28 Aligned_cols=503 Identities=12% Similarity=0.039 Sum_probs=287.2
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHH---HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004279 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ---ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
..++++.++.-+.....++.+.++.++..+-. .|...|+.+++ .++..+.+ ...|....+.+.+.-
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e--s~i~Re~~~d~ilsl-------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE--SLIPRENIEDAILSL-------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh--hccccccHHHHHHHH--------
Confidence 44666677777777777766666666555433 34455666666 33333321 222332233322211
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.-.+.+++...+.-|...|..+.-+....|+++.+.+.|++......-....|+.+...|...|....|..+++.-..
T Consensus 308 --m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 308 --MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred --HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 112334444445668888888888889999999999999999988777888899999999999999999999988766
Q ss_pred hhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHH-ccCCHHHHHHHHHHHHH--CCC--CCCccc
Q 004279 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG-RTQNSGLAEQLMLQMQS--LGL--QPSSHT 330 (764)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~--~g~--~p~~~t 330 (764)
....|+++ ..+-..-..|. +.+.+++++++-.+... .+. ......
T Consensus 386 ~~~~ps~~------------------------------s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 386 KSEQPSDI------------------------------SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred cccCCCcc------------------------------hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 33334431 12222223333 34667777777666655 111 123344
Q ss_pred HHHHHHHHHhc----C-------ChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCc
Q 004279 331 YDGFIRAIVSD----R-------GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396 (764)
Q Consensus 331 ~~~li~~~~~~----~-------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~ 396 (764)
|..+--+|... . ...++.+.+++..+.+.. |+.+.--+.--|+..++++.|.+...+...-+ ++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 44444444421 1 134577778887776644 33333344446788899999999999887662 888
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhh--ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004279 397 PFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
.|..|.-.+...+++.+|+.+.+.... |. |......-++--...++.+++. +......++++... |
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l------~t~~~~L~~we~~~--~-- 582 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEAL------DTCIHKLALWEAEY--G-- 582 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHH------HHHHHHHHHHHhhh--h--
Confidence 999999999999999999999887665 21 0000000000000011111111 00011111110000 0
Q ss_pred CcHHHHHHHHHHHhccCcHHHHHHHHHhcCC----CCCh-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CCH---
Q 004279 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKT----PLGT-PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP--PNA--- 544 (764)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~--p~~--- 544 (764)
....++-....+.+..+.. ..+. .++..+..-.. -+.+.+..-.. |...-+. |+.
T Consensus 583 ------------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 583 ------------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-LPSSTVLPGPDSLWY 647 (799)
T ss_pred ------------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-cCcccccCCCCchHH
Confidence 0000111111122211111 1111 12222221111 11111100000 2211112 221
Q ss_pred ---HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004279 545 ---ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD-VLLYNTI 620 (764)
Q Consensus 545 ---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 620 (764)
..+......+.+.+..++|...+.+..+. .......|.-....+...|..++|.+.|..... +.|+ +.+..++
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Al 724 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 12344455666778888887777666654 234556666666778888899999999888774 3554 5578888
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHHCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 621 LKKACEKGRIDVIEF--IIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 621 i~~~~~~g~~~~a~~--~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
...+.+.|+...|.. ++..+.+ +.| +...|..+-..+-+.|+.+.|.+.|+.-..
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 888889998777777 8888886 445 456677777788889999999988886443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.83 E-value=2.1e-06 Score=76.79 Aligned_cols=196 Identities=8% Similarity=-0.094 Sum_probs=112.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC
Q 004279 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
.-|.-+|.+.|+...|..-++...+..+. +..+|..+-..|.+.|+.+.|.+.|++..+-.+.+..+.|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 33444556666666666666665554321 33455555555556666666666666666655666666666666666666
Q ss_pred CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004279 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
.+++|...|++... .|.-... ..+|..+.-+..+.|+++.|.+.|++-.+
T Consensus 118 ~~~eA~q~F~~Al~---~P~Y~~~---------------------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 118 RPEEAMQQFERALA---DPAYGEP---------------------------SDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred ChHHHHHHHHHHHh---CCCCCCc---------------------------chhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 66666666666664 2221111 13666666666666777777776666665
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004279 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 322 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 390 (764)
... -...+.-.+.+...+.|++..|..+++.....+. ++....-..|..--+.|+.+.+-+.=.++.
T Consensus 168 ~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 168 LDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred hCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 431 1233445555566666666666666666666555 455555555555555566555554444433
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=5.8e-05 Score=81.40 Aligned_cols=185 Identities=11% Similarity=-0.046 Sum_probs=135.5
Q ss_pred cchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004279 68 RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF 147 (764)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 147 (764)
...|+..|-+..+.++ --...|..|...|....|...|...|....+.+ ..+...+..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5566665555444432 122358888888887778888999999988876 45677888899999999999999998655
Q ss_pred HhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCH
Q 004279 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227 (764)
Q Consensus 148 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 227 (764)
..++.....-...|...--.|.+.++...|..-|+...+..+. |...|..+..+|...|.+..|.++|.++..-.|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 5443322112222333334467889999999999998887544 778899999999999999999999988877666666
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 228 FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..--.....-+..|...+|...+..+..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6655556667788999999988888765
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=6.4e-06 Score=76.18 Aligned_cols=313 Identities=14% Similarity=0.076 Sum_probs=208.2
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH-HHHHHHHccC
Q 004279 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL-LMMQALCKGG 136 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g 136 (764)
.+..+.+..+++.|++++..-.+.. +.+......|..+|-...++..|-+.++++-.. .|...-|. .-...+-+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 3545678889999999998887765 235566777777888889999999999998776 35444443 3356677889
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHH--HH--HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004279 137 YLEEASNLIYFLGERYGIYPILPVYNSFL--GA--CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li--~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
.+.+|+++...|.+. |+ ..+..+ .+ .-..+++..+..+.++....| +..+.+..-....+.|+++.|
T Consensus 93 i~ADALrV~~~~~D~----~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN----PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred ccHHHHHHHHHhcCC----HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 999999999888542 22 222221 11 234688888888888766432 444554444455689999999
Q ss_pred HHHHHHHHcc-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC--cccch
Q 004279 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN--ALPVM 289 (764)
Q Consensus 213 ~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 289 (764)
.+-|....+- .-....+||..+.. .+.++.+.|++...++.++|++...-.+.. +.....+.....+ .+...
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIG----m~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIG----MTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCcc----ceeccCchhcccchHHHHHH
Confidence 9999999873 44445667766544 467899999999999999998866522211 1111111111111 11111
Q ss_pred hhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHH
Q 004279 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 368 (764)
.+ ...+|.-...+.+.|+++.|.+.+..|.-+. -..|++|...+.-.- -.+++....+-+.-+...++-| ..|+..
T Consensus 239 al-~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP-~ETFAN 315 (459)
T KOG4340|consen 239 AL-VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFP-PETFAN 315 (459)
T ss_pred HH-HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCC-hHHHHH
Confidence 11 2455655666778999999999999986443 356777766543221 2455666666667777766644 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 004279 369 LSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 369 li~~~~~~g~~~~A~~~~~~~~ 390 (764)
++-.||+..-++.|-+++.+-.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc
Confidence 8888999988888888876644
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=2.4e-05 Score=81.29 Aligned_cols=194 Identities=7% Similarity=-0.063 Sum_probs=90.4
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCc
Q 004279 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
.+...|++++|.+.++...+..+.+...+..+..++...|++++|...+++..+....+..
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------------------- 183 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM------------------- 183 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc-------------------
Confidence 4445555555555555555554555555555556666666666666666665542111000
Q ss_pred cCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCcccH-H--HHHHHHHhcCChhHHHHH--HHHHH
Q 004279 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPSSHTY-D--GFIRAIVSDRGLRNGMEV--LKIMQ 355 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~-~--~li~~~~~~~~~~~a~~~--~~~m~ 355 (764)
.....|..+...+...|++++|..+|++...... .+..... + .++.-+...|....+.++ +....
T Consensus 184 ---------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~ 254 (355)
T cd05804 184 ---------LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYA 254 (355)
T ss_pred ---------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 0001344555666666666666666666543211 0111100 1 112222223322222222 11111
Q ss_pred HCCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----------CCcchHHHHHHHhcCCCHHHHHHHHHHHh
Q 004279 356 QNNLK--PQDSTIATLSVECSKALELDLAEALLDQISRCT-----------NPKPFSAFLAACDTMDKPERAIKIFAKMR 422 (764)
Q Consensus 356 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 422 (764)
..... ...........++...|+.+.|..+++.+.... .+...-....++...|++++|.+++.+..
T Consensus 255 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 255 AWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10000 011111245556666777777777777665421 11111122234567888888888887765
Q ss_pred h
Q 004279 423 Q 423 (764)
Q Consensus 423 ~ 423 (764)
.
T Consensus 335 ~ 335 (355)
T cd05804 335 D 335 (355)
T ss_pred H
Confidence 4
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.8e-05 Score=73.87 Aligned_cols=268 Identities=10% Similarity=0.011 Sum_probs=188.2
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 004279 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
++-|+.....+...+...|+.++|+..|+...- +.|+.. ....-.-.+.+.|+.+....+...+.... .-+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 455777788888888888888888888887642 233322 11112222456777777777766665431 1122233
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004279 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
-.-.+..-..++++.|..+-++.+...+.+...|-.=..++...++++.|.-.|..... +.|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~r-------------- 367 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYR-------------- 367 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhh--------------
Confidence 33334445677888888888888887888888888878888899999999999988876 55554
Q ss_pred cCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHH-HHHH-hcCChhHHHHHHHHH
Q 004279 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI-RAIV-SDRGLRNGMEVLKIM 354 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~-~~~~~~~a~~~~~~m 354 (764)
..+|.-|+.+|...|++.+|.-+-+..... ..-+..+.+.+- ..|. ....-++|..+++.-
T Consensus 368 ----------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 368 ----------------LEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred ----------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 159999999999999999988776664432 122444544442 2222 233447788888877
Q ss_pred HHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
....+. -....+.+...+...|..+++..+++...... |....+.|...+...+.+.+|++.|.....
T Consensus 431 L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 431 LKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 665432 23446677888999999999999999876554 888899999999999999999999988776
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=0.00069 Score=73.51 Aligned_cols=380 Identities=9% Similarity=0.009 Sum_probs=200.8
Q ss_pred hhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC-CCC
Q 004279 8 TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH-SLG 86 (764)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 86 (764)
+.+..+...|+..-....|. +-|.....++|.. ...+-.....|++..+|+.|..+.-..-+... ..-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~----------kCf~KAFeLDatd-aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAK----------KCFDKAFELDATD-AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHhcCCchh-hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 34444555555544555555 4444556666653 44455567778888999998887333222210 011
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004279 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
..-+....-.+...++...++.-|+...+.+ +.|...|..+..+|..+|++..|.++|++... +.|+. +|.....
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~ 636 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKE 636 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHH
Confidence 1223334456667788888888888887765 45777899999999999999999999987753 34442 3333322
Q ss_pred --HHhccCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHHhccChhHHHHHHHHH-------HccC-CCCHHhH
Q 004279 167 --ACAKLHSMVHANLCLDLMDSR------MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-------IKHY-SLSIFSL 230 (764)
Q Consensus 167 --~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~ 230 (764)
..+..|.+.+|+..++..... +..--..++..+...+...|-..++..+++.- ..+. ..+...|
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 235568899998888876543 11111223333333333333333333333332 2222 3333444
Q ss_pred HHHHHHhhccCCHH--H----HHHHH-HHHHHhhhcccch---hcccccccccccccCCCccCCcccchhhhHhhHHHHH
Q 004279 231 RKFVWSFTRLRDLK--S----AYETL-QHMVALAMMGKLY---INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 231 ~~li~~~~~~g~~~--~----A~~~~-~~m~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
-.+.++|.-.-..+ . -..+| .+....+.-++.. ++.. ++...-..... ..+|..+.
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~-c~~~hlsl~~~-------------~~~WyNLG 782 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYE-CGIAHLSLAIH-------------MYPWYNLG 782 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHH-HhhHHHHHhhc-------------cchHHHHh
Confidence 44333322111110 0 01111 1122212221110 0000 11000000000 14566665
Q ss_pred HHHHc----c---C-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004279 301 HACGR----T---Q-NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 301 ~~~~~----~---g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
..|.+ . + +...|...+..-++. ..+...+...+......|++.-+...|-.-...... ...+|..+...
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheecccee
Confidence 55544 1 1 223566666666553 234443444444446667777777766665555443 45566667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHH
Q 004279 373 CSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAK 420 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~ 420 (764)
+.+..+++.|...|....... +...|--....--..|+.-++..+|..
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 788888888888888877653 555565544445556777777777766
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=2.8e-05 Score=80.75 Aligned_cols=310 Identities=9% Similarity=-0.029 Sum_probs=175.7
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhh-h-HHHHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 004279 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEES-I-SKATQMQIVDALCRGERSRASHLLLNLGHA 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~-~-~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~ 81 (764)
|+....+..++..+...|+.+++. ..+.+ .....|.. + ..........+...|++++|...+++..+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAA-AKAAA---------AAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHH-HHHHH---------HHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455556666777777778888875 22221 12111211 1 111222234466789999999999998876
Q ss_pred cCCCCcchHHH---HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh
Q 004279 82 HHSLGADDFFH---ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158 (764)
Q Consensus 82 ~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 158 (764)
. |.+...+.. ........+....+.+.++. .....+........+...+...|++++|...+++..+.. +.+.
T Consensus 73 ~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~ 148 (355)
T cd05804 73 Y-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDA 148 (355)
T ss_pred C-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCc
Confidence 4 333333331 11111223445555555544 111122233445566678889999999999999987643 3445
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCh--hhHHHHHHHHHhccChhHHHHHHHHHHccCC--CCHHhH-H-
Q 004279 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNE--VTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LSIFSL-R- 231 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-~- 231 (764)
..+..+...+...|++++|...++........ |+. ..|..+...+...|++++|..+++......+ +..... +
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 67788888999999999999999988765322 232 2344677778899999999999999864322 222211 1
Q ss_pred -HHHHHhhccCCHHHHHHHHHHHHHhhhc--ccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004279 232 -KFVWSFTRLRDLKSAYETLQHMVALAMM--GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 232 -~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
.++.-+...|..+.+.++ +.+...... +... . .........++...|+
T Consensus 229 ~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~-~---------------------------~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHG-L---------------------------AFNDLHAALALAGAGD 279 (355)
T ss_pred HHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCccc-c---------------------------hHHHHHHHHHHhcCCC
Confidence 233334444443333333 222211100 1000 0 0122356777888999
Q ss_pred HHHHHHHHHHHHHCCCCC--C----cccHHHHHHH--HHhcCChhHHHHHHHHHHH
Q 004279 309 SGLAEQLMLQMQSLGLQP--S----SHTYDGFIRA--IVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p--~----~~t~~~li~~--~~~~~~~~~a~~~~~~m~~ 356 (764)
.+.|..+++.+......+ . ..+-..++.+ +...|+.+.|.+.+.....
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999887633221 0 0111222222 3366777777777766654
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=1.5e-06 Score=85.10 Aligned_cols=252 Identities=14% Similarity=0.068 Sum_probs=166.1
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH
Q 004279 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI 93 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (764)
++-+.=.|.+..++ ..+. +.+..|+........+.+++...|+.+.++ .++.... +|.......+
T Consensus 8 vrn~fy~G~Y~~~i----------~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~l 72 (290)
T PF04733_consen 8 VRNQFYLGNYQQCI----------NEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLL 72 (290)
T ss_dssp HHHHHCTT-HHHHC----------HHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHH
T ss_pred HHHHHHhhhHHHHH----------HHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHH
Confidence 34455567777777 2222 123345545555556788899999877554 4443333 4666556555
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCcc-ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004279 94 LNYCARSPDPLFVMETWRMMEEKEIG-LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
...+....+-+.++.-++........ .+..........+...|++++|+++++.. .+.......+..|.+.+
T Consensus 73 a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~ 145 (290)
T PF04733_consen 73 AEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMN 145 (290)
T ss_dssp HHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT
T ss_pred HHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcC
Confidence 55555445555566555554444333 34444444456677899999999988643 24556777889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHH
Q 004279 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAV----WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
+++.|.+.++.|.+. ..| .+...+..++. ....+.+|.-+|+++...+++++.+.+.+..++...|++++|.+
T Consensus 146 R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 146 RPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp -HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999975 334 44444544443 23468999999999998889999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCH-HHHHHHHHHHHHC
Q 004279 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS-GLAEQLMLQMQSL 322 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 322 (764)
++.+..+ ..|..+ .+...++-+....|+. +.+.+.+.++...
T Consensus 223 ~L~~al~--~~~~~~------------------------------d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 223 LLEEALE--KDPNDP------------------------------DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCC--C-CCHH------------------------------HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHH--hccCCH------------------------------HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999765 333331 3666677777777777 6777888888764
No 96
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=0.00067 Score=66.23 Aligned_cols=290 Identities=14% Similarity=0.058 Sum_probs=161.8
Q ss_pred HccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHH
Q 004279 304 GRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382 (764)
Q Consensus 304 ~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 382 (764)
+..++...+..++-.+.... ++-|++....+.+.+...|+..++...|+..+..++- +..........+.+.|+.+..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 33455555555554444333 3334556677777777788888888888777654321 111122233334566666666
Q ss_pred HHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHH
Q 004279 383 EALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460 (764)
Q Consensus 383 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 460 (764)
..+...+.... ....|-.-........+++.|+.+-++-.+ +.|+. .-.+|
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-~~~r~--~~ali------------------------ 338 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID-SEPRN--HEALI------------------------ 338 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-cCccc--chHHH------------------------
Confidence 66666554431 233344444444555666666666655543 11111 11110
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 004279 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538 (764)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~ 538 (764)
.--..+...++.++|.-.|+... .+-+..+|.-|+..|...|++.+|+-+-++..+.
T Consensus 339 ---------------------lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 339 ---------------------LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred ---------------------hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 01122344566666666665531 2335667888888888888888777776654443
Q ss_pred CCCCCHHHHHHHH-HHHH-ccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004279 539 GIPPNAATYNIMI-DCCS-IIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 539 g~~p~~~t~~~ll-~~~~-~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
+..+..+.+.+- ..|. ....-++|..+++.-.+. .|+ ....+.+...+...|..++++.++++... ..||..
T Consensus 398 -~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~ 472 (564)
T KOG1174|consen 398 -FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVN 472 (564)
T ss_pred -hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccH
Confidence 223444443331 2222 222345677777666553 344 23445566667777777777777777663 367777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004279 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
..+.|.+.+...+.+++|.+.|...+. +.|+.
T Consensus 473 LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 473 LHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 777777777777777777777777764 44544
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.1e-08 Score=60.06 Aligned_cols=32 Identities=38% Similarity=0.572 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004279 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 574 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.00031 Score=65.33 Aligned_cols=348 Identities=11% Similarity=0.058 Sum_probs=181.9
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004279 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
++++..+.+..+++.|.+++....+..+.+....+.|..+|....++..|-..++++.. ..|..
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~-------------- 77 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPEL-------------- 77 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHH--------------
Confidence 33444444444455555554444444444445555555556666666666666666554 22221
Q ss_pred cCCCccCCcccchhhhHhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH--HhcCChhHHHHHHHH
Q 004279 277 LDIPIPLNALPVMKVLRWSFS-DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI--VSDRGLRNGMEVLKI 353 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~--~~~~~~~~a~~~~~~ 353 (764)
.-|. --...+.+.+.+..|+.+...|... |+...-..-+.+. ...+++..+..+.++
T Consensus 78 -----------------~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 78 -----------------EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred -----------------HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHh
Confidence 0111 0123445566677777777776542 2222222222222 246677777777766
Q ss_pred HHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCH
Q 004279 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDI 429 (764)
Q Consensus 354 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~ 429 (764)
....| +..+.+...-...+.|+.+.|.+-|+...+-+ ....||..+ +..+.+++..|++...++.+ |++-.+
T Consensus 138 lp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 138 LPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred ccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 65332 33334444444567788888888888776654 455566544 44456888888888888887 654322
Q ss_pred HhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCC---
Q 004279 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP--- 506 (764)
Q Consensus 430 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 506 (764)
..- .|...+... .+.++....+ ..+++ ...+|.-...+.+.++++.|.+.+-+|.++
T Consensus 214 Elg---------IGm~tegiD-vrsvgNt~~l-------h~Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 214 ELG---------IGMTTEGID-VRSVGNTLVL-------HQSAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred ccC---------ccceeccCc-hhcccchHHH-------HHHHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 110 000000000 0000000000 00000 122333344567889999999999888543
Q ss_pred -CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHHHHHH
Q 004279 507 -LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTA 584 (764)
Q Consensus 507 -~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~ 584 (764)
.|.+|...+.-. -..+++.+..+-+.-+.+.+. -...||..++-.||+..-++.|-.++.+-...-+ -.+...|+.
T Consensus 274 elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L 351 (459)
T KOG4340|consen 274 ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL 351 (459)
T ss_pred cCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH
Confidence 355555443221 123556566655565665543 3457888888899999888888888765332211 134445553
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004279 585 LIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~ 606 (764)
|=......-..++|.+-++.+.
T Consensus 352 LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 3222233446677776665543
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=8.9e-08 Score=58.97 Aligned_cols=32 Identities=34% Similarity=0.654 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004279 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 609 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.56 E-value=6.9e-05 Score=70.97 Aligned_cols=305 Identities=11% Similarity=0.009 Sum_probs=201.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHH---HHHhhCCCChhHHHHHHHHHHHcCccccHH-HHHHHHHHH
Q 004279 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI---LNYCARSPDPLFVMETWRMMEEKEIGLNNK-CYLLMMQAL 132 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~ 132 (764)
-+...+...|++..|+..|....+.+ +..|.++ ...|...|....|+.=+...++. .||-. ....-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 44677888899999999998887643 4444444 45777788888888888888876 56644 334456678
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHH
Q 004279 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
.++|.++.|..-|+...+.+ |+. +....++.+.--.++-.. ....+..+...||...|
T Consensus 117 lK~Gele~A~~DF~~vl~~~---~s~---~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE---PSN---GLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC---CCc---chhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence 89999999999999887542 321 122222222211122111 12233445567888888
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004279 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
+++...+.+-.+.|...|..-..+|...|++..|+.=+....+ +..|.
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~Dn------------------------------ 222 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASK--LSQDN------------------------------ 222 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccc------------------------------
Confidence 8888888888888888888888888888888888777666665 33322
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHH----HH---------HHHHHhcCChhHHHHHHHHHHHCCC
Q 004279 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD----GF---------IRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~----~l---------i~~~~~~~~~~~a~~~~~~m~~~~~ 359 (764)
+.++--+-..+...|+.+.++...++-.+. .||...+- .| +......++|.++.+-.+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 124444555566677777777777776654 45543221 11 2223456777888888888777665
Q ss_pred CCchhHHH---HHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 360 KPQDSTIA---TLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 360 ~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
......++ .+-.++...+++.+|++.-.++.+.. |+.++---..+|.-...++.|+.-|+...+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 53344444 45566777788999998888877653 455555556778888888999888888776
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=0.00019 Score=84.94 Aligned_cols=338 Identities=10% Similarity=-0.067 Sum_probs=212.2
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcC--c----ccc--HHHHHHHHH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--I----GLN--NKCYLLMMQ 130 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~li~ 130 (764)
.......|+++.+...++.+.......++.........+...|+++++...++.....- . .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 34455678888877777776432212233333344445556789999999888775431 0 111 112223334
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC---ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC---C--ChhhHHHHHHH
Q 004279 131 ALCKGGYLEEASNLIYFLGERYGIYP---ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG---K--NEVTYTELLKL 202 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~t~~~ll~~ 202 (764)
.+...|++++|...+++..+...... .....+.+...+...|++++|...+++.....-. + ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 56688999999999998754221111 1124456666778899999999999887643111 1 12344455566
Q ss_pred HHhccChhHHHHHHHHHHcc----CCC----CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004279 203 AVWQKNLSAVHEIWEDYIKH----YSL----SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
+...|+++.|...++..... ..+ ....+..+...+...|+++.|...+.+...........
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----------- 609 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ----------- 609 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-----------
Confidence 78899999999998887652 111 23345556667778899999999998876532111000
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CcccH-----HHHHHHHHhcCChhHHH
Q 004279 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP-SSHTY-----DGFIRAIVSDRGLRNGM 348 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~-----~~li~~~~~~~~~~~a~ 348 (764)
.....+..+...+...|+++.|...+.+........ ....+ ...+..+...|+.+.|.
T Consensus 610 ----------------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 610 ----------------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 001356667778889999999999998875421111 11111 11223445678899999
Q ss_pred HHHHHHHHCCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCcchHHHHHHHhcCCCHHHHHHH
Q 004279 349 EVLKIMQQNNLKPQD---STIATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 349 ~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~l 417 (764)
.++............ .....+...+...|+.++|...+.+..... ...+...+..++.+.|+.++|...
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 674 NWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887775542221111 113456777889999999999998876531 123455566778899999999999
Q ss_pred HHHHhh
Q 004279 418 FAKMRQ 423 (764)
Q Consensus 418 ~~~m~~ 423 (764)
+.+..+
T Consensus 754 L~~Al~ 759 (903)
T PRK04841 754 LLEALK 759 (903)
T ss_pred HHHHHH
Confidence 999877
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.8e-05 Score=80.43 Aligned_cols=222 Identities=9% Similarity=0.007 Sum_probs=173.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+.++|+..+|.-.|+...+.+ |-+...|-.|...-+.+++-..|+..+++-.+.+ +-|....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 556788999999999999988876 4566778888888888888888999999998885 55777888899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHH-----------HHHhccCCHHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhc
Q 004279 139 EEASNLIYFLGERYGIYPILPVYNSFL-----------GACAKLHSMVHANLCLDLMDS-RMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+|.+.|+...... | .|..+. +.+.....+....++|-++.. .+..+|......|--.|--.
T Consensus 370 ~~Al~~L~~Wi~~~---p---~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK---P---KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHhC---c---cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999998775421 0 111111 122223344556666666544 45446777777777778889
Q ss_pred cChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcc
Q 004279 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
|++++|...|+.+....|.|...||.|...++...+.++|+..|.+.++ ++|.-
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~y------------------------ 497 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGY------------------------ 497 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCe------------------------
Confidence 9999999999999999999999999999999999999999999999998 66654
Q ss_pred cchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004279 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
..++..|.-+|...|.+++|.+.|-..+
T Consensus 498 ------VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 498 ------VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ------eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 1356677778899999999998887654
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.49 E-value=8.8e-06 Score=79.82 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCH-HHHHHH
Q 004279 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL-DLAEAL 385 (764)
Q Consensus 307 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~ 385 (764)
.++..|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+....+.. +..+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3455666666665433 2344455555555555556666666655555544333 334444444444444444 444444
Q ss_pred HHHHh
Q 004279 386 LDQIS 390 (764)
Q Consensus 386 ~~~~~ 390 (764)
+.++.
T Consensus 259 l~qL~ 263 (290)
T PF04733_consen 259 LSQLK 263 (290)
T ss_dssp HHHCH
T ss_pred HHHHH
Confidence 44444
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=3.3e-05 Score=86.09 Aligned_cols=234 Identities=11% Similarity=0.031 Sum_probs=176.5
Q ss_pred cchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc-cCCC---CcchHHHHHHHh
Q 004279 22 FHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-HHSL---GADDFFHILNYC 97 (764)
Q Consensus 22 ~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~ 97 (764)
+.+++.+..-++-+....|...+-..|. .+-.|...|......++.+.|.+++++.... +++- -.+.|.++++.-
T Consensus 1429 ~~~~e~~dl~~~pesaeDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE 1507 (1710)
T KOG1070|consen 1429 RSDEEERDLSRAPESAEDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE 1507 (1710)
T ss_pred ccchhhcccccCCcCHHHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH
Confidence 3344443333233344555555555565 3566777788888999999999999987643 2111 123466666666
Q ss_pred hCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHH
Q 004279 98 ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 177 (764)
..-|.-+...++|+++.+.- ..-..|..|...|.+.+++++|.++|+.|.++.+. ...+|...+..+.++.+-+.|
T Consensus 1508 n~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1508 NAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred HhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHH
Confidence 66677788999999998863 22346889999999999999999999999988873 455899999999999999999
Q ss_pred HHHHHHHHhcCCCCCh---hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004279 178 NLCLDLMDSRMVGKNE---VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 178 ~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
..++.+..+. -|.. ....-....-.+.||.+.+..+|+......|--...|+..++.-.+.|+.+.+..+|+++.
T Consensus 1584 ~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1584 RELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999998875 3331 1222233334578999999999999999888889999999999999999999999999999
Q ss_pred Hhhhcccc
Q 004279 255 ALAMMGKL 262 (764)
Q Consensus 255 ~~~~~~~~ 262 (764)
..++.+..
T Consensus 1662 ~l~l~~kk 1669 (1710)
T KOG1070|consen 1662 ELKLSIKK 1669 (1710)
T ss_pred hcCCChhH
Confidence 87777654
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.0015 Score=66.38 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=126.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCC
Q 004279 367 ATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~ 444 (764)
..+.++.-+..+++.|.+-++...... +..-++..-.+|...|.+.+.......-.+ |.. ...-|+.+-.++
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~----- 301 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL----- 301 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH-----
Confidence 345555556666777766666655442 333345555667777776666655555433 210 001111111111
Q ss_pred chhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcC
Q 004279 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQ 523 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~ 523 (764)
..+..+|.+.++++.+...|.+... ..+. ....+..
T Consensus 302 ------------------------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk 338 (539)
T KOG0548|consen 302 ------------------------------------ARLGNAYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLK 338 (539)
T ss_pred ------------------------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHH
Confidence 1133456666777777777765311 1111 1122333
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004279 524 ESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 602 (764)
..++++.......-. .|.... ...--+.+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+..|++=.
T Consensus 339 ~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da 415 (539)
T KOG0548|consen 339 EAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDA 415 (539)
T ss_pred HHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445555544444332 233211 1112445667788888888888888775 446777888888888888888888776
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004279 603 DLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 603 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
+...+. .|+ ...|.-=..++....+++.|.+.|.+.++ ..|+..-+..-+.
T Consensus 416 ~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 416 KKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYR 467 (539)
T ss_pred HHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 666543 333 22333333334444567777777777765 3455544433333
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.001 Score=78.70 Aligned_cols=345 Identities=13% Similarity=-0.003 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004279 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 132 (764)
.........+...|++.+|...+....... .-..............|++..+.+.++.+.......++.........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 333444555667777777776555442211 001112222233344577776666666553221112232333445556
Q ss_pred HccCCHHHHHHHHHHHhhhcCC-----CCCh--hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHH
Q 004279 133 CKGGYLEEASNLIYFLGERYGI-----YPIL--PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELLK 201 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~-----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~ 201 (764)
...|++++|..+++...+...- .+.. .....+...+...|++++|...++.....-...+. .+.+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 6789999999998876432111 1111 12222334456789999999999987763212222 23344555
Q ss_pred HHHhccChhHHHHHHHHHHcc----CCC--CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccc
Q 004279 202 LAVWQKNLSAVHEIWEDYIKH----YSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
.+...|+++.|...+...... ..+ ...++..+..++...|+++.|...+++.....-.....
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------ 567 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE------------ 567 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------
Confidence 667899999999999888752 111 23455667778889999999999999877531111000
Q ss_pred ccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCC--cccHHHHHHHHHhcCChhHHHHHH
Q 004279 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPS--SHTYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~--~~t~~~li~~~~~~~~~~~a~~~~ 351 (764)
........+..+...+...|++++|...+.+..... ..+. ..++..+.......|+++.|...+
T Consensus 568 ------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 568 ------------QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYL 635 (903)
T ss_pred ------------cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000001244556667777899999999998875531 1122 223444555677899999999998
Q ss_pred HHHHHCCCCC-chhHH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc------hHHHHHHHhcCCCHHHHHHHHH
Q 004279 352 KIMQQNNLKP-QDSTI-----ATLSVECSKALELDLAEALLDQISRCTNPKP------FSAFLAACDTMDKPERAIKIFA 419 (764)
Q Consensus 352 ~~m~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~a~~l~~ 419 (764)
.......... ....+ ...+..+...|+.+.|...+........... +..+..++...|++++|...++
T Consensus 636 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 636 NRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred HHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8875421110 11101 1123445668899999999877654321111 3456667888899999999888
Q ss_pred HHhh
Q 004279 420 KMRQ 423 (764)
Q Consensus 420 ~m~~ 423 (764)
+...
T Consensus 716 ~al~ 719 (903)
T PRK04841 716 ELNE 719 (903)
T ss_pred HHHH
Confidence 7764
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=5.9e-05 Score=76.83 Aligned_cols=222 Identities=9% Similarity=-0.043 Sum_probs=164.6
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004279 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
-+.+.|+...|.=+|+..++.+ +-+...|..|..+.+..++-..|+..+.+..+-+ +-|....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3457788889999999888885 5577899999999999999999999998886543 234556777777888889999
Q ss_pred HHHHHHHHHHhcCCC--------CChhhHHHHHHHHHhccChhHHHHHHHHHHccC--CCCHHhHHHHHHHhhccCCHHH
Q 004279 176 HANLCLDLMDSRMVG--------KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY--SLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.|+..|+......++ ++..+-.. +.+.....+....++|-.+.... .+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887654211 01000000 12223333455666666666543 4888899999999999999999
Q ss_pred HHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004279 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 325 (764)
|+..|+.+.. ++|++ ...||-|-..++...+.++|+..|.+.++. +
T Consensus 449 aiDcf~~AL~--v~Pnd------------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--q 494 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPND------------------------------YLLWNRLGATLANGNRSEEAISAYNRALQL--Q 494 (579)
T ss_pred HHHHHHHHHh--cCCch------------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhc--C
Confidence 9999999988 77776 268999999999999999999999999875 6
Q ss_pred CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004279 326 PSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 326 p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~ 356 (764)
|+-+ ....|--.|...|.+++|...|-..+.
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6643 444455568899999998888766543
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.0044 Score=63.07 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=72.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004279 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGD 594 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~ 594 (764)
.+.+.+.|++..|+..|.+++... +-|...|..-.-+|.+.|.+..|+.=.+..++. .|+ ...|..=..++.-..+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHH
Confidence 456678899999999999998886 446778888888999999999988887777775 233 2333333334444557
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004279 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
++.|++.|++..+. .|+..-+..-+.-|..
T Consensus 442 ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888887643 3554444444444444
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.35 E-value=0.0047 Score=62.83 Aligned_cols=157 Identities=11% Similarity=0.129 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004279 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
.+|...|+.-.+..-++.|..+|.+..+.+..+ +...+++++..+|. ++.+-|.++|+.=.+. +.-++.--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 467777777777778888888888888887777 66677777776664 6777888888654433 22333444667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcC
Q 004279 589 LLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCG 663 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g 663 (764)
+...++-..|..+|++....++.||. .+|..+|.-=..-|++..+.++-+++... ...+....-..+++-|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 77888888888888888877666553 57888888777888888888887777642 11222223334455555555
Q ss_pred ChHHH
Q 004279 664 FHNSA 668 (764)
Q Consensus 664 ~~~~a 668 (764)
++.--
T Consensus 525 ~~~c~ 529 (656)
T KOG1914|consen 525 LYPCS 529 (656)
T ss_pred ccccc
Confidence 54433
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.35 E-value=0.0047 Score=62.78 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004279 525 SHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP-QTMTYTALIKILLDYGDFDEALNLL 602 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 602 (764)
.+...+.+++....- +.| ..+|...++...+...++.|+.+|.++.+.+..+ ++..+++++.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 455666676665542 334 3568888888888899999999999999988777 88899999998886 6789999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004279 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
+.-... +.-++.--...++-+...++-..|..+|++.+..++.|| ...|..+|.-=+.-|+.+.+.++-+++...
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 975532 233444456677888888999999999999998866665 468999999889999999999888776543
No 111
>PLN02789 farnesyltranstransferase
Probab=98.33 E-value=0.00047 Score=68.73 Aligned_cols=167 Identities=7% Similarity=-0.040 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC--hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHH
Q 004279 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN--LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
+++++..++.+.+..++ +..+|+.--..+.+.++ .+.+..+++.+.+..+.+..+|+....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555555443322 22233322222223332 2455666666666667777777777777778888888888888
Q ss_pred HHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc---CC----HHHHHHHHHHHHHCCC
Q 004279 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT---QN----SGLAEQLMLQMQSLGL 324 (764)
Q Consensus 252 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~a~~~~~~m~~~g~ 324 (764)
++.+.+.... .+|+.....+.+. |. .+..++...+++...
T Consensus 167 ~~I~~d~~N~--------------------------------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~- 213 (320)
T PLN02789 167 QLLEEDVRNN--------------------------------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN- 213 (320)
T ss_pred HHHHHCCCch--------------------------------hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-
Confidence 8887544433 2666555444433 22 245666666666653
Q ss_pred CCCcccHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHh
Q 004279 325 QPSSHTYDGFIRAIVSD----RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 325 ~p~~~t~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 375 (764)
+-|...|+.+...+... +...+|.+.+.+..+.++. +...+..|++.|+.
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 23556677777777662 3345677777776665443 45566677777765
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=5.7e-05 Score=73.04 Aligned_cols=189 Identities=11% Similarity=-0.019 Sum_probs=125.9
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hh
Q 004279 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PV 160 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 160 (764)
.....+..+...+...|+++.|...++++.... +.++ ..+..+..+|.+.|++++|...++.+.+..+-.|.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 344557777778888899999999999888764 2222 466778888889999999999999887654322221 13
Q ss_pred hHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHH
Q 004279 161 YNSFLGACAKL--------HSMVHANLCLDLMDSRMVGKNEV-TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 161 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
+..+..++.+. |+.+.|.+.|+.+... .|+.. .+..+.......+.. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRL-----------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 44455555544 6788888888888775 34432 222221111000000 00112
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHH
Q 004279 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 311 (764)
.+...|.+.|+++.|...++...+. .|+.+.. ...+..+..++.+.|++++
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~---------------------------~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN--YPDTPAT---------------------------EEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH--CCCCcch---------------------------HHHHHHHHHHHHHcCCHHH
Confidence 4556788999999999999999873 2322100 1488899999999999999
Q ss_pred HHHHHHHHHHC
Q 004279 312 AEQLMLQMQSL 322 (764)
Q Consensus 312 a~~~~~~m~~~ 322 (764)
|...++.+...
T Consensus 222 A~~~~~~l~~~ 232 (235)
T TIGR03302 222 AQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 113
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.00041 Score=69.15 Aligned_cols=205 Identities=8% Similarity=-0.079 Sum_probs=121.5
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH--H
Q 004279 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM--V 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~ 175 (764)
..+..++|+.+.+++++.+ +-+..+|+..-.++...| ++++++..++++.+.+ +.+..+|+..-..+.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhH
Confidence 3455566666666666553 223345555444555555 4567777766665443 22333455444334444442 5
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc---CC----HHHHHH
Q 004279 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---RD----LKSAYE 248 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~ 248 (764)
+++.+++.+.+...+ +..+|+...-++...|+++++.+.++.+++..+.+..+|+....++.+. |. .+.++.
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 566666666665433 5566666666666667777777777777776666666776666655444 22 245666
Q ss_pred HHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCC
Q 004279 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----QNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 249 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~ 324 (764)
...++.+ ..|+. ..+|+-+...+... ++..+|.+.+.+....+
T Consensus 205 y~~~aI~--~~P~N------------------------------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~- 251 (320)
T PLN02789 205 YTIDAIL--ANPRN------------------------------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD- 251 (320)
T ss_pred HHHHHHH--hCCCC------------------------------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-
Confidence 6666666 45544 15888888887773 34466888888876643
Q ss_pred CCCcccHHHHHHHHHh
Q 004279 325 QPSSHTYDGFIRAIVS 340 (764)
Q Consensus 325 ~p~~~t~~~li~~~~~ 340 (764)
..+......|+..++.
T Consensus 252 ~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 252 SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 2355667777777764
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=0.00025 Score=79.48 Aligned_cols=202 Identities=11% Similarity=0.046 Sum_probs=127.5
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHc-Cccc---cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004279 89 DFFHILNYCARSPDPLFVMETWRMMEEK-EIGL---NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
.|...+....+.++.+.|+++.++++.. ++.- -...|.++++.--..|.-+...++|++..+-- ..-..|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHH
Confidence 3555566666667777777777776653 1111 12355555555555566677777777775421 112356677
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCC--CHHhHHHHHHHhhccCC
Q 004279 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 242 (764)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+..|- ........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777765 2235566667777777777777777777777765443 45556666666667777
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004279 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
.+.+..+|+.......+-. ..|+..|+.=.++|+.+.+..+|++....
T Consensus 1616 aeRGRtlfEgll~ayPKRt--------------------------------DlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRT--------------------------------DLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred chhhHHHHHHHHhhCccch--------------------------------hHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7777777777665222222 27777777777777777777777777766
Q ss_pred CCCC
Q 004279 323 GLQP 326 (764)
Q Consensus 323 g~~p 326 (764)
++.|
T Consensus 1664 ~l~~ 1667 (1710)
T KOG1070|consen 1664 KLSI 1667 (1710)
T ss_pred CCCh
Confidence 6543
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.31 E-value=0.0097 Score=64.43 Aligned_cols=528 Identities=12% Similarity=0.045 Sum_probs=271.9
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
|-.....+++..|+....++.+.. |+. .|..++.++. +.|..++|..+++.....+.. |..+...+-..|...|
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence 445667889999999999988764 433 4556666554 789999999888887776544 8889999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC--------
Q 004279 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-------- 208 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------- 208 (764)
+.++|..++++..++ .|+......+..+|+|.+++.+-.++--++-+. ++-+...|=++++.....-.
T Consensus 92 ~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999999765 467777888889999988886554444333332 22345555455554443211
Q ss_pred --hhHHHHHHHHHHccC-C-CCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC
Q 004279 209 --LSAVHEIWEDYIKHY-S-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 209 --~~~a~~~~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
+.-|.+.++.+.+.. + .+..-.-.-...+...|+.++|..++..=......+..
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~---------------------- 225 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN---------------------- 225 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc----------------------
Confidence 124455555555421 1 11222222333455778899998888432221111111
Q ss_pred cccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH----HHh------------cCChhHHH
Q 004279 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA----IVS------------DRGLRNGM 348 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~----~~~------------~~~~~~a~ 348 (764)
...-+--+..+...+++.+..++-.++...| +|. |...+.. +-. .+..+...
T Consensus 226 --------~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ 293 (932)
T KOG2053|consen 226 --------LYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECI 293 (932)
T ss_pred --------hHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHH
Confidence 0233445666777888888888888888775 333 3322221 111 11122222
Q ss_pred HHHHHHHHCCCCCchhHHHHHHHHH---HhcCCHHHHHHH-HHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhc
Q 004279 349 EVLKIMQQNNLKPQDSTIATLSVEC---SKALELDLAEAL-LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK 424 (764)
Q Consensus 349 ~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 424 (764)
+..++....... ++ |-+=+..+ -.-|+.+++... |+..-.. ..|..=+..|...=..+.-..+......
T Consensus 294 ek~~~~i~~~~R-gp--~LA~lel~kr~~~~gd~ee~~~~y~~kfg~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~- 366 (932)
T KOG2053|consen 294 EKAQKNIGSKSR-GP--YLARLELDKRYKLIGDSEEMLSYYFKKFGDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVL- 366 (932)
T ss_pred HHHHHhhccccc-Cc--HHHHHHHHHHhcccCChHHHHHHHHHHhCCC---cHhHhhHHHhhccCCHHHHHHHHHHhhc-
Confidence 222222222111 11 22222222 234666665433 3333322 2222222222222222222222222221
Q ss_pred cCCCHH---------hHHHHH-HHhcCCCCchhhchhhhhhhhHHHHHHHHH-H-HHHCCCCCcH---------HHHHHH
Q 004279 425 LRPDIR---------TYELLF-SLFGNVNAPYEEGNMFSQVDSAKRINAIEM-D-MARNNIQHSH---------ISMKNL 483 (764)
Q Consensus 425 ~~p~~~---------t~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---------~~~~~l 483 (764)
..++.. +.+..+ ..++..-... +.. ......+....++ . -...++.|+. .+.+.|
T Consensus 367 ~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~-ad~---i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~L 442 (932)
T KOG2053|consen 367 ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP-ADS---ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHL 442 (932)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhccccCC-hHH---HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHH
Confidence 111111 011111 1111110000 000 0000001000000 0 1112233332 233568
Q ss_pred HHHHhccCcHH---HHHHHHHhc--CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004279 484 LKALGAEGMIR---ELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 484 ~~~~~~~g~~~---~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 558 (764)
++.+.+.++.. +|+-+++.. ..+.|..+--.+|..|+-.|-+..|.++|+.|--+.|.-|+.-|.. ..-+...|
T Consensus 443 id~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g 521 (932)
T KOG2053|consen 443 IDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSG 521 (932)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcc
Confidence 88898888866 444444442 2223344455678889889999999999999877777777666543 33455567
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004279 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL---DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~---~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
++..+...++...+.--..-..+-..+..+| +.|.+.+..++. +++..+--..-..+-+..++..+..++.+.-..
T Consensus 522 ~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~ 600 (932)
T KOG2053|consen 522 RSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLK 600 (932)
T ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 7777666665554420000011122233333 345554444432 333221111122344556666677777777777
Q ss_pred HHHHHH
Q 004279 636 IIEQMH 641 (764)
Q Consensus 636 ~~~~m~ 641 (764)
.++.|.
T Consensus 601 ~~~~~~ 606 (932)
T KOG2053|consen 601 LLESMK 606 (932)
T ss_pred HHhccc
Confidence 776665
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=3.5e-05 Score=80.51 Aligned_cols=212 Identities=14% Similarity=0.021 Sum_probs=170.7
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+.+.|-..+|+.+|+++. .+--++.+|...|+...|..+..+-.++ +|++..|..+.+.....--+
T Consensus 405 aell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHH
Confidence 455777888999999998864 3555777788888888898888888874 78999999999999888889
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004279 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
++|.++++....+ .-..+.....+.++++++.+.|+.-.+.. ..-..+|-..-.+..+.+++..+.+.|..
T Consensus 474 EkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 9999998866432 11222222334789999999998876643 22455777777788899999999999999
Q ss_pred HHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHH
Q 004279 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.+...+.+...||++-.+|.+.++-.+|...+.+..+.+..+-. .|..
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~--------------------------------iWEN 592 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ--------------------------------IWEN 592 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe--------------------------------eeec
Confidence 99998999999999999999999999999999999987754433 7888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 004279 299 VIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 299 li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
.+....+.|.+++|++.+.+|...
T Consensus 593 ymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 593 YMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHh
Confidence 888899999999999999998753
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.0003 Score=78.18 Aligned_cols=145 Identities=10% Similarity=0.046 Sum_probs=91.9
Q ss_pred chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004279 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN-KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
..+..|+..+...++++.|.++.+...+. .|+. ..|-.+...+...++.+++..+ . ++.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------~l~ 91 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N----------------LID 91 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h----------------hhh
Confidence 44666777776777777777777755554 2332 2233333345555554444333 2 222
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004279 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
......++.....+...|... .-+...+..+..+|.+.|+.+++.++|+++.+..+.|+.+.|.+...|... ++++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 223333343333333444442 223446777778888889999999999999988888888999999888888 88888
Q ss_pred HHHHHHHHH
Q 004279 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~m~~ 255 (764)
..++.+..+
T Consensus 169 ~~m~~KAV~ 177 (906)
T PRK14720 169 ITYLKKAIY 177 (906)
T ss_pred HHHHHHHHH
Confidence 888877765
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.00015 Score=76.05 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=174.3
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004279 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
+|-...-..+...+...|-..+|..+|++... |.-+|.+|...|+..+|..+..+-.+ .+||+..|-.++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 33333445566777888999999999887654 56677888888999999998888877 788999999998
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHH
Q 004279 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 314 (764)
+.....--+++|.++++....+ +-..+......+++++++.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------------------------------------A~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------------------------------------AQRSLALLILSNKDFSEADK 506 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------------------------------------HHHhhccccccchhHHHHHH
Confidence 8888877888888888876542 11112222334788999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 004279 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT- 393 (764)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 393 (764)
.|+.-.+.+ ..-..+|-.+--+..+.++++.+.+.|.......+. +...||.+-.+|.+.|+-.+|...+.+..+..
T Consensus 507 hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 507 HLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 888876643 224456766666777889999999999888775433 45568999999999999999999999988764
Q ss_pred -CCcchHHHHHHHhcCCCHHHHHHHHHHHhh--ccCCCHHhHHHHHH
Q 004279 394 -NPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFS 437 (764)
Q Consensus 394 -~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~p~~~t~~~ll~ 437 (764)
+...|...+....+.|.+++|++.+.++.. ....|......++.
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 666788888888999999999999999877 22335555444443
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.24 E-value=0.0052 Score=58.72 Aligned_cols=198 Identities=14% Similarity=0.046 Sum_probs=126.2
Q ss_pred HHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccccccccc
Q 004279 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.+-+.+...|.+..|+.-|...+++.+.+-.++-.-...|...|+...|+.=|.+..+ ++||-.-
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~------------- 107 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMA------------- 107 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHH-------------
Confidence 3445566677777777777777777777767776777778888888888877777777 5665310
Q ss_pred CCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc----------------HHHHHHHHHhc
Q 004279 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT----------------YDGFIRAIVSD 341 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----------------~~~li~~~~~~ 341 (764)
+----...+.+.|.++.|..=|+..++.. |+..+ ....+..+...
T Consensus 108 -----------------ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 108 -----------------ARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred -----------------HHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 11111234667888888888888887653 32211 11223344556
Q ss_pred CChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHH
Q 004279 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFA 419 (764)
Q Consensus 342 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~ 419 (764)
|+...|......+++..+ .|...+..-..+|...|++..|+.-++...+.. ++..+--+-..+-..|+.+.++...+
T Consensus 169 GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred CchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 777788888777777543 266666677777888888887777666665443 44555555556666777777766666
Q ss_pred HHhhccCCCHHh
Q 004279 420 KMRQKLRPDIRT 431 (764)
Q Consensus 420 ~m~~~~~p~~~t 431 (764)
+-.+ +.||...
T Consensus 248 ECLK-ldpdHK~ 258 (504)
T KOG0624|consen 248 ECLK-LDPDHKL 258 (504)
T ss_pred HHHc-cCcchhh
Confidence 5554 4455443
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.20 E-value=0.00013 Score=70.46 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=128.5
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCc---chHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---
Q 004279 49 ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA---DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN--- 122 (764)
Q Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 122 (764)
+.....+......+...|++++|+..|+.+.... +.++ ..+..+..++.+.|+++.|...++.+.+.. +.+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 3445566677888999999999999999998765 2222 356778888899999999999999999874 2122
Q ss_pred HHHHHHHHHHHcc--------CCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004279 123 KCYLLMMQALCKG--------GYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 123 ~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
..+..+..++.+. |++++|.+.|+.+...+ |+.. .+..+..... .... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~----~~~~------~~-------- 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDY----LRNR------LA-------- 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHH----HHHH------HH--------
Confidence 2455556666654 78999999999997653 4432 2222211100 0000 00
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHccCC---CCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.....+...+...|++++|...++...+..+ .....+..+..++.+.|+.++|...++.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0112344567888999999999999887543 3457888999999999999999999888875
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.8e-06 Score=51.98 Aligned_cols=33 Identities=42% Similarity=0.728 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 004279 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~ 543 (764)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.10 E-value=0.00043 Score=64.07 Aligned_cols=157 Identities=10% Similarity=-0.024 Sum_probs=117.1
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..|...|+++.+..-.+.+.. +. . .+...++.+++...++...+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567788998886444322211 11 1 1223567778888888888775 67888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHH-hccCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHH
Q 004279 139 EEASNLIYFLGERYGIYPILPVYNSFLGAC-AKLHS--MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
++|...|++..... +.+...+..+..++ .+.|+ .++|.+++++..+..+. +..++..+...+...|++++|...
T Consensus 90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999887543 33556777777764 66677 59999999999987544 667778888888899999999999
Q ss_pred HHHHHccCCCCHHhHH
Q 004279 216 WEDYIKHYSLSIFSLR 231 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (764)
|+.+.+..+|+..-+.
T Consensus 167 ~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 167 WQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHhhCCCCccHHH
Confidence 9999988887776543
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00025 Score=65.31 Aligned_cols=127 Identities=9% Similarity=-0.104 Sum_probs=71.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 004279 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
..+-..+--.|+-+....+...... ..+.|....+.++....+.|++..|+..|.+..... ++|..+|+.+--+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 3444455555655555555554422 222343444555666666666666666666655532 3355556655555666
Q ss_pred ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.|+++.|..-|.+..+-.+.++..+|.+.-.|.-.|+.+.|..++.....
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666555555555666666666666666666666555554
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.0017 Score=72.53 Aligned_cols=240 Identities=8% Similarity=-0.070 Sum_probs=134.0
Q ss_pred CCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH
Q 004279 45 GLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK 123 (764)
Q Consensus 45 ~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 123 (764)
.+.|. ....+..++..+...+++++|+++.+...+.. |+... |..+.-.+.+.++...+.-+
T Consensus 25 ~~~p~-n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------- 87 (906)
T PRK14720 25 NYSLS-KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------- 87 (906)
T ss_pred cCCcc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--------------
Confidence 34444 46778888998999999999999999777654 44433 33333355555554443322
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.++.......++.-+..+.+.|.+ . .-+...+-.|..+|-+.|+.++|..+++++.+..+. |..+.|.+-..+
T Consensus 88 ---~~l~~~~~~~~~~~ve~~~~~i~~-~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ---NLIDSFSQNLKWAIVEHICDKILL-Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSY 160 (906)
T ss_pred ---hhhhhcccccchhHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Confidence 333333334444333333333322 1 123345566666666667777777777776665522 555666666666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccc---ccccccccccCCC
Q 004279 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT---SEGRLRSSRLDIP 280 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 280 (764)
+.. ++++|.+++.+.++ .|....++..+.+++.++.+.....-++.... +.+.+...
T Consensus 161 ae~-dL~KA~~m~~KAV~--------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~----- 220 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIY--------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT----- 220 (906)
T ss_pred HHh-hHHHHHHHHHHHHH--------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccc-----
Confidence 666 66777666666543 34455566666666666655222111110000 00000000
Q ss_pred ccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004279 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 339 (764)
+- ..++-.+-..|-...+++++..+|+...+... -|..+..-++.+|.
T Consensus 221 --------~~--~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 --------RL--VGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred --------hh--HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 00 14666677778888888888888888887642 24555666666665
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00047 Score=63.58 Aligned_cols=160 Identities=8% Similarity=-0.055 Sum_probs=125.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC
Q 004279 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
..+-..+...|+-+.+..+........ .-|........+.....|++..|...+.+.....++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 455566777788888888777655432 2244455568888899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004279 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+++.|..-|.+..+ +.|+.+ ...|.+.-.+.-.|+.+.|..++.....
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p------------------------------~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEP------------------------------SIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCc------------------------------hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999988 555542 4788888888889999999999998887
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004279 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 322 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 355 (764)
.+. -|...-..+.......|+++.|..+-..-.
T Consensus 197 ~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 197 SPA-ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCC-CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 642 255566667777888889888887765443
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=7.6e-06 Score=51.41 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=27.9
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004279 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888763
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.01 E-value=0.00095 Score=61.80 Aligned_cols=119 Identities=8% Similarity=-0.004 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHH-hhccCC--HHHHH
Q 004279 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRD--LKSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~ 247 (764)
.++.+++...++...+..+ .|...|..+...|...|+++.|...++...+..+.+...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4444555555555444432 2444555555555555555555555555555555555555555554 244444 35666
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004279 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
+++++..+ ..|+. ..++..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~--~dP~~------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALA--LDANE------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHH--hCCCC------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666655 33332 135555555666666666666666666554
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0017 Score=59.37 Aligned_cols=157 Identities=11% Similarity=0.001 Sum_probs=115.0
Q ss_pred CChhHHHHHHHHHHH---cC-ccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004279 101 PDPLFVMETWRMMEE---KE-IGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
.++++..+++..+.. .| ..++.+ .|..++.+....|+.+.|...++++..+.+-.+.+.-...| -+--.|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchh
Confidence 466777777777664 23 445554 56777778888899999999999887665333333222222 233468999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+|+++|+...+.. +.|.+++-.=+......|.--.|++-+....+.+..|...|..+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998876 336677766666666777777888888888888899999999999999999999999999998876
Q ss_pred hhhcccc
Q 004279 256 LAMMGKL 262 (764)
Q Consensus 256 ~~~~~~~ 262 (764)
+.|..
T Consensus 183 --~~P~n 187 (289)
T KOG3060|consen 183 --IQPFN 187 (289)
T ss_pred --cCCCc
Confidence 55554
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.0011 Score=73.28 Aligned_cols=133 Identities=14% Similarity=0.039 Sum_probs=104.2
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-h
Q 004279 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV-T 195 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 195 (764)
.+.++..+-.|.....+.|.+++|..+++...+. .|+ ......+..++.+.+++++|+..+++..+. .|+.. .
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH
Confidence 4556778888888888888899998888888653 344 446677778888888899998888888876 34444 4
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...+-.++.+.|++++|..+|+++....+.+..++..+..++.+.|+.++|...|+...+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555677888889999999888886666688888888888888999999888888876
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.1e-05 Score=50.15 Aligned_cols=33 Identities=33% Similarity=0.665 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 004279 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p 542 (764)
.+||++|.+|++.|+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.98 E-value=0.0014 Score=72.32 Aligned_cols=220 Identities=13% Similarity=0.063 Sum_probs=154.8
Q ss_pred ccHHHHHHHHHHHHccCCHHHHH-HHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004279 120 LNNKCYLLMMQALCKGGYLEEAS-NLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
.++.....+=.+.+.-|..++|- +++.+..+ ++....+-....+++.-+....+. ...+...+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVL 91 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHH
Confidence 34555555556677778777774 45554421 333333333333333333333322 3446788888
Q ss_pred HHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccC
Q 004279 199 LLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (764)
|.......|.+++|..+++.+.+..|.+......+..++.+.+++++|...+++... ..|+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~---------------- 153 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSS---------------- 153 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCC----------------
Confidence 888888999999999999999998888899999999999999999999999999988 45554
Q ss_pred CCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004279 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
....+.+..++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.-
T Consensus 154 --------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 --------------AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred --------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2477788888999999999999999998743 2236678888888889999999999999988753
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004279 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 359 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 393 (764)
- +....|+.++ +++..-..+++.+...+
T Consensus 219 ~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 219 G-DGARKLTRRL------VDLNADLAALRRLGVEG 246 (694)
T ss_pred C-cchHHHHHHH------HHHHHHHHHHHHcCccc
Confidence 2 2334444333 34455556666665443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.96 E-value=0.00026 Score=61.78 Aligned_cols=100 Identities=10% Similarity=-0.171 Sum_probs=48.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcc
Q 004279 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+...+...|++++|...|+.....+ +.+...|..+..++.+.|++++|+..|+......+ .+..++..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 3444455555555555555544322 22334455555555555555555555555554322 24444444444555555
Q ss_pred ChhHHHHHHHHHHccCCCCHHhH
Q 004279 208 NLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
++++|...|+...+..+.++..+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHH
Confidence 55555555555554444444444
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.0064 Score=61.40 Aligned_cols=118 Identities=11% Similarity=0.066 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004279 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
+.+......+...++..+|.+.++.+... .|+.. ..-.+-.++.+.|++.+|..+++........ |+..|..|..+
T Consensus 341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqa 417 (484)
T COG4783 341 YYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQA 417 (484)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHH
Confidence 44455555666666666666666666554 34432 2333445566666666666666666555443 55666666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCH
Q 004279 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~ 429 (764)
|...|+..++.....+ +|.-.|+++.|...+...++.++++.
T Consensus 418 y~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 418 YAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 6666665555443322 34445666666666666555333333
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.94 E-value=0.00011 Score=64.23 Aligned_cols=105 Identities=10% Similarity=-0.074 Sum_probs=63.1
Q ss_pred hccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcc
Q 004279 40 LTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG 119 (764)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (764)
|.+.+..+|+. +......+...|++++|+..|+.....+ +.+...+..+..++...|++++|...|+...+.+ +
T Consensus 16 ~~~al~~~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p 89 (144)
T PRK15359 16 LKQLLSVDPET----VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-A 89 (144)
T ss_pred HHHHHHcCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 33344555552 2223445566666677777666666554 3455556666666666666666766666666654 4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004279 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 150 (764)
.+...+..+..++...|++++|+..|+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666666666666643
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.90 E-value=0.06 Score=58.64 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=59.2
Q ss_pred HHHHHHHHHccCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004279 547 YNIMIDCCSIIRCFK---SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623 (764)
Q Consensus 547 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 623 (764)
.+.|+..|.+.++.. +|..+++.-.... +-|..+--.+|..|+--|-+..|.++|..+.-..+.-|...|..+ +-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HH
Confidence 456677777777655 3444444444331 223334456788888888889999998888767777766555433 34
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 004279 624 ACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~ 642 (764)
+...|++..+...++....
T Consensus 517 ~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHhcccchhHHHHHHHHHH
Confidence 5566777777666665553
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=1.8e-05 Score=49.20 Aligned_cols=33 Identities=33% Similarity=0.333 Sum_probs=25.1
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 004279 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK 191 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (764)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=0.016 Score=58.70 Aligned_cols=147 Identities=12% Similarity=0.014 Sum_probs=122.8
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccc
Q 004279 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 274 (764)
-|...+. +...|+++.|+..+..+.+..|.|++........+.+.++..+|.+.++.+.. ..|+.+
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~----------- 374 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSP----------- 374 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCcc-----------
Confidence 3444443 45678999999999999999999999999999999999999999999999998 566642
Q ss_pred cccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004279 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
..+-.+..++.+.|++.+|+.++++..... +-|...|..|-.+|...|+..++.....+
T Consensus 375 -------------------~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE- 433 (484)
T COG4783 375 -------------------LLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE- 433 (484)
T ss_pred -------------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-
Confidence 577788999999999999999999988764 55888999999999999998887765544
Q ss_pred HHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004279 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 393 (764)
.|...|+++.|...+....+..
T Consensus 434 -----------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 434 -----------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -----------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 4566788999998888887653
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.81 E-value=0.00045 Score=59.96 Aligned_cols=96 Identities=11% Similarity=-0.027 Sum_probs=54.6
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004279 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (764)
....+...+...|+++.|.+.++.....+ +.+...+..+...|.+.|++++|..+|+...+.. +.+...+..+...|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 34444455555566666666666665543 3355555566666666666666666666554322 23344555555566
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 004279 169 AKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~ 187 (764)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665553
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.017 Score=53.64 Aligned_cols=185 Identities=15% Similarity=0.091 Sum_probs=120.2
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhH-HHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004279 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLF-VMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
+.++|...|.+...+.- +.... .++...+..+.......++.+. .-++.+.+.......+......-...|+..|
T Consensus 47 ~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~ 122 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDG 122 (299)
T ss_pred HHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC
Confidence 34567777776554432 22221 2222233333333333344333 3455556665555555455555566789999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----ccChhHH
Q 004279 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAV 212 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a 212 (764)
++++|.+..+.. . +......=+..+.+..+++-|.+.++.|.+. -+..|.+.|..++.+ .+.+..|
T Consensus 123 ~~deAl~~~~~~-~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 123 DFDEALKALHLG-E------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred ChHHHHHHHhcc-c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 999999988752 1 2233333445567788999999999999985 266677766666553 4457788
Q ss_pred HHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004279 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 256 (764)
.-+|+++....+|++.+.+....++...|++++|..+++....+
T Consensus 193 fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 193 FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888764
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0067 Score=56.16 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=96.7
Q ss_pred HHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 004279 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544 (764)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 544 (764)
.+.+.......+......-...|.+.|++++|++..... .... ....=+..+.+..+.+-|.+.+++|.+- -+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-~~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-ENLE--AAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 333444444444333334445577777777777776552 2222 2222234445666777777777777763 355
Q ss_pred HHHHHHHHHHHcc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004279 545 ATYNIMIDCCSII----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620 (764)
Q Consensus 545 ~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 620 (764)
.|.+-|..++.+. +.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++...... ..++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHH
Confidence 6666666665542 4566777777777654 45677777777777777777777777777776543 3345555555
Q ss_pred HHHHHHcCCH-HHHHHHHHHHH
Q 004279 621 LKKACEKGRI-DVIEFIIEQMH 641 (764)
Q Consensus 621 i~~~~~~g~~-~~a~~~~~~m~ 641 (764)
|..-...|.. +-..+.+.+++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHH
Confidence 5444444443 33444555554
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0075 Score=55.38 Aligned_cols=187 Identities=9% Similarity=-0.029 Sum_probs=139.7
Q ss_pred cCCcchHHHHHHHhhhc---c-CCCCcch-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004279 65 RGERSRASHLLLNLGHA---H-HSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~---~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
..++++.++++.++... + ..++..+ |..++-+....|..+.|...+..+..+= +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45678888888887643 2 2233332 5555556666788889999999988762 333333222223355679999
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004279 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
+|+++++.+.+.+ +.|.+++-.=+...-..|+.-+|++-+....+. +..|...|..+-..|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998765 557777777676666778888888888888776 4569999999999999999999999999999
Q ss_pred HccCCCCHHhHHHHHHHhhccC---CHHHHHHHHHHHHH
Q 004279 220 IKHYSLSIFSLRKFVWSFTRLR---DLKSAYETLQHMVA 255 (764)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 255 (764)
+=..|.++-.+..+...+.-.| +.+.|.+.|.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9877888888888877765554 56778999999887
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.74 E-value=0.00081 Score=68.42 Aligned_cols=124 Identities=9% Similarity=-0.023 Sum_probs=96.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC
Q 004279 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
..|+..+...++++.|+.+|+++.+.. |+. ...+.+.+...++-.+|.+++.+..+..+.+..........+.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344455556688888888888888763 443 3446667777777778888888888777778777777788888999
Q ss_pred CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004279 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
+.+.|.++.+++.+ ..|+.+ .+|..|..+|.+.|+++.|+..++.+.-
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f------------------------------~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEF------------------------------ETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhH------------------------------HHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999988 666662 5899999999999999999988888753
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.3e-05 Score=46.26 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 004279 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.00099 Score=67.78 Aligned_cols=127 Identities=15% Similarity=0.058 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004279 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
.....|+..+...++++.|+.+|+++.+.+ |+ ....|++.+...++-.+|.+++.+..... +-+......-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344566677777899999999999997653 55 44558888888899999999999988753 2255556666667
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+.+.++++.|.++.+++.+..|.+..+|..|..+|.+.|+++.|+-.++.++-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88999999999999999998888889999999999999999999999998874
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.68 E-value=0.0007 Score=69.12 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=100.6
Q ss_pred cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHH
Q 004279 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
..+.+......+++.+....+++.+..++-+.....-.... ..++.+++|+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~-----------------------------~~~t~ha~vR 111 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYL-----------------------------LPSTHHALVR 111 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccc-----------------------------cCccHHHHHH
Confidence 35666777777888888888888898888888753111100 0147789999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhc
Q 004279 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 302 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 376 (764)
.|.+.|..+.++.+++.=...|+-||.+|++.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 112 ~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 112 QCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998888776777776555555544
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.0018 Score=56.77 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=62.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh--hhHHHHH
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE--VTYTELL 200 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll 200 (764)
.|..++..+ ..++...+...++.+...++-.+ .....-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 25555555555555544321100 0011222334455556666666666665554322221 1222344
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHH
Q 004279 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (764)
..+...|++++|...++.. ......+..+....++|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555566666666665442 22233344555666677777777777777765
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.0011 Score=52.48 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004279 551 IDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIKILLDYG--------DFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 551 l~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555554432 2233445555555555555555555555
Q ss_pred HHHH
Q 004279 622 KKAC 625 (764)
Q Consensus 622 ~~~~ 625 (764)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 148
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.64 E-value=0.0017 Score=56.32 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=42.4
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc
Q 004279 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
...+...+.+.|++++|...|+.....+. .+...+..+...+...|++++|...++...+..+.+...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 33344444455555555555555444321 13334444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 004279 241 RDLKSAYETLQHMVA 255 (764)
Q Consensus 241 g~~~~A~~~~~~m~~ 255 (764)
|+++.|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.63 E-value=0.00088 Score=68.40 Aligned_cols=119 Identities=9% Similarity=0.170 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004279 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTC--GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li 586 (764)
......+++.+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..++|.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444555555555555555555555543 111122333456666666666666666665555556666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004279 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627 (764)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 627 (764)
+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666665555544444555555444444443
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=7.2e-05 Score=45.26 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=20.8
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004279 160 VYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
+||+|+++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.09 Score=52.46 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004279 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+-.. +-++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44444555566666666666655542 36666666667777777776665554321 123355666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004279 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 639 (764)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777776666652 113344555666666666554333
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.58 E-value=0.00091 Score=52.97 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHCCCCCCHHH
Q 004279 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPNAATYNIMIDCCSIIR--------CFKSASALVSMMVRDGFYPQTMT 581 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~p~~~~ 581 (764)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 999999999999987653 34468899999999999999999
Q ss_pred HHHHHHHHHhc
Q 004279 582 YTALIKILLDY 592 (764)
Q Consensus 582 ~~~li~~~~~~ 592 (764)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.56 E-value=0.0038 Score=54.71 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 004279 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ---TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTIL 621 (764)
Q Consensus 547 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li 621 (764)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 2566666666666666542 112 12222344566667777777777777766541221 12333455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 004279 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 622 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
..+...|++++|+..++...... .....+...-.+|.+.|++++|+..|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66667777777777765533211 222233334447777777777777665
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0047 Score=61.20 Aligned_cols=119 Identities=9% Similarity=-0.006 Sum_probs=73.8
Q ss_pred HHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc-CCHHHHHHHHHHHHHhhhcccchhcccccccccccccC
Q 004279 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (764)
+..|...|++..|-+++..+ ...|-.. |+++.|++.|++..+.-...+....
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~------------- 153 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS------------- 153 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH-------------
T ss_pred HHHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh-------------
Confidence 34566777777776666554 4467777 8999999999988764222221100
Q ss_pred CCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----cc-cHHHHHHHHHhcCChhHHHHHHH
Q 004279 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-----SH-TYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~-t~~~li~~~~~~~~~~~a~~~~~ 352 (764)
....+..+...+.+.|++++|.++|++........+ .. .|-..+-++...||...|...++
T Consensus 154 -------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 154 -------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp -------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 014677788889999999999999999876543222 11 12223335556788888888888
Q ss_pred HHHHCC
Q 004279 353 IMQQNN 358 (764)
Q Consensus 353 ~m~~~~ 358 (764)
......
T Consensus 221 ~~~~~~ 226 (282)
T PF14938_consen 221 RYCSQD 226 (282)
T ss_dssp HHGTTS
T ss_pred HHHhhC
Confidence 887653
No 155
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.1 Score=55.02 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=57.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
+|+.+...+.....|+.|.+.|..-.. . ...+.++.....+++-..+-..+. -|....-.+.+++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHH
Confidence 666666666666666666666654321 1 123445555555554444333332 24444555666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHH
Q 004279 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 421 (764)
+.|.-++|.+.|-+.... .+.+..|...+++.+|.++-+..
T Consensus 864 svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666555443322 23455566666666666665443
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0015 Score=64.32 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004279 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
.+|..+++..-+.+..+.|+.+|.+..+......+++...+++.-+ ..++.+.|.++|+...+. +..+..-|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566677777777777777777777764433334444444444322 245666677777777665 34455666666677
Q ss_pred HHhccChhHHHHHHHHHHccCCCCH---HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 203 AVWQKNLSAVHEIWEDYIKHYSLSI---FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+...++.+.|..+|+......+++. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776644433 5777888888888888888888888876
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.42 E-value=0.0045 Score=52.10 Aligned_cols=100 Identities=11% Similarity=-0.066 Sum_probs=39.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHH
Q 004279 127 LMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK--NEVTYTELLKLA 203 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~ 203 (764)
.+...+.+.|++++|.+.|+.+.+..+-.+ ....+..+...+.+.|+++.|...|+.+....+.. ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444444445555444444433221100 01233334444444455555555544444321110 122233333344
Q ss_pred HhccChhHHHHHHHHHHccCCCC
Q 004279 204 VWQKNLSAVHEIWEDYIKHYSLS 226 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~ 226 (764)
...++.++|.+.++.+.+..+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 44444444444444444433333
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0035 Score=61.80 Aligned_cols=144 Identities=8% Similarity=-0.017 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHH--HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004279 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFF--HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
..|...+....+.+..+.|..+|.+..+.+ ..+...|. +++..+ ..++.+.|..+|+...+. ++.+...|..-+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 456666777778888999999999998543 23334443 444333 246777799999999887 5677888888899
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004279 131 ALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
.+.+.|+.+.|..+|++.....+-.. ....|...+.-=.+.|+++.+.++.+++.+. .|+...+..++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 99999999999999999875422222 2348999999888999999999999988875 455444444433
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.14 E-value=0.29 Score=48.90 Aligned_cols=107 Identities=19% Similarity=0.169 Sum_probs=61.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004279 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625 (764)
Q Consensus 546 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 625 (764)
+.+..|.-|...|....|.++-.+. -.|+...|..-+.+|+..++|++-.++... +-.++-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3344444555556666655554443 236666666777777777777666554332 223466666777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 004279 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 626 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
+.|+..+|..+..+ +. + ..-+..|.+.|+|.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHH
Confidence 77776666666555 11 1 22355666777777665543
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.13 E-value=0.00091 Score=52.14 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHH
Q 004279 592 YGDFDEALNLLDLVSLEGI-PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~ 669 (764)
.|+++.|+.+++++.+..- .|+...+-.+...|.+.|++++|..++++ . ...|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677777777777765432 12344555577777777777777777776 2 233433 33333344777777777777
Q ss_pred HHHHH
Q 004279 670 EALQV 674 (764)
Q Consensus 670 ~~~~~ 674 (764)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77764
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.13 E-value=0.0059 Score=48.61 Aligned_cols=91 Identities=18% Similarity=-0.038 Sum_probs=42.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 004279 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+........ +..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 3344455555566666666665554321 122234444555555555555555555555443211 2233334444444
Q ss_pred hccChhHHHHHHHH
Q 004279 205 WQKNLSAVHEIWED 218 (764)
Q Consensus 205 ~~~~~~~a~~~~~~ 218 (764)
..|+.+.|...+..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 44444444444433
No 162
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.32 Score=51.50 Aligned_cols=314 Identities=12% Similarity=0.093 Sum_probs=153.1
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC--------chhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004279 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKP--------QDSTIATLSVECSKALELDLAEALLDQISRCTNP 395 (764)
Q Consensus 325 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 395 (764)
.|.+..|..+.......-.++.|...|-.... .|++. +...-.+=+.+| -|++++|++++-++..+ |
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr-D- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR-D- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh-h-
Confidence 57777787777777666677777776655543 22321 111111122222 27888888888777665 2
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHhhc--cCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHH------HHH-
Q 004279 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA------IEM- 466 (764)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~- 466 (764)
..|..+.+.|++-...++++.--.+ -.--...++.+-..++....++++.+.+..-...+...+ .+.
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 2334444555554444444321100 000011222222222222233333333222111111100 011
Q ss_pred -HHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 004279 467 -DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545 (764)
Q Consensus 467 -~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 545 (764)
+.....++.+....-.+.+++.+.|.-++|.+.|-+.+.+. +.+.+|...+++.+|.++-++..- |...
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk------aAv~tCv~LnQW~~avelaq~~~l----~qv~ 910 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK------AAVHTCVELNQWGEAVELAQRFQL----PQVQ 910 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH------HHHHHHHHHHHHHHHHHHHHhccc----hhHH
Confidence 12233455666777778889999999888888876653322 345667777778888877665432 2222
Q ss_pred HHH--------------HHHHHHHccCChhHHHHHHHHHHHC----CCCCCHH----HHHHH-HHHH----------Hhc
Q 004279 546 TYN--------------IMIDCCSIIRCFKSASALVSMMVRD----GFYPQTM----TYTAL-IKIL----------LDY 592 (764)
Q Consensus 546 t~~--------------~ll~~~~~~~~~~~a~~~~~~~~~~----g~~p~~~----~~~~l-i~~~----------~~~ 592 (764)
|.. -.|..+.+.|..-.|-+++.+|.+. +.+|-.. ...+| +.-+ -+.
T Consensus 911 tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~ 990 (1189)
T KOG2041|consen 911 TLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKH 990 (1189)
T ss_pred HHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 211 1233445566665666666666532 3332211 11111 1111 134
Q ss_pred CCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHH
Q 004279 593 GDFDEALNLLDLVSLE---GIP------HDVLLYNTILKKACEKGRIDVIEFIIEQMHQN-KVQPDPSTCHFVF 656 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~---~~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll 656 (764)
|..++|.++++..... .+. .....|..|..--...|.++.|...--.+.+. .+-|....|..+.
T Consensus 991 g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 991 GFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred CcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 6666666655543211 010 11234445555556778888888765555543 3555555555443
No 163
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.57 Score=50.40 Aligned_cols=157 Identities=10% Similarity=0.026 Sum_probs=81.4
Q ss_pred HHHhcCCcchHHHHHHHhh--------hccCCCCcchHHHH-----HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004279 61 DALCRGERSRASHLLLNLG--------HAHHSLGADDFFHI-----LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (764)
++.+.-++++-+++.+.+. .-|++.+..-|.++ +.-+...+.+..|+++...+...-... ..+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 3444555666555555443 33555555555544 333344466777777776664322111 556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCC--CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC----CChhhHHHHHH
Q 004279 128 MMQALCKGGYLEEASNLIYFLGERYGI--YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG----KNEVTYTELLK 201 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~ 201 (764)
....+.+..+..+ ..+++.+.++.+. .| ..+|..+.+..-..|+.+-|..+++.=.+.+-+ .+..-+...+.
T Consensus 477 Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~-~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 477 WARRKIKQSDKMD-EEVLDKIDEKLSAKLTP-GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHhccCccc-hHHHHHHHHHhcccCCC-ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 6666666533221 2333333333332 22 346777777667788888888877653322111 12223444555
Q ss_pred HHHhccChhHHHHHHHHHH
Q 004279 202 LAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~ 220 (764)
-+...||.+....++-.+.
T Consensus 555 kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHhcCCchhHHHHHHHHH
Confidence 5566666666555555444
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.09 E-value=0.011 Score=49.72 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=47.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHH
Q 004279 90 FFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLG 166 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~ 166 (764)
+..+...+.+.|+++.|.+.|+.+.+..- +.....+..+..++.+.|++++|...|+.+....+-.+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444444555555555555555554321 00122344455555555555555555555543221111 1223444455
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 004279 167 ACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~ 187 (764)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555666666665555554
No 165
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.08 E-value=0.4 Score=48.23 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 004279 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY-NTILK 622 (764)
Q Consensus 545 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~ 622 (764)
..|...+++..+...++.|..+|-++.+.| +.+++..++++|.-++. |+..-|.++|+.-... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777778888999999999999888 67889999999988775 7778899999875432 3454443 45666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 623 KACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 623 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
-+..-++-+.|..+|+...+. +.-+ ...|..+|.-=+.-|+...+..+=++|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677888989999999966542 3333 56788888877888999888887777654
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.06 E-value=0.014 Score=52.75 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004279 541 PPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
..|..+|..++..|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-
Confidence 45777777777777643 6667777778888888888888888888887765 322 1221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004279 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 664 (764)
.+.++..-|- .+.+-|++++++|...|+.||..++..|++++.+.+.
T Consensus 107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111121 2345677788888888888888888888877776664
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.05 E-value=0.031 Score=48.23 Aligned_cols=88 Identities=9% Similarity=-0.070 Sum_probs=48.8
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004279 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+...|++++|..+|+-.....+. +..-|..|--++-..|++++|...|.....-.+.|+..+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 334455555555555555543211 2233334444444555555666555555555555666666666666667777777
Q ss_pred HHHHHHHHH
Q 004279 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~m~~ 255 (764)
.+.|+....
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 777766654
No 168
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.67 Score=49.87 Aligned_cols=329 Identities=13% Similarity=0.118 Sum_probs=182.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL--RNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~ 372 (764)
+-..+|.-+...+.+..|+++-.-+...-..- ...|.....-+.+..+. +++.+..++=...... ....|..+..-
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~ 516 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARR 516 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHH
Confidence 44567888888999999999887775321111 34444444444444322 2233322222222223 45567788888
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-------CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhcCCCCc
Q 004279 373 CSKALELDLAEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445 (764)
Q Consensus 373 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~ 445 (764)
.-.+|+.+.|..+++.=+..+ +..-+...+.-..+.|+.+-...++-+|... -+...|...+.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~--~~~s~l~~~l~-------- 586 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK--LNRSSLFMTLR-------- 586 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH--HHHHHHHHHHH--------
Confidence 888999999999887654433 4444666777788888888888887777651 11111111111
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHH-CCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhc-----CCCCChhhHHHHHHHH
Q 004279 446 YEEGNMFSQVDSAKRINAIEMDMAR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-----KTPLGTPTYNTVLHSL 519 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~li~~~ 519 (764)
.......++.+..+ .+- ..+-+.|-...+...+-.+.-+. ...+-........+.+
T Consensus 587 -----------~~p~a~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 587 -----------NQPLALSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred -----------hchhhhHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 11111122222211 111 11222232222222222221111 0011111222223333
Q ss_pred HHcCC----------hhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004279 520 VEAQE----------SHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 520 ~~~~~----------~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
++... ..+-+.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+. -.||-..|-.=+.+
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~a 724 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHH
Confidence 33322 1112222333322 132333445555566677778888888877665 34788888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 004279 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 668 (764)
++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+++.+.. |.. -...+|.+.|++.+|
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHH
Confidence 999999988887776643 25677778889999999999998887653 221 356788899998888
Q ss_pred HHHH
Q 004279 669 MEAL 672 (764)
Q Consensus 669 ~~~~ 672 (764)
.+.-
T Consensus 790 ad~A 793 (829)
T KOG2280|consen 790 ADLA 793 (829)
T ss_pred HHHH
Confidence 7654
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.02 E-value=0.008 Score=47.82 Aligned_cols=93 Identities=12% Similarity=-0.003 Sum_probs=47.7
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhcc
Q 004279 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+...|++++|...++...+.... +...+..+...+...++++.|.+.++...+..+.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344555556666666666666666554211 2234444444455555555555555555544444444444555555555
Q ss_pred CCHHHHHHHHHHHH
Q 004279 241 RDLKSAYETLQHMV 254 (764)
Q Consensus 241 g~~~~A~~~~~~m~ 254 (764)
|+.+.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555544443
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.02 E-value=0.026 Score=55.96 Aligned_cols=206 Identities=12% Similarity=0.074 Sum_probs=133.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC-----cchHHHHHHHhhCCCChhHHHHHHHHHHH----cCc
Q 004279 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG-----ADDFFHILNYCARSPDPLFVMETWRMMEE----KEI 118 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~ 118 (764)
.+.....+......|...++|++|.+.|.+........+ ...|.....+|.+. +++.|.+.+++... .|
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G- 108 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG- 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence 345566777778889999999999999988754321111 12366666666555 89999999988765 33
Q ss_pred cccH--HHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 004279 119 GLNN--KCYLLMMQALCKG-GYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK 191 (764)
Q Consensus 119 ~~~~--~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (764)
.++. ..+..+...|... |++++|++.|++..+-.....+ ..++..+...+.+.|++++|.++|++....-...
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 3333 3677888889888 9999999999887542211111 2356778888999999999999999987653221
Q ss_pred -----Chh-hHHHHHHHHHhccChhHHHHHHHHHHccC---C--CCHHhHHHHHHHhhcc--CCHHHHHHHHHHHHH
Q 004279 192 -----NEV-TYTELLKLAVWQKNLSAVHEIWEDYIKHY---S--LSIFSLRKFVWSFTRL--RDLKSAYETLQHMVA 255 (764)
Q Consensus 192 -----~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~ 255 (764)
+.. .|-..+-++...||+..|.+.++...... . ........|+.++-.. ..+..|+.-|+.+.+
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 121 22233335667899999999999988642 2 2244566777777543 356667666666544
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.01 E-value=0.021 Score=49.16 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004279 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
+-.....+...|++++|..+|+.+...+ +-+..-|..|.-+|...|++..|++.|......+ +-|+..+..+...+..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344666778899999999999888765 3344445566666667799999999999988886 4677788888888999
Q ss_pred cCCHHHHHHHHHHHhhh
Q 004279 135 GGYLEEASNLIYFLGER 151 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~ 151 (764)
.|+.+.|++-|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999998877653
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.99 E-value=0.026 Score=51.19 Aligned_cols=91 Identities=7% Similarity=-0.257 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 004279 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
...+..+...+...|++++|...|++..+...-.++ ...+..+...+.+.|++++|...++...+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 345666777777788888888888877643221221 346777777777788888888888777764221 334444444
Q ss_pred HHHHhccChhHHH
Q 004279 201 KLAVWQKNLSAVH 213 (764)
Q Consensus 201 ~~~~~~~~~~~a~ 213 (764)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 4555555544433
No 173
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.94 E-value=0.011 Score=53.47 Aligned_cols=106 Identities=15% Similarity=0.220 Sum_probs=70.7
Q ss_pred CCCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 004279 505 TPLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 579 (764)
...+-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+ |.+ .|..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n 106 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN 106 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc
Confidence 345666777777777654 6677777888899999999999999999998765 322 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004279 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
. +-++..-|- .+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 107 ~-fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 F-FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred H-HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 111111111 2345677777777777777887777777777766654
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.91 E-value=0.19 Score=48.19 Aligned_cols=175 Identities=13% Similarity=0.032 Sum_probs=100.5
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCc-ch---HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004279 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA-DD---FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
....+...|++++|++.|+.+.... |.. .. ...+..++.+.++++.|...+++..+........-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3555667788888888888887654 332 22 13445666777888888888888877642111122222222222
Q ss_pred c--cC---------------C---HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004279 134 K--GG---------------Y---LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 134 ~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
. .+ + ..+|...|+.+.++ |-...-..+|..-+..++.. .-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~---la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDR---LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHH---HHH
Confidence 1 11 1 12333444444333 22223344444444333321 000
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHccCC---CCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004279 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
.. -.+.+.|.+.|.+..|..-++.+++..+ ....+...++.+|.+.|..+.|..+...+.
T Consensus 177 ~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 1345568888899889999999887644 445567778889999999999988776554
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.91 E-value=0.0024 Score=49.70 Aligned_cols=80 Identities=13% Similarity=-0.092 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhccChhHHH
Q 004279 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE-VTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~ 213 (764)
.|+++.|+.+|+++.+.....++...+-.+..+|.+.|++++|..+++. ... .|+. ...-.+..++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677888888887766543222334445577777778888888887777 222 2222 22223344455555555555
Q ss_pred HHHH
Q 004279 214 EIWE 217 (764)
Q Consensus 214 ~~~~ 217 (764)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.18 Score=52.81 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCH
Q 004279 362 QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429 (764)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~ 429 (764)
+..+...+...+.+...+..|-++|..|.+. ..++......+++.+|+.+-+...+ ..||.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe-~~~dV 806 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPE-FKDDV 806 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcc-ccccc
Confidence 3344555555566667788888888888754 4567778888899999888776655 44554
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.90 E-value=0.022 Score=51.49 Aligned_cols=85 Identities=9% Similarity=-0.248 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHH-cCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHH
Q 004279 103 PLFVMETWRMMEE-KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLC 180 (764)
Q Consensus 103 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 180 (764)
+..+...+..+.+ .+.......|..+...+...|++++|+..|++.....+-++ ...+|..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432 22222234455556666666777777777666643221111 123556666666666666666666
Q ss_pred HHHHHhc
Q 004279 181 LDLMDSR 187 (764)
Q Consensus 181 ~~~m~~~ 187 (764)
++.....
T Consensus 95 ~~~Al~~ 101 (168)
T CHL00033 95 YFQALER 101 (168)
T ss_pred HHHHHHh
Confidence 6666553
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.88 E-value=0.15 Score=44.68 Aligned_cols=103 Identities=12% Similarity=-0.054 Sum_probs=47.1
Q ss_pred CCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004279 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 164 (764)
|+...-..|..+....|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+-..-..+..+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33333334444555555555555555554443333444444455555555555555555555544322111111133334
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 004279 165 LGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
.+.|...|....|+..|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 44455555555555555555443
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.87 E-value=0.044 Score=49.71 Aligned_cols=89 Identities=15% Similarity=-0.015 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004279 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN--AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
..+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3556666666677777777777777665432221 2455555566666666666666666666532 113444445555
Q ss_pred HHHhcCCHHHHH
Q 004279 588 ILLDYGDFDEAL 599 (764)
Q Consensus 588 ~~~~~g~~~~A~ 599 (764)
.|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544433
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.85 E-value=0.087 Score=49.16 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccC--CCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH
Q 004279 49 ESISKATQMQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL 126 (764)
Q Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (764)
+.+...+-.....+...|++++|+..|+.+..... +........+..++-+.|+++.|...++.+++.........+.
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 33444455557778899999999999999987642 1222346677788889999999999999988863111111222
Q ss_pred HHHHHHHcc-------------CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004279 127 LMMQALCKG-------------GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 127 ~li~~~~~~-------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
..+.+.+.. +...+|...|+ .++.-|-...-..+|...+..+... .-.
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~----------------~li~~yP~S~y~~~A~~~l~~l~~~---la~ 142 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE----------------ELIKRYPNSEYAEEAKKRLAELRNR---LAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH----------------HHHHH-TTSTTHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHH----------------HHHHHCcCchHHHHHHHHHHHHHHH---HHH
Confidence 222222211 11223344444 4444444455555665555554432 011
Q ss_pred hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHH---hHHHHHHHhhccCCHHHH
Q 004279 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF---SLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 246 (764)
. --.+.+.|.+.|.+..|..-++.+++..+.+.. +.-.++.+|.+.|..+.|
T Consensus 143 ~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 H-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp H-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred H-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1 122456678888888888888888887555544 456667778888877644
No 181
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.85 E-value=0.013 Score=60.02 Aligned_cols=90 Identities=12% Similarity=-0.076 Sum_probs=51.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+...|++++|+++|++.++.+ +-+...|..+..++...|+++.|+..++.+++.+ +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344455566666666666666554 2334445555555666666666666666666553 33445555566666666666
Q ss_pred HHHHHHHHHHhh
Q 004279 139 EEASNLIYFLGE 150 (764)
Q Consensus 139 ~~A~~~~~~~~~ 150 (764)
++|+..|++..+
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.81 E-value=0.03 Score=50.59 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004279 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYP--QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623 (764)
Q Consensus 546 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 623 (764)
.|..+...+...|++++|...|+........| ...+|..+...|...|++++|++.+++..... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34444445555566666666666665432111 12355566666666666666666666665431 1123344444444
Q ss_pred HH-------HcCCHHHHHHHHH
Q 004279 624 AC-------EKGRIDVIEFIIE 638 (764)
Q Consensus 624 ~~-------~~g~~~~a~~~~~ 638 (764)
+. ..|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 5555554433333
No 183
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.80 E-value=0.024 Score=58.06 Aligned_cols=103 Identities=20% Similarity=0.104 Sum_probs=76.9
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004279 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
...+...|+++.|++.|++.++.+ +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 344556788889999998888875 4566778888888888899999999888887543 2355577888888888899
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004279 174 MVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
+++|+..|+...+. .|+.......+.
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999988888874 455555444443
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.067 Score=50.86 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=83.9
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCcc
Q 004279 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+.+.+++.+|...|...++-.+.|.+-|..-..+|++.|..+.|++--+.... +.|.-
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~y-------------------- 148 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHY-------------------- 148 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHH--------------------
Confidence 56788899999999999998889999999999999999999999888888776 44443
Q ss_pred CCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004279 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 338 (764)
..+|..|-.+|...|++++|++.|++.++ +.|+..+|-.=+...
T Consensus 149 ----------skay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 149 ----------SKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred ----------HHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 25899999999999999999999988877 478888776655443
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.15 Score=47.37 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH-----H
Q 004279 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA-----T 368 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~ 368 (764)
..-+.++..+.-.|.+.-...++.+.++...+.+......|.+.-.+.||.+.|...|+...+..-+.|..+.+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35566777777778888888888888876655566667777777778888888888888776644333443333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHH
Q 004279 369 LSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436 (764)
Q Consensus 369 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll 436 (764)
....|.-.+++..|...++++.... +++.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~-~~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ-QDPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc-cCCccchhhhHH
Confidence 3344556678888888888877654 555555544455556888899998888887 446665555544
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.66 E-value=0.0091 Score=43.67 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=44.0
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhccc
Q 004279 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 261 (764)
..+...|++++|.+.|+.+.+..+.+...+..+..++...|++++|..+|+++.+ ..|+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 4566777777777777777777777777888888888888888888888888876 4444
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.65 E-value=0.023 Score=53.90 Aligned_cols=86 Identities=10% Similarity=-0.081 Sum_probs=40.0
Q ss_pred HHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004279 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
.+++++++++|+..|...++.. +-++.-|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3444455555555555554443 2333334444445555555555554444444442 2223345555555555555555
Q ss_pred HHHHHHHH
Q 004279 141 ASNLIYFL 148 (764)
Q Consensus 141 A~~~~~~~ 148 (764)
|++.|.+.
T Consensus 168 A~~aykKa 175 (304)
T KOG0553|consen 168 AIEAYKKA 175 (304)
T ss_pred HHHHHHhh
Confidence 55554444
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.63 E-value=0.14 Score=55.17 Aligned_cols=142 Identities=13% Similarity=0.046 Sum_probs=83.8
Q ss_pred CCCChhhHHHHHHHHHHcC-----ChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccC--------ChhHHHHHHHHH
Q 004279 505 TPLGTPTYNTVLHSLVEAQ-----ESHRAMEIFKQMKTCGIPPNA-ATYNIMIDCCSIIR--------CFKSASALVSMM 570 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~~~-----~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~--------~~~~a~~~~~~~ 570 (764)
.+.+...|...+.+..... ....|..+|++..+. .|+- ..|..+..++.... ++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4556677877777754432 266888888888875 4553 33433333222111 122333333332
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004279 571 VRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 571 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
... ....+...|.++.-.....|++++|...+++.... .|+...|..+...|...|+.++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 222 12334456666655555667777777777777754 36667777777777777777777777777764 55665
Q ss_pred hhH
Q 004279 650 STC 652 (764)
Q Consensus 650 ~~~ 652 (764)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 554
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.62 E-value=0.071 Score=44.27 Aligned_cols=93 Identities=12% Similarity=-0.103 Sum_probs=52.5
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCcccc--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHh
Q 004279 93 ILNYCARSPDPLFVMETWRMMEEKEIGLN--NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACA 169 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 169 (764)
+..++-..|+.++|+.+|++....|.... ...+-.+.++|...|++++|..+|+......+-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 33445566777777777777777664433 23455666677777777777777776654321100 1111112223455
Q ss_pred ccCCHHHHHHHHHHHH
Q 004279 170 KLHSMVHANLCLDLMD 185 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~ 185 (764)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777665544
No 190
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.60 E-value=0.98 Score=45.74 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 004279 595 FDEALNLLDLVSLEGIPHDV----LLYNTILKK--ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 668 (764)
+.+-.++-+-+.+.|++|-. ..-|.|.++ +..+|++.++.-.-..+. .+.|++.+|..+--.+....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 33344444444445665522 233344333 345677777766555555 3677777766555566667777777
Q ss_pred HHHHHHHH
Q 004279 669 MEALQVLS 676 (764)
Q Consensus 669 ~~~~~~~~ 676 (764)
.+++..+.
T Consensus 515 ~~~l~~LP 522 (549)
T PF07079_consen 515 WEYLQKLP 522 (549)
T ss_pred HHHHHhCC
Confidence 77777654
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.53 E-value=0.39 Score=46.16 Aligned_cols=186 Identities=9% Similarity=-0.017 Sum_probs=110.5
Q ss_pred CcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHH---HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004279 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY---LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 162 (764)
++..+-.....+...|+++.|.+.|+.+.... +-+.... -.+..+|.+.+++++|...|++..+.++-.|++ .|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 33333334444556789999999999998864 2223332 355677889999999999999988776655554 344
Q ss_pred HHHHHHhc--c---------------CC---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHcc
Q 004279 163 SFLGACAK--L---------------HS---MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 163 ~li~~~~~--~---------------g~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
..+.+.+. . .| ...|+..|+.+.+. -|++. -..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH
Confidence 44444331 1 11 23455555555554 33332 122222222222111
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHH
Q 004279 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 302 (764)
.. ..--.+...|.+.|.+..|..-|+.+.+. -|+.+.. ..+...++.+
T Consensus 174 la---~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~---------------------------~eal~~l~~a 221 (243)
T PRK10866 174 LA---KYELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQAT---------------------------RDALPLMENA 221 (243)
T ss_pred HH---HHHHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchH---------------------------HHHHHHHHHH
Confidence 00 00113455688999999999999999873 2322111 1366678899
Q ss_pred HHccCCHHHHHHHHHHHH
Q 004279 303 CGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 303 ~~~~g~~~~a~~~~~~m~ 320 (764)
|...|..++|.++...+.
T Consensus 222 y~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 222 YRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHcCChHHHHHHHHHHh
Confidence 999999999988777654
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.52 E-value=0.98 Score=44.74 Aligned_cols=286 Identities=13% Similarity=0.047 Sum_probs=180.8
Q ss_pred HHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHH--HHHHHHHHHccCC
Q 004279 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKC--YLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 137 (764)
..-.|+-..|.++-.+-.+. ..-|...+..||.+-. -.|+++.|.+-|+-|... |.... ...|.-.--+.|+
T Consensus 94 AagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 94 AAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhccc
Confidence 34567878887776654321 2345556666665433 459999999999999753 33222 2233334457799
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChhh--HHHHHHHHHh---ccChhH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVT--YTELLKLAVW---QKNLSA 211 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~~~~~---~~~~~~ 211 (764)
.+.|.++-++..++-. -=...+.+++...|..|+++.|+++++.-+... +.++..- -..|+.+-.. .-|...
T Consensus 170 reaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 170 REAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred HHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 9999988887754422 123578889999999999999999998876653 3455442 2334443221 234445
Q ss_pred HHHHHHHHHccCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchh
Q 004279 212 VHEIWEDYIKHYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|...-.+..|- .|| ...--.-..++.+.|+..++-++++.+-+....|+.
T Consensus 248 Ar~~A~~a~KL-~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---------------------------- 298 (531)
T COG3898 248 ARDDALEANKL-APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI---------------------------- 298 (531)
T ss_pred HHHHHHHHhhc-CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----------------------------
Confidence 55555554442 233 223334456788999999999999999885444443
Q ss_pred hhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHH
Q 004279 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 368 (764)
.++..+.+.|+. +++-+++.... .++||. ...-.+..+....|++..|..--+.... ..|....|..
T Consensus 299 -------a~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lL 367 (531)
T COG3898 299 -------ALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLL 367 (531)
T ss_pred -------HHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHH
Confidence 233445555654 33333333221 134544 4556677788888998888776655544 4667788887
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhhCC
Q 004279 369 LSVECSKA-LELDLAEALLDQISRCT 393 (764)
Q Consensus 369 li~~~~~~-g~~~~A~~~~~~~~~~~ 393 (764)
|.+.-.-. |+-.++...+.+....+
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCC
Confidence 77765544 99999999998887765
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.50 E-value=0.13 Score=42.76 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=51.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 004279 516 LHSLVEAQESHRAMEIFKQMKTCGIPPN--AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKIL 589 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~ 589 (764)
..++-..|+.++|+.+|++....|.... ...+..+-..+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445566777777777777777665443 2344455556666777777777776666542 22 11112233355
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004279 590 LDYGDFDEALNLLDLVS 606 (764)
Q Consensus 590 ~~~g~~~~A~~~~~~m~ 606 (764)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66677777777665544
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.50 E-value=1.2 Score=45.27 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHH----ccCChhHHHHHHHHHHHCCCCC
Q 004279 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-------IMIDCCS----IIRCFKSASALVSMMVRDGFYP 577 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~-------~ll~~~~----~~~~~~~a~~~~~~~~~~g~~p 577 (764)
+.++..++....+.++..+|-..+.-+.-. .|+...-. .+-+..+ ...+...-+.+|+......+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 347888888889999999998888776553 34332111 1111111 1123344456666666554321
Q ss_pred C-HHHH-HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCC-CHHHHHHH----HHHHH---HcCCHHHHHHHHHHHHHCCCC
Q 004279 578 Q-TMTY-TALIKILLDYGD-FDEALNLLDLVSLEGIPH-DVLLYNTI----LKKAC---EKGRIDVIEFIIEQMHQNKVQ 646 (764)
Q Consensus 578 ~-~~~~-~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p-~~~~~~~l----i~~~~---~~g~~~~a~~~~~~m~~~~~~ 646 (764)
- .++| .--..-+-+.|. -++|+++++.+.. +.| |...-|.+ =.+|. ....+.+-..+-+-..+.|+.
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 1 1111 222334556665 8899999999884 344 33333322 22332 223456667776777778887
Q ss_pred CC----HhhHHHHHH--HHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHHHhhh
Q 004279 647 PD----PSTCHFVFS--GYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCED 715 (764)
Q Consensus 647 p~----~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (764)
|- ...-+.|-. -+...|++.++.-+-..+.+ +.| +....+-.--.+....+-..+|..+..+..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaP---S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAP---SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCC---cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 73 344555554 45678999998876665543 444 222222222233344455677888877665
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.43 E-value=0.011 Score=43.72 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004279 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 654 (764)
+.|++++|+++|+++.... +-+...+..+...|.+.|++++|..+++++.. ..|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHH
Confidence 4556666666666655432 22445555566666666666666666666553 3455444433
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.18 Score=46.80 Aligned_cols=121 Identities=9% Similarity=-0.139 Sum_probs=51.9
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHH-----HHHHHHHHccCCHH
Q 004279 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY-----LLMMQALCKGGYLE 139 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~ 139 (764)
.+.+.-.++++.++++.+.+.++.....|.+.-.+.||.+.|...|++..+..-..|.... -.....|.-++++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 3444445555555555443444444455555555555555555555544432211221111 12222334444555
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004279 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+|...|+++...+. .|...-|.-.-+..-.|+...|++.++.|.+.
T Consensus 270 ~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 270 EAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55555555544332 12222222222222334555555555555543
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.41 E-value=0.28 Score=52.81 Aligned_cols=136 Identities=7% Similarity=-0.124 Sum_probs=75.8
Q ss_pred CCCcchHHHHHHHhhC--C---CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc--------CCHHHHHHHHHHHhh
Q 004279 84 SLGADDFFHILNYCAR--S---PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG--------GYLEEASNLIYFLGE 150 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~ 150 (764)
+.+...|...+++... . ++...|+++|++..+.+ +-+...|..+..+|... .++..+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4566677777765432 2 23557888888888774 22334444433333221 112333333333222
Q ss_pred hcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHcc
Q 004279 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 151 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
....+.+...|.++.-.+...|++++|...|++..... |+...|..+...+...|+.++|.+.+++...-
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11122233456666555556677777777777777653 56666777777777777777777777666553
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.36 E-value=0.018 Score=42.70 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC-CHHHHHHHHHHHHH
Q 004279 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR-DLKSAYETLQHMVA 255 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 255 (764)
..+|..+-..+...|++++|...|++.++..+.++..+..+..+|.+.| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455666666667777777777777777766667777777777888887 68888888887766
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.35 E-value=0.65 Score=40.88 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH
Q 004279 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE---GIPHDVLL 616 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~ 616 (764)
+.|+...-..|-.+....|+..+|...|++...--+.-|....-.+.++....+++..|...++.+.+. +-.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 467777777888899999999999999999888767778888888888999999999999999988753 23344 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.-.+.+.+...|..+.|+..|+...+ .-|+...-...-..+.+.|+..++..-+..+..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45577888899999999999999986 556665544445577888888887655555443
No 200
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=2.6 Score=46.34 Aligned_cols=151 Identities=12% Similarity=0.034 Sum_probs=94.9
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004279 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN--KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
....-|....+...++.|+.+-. ..+.+++. .......+-+-+.|++++|...+-+-.. -+.|. .+|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHH
Confidence 34555555566666666665533 33332222 1223334445578999999887765542 22332 4666
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004279 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
-|....++..-..+++.+.+.|+. +...-..||.+|.+.++.++..++.+...+|.. .+.....+..+-+.+-.+.|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHH
Confidence 777778888888889999988876 666667899999999999988888776654421 12234445555566666666
Q ss_pred HHHHHH
Q 004279 247 YETLQH 252 (764)
Q Consensus 247 ~~~~~~ 252 (764)
..+-..
T Consensus 483 ~~LA~k 488 (933)
T KOG2114|consen 483 ELLATK 488 (933)
T ss_pred HHHHHH
Confidence 555443
No 201
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=1.6 Score=43.82 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=32.5
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+.-.++.+.|.+.-..+.+-...+....-.-..++--.++.+.|...|++.+.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ 231 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR 231 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc
Confidence 44567777777766666655444444433333344556777778777777766
No 202
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.19 E-value=0.06 Score=45.18 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH--------------hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004279 122 NKCYLLMMQALCKGGYLEEASNLIYFL--------------GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
..++..++.++++.|+++....+++.. ....+..|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345555666666666666666555433 223345566666666666666666666666666665543
Q ss_pred -CCCCChhhHHHHHHHH
Q 004279 188 -MVGKNEVTYTELLKLA 203 (764)
Q Consensus 188 -g~~p~~~t~~~ll~~~ 203 (764)
+++-+..+|..|++-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 5555566666666543
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.18 E-value=0.015 Score=42.94 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=30.9
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..|++++|.++++.+.+..|.+...+..+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666555555666666666666666666666666666655
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.17 Score=44.32 Aligned_cols=71 Identities=17% Similarity=-0.016 Sum_probs=51.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCChhhH
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVTY 196 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 196 (764)
+...++..+...|++++|..+.+.+...+ +-|...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 56677778888899999999999887665 34677899999999999999999999988754 3788877653
No 205
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.15 E-value=1.6 Score=43.18 Aligned_cols=61 Identities=10% Similarity=-0.097 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhccChh---HHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 195 TYTELLKLAVWQKNLS---AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++..+..++...+..+ +|..+++.+.+..+..+..+-.-+.++.+.++.+.+.+.+.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3444555555554443 344444444443443444444445555556666666677766665
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.10 E-value=0.56 Score=49.33 Aligned_cols=259 Identities=13% Similarity=0.135 Sum_probs=135.4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 004279 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405 (764)
Q Consensus 326 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 405 (764)
|....+.+=+-.+...|.+++|.++- -.|+ ...-|.-|.......=+++-|++.+.+....
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia----clgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA----CLGV--TDTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc----ccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 44445555556666777777765431 1122 2222333333333334444454444444332
Q ss_pred hcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 004279 406 DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484 (764)
Q Consensus 406 ~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (764)
.+-+.+.-+++|++ |-.|+....... |+-.|.+.++.++|..-+...++.+
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iLlA~~---~Ay~gKF~EAAklFk~~G~enRAlE--------------------- 666 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLLLADV---FAYQGKFHEAAKLFKRSGHENRALE--------------------- 666 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHHHHHH---HHhhhhHHHHHHHHHHcCchhhHHH---------------------
Confidence 34445556677777 777877655443 3444555566555544433333333
Q ss_pred HHHhccCcHHHHHHHHHhcCCC-------------CChhhHHHHHHHHHHcCChhHHHHHHHH------HHhCCCC---C
Q 004279 485 KALGAEGMIRELIQYFCDSKTP-------------LGTPTYNTVLHSLVEAQESHRAMEIFKQ------MKTCGIP---P 542 (764)
Q Consensus 485 ~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~~li~~~~~~~~~~~A~~l~~~------m~~~g~~---p 542 (764)
+|.....++.|.+++.....+ .++.-=-+....+...|+..+|..+.-+ +.+-+-+ .
T Consensus 667 -myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ 745 (1081)
T KOG1538|consen 667 -MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA 745 (1081)
T ss_pred -HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh
Confidence 333333334443333221000 0111111334455556776666654321 1111112 2
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------
Q 004279 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL------- 615 (764)
Q Consensus 543 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------- 615 (764)
+..+...+...+-+...+..|-++|..|-.. ..+++.....+++++|..+-++.. .+.||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP--e~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP--EFKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc--cccccccchHHHHh
Confidence 3344444444455566677788888777442 356777788889999988888765 3345532
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004279 616 ----LYNTILKKACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 616 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 643 (764)
-|.-.-.+|.++|+-.+|..+++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344456778888888888888887653
No 207
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.07 E-value=0.019 Score=41.92 Aligned_cols=52 Identities=10% Similarity=-0.153 Sum_probs=20.1
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004279 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
+.+.|++++|+..|+++.+.. +-+...+..+..++.+.|++++|...|+.+.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444443221 1122333344444444444444444444443
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.07 E-value=0.14 Score=50.63 Aligned_cols=287 Identities=9% Similarity=-0.087 Sum_probs=136.2
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcch----HHHHHHHhhCCCChhHHHHHHHHHH--Hc--Cc-cccHHHHHHHH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADD----FFHILNYCARSPDPLFVMETWRMME--EK--EI-GLNNKCYLLMM 129 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~li 129 (764)
..-+++.|+.+..+.+|+...+.| .-|..+ |..|..+|.-.+|++.|++++..=+ .+ |- .-...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 345677788888888888877766 233332 5555666666677777776654311 11 10 11223334455
Q ss_pred HHHHccCCHHHHHHHHHHHhh---hcCC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 004279 130 QALCKGGYLEEASNLIYFLGE---RYGI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
+.+--.|.+++|...-.+-.. ..|- ......+-.|...|...|+.-.-.. -.+.|-.|+.++
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT---------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH----------
Confidence 555555666666554332211 0000 0011122223444433332210000 000111122111
Q ss_pred ccChhHHHHHHHHHHcc------CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCC
Q 004279 206 QKNLSAVHEIWEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
..++.|.++|..-.+- -..--..|..|.+.|.-.|+++.|+...+.-.+......+
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD----------------- 230 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD----------------- 230 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-----------------
Confidence 0112233333222210 1112235667777778888999998877664432211111
Q ss_pred CccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004279 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS----LGL-QPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
+-..+.++..+..++.-.|+++.|.+.|+.-.. .|- ........+|-+.|.-..++++|+.++..-
T Consensus 231 ---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 231 ---------RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred ---------HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 001124778888888889999999888876532 221 112233445556666666666666666543
Q ss_pred HHC-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004279 355 QQN-----NLKPQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 355 ~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 387 (764)
... ...-....+-+|..+|...|..+.|+.+..
T Consensus 302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 221 011122334444455555555555444433
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.02 E-value=0.78 Score=42.79 Aligned_cols=180 Identities=11% Similarity=0.015 Sum_probs=92.7
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004279 92 HILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
.....+...|++..|.+.|+.+..... +--....-.++.++-+.|+++.|...+++..+..+-.|.. .+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 344445567888888888888877521 1223445566777888888888888888877665444432 2333333333
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCC
Q 004279 170 KLHSMVHANLCLDLMDSRMVGKNE-------VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
......... ....|. .++..++.-|=.+.-..+|...+..+..... ..--.+...|.+.|.
T Consensus 89 ~~~~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la---~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 89 YYKQIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA---EHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHCTT-
T ss_pred HHHhCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHccc
Confidence 221111110 001111 1233333333333334444443333322100 011224567889999
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHH
Q 004279 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 313 (764)
+..|..-++.+.+. -|+.... ..+.-.++.+|.+.|..+.+.
T Consensus 157 y~aA~~r~~~v~~~--yp~t~~~---------------------------~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 157 YKAAIIRFQYVIEN--YPDTPAA---------------------------EEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHH--STTSHHH---------------------------HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCchH---------------------------HHHHHHHHHHHHHhCChHHHH
Confidence 99999999999883 3333111 136667888888888877443
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.99 E-value=0.043 Score=54.05 Aligned_cols=137 Identities=9% Similarity=-0.067 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHc-----c-CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccc
Q 004279 195 TYTELLKLAVWQKNLSAVHEIWEDYIK-----H-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 268 (764)
.|..|-+.|.-.|+++.|....+.-.. + -.....++..|.++++-.|+++.|.+.|+......+.-..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~------ 270 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN------ 270 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc------
Confidence 445555555667777777766655442 1 1223346777888888888888888888776543222211
Q ss_pred cccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCcccHHHHHHHHHhcCC
Q 004279 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----G-LQPSSHTYDGFIRAIVSDRG 343 (764)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~t~~~li~~~~~~~~ 343 (764)
+.+.+.+..+|...|.-...+++|+..+.+-... + ..-...++.+|-.++...|.
T Consensus 271 --------------------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 271 --------------------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred --------------------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 1111235556777777778888888887664321 1 12245678889999999999
Q ss_pred hhHHHHHHHHHHHC
Q 004279 344 LRNGMEVLKIMQQN 357 (764)
Q Consensus 344 ~~~a~~~~~~m~~~ 357 (764)
-+.|+.+...-.+.
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877766553
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=1.5 Score=43.87 Aligned_cols=263 Identities=9% Similarity=-0.076 Sum_probs=150.1
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcch
Q 004279 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 89 (764)
+......|-++.++.+|+ ..|...++..|+. ...|...+..++..+++++|.--.++-.+.. +-.+..
T Consensus 52 ~k~~gn~~yk~k~Y~nal----------~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~ 119 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNAL----------KNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKG 119 (486)
T ss_pred HHhhcchHHHHhhHHHHH----------HHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecC-CCcccc
Confidence 334455566777777777 6666677778887 4444455666777888888877766554332 111223
Q ss_pred HHHHHHHhhCCCChhHHHHHHHH---------------HHHcCc-cccHHHHHHHH-HHHHccCCHHHHHHHHHHHhhhc
Q 004279 90 FFHILNYCARSPDPLFVMETWRM---------------MEEKEI-GLNNKCYLLMM-QALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~---------------~~~~~~-~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~ 152 (764)
+.-.-+++...++...|.+.++. ...... +|....|..+- ..+.-.|++++|...--.+.+.+
T Consensus 120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 33344444444444444433331 111111 12233443332 23456788888888766665432
Q ss_pred CCCCChhhhHHHHHHHh--ccCCHHHHHHHHHHHHhcCCCCChhhH---HHHHH----------HHHhccChhHHHHHHH
Q 004279 153 GIYPILPVYNSFLGACA--KLHSMVHANLCLDLMDSRMVGKNEVTY---TELLK----------LAVWQKNLSAVHEIWE 217 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~----------~~~~~~~~~~a~~~~~ 217 (764)
.+..+...+++.+ -.++.+.|..-|++....+ |+-..- ....+ -..+.|++..|.+.|.
T Consensus 200 ----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 200 ----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred ----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 1234555555543 3578888888888877753 443322 11222 2235777888888888
Q ss_pred HHHcc----CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhH
Q 004279 218 DYIKH----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 218 ~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
+.+.. ..++...|.....+..+.|+.++|+.--+...+ +.+.- .
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~sy------------------------------i 321 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSY------------------------------I 321 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHH------------------------------H
Confidence 88763 556666777777778888888888777776665 22221 0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004279 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
..|.--..++...++|+.|.+-|+...+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12222334445567777887777776654
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.83 E-value=0.15 Score=49.42 Aligned_cols=101 Identities=9% Similarity=-0.005 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CChhhH
Q 004279 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG--KNEVTY 196 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~ 196 (764)
..|...+..+.+.|++++|...|+.+.+.+ |+. ..+-.+...|...|++++|...|+.+...-+. .....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 355555555566678888888888776653 332 35566777777788888888888877754211 112233
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCC
Q 004279 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLS 226 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 226 (764)
-.+...+...|+.+.|..+|+.+.+.+|.+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 333444556677777777777666554433
No 213
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.79 E-value=0.045 Score=40.52 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 004279 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMH 641 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 641 (764)
..|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444455555555555555555554331 123334444444555555 3555555555444
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.78 E-value=2.6 Score=42.73 Aligned_cols=148 Identities=14% Similarity=0.239 Sum_probs=110.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH-HHH
Q 004279 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY-TAL 585 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l 585 (764)
-+..|...|+...+....+.|..+|-+..+.| +.++...++++|..++ .|+...|..+|+.=... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 35578888998888888999999999999998 6788889999998776 47888899999765443 2444333 566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 004279 586 IKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 661 (764)
+.-+.+.++-+.|..+|+..... +..+ ..+|..+|.--..-|+...+..+-++|.+ +.|...+-....+-|.-
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 77778889999999999955431 1222 45899999888889999988888888875 55666555555554433
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.77 E-value=0.14 Score=49.48 Aligned_cols=99 Identities=11% Similarity=-0.040 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHccCCCC---HHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccccccc
Q 004279 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS---IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 271 (764)
.|...+....+.|++++|...|+.+.+..|.+ +.++..+..+|...|+++.|...|+.+.+. .|+.+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~------ 216 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKA------ 216 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcch------
Confidence 34444444444566666666666666654444 245556666666777777777777776652 2222111
Q ss_pred ccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004279 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
...+-.+...+...|+.+.|..+|++..+.
T Consensus 217 ---------------------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 217 ---------------------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 024444455566667777777777666654
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.71 E-value=0.089 Score=44.17 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=46.6
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004279 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
..|+..+..+++.+|+..|++..|.++.+...+.++++.+..+|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999888889999887543
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.55 E-value=0.042 Score=41.24 Aligned_cols=52 Identities=17% Similarity=0.015 Sum_probs=25.1
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004279 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
+.+.++++.|.++++.+.+.+ +.++..+......+.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344445555555555555443 2344444444445555555555555555444
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.55 E-value=0.94 Score=45.78 Aligned_cols=76 Identities=9% Similarity=-0.065 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccC---CCCcchHHHHHHHhhC---CCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004279 57 MQIVDALCRGERSRASHLLLNLGHAHH---SLGADDFFHILNYCAR---SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 130 (764)
.++.+|....+|+..+++++.+..... .-.+..-....-++.+ .|+.+.|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 445556666666666666666654311 0011111112222233 4666666666666444444555556655555
Q ss_pred HH
Q 004279 131 AL 132 (764)
Q Consensus 131 ~~ 132 (764)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.87 Score=43.80 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=16.7
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.|.|...|-.|..+|...|+.+.|...|....+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444445555555555555555555555555444
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.41 E-value=0.097 Score=45.92 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 004279 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445555666666666666666666432 33555666666666666666666666665542 366666554
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.88 Score=43.76 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=81.4
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---ccChhHHHHHHHHHHccCCCCHHhHH
Q 004279 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW---QKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
+-|...|-.|...|.+.|+...|...|....+.. .++...+..+-.++.. ..+-.++.++++++.+..+.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4467789999999999999999999999988752 2344444444444433 33456889999999999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHh
Q 004279 232 KFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~m~~~ 256 (764)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 9999999999999999999999983
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.31 E-value=0.13 Score=48.11 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=71.9
Q ss_pred CCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh----------------hHHH
Q 004279 506 PLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF----------------KSAS 564 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----------------~~a~ 564 (764)
..|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|+.||+.+-+..-. .-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45666777777777654 45566667788899999999999999999987665432 2378
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004279 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 595 (764)
.++++|..+|+.||..+-..|+.++++.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999888753
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.28 E-value=3.5 Score=41.85 Aligned_cols=170 Identities=9% Similarity=-0.085 Sum_probs=94.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcC--CCCChhhhHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAK---LHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
+.-.++-+|-...+++..+++.+.+..-.. +.-+..+--...-++.+ .|+.++|+.++..+....-.++..||..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 333555578889999999999998853211 11111122233445566 7999999999999766666778888887
Q ss_pred HHHHHHh---------ccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHH----HHHHH---H-HHHHhhhccc
Q 004279 199 LLKLAVW---------QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS----AYETL---Q-HMVALAMMGK 261 (764)
Q Consensus 199 ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~---~-~m~~~~~~~~ 261 (764)
+...|.. ...+++|...|.+.-.- .||...--.+...+.-.|.... ..++- . .+.+.|....
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI-EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 7776542 11245666655544432 2444433333333333332211 11221 1 1111111111
Q ss_pred chhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004279 262 LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
. ..-|.+.+++.+..-.|++++|.+..++|...
T Consensus 302 ~----------------------------~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 M----------------------------QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred c----------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 01266677777777777777777777777754
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.05 E-value=0.085 Score=39.54 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
..|.+.++++.|.++++.+.+-.|.++..+.....++.+.|+++.|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456666777777777777766666777777777777788888888888888776
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.04 E-value=0.41 Score=49.06 Aligned_cols=63 Identities=16% Similarity=-0.001 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004279 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|+..|+...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445556666666666666666666655433 2332 2355566666666666666666666555
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.84 E-value=1.9 Score=35.70 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=79.1
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004279 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||-+|--....-+-+-..+.++.+..-+.+.|- .-...++..|++.|.
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK------ 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc------
Confidence 467777777777776642 3333443433333334445556666666433222110 012233444443332
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhc
Q 004279 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 259 (764)
+..-....+.....+|.-++-.+++..+.+...+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556777788888899999999988888899999999999999999999999999999988765
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=1.6 Score=40.50 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=30.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhcCChhHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG---LQPSSHTYDGFIRAIVSDRGLRNGMEV 350 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~~ 350 (764)
.|-..|-.+.-..++..|...++.--+.+ -.-|..+...|+.+| ..|+.+++..+
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 34455666666677777777777644322 122344555566555 34555554444
No 228
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.70 E-value=3.8 Score=40.58 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 004279 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI--IR----CFKSASALVSMMVRDGF---YPQTMTYTALIKILLDYGD- 594 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~p~~~~~~~li~~~~~~g~- 594 (764)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++... .++-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999999888887764443333 22 34579999999998632 3455666666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH-
Q 004279 595 ---FDEALNLLDLVSLEGIPHDVL--LYNTILKKACEKGR--IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN- 666 (764)
Q Consensus 595 ---~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~- 666 (764)
.+.+..+|+.+...|+..+.. ....++..+..... ..++.++++.+.+.|+++.... ...++.++-.++.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~-yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH-YPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc-ccHHHHHHhcCCchH
Confidence 466778888888888877433 33333333322222 4578999999999999888776 45566555544444
Q ss_pred HHHHHHHHH
Q 004279 667 SAMEALQVL 675 (764)
Q Consensus 667 ~a~~~~~~~ 675 (764)
+..+.+.++
T Consensus 235 ~~~~~i~ev 243 (297)
T PF13170_consen 235 KIVEEIKEV 243 (297)
T ss_pred HHHHHHHHH
Confidence 444444433
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.67 E-value=3.8 Score=38.67 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=84.5
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhccCCCCc---chHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHH
Q 004279 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA---DDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALC 133 (764)
Q Consensus 58 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~ 133 (764)
.+..-.+.|+|++|.+.|+.+.... +.++ .+...++.++-+.++++.|+...++..+... .||. .|-.-|.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHH
Confidence 3445666777777777777776543 2222 3344455555577777777777777776532 2332 3333333333
Q ss_pred cc-------CCHH---HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhh-H-HHHHH
Q 004279 134 KG-------GYLE---EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVT-Y-TELLK 201 (764)
Q Consensus 134 ~~-------g~~~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~-~~ll~ 201 (764)
.- .+.. .|..-|+.+.++. ||. .-...|..-...+.. ... + ..+.+
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~d------~LA~~Em~Iar 175 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLND------ALAGHEMAIAR 175 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHHH------HHHHHHHHHHH
Confidence 21 1222 2222333333221 221 111111111111110 000 0 23445
Q ss_pred HHHhccChhHHHHHHHHHHccCCCCHH---hHHHHHHHhhccCCHHHHHHHHHHHH
Q 004279 202 LAVWQKNLSAVHEIWEDYIKHYSLSIF---SLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
.|.+.|.+..|..-++.+++..+.... .+-.+..+|...|-.++|.+.-.-+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 566777777777777777765433333 34445556777777777766544443
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.67 E-value=1.4 Score=47.07 Aligned_cols=92 Identities=14% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChh------hHHHHHHHHHh----ccChhHHHHHHHHHHccCCCCHHhH
Q 004279 162 NSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEV------TYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~------t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
..++....-.||-+.+++.+.+..+.+ +. .+. +|..++..+.. ..+.+.+.+++..+.+.+|.+....
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 344455555566666666666544421 11 111 23333332222 2344555666666655555555554
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHH
Q 004279 231 RKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
-.-.+.+...|+++.|++.|+...
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhc
Confidence 455555555666666666666543
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.52 E-value=0.22 Score=37.91 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=50.3
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHHhhh-cccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc
Q 004279 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 306 (764)
.+++.+..+|...|++++|+..|++..+..- .++. ......+++.+...+...
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~a~~~~~lg~~~~~~ 59 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------------------------HPDTANTLNNLGECYYRL 59 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHHHHc
Confidence 4677888889999999999999999886411 1111 111136899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004279 307 QNSGLAEQLMLQMQS 321 (764)
Q Consensus 307 g~~~~a~~~~~~m~~ 321 (764)
|++++|++.+++..+
T Consensus 60 g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 60 GDYEEALEYYQKALD 74 (78)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988653
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.51 E-value=4.4 Score=38.29 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC
Q 004279 90 FFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 157 (764)
|+..+.- .+.|+++.|.+.|+.+..+.. +-...+.-.++.++-+.++++.|+..+++.....+-.||
T Consensus 38 Y~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 38 YNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 4443333 244566666666666655421 112233334444555566666666666655555544444
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.42 E-value=6 Score=39.51 Aligned_cols=313 Identities=10% Similarity=0.022 Sum_probs=191.0
Q ss_pred CCcchHHHHHHHhhhccCCCCcchHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH--HccCCHHHH
Q 004279 66 GERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL--CKGGYLEEA 141 (764)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A 141 (764)
..+-.+.+.|+.-+... -|.+|-..+. ..||-..|++.-.+..+. +..|....-.|+.+- .-.|+++.|
T Consensus 67 ~sP~t~~Ryfr~rKRdr------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 67 ESPYTARRYFRERKRDR------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred hCcHHHHHHHHHHHhhh------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 34555666666654321 3555544444 457888887776655432 334554444555433 356999999
Q ss_pred HHHHHHHhhhcCCCCChh--hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004279 142 SNLIYFLGERYGIYPILP--VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
.+-|+.|... |..- -...|.-.--+.|+.+.|...-+..-..-.. =...+...+...+..|+++.|+++.+.-
T Consensus 140 r~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 140 RKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999741 3322 2233333445679999998888877665322 3457788899999999999999999988
Q ss_pred Hcc--CCCCHHh--HHHHHHHhh---ccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhh
Q 004279 220 IKH--YSLSIFS--LRKFVWSFT---RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 220 ~~~--~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
... +.++..- -..|+.+-. -.-+...|...-.+..+ +.|+...
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvP---------------------------- 264 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVP---------------------------- 264 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccch----------------------------
Confidence 753 5555442 223333221 12355666666555555 6666411
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCch-hHHHHHH
Q 004279 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN-NLKPQD-STIATLS 370 (764)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-~~~~~li 370 (764)
.--.-.+.+.+.|+..++-.+++.+-+....|+.. ..|.....-+.++.-++...+. .++||. ...-.+.
T Consensus 265 --aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va 336 (531)
T COG3898 265 --AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVA 336 (531)
T ss_pred --HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 22234577899999999999999999876555543 2233333333444444444331 234443 3445677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHH-hcCCCHHHHHHHHHHHhh-ccCCC
Q 004279 371 VECSKALELDLAEALLDQISRCT-NPKPFSAFLAAC-DTMDKPERAIKIFAKMRQ-KLRPD 428 (764)
Q Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~-~~~g~~~~a~~l~~~m~~-~~~p~ 428 (764)
.+-...|++..|..--+...... ....|-.|.+.- ...|+-.++...+.+-.+ .-.|+
T Consensus 337 ~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 337 EAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 77888899988877666655442 333444444443 445899999998888776 44443
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.14 E-value=2.5 Score=45.17 Aligned_cols=164 Identities=17% Similarity=0.119 Sum_probs=112.7
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcC-cccc-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCCh
Q 004279 89 DFFHILNYCARSPDPLFVMETWRMMEEKE-IGLN-----NKCYLLMMQALCK----GGYLEEASNLIYFLGERYGIYPIL 158 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 158 (764)
.+..++...+-.||-+.+++.+....+.+ +... .-.|...+..++. ..+.+.|.++++.+.++ .|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 35566777777789899998888876643 2211 1234444444443 45788999999999766 4776
Q ss_pred hhhHHHH-HHHhccCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHH
Q 004279 159 PVYNSFL-GACAKLHSMVHANLCLDLMDSRM---VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 159 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
..|...- +.+...|++++|++.|+...... .+.....+-.+.-.+....++++|.+.|..+.+....+...|.-+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 6665443 34566799999999999765321 1122334444555678899999999999999987666766666665
Q ss_pred HH-hhccCCH-------HHHHHHHHHHHH
Q 004279 235 WS-FTRLRDL-------KSAYETLQHMVA 255 (764)
Q Consensus 235 ~~-~~~~g~~-------~~A~~~~~~m~~ 255 (764)
.+ +...|+. ++|.++|.+++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 54 4466777 888899988875
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.08 E-value=0.048 Score=41.58 Aligned_cols=73 Identities=8% Similarity=-0.032 Sum_probs=48.5
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhh
Q 004279 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGH 80 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~ 80 (764)
|.....+..+...|...|++++|+ ..+++.. .. ....+-........+..+...+...|++++|++.+++..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~-~~~~~al--~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEAL-DYYEKAL--DI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHH--HH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHH--HH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566778899999999999999999 6666552 11 1222222222355566667777778888888888877543
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=2.4 Score=40.78 Aligned_cols=121 Identities=9% Similarity=-0.082 Sum_probs=53.8
Q ss_pred HHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004279 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
.....|+..+|..+|....... +-+...-..+..++...|+++.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666655543 222334445555566666666666666655433211111111122233333333332
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 004279 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 141 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
...+-.+... + +-|...--.+...+...|+.+.|++.+-.+.
T Consensus 222 ~~~l~~~~aa-d--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA-D--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222222211 1 1133444445555555666666655544443
No 237
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.85 E-value=3.6 Score=37.42 Aligned_cols=159 Identities=13% Similarity=0.029 Sum_probs=94.8
Q ss_pred cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004279 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++--.|+++-|.+-|...-+.++-.|=...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4568888888888899999999999998876332333333333 344568899888877777665544444444443332
Q ss_pred HHhccCCHHHHHHHHHH-HHhcCCCCChhhHHHHH-HHHHhccChhHHHHHHHHHHccCCC-------CHHhHHHHHHHh
Q 004279 167 ACAKLHSMVHANLCLDL-MDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIKHYSL-------SIFSLRKFVWSF 237 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~li~~~ 237 (764)
+.-++.+|..-+.+ ... .|..-|...| ..|. |.+ ..+.+++.+...... =..+|--|..-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL--gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL--GKI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH--hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 23455666544433 222 2333333322 2222 111 112333344332221 234778888899
Q ss_pred hccCCHHHHHHHHHHHHHh
Q 004279 238 TRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 238 ~~~g~~~~A~~~~~~m~~~ 256 (764)
...|+.++|..+|+.....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 9999999999999988763
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.84 E-value=0.63 Score=39.56 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCC---cchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH
Q 004279 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLG---ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC 124 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (764)
|+.+...+-.......+.|++++|++.|+.+...- +.+ ......++.++.+.++++.|...+++.++.+-.....-
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 44445555555777888899999999999988764 222 23466777888888999999999999888753222234
Q ss_pred HHHHHHHHHc
Q 004279 125 YLLMMQALCK 134 (764)
Q Consensus 125 ~~~li~~~~~ 134 (764)
|-..+.+++.
T Consensus 85 Ya~Y~~gL~~ 94 (142)
T PF13512_consen 85 YAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHHH
Confidence 5455555543
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=4 Score=39.77 Aligned_cols=150 Identities=10% Similarity=0.005 Sum_probs=84.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 004279 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT----ALIKILLDYGDFDE 597 (764)
Q Consensus 522 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~----~li~~~~~~g~~~~ 597 (764)
.|+..+|-..++++.+. .+.|...+...=++|.-.|+.+.-...++++... ..||...|. .+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46666777777776664 4556666666666777777777766667666643 123332222 22233456777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 004279 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
|++.-++..+.+ +-|.-.-.++...+--.|+.+++.++..+-.+. +--.-...|....-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777765432 234444455555566667777776664433221 1111122333444455666777777777764
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=93.76 E-value=0.44 Score=41.49 Aligned_cols=92 Identities=9% Similarity=-0.029 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004279 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
.....+-..|++++|..+|+-+.-.+ +.++.-+..|..+|-..++++.|++.|......+. -|+..+-.....|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 33455556677777777777666544 12222223333334445667777777766555442 34444445555666667
Q ss_pred CHHHHHHHHHHHhh
Q 004279 137 YLEEASNLIYFLGE 150 (764)
Q Consensus 137 ~~~~A~~~~~~~~~ 150 (764)
+.+.|+..|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777666643
No 241
>PRK15331 chaperone protein SicA; Provisional
Probab=93.69 E-value=1.7 Score=38.04 Aligned_cols=86 Identities=10% Similarity=-0.010 Sum_probs=44.9
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhH
Q 004279 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
+-..|++++|..+|..+.--+.. |..-|..|..++-..+++++|+..|...-..+. -|...+-.+-.++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 34566677776666666433322 222345555555556666666666665544332 133333344445555555555
Q ss_pred HHHHHHHHH
Q 004279 212 VHEIWEDYI 220 (764)
Q Consensus 212 a~~~~~~~~ 220 (764)
|...|....
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555555444
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.63 E-value=0.56 Score=44.16 Aligned_cols=89 Identities=9% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHcc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------HHHHH
Q 004279 541 PPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD----------------FDEAL 599 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~----------------~~~A~ 599 (764)
+-|..+|...+..+... +.++-....++.|.+.|+.-|..+|+.|+..+=+..- -+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45667777777766533 5667777778899999999999999999988755321 23467
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004279 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 600 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
+++++|...|+.||..+-..|++++.+.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 788888888888888888888888876654
No 243
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.58 E-value=8.4 Score=38.17 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--ccC----hhHHHHHHHHHHcc----CCCCHHhHHHHHHHhhccCC-
Q 004279 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVW--QKN----LSAVHEIWEDYIKH----YSLSIFSLRKFVWSFTRLRD- 242 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~----~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~- 242 (764)
+++.+.+++.|.+.|+.-+..+|-+..-.... ..+ ...+..+|+.|.+. -.++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777777666553332222 222 34677788888764 34556666666554 2222
Q ss_pred ---HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc-CC--HHHHHHHH
Q 004279 243 ---LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT-QN--SGLAEQLM 316 (764)
Q Consensus 243 ---~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~--~~~a~~~~ 316 (764)
.+.+..+|+.+.+.|+...... -+.+-+-++... .. ..++.+++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~L------------------------------Q~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDL------------------------------QFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHH------------------------------HHHHHHHHhccccchHHHHHHHHHH
Confidence 3556677777777666655421 111222222221 11 34677888
Q ss_pred HHHHHCCCCCCcccHHHHH
Q 004279 317 LQMQSLGLQPSSHTYDGFI 335 (764)
Q Consensus 317 ~~m~~~g~~p~~~t~~~li 335 (764)
+.+.+.|+++....|..+.
T Consensus 206 ~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHcCCccccccccHHH
Confidence 8888888877777765543
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.56 E-value=4.1 Score=35.19 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=23.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004279 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
..++..+...+.......+++.+...+ ..+....|.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 345555555556666666666554432 23444556666666544
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.54 E-value=2 Score=36.55 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=33.6
Q ss_pred CCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004279 99 RSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 169 (764)
+.|+++.|.+.|+.+..+-- +-...+.-.|+.+|.+.|++++|...+++..+.++..|+ +-|-..+.+++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 44555555555555555420 112233344555555555555555555555544443343 23444444443
No 246
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.46 E-value=2.3 Score=43.86 Aligned_cols=27 Identities=4% Similarity=-0.299 Sum_probs=12.1
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004279 160 VYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
.++.+..+|.+.|++++|+..|+...+
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe 103 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE 103 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444444444444444443
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.34 E-value=2.2 Score=35.18 Aligned_cols=97 Identities=8% Similarity=-0.074 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH---HHHHHH
Q 004279 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK---CYLLMM 129 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li 129 (764)
..+.....+++..|+++.|++.|.+....- +-.++.||.-.+++.-.|+.+.|++=+++..+...+.+.. .|..-.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 334444567888999999999999987654 5667889999999999999999999999988864333333 333445
Q ss_pred HHHHccCCHHHHHHHHHHHhh
Q 004279 130 QALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~ 150 (764)
..|-..|+-+.|..-|+...+
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHH
Confidence 567788999999998887754
No 248
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.34 E-value=10 Score=39.45 Aligned_cols=175 Identities=9% Similarity=0.022 Sum_probs=123.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004279 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 134 (764)
+..++..+..+..+.-+..+...|..-| -+...|..++++|..+ ..+.-..+|+++.+..+. |+..-..|..-|-
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE- 143 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE- 143 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH-
Confidence 3345556667777788888888888766 6677899999999988 456778999999988652 3333334454444
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCC------hhhhHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcc
Q 004279 135 GGYLEEASNLIYFLGERYGIYPI------LPVYNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~ 207 (764)
.++-..+..+|..+..+. -|. ...|.-|+..- ..+.+..+.+...+... |...-.+.+.-+-.-|....
T Consensus 144 kik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 144 KIKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HhchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 488888888888875432 221 12455554321 35677777777777643 55566677777878889999
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004279 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
++.+|.+++..+.++...|..+.-.++.-+-
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 9999999999999988888888777776543
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.18 E-value=5.1 Score=34.58 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 004279 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557 (764)
Q Consensus 513 ~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 557 (764)
..+|..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 344445555555555555555555554 23444555555555543
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.05 E-value=4.9 Score=42.36 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
..+.++.-+.+.|..+.|+++-..-. .-.....+.|+++.|.++.++ .++...|..|-...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 35555655666666666655533211 112233445666666555322 22455666666666
Q ss_pred HhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
...|+++-|++.|.+.. .+..|+-.|.-.|+.+.-.++.+...+
T Consensus 358 L~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665542 344555566666666655555554443
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.64 Score=46.50 Aligned_cols=95 Identities=12% Similarity=-0.070 Sum_probs=51.7
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004279 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (764)
.++.+.-++.+.+++..|++..++.++.+ ++|+-..-.-..+|...|+++.|+..|+.+.+.. +.|..+-+-|+..-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 34455555666666666666666666664 4555555556666666666666666666665432 22333334444433
Q ss_pred hccCCH-HHHHHHHHHHHh
Q 004279 169 AKLHSM-VHANLCLDLMDS 186 (764)
Q Consensus 169 ~~~g~~-~~A~~~~~~m~~ 186 (764)
-+.... +...++|..|-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 333333 233555666544
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=18 Score=40.22 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=43.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004279 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE----FIIEQMHQNKVQPDPSTCHFVFSGYV 660 (764)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~----~~~~~m~~~~~~p~~~~~~~ll~~~~ 660 (764)
++..+....+.+++..+.+..- +-++..|..++..+++.+..+.-. ++++........|-.. ++..++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~----VL~~La 782 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG----KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLH----VLQILA 782 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC----ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHH----HHHHHh
Confidence 4555666677777777776653 337788888888888888655443 4444444434444333 455555
Q ss_pred hcCC
Q 004279 661 NCGF 664 (764)
Q Consensus 661 ~~g~ 664 (764)
+.+.
T Consensus 783 kn~~ 786 (933)
T KOG2114|consen 783 KNGT 786 (933)
T ss_pred cCCc
Confidence 5543
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.85 E-value=23 Score=41.13 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHHHHHhc----CCCCchhhchhh
Q 004279 377 LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFG----NVNAPYEEGNMF 452 (764)
Q Consensus 377 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~----~~~~~~~~~~~~ 452 (764)
++++.|+.-+.++ +...|.-.+.---+.|-+.+|+.++ +|+...+.-+..+|+ ....+++|.-++
T Consensus 894 ~ry~~AL~hLs~~----~~~~~~e~~n~I~kh~Ly~~aL~ly-------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSEC----GETYFPECKNYIKKHGLYDEALALY-------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHc----CccccHHHHHHHHhcccchhhhhee-------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4556665555554 3334555566666677777777764 577777666655443 222333333222
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhh--HHHHHHHHHHcCChhHHHH
Q 004279 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT--YNTVLHSLVEAQESHRAME 530 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~ 530 (764)
+..+..++ -+.+|..+|++.+|+.+-.++....+... --.|+.-+...+++-+|-+
T Consensus 963 e~~Gklek----------------------Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 963 ERCGKLEK----------------------ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HHhccHHH----------------------HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 22222221 23345555555555555554433333322 2445555666666666666
Q ss_pred HHHHHHh
Q 004279 531 IFKQMKT 537 (764)
Q Consensus 531 l~~~m~~ 537 (764)
+..+...
T Consensus 1021 il~e~~s 1027 (1265)
T KOG1920|consen 1021 ILLEYLS 1027 (1265)
T ss_pred HHHHHhc
Confidence 6555443
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.76 E-value=5.2 Score=39.48 Aligned_cols=133 Identities=12% Similarity=0.005 Sum_probs=72.3
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004279 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
...++..++...+.++.+++.|+...+..-..+++.-.. ..+-.|-..|.+..+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl--------------------------qvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL--------------------------QVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee--------------------------ehhhhHHHHHHHHHh
Confidence 344466677777788888888888776433332211100 366677777888888
Q ss_pred HHHHHHHHHHHHH----CCCCCCcc-cHHH-----HHHHHHhcCChhHHHHHHHHHHHCCC-CCchhHH----HHHHHHH
Q 004279 309 SGLAEQLMLQMQS----LGLQPSSH-TYDG-----FIRAIVSDRGLRNGMEVLKIMQQNNL-KPQDSTI----ATLSVEC 373 (764)
Q Consensus 309 ~~~a~~~~~~m~~----~g~~p~~~-t~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~----~~li~~~ 373 (764)
+++|.-+.....+ .++. |.. -|.. +--++...|.+..|.+.-++..+..+ .-|..++ ..+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 8877766555432 1211 211 1222 22345566777777777666554321 1133333 2455556
Q ss_pred HhcCCHHHHHHHHHH
Q 004279 374 SKALELDLAEALLDQ 388 (764)
Q Consensus 374 ~~~g~~~~A~~~~~~ 388 (764)
-..|+.+.|+.-+++
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 666666665555444
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.71 E-value=1.9 Score=41.05 Aligned_cols=107 Identities=15% Similarity=0.037 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC---CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC-hhhH
Q 004279 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYG---IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN-EVTY 196 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~ 196 (764)
...|+.-+. +.+.|++.+|...|....++++ ..|| .+-.|..++...|++++|..+|..+.+.-++ |. +.++
T Consensus 142 ~~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 347777665 4466778888888887765432 2222 4556788888888888888888887765211 11 1344
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHH
Q 004279 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
--|.......|+-+.|..+|+++.+.+|-...+-.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 44555566788888888888888887666655433
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.60 E-value=2.3 Score=44.80 Aligned_cols=156 Identities=17% Similarity=0.020 Sum_probs=99.7
Q ss_pred HHHccCCHHHHHHHHH--HHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccC
Q 004279 131 ALCKGGYLEEASNLIY--FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
...-.|+++++.++.. ++.. .++ ..-.+.++.-+-+.|..+.|+.+-.+ .. .=.....+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 3445688888766664 2211 122 33588899999999999999997443 22 22344567888
Q ss_pred hhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccc
Q 004279 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
++.|.++... ..+...|..|.....+.|+++-|.+.|.+..
T Consensus 334 L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------------------------- 374 (443)
T PF04053_consen 334 LDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------------------------------- 374 (443)
T ss_dssp HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------------------------
T ss_pred HHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------------------------------
Confidence 8888877654 3467789999999999999999988888764
Q ss_pred hhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004279 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 353 (764)
-|..|+-.|.-.|+.+...++.+.....| -++..+.++.-.|+.++..+++..
T Consensus 375 ------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 ------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46677777888888877777776666554 256666666677777777666543
No 257
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.50 E-value=7.2 Score=34.52 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=78.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 004279 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR--IDVIEFIIEQMH 641 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~ 641 (764)
.++++.+.+.+++|+...|..+++.+.+.|++..-..++. .++-+|.......+-.+..... ...|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455566667888888888888888888887666555544 3556666555544433322211 233344444332
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhccHHHHHHHHHHhhhcchh
Q 004279 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNEN 719 (764)
Q Consensus 642 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 719 (764)
..+..++..+...|++-+|+++.+.... . ........+....+.+|+..-..+++.+.....+
T Consensus 90 --------~~~~~iievLL~~g~vl~ALr~ar~~~~--~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 90 --------TAYEEIIEVLLSKGQVLEALRYARQYHK--V-----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred --------hhHHHHHHHHHhCCCHHHHHHHHHHcCC--c-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 1344567788888888888888875421 1 1111233444444555666566666666554433
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=2.4 Score=40.81 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=93.2
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHH
Q 004279 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY 96 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 96 (764)
+...|+..+|. ..+...+...|+. ......++..|...|+.+.|..++..+..............-+..
T Consensus 144 ~~~~e~~~~a~----------~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 144 LIEAEDFGEAA----------PLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred hhhccchhhHH----------HHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 45566666666 4444556666664 555666788999999999999999998765322222222233444
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004279 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
+.+..+..+..++-+...+. +-|...-..+...+...|+.+.|.+.+-.+..++.-.-|-..-..|+..+.-.|.
T Consensus 213 l~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 55555555555555555443 3477777888999999999999998877666554434444555666666655553
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.08 E-value=1.8 Score=41.08 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=41.8
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHH
Q 004279 89 DFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNSFL 165 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li 165 (764)
.|+.-+..+ +.|++..|.+.|...++..- ......+--|..++...|++++|..+|..+.+..+-.|-. ..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444433 23445555555555544320 1112223334445555555555555555544333222221 2333334
Q ss_pred HHHhccCCHHHHHHHHHHHHhc
Q 004279 166 GACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
....+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4444455555555555555443
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.85 E-value=6.7 Score=32.69 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhhhc
Q 004279 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 681 (764)
...+.....+|+-+.-.+++..+.. +-.+++....-+..+|.+-|+..++.+++.+--++|++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344445555555555555555543 23445555555555666666666665555555555543
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.84 E-value=8.7 Score=34.01 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=43.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
.+..++..+...|++-+|+.+.+.... .+......++.+..+.+|...-..+|+-..+++
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 667788889999999999888877532 244455667888888888777777776666654
No 262
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=7.6 Score=39.22 Aligned_cols=94 Identities=7% Similarity=-0.057 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 004279 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 373 (764)
.+++.+.-++.+.+.+..|+..-+..+..+ ++|....--=-.++...|+++.|+..|+.+++..+. |..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 488889999999999999999999888765 456667667778888999999999999999886543 333344454444
Q ss_pred HhcCCHHHH-HHHHHHH
Q 004279 374 SKALELDLA-EALLDQI 389 (764)
Q Consensus 374 ~~~g~~~~A-~~~~~~~ 389 (764)
.+....... .++|..|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 433333222 3444444
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.37 E-value=4.7 Score=33.40 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=46.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH---HHHHhcCC
Q 004279 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF---SGYVNCGF 664 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~g~ 664 (764)
++...|+++.|++.|.+.... .+.....||.=..++.-.|+.++|+.-+++.++..-.-......+.+ ..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666665532 12345566666666666666666666666666532111222222222 24455566
Q ss_pred hHHHHHHHHHH
Q 004279 665 HNSAMEALQVL 675 (764)
Q Consensus 665 ~~~a~~~~~~~ 675 (764)
-+.|..=|+.-
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 66666555543
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.79 E-value=26 Score=38.60 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHH-HhccCCHHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhcc--
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMDS-------RMVGKNEVTYTELLKLAVWQK-- 207 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 207 (764)
...|.++++...+...+.+-...-.....+ +....|.+.|+..|+.+.. .| ......-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 457888888776543222222222333334 5577899999999988876 44 3334555666666533
Q ss_pred ---ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc-cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccC
Q 004279 208 ---NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 208 ---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
+.+.|..++....+...|+....-..+..... ..+...|.++|....+.|..+-.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~--------------------- 363 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAI--------------------- 363 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHH---------------------
Confidence 56678888888887777776665555444444 35678899999998876654321
Q ss_pred CcccchhhhHhhHHHHHHHH--HccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004279 284 NALPVMKVLRWSFSDVIHAC--GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
-+-+++... ....+...|..++.+..+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|.+
T Consensus 364 -----------~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 364 -----------YRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred -----------HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 222222222 23457788999999988887 3332222333444444 7777777777777776654
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=14 Score=34.50 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004279 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..|.....+|-...++++|...+.+..+. ..-|...|.+ ...++.|.-+.++|... .--..-|.-....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~--yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 34555566777777777777766655421 1222222221 22344455555555442 1111233444455
Q ss_pred HHhccChhHHHHHHHHH
Q 004279 203 AVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~ 219 (764)
|...|..+.|-..+++.
T Consensus 101 Y~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHhCCcchHHHHHHHH
Confidence 66666666555555544
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.17 E-value=20 Score=35.32 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=96.1
Q ss_pred HhcCCcchHHHHHHHhhhccCCCCcch--------HHHHHHHhhCCCChhHHHHHHHHHHHc----C----cccc-----
Q 004279 63 LCRGERSRASHLLLNLGHAHHSLGADD--------FFHILNYCARSPDPLFVMETWRMMEEK----E----IGLN----- 121 (764)
Q Consensus 63 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----~~~~----- 121 (764)
.+.|+.+.|..++.+........++.. |+.-...+.+..+++.|...+++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467889999999988865432233322 454455554433787777666665443 1 1222
Q ss_pred HHHHHHHHHHHHccCCHH---HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004279 122 NKCYLLMMQALCKGGYLE---EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
..++..++.+|...+..+ +|.++++.+....|-+| .++-.=+..+.+.++.+++.+++.+|...- .-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 245667788888777654 56667776754443333 355555666777899999999999999862 213344555
Q ss_pred HHHHHHh--ccChhHHHHHHHHHHc-cCCCCH
Q 004279 199 LLKLAVW--QKNLSAVHEIWEDYIK-HYSLSI 227 (764)
Q Consensus 199 ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~ 227 (764)
++..+.. ......+...+..+.. ...|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 5554422 2334455565655553 344443
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.00 E-value=12 Score=37.00 Aligned_cols=130 Identities=7% Similarity=-0.008 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCchh
Q 004279 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPS---SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN-----LKPQDS 364 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~ 364 (764)
.+|-.+.+++-+.-++.+++.+-..-... |..|. .....++-.+....+.++.+++.|+...+.- ......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 35555556655555555555554443321 22221 1223345566777777888888887766532 222344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCcch---------HHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 365 TIATLSVECSKALELDLAEALLDQISRCT---NPKPF---------SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~---------~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
++..|-..|.+..|.++|.-+.....+.. ...-| -.|..++-..|+.-.|.+..++..+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 67778888888888887766554443211 11111 2334455666666666666665544
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.84 E-value=4 Score=39.53 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 004279 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPSTCH 653 (764)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 653 (764)
..++..++..+...|+.+.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456777888888888888888888887543 34777888888888888888888888887765 57777776654
Q ss_pred HHHHH
Q 004279 654 FVFSG 658 (764)
Q Consensus 654 ~ll~~ 658 (764)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
No 269
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.79 E-value=38 Score=37.92 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=21.5
Q ss_pred CccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004279 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 319 (764)
+..+..+|..++..-.|..-.-..+..+..++|.+++++-
T Consensus 288 ~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~ 327 (608)
T PF10345_consen 288 PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKA 327 (608)
T ss_pred eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Confidence 3445566666665444444344445556555666665554
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.45 E-value=1.5 Score=28.73 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004279 582 YTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
+..+...|.+.|++++|.++|+++.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555555555443
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.25 E-value=1 Score=29.54 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=13.4
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004279 161 YNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+..+...|.+.|++++|+++|+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555443
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.15 E-value=20 Score=33.72 Aligned_cols=224 Identities=13% Similarity=-0.104 Sum_probs=154.7
Q ss_pred cCCcchHHHHHHHhhhccCC-CCcchHHHHHHHhhCCCChhHHHHHHHHHHHc-CccccHHHHHHHHHHHHccCCHHHHH
Q 004279 65 RGERSRASHLLLNLGHAHHS-LGADDFFHILNYCARSPDPLFVMETWRMMEEK-EIGLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
.+....+...+......... .....+......+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554421 12456677777777888888888888887763 23455667777778888888999999
Q ss_pred HHHHHHhhhcCCCCChhhhHHHHH-HHhccCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004279 143 NLIYFLGERYGIYPILPVYNSFLG-ACAKLHSMVHANLCLDLMDSRMV--GKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
..+......... +......... .+...|+++.|...+........ ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPD--PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 999887643211 1122333333 68889999999999999855321 123333444444466788999999999999
Q ss_pred HccCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHH
Q 004279 220 IKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 220 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.+..+. ....+..+...+...++.+.|...+..... ..|.. ...+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~------------------------------~~~~~~ 241 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDN------------------------------AEALYN 241 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCccc------------------------------HHHHhh
Confidence 988777 688899999999999999999999999887 33321 023444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 004279 299 VIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 299 li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
+...+...+..+.+...+.+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444667788888888888765
No 273
>PRK11906 transcriptional regulator; Provisional
Probab=88.99 E-value=18 Score=37.55 Aligned_cols=128 Identities=9% Similarity=-0.077 Sum_probs=73.0
Q ss_pred HHHHHHHhcc-----CCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHH-h---------ccChhHHHHHHHHHHccCCC
Q 004279 162 NSFLGACAKL-----HSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAV-W---------QKNLSAVHEIWEDYIKHYSL 225 (764)
Q Consensus 162 ~~li~~~~~~-----g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~-~---------~~~~~~a~~~~~~~~~~~~~ 225 (764)
...+.+.... -+.+.|+.+|.+.... .+.|+-..-..++..|. . ..+..+|.++-+..++..+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5555554431 2456788888887722 34555433222222221 1 22234555556666666677
Q ss_pred CHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHc
Q 004279 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305 (764)
Q Consensus 226 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 305 (764)
|+.+...+..+..-.++++.|..+|++... +.|+.. .+|........-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A------------------------------~~~~~~~~~~~~ 384 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIA------------------------------SLYYYRALVHFH 384 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccH------------------------------HHHHHHHHHHHH
Confidence 777777777766666777777777777766 555541 244444444455
Q ss_pred cCCHHHHHHHHHHHHH
Q 004279 306 TQNSGLAEQLMLQMQS 321 (764)
Q Consensus 306 ~g~~~~a~~~~~~m~~ 321 (764)
+|+.++|.+.+++-.+
T Consensus 385 ~G~~~~a~~~i~~alr 400 (458)
T PRK11906 385 NEKIEEARICIDKSLQ 400 (458)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 6777777777777544
No 274
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.80 E-value=4.1 Score=39.30 Aligned_cols=104 Identities=8% Similarity=0.032 Sum_probs=58.6
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC--CCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh
Q 004279 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV 194 (764)
Q Consensus 117 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (764)
|.+....+...++..-....+++.++..+-.+..... ..|+. +-.+.++.+. .-++++++.++..=.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4344444555555555555666777666665543210 11111 1122233222 335567777776666777777777
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHcc
Q 004279 195 TYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
+++.+|..+.+.+++..|.++...++..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777766666543
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.62 E-value=24 Score=36.90 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCcchHHHHHHHhcCCCHHHHHHHHHHHhh-cc-CCCHHhHHHHH
Q 004279 364 STIATLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KL-RPDIRTYELLF 436 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~-~p~~~t~~~ll 436 (764)
.+-..|..++-+.|+.++|.+.|.++.+.. .......|+.++...+.+.++..++.+-.+ .. +.-...|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333456667777888888888888886532 223556788888888888888888887654 22 22334555544
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=12 Score=36.56 Aligned_cols=119 Identities=8% Similarity=-0.100 Sum_probs=89.7
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH--HH--HHHhcc
Q 004279 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL--LK--LAVWQK 207 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~--~~~~~~ 207 (764)
+-..|+..+|-..++++.+. .+.|...++-.=.+|.-.|+.+.....++.+... -.||...|+.+ +- ++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34568888888888888754 4567777888888888899999888888887654 23444333322 22 334678
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004279 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
-+++|++.-++..+-.+.|..+-.++.+++--.|++.++.++..+-
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 8999999998888888888888889999999999999998876553
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.26 E-value=3.8 Score=39.66 Aligned_cols=76 Identities=12% Similarity=-0.067 Sum_probs=48.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCChhhHHH
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVTYTE 198 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 198 (764)
++..++..+...|+++.+...++++.+.+ +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45556666677777777777777776544 33556777777777777777777777766654 366666555444
Q ss_pred HHH
Q 004279 199 LLK 201 (764)
Q Consensus 199 ll~ 201 (764)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 278
>PRK11906 transcriptional regulator; Provisional
Probab=88.14 E-value=31 Score=36.02 Aligned_cols=137 Identities=9% Similarity=-0.032 Sum_probs=92.4
Q ss_pred HHH--HHHHHHHHcc-----CCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHh---------ccCCHHHHHHHHHHHH
Q 004279 123 KCY--LLMMQALCKG-----GYLEEASNLIYFLGERYGIYPILP-VYNSFLGACA---------KLHSMVHANLCLDLMD 185 (764)
Q Consensus 123 ~~~--~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~---------~~g~~~~A~~~~~~m~ 185 (764)
..| ...+.+.... -..+.|..+|.+...+..+.|+-. .|..+..++. ...+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 4555554431 235678888888874444555533 3333322221 1344567777777777
Q ss_pred hcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 186 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+.+.. |......+-.+....++++.+...|++...-.|....+|........-+|+.+.|.+.+++..+ +.|..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~ 405 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRR 405 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchh
Confidence 76533 6777666666667778899999999999888888888888888888889999999999999776 55543
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.13 E-value=6.8 Score=35.41 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHhhHHH
Q 004279 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP---DPSTCHF 654 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ 654 (764)
..+..+.+.|++.|+.++|.+.|.++.+....|.. ..+-.+|+.+.-.+++..+...+.+....--.+ +...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45677888888889999999888888765544443 356677888888888888888777766432221 1111111
Q ss_pred HHH--HHHhcCChHHHHHHHH
Q 004279 655 VFS--GYVNCGFHNSAMEALQ 673 (764)
Q Consensus 655 ll~--~~~~~g~~~~a~~~~~ 673 (764)
... .+...|++.+|-+.|-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 122 3344566776666554
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.46 E-value=20 Score=31.67 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHHcCccccHH-HHHHHHHHHHccCCHHHHHHHHHHH
Q 004279 101 PDPLFVMETWRMMEEKEIGLNNK-CYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
+..++|+..|..+.+.|...-+. ..-......+..|+-..|...|+++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 33444444444444444322111 1122233334444555555555544
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.41 E-value=7.2 Score=37.76 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 004279 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
+.++++.++..=...|+.||..+++.+++.+.+.|.+.+|..+.-.|..+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 444555555554555555555555555555555555555555555444443
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.38 E-value=1.2 Score=27.60 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.2
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++..|..+|.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366777888888888888888888654
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.86 E-value=0.046 Score=47.80 Aligned_cols=83 Identities=19% Similarity=0.045 Sum_probs=38.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..+.+.+.++.+...++.+...+...+....+.++..|++.+..+...++++. .+.+-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchH
Confidence 333444555555555555555444334444555555555555444444444441 1112223444455555555
Q ss_pred HHHHHHHHHH
Q 004279 139 EEASNLIYFL 148 (764)
Q Consensus 139 ~~A~~~~~~~ 148 (764)
++|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555443
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.50 E-value=74 Score=37.32 Aligned_cols=152 Identities=12% Similarity=0.155 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChhHHHHH
Q 004279 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS----IIRCFKSASAL 566 (764)
Q Consensus 491 g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~ 566 (764)
++++.|+.-+..++ ...|.-.++.--++|.+.+|+.++ +|+...+.-+..+|+ ....+++|.-+
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45666666665553 234455555556677777777775 577776666655554 45677777766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004279 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL--LYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
|+..-+ ..--+.+|..+|++.+|+.+..++.. ..|.. +-..|+.-+...++.-+|-++..+...
T Consensus 962 Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-- 1027 (1265)
T KOG1920|consen 962 YERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-- 1027 (1265)
T ss_pred HHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--
Confidence 665432 12346778888888888888887641 12222 225677778888888888887777653
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 004279 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 645 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
.|. -.+..|+++-.|++|..+...
T Consensus 1028 -d~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1028 -DPE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -CHH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 222 235677888888888776653
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.50 E-value=0.71 Score=28.21 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=25.9
Q ss_pred HHHHHccCCCCHHhHHHHHHHhhccCCHHHHH
Q 004279 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
|++.++..|.++.+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555667888889999999999999998885
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.20 E-value=1.9 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 004279 617 YNTILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~ 639 (764)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 287
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.09 E-value=39 Score=35.44 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004279 580 MTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
.+-..|..++-+.|+.++|.+.+++|.+. ...-+..+...|+..+...+.+.++..++.+--+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33345666777889999999999999753 2122344777899999999999999999988754
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.60 E-value=6.1 Score=30.80 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=20.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004279 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 602 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
++.+....+-|++.+..+.+++|.+-+|+..|.++++-.+
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333334445555555555555555555555555555444
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.49 E-value=0.99 Score=27.58 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=14.6
Q ss_pred cccHHHHHHHHHHHHccCCHHHHH
Q 004279 119 GLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
|-|...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345556666666666666666654
No 290
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.91 E-value=51 Score=36.89 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---
Q 004279 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLD--- 591 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~--- 591 (764)
...+.-.|.+|.|.+.+-+ ..+...+.+.+.+.+..|.-.+-.+... ..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455667899999988877 2334566777766666554332222211 2222211 11222567788888876
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004279 592 YGDFDEALNLLDLVSLE 608 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~ 608 (764)
..+..+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35788888888776643
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.90 E-value=34 Score=31.96 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=13.4
Q ss_pred HHccCCHHHHHHHHHHHHHCC
Q 004279 303 CGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 303 ~~~~g~~~~a~~~~~~m~~~g 323 (764)
-+..+++.+|+++|++.....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777766543
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.67 E-value=8.6 Score=34.78 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=39.5
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004279 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
.+..+...|++.|+.+.|.+.|.++.+....+... ...+-.+|+.....++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----------------------------id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----------------------------IDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----------------------------HHHHHHHHHHHHHhCC
Confidence 45566667777777777777777776643333221 1355566777777777
Q ss_pred HHHHHHHHHHHHH
Q 004279 309 SGLAEQLMLQMQS 321 (764)
Q Consensus 309 ~~~a~~~~~~m~~ 321 (764)
+..+...+.+...
T Consensus 89 ~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 89 WSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666665543
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.64 E-value=27 Score=30.62 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=7.4
Q ss_pred HccCCHHHHHHHHHHH
Q 004279 133 CKGGYLEEASNLIYFL 148 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~ 148 (764)
...|+|.+|+++|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3444444444444444
No 294
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.36 E-value=6.2 Score=31.12 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004279 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
+.++-++.+...+.-|++.+..+.+.+|-+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555443
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.34 E-value=29 Score=30.70 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-HHHHH--H
Q 004279 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM-TYTAL--I 586 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~l--i 586 (764)
.|...+. +++.+..++|+.-|.++.+.|..--++. -..+-......|+...|...|+++-.....|-+. -...| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 3566778888888888888765432221 1122233556788888888888887765444433 11111 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh
Q 004279 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
..+...|.+++...-.+-+...+-+.....-..|--+-.+.|++..|.++|+.+......|...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 2345677787777777766544433344455566666778888888888888877644445433
No 296
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.23 E-value=36 Score=31.80 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=43.8
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHH-H
Q 004279 159 PVYNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW-S 236 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~-~ 236 (764)
..+......+...+++..+...+...... ........+......+...+++..+...+.......+.+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444555555555555555555554431 112233333334444444444555555555444432222222222222 4
Q ss_pred hhccCCHHHHHHHHHHHH
Q 004279 237 FTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~m~ 254 (764)
+...|+++.|...+.+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 140 LYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 556666666666666653
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.58 E-value=8.4 Score=30.08 Aligned_cols=49 Identities=8% Similarity=-0.065 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004279 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
|.-++.+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555566666666777777777777777777777777777776654
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.69 E-value=8.1 Score=30.51 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004279 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
+..+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555666666666666666666666666666666554
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.67 E-value=16 Score=33.39 Aligned_cols=80 Identities=13% Similarity=-0.041 Sum_probs=56.2
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc--CCCCChhhhHHHHHHHhccCCH
Q 004279 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 174 (764)
+.+.|| ..|++.|-.+...+.--++....+|...|. ..+.++++.++....+.. +-.+|...+.+|+..|-+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445565 457777777777765556666666666665 567888888887765432 2246777888899999888888
Q ss_pred HHHH
Q 004279 175 VHAN 178 (764)
Q Consensus 175 ~~A~ 178 (764)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 300
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.37 E-value=34 Score=33.27 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=75.6
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHH-cCccccHHHHHHHHHHHHc-cC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004279 90 FFHILNYCARSPDPLFVMETWRMMEE-KEIGLNNKCYLLMMQALCK-GG-YLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
|..++. ++.-.-+|+.+|+.... ..+--|..+-..+++.... .+ ....--++.+-+....+-.++..+-..+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666664 33345556666663222 2344566666666666655 22 222222333333333344566667777778
Q ss_pred HHhccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004279 167 ACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
.++..+++.+-.++++..... ++.-|...|...|+.....||..-...+.+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888888888877777766554 5666777788888888888887766666543
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.34 E-value=35 Score=36.56 Aligned_cols=99 Identities=16% Similarity=0.036 Sum_probs=45.9
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHH
Q 004279 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...+. |..|+-.+...|+-+...
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 4455555555544331 234555555555555555555555554433 233444444444444333
Q ss_pred HHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004279 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
.+-....+....+.. ..+|...|+++++.+++..-
T Consensus 713 ~la~~~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 333333332222221 12344556666665555443
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.08 E-value=98 Score=34.53 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=14.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhh
Q 004279 401 FLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 401 li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
|..-|...+++..|++++-..++
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHccChHHHHHHHHhccC
Confidence 55666666677777666655543
No 303
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.06 E-value=82 Score=34.76 Aligned_cols=153 Identities=12% Similarity=0.030 Sum_probs=73.6
Q ss_pred HHcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004279 520 VEAQESHRAMEIFKQMKT-------CGIPPNAATYNIMIDCCSIIR-----CFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 520 ~~~~~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
....+.+.|+.+|+.+.+ .| +......+-.+|.+.. +.+.|..++....+.|. |+...+-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 344567777777776655 44 2223444444454432 45567777777776663 33333222222
Q ss_pred HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004279 588 ILLD-YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA--CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664 (764)
Q Consensus 588 ~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 664 (764)
.... ..+...|.++|......|.. +...+..+.-.. ....+.+.|..++++.-+.| .|...--...+..+.. ++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 2111 13456777777777666632 222222221111 12335667777777777666 2221111112223333 56
Q ss_pred hHHHHHHHHHHHHhh
Q 004279 665 HNSAMEALQVLSMRM 679 (764)
Q Consensus 665 ~~~a~~~~~~~~~~~ 679 (764)
++.+.-.+..+...+
T Consensus 413 ~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 413 YDTALALYLYLAELG 427 (552)
T ss_pred ccHHHHHHHHHHHhh
Confidence 665555555444433
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.86 E-value=4.5 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=21.9
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 228 FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777888888888888888888887
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.98 E-value=26 Score=31.98 Aligned_cols=79 Identities=14% Similarity=0.006 Sum_probs=48.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCCh
Q 004279 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCGFH 665 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~ 665 (764)
..+.|+ ++|.+.|-.+...+.--++...-.|..-| ...|.++++.++.+.++. +-.+|+..+.+|.+.|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 56666666666555444444444444434 355777777777776652 3356677777777777777777
Q ss_pred HHHH
Q 004279 666 NSAM 669 (764)
Q Consensus 666 ~~a~ 669 (764)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7663
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.19 E-value=30 Score=36.98 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHH
Q 004279 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 180 (764)
.|+++.|..++..+.+ ..-+.++..+-+.|-.++|+++
T Consensus 599 rrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~ 636 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALEL 636 (794)
T ss_pred hccccccccccccCch--------hhhhhHHhHhhhccchHhhhhc
Confidence 4556666555444421 1344555556666666666654
No 307
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.03 E-value=13 Score=34.12 Aligned_cols=52 Identities=12% Similarity=-0.006 Sum_probs=23.1
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004279 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 254 (764)
+.+.+.+.+++.....-++..|.|......++..+|-.|++++|..-++...
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3334444444444444444344444444444444555555555544444443
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.78 E-value=6.3 Score=23.59 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=20.3
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
.+..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667778888888888888888876
No 309
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.69 E-value=48 Score=33.71 Aligned_cols=169 Identities=9% Similarity=-0.018 Sum_probs=91.0
Q ss_pred chhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhcc---
Q 004279 6 LRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH--- 82 (764)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~--- 82 (764)
.|..+.-+.+=|...|+++.|+|.+.+ + |.|=+..+. ....+...|......|+|......-.+..+..
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR-~---RdYCTs~kh----vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~ 220 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSR-A---RDYCTSAKH----VINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN 220 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhh-h---hhhhcchHH----HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence 455667778889999999999966555 4 666666443 56677777888888999999888887776541
Q ss_pred ------CCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc--C----ccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004279 83 ------HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK--E----IGL-NNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 83 ------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 149 (764)
+++....+..+...+. +++..|...|-..... + +.| |..+|. .+.+++--++-+--+.+.....
T Consensus 221 ~~~~q~v~~kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~ 297 (466)
T KOG0686|consen 221 ENLAQEVPAKLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNES 297 (466)
T ss_pred hhHHHhcCcchHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchh
Confidence 2223333444444333 3555554443322211 1 222 344443 3334444333332222221110
Q ss_pred hhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004279 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 150 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
-+.-.......+..|.+-| .+++...++++++++..
T Consensus 298 Fk~flel~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 298 FKLFLELEPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hhhHHhcChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 0000111222444444433 35778888888877654
No 310
>PF13934 ELYS: Nuclear pore complex assembly
Probab=76.45 E-value=31 Score=32.69 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=16.5
Q ss_pred CcccchhhHHHHHHHHhhcccchhhh
Q 004279 2 YRPLLRTRFQLIADSFCKSKFHKHER 27 (764)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~a~ 27 (764)
|=|.+...|+.+++.++..+--..+.
T Consensus 21 YPP~s~~~L~~Ll~~i~~~~~~~~~K 46 (226)
T PF13934_consen 21 YPPKSDNDLRALLDLILSSNVSLLKK 46 (226)
T ss_pred CCccCHHHHHHHHHHHhcCCcCHHHh
Confidence 34566667777777777765544444
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.44 E-value=53 Score=28.85 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=46.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhc
Q 004279 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF-IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 298 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 376 (764)
.++..-.+.++.+.+..++..|.-. .|.......+ ...+...|+|.+|..+|+++.... |......+|+..|...
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 3344456678888888888888764 5555444332 223567888888888888876654 2333344555444443
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.44 E-value=8.1 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004279 582 YTALIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~ 606 (764)
|..+..+|...|++++|++.|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444433
No 313
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.41 E-value=1.6e+02 Score=33.98 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHH------HHHHHhcCCcchHHHHHHHhhhc
Q 004279 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQ------IVDALCRGERSRASHLLLNLGHA 81 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~------i~~~~~~~~~~~A~~~~~~~~~~ 81 (764)
++.-+..|+.+.++++|. .+.+.. ..-.|+ ....... +..+-.++++++|+.+|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai-~L~e~~---------~~~~p~--~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAI-SLAEIL---------DSPNPK--EKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHH-HHHhcc---------CCCChH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 777788899999999998 554422 111222 2221111 12244689999999999998754
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.29 E-value=1.5e+02 Score=33.34 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=23.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004279 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
+|--|.|+|++++|.++....... .......+...+..+...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 445566777777777776444432 344445566666666554
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.12 E-value=7.5 Score=24.62 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004279 581 TYTALIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (764)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
No 316
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.31 E-value=63 Score=34.12 Aligned_cols=7 Identities=0% Similarity=-0.344 Sum_probs=3.1
Q ss_pred HccCCHH
Q 004279 304 GRTQNSG 310 (764)
Q Consensus 304 ~~~g~~~ 310 (764)
+..|+.+
T Consensus 143 ~~~~~~~ 149 (413)
T PHA02875 143 VMMGDIK 149 (413)
T ss_pred HHcCCHH
Confidence 3444443
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.30 E-value=27 Score=36.05 Aligned_cols=121 Identities=8% Similarity=-0.043 Sum_probs=59.4
Q ss_pred hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCC
Q 004279 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
..||+-.|-+-+....+..+.++.........+...|+++.+...+....+.--..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~----------------------- 357 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD----------------------- 357 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-----------------------
Confidence 345555555444444444343443333334445556666666665555443111111
Q ss_pred cccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004279 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
.+-..+++...+.|+++.|..+-..|....++ |...........-..|-++++...|+++...+
T Consensus 358 ---------~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 358 ---------STLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ---------hHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 25556666666666666666666666654433 22222222222234455566666666655443
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=72.65 E-value=81 Score=29.20 Aligned_cols=165 Identities=10% Similarity=-0.064 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH--hccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 004279 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC--AKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
-+.+||.|.--+...|+++.|.+.|+...+-+ |. .-|..+=++. --.|++.-|.+-|...-+.... |+ |.+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-DP--fR~ 170 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-DP--FRS 170 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC---Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCC-Ch--HHH
Confidence 35678888888889999999999999887643 32 2343333332 2358999998887777665322 22 222
Q ss_pred HHHHHH--hccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccc
Q 004279 199 LLKLAV--WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 199 ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
+ -.|. ..-+..+|..-+.+-.++...+-.-|+. +..|...=.. ..+|+.+.+-. ..+.
T Consensus 171 L-WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~i-V~~yLgkiS~---e~l~~~~~a~a-~~n~-------------- 230 (297)
T COG4785 171 L-WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNI-VEFYLGKISE---ETLMERLKADA-TDNT-------------- 230 (297)
T ss_pred H-HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHH-HHHHHhhccH---HHHHHHHHhhc-cchH--------------
Confidence 2 1222 2334445544333222222222222222 2222211111 22333333311 1110
Q ss_pred cCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004279 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 322 (764)
.-..+.+.+|--|.+.+...|+.++|..+|+-.+..
T Consensus 231 ----------~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 231 ----------SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ----------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 001111357778888888888888888888877654
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.62 E-value=2.5 Score=36.67 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=64.6
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004279 91 FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 170 (764)
..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|-+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--------~~yd~~~~~~~c~~ 82 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--------NNYDLDKALRLCEK 82 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--------SSS-CTHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--------cccCHHHHHHHHHh
Confidence 3467777778888889999999998776667888999999999998888888877622 22344567777778
Q ss_pred cCCHHHHHHHHHHHHh
Q 004279 171 LHSMVHANLCLDLMDS 186 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~ 186 (764)
.|-+++|.-++..+..
T Consensus 83 ~~l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLGN 98 (143)
T ss_dssp TTSHHHHHHHHHCCTT
T ss_pred cchHHHHHHHHHHccc
Confidence 8888888887766443
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.57 E-value=10 Score=23.99 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004279 615 LLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 615 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666553
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.51 E-value=57 Score=29.23 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004279 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 360 (764)
+++|.+.|++.... .|+...|+.-+.... +|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 45555666655553 788889988887663 467778777776544
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.23 E-value=1e+02 Score=30.07 Aligned_cols=148 Identities=11% Similarity=-0.010 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh-------hh------------------cCCCCChh
Q 004279 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG-------ER------------------YGIYPILP 159 (764)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~------------------~~~~~~~~ 159 (764)
.|+++|..+..... -+.+-..++.++....+..+|...|.... .+ .+...|+.
T Consensus 151 KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~ 228 (361)
T COG3947 151 KALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQ 228 (361)
T ss_pred HHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHH
Confidence 68999998887632 23344566777777777777776665331 10 12344555
Q ss_pred hhHHHHHHHhc-cCCHHHHHHHHHHHHhcCCCCCh-----------------hhHHHHHHHHHhccChhHHHHHHHHHHc
Q 004279 160 VYNSFLGACAK-LHSMVHANLCLDLMDSRMVGKNE-----------------VTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 160 ~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~-----------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
-|-+.+...-. +-.++++.++....+.. .-|+. .++....+.|...|.+.+|.++.+....
T Consensus 229 e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 229 EYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Confidence 56666654432 34566777766665432 22222 1334455678899999999999999999
Q ss_pred cCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
-.+.+...+-.|+..+...||--.|.+-++.+.+
T Consensus 308 ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 308 LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9999999999999999999998888888888764
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.41 E-value=11 Score=22.38 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=7.1
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 004279 622 KKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 622 ~~~~~~g~~~~a~~~~~~m 640 (764)
..+...|++++|++.+++.
T Consensus 9 ~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 3333344444444444333
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.95 E-value=52 Score=31.75 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=42.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 004279 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE---- 626 (764)
Q Consensus 551 l~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 626 (764)
|.+++..+++.+++...-+.-+..-+..+.+...-|-.|.+.|.+..+.++-.......-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4556666666665554433322211122223333444566666666666666666543222233345555544443
Q ss_pred -cCCHHHHHHHH
Q 004279 627 -KGRIDVIEFII 637 (764)
Q Consensus 627 -~g~~~~a~~~~ 637 (764)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666654
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.40 E-value=1.3e+02 Score=30.70 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=13.1
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
++..+...+-+.|.++.|...+..+.+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 444444445555555555555444443
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.84 E-value=7.1 Score=21.94 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=10.1
Q ss_pred HHHHHHHccCCHHHHHHHHH
Q 004279 127 LMMQALCKGGYLEEASNLIY 146 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~ 146 (764)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.03 E-value=18 Score=32.68 Aligned_cols=91 Identities=12% Similarity=-0.108 Sum_probs=56.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcc-----hHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGAD-----DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
...+-.+|++++|..-|...+..- ++.+. .|..-..+..+.+.++.|+.-..+.++.+ +........-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 444567778888887777776653 22221 13334445566777777777777777765 223333344455777
Q ss_pred ccCCHHHHHHHHHHHhhh
Q 004279 134 KGGYLEEASNLIYFLGER 151 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~ 151 (764)
+...+++|+.-+..+.+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 777788888777777654
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.02 E-value=34 Score=31.57 Aligned_cols=56 Identities=13% Similarity=-0.097 Sum_probs=26.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHH
Q 004279 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
..++.+.+.+.+.+|+...+.-.+.. +.|...-..++..||-.|++++|..-++..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444555555555555544332211 223334445555555555555555544443
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.22 E-value=13 Score=22.29 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=21.0
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+|..+...|...|+.+.|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667778888888888888888776
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.85 E-value=63 Score=25.65 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=26.9
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004279 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 553 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
.+.+.|++++|..+.+.+ ..||...|-+|-. .+.|.-+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344556666666655544 3566666554432 34555555555555555444
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.84 E-value=1.7e+02 Score=30.76 Aligned_cols=145 Identities=13% Similarity=0.028 Sum_probs=70.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcch--HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH--HHHHHHHHHHc
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADD--FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK--CYLLMMQALCK 134 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~ 134 (764)
+...+..|+.+-+..+++ .|..++... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 444556777655555544 444343322 234455555667764 445555666555432 11233555667
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhccChhHH
Q 004279 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY--TELLKLAVWQKNLSAV 212 (764)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a 212 (764)
.|+.+.+..+++.-..... ..+. ...+.+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+-+
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~-~~~~-~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADD-VFYK-DGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CCCHHHHHHHHHcCCcccc-cccC-CCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 7888887776653211000 0011 1223344445567664 34444455665543321 1233444556666655
Q ss_pred HHHHH
Q 004279 213 HEIWE 217 (764)
Q Consensus 213 ~~~~~ 217 (764)
..+++
T Consensus 152 ~~Ll~ 156 (413)
T PHA02875 152 ELLID 156 (413)
T ss_pred HHHHh
Confidence 55444
No 332
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=66.80 E-value=2.4e+02 Score=32.32 Aligned_cols=88 Identities=9% Similarity=-0.069 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHHcCccccH-------HHHHHHHHH-HHccCCHHHHHHHHHHHhhhc---CCCCChhhhHHHHHHH
Q 004279 100 SPDPLFVMETWRMMEEKEIGLNN-------KCYLLMMQA-LCKGGYLEEASNLIYFLGERY---GIYPILPVYNSFLGAC 168 (764)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~li~~~ 168 (764)
...+.+|..+..++...-..|+. ..++.|-.. ....|++++|.++-+...+.. -..+....+..+..+.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 35566666666665543212111 123333222 234567777776665554321 1233444555666666
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 004279 169 AKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~ 187 (764)
.-.|++++|..+..+..+.
T Consensus 508 ~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 508 HIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHhchHHHHHHHHHHHHHH
Confidence 6677777777776665543
No 333
>PRK09687 putative lyase; Provisional
Probab=66.62 E-value=1.4e+02 Score=29.50 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=48.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004279 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR-CFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 592 (764)
..+.++.+.++ +++...+-.+.+ .+|...-...+.++.+.+ ..+.+...+..+.. .++..+-...+.++.+.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 33444444443 334444444443 233333333344444332 12234444433332 23444444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004279 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
|. .+|...+-+..+.+ + .....+.++...|+. +|...+..+.+
T Consensus 220 ~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 220 KD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55 33444444433221 1 123455555555553 45555555553
No 334
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.11 E-value=1.4e+02 Score=29.15 Aligned_cols=115 Identities=13% Similarity=0.192 Sum_probs=75.4
Q ss_pred ChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHc-cC-ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004279 524 ESHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSI-IR-CFKSASALVSMMVR-DGFYPQTMTYTALIKILLDYGDFDEAL 599 (764)
Q Consensus 524 ~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~ 599 (764)
...+|+.+|+...- ..+--|..+...+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34567777763222 2344566777777776655 22 23333344444443 245677777788888888889998888
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004279 600 NLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIE 638 (764)
Q Consensus 600 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 638 (764)
++++..... +...|...|..+|..-...|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888876653 455678888888888888888766655544
No 335
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.10 E-value=1.4e+02 Score=28.96 Aligned_cols=164 Identities=15% Similarity=0.042 Sum_probs=87.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhhH-------HHHHHHHHhccChhHHHHHHHHHHc---c--CCCCHHhHHH
Q 004279 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTY-------TELLKLAVWQKNLSAVHEIWEDYIK---H--YSLSIFSLRK 232 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~ 232 (764)
.+-..+.+++++|+..+.++...|+..|..+. ..+.+.|...|+.....+....... . -+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 33445566677777777777666666555433 3455566666666544443332221 1 2223344555
Q ss_pred HHHHhhc-cCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHH
Q 004279 233 FVWSFTR-LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 233 li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 311 (764)
|+..+.. ...++.-+++.....+...+.....-+ ...=.-++..+.+.|++.+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr--------------------------~~Le~Kli~l~y~~~~Ysd 143 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLR--------------------------LELECKLIYLLYKTGKYSD 143 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHhcccHHH
Confidence 5555433 234555555555554432222110000 0133457888999999999
Q ss_pred HHHHHHH----HHHCCCCCCcccHHHHH-HHHHhcCChhHHHHHHHHH
Q 004279 312 AEQLMLQ----MQSLGLQPSSHTYDGFI-RAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 312 a~~~~~~----m~~~g~~p~~~t~~~li-~~~~~~~~~~~a~~~~~~m 354 (764)
|+.+... +.+..-+|+..+...+= .+|-..+++.++..-+...
T Consensus 144 alalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 144 ALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 9876654 44555567766655443 3555556665555544443
No 336
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=64.85 E-value=1.3e+02 Score=28.39 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=54.7
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-----------CCChhhhHHHH
Q 004279 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI-----------YPILPVYNSFL 165 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~li 165 (764)
|.+..+..-..++.+-....++..+.....+++ +...|+...|+.-++.-....|. .|.......++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334444444445555555566666666665554 55678888888877765443332 33444444455
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 004279 166 GACAKLHSMVHANLCLDLMDSRMVGKNE 193 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (764)
..+. .+++++|.++|.++-+.|..|..
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 4433 45777777777777777766543
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.25 E-value=2e+02 Score=30.54 Aligned_cols=168 Identities=10% Similarity=0.088 Sum_probs=85.8
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhh
Q 004279 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
...-+++..+..+....-.+.+-.+|...| -+...|..+++.|... .-++-..+|+++++..-.|...-..|...|-
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344555556666666666666666665542 3455566666666555 4455556666665555555555555555554
Q ss_pred ccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHH
Q 004279 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 239 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 318 (764)
+ ++.+.+..+|.++..+-+. ... ...+...|.-++..- ..+.+..+.+...
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~-~~q-------------------------~~~i~evWeKL~~~i--~dD~D~fl~l~~k 194 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIP-RRQ-------------------------NAAIKEVWEKLPELI--GDDKDFFLRLQKK 194 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcc-hhh-------------------------hhhHHHHHHHHHHhc--cccHHHHHHHHHH
Confidence 4 5566666666665542111 100 000013444444321 2344444554444
Q ss_pred HHH-CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004279 319 MQS-LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 319 m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 358 (764)
+.. .|...-.+.+.-+..-|....++.+|.+++..+.+.+
T Consensus 195 iqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 195 IQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 433 2223333444555555666667777777776666554
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=62.92 E-value=8.9 Score=22.66 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhcc
Q 004279 57 MQIVDALCRGERSRASHLLLNLGHAH 82 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~ 82 (764)
.+...+.+.|++++|++.|+.+....
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34455666777777777777776653
No 339
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.73 E-value=4.5e+02 Score=34.10 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=57.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHH-HHHHHH
Q 004279 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA-TLSVEC 373 (764)
Q Consensus 296 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~ 373 (764)
...-|.-....|+++.|...|+++.+.+ |+ ..+++-+++.....+.++.+.-..+-.... ..+....++ .=+.+-
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaa 1528 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAA 1528 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHH
Confidence 3345555667788888888888888764 44 667777777777777776665543333222 222222222 222333
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcchHHH
Q 004279 374 SKALELDLAEALLDQISRCTNPKPFSAF 401 (764)
Q Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l 401 (764)
.+.++++..+.... .. +...|.+.
T Consensus 1529 W~l~qwD~~e~~l~---~~-n~e~w~~~ 1552 (2382)
T KOG0890|consen 1529 WRLSQWDLLESYLS---DR-NIEYWSVE 1552 (2382)
T ss_pred hhhcchhhhhhhhh---cc-cccchhHH
Confidence 56666666666555 22 55566554
No 340
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.53 E-value=1.7e+02 Score=28.74 Aligned_cols=208 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCChhhhHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHH
Q 004279 154 IYPILPVYNSFLGACAKL-HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 154 ~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
+.|.+..++-||+-|--. ..++.-.+-|-...+. +.++...=-+++.+..-.+ |.+|..+.-..
T Consensus 107 i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~-F~e~Er~KLA~~Tal~l~n--------------Gt~~~tvl~~L 171 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKL-FEENERKKLAMLTALLLSN--------------GTLPATVLQSL 171 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhC--------------CCCCHHHHHHH
Q ss_pred HHHHhhccC-CHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHH
Q 004279 233 FVWSFTRLR-DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 233 li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 311 (764)
+-..+.+.| -..-|.++|+.... .-..+.++..+-+.+.-+.
T Consensus 172 ~~d~LVkeGi~l~F~~~lFk~~~~-------------------------------------Ek~i~~lis~Lrkg~md~r 214 (412)
T KOG2297|consen 172 LNDNLVKEGIALSFAVKLFKEWLV-------------------------------------EKDINDLISSLRKGKMDDR 214 (412)
T ss_pred HHhhHHHHhHHHHHHHHHHHHHHh-------------------------------------hccHHHHHHHHHhcChHhH
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC--------------------------------hhHHHHHHHHHHHCCC
Q 004279 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG--------------------------------LRNGMEVLKIMQQNNL 359 (764)
Q Consensus 312 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~--------------------------------~~~a~~~~~~m~~~~~ 359 (764)
-+++| +|+..+-...-..+...|- +++.....++-.+.+-
T Consensus 215 Lmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n 286 (412)
T KOG2297|consen 215 LMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN 286 (412)
T ss_pred HHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHh
Q 004279 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR 422 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 422 (764)
-|+..+...+-++......|.+-.++..+-.-+ ....|..|+.+++..|+.+-.+-+=-+|.
T Consensus 287 lPe~eVi~ivWs~iMsaveWnKkeelva~qalr-hlK~yaPLL~af~s~g~sEL~Ll~KvQe~ 348 (412)
T KOG2297|consen 287 LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-HLKQYAPLLAAFCSQGQSELELLLKVQEY 348 (412)
T ss_pred CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-HHHhhhHHHHHHhcCChHHHHHHHHHHHH
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.52 E-value=18 Score=23.65 Aligned_cols=21 Identities=10% Similarity=-0.239 Sum_probs=9.4
Q ss_pred HHHhhCCCChhHHHHHHHHHH
Q 004279 94 LNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~ 114 (764)
.++|...|+.+.|++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444444
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=60.80 E-value=25 Score=20.90 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004279 581 TYTALIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (764)
+|..+...|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555666666666666666554
No 343
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.07 E-value=1.3e+02 Score=27.07 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=19.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004279 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
.+..|.+.|.+++|.++|+.... .|+......-|.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~ 151 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLL 151 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHH
Confidence 33456666777777777766655 244444433333
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.84 E-value=78 Score=30.62 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=25.2
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHH
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEE 115 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 115 (764)
|.+++..++|.+++...-+.-+..-...+.....-|-.|.+.+.+..+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 445555555555554333222222123333444444444555555555544444443
No 345
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=59.82 E-value=2.1e+02 Score=29.23 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=46.2
Q ss_pred CChhhHHHHHHHHHhccChhHHHHHHHHHHccC----CCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004279 191 KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY----SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 257 (764)
....+|..+.+.+.+.|.++.|...+..+.+.. ...+...-.-....-..|+..+|+..++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345577778888888899988888888877632 1134455555666667777788877777776533
No 346
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.67 E-value=2.2e+02 Score=29.57 Aligned_cols=332 Identities=8% Similarity=-0.013 Sum_probs=0.0
Q ss_pred hhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHc
Q 004279 37 SRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK 116 (764)
Q Consensus 37 ~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 116 (764)
.+.|...-...-+......+..+..|...|+-.+|.+..+.+ ..+..+...+-++..-.+.-..|..+.-.+.+.
T Consensus 199 e~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke 273 (645)
T KOG0403|consen 199 ELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKE 273 (645)
T ss_pred HhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchh
Q ss_pred CccccHHHHHHHHHHHHccCC--------HHHHHHHHHHHhhhcCCCCChh----------------------hhHHHHH
Q 004279 117 EIGLNNKCYLLMMQALCKGGY--------LEEASNLIYFLGERYGIYPILP----------------------VYNSFLG 166 (764)
Q Consensus 117 ~~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~----------------------~~~~li~ 166 (764)
+...+...-+.+..++.+.+. +..|...|+.+..+....-... ....+|+
T Consensus 274 ~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIq 353 (645)
T KOG0403|consen 274 GREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQ 353 (645)
T ss_pred hhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHH
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccC----C
Q 004279 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR----D 242 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~ 242 (764)
-|...|+..+..+.++++-.....|-..-+..-+..=.+...-+.|-.++..+--..-+....-+.+...+-... +
T Consensus 354 EYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD 433 (645)
T KOG0403|consen 354 EYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALD 433 (645)
T ss_pred HHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhcc
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHH-HHHHHHHHHHH
Q 004279 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG-LAEQLMLQMQS 321 (764)
Q Consensus 243 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~ 321 (764)
.-.|-+.+.....+.+..+. .-+.-+..+...=... .+.+.++....
T Consensus 434 ~p~a~~elalFlARAViDdV--------------------------------Lap~~leei~~~lp~~s~g~et~~~Ars 481 (645)
T KOG0403|consen 434 IPRASQELALFLARAVIDDV--------------------------------LAPTNLEEISGTLPPVSQGRETLDKARS 481 (645)
T ss_pred ccccHHHHHHHHHHHHhhcc--------------------------------cccCcHHHHcCCCCCchhhHHHHHHHHH
Q ss_pred C---------------------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHH
Q 004279 322 L---------------------GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 322 ~---------------------g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
. .+.--..-...|+.-|...|++.+|....+++----+. ...++.+++...-+.|+-.
T Consensus 482 Llsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t 560 (645)
T KOG0403|consen 482 LLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDST 560 (645)
T ss_pred HHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHH
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHhc
Q 004279 381 LAEALLDQISRCTNPKPFSAFLAACDT 407 (764)
Q Consensus 381 ~A~~~~~~~~~~~~~~~~~~li~~~~~ 407 (764)
..+.++++.-.. ..+|-|.|-.+|.+
T Consensus 561 ~~ldLLk~cf~s-glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 561 MILDLLKECFKS-GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHHhc-CceeHHHhhhhhhh
No 347
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=59.17 E-value=2.9e+02 Score=30.70 Aligned_cols=367 Identities=9% Similarity=-0.021 Sum_probs=0.0
Q ss_pred ccch-hhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcC-----------CcchH
Q 004279 4 PLLR-TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRG-----------ERSRA 71 (764)
Q Consensus 4 ~~~~-~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~-----------~~~~A 71 (764)
|..- +.+=..+..+.-.|++++|. .++... -++.+......+..++.-+...- ++..+
T Consensus 144 p~~~~p~FW~~v~~lvlrG~~~~a~-~lL~~~---------s~~~~~~~~~~~~~~~~LL~~~P~~~~~~~~s~~~f~~~ 213 (566)
T PF07575_consen 144 PYEHDPDFWDYVQRLVLRGLFDQAR-QLLRLH---------SSYQSYSLQSAFEALIQLLSSMPRYRPNSGQSESEFSSQ 213 (566)
T ss_dssp SCSGSHHHHHHHHHHHHTT-HHHHH-HHH-TT---------TTTTTHHHHHHHHHHHHHHTT------------SS-HHH
T ss_pred CCccchhHHHHHHHHHHcCCHHHHH-HHHHhc---------ccccchhHHHHHHHHHHHHHhCCCccccchhhhHHHHHH
Q ss_pred HHHHHHhhhc----cCCCCcchHHHHHHHhhCC--CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004279 72 SHLLLNLGHA----HHSLGADDFFHILNYCARS--PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 72 ~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
.+.|+..... ...-.......=++...+. |+.+...+..+.-.+. ....++-..-..+..+.-..++
T Consensus 214 ~~~W~~~~~~l~~~~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~-------~~a~~ly~~P~~~~~e~l~~~a 286 (566)
T PF07575_consen 214 WREWKSECRRLRSSSLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEA-------LVALLLYVDPTCKPFELLHEYA 286 (566)
T ss_dssp HHHHHHHHHHHHHHS---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHH-------HHHHHHHT------TTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHH-------HHHhheeeCCCcchhhhHHHHH
Q ss_pred HHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChh-------H----HHH
Q 004279 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-------A----VHE 214 (764)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-------~----a~~ 214 (764)
+...+..+..+....=..++..+ .|++..+++....+.. |..+-..+...+...|-++ . ..-
T Consensus 287 ~~~~~~~~~~~~~~~e~~~~~i~--~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~ 359 (566)
T PF07575_consen 287 QSCLEEFPPDSTNPLEQILLAIF--EGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREY 359 (566)
T ss_dssp HHHHHHS---TTSTTHHHHHHHH--TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHH--ccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccccccccccccccHHHH
Q ss_pred HHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHh
Q 004279 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
++-......-.+...|..-+..+..+++.. ....+.+..+-.-.+. .
T Consensus 360 ~ll~YA~~L~s~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~-------------------------------~ 406 (566)
T PF07575_consen 360 LLLEYASSLMSHHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTN-------------------------------D 406 (566)
T ss_dssp HHHHHHHHHHT-TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SH-------------------------------H
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCch-------------------------------H
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 374 (764)
.-.-++..|.+.|-.+.|.++.+.+-.. .....-|...+..+.+.|+...+..+-..+.+.....+......+++...
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~--~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~ 484 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQR--LLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIG 484 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhc
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCCHHhHHHHHHHh
Q 004279 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLF 439 (764)
Q Consensus 375 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~ 439 (764)
...-...-+..+....+ ..-..+.+++.+|.+.+-.+.. +..|..+-...+.++.
T Consensus 485 ~~~~~~~~L~fla~yre----------F~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 485 SPMLLSQRLSFLAKYRE----------FYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ------------------------------------------------------------------
T ss_pred chhhhhhhhHHHHHHHH----------HHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
No 348
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.95 E-value=66 Score=26.76 Aligned_cols=40 Identities=8% Similarity=0.022 Sum_probs=23.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004279 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+.+..-.+-|++.+...-+++|.+-+|+..|.++|+-.+.
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333445566666666666666666666666666666554
No 349
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=58.93 E-value=2.7e+02 Score=30.27 Aligned_cols=127 Identities=8% Similarity=0.038 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHH-
Q 004279 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR-AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV- 371 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~- 371 (764)
..|+++|.---.....+.+..+++.+... -|..+-|..-.. .=.+.|..+.+.++|++-... ++.....+..+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 47878887666666677788888888754 577665544333 334788999999999988763 4444455554443
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC-----CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 372 ECSKALELDLAEALLDQISRCT-----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.....|+.+...+.|+.....- ....|...|.--..++++.....++++..+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 3335688888888888877643 666788888888889999999999999887
No 350
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=58.56 E-value=32 Score=33.93 Aligned_cols=52 Identities=21% Similarity=-0.001 Sum_probs=29.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHH
Q 004279 129 MQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDL 183 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 183 (764)
.+.|.++|.+++|+..+..-... .| |.+++..-..+|.+..++..|+.--..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 34566667777777766654322 23 555666666666666666655544333
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.45 E-value=1.2e+02 Score=26.18 Aligned_cols=83 Identities=8% Similarity=0.044 Sum_probs=55.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcC----CCCChhhhHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCChhhHHH
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYG----IYPILPVYNSFLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
..+.++.-....++......+++.+..-.+ -..+...|+.++++.++... --.+..+|.-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456667666666777777666666522110 01233478888888876665 5567778888888778888888888
Q ss_pred HHHHHHhc
Q 004279 199 LLKLAVWQ 206 (764)
Q Consensus 199 ll~~~~~~ 206 (764)
+++++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88877654
No 352
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.37 E-value=3.1e+02 Score=30.75 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=42.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhHHHHHHhhhhc
Q 004279 624 ACEKGRIDVIEFIIEQMHQNKVQPDPS--TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAE 701 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (764)
+..-|+.++|..+.++|.... .|-.. -..++..+|+-.|+.....+++.- .+.............--+|+.-.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~----aVsD~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHV----AVSDVNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcc----cccccchHHHHHHHHHheeeEec
Confidence 344566678888888887532 22211 112334466767765554444432 12222222222222224555566
Q ss_pred cHHHHHHHHHHhhh
Q 004279 702 DSEAESRILQFCED 715 (764)
Q Consensus 702 ~~~~~~~~~~~~~~ 715 (764)
+++.....++.+.+
T Consensus 586 dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSE 599 (929)
T ss_pred ChhhchHHHHHHhh
Confidence 66665555555554
No 353
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.31 E-value=60 Score=29.55 Aligned_cols=106 Identities=16% Similarity=-0.071 Sum_probs=71.3
Q ss_pred CcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc-----HHHHHHHHHHHHccCCHHHH
Q 004279 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN-----NKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A 141 (764)
..+.++.-...+...| .-+..+|+++.|..-|...+..= ++. ...|..-..++.+.+.++.|
T Consensus 87 ek~k~~~kad~lK~EG------------N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~a 153 (271)
T KOG4234|consen 87 EKDKAIEKADSLKKEG------------NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESA 153 (271)
T ss_pred HHHHHHHHHHHHHHHH------------HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHH
Confidence 3444555555555544 22346899999999999888752 222 34566666788899999999
Q ss_pred HHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 004279 142 SNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
+.--....+- .|+ ....-.-..+|-+...+++|+.-|..+.+..
T Consensus 154 I~dcsKaiel---~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 154 IEDCSKAIEL---NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHhhHhc---CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 9887766553 232 1122223447888899999999999999864
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.18 E-value=20 Score=23.47 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=10.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHh
Q 004279 128 MMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~~~ 149 (764)
|..+|...|+.+.|.++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444555555555555555443
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=57.63 E-value=35 Score=33.65 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=20.5
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHH
Q 004279 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
|.++|.+++|..+|.......+.+++++..-..+|.+...+..|
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444455555444444
No 356
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.58 E-value=1.9e+02 Score=28.13 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhc----cCCCCcchHHHH
Q 004279 18 CKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA----HHSLGADDFFHI 93 (764)
Q Consensus 18 ~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l 93 (764)
++++++++|+ ..+..-...+.+.++...|-++-.-+.+. +.+.+......+
T Consensus 1 v~~kky~eAi-------------------------dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl 55 (260)
T PF04190_consen 1 VKQKKYDEAI-------------------------DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARL 55 (260)
T ss_dssp HHTT-HHHHH-------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHH
T ss_pred CccccHHHHH-------------------------HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHhhCCCChh-HHHHHHHHHHHcCcc------ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004279 94 LNYCARSPDPL-FVMETWRMMEEKEIG------LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 94 l~~~~~~~~~~-~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 166 (764)
+..+...+.-+ .-..+.+.+++-. . -++.....+...|.+.|++.+|+.-|- .+-.|+...+-.++.
T Consensus 56 ~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl-----~~~~~~~~~~~~ll~ 129 (260)
T PF04190_consen 56 IELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL-----LGTDPSAFAYVMLLE 129 (260)
T ss_dssp HHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH-----TS-HHHHHHHHHHHH
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH-----hcCChhHHHHHHHHH
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHcc----------------CCCCHHhH
Q 004279 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH----------------YSLSIFSL 230 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------~~~~~~~~ 230 (764)
-....|...++ |.+.-..++. |...+++..|...++...+. ......-|
T Consensus 130 ~~~~~~~~~e~--------------dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF 194 (260)
T PF04190_consen 130 EWSTKGYPSEA--------------DLFIARAVLQ-YLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNF 194 (260)
T ss_dssp HHHHHTSS--H--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHH
T ss_pred HHHHhcCCcch--------------hHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHH
Q ss_pred HHHHHHhhccCCHHHHHHHHHH
Q 004279 231 RKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~ 252 (764)
..++-.-+..++.+.-..+.++
T Consensus 195 ~~lLl~t~e~~~~~~F~~L~~~ 216 (260)
T PF04190_consen 195 LQLLLLTCERDNLPLFKKLCEK 216 (260)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=57.26 E-value=2.9e+02 Score=30.07 Aligned_cols=181 Identities=9% Similarity=0.015 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 004279 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLG--TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI--PPNAATYNIMI 551 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~--~p~~~t~~~ll 551 (764)
+...|...++--.+.|+.+.+.-.|+....+-. ...|--.+.-....|+.+-|-.++..-.+--+ .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345566677777788888888888877633322 22444444444445888877777766554332 23333333333
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH----
Q 004279 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMT-YTALIKILLDYGDFDEAL---NLLDLVSLEGIPHDVLLYNTILKK---- 623 (764)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~-~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~---- 623 (764)
+-..|+++.|..+++.+.+.- |+..- -..-+....+.|..+.+. +++...... +-+..+.+.+.--
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARL 449 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHH
Confidence 334689999999999998763 55332 223344566788888888 555444322 2222233333222
Q ss_pred -HHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 004279 624 -ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663 (764)
Q Consensus 624 -~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 663 (764)
+.-.++.+.|..++.++.+ -+.++...|..++......+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~-~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEAND-ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhh-cCCccHHHHHHHHHHHHhCC
Confidence 2345788999999999987 35566677777777555544
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.82 E-value=33 Score=25.77 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=28.3
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCc-cccHH-HHHHHHHHHHccCCHHHHHHH
Q 004279 93 ILNYCARSPDPLFVMETWRMMEEKEI-GLNNK-CYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~ 144 (764)
.++.| ...+...|+..|...++.-. +++.+ ++..++.+|+..|++.+++++
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 34455666666666665432 22222 455666777777776666554
No 359
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.51 E-value=3.4e+02 Score=30.67 Aligned_cols=209 Identities=10% Similarity=-0.087 Sum_probs=103.6
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCChh--hHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHH
Q 004279 171 LHSMVHANLCLDLMDSRM-VGKNEV--TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
..+.+.|..++....... ..+... .+..+.......+..+++...++...... .+.....--+......++++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHH
Confidence 356677888887764432 222211 22223222222222455555555433222 23333444455556888999888
Q ss_pred HHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----
Q 004279 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----- 322 (764)
Q Consensus 248 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 322 (764)
..+..|....-. .. .-.--+.+++...|+.++|...|+.....
T Consensus 333 ~~i~~L~~~~~~-~~-------------------------------rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG 380 (644)
T PRK11619 333 TWLARLPMEAKE-KD-------------------------------EWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYP 380 (644)
T ss_pred HHHHhcCHhhcc-CH-------------------------------hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHH
Confidence 888887652211 11 13335677777789999999999887431
Q ss_pred -------CCCCCc------cc--------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHH
Q 004279 323 -------GLQPSS------HT--------YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381 (764)
Q Consensus 323 -------g~~p~~------~t--------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (764)
|..++. .. -..-+..+...|....|...+..+... . +......+.....+.|..+.
T Consensus 381 ~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~A~~~g~~~~ 457 (644)
T PRK11619 381 MVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-R--SKTEQAQLARYAFNQQWWDL 457 (644)
T ss_pred HHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCHHH
Confidence 211000 00 001122334455666666666655553 2 33334444444555566665
Q ss_pred HHHHHHHHhhCC-----CCcchHHHHHHHhcCCCHHHHH
Q 004279 382 AEALLDQISRCT-----NPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 382 A~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~ 415 (764)
+........... -+..|...+..+.+...++.++
T Consensus 458 ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 458 SVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 554443221110 2334555555555544555444
No 360
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.45 E-value=1.3e+02 Score=26.02 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=25.0
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhc
Q 004279 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
..++.+++..+++.|.--.+-.+...++... .+.+.|++.+|+.+|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 3556666666666553221111222223222 235556666666666666554
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.13 E-value=25 Score=26.39 Aligned_cols=47 Identities=9% Similarity=-0.194 Sum_probs=29.6
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHH
Q 004279 134 KGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLC 180 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~ 180 (764)
.....++|+..|....++..-+|+.+ ++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777665543333332 566677777777777766664
No 362
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.11 E-value=82 Score=24.31 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHH
Q 004279 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414 (764)
Q Consensus 348 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 414 (764)
.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. + .+..|..++.++-..|.-.-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-CCcHHHHHHHHHHHcCchhhh
Confidence 3445555555533 22222222222224466666666666666 4 566666666666666654433
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.07 E-value=72 Score=26.54 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccC
Q 004279 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
+..+-++......+.|++......|++|.+.+|+..|.++++.+....
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 344455556666777888888888888888888888888888776533
No 364
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.93 E-value=1.1e+02 Score=28.63 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=22.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH----HHHhcCChHHHHHHHH
Q 004279 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS----GYVNCGFHNSAMEALQ 673 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~~~~g~~~~a~~~~~ 673 (764)
-|......|+.++|++..+.+.-.-+.-|...+-.|.. -+.+.|..++|+++.+
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444555555555555554432222233222222221 2344555555555544
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.87 E-value=35 Score=32.97 Aligned_cols=69 Identities=12% Similarity=-0.068 Sum_probs=50.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCChh
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEV 194 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 194 (764)
..+...+.|..+|.+.+|.++.++...-+ +.+...|-.|+..++..||--+|.+-++.+.+ .|+..|..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 45566778888899999999888876544 34667888888888888888777777777643 35555443
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.69 E-value=1.7e+02 Score=26.83 Aligned_cols=125 Identities=13% Similarity=0.025 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCCch--hHH
Q 004279 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG-----FIRAIVSDRGLRNGMEVLKIMQQNNLKPQD--STI 366 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~ 366 (764)
..|..++.... .+.+ +.....+.+.... ...+|.. +-..++..+++++|..-++.....-..-+. ..-
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHH
Confidence 47777777765 3444 5666667776542 2333332 234577899999999999987754221111 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 367 ATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 367 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
-.|.+.....|.+|+|...++.....+ .......--+.+...|+-++|..-|++-.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 246677888999999999999987653 111122234678999999999999999887
No 367
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.61 E-value=3.7e+02 Score=30.85 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHH
Q 004279 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR------IDVIEF 635 (764)
Q Consensus 562 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~ 635 (764)
.+..+++-....--.-++..+|.++..|++..+ +...-.++.....+-. ..+-..-.++.|.+.+. +..+.+
T Consensus 611 ~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~-~~ll~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 611 QAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER-DDLLLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc-cchHHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHH
Confidence 444444444443334577888888888887544 4444444443322111 22222334555655543 334555
Q ss_pred HHHHHHHC
Q 004279 636 IIEQMHQN 643 (764)
Q Consensus 636 ~~~~m~~~ 643 (764)
+|+++.+.
T Consensus 689 l~~~aVdl 696 (911)
T KOG2034|consen 689 LFEDAVDL 696 (911)
T ss_pred HHHHHHHH
Confidence 55555543
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=53.35 E-value=1.1e+02 Score=24.28 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHH
Q 004279 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181 (764)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 181 (764)
..++|..+-+.+...+-. ...+--.-++.+.+.|+|++|..+.+.+ ..||...|-+|-. .+.|-.+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 455666666666555411 2223334455677888888888877644 2578777776643 4566667777777
Q ss_pred HHHHhcCCCCChhhH
Q 004279 182 DLMDSRMVGKNEVTY 196 (764)
Q Consensus 182 ~~m~~~g~~p~~~t~ 196 (764)
.+|...| .|...+|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 7776665 3444444
No 369
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.37 E-value=2e+02 Score=26.39 Aligned_cols=20 Identities=5% Similarity=-0.195 Sum_probs=9.2
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 004279 302 ACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 302 ~~~~~g~~~~a~~~~~~m~~ 321 (764)
.+...|+-++|..-|..-.+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 34444444444444444443
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.82 E-value=61 Score=21.67 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=14.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 004279 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655 (764)
Q Consensus 626 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 655 (764)
+.|-.+++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 444444555555555555555555444433
No 371
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.80 E-value=3.3e+02 Score=28.61 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=84.6
Q ss_pred cCCHHHH-HHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHH
Q 004279 171 LHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 171 ~g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
.|++-.| .+++..++...-.|+.+-..+.| +...|+++.+.+.+....+-......+...+++...+.|+++.|..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4666554 45566666655566666555554 46789999999999988887778888999999999999999999999
Q ss_pred HHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004279 250 LQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 250 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 323 (764)
-+.|....+.... .........-+.|-++++...+++....+
T Consensus 380 a~~~l~~eie~~e--------------------------------i~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 380 AEMMLSNEIEDEE--------------------------------VLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHhccccCChh--------------------------------heeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9988865554433 11111222334566788888888887654
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.46 E-value=70 Score=29.40 Aligned_cols=32 Identities=25% Similarity=0.114 Sum_probs=18.1
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHHh
Q 004279 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554
No 373
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.42 E-value=2.6e+02 Score=28.32 Aligned_cols=78 Identities=8% Similarity=-0.038 Sum_probs=47.5
Q ss_pred chHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc---cCCHHHHHHHH
Q 004279 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK---GGYLEEASNLI 145 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 145 (764)
+.-+.++++..+.+ +-+.......|+.+.+..+.+...+-|+.+.... +-+...|...|..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 45566677766664 3444456667777777777777777788877763 3356666666655443 22455555555
Q ss_pred HHH
Q 004279 146 YFL 148 (764)
Q Consensus 146 ~~~ 148 (764)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 444
No 374
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.62 E-value=1.8e+02 Score=25.18 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHccCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004279 543 NAATYNIMIDCCSIIRC-FKSASALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 543 ~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
+..+|.+++.+.++..- ---+..+|.-|.+.+.++++.-|..+|.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33444455544443333 22334444444444444555555555544443
No 375
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.61 E-value=2.6e+02 Score=26.93 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=95.0
Q ss_pred ccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHH
Q 004279 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 239 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 318 (764)
+..++++|+.-|++..+. .+... . ..+ -+.--+|..+.+.+++++..+.|.+
T Consensus 39 ~e~~p~~Al~sF~kVlel--EgEKg------------e------------WGF--KALKQmiKI~f~l~~~~eMm~~Y~q 90 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLEL--EGEKG------------E------------WGF--KALKQMIKINFRLGNYKEMMERYKQ 90 (440)
T ss_pred cccCHHHHHHHHHHHHhc--ccccc------------h------------hHH--HHHHHHHHHHhccccHHHHHHHHHH
Confidence 455788888888888773 22210 0 000 1334467888899999999999988
Q ss_pred HHH---CCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004279 319 MQS---LGLQ--PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-----NNLKPQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 319 m~~---~g~~--p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 388 (764)
|.. ..+. -+..+.|+++.-.....+.+....+++.-.+ .+-...-.|-..|-..|...|++....+++++
T Consensus 91 lLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq 170 (440)
T KOG1464|consen 91 LLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ 170 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH
Confidence 863 1121 2344667777766666666655555544332 11111222334566677777777777777777
Q ss_pred HhhCC--------------CCcchHHHHHHHhcCCCHHHHHHHHHHHhh--ccCCCHHh
Q 004279 389 ISRCT--------------NPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRT 431 (764)
Q Consensus 389 ~~~~~--------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~p~~~t 431 (764)
+...- -...|..=|..|....+-.+...+|++... ...|.+..
T Consensus 171 Lh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 171 LHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred HHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 64321 123455556666666666666666666554 34444433
No 376
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=47.86 E-value=5.5e+02 Score=30.58 Aligned_cols=135 Identities=18% Similarity=0.067 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhc-CCcchHHHHHHHhhhccCCC
Q 004279 7 RTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSL 85 (764)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~-~~~~~A~~~~~~~~~~~~~~ 85 (764)
|.-....++.+...+++.+|+ .++++.. -.++=...++|+. +..-+..+.++ ++.+-.-.++..+...++.
T Consensus 694 R~LVL~~ir~~Ld~~~Y~~Af-~~~RkhR--IdlNll~Dh~p~~----Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt- 765 (928)
T PF04762_consen 694 RALVLAGIRKLLDAKDYKEAF-ELCRKHR--IDLNLLYDHNPEQ----FLENIELFVEQIKDVDYLNLFLSSLRNEDVT- 765 (928)
T ss_pred HhHHHHHHHHHHhhccHHHHH-HHHHHhc--cccceEEECCHHH----HHHHHHHHHHhcCCHHHHHHHHHhccccccc-
Confidence 445566777888999999999 7777662 1233334555553 33333444443 4444444455555544321
Q ss_pred CcchHHHHH------------HHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC--CHHHHHHHHHHHhhh
Q 004279 86 GADDFFHIL------------NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG--YLEEASNLIYFLGER 151 (764)
Q Consensus 86 ~~~~~~~ll------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~ 151 (764)
...|.... ......++.....+.+....+.. .....-...+|.+|++.+ ++++|+.+..++.+.
T Consensus 766 -~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 766 -KTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred -ccccccccccccccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 12222222 11111223333444443333321 123334557788888888 888888888888643
No 377
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.78 E-value=2.3e+02 Score=28.40 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=46.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-HHH
Q 004279 550 MIDCCSIIRCFKSASALVSMMVRD---GFYPQTMTY--TALIKILLDYGDFDEALNLLDLVSL-----EGIPHDVL-LYN 618 (764)
Q Consensus 550 ll~~~~~~~~~~~a~~~~~~~~~~---g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~-~~~ 618 (764)
++...-+.++.++|+++++++.+. --.|+...| +.+...+...|+..++.+++++..+ -+++|++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 334445556788888888887753 234555554 3455566677888888888877765 46666443 344
Q ss_pred HHHHHH
Q 004279 619 TILKKA 624 (764)
Q Consensus 619 ~li~~~ 624 (764)
.+-.-|
T Consensus 161 ~lssqY 166 (380)
T KOG2908|consen 161 SLSSQY 166 (380)
T ss_pred HHHHHH
Confidence 444433
No 378
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.67 E-value=98 Score=26.87 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=43.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004279 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 601 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
+.+.+.+.|+++.. --..++..+...++.-.|.++++++.+.+...+..|.+..+..+...|-+.
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 34445556776654 233455556666666788888888888777777777777777777776543
No 379
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.57 E-value=76 Score=21.23 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=16.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004279 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
+.|-++++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555555444
No 380
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.10 E-value=5.4e+02 Score=29.69 Aligned_cols=318 Identities=16% Similarity=0.083 Sum_probs=162.4
Q ss_pred chHHHHHHHhhhccCCC---C----cchHHHHHHHhhCC----CChhHHHHHHHH----HHHcCccccHHHHHHHHHHHH
Q 004279 69 SRASHLLLNLGHAHHSL---G----ADDFFHILNYCARS----PDPLFVMETWRM----MEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 69 ~~A~~~~~~~~~~~~~~---~----~~~~~~ll~~~~~~----~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~ 133 (764)
+....+++++...|... | -..|+.++.-+.+. +......+++.. ..+.|. |+ ..|....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~~-----eAI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-PS-----EAIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-hH-----HHHHHHH
Confidence 45566666666665422 2 23366665544432 222333444433 333442 22 2244455
Q ss_pred ccCCHHHHHHHHHHHhhh--------------cCCCCChh-hhH--HHHHH--HhccCCHHHHHHHHHHHHhcCCCCChh
Q 004279 134 KGGYLEEASNLIYFLGER--------------YGIYPILP-VYN--SFLGA--CAKLHSMVHANLCLDLMDSRMVGKNEV 194 (764)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~--------------~~~~~~~~-~~~--~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (764)
+.|+++.|..++++...+ ..++++.. .+. .++.+ ..-..++.+|..++.+....-..|+..
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~ 451 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS 451 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc
Confidence 678888887777654111 11221111 111 12222 344689999999998876653333322
Q ss_pred -------hHHHHHH-HHHhccChhHHHHHHHHHHcc-----CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhccc
Q 004279 195 -------TYTELLK-LAVWQKNLSAVHEIWEDYIKH-----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 195 -------t~~~ll~-~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 261 (764)
.++.+-. .....|+++.+.++-+..... ..+....+..+..+..-.|+.+.|..+..+..+..-.-+
T Consensus 452 ~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 452 RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 2333322 234578899999988888764 456677888888999999999999999888877433333
Q ss_pred chhcccccccccccccCCCccCCcccchhhhHhhHHHHH--HHHHccCCH--HHHHHHHHHHHHCC--CCC----CcccH
Q 004279 262 LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI--HACGRTQNS--GLAEQLMLQMQSLG--LQP----SSHTY 331 (764)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~--~~a~~~~~~m~~~g--~~p----~~~t~ 331 (764)
.... ..|..+. ..+...|+. ......|....... -+| -..++
T Consensus 532 ~~~l----------------------------~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 532 VYHL----------------------------ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred cHHH----------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 3111 2343332 334556643 33333444333221 111 11233
Q ss_pred HHHHHHHHh-cCChhHHHHHHHHHHHCCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHHHhhCC---C-CcchHHHH--
Q 004279 332 DGFIRAIVS-DRGLRNGMEVLKIMQQNNLKPQDSTIA--TLSVECSKALELDLAEALLDQISRCT---N-PKPFSAFL-- 402 (764)
Q Consensus 332 ~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~~li-- 402 (764)
..++.++.+ .+...++..-++.-......|-..-+. .|+..+...|++++|...++++.... . .+-|.+.+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 334444433 111122222222222222222222222 56777888899999999888886532 1 22232221
Q ss_pred ---HHHhcCCCHHHHHHHHHH
Q 004279 403 ---AACDTMDKPERAIKIFAK 420 (764)
Q Consensus 403 ---~~~~~~g~~~~a~~l~~~ 420 (764)
.-....|+..++.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 123445676666655544
No 381
>PRK09687 putative lyase; Provisional
Probab=44.99 E-value=3.2e+02 Score=26.98 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=5.1
Q ss_pred HHHHHHHHHHccC
Q 004279 124 CYLLMMQALCKGG 136 (764)
Q Consensus 124 ~~~~li~~~~~~g 136 (764)
.....+.++...|
T Consensus 39 vR~~A~~aL~~~~ 51 (280)
T PRK09687 39 KRISSIRVLQLRG 51 (280)
T ss_pred HHHHHHHHHHhcC
Confidence 3333344444333
No 382
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=44.96 E-value=5.3e+02 Score=29.58 Aligned_cols=287 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC--CCcchHHHHHHHhcCCCHHHHHHHHHHHhh--ccCCCHHhHHHHHHHhcCCC
Q 004279 368 TLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 368 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~p~~~t~~~ll~~~~~~~ 443 (764)
.++..+.++|+++.|.++.++..... -...+.....++.++-....=.++-.+|.. |-.+...--.++-...+++.
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~~DpyK~AvY~iig~cd 409 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNSTDPYKLAVYKIIGGCD 409 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhccccCChHHHHHHHHHhcCc
Q ss_pred CchhhchhhhhhhhHHHHHHHHHHHHHCCCCC------cHHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChhhHHHHHH
Q 004279 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQH------SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517 (764)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~ 517 (764)
-...-..+...+++.-+++-........|..+ .......++..|+ .+.|..-+..|-...+.-++.
T Consensus 410 ~~~~~~ev~~tiED~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG--------~sYFt~ng~~p~~Yf~~LlLs 481 (835)
T KOG2168|consen 410 LRRDLPEVADTIEDFLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYG--------ESYFTNNGSQPLLYFQVLLLS 481 (835)
T ss_pred cccccHHHHhHHHHHHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhH--------HHhhccCCCChHHHHHHHHHH
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 004279 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFD 596 (764)
Q Consensus 518 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~ 596 (764)
|.++.|+..+..+...+ .|.+.+.+.+.-+.-.+.-....+=+--+.....++. ..-+..||.+|.++=+..
T Consensus 482 -----gqfe~AI~fL~~~~~~~--~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~ 554 (835)
T KOG2168|consen 482 -----GQFERAIEFLHREEPNR--IDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEYT 554 (835)
T ss_pred -----HhHHHHHHHHHhhcCCc--chhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------------------------------HcCCHHHHHHHHHHHHH
Q 004279 597 EALNLLDLVSLEGIPHDVLLYNTILKKAC----------------------------------EKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~----------------------------------~~g~~~~a~~~~~~m~~ 642 (764)
.+....+-..--...+|..--+.++.+.+ ..-..+-+.++-.+..+
T Consensus 555 d~~~al~y~~~lr~~~d~q~~~l~l~~v~~lVl~t~~~f~~iLG~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~~a~~ 634 (835)
T KOG2168|consen 555 DTRVALQYYYLLRLNKDPQGSNLFLKCVCELVLETEEEFDLILGKIKPDGSREPGLLDEFLPLIEDLQKIILEVASEADE 634 (835)
T ss_pred cchhhhheeeeecccCChhHHHHHHHHHHHHHHhccccHHHHhcccCCCCCCCcchHhhhccchhhHHHHHHHHHHHHHh
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004279 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 643 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
.|. |.--+..|-.+|+++.|++++.+.
T Consensus 635 ~G~------~~~sI~LY~lag~yd~al~link~ 661 (835)
T KOG2168|consen 635 DGL------FEDAILLYHLAGDYDKALELINKL 661 (835)
T ss_pred cCC------HHHHHHHHHHhhhhhHHHHHHHHH
No 383
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.70 E-value=3.4e+02 Score=27.26 Aligned_cols=146 Identities=15% Similarity=0.074 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHcCc----cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004279 104 LFVMETWRMMEEKEI----GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 104 ~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
..|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... .++......++.+++...+.+...+
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 467888888777422 34666777788888888887776666665542 2456678899999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhccCh--hHHHHH----HHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 004279 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNL--SAVHEI----WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~--~~a~~~----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 253 (764)
+++.....+..+.... ..++.++...+.. +.+.+. |+.+.+....+......++..+...-..++-..-++.+
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 9999888642333333 3444444433333 444444 44444445555446667777655433333333333333
Q ss_pred H
Q 004279 254 V 254 (764)
Q Consensus 254 ~ 254 (764)
.
T Consensus 302 ~ 302 (324)
T PF11838_consen 302 F 302 (324)
T ss_dssp H
T ss_pred H
Confidence 3
No 384
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.11 E-value=1.8e+02 Score=23.76 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=22.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 321 (764)
-|..|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 677888888888888888888888776
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.21 E-value=1.1e+02 Score=27.99 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004279 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
.|++.+|..++..+...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666666666666666666655
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.11 E-value=43 Score=23.92 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+...++++.+.. ..-|...--.++.+|...|++++|.++++.+..
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444432 122333333467788888888888888776654
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.08 E-value=4.7e+02 Score=28.44 Aligned_cols=159 Identities=11% Similarity=-0.045 Sum_probs=90.9
Q ss_pred hccChhHHHHHHHHHHccCCC---------CHH---hHHHHHHHhhccCCHHHHHHHHHHH-------HHhhhcccchhc
Q 004279 205 WQKNLSAVHEIWEDYIKHYSL---------SIF---SLRKFVWSFTRLRDLKSAYETLQHM-------VALAMMGKLYIN 265 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~---------~~~---~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~~~~~~~ 265 (764)
..+.++++...|...++...| +++ +.-.+..++-..|+.+.|..+.++. ....+.|..-
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg-- 327 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG-- 327 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc--
Confidence 345566777777766653222 233 3444445566777777666655543 3322222220
Q ss_pred ccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hcCCh
Q 004279 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SDRGL 344 (764)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~ 344 (764)
.. ..+......+... -+.-.-|..+.+.|.+..|+++-+-+.+....-|......+|..|+ +.+++
T Consensus 328 --------~c----RL~y~~~eNR~Fy-L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareY 394 (665)
T KOG2422|consen 328 --------NC----RLPYIYPENRQFY-LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREY 394 (665)
T ss_pred --------cc----cCcccchhhHHHH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhH
Confidence 11 1112222223322 1222345667889999999999998888765557888888888877 67778
Q ss_pred hHHHHHHHHHHHCC---CCCchhHHHHHHHHHHhcCC
Q 004279 345 RNGMEVLKIMQQNN---LKPQDSTIATLSVECSKALE 378 (764)
Q Consensus 345 ~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~ 378 (764)
.-..++++.....+ .-||-.--.+|...|.+...
T Consensus 395 qwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 395 QWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred HHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCC
Confidence 77777777765433 34544433456555555443
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.71 E-value=1.7e+02 Score=24.64 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=36.3
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCcccc-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 004279 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLN-NKCYLLMMQALCKGGYLEEASNLIYF 147 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 147 (764)
|..+--.|+.. .+.+.++|..|...|+... ...|..-...+...|++++|.++|+.
T Consensus 68 ylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 68 YLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44444444433 2377888888888776443 44677777777888888888888763
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.64 E-value=2.5e+02 Score=30.42 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=94.0
Q ss_pred ccHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHH
Q 004279 120 LNNKCYLLMMQALCKG--GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 197 (764)
|+..+...++.-.... ..-+-|-.+|..|. ..+.|-..+.|.-.--..-.|+...|.+.+.......+.-.-+...
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 4555555555444332 22345556666664 2334544444433322344699999999988876654444445566
Q ss_pred HHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
.|.+...+.|-...|..++.+...-....+-++..+.++|.-..+++.|++.|.+..+ ..|+.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~--~~~~~ 709 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALK--LTTKC 709 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHh--cCCCC
Confidence 6777777888888888888888776667778888999999999999999999999887 44443
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.51 E-value=27 Score=29.36 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004279 595 FDEALNLLDLVSLEGIPHDVLLYNTILK 622 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~ 622 (764)
-.+|..+|++|+..|-+|| .|+.|+.
T Consensus 111 k~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3444555555555554444 3444443
No 391
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.49 E-value=9.2e+02 Score=31.62 Aligned_cols=327 Identities=11% Similarity=-0.004 Sum_probs=162.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccC-CCCcchHHHHHH-HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004279 59 IVDALCRGERSRASHLLLNLGHAHH-SLGADDFFHILN-YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 136 (764)
..+--+.+.+.+|+-.|++-..... +--...+..++. .|+..++++....+...-. .+...++. |......|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHhhc
Confidence 3455677889999999988422111 111233444554 8999999998887776411 12223333 44677889
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhccChhHHHHH
Q 004279 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL-LKLAVWQKNLSAVHEI 215 (764)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~ 215 (764)
++..|...|+.+.+.+ ++....++.+++.-...|.+..++-..+..... ..+....++++ +.+-=+.++++.....
T Consensus 1464 ~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred cHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 9999999999998654 233567887777777778888777755554433 22333333332 2222345555555554
Q ss_pred HHHHHccCCCCHHhHHHH--HHHhh--ccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhh
Q 004279 216 WEDYIKHYSLSIFSLRKF--VWSFT--RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l--i~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
.. . .+..+|... ..... +..|.-.-.+..+.+.+.-+.|-.... .. + -
T Consensus 1541 l~---~---~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s--------------------~~-~-S 1592 (2382)
T KOG0890|consen 1541 LS---D---RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACS--------------------IE-G-S 1592 (2382)
T ss_pred hh---c---ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhh--------------------cc-c-h
Confidence 44 1 111122211 11111 111211111333333332222111000 00 0 0
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH-HH-----HHHHHHhcCChhH-HHHHHHHHHHC----CCC
Q 004279 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY-DG-----FIRAIVSDRGLRN-GMEVLKIMQQN----NLK 360 (764)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~-----li~~~~~~~~~~~-a~~~~~~m~~~----~~~ 360 (764)
....|..+++...-..-......++ ++.++..+. +. -+..-....+..+ .+.+-+.+... +..
T Consensus 1593 y~~~Y~~~~kLH~l~el~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~ 1666 (2382)
T KOG0890|consen 1593 YVRSYEILMKLHLLLELENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLK 1666 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccccc
Confidence 0135555555443222111111111 122222221 11 1111111111111 11111112111 221
Q ss_pred C-chhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhccCCC
Q 004279 361 P-QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD 428 (764)
Q Consensus 361 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~p~ 428 (764)
. -..+|-...+..-++|+++.|...+-...+..-+..+--...-.-+.|+...|+.++++..+...|+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 1 2335666777777789999998766655554356666667777888999999999999887633343
No 392
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.44 E-value=3e+02 Score=26.05 Aligned_cols=94 Identities=9% Similarity=0.076 Sum_probs=43.7
Q ss_pred ccCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 004279 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568 (764)
Q Consensus 489 ~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 568 (764)
..+++++|.+.+-.....|+- -.-++.++...|+...|+.+++.+.-..- +......++.. ...+.+.+|..+-+
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred ChHhHHHHHHHhCCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 445666666666333222221 12356666666777777776666433211 11222222222 33356666666555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH
Q 004279 569 MMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 569 ~~~~~g~~p~~~~~~~li~~~~ 590 (764)
...+.. ....+..++..+.
T Consensus 165 ~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 165 SYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred hCchhh---hHHHHHHHHHHHH
Confidence 443310 1234444555444
No 393
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.43 E-value=1.1e+02 Score=33.39 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=31.2
Q ss_pred hHHHHHHHHHccCCHH------HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004279 295 SFSDVIHACGRTQNSG------LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 354 (764)
.||..|+.+.+.|.++ .|.+++++.. +.-|..||..++.+....-.-...+-++.++
T Consensus 67 ~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 67 MINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALLCQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHHHHhhcChHhHHhccHHHHHH
Confidence 6777777777777653 3333333333 4557777777776655433333333333333
No 394
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.64 E-value=1e+02 Score=21.25 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=14.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhh
Q 004279 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPST 651 (764)
Q Consensus 622 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 651 (764)
-++.+.|++++|.+..+.+++ +.|+..-
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 345566666666666666654 4555543
No 395
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.07 E-value=3.9e+02 Score=26.86 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004279 560 FKSASALVSMMVRDGF----YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 560 ~~~a~~~~~~~~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
.+.|.+.|+.....+. ..++..-..++....+.|..++-..+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888888877422 44566666777777888886665556555542 3467778888999988899999899
Q ss_pred HHHHHHHCC-CCCCHhhHHHHHHHHHhcCCh--HHHHHHHHH
Q 004279 636 IIEQMHQNK-VQPDPSTCHFVFSGYVNCGFH--NSAMEALQV 674 (764)
Q Consensus 636 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~--~~a~~~~~~ 674 (764)
+++.....+ +++.. . ..++.++...+.. +.+.++++.
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 999998754 44433 3 3445555534433 555555543
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.54 E-value=53 Score=18.90 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHccCCCCHHhHHHHHH
Q 004279 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVW 235 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~ 235 (764)
+.+.+..+|+.+.+..+.+...|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555666666666555555555554443
No 397
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=40.16 E-value=59 Score=17.98 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 004279 583 TALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m 605 (764)
..+...+...|++++|...++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444443
No 398
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.98 E-value=2.9e+02 Score=25.16 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=17.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 004279 333 GFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 333 ~li~~~~~~~~~~~a~~~~~~m~~~ 357 (764)
+++-.|-+..+|.++.++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777654
No 399
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.46 E-value=4.2e+02 Score=26.50 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=9.5
Q ss_pred HHHHHHccCChhHHHHHHH
Q 004279 550 MIDCCSIIRCFKSASALVS 568 (764)
Q Consensus 550 ll~~~~~~~~~~~a~~~~~ 568 (764)
...-||+.|+.+.|++.+.
T Consensus 110 kaeYycqigDkena~~~~~ 128 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALR 128 (393)
T ss_pred HHHHHHHhccHHHHHHHHH
Confidence 3344555555555555443
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.98 E-value=1.9e+02 Score=26.15 Aligned_cols=48 Identities=6% Similarity=0.133 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCCh--hhHH-----HHHHHHHhccChhHHHHHHHHHHc
Q 004279 174 MVHANLCLDLMDSRMVGKNE--VTYT-----ELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~--~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
++.|+.+++.+.+....|.. .... ..+-.|.+.|.+++|.++++++..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 36666677666654322211 1111 233367788888888888887765
No 401
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=37.94 E-value=3.1e+02 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004279 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 294 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 323 (764)
..|+.-+... ++|-++..++.+.+
T Consensus 114 e~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 114 ELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 5787777665 35667777776654
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.73 E-value=1.4e+02 Score=20.62 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=23.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhccCCCHHhHHHH
Q 004279 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELL 435 (764)
Q Consensus 401 li~~~~~~g~~~~a~~l~~~m~~~~~p~~~t~~~l 435 (764)
+.-++.+.|++++|.+..+.+.+ +.|+..-...+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~-~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE-IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH-HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh-hCCCcHHHHHH
Confidence 45577888899999888888887 66766555444
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.73 E-value=60 Score=31.80 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=31.9
Q ss_pred CChh-hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004279 507 LGTP-TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550 (764)
Q Consensus 507 ~~~~-~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l 550 (764)
||.. -||..|..-.+.|++++|+.+++|.++.|+.--..||...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3443 4678888888888888888888888888876555555433
No 404
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.79 E-value=3.4e+02 Score=29.45 Aligned_cols=142 Identities=14% Similarity=0.023 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHhhcccchhhhhccccc-cch-hhhhcccc---------CC-chhhhHHH--HHHHHHHHHhcCCcchHH
Q 004279 7 RTRFQLIADSFCKSKFHKHERRNVANK-LEL-SRTLTTTM---------GL-NEESISKA--TQMQIVDALCRGERSRAS 72 (764)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~a~~~~~~~-~~~-~r~~~~~~---------~~-~p~~~~~~--~~~~i~~~~~~~~~~~A~ 72 (764)
..+|.-++..+..+|..+-|- .++++ ... .|.++... .+ .|+..... +...+..+.+.|-|.-|.
T Consensus 284 vdsLLqva~~~r~qgD~e~aa-dLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAA-DLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHH-HHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHH
Confidence 346777777888888887776 33222 111 12222222 11 12321111 223456667789999999
Q ss_pred HHHHHhhhccCCCCcchHHHHHHHhh-CCCChhHHHHHHHHHHHcC---ccccHHHHHHHHHHHHccCC---HHHHHHHH
Q 004279 73 HLLLNLGHAHHSLGADDFFHILNYCA-RSPDPLFVMETWRMMEEKE---IGLNNKCYLLMMQALCKGGY---LEEASNLI 145 (764)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 145 (764)
+...-+.+.+..-|+.....++..|+ +..++.-.+++++.....+ ..||-.--.+|...|..... -..|...+
T Consensus 363 E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l 442 (665)
T KOG2422|consen 363 EWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNAL 442 (665)
T ss_pred HHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHH
Confidence 99998888775556777777887776 6788888888888775432 34554444456666665544 34555555
Q ss_pred HHHh
Q 004279 146 YFLG 149 (764)
Q Consensus 146 ~~~~ 149 (764)
.+..
T Consensus 443 ~qAl 446 (665)
T KOG2422|consen 443 LQAL 446 (665)
T ss_pred HHHH
Confidence 5554
No 405
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.64 E-value=7.2e+02 Score=28.72 Aligned_cols=177 Identities=10% Similarity=-0.022 Sum_probs=97.8
Q ss_pred HHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhHHHHHHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchH
Q 004279 11 QLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDF 90 (764)
Q Consensus 11 ~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 90 (764)
+.+=..|+..|+++.|+ ..++. .|+.....+......|.+.+++..|-++|.++.+ .|
T Consensus 362 R~vWk~yLd~g~y~kAL-~~ar~-------------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~F 419 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKAL-EIART-------------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SF 419 (911)
T ss_pred HHHHHHHHhcchHHHHH-HhccC-------------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hH
Confidence 45667899999999999 44432 2566666677777778888999999999988732 45
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH-----HHHHHH-ccCCH----HHHHHHHHHH--------hhhc
Q 004279 91 FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL-----MMQALC-KGGYL----EEASNLIYFL--------GERY 152 (764)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~-~~g~~----~~A~~~~~~~--------~~~~ 152 (764)
..+.--+....+.+....++.+-+++ ++|...+... ++..|. +.+++ +++..-++.- ....
T Consensus 420 EEVaLKFl~~~~~~~L~~~L~KKL~~-lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~ 498 (911)
T KOG2034|consen 420 EEVALKFLEINQERALRTFLDKKLDR-LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFL 498 (911)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555333333333322 3333322222 222222 22222 2232222211 0000
Q ss_pred CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHH
Q 004279 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
...-+...+.+....+...|+.+.+..+-..|.+ |..++.-+...+.+++|++++..-
T Consensus 499 ~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 499 VLHKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111222344444555667777777776555554 456677777788888887776544
No 406
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.18 E-value=3.1e+02 Score=27.49 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHH--HHHHHHccCChhHHHHHHHHHHH-----CCCCCCHHH
Q 004279 513 NTVLHSLVEAQESHRAMEIFKQMKTC---GIPPNAATYNI--MIDCCSIIRCFKSASALVSMMVR-----DGFYPQTMT 581 (764)
Q Consensus 513 ~~li~~~~~~~~~~~A~~l~~~m~~~---g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~-----~g~~p~~~~ 581 (764)
..++...-+.++.++|++.++++.+. --.|+.+.|.. +..++...|+..++.+++++..+ .+++|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 34455556667999999999998754 23577777654 44556678999999999998887 577776543
No 407
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=35.94 E-value=3e+02 Score=24.02 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=59.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcCCH
Q 004279 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF-IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379 (764)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 379 (764)
..-...++++++..+++.|.-. .|+......+ .-.+...|++.+|..+|+.+.+.+..+ .....|+..|....
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~--p~~kAL~A~CL~al-- 91 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP--PYGKALLALCLNAK-- 91 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc--hHHHHHHHHHHHhc--
Confidence 3344578888888888888764 4544433222 223567888888888888888765331 12223333222221
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 380 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
.-..|..........+...++..+.+.+..
T Consensus 92 --------------~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 92 --------------GDAEWHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred --------------CChHHHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 223455555555556666666666666654
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.62 E-value=1.2e+02 Score=26.25 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=15.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004279 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 298 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 330 (764)
.++..+.+.+..-.|.++++++.+.+...+..|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 344444444444555555555555443333333
No 409
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.49 E-value=6e+02 Score=27.40 Aligned_cols=101 Identities=10% Similarity=-0.121 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004279 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
++..+.+..+.+..|+..+......++. ...|+...|+.++++....+ ....|+..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh---------------
Confidence 4445556655555566555555544432 34588888888887765432 1234444443322
Q ss_pred HHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
...+...+..++.+....+....|+.+++++.+.|..|..
T Consensus 244 ----g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 ----GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred ----CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 1224445555666555555667899999999998888765
No 410
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.20 E-value=63 Score=31.67 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=27.6
Q ss_pred CChh-hhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 004279 156 PILP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 156 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
||.. -||.-|....+.||+++|+.++++.++.|+.--..||
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4443 3567777778888888888888888877765333333
No 411
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.02 E-value=4.6e+02 Score=25.64 Aligned_cols=197 Identities=12% Similarity=-0.021 Sum_probs=103.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccCCCCcch-------HHHHHHHhhCCCChhHHHHHHHHHHHc----CccccHHHH
Q 004279 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADD-------FFHILNYCARSPDPLFVMETWRMMEEK----EIGLNNKCY 125 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 125 (764)
.......+.++.++|+..|..+...|+..+..+ ...+.+.|...|++....+......+. .-+....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 345667788999999999999998887766544 445667778888877655554443321 112233445
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHhh----hcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH----HHhcCCCCChhhH
Q 004279 126 LLMMQALCKG-GYLEEASNLIYFLGE----RYGIYPILPVYNSFLGACAKLHSMVHANLCLDL----MDSRMVGKNEVTY 196 (764)
Q Consensus 126 ~~li~~~~~~-g~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~ 196 (764)
..||..+... ..++.-+.+.....+ ..........-..+|..+.+.|.+.+|+.+... +++..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5556555433 234444444443322 100000111223477788888888888877544 3443445555544
Q ss_pred HHHH-HHHHhccChhHHHHHHHHHHc-----cCCCCHHhHHHHHHHhh--ccCCHHHHHHHHHHH
Q 004279 197 TELL-KLAVWQKNLSAVHEIWEDYIK-----HYSLSIFSLRKFVWSFT--RLRDLKSAYETLQHM 253 (764)
Q Consensus 197 ~~ll-~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m 253 (764)
..+= ++|....++.++..-+....- .+||-...---|+.+-. ...++..|...|-+.
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea 232 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEA 232 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHH
Confidence 3332 234444555544444333321 14444444444444332 223444444444443
No 412
>PRK10941 hypothetical protein; Provisional
Probab=33.96 E-value=3e+02 Score=26.92 Aligned_cols=79 Identities=11% Similarity=-0.207 Sum_probs=53.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHH
Q 004279 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKL 202 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~ 202 (764)
..+.+-.+|.+.++++.|+++.+.+..-. +.+..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 44567778899999999999999887533 2233334444555888899999999888887653 23455555555544
Q ss_pred HH
Q 004279 203 AV 204 (764)
Q Consensus 203 ~~ 204 (764)
..
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.83 E-value=1.1e+02 Score=21.94 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004279 584 ALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m 605 (764)
.+|.+|...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555544444
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.34 E-value=37 Score=28.57 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=19.8
Q ss_pred ccCCHHHHHHHHHHHHHhhhcccc
Q 004279 239 RLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 239 ~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+.|.-.+|..+|.+|.+.|-.|++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc
Confidence 446667799999999999988873
No 415
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.99 E-value=5e+02 Score=25.78 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhh
Q 004279 399 SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 399 ~~li~~~~~~g~~~~a~~l~~~m~~ 423 (764)
...+..+...|++..|++++.+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445566666777777777766655
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.67 E-value=2.7e+02 Score=22.64 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 004279 125 YLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~~ 148 (764)
|..|+..|...|..++|++++.++
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHH
Confidence 444444444445555555544444
No 417
>PRK12798 chemotaxis protein; Reviewed
Probab=32.65 E-value=6e+02 Score=26.56 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=117.5
Q ss_pred cCCcchHHHHHHHhhhccCCCCcchHHHHHHHhh-CCCChhHHHHHHHHHHHc--CccccHHHHHHHHHHHHccCCHHHH
Q 004279 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCA-RSPDPLFVMETWRMMEEK--EIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 65 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
.|+.++|.+.+..+.....++....|..|+.+-. ...++..|+.+|++..=. |.-........-|-.....|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 6888999999999987776677777888877555 446888999999876543 2222334455556677888999988
Q ss_pred HHHHHHHhhhcCCCCChh-hhHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004279 142 SNLIYFLGERYGIYPILP-VYNSFLGACAKLH---SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
..+-.+...++...|-.. .+..+..++.+.+ ..+.-..++..|.. .--...|..+-..-.-.|+.+-|.-.-+
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 776666655443333222 2223333444443 23333344443332 1234577778788888899888877777
Q ss_pred HHHccC----CCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 218 DYIKHY----SLSI--FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 218 ~~~~~~----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
+...-. .+.. ..|... +-.-..+++.+.+.+..+....+.+.+
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGA--ALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHH--HccCcccHHHHHHHHhcCChhhCChhh
Confidence 766531 1111 122222 223445688888888887766665554
No 418
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.32 E-value=2.3e+02 Score=31.15 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccC--CCCcchHHHHHHHhhCCCChh------HHHHHHHHHHHcCccccHHHHHHH
Q 004279 57 MQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPL------FVMETWRMMEEKEIGLNNKCYLLM 128 (764)
Q Consensus 57 ~~i~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 128 (764)
+++.+|..+|++.++.++++.+...+. +.-...||..++...+.|.++ .|.++++... +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 558888889998888888888876542 222345777788888887654 2333333333 34477777777
Q ss_pred HHHHHc
Q 004279 129 MQALCK 134 (764)
Q Consensus 129 i~~~~~ 134 (764)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665544
No 419
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.29 E-value=5.1e+02 Score=25.69 Aligned_cols=109 Identities=12% Similarity=0.030 Sum_probs=58.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004279 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.++..+.+.++.....+.+..+.. ...-...+..+...|++..|++++.+..+. .. +-.-|+++=. -.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~---L~ 170 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRH---LS 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHH---Hh
Confidence 445555566666666666666632 334455677777889999999988887653 10 1011111100 01
Q ss_pred cChhHHHHHHHHHHc----c--CCCCHHhHHHHHHHhhccCCHHHHH
Q 004279 207 KNLSAVHEIWEDYIK----H--YSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
.++++.....+.+.. . ..-|+..|..+..+|.-.|+...+.
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 122222222222221 1 3567777777777777777665543
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.14 E-value=2.4e+02 Score=21.87 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=13.5
Q ss_pred hHHHHHHHHHccCCHHHHH
Q 004279 295 SFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~a~ 313 (764)
.|..++.++-..|+-+.|.
T Consensus 68 aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 68 WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHHHcCchhhhh
Confidence 6777788877777766554
No 421
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.72 E-value=4.4e+02 Score=24.73 Aligned_cols=61 Identities=13% Similarity=-0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHHCCCCC----CHhhHHHHHH-HHHhcCChHHHHHHHHHHHH
Q 004279 617 YNTILKKACEKGRI-------DVIEFIIEQMHQNKVQP----DPSTCHFVFS-GYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 617 ~~~li~~~~~~g~~-------~~a~~~~~~m~~~~~~p----~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~ 677 (764)
+--+.+.|...|+. ..|.+.|++..+..-.| +..+...|+. ...+.|+.++|.+.|.++-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 33445555555552 34555555554432221 3334444444 55666777777777776654
No 422
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.52 E-value=2.6e+02 Score=25.02 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=42.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH
Q 004279 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667 (764)
Q Consensus 605 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 667 (764)
+.+.|+++...-. .++......++.-.|.++++.+.+.+..++..|.+..|..+...|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445776665433 3334444455566788999999888877888888888888888886654
No 423
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.50 E-value=2.5e+02 Score=21.89 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004279 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
+.|....-.+...+...|++++|++.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 335555556666677777777777766666544
No 424
>PHA03100 ankyrin repeat protein; Provisional
Probab=31.23 E-value=6.9e+02 Score=26.86 Aligned_cols=208 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCChhhHHH--HHHH-----HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHH
Q 004279 178 NLCLDLMDSRMVGKNEVTYTE--LLKL-----AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~--ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
.++++.+.+.|..|+...... .+.. +...++.+-+.-+++.-..-...+....+.|..+.. ....-.+++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~---~~~~~~~iv 124 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS---KKSNSYSIV 124 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh---cccChHHHH
Q ss_pred HHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004279 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 251 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 330 (764)
+.+.+.|..++.... .-.+.+...+..|. .-.++.+.+.+.|..++...
T Consensus 125 ~~Ll~~g~~~~~~~~-----------------------------~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d 173 (480)
T PHA03100 125 EYLLDNGANVNIKNS-----------------------------DGENLLHLYLESNK--IDLKILKLLIDKGVDINAKN 173 (480)
T ss_pred HHHHHcCCCCCccCC-----------------------------CCCcHHHHHHHcCC--ChHHHHHHHHHCCCCccccc
Q ss_pred H--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHH--------HHHHHHHHhcCC--HHHHHHHHHHHhhCC--CCc
Q 004279 331 Y--DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI--------ATLSVECSKALE--LDLAEALLDQISRCT--NPK 396 (764)
Q Consensus 331 ~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------~~li~~~~~~g~--~~~A~~~~~~~~~~~--~~~ 396 (764)
- .+.+..++..| -.++.+.+.+.|..++.... ...+...+..|+ .+.+..+++.-.... +..
T Consensus 174 ~~g~tpL~~A~~~~----~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~ 249 (480)
T PHA03100 174 RYGYTPLHIAVEKG----NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY 249 (480)
T ss_pred CCCCCHHHHHHHhC----CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhh-ccCCC
Q 004279 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPD 428 (764)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~p~ 428 (764)
-++.|..+..... .++++.+.+ |..|+
T Consensus 250 g~TpL~~A~~~~~-----~~iv~~Ll~~gad~n 277 (480)
T PHA03100 250 GFTPLHYAVYNNN-----PEFVKYLLDLGANPN 277 (480)
T ss_pred CCCHHHHHHHcCC-----HHHHHHHHHcCCCCC
No 425
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.17 E-value=1e+03 Score=28.72 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=78.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHC-CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHH
Q 004279 546 TYNIMIDCCSIIRCFKSASALVSMMVRD-GF-YPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL----LYN 618 (764)
Q Consensus 546 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~ 618 (764)
-|..+++-+-..+..+.+.++-..+++. +. .|. ..+++++.+.....|.+-+|.+.+-+ .||.. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 3677777777888888888888777764 11 122 45678888888888998888877765 45543 455
Q ss_pred HHHHHHHHcCCHHH------------HHH-HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004279 619 TILKKACEKGRIDV------------IEF-IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 619 ~li~~~~~~g~~~~------------a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
-|+...+..|.++. .+. +++..-+....-....|+.|...+.+.++|.+|-.++=+..+
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 66666777766543 333 333222222222233455555666888888888766554443
No 426
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.09 E-value=2.3e+02 Score=24.62 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=41.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004279 604 LVSLEGIPHDVLLYNTILKKACEK-GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 604 ~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
.+.+.|+++...= ..++..+... +..-.|.++++.+.+.+...+..|.+..|..+...|-+.
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445677665432 2333344443 456688899999988887778888888888888877654
No 427
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.81 E-value=2.1e+02 Score=24.38 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=42.3
Q ss_pred CCcchHHHHHHHhhCC---CChhHHHHHHHHHHHcCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004279 85 LGADDFFHILNYCARS---PDPLFVMETWRMMEEKEIGLN-NKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 151 (764)
++..+-..+.-++.+. .|..+.+.+++.+.+...+.. ....-.|.-++.+.|+++.++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4444544455555544 455567888888887332222 223335556788899999999998888654
No 428
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.80 E-value=6.1e+02 Score=26.13 Aligned_cols=128 Identities=12% Similarity=0.000 Sum_probs=73.9
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHh---hhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHH
Q 004279 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL---AMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (764)
.|-.+.++-.+-..+...|+.+.|.+++++..-. ...|.-.. .. .........++......|... .+.---
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~---~~--~~~~~g~~rL~~~~~eNR~ff-lal~r~ 109 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP---FR--SNLTSGNCRLDYRRPENRQFF-LALFRY 109 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh---hh--cccccCccccCCccccchHHH-HHHHHH
Confidence 4555556666666667777777766666665421 11111000 00 000111122223333344432 233345
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 004279 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 300 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~a~~~~~~m~~ 356 (764)
|..+.+.|.+..|+++.+-+......-|.......|+.|+ +.++++-..++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 6778899999999999999998765557777777788776 77778777777776554
No 429
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.78 E-value=2.1e+02 Score=22.48 Aligned_cols=21 Identities=19% Similarity=-0.075 Sum_probs=11.3
Q ss_pred HHHHHccCCHHHHHHHHHHHh
Q 004279 129 MQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~~~ 149 (764)
.......|++++|...+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666655543
No 430
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.61 E-value=3.5e+02 Score=23.19 Aligned_cols=65 Identities=6% Similarity=-0.038 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004279 612 HDVLLYNTILKKACEKGR---IDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 612 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 676 (764)
+...+--.+.+++.+..+ ..+.+.+++.+.+..-+-+ ....+.|.-++.+.|.+++++++++.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 344444445555555443 3445566666654211111 2222333346666666666666666554
No 431
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.40 E-value=6.7e+02 Score=26.45 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=27.8
Q ss_pred HHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 004279 297 SDVIHACGR---TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341 (764)
Q Consensus 297 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 341 (764)
..++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++-..
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 344444444 467888888888888888776655544444444333
No 432
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.27 E-value=5.3e+02 Score=25.27 Aligned_cols=68 Identities=6% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCC
Q 004279 579 TMTYTALIKILLDYGDFDEALNLLDLVSL----EGIPHDVLLYNTILKK---ACEKGRIDVIEFIIEQMHQNKVQPD 648 (764)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~ 648 (764)
...+..+.+-|++.++.+.+.++.++..+ .|.+.|+. -+.|+. |....-+++-++..+.|.++|...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~--l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF--LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH--HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 45566777788888888888777665433 35555542 222222 2222335666677777777765543
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.82 E-value=2.3e+02 Score=22.18 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=17.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhh
Q 004279 233 FVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~m~~~~ 257 (764)
+.......|+.++|...+++..+..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445667788888888888877643
No 434
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.73 E-value=9.7e+02 Score=28.10 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCh--hHHHHHHHHHHHCCCCCCHHHHH--
Q 004279 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN---AATYNIMIDCCSIIRCF--KSASALVSMMVRDGFYPQTMTYT-- 583 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~p~~~~~~-- 583 (764)
-|..|+..|...|+.++|+++|.+.....-.-| ..-+-.++..+.+.+.. +..+++-+-..+....-....++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 578888888888999999998888876320000 01122234433333332 33333322222221000000000
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--------HHHHHHH--HHHH---
Q 004279 584 ----------ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR--------IDVIEFI--IEQM--- 640 (764)
Q Consensus 584 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--------~~~a~~~--~~~m--- 640 (764)
--+-.|......+-+..+++.+....-.++..-.+.++.-|+..=+ .+++.+. .+++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1233456667778888888888776656677777777777764321 2233333 2222
Q ss_pred HH--CCCCCCH--------hhHHHHHHHHHhcCChHHHHHHHHHHHHh----------hhccccCchHhhHHHHHHhhhh
Q 004279 641 HQ--NKVQPDP--------STCHFVFSGYVNCGFHNSAMEALQVLSMR----------MLCEEVSTLEEKRSDFEDLILA 700 (764)
Q Consensus 641 ~~--~~~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 700 (764)
++ ....|.. .-|...--.+.+.|+.++|+.++-..... -...+...+......+.-.+..
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 1233322 12222222445788888888776543320 0110111222222222222222
Q ss_pred --ccHHHHHHHHHHhhhcchhhHHHHhhhhh
Q 004279 701 --EDSEAESRILQFCEDSNENLAFTAALLQL 729 (764)
Q Consensus 701 --~~~~~~~~~~~~~~~~~e~~a~~~~l~~~ 729 (764)
+-......+.+.+..|.+++-.+..+-.+
T Consensus 746 ~~d~~~~~~~il~~l~~h~~r~d~~~~~~~L 776 (877)
T KOG2063|consen 746 IHDYKSGPLYILNFLQKHADRLDLAQVLKLL 776 (877)
T ss_pred hhhccccchhhhhHHHhhhhhcCHHHHHHhC
Confidence 12223345555666777777766666666
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.63 E-value=2e+02 Score=29.93 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=46.6
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHH--hhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHc
Q 004279 228 FSLRKFVWSFTRLRDLKSAYETLQHMVA--LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 305 (764)
++...|++.++-.||+..|+++++.+.- .++-. ..+.-.+ .+|--+.-+|..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~------------------------~V~~~~i--s~~YyvGFaylM 176 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYT------------------------KVPACHI--STYYYVGFAYLM 176 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhc------------------------cCcchhe--ehHHHHHHHHHH
Confidence 3556788888999999999998876531 11111 1111112 477778888999
Q ss_pred cCCHHHHHHHHHHHH
Q 004279 306 TQNSGLAEQLMLQMQ 320 (764)
Q Consensus 306 ~g~~~~a~~~~~~m~ 320 (764)
.+++.+|.+.|....
T Consensus 177 lrRY~DAir~f~~iL 191 (404)
T PF10255_consen 177 LRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 436
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=29.60 E-value=7.7e+02 Score=28.91 Aligned_cols=101 Identities=15% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.+...+++.++.++.|+..+......++... .|+...++.+++++... ...+..|+..+...+. ..
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg-~~---------- 246 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLG-VT---------- 246 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhc-CC----------
Confidence 3444455555544455554544444443322 36777777777665532 2234445444433222 11
Q ss_pred HHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhccc
Q 004279 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 261 (764)
+......++++.. .++...++.+++++.+.|..+.
T Consensus 247 --------~~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 247 --------DSALIDEAVDALA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred --------CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 1122223333333 5678888888888887666543
No 437
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.54 E-value=4.3e+02 Score=28.74 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=12.6
Q ss_pred hHHHHHHHHhhcccchhhh
Q 004279 9 RFQLIADSFCKSKFHKHER 27 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~ 27 (764)
.+.+++-.+.+.|+.-+|-
T Consensus 251 ~lLSlaTiL~RaG~sadA~ 269 (886)
T KOG4507|consen 251 ALLSLATVLHRAGFSADAA 269 (886)
T ss_pred hhhhHHHHHHHcccccchh
Confidence 4556666677777766666
No 438
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=29.16 E-value=24 Score=29.19 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.6
Q ss_pred HHhhhcchhhHHHHhhhhh
Q 004279 711 QFCEDSNENLAFTAALLQL 729 (764)
Q Consensus 711 ~~~~~~~e~~a~~~~l~~~ 729 (764)
+.+..|+|++|++++|+++
T Consensus 58 ~~~~~HSEKlAiafgli~~ 76 (116)
T PF14432_consen 58 ESLCYHSEKLAIAFGLINT 76 (116)
T ss_pred hhhhccHHHHHHHhcccce
Confidence 3578899999999999985
No 439
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=28.86 E-value=7.5e+02 Score=26.53 Aligned_cols=95 Identities=9% Similarity=0.102 Sum_probs=58.5
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHC-CCCCCHhh
Q 004279 576 YPQTMTY-TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC--EKGRIDVIEFIIEQMHQN-KVQPDPST 651 (764)
Q Consensus 576 ~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~-~~~p~~~~ 651 (764)
.|+..++ +.+++.+-+.|-..+|..++..+.... +|+...|..+|..-. .+-+..-+.++++.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555544 567777888888888888888887543 556677776665321 122366777788877653 4 45555
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 004279 652 CHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 652 ~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
|.-.+..=...|..+.+-.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYW 554 (568)
T ss_pred HHHHHHhhccCCCcccccHHHH
Confidence 5544444445666555544443
No 440
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.38 E-value=5.2e+02 Score=24.57 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH--CCCCCCHHH
Q 004279 545 ATYNIMIDCCSIIRCFKSASALVSMMVRD----G-FYPQTMTYTALIKILLDY-GDFDEALNLLDLVSL--EGIPHDVLL 616 (764)
Q Consensus 545 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~--~~~~p~~~~ 616 (764)
.||.-.-++|- .+++.+|...++..++. | +..-...+-.+...|-.- .+++.|+..|+..-+ .|-..+...
T Consensus 75 t~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 34544444443 34666665555544431 1 111122233344444433 456666666665543 222222222
Q ss_pred HHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHH---HHH-HHHhc--CChHHHHHHHHHHH
Q 004279 617 YNTIL---KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF---VFS-GYVNC--GFHNSAMEALQVLS 676 (764)
Q Consensus 617 ~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~-~~~~~--g~~~~a~~~~~~~~ 676 (764)
--.++ .--...+++.+|+.+|++.-...+..+..-|.. ++. ++++. +|.-.+...+++..
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~ 222 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQ 222 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHH
Confidence 22333 233556788999999999887655544444432 332 44442 55555566666543
No 441
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.79 E-value=4.8e+02 Score=23.92 Aligned_cols=18 Identities=0% Similarity=0.025 Sum_probs=9.0
Q ss_pred HHhccChhHHHHHHHHHH
Q 004279 203 AVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~ 220 (764)
....|++++|..-++.+.
T Consensus 39 ~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 39 LLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 344555555555554443
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.64 E-value=3e+02 Score=26.47 Aligned_cols=54 Identities=6% Similarity=0.123 Sum_probs=28.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHccCChhHHHHHH
Q 004279 514 TVLHSLVEAQESHRAMEIFKQMKT----CG-IPPNAATYNIMIDCCSIIRCFKSASALV 567 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 567 (764)
-|...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345556666777777777666531 12 2233344445555555555555544443
No 443
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=26.90 E-value=8.1e+02 Score=26.29 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=68.1
Q ss_pred CCCHHHH-HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH-CCCCCCHH
Q 004279 541 PPNAATY-NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL---LDYGDFDEALNLLDLVSL-EGIPHDVL 615 (764)
Q Consensus 541 ~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~-~~~~p~~~ 615 (764)
.|+..|+ +.++.-+-..+-.+.|..++..+... .+|+...|..+|..= ..+| +.-+.++++.|.. -| .|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 4666655 34666667778888888888888776 356777777777542 2333 7777888888875 34 6777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004279 616 LYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
.|...+.--...|..+.+-.++.+...
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 888777777778888877777666553
No 444
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.25 E-value=1.3e+02 Score=21.57 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=25.9
Q ss_pred HHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhh-----CCCChhHHHHH
Q 004279 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA-----RSPDPLFVMET 109 (764)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~ 109 (764)
.+-..|++-+|.++++.+......+....+..+|+.+. +.|+...|..+
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 35567788888888888775432233334445544332 23555544443
No 445
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.89 E-value=2.1e+02 Score=21.13 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004279 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 133 (764)
.+.|..++..+.... ..++..||++...+.
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~ 42 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLD 42 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHH
Confidence 444555555544332 345555555554443
No 446
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.89 E-value=7.5e+02 Score=25.55 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred HHHHHhccCcHHHHHHHHHhcCCCCChhhHHHH
Q 004279 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515 (764)
Q Consensus 483 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 515 (764)
|...+-.+|++++|..++.+. .+.||.+|
T Consensus 137 L~~ike~~Gdi~~Aa~il~el----~VETygsm 165 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCEL----QVETYGSM 165 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----chhhhhhh
Confidence 666778899999999998766 34455544
No 447
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.88 E-value=7e+02 Score=25.19 Aligned_cols=135 Identities=9% Similarity=0.004 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc---cCCHHHHHHHH
Q 004279 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR---LRDLKSAYETL 250 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 250 (764)
.+.-+.+|++..+..+ -+.......|..+.+..+.+...+.|+.+....+.+...|...++.... .-.++....+|
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3455666777666532 2444555677777777777888888888887777777877777776544 23466666666
Q ss_pred HHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004279 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 251 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 323 (764)
.+..+.-..-.. +. .................+.-+..-+.+.|..+.|+.+++-+.+.+
T Consensus 126 ~~~l~~L~~~~~-------~~-------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRS-------GR-------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhc-------cc-------cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 665542100000 00 000000000011111344444555566788888888888777765
No 448
>PRK09857 putative transposase; Provisional
Probab=25.69 E-value=4.7e+02 Score=25.99 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=28.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004279 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648 (764)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 648 (764)
.+.|+.++..++++.+.+. .++......++..-+...|.-+++.++..+|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445555555555544433 222223333444555555555556666666666665544
No 449
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.61 E-value=1.5e+02 Score=24.28 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=33.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004279 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
++......+..-.|.++++.+.+.+..++..|.+..|..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444455556678888888888777778888887888888777654
No 450
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.60 E-value=9.2e+02 Score=27.34 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHCCCCCc---HHHHHHHHHHHhccCcHHHHHHHHHhcCCCCChh----------hHHHHHHHHHHcCC
Q 004279 458 AKRINAIEMDMARNNIQHS---HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----------TYNTVLHSLVEAQE 524 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~li~~~~~~~~ 524 (764)
+++...++..|...--.|+ ..+...++-.|....+++...++.+....-||.. .|.-.++-=-+-|+
T Consensus 179 G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 179 GDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred cHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Confidence 4555666667766544444 3445567777888888888888887775556432 23333333334467
Q ss_pred hhHHHHHHHHHHhCC--CCCCHHH-----HHHHH--HHHHccCChhHHHHHHHHHHH
Q 004279 525 SHRAMEIFKQMKTCG--IPPNAAT-----YNIMI--DCCSIIRCFKSASALVSMMVR 572 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g--~~p~~~t-----~~~ll--~~~~~~~~~~~a~~~~~~~~~ 572 (764)
-++|+...-.|.+.. +.||... |.-+. +.|...+..+.|...|++.-+
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 778888777766542 5666543 22111 223344555666777766655
No 451
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.46 E-value=9.8e+02 Score=27.68 Aligned_cols=100 Identities=14% Similarity=-0.049 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.++..+.++.+.++.++..+......+.. .-.|++..|+.++++....+- +..+...+-.. ..
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~--~~It~~~V~~~-LG------------ 242 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSA--NEVTETAVSGM-LG------------ 242 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcc--CCcCHHHHHHH-hC------------
Confidence 44556666666555565545444444433 336888888888777554321 12222222111 11
Q ss_pred HHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhccc
Q 004279 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 261 (764)
..|...+..++..+ ..++...++.+++++...|....
T Consensus 243 ------~~d~~~i~~ll~aL-~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 243 ------ALDQTYMVRLLDAL-AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred ------CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHH
Confidence 12222333344433 44788888888888887776554
No 452
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=25.39 E-value=3.7e+02 Score=21.87 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=35.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004279 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (764)
..++|..+.+-+...+- -....-.+-+..+.+.|++++| +..- .....||...|.+| +-.+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~-~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLP-QCHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHH-TTS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhc-ccCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 44566666666655542 1222222233345556666666 1111 11234666665544 2335666666666666
Q ss_pred HHHHCC
Q 004279 604 LVSLEG 609 (764)
Q Consensus 604 ~m~~~~ 609 (764)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555443
No 453
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.29 E-value=9.7e+02 Score=26.63 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=11.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 004279 298 DVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 298 ~li~~~~~~g~~~~a~~~~~~m~ 320 (764)
..|++++..|.... ...+....
T Consensus 465 ~~LkaLGN~g~~~~-i~~l~~~l 486 (574)
T smart00638 465 LYLKALGNAGHPSS-IKVLEPYL 486 (574)
T ss_pred eHHHhhhccCChhH-HHHHHHhc
Confidence 45677777776543 33344333
No 454
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=25.26 E-value=3.8e+02 Score=21.85 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=47.2
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004279 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
.....++|..+.+.+...+. ....+--.-+..+.+.|+|++| +..-. ....||...|-+| +-.+.|-.+++.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~---~~~~pdL~p~~AL--~a~klGL~~~~e 89 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQ---CHCYPDLEPWAAL--CAWKLGLASALE 89 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHT---TS--GGGHHHHHH--HHHHCT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcc---cCCCccHHHHHHH--HHHhhccHHHHH
Confidence 34456778888888777753 2333333445567788888888 22222 2335777777665 345677777887
Q ss_pred HHHHHHHhcC
Q 004279 179 LCLDLMDSRM 188 (764)
Q Consensus 179 ~~~~~m~~~g 188 (764)
..+.++...|
T Consensus 90 ~~l~rla~~g 99 (116)
T PF09477_consen 90 SRLTRLASSG 99 (116)
T ss_dssp HHHHHHCT-S
T ss_pred HHHHHHHhCC
Confidence 7777776654
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.99 E-value=5.4e+02 Score=25.57 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004279 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 529 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
.++|+.|.+.++.|.-..|.-+.-.+.+.=.+.+...+|+.+...... |..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHH
Confidence 467777777788888777776666666666777788888777653222 555555554
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.78 E-value=2.7e+02 Score=26.87 Aligned_cols=55 Identities=13% Similarity=-0.096 Sum_probs=31.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhc----C-CCCChhhHHHHHHHHHhccChhHHHHHH
Q 004279 162 NSFLGACAKLHSMVHANLCLDLMDSR----M-VGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
-.|..-|.+.|++++|.++|+.+... | ..+...+...++.++...|+.+....+-
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34555666677777777777666321 1 2234445555666666667766655543
No 457
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=24.73 E-value=1e+03 Score=27.45 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHH
Q 004279 560 FKSASALVSMMV-RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG---I----------PHDVLLYNTILKKAC 625 (764)
Q Consensus 560 ~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~----------~p~~~~~~~li~~~~ 625 (764)
.++..+.++.+. +.|+..+......+.. ...|++.+|+.++++....+ + ..|...+..++..+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 345666666554 4577766666554443 34689999999988865432 1 12222334444433
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC
Q 004279 626 EKGRIDVIEFIIEQMHQNKVQPD 648 (764)
Q Consensus 626 ~~g~~~~a~~~~~~m~~~~~~p~ 648 (764)
..|+...++.+++++...|+.+.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 44777777777777777666443
No 458
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=24.61 E-value=5.3e+02 Score=24.78 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------------CCC---------C---CH
Q 004279 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN-------------KVQ---------P---DP 649 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------~~~---------p---~~ 649 (764)
+++|..+++.-.. -..++.+...+.-++...|+...+..+++.+... +.. + +.
T Consensus 115 i~kA~~~L~~~~~--~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLD--NIQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHG--CTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhcc--ccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 4556666655432 2456666666666677777777778777777642 000 0 11
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 004279 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 650 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
.+-...+-++.+.++.+.+..+.+.+....
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~qr 222 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQR 222 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 222222344555599999999999887654
No 459
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.53 E-value=9.4e+02 Score=26.23 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhccChhHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV-GKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
.++...++....++.|+..+......++. .-.|++..|+..++.+...+- .....|...+-..+ .
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~ll-g----------- 254 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQML-G----------- 254 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHH-C-----------
Confidence 34445555555555555555444444443 234677777777766643211 11122322222111 1
Q ss_pred HHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..+....-.|+.+. ..|+.+.|+.+++++...|..|..
T Consensus 255 -------~~~~~~if~L~~ai-~~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 255 -------LVDSSVIIEFVEYI-IHRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred -------CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 12222233333333 348999999999999998887764
No 460
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.34 E-value=7.1e+02 Score=24.75 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004279 515 VLHSLVEA---QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR-----CFKSASALVSMMVRDGFYPQTMTYTALI 586 (764)
Q Consensus 515 li~~~~~~---~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~p~~~~~~~li 586 (764)
+|+++.++ .+.+.|+-.+-+|.+.|-.|..+.=..++.++-..| -...|...++....-|++=-.......+
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~av 208 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAA 208 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004279 587 KILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~ 607 (764)
--++.+-+...+...+....+
T Consensus 209 iyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 209 IYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHcCCCchHHHHHHHHHHH
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.27 E-value=8.2e+02 Score=25.45 Aligned_cols=173 Identities=11% Similarity=0.114 Sum_probs=81.6
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCCH
Q 004279 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS 309 (764)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 309 (764)
+.-+...|..+|+++.|++.+.+...- ... ...+ ...|-.+|..-.-.|+|
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs---------------------------~khv-Inm~ln~i~VSI~~~nw 203 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDY-CTS---------------------------AKHV-INMCLNLILVSIYMGNW 203 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhh-hcc---------------------------hHHH-HHHHHHHHHHHHhhcch
Confidence 444556677777777777777774431 000 0111 13555666666666777
Q ss_pred HHHHHHHHHHHHC---------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCchhHHHHHHHHHH
Q 004279 310 GLAEQLMLQMQSL---------GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN------LKPQDSTIATLSVECS 374 (764)
Q Consensus 310 ~~a~~~~~~m~~~---------g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~ 374 (764)
........+..+. -+.+-..++..+...+. +++..|.+.|-.....- +.|...+....+.+++
T Consensus 204 ~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALA 281 (466)
T KOG0686|consen 204 GHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALA 281 (466)
T ss_pred hhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhc
Confidence 6666555555432 12222333333333332 35555555443332211 2233333333333333
Q ss_pred hcCCHHHHHH-----HHHHHhhCCCCcchHHHHHHHhcCCCHHHHHHHHHHHhhc------cCCCHHhHHHHH
Q 004279 375 KALELDLAEA-----LLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK------LRPDIRTYELLF 436 (764)
Q Consensus 375 ~~g~~~~A~~-----~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~p~~~t~~~ll 436 (764)
.-++-+--.. .|+...+. .+..+..+-.-| .+++...++++++++.. +.|.+.+.-.+|
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel-~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLEL-EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhc-ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 3333222211 12222222 444444444433 36788888888888762 445555555444
No 462
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.18 E-value=1.6e+02 Score=24.22 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004279 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
++......+.+-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444455566677777766655555555445566666665443
No 463
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=24.18 E-value=2.3e+02 Score=29.70 Aligned_cols=202 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHh------------cCCCCCh
Q 004279 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS------------RMVGKNE 193 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~g~~p~~ 193 (764)
+.+..-+...|.++.|.++++ ++-|+.-=...-..++..|....-+-.+..-+--+.. .+.+.-.
T Consensus 122 S~laadhvAAGsFetAm~LLn---rQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~ 198 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLN---RQIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIP 198 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHH---HHC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB--
T ss_pred CCcHHHHHHhCCHHHHHHHHH---HHhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCc
Q ss_pred hhHHHHHH------HHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhccc
Q 004279 194 VTYTELLK------LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267 (764)
Q Consensus 194 ~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 267 (764)
.+++.|.. -+...|++.+|...|..+ .+...+.......+.+++.+++....+
T Consensus 199 ~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~i---------L~~i~l~vv~~~~E~~e~~eli~icrE------------ 257 (422)
T PF06957_consen 199 LSLSSLEERLKEGYKLFTAGKFEEAIEIFRSI---------LHSIPLLVVESREEEDEAKELIEICRE------------ 257 (422)
T ss_dssp --HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH---------HHHHHC--BSSCHHHHHHHHHHHHHHH------------
T ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---------HHHhheeeecCHHHHHHHHHHHHHHHH------------
Q ss_pred ccccccccccCCCccCCcccchhhhHhhHHHHHHHHHcc------CCHHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHH
Q 004279 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT------QNSGLAEQLMLQMQSLGLQPSSH--TYDGFIRAIV 339 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~------g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~ 339 (764)
+.....|..-.+. .+..+..++-.-+..-.++|... ++...|..+.
T Consensus 258 --------------------------Yilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~ 311 (422)
T PF06957_consen 258 --------------------------YILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAF 311 (422)
T ss_dssp --------------------------HHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCC
T ss_pred --------------------------HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q ss_pred hcCChhHHHHHHHHHHHCCCCCchhHHHHHHHHHHhcC
Q 004279 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377 (764)
Q Consensus 340 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 377 (764)
+.+++..|-.+-+++++.+..++...-..-+-.-+...
T Consensus 312 K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~ 349 (422)
T PF06957_consen 312 KLKNFITAASFARRLLELNPSPEVAEQARKILQACERN 349 (422)
T ss_dssp CTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS
T ss_pred HhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
No 464
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=24.09 E-value=3.3e+02 Score=22.68 Aligned_cols=20 Identities=5% Similarity=-0.002 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhcCChHHHHH
Q 004279 651 TCHFVFSGYVNCGFHNSAME 670 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~ 670 (764)
++..|-.++...|++++++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHH
Confidence 33445557777777776653
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.07 E-value=8.6e+02 Score=25.62 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004279 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 628 (764)
++.+.|+.++..|.+.|..|....-..++.++-.-|
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 566666666666666666555444444444443333
No 466
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.64 E-value=9.8e+02 Score=26.13 Aligned_cols=100 Identities=9% Similarity=-0.064 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 004279 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
++..+.+..+.++.|+..+......++.. -.|+...|+.++++....| ....|...+-..+
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~--~~~It~~~V~~~l--------------- 241 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYG--NGKVLIADVKTML--------------- 241 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHH---------------
Confidence 33344444444445555444444444332 2477777777776655433 1223332222211
Q ss_pred HHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
...+......++.+.. .++.+.+..+++.+.+.|..+..
T Consensus 242 ----g~~~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 242 ----GTIEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred ----CCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 1233333344444443 48889999999999998877754
No 467
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.60 E-value=1.1e+03 Score=26.58 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=22.6
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
...++.+.. .|+...++.+++++.+.|..+..
T Consensus 254 i~~LldaL~-~~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 254 VFRLIDALA-QGDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 334444443 47889999999999987777654
No 468
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.22 E-value=4.6e+02 Score=22.70 Aligned_cols=20 Identities=20% Similarity=0.031 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHCCCCCCH
Q 004279 560 FKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 560 ~~~a~~~~~~~~~~g~~p~~ 579 (764)
.-.|.++++.+.+.+...+.
T Consensus 33 h~sa~eI~~~l~~~~~~i~~ 52 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGL 52 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCH
Confidence 34444555554444433333
No 469
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.20 E-value=1e+03 Score=26.04 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=23.6
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
....++.+. ..++.+.|+.+++.+...|..|..
T Consensus 244 ~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 244 RLRGIAAAL-AQGDAAEALSGAAQLYRDGFAART 276 (504)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 344444444 558999999999999988766553
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.18 E-value=3.6e+02 Score=24.13 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=19.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004279 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342 (764)
Q Consensus 300 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 342 (764)
+..+...+..-.|.++++.+.+.+..++..|..-.|..+...|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333344455555555555544444444333344444333
No 471
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.87 E-value=1.2e+03 Score=26.71 Aligned_cols=101 Identities=15% Similarity=0.008 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 004279 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.++....+..+.++.|+..+......++... .|++..|+.+++.+...| -...+...+-..+.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g--~g~It~e~V~~lLG------------- 242 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALG--SGKVAENDVRQMIG------------- 242 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHHc-------------
Confidence 4555566666666666665655555555433 588888888887766533 12223222222111
Q ss_pred HHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 218 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..+......|+.++. .++...++.+++.+.+.|..+..
T Consensus 243 ------~~d~~~If~LldAL~-~~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 243 ------AVDKQYLYELLTGII-NQDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred ------ccCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHHH
Confidence 112223334444444 48899999999999988877654
No 472
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=22.66 E-value=80 Score=22.68 Aligned_cols=23 Identities=22% Similarity=-0.070 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCh
Q 004279 136 GYLEEASNLIYFLGERYGIYPIL 158 (764)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~ 158 (764)
-+++.|...|.++.....++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 47788888888876656666654
No 473
>PRK10941 hypothetical protein; Provisional
Probab=22.40 E-value=7.4e+02 Score=24.26 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=49.9
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004279 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 255 (764)
+.+-.+|.+.++++.|.++.+.+..-.|.|+.-+.--.-.|.+.|.+..|..=++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34555778899999999999999888888888888888889999999999988888876
No 474
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.36 E-value=1.5e+02 Score=24.57 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 004279 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
.++......+..-.|.++++.|.+.+...+..|.+..|..+.+.|-..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 455555666667778888898888887888888777777777777544
No 475
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.24 E-value=7.2e+02 Score=24.06 Aligned_cols=73 Identities=10% Similarity=-0.053 Sum_probs=43.4
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccchhcccccccccccccCCCccCCcccchhhhHhhHHHHHHHHHccCC
Q 004279 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 308 (764)
+-+.|...|...+++.+..+++.++.+.--..+.. .+..........|..=|..|....+
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe--------------------dD~kKGtQLLEiYAlEIQmYT~qKn 206 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE--------------------DDQKKGTQLLEIYALEIQMYTEQKN 206 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc--------------------hhhhccchhhhhHhhHhhhhhhhcc
Confidence 33456777888888888888888876532211110 0000111112467777788888777
Q ss_pred HHHHHHHHHHHHH
Q 004279 309 SGLAEQLMLQMQS 321 (764)
Q Consensus 309 ~~~a~~~~~~m~~ 321 (764)
-.+...+|++...
T Consensus 207 NKkLK~lYeqalh 219 (440)
T KOG1464|consen 207 NKKLKALYEQALH 219 (440)
T ss_pred cHHHHHHHHHHHH
Confidence 7777777877654
No 476
>PRK09857 putative transposase; Provisional
Probab=22.01 E-value=5.6e+02 Score=25.48 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=43.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004279 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613 (764)
Q Consensus 547 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 613 (764)
+..++......++.++-.++++.+.+. .+.......++..-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555667766677777766655 223333444566667777777778888888888887655
No 477
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=21.40 E-value=8.7e+02 Score=24.67 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=42.6
Q ss_pred hHHHHHHHHHccCCHHH-HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchhHH
Q 004279 295 SFSDVIHACGRTQNSGL-AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 295 ~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 366 (764)
...+|..++-...-.+. +..+++..... ||......++++.+...........+..+.+.....+..+.
T Consensus 199 vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~L 268 (340)
T PF12069_consen 199 VLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVL 268 (340)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHH
Confidence 45555555544443333 33444444443 89999999999998877777666667777766544444443
No 478
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.34 E-value=4.9e+02 Score=21.91 Aligned_cols=58 Identities=21% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 004279 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN-TILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~ 639 (764)
..+-.++..++.-.|..++|.++++.. +..++-...| -++..|.++.+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~F---kWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKF---KWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455566666666667776666543 2222333333 366666666666555554443
No 479
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=21.30 E-value=9.5e+02 Score=25.09 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=33.2
Q ss_pred hHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004279 295 SFSDVIHACGR---TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342 (764)
Q Consensus 295 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 342 (764)
.+..+|+++.+ ..+++.|+-++.+|.+.|-.|-...-..++-+.-..|
T Consensus 248 ~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 248 AHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred hHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 44456666654 5788999999999999987666665555555555444
No 480
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.24 E-value=6.5e+02 Score=23.13 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=12.6
Q ss_pred HhcCChHHHHHHHHHHHH
Q 004279 660 VNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~ 677 (764)
.+.|+++.|.+.++-|..
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456778888877776653
No 481
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=20.96 E-value=9.3e+02 Score=24.84 Aligned_cols=181 Identities=12% Similarity=0.069 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhhccCCCCcchHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH---
Q 004279 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL--- 132 (764)
Q Consensus 56 ~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--- 132 (764)
+.....+...++++..+.+++. .|-...++..+-..|.+.|+...|.+++++.+-.- ..++......+
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~ 84 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSN 84 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcc
Confidence 3344455566677776666533 24566778888888889999999888888765320 00111111000
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHH---HHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hccC
Q 004279 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNS---FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV-WQKN 208 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~ 208 (764)
...|.. ++ .....-|...|-+ -|..+.+.|-+..|+++.+.+..-.+.-|.......|..|+ +.++
T Consensus 85 ~~~g~~--------rL--~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 85 LTSGNC--------RL--DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred cccCcc--------cc--CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 001110 00 0111123333433 34567788888888888888888665556666666777664 5677
Q ss_pred hhHHHHHHHHHHccCC------CCHHhHHHHHHHhhccCC--------------HHHHHHHHHHHHH
Q 004279 209 LSAVHEIWEDYIKHYS------LSIFSLRKFVWSFTRLRD--------------LKSAYETLQHMVA 255 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~--------------~~~A~~~~~~m~~ 255 (764)
++...++.+....... .....|+..+..+...+. .+.|...+.+...
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 7777777776554211 113455555544443332 2666666666554
No 482
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.95 E-value=1.3e+03 Score=26.45 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004279 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..+...|..+.-.|++++|-...-.|... +..-|..-+..+...++...... .++......+...|..+|-.
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve 464 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVE 464 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccccccchhhc---cCCCCCcccCchHHHHHHHH
Confidence 35556666666667777776666666421 34445555555555444433222 22222222344455555554
Q ss_pred HHh
Q 004279 203 AVW 205 (764)
Q Consensus 203 ~~~ 205 (764)
+..
T Consensus 465 ~L~ 467 (846)
T KOG2066|consen 465 FLA 467 (846)
T ss_pred HHH
Confidence 443
No 483
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.69 E-value=2.2e+02 Score=20.69 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004279 581 TYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
.++.+++.+++-.-+++++..+.+....|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444334444444444444333
No 484
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.62 E-value=4.6e+02 Score=21.20 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=9.7
Q ss_pred HHHHHhccCcHHHHHHHHHhc
Q 004279 483 LLKALGAEGMIRELIQYFCDS 503 (764)
Q Consensus 483 l~~~~~~~g~~~~a~~~~~~~ 503 (764)
++..|...++.++|...+.+.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444444445555555555444
No 485
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.56 E-value=7.5e+02 Score=23.58 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=62.1
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHcc-------------CCCCHHhHHHHH
Q 004279 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-------------YSLSIFSLRKFV 234 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~li 234 (764)
|.+..+..--.++++-....++.-+......++ +...||..+|...++.-..+ ..|.+...-.++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 445555554555555555555555555555444 45678888777777665542 357777777777
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhhcccc
Q 004279 235 WSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 262 (764)
..+ ..+++++|.+++.++-+.|..|.+
T Consensus 247 ~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 247 QAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 655 457899999999999999999987
No 486
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.53 E-value=5.3e+02 Score=25.61 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004279 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
.++|+.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+.+ |+.-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 67888888889999999888887788888888999999999864 33336677766663
No 487
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=20.34 E-value=4.2e+02 Score=20.56 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004279 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (764)
++|+-....|+..|+..|..+++.+.-.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555444444444444444443
No 488
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.25 E-value=2.7e+02 Score=20.22 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=28.0
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004279 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
|..+.++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445566666666666666666666776666663 345555555554443
No 489
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.16 E-value=9.9e+02 Score=24.85 Aligned_cols=123 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChh--hhHHHHHHHhcc--CCHHHHHHHHHHHHhcCCC--CChhhHHHHHHH
Q 004279 129 MQALCKGGYLEEASNLIYFLGERYGIYPILP--VYNSFLGACAKL--HSMVHANLCLDLMDSRMVG--KNEVTYTELLKL 202 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~ 202 (764)
+..+.+.+++..|.++|+.+.++ ++++.. .+..+..+|... -++.+|.+.|+........ -....+..++..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~ 215 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEV 215 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Q ss_pred HHhccChhHHHHHHHHHHccCCCCHHhHHHHHHHhhc---cCCHHHHHHHHHHHHH
Q 004279 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR---LRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 255 (764)
......+.........-.+.. .......|+..-.+ .|+++.|...+=++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~--~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 216 LKALESILSALEDKKQRQKKL--YYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHHhhccchhhhhcccccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 490
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.16 E-value=2.2e+02 Score=23.53 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=28.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 004279 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 559 (764)
.++..+...+..-.|.++++.|.+.|...+..|.-.-|+.+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555556666677777888888777766666665555555555553
Done!