Query 004280
Match_columns 764
No_of_seqs 139 out of 193
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 20:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2072 Translation initiation 100.0 5E-217 1E-221 1804.4 81.9 740 1-760 1-826 (988)
2 PF01399 PCI: PCI domain; Int 99.0 4.9E-09 1.1E-13 93.9 11.7 74 436-510 32-105 (105)
3 smart00753 PAM PCI/PINT associ 98.9 9.2E-09 2E-13 90.7 10.0 86 441-530 1-86 (88)
4 smart00088 PINT motif in prote 98.9 9.2E-09 2E-13 90.7 10.0 86 441-530 1-86 (88)
5 KOG1498 26S proteasome regulat 97.9 0.00062 1.3E-08 75.5 17.9 211 271-537 209-421 (439)
6 PTZ00121 MAEBL; Provisional 97.7 0.0065 1.4E-07 75.6 23.9 15 375-389 814-828 (2084)
7 KOG2072 Translation initiation 97.5 0.31 6.7E-06 58.8 32.7 42 437-478 451-493 (988)
8 PTZ00121 MAEBL; Provisional 97.3 0.054 1.2E-06 68.0 25.2 18 72-89 431-448 (2084)
9 COG5071 RPN5 26S proteasome re 97.2 0.013 2.8E-07 63.5 16.9 93 440-537 329-421 (439)
10 KOG1497 COP9 signalosome, subu 95.7 0.17 3.7E-06 55.5 13.1 184 268-510 178-362 (399)
11 KOG1029 Endocytic adaptor prot 95.5 2 4.2E-05 51.9 22.0 20 545-564 317-336 (1118)
12 KOG2581 26S proteasome regulat 94.7 7.8 0.00017 44.3 22.7 67 441-507 354-420 (493)
13 KOG1464 COP9 signalosome, subu 92.7 18 0.00039 39.7 20.4 384 21-530 41-429 (440)
14 KOG2753 Uncharacterized conser 91.4 6.9 0.00015 43.6 15.7 261 237-526 51-361 (378)
15 KOG1029 Endocytic adaptor prot 91.1 46 0.001 41.0 23.6 33 554-586 319-353 (1118)
16 KOG0163 Myosin class VI heavy 90.9 23 0.0005 43.3 20.2 24 516-539 864-887 (1259)
17 KOG1144 Translation initiation 90.8 2.1 4.6E-05 51.8 11.9 61 558-618 216-276 (1064)
18 PTZ00266 NIMA-related protein 90.6 3 6.4E-05 52.7 13.6 9 123-131 151-159 (1021)
19 KOG2582 COP9 signalosome, subu 90.2 1.5 3.3E-05 49.1 9.5 68 443-513 296-363 (422)
20 KOG2908 26S proteasome regulat 89.8 39 0.00084 38.1 25.8 231 243-536 127-364 (380)
21 KOG2758 Translation initiation 89.0 42 0.0009 37.7 19.0 60 454-514 339-398 (432)
22 PF10075 PCI_Csn8: COP9 signal 88.7 1.1 2.4E-05 43.3 6.5 52 436-488 69-120 (143)
23 PTZ00266 NIMA-related protein 88.3 5.3 0.00012 50.6 13.5 8 181-188 129-136 (1021)
24 KOG4364 Chromatin assembly fac 87.4 23 0.0005 42.6 16.9 14 749-762 361-374 (811)
25 KOG0163 Myosin class VI heavy 86.1 28 0.00061 42.6 16.7 15 281-295 591-605 (1259)
26 KOG1076 Translation initiation 82.9 1.3E+02 0.0027 37.1 24.8 256 163-510 482-763 (843)
27 KOG1144 Translation initiation 77.3 9.8 0.00021 46.4 9.0 62 564-628 216-277 (1064)
28 KOG4661 Hsp27-ERE-TATA-binding 74.9 36 0.00079 40.3 12.4 24 552-575 596-619 (940)
29 KOG4364 Chromatin assembly fac 74.2 1.1E+02 0.0024 37.2 16.3 14 554-567 261-274 (811)
30 KOG2891 Surface glycoprotein [ 73.9 53 0.0012 35.9 12.5 25 370-394 171-195 (445)
31 KOG3054 Uncharacterized conser 69.4 43 0.00093 36.0 10.5 35 598-632 139-173 (299)
32 KOG2412 Nuclear-export-signal 66.0 92 0.002 37.0 13.2 27 429-455 80-106 (591)
33 KOG2412 Nuclear-export-signal 64.9 98 0.0021 36.8 13.1 17 450-466 133-149 (591)
34 COG5159 RPN6 26S proteasome re 63.6 35 0.00076 37.8 8.7 128 374-514 262-392 (421)
35 KOG0687 26S proteasome regulat 60.5 1.4E+02 0.0031 33.7 12.8 69 437-510 294-362 (393)
36 KOG3654 Uncharacterized CH dom 60.0 53 0.0012 38.5 9.7 45 564-608 390-434 (708)
37 KOG1463 26S proteasome regulat 59.7 73 0.0016 36.1 10.5 126 374-513 265-393 (411)
38 PRK00409 recombination and DNA 58.5 2.9E+02 0.0064 34.6 16.7 37 550-586 518-554 (782)
39 KOG2002 TPR-containing nuclear 58.4 66 0.0014 40.6 10.8 26 49-75 164-189 (1018)
40 KOG3462 Predicted membrane pro 56.8 27 0.00058 32.3 5.5 61 271-331 30-91 (105)
41 PF07946 DUF1682: Protein of u 55.2 64 0.0014 35.8 9.4 33 695-727 256-288 (321)
42 KOG3054 Uncharacterized conser 54.0 66 0.0014 34.7 8.6 18 743-760 158-175 (299)
43 PRK13454 F0F1 ATP synthase sub 53.0 2.6E+02 0.0057 28.4 18.4 70 494-564 10-81 (181)
44 PF07946 DUF1682: Protein of u 50.2 64 0.0014 35.8 8.4 25 451-475 181-205 (321)
45 KOG3634 Troponin [Cytoskeleton 45.5 1.1E+02 0.0023 34.4 8.9 32 689-720 85-116 (361)
46 KOG4661 Hsp27-ERE-TATA-binding 44.9 1.3E+02 0.0029 35.9 9.9 11 373-383 417-427 (940)
47 PF13170 DUF4003: Protein of u 42.9 3.2E+02 0.0069 30.1 12.3 140 273-423 81-249 (297)
48 TIGR01069 mutS2 MutS2 family p 41.5 6.3E+02 0.014 31.7 15.8 33 550-582 513-545 (771)
49 KOG4848 Extracellular matrix-a 41.5 4.4E+02 0.0096 27.6 13.3 40 674-713 158-197 (225)
50 KOG2891 Surface glycoprotein [ 41.3 5.1E+02 0.011 28.6 13.0 16 175-190 9-24 (445)
51 PRK00247 putative inner membra 39.3 5.1E+02 0.011 30.3 13.6 13 474-486 141-153 (429)
52 PRK00247 putative inner membra 39.1 3.2E+02 0.007 31.9 11.9 26 649-674 276-301 (429)
53 KOG0686 COP9 signalosome, subu 37.7 7.3E+02 0.016 29.1 18.8 76 436-512 337-412 (466)
54 PF14561 TPR_20: Tetratricopep 35.0 1E+02 0.0022 27.8 5.8 49 7-57 22-71 (90)
55 PF05262 Borrelia_P83: Borreli 34.9 8.5E+02 0.018 29.0 17.1 35 437-472 104-138 (489)
56 KOG2688 Transcription-associat 34.7 76 0.0017 36.4 6.0 69 446-514 312-389 (394)
57 PRK09550 mtnK methylthioribose 34.2 1.7E+02 0.0037 33.7 8.8 121 126-264 264-397 (401)
58 PF11817 Foie-gras_1: Foie gra 34.2 65 0.0014 34.1 5.1 49 10-58 181-229 (247)
59 KOG4414 COP9 signalosome, subu 33.0 77 0.0017 31.8 4.9 46 441-487 109-154 (197)
60 PRK00409 recombination and DNA 32.5 9E+02 0.019 30.4 15.2 11 231-241 232-242 (782)
61 PF15236 CCDC66: Coiled-coil d 31.9 5.6E+02 0.012 26.0 14.8 6 535-540 40-45 (157)
62 TIGR01069 mutS2 MutS2 family p 31.7 9.9E+02 0.022 30.0 15.3 14 230-243 226-239 (771)
63 COG4857 Predicted kinase [Gene 31.6 3.2E+02 0.007 30.7 9.8 119 127-264 270-405 (408)
64 CHL00119 atpD ATP synthase CF1 31.6 4.1E+02 0.0089 26.9 10.2 150 374-533 13-183 (184)
65 KOG2002 TPR-containing nuclear 31.5 4.8E+02 0.01 33.5 12.3 8 158-165 436-443 (1018)
66 PF13428 TPR_14: Tetratricopep 31.3 72 0.0016 24.3 3.7 30 7-36 1-30 (44)
67 PF10187 Nefa_Nip30_N: N-termi 31.3 1.6E+02 0.0035 27.6 6.6 61 658-719 39-99 (102)
68 PF14559 TPR_19: Tetratricopep 31.1 61 0.0013 26.2 3.5 56 17-78 1-56 (68)
69 PF11728 DUF939_C: DUF939 C-te 29.7 5.9E+02 0.013 25.6 14.6 89 221-322 62-151 (167)
70 TIGR02838 spore_V_AC stage V s 28.2 1.1E+02 0.0024 30.4 5.1 56 266-329 10-67 (141)
71 PF13076 DUF3940: Protein of u 28.0 60 0.0013 25.3 2.6 24 374-400 3-26 (38)
72 PF03669 UPF0139: Uncharacteri 26.6 94 0.002 29.2 4.2 59 272-330 30-89 (103)
73 TIGR01767 MTRK 5-methylthiorib 26.2 4.1E+02 0.009 30.4 9.9 120 127-264 234-368 (370)
74 CHL00019 atpF ATP synthase CF0 24.3 7.5E+02 0.016 25.0 18.4 48 515-562 24-72 (184)
75 COG3124 Uncharacterized protei 24.0 2.5E+02 0.0054 28.7 6.7 56 231-286 116-179 (193)
76 COG5187 RPN7 26S proteasome re 23.4 2E+02 0.0044 32.1 6.5 73 436-509 303-375 (412)
77 KOG1150 Predicted molecular ch 23.4 8.6E+02 0.019 25.9 10.7 82 680-761 111-204 (250)
78 TIGR03504 FimV_Cterm FimV C-te 22.4 1.1E+02 0.0025 24.3 3.3 26 11-36 3-28 (44)
79 COG3556 Predicted membrane pro 22.1 1E+02 0.0022 30.4 3.5 35 276-333 56-97 (150)
80 PRK13436 F0F1 ATP synthase sub 22.0 8.3E+02 0.018 24.7 10.9 148 372-530 10-178 (179)
81 KOG0579 Ste20-like serine/thre 21.7 1.7E+03 0.036 28.1 20.6 50 656-705 842-893 (1187)
82 PF05262 Borrelia_P83: Borreli 21.4 1.4E+03 0.031 27.2 13.3 10 386-395 53-62 (489)
83 PF12128 DUF3584: Protein of u 20.2 2.1E+03 0.045 28.6 29.7 54 480-535 568-622 (1201)
No 1
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-217 Score=1804.35 Aligned_cols=740 Identities=50% Similarity=0.782 Sum_probs=700.3
Q ss_pred CCC-CCChhhHHHhHHHHHhcCChHHHHHHHHHHHhcccccchhchHHHHHHHHHHHHhhcccccchhhhhHHHHHhhhc
Q 004280 1 MST-YAKPEAALNQAEALINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDMRRGKFAKDGLIQYRIVCQQ 79 (764)
Q Consensus 1 M~~-~~kPEnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~~~lE~Im~~~ieLCVel~kg~~aKdgL~QYk~~~Q~ 79 (764)
||+ |+|||||||||+|||+||++++|||+|||+|++||+|+|+++||||||+|++|||+|+||++||||||||||+||+
T Consensus 1 Ma~y~~kPENALKRAdElI~VGkkq~ALqsLhd~i~~kr~r~~q~~~EpIMfKyleLCVdLkKg~lAKdGL~QYk~~~Qq 80 (988)
T KOG2072|consen 1 MAPYFQKPENALKRADELIEVGKKQDALQSLHDTITAKRHRWWQTVLEPIMFKYLELCVDLKKGHLAKDGLFQYKNLCQQ 80 (988)
T ss_pred CCCCCCCcHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 675 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCChhHHHHHhhcCccccCcccccccchHHHHHHHHHH
Q 004280 80 VNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYR 159 (764)
Q Consensus 80 ~nv~SLe~Vir~fl~lae~K~~~a~~ka~~~~~~~~~dDLE~~~tPE~lLLsavs~e~~~drtdr~~vtPwlkFLWEsYR 159 (764)
+||.|||+||+|||++|++|+++||.+|++++.++++||||++.||||||||+|||++++|||||++|||||||||||||
T Consensus 81 vnv~SlE~VvrhflklAe~kte~Aq~qad~l~~ve~vdDLe~~~tPEslllSvVsGe~sqdR~DR~lltPWlkFLWeSYR 160 (988)
T KOG2072|consen 81 VNVKSLENVVRHFLKLAEEKTEAAQEQADELQKVEEVDDLEAGVTPESLLLSVVSGEDSQDRSDRELLTPWLKFLWESYR 160 (988)
T ss_pred hchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCChHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCChhHHHHHHHHHHHhHH
Q 004280 160 TVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLK 239 (764)
Q Consensus 160 ~vLdiLRnNskLE~lY~~ta~~Af~FClkY~RktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~ 239 (764)
+||||||||++||.+||+||++||+||+||+||||||||||+||+||++++|++++++.||||||||+|+||||||.||+
T Consensus 161 ~vLdlLRNNa~lE~lY~~ia~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~~v~Ln~~Etlql~LDtRf~QLd 240 (988)
T KOG2072|consen 161 TVLDLLRNNARLEALYHDIARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQSTRVDLNDPETLQLYLDTRFQQLD 240 (988)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCHHHHHHH
Q 004280 240 VATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLI 319 (764)
Q Consensus 240 ~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~ 319 (764)
|||+||||||||||||||||||++||+||||++|+|||+||++|||+|||+||||+||++||.|+++++||+|++|++.|
T Consensus 241 vAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~K~~Tqde~q~~ 320 (988)
T KOG2072|consen 241 VAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMNKNLTQDELQRM 320 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcCC-CCCcchhhhhhhh-HhHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCCcccccHHHHHH
Q 004280 320 ASSVVLAALLVVPYD-RSRSASHLELENE-KDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDL 397 (764)
Q Consensus 320 AS~vlLAaLsIP~~~-~~~~~~~~~~d~~-~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~vl~~a~~~v~~L 397 (764)
||+|||||||||+++ ++.++..++.|+. ++|+.|||+||||+.+ |||.+||+++++.||+++|+++|++|
T Consensus 321 as~VlLaaLSIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L~~~--------PTR~~ll~e~v~~gV~~~v~qe~kdL 392 (988)
T KOG2072|consen 321 ASRVLLAALSIPIPDARSDSARLIEIEDIGKEKNLRLANLLGLPAP--------PTRKGLLKEAVREGVLSKVDQEVKDL 392 (988)
T ss_pred HHHHHHHHhcCCCCCcccccccccccccchhhHHHHHHHHhCCCCC--------ccHHHHHHHHHHhccHhhhhHHHHHH
Confidence 999999999999764 4444555565554 9999999999999977 99999999999999999999999999
Q ss_pred HHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCC
Q 004280 398 YNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFF 477 (764)
Q Consensus 398 y~lLE~~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~ 477 (764)
|+|||++||||+||++|+|||++|++ .|+.+|||+||++||++|+|+|+||+|+||++++|++|+||+
T Consensus 393 Y~iLEveF~PL~l~k~lq~ll~~ls~------------~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~ 460 (988)
T KOG2072|consen 393 YNILEVEFHPLKLCKKLQPLLDKLSE------------SPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFF 460 (988)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHc------------CCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 99999999999999999999999997 477899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC----------------CCchhHhhHHHHHHHHHHHHHhhcCCchh
Q 004280 478 DFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG----------------LESDGLRDHLTIFAQSLNKVRALIYPPAN 541 (764)
Q Consensus 478 ~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~----------------~~s~~ir~qL~~la~~L~~~~~~i~p~~~ 541 (764)
++++||++||+|+++|+|+|+|||.+|||+||+|. ++|+.||+||+.|+.+|..++.++||...
T Consensus 461 ~~~~lEk~~v~a~k~~~v~iriDH~~~~v~FgsDl~~s~~~~~~eg~~lqs~~sE~ir~~L~~m~~~L~~~~e~~dp~~~ 540 (988)
T KOG2072|consen 461 SAFELEKLLVEAAKHNDVSIRIDHESNSVSFGSDLFLSKEEDEPEGPELQSMPSEGIRSQLTAMAESLSKVVEELDPVII 540 (988)
T ss_pred CHHHHHHHHHHHHhccceeEEeccccceeeeccccccccccccCCCchhhcCchHhHHHHHHHHHHHHHHHHHhhChHHH
Confidence 99999999999999999999999999999999864 47889999999999999999999999732
Q ss_pred h---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 542 K---ASKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQ 618 (764)
Q Consensus 542 ~---~~~~~~~~~~~~~~~~~eh~~~l~R~~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~~ae~~Rl~eE~~~Re~e 618 (764)
. ......++.++..+.+.||+++++|+++||+|||.+|+++.+++++++.++...+++.++||++|+.+|..+|+.+
T Consensus 541 r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~ 620 (988)
T KOG2072|consen 541 RNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAK 620 (988)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 5567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------------------------------------HHHHHhhhcCCCCChhhhhH
Q 004280 619 RILREIEERELEEAQALLE-----------------------------------------EAEKRNKKKGGKKPILEGEK 657 (764)
Q Consensus 619 r~~~E~e~~~~~e~~k~~~-----------------------------------------e~~kk~~~~~kk~d~~era~ 657 (764)
|+++|+++|+.+++++.+. ||+.||+.++||+||+|||+
T Consensus 621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 621 RILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKKIDHLERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999888766542 34448899999999999997
Q ss_pred --------------------HHHHHHHHHHHHHHHHhhHhhHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 658 --------------------VLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVEREER 717 (764)
Q Consensus 658 --------------------~~~e~~~~~~~~~ak~~h~~~~~~k~RL~r~~~d~~~f~~~~~~~r~~e~~~~~~e~~~r 717 (764)
++|+.+++++++.++++|+.+|++|+||++|++|+..|+..|...|+++|++...+++++
T Consensus 701 R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~ 780 (988)
T KOG2072|consen 701 RLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKRLSRMYDDRDKFKEHVKGERQSEYEEKLKQFEAR 780 (988)
T ss_pred HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 004280 718 ISLII---KARKQEREAKRKKIFYVRTEEEKIKRLREEEEARKREG 760 (764)
Q Consensus 718 l~~~~---~~r~~er~~~Rr~~~~~~~eEer~~r~~eeee~~~~ee 760 (764)
|+.++ ++|+.+|..+||.+++++.||++..|+.|++.+.+.++
T Consensus 781 leaer~rl~erk~~R~eerk~~~~re~EEEr~Rr~EEe~~ae~~ee 826 (988)
T KOG2072|consen 781 LEAERNRLAERKRARIEERKQAYYREIEEERARREEEEANAERQEE 826 (988)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99544 56666677778888999988888555555554444444
No 2
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=98.98 E-value=4.9e-09 Score=93.87 Aligned_cols=74 Identities=28% Similarity=0.512 Sum_probs=68.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 004280 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (764)
Q Consensus 436 ~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~ 510 (764)
++.+..|++.|...+..+.|.++++.|++|+++.+.+.+. ++..++|.+|++++.+|.|..+|||.+|+|+|+.
T Consensus 32 ~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~-~~~~~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 32 DPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQ-LSEEEVESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhc-cchHHHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 5788999999999999999999999999999999999987 4569999999999999999999999999999974
No 3
>smart00753 PAM PCI/PINT associated module.
Probab=98.90 E-value=9.2e-09 Score=90.75 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHhh
Q 004280 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRD 520 (764)
Q Consensus 441 ~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~~~s~~ir~ 520 (764)
+|++.|.+.+..+.|.++++.|.+|+++.+.+.++++ ..++|.+|++++..|.|..+|||.+|+|+|+.++-.. .+
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~---~~ 76 (88)
T smart00753 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR---SE 76 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh---hh
Confidence 4889999999999999999999999999999998854 4589999999999999999999999999999765542 56
Q ss_pred HHHHHHHHHH
Q 004280 521 HLTIFAQSLN 530 (764)
Q Consensus 521 qL~~la~~L~ 530 (764)
+++.+...|.
T Consensus 77 ~~~~~~~~l~ 86 (88)
T smart00753 77 PLAQFAETLK 86 (88)
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 4
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=98.90 E-value=9.2e-09 Score=90.75 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHhh
Q 004280 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRD 520 (764)
Q Consensus 441 ~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~~~s~~ir~ 520 (764)
+|++.|.+.+..+.|.++++.|.+|+++.+.+.++++ ..++|.+|++++..|.|..+|||.+|+|+|+.++-.. .+
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~---~~ 76 (88)
T smart00088 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR---SE 76 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh---hh
Confidence 4889999999999999999999999999999998854 4589999999999999999999999999999765542 56
Q ss_pred HHHHHHHHHH
Q 004280 521 HLTIFAQSLN 530 (764)
Q Consensus 521 qL~~la~~L~ 530 (764)
+++.+...|.
T Consensus 77 ~~~~~~~~l~ 86 (88)
T smart00088 77 PLAQFAETLK 86 (88)
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 5
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00062 Score=75.46 Aligned_cols=211 Identities=14% Similarity=0.173 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCHHHHHHHHHHHHHHhhccCcCCCCCcchhhhhhhhHhH
Q 004280 271 SLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDR 350 (764)
Q Consensus 271 ~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k 350 (764)
..--.||+-|.++-..-++|+=-+--|.-.|. -|+...++- -...+|.++.+--...|-.+ ...| =
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~-----t~~vk~d~~--kw~~vL~~iv~f~~LAp~dn---eQsd----l 274 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAIYD-----TGNVKEDPE--KWIEVLRSIVSFCVLAPHDN---EQSD----L 274 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHhc-----ccccccChh--hhhhhhhhheeEEeecCCCc---HHHH----H
Confidence 55678999999998777776543322222221 222322111 13344444422222122111 0111 1
Q ss_pred HHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCCcccccHHHHHHHHHH-hhc-CChhhhHHhhHHHHHHHhhhcCCc
Q 004280 351 NLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLL-EHE-FLPLDLASKVQPLLAKISKYGGKL 428 (764)
Q Consensus 351 ~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~vl~~a~~~v~~Ly~lL-E~~-f~Pl~l~~k~~p~l~~l~~~~~~~ 428 (764)
..|+++. +++.++|+-..+++-.+.+-++..+ -+.+-|.-. ..+ |.. +
T Consensus 275 l~~is~d--------KkL~e~p~~k~lLklfv~~EL~rw~--s~~~~yg~~l~~~~~~~--------------~------ 324 (439)
T KOG1498|consen 275 LARISND--------KKLSELPDYKELLKLFVTMELIRWV--SLVESYGDELRTNDFFD--------------G------ 324 (439)
T ss_pred HHHHhcc--------cccccCccHHHHHHHHHhcceeeeh--hHhhhhHHHHhhccccc--------------c------
Confidence 2333322 2445789999999999998777655 444444322 222 111 1
Q ss_pred ccCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEE
Q 004280 429 ASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVF 508 (764)
Q Consensus 429 ~~~~~~~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F 508 (764)
...=+.|+..|+.-|+-.-+.-++.+|+.|++.++..+.. .+..++|++|-+.+..|.+.++||..+|+|.|
T Consensus 325 -------~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLd-l~~ee~E~~LS~lv~t~ti~aKidrpsgII~F 396 (439)
T KOG1498|consen 325 -------GEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLD-LPVEEMEKFLSDLVVTGTIYAKIDRPSGIINF 396 (439)
T ss_pred -------cchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhC-CCHHHHHHHHHHHHhccceEEEecCCCceEEE
Confidence 1334789999999999999999999999999999999987 67899999999999999999999999999999
Q ss_pred ecCCCCchhHhhHHHHHHHHHHHHHhhcC
Q 004280 509 CNLGLESDGLRDHLTIFAQSLNKVRALIY 537 (764)
Q Consensus 509 ~~~~~~s~~ir~qL~~la~~L~~~~~~i~ 537 (764)
....-+ ..+|..+|..+.+.+..+.
T Consensus 397 ~k~K~~----~~~LneW~~nve~L~~ll~ 421 (439)
T KOG1498|consen 397 QKVKDS----NEILNEWASNVEKLLGLLE 421 (439)
T ss_pred EecccH----HHHHHHHHhhHHHHHHHHH
Confidence 965444 4788888888888877664
No 6
>PTZ00121 MAEBL; Provisional
Probab=97.69 E-value=0.0065 Score=75.62 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCccc
Q 004280 375 SSLLSELVSKGVMSC 389 (764)
Q Consensus 375 ~~Ll~~l~~~~vl~~ 389 (764)
.+||+.|....|+++
T Consensus 814 p~lIknL~DCSiySy 828 (2084)
T PTZ00121 814 PGLIKNLFDCSIYSY 828 (2084)
T ss_pred hHhhcCHhhhhHHHh
Confidence 478888887777763
No 7
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.31 Score=58.80 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=27.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH-HhheeehhhhhhccCCCC
Q 004280 437 VQLSRYIPALEKLVTLRVLQQVSE-VYQMMRIESLSQMIPFFD 478 (764)
Q Consensus 437 ~~~~~Y~~~L~~vi~~Rll~qlSq-vY~ti~i~~L~~l~~f~~ 478 (764)
..+.+-++.+.---+-|++.+.+. -|-+|.||+-..-+.|-|
T Consensus 451 ~~l~~La~F~~~~~lEk~~v~a~k~~~v~iriDH~~~~v~Fgs 493 (988)
T KOG2072|consen 451 ERLYKLAPFFSAFELEKLLVEAAKHNDVSIRIDHESNSVSFGS 493 (988)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHhccceeEEeccccceeeecc
Confidence 344455555555556666655554 577899999998888764
No 8
>PTZ00121 MAEBL; Provisional
Probab=97.32 E-value=0.054 Score=68.00 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=12.0
Q ss_pred HHHHhhhccCcCcHHHHH
Q 004280 72 QYRIVCQQVNVTSLEEVI 89 (764)
Q Consensus 72 QYk~~~Q~~nv~SLe~Vi 89 (764)
.|....|+.+..-|+++.
T Consensus 431 n~fd~~Qni~yp~iee~~ 448 (2084)
T PTZ00121 431 NSFDFAQNIIYPELEEMH 448 (2084)
T ss_pred cccccccccccchHHHhh
Confidence 355667777777777664
No 9
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.013 Score=63.47 Aligned_cols=93 Identities=12% Similarity=0.207 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHh
Q 004280 440 SRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLR 519 (764)
Q Consensus 440 ~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~~~s~~ir 519 (764)
..|++-|++.|+-..|.-++..|++|+..+|.-+.. +++.++|++|-+.+++|.+.++|+..+|.|.|....- +.
T Consensus 329 ~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld-~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~~n----~~ 403 (439)
T COG5071 329 EKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLD-MSPSETEQFISDLVNKGHFYAKINRPAQIISFEKSQN----VQ 403 (439)
T ss_pred hhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHc-CCHHHHHHHHHHHHhcCcEEEEecCccceEEeecccc----HH
Confidence 589999999999999999999999999999998877 7899999999999999999999999999999997443 35
Q ss_pred hHHHHHHHHHHHHHhhcC
Q 004280 520 DHLTIFAQSLNKVRALIY 537 (764)
Q Consensus 520 ~qL~~la~~L~~~~~~i~ 537 (764)
.+|+.++..+...+..+.
T Consensus 404 ~~lneW~~NV~ellgkle 421 (439)
T COG5071 404 EQLNEWGSNVTELLGKLE 421 (439)
T ss_pred HHHHHhcccHHHHHHHHH
Confidence 788889888888777654
No 10
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.65 E-value=0.17 Score=55.55 Aligned_cols=184 Identities=16% Similarity=0.228 Sum_probs=118.4
Q ss_pred CchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCH-HHHHHHHHHHHHHhhccCcCCCCCcchhhhhhh
Q 004280 268 PKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSL-KDLQLIASSVVLAALLVVPYDRSRSASHLELEN 346 (764)
Q Consensus 268 pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~-ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~ 346 (764)
..|.+...|=---|+|.=..+-++=.|-+|| .+.- .+...+ +-++.+++.+..-.||+|-+-+
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy---els~--~ki~~e~~~~~aL~~a~~CtlLA~~gpqr----------- 241 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYY---ELSQ--RKIVDESERLEALKKALQCTLLASAGPQR----------- 241 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHhcchHHHHHHHHHhHhheeecCCChHH-----------
Confidence 4456666665555666555555555555554 3432 122333 3356688888888888887432
Q ss_pred hHhHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCCcccccHHHHHHHHHHhhcCChhhhHHhhHHHHHHHhhhcC
Q 004280 347 EKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLEHEFLPLDLASKVQPLLAKISKYGG 426 (764)
Q Consensus 347 ~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~vl~~a~~~v~~Ly~lLE~~f~Pl~l~~k~~p~l~~l~~~~~ 426 (764)
..=|+.|+.=+.. +++|.-.-|-+..+++ |+.. +++..+-..|- -+..
T Consensus 242 ----sr~Latlfkder~-----~~l~~y~ileKmyl~r-iI~k--~el~ef~~~L~--------------------pHQk 289 (399)
T KOG1497|consen 242 ----SRMLATLFKDERC-----QKLPAYGILEKMYLER-IIRK--EELQEFEAFLQ--------------------PHQK 289 (399)
T ss_pred ----HHHHHHHhcCccc-----ccccchHHHHHHHHHH-Hhcc--hhHHHHHHHhc--------------------chhh
Confidence 2235666554433 4677776666666554 2211 33333322222 1110
Q ss_pred CcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeE
Q 004280 427 KLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVV 506 (764)
Q Consensus 427 ~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I 506 (764)
.....=..-|.++++-..+..+|+.|..|+++.|.++.. .+....|++.-+.+-.+-+.-.||...|.|
T Consensus 290 ----------a~~~dgssil~ra~~EhNlls~Skly~nisf~~Lg~ll~-i~~ekaekiaa~MI~qeRmng~IDQ~egii 358 (399)
T KOG1497|consen 290 ----------AHTMDGSSILDRAVIEHNLLSASKLYNNISFEELGALLK-IDAEKAEKIAAQMITQERMNGSIDQIEGII 358 (399)
T ss_pred ----------hcccCcchhhhhHHHHHhHHHHHHHHHhccHHHHHHHhC-CCHHHHHHHHHHHHhHHHhccchHhhcceE
Confidence 111112234567888889999999999999999999977 689999999999999999999999999999
Q ss_pred EEec
Q 004280 507 VFCN 510 (764)
Q Consensus 507 ~F~~ 510 (764)
+|.+
T Consensus 359 hFe~ 362 (399)
T KOG1497|consen 359 HFED 362 (399)
T ss_pred eecc
Confidence 9986
No 11
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=2 Score=51.93 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004280 545 KLGEMLAGLGEIVDKEHKRL 564 (764)
Q Consensus 545 ~~~~~~~~~~~~~~~eh~~~ 564 (764)
+|...+.+-...+++-++.+
T Consensus 317 KrkeNy~kGqaELerRRq~l 336 (1118)
T KOG1029|consen 317 KRKENYEKGQAELERRRQAL 336 (1118)
T ss_pred hhHHhHhhhhHHHHHHHHHH
Confidence 34444554444444444433
No 12
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=7.8 Score=44.27 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEE
Q 004280 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVV 507 (764)
Q Consensus 441 ~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~ 507 (764)
.-+..|+..++.--+.++|-+|+.|++..+.+-+-.-|..++|-++--|+++|.|...|||..|++.
T Consensus 354 ~LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRDGvIea~Id~~~g~m~ 420 (493)
T KOG2581|consen 354 TLIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQ 420 (493)
T ss_pred hHHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHhccceeeeccccCcee
Confidence 4577788888888999999999999999999877777888999999999999999999999999774
No 13
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.75 E-value=18 Score=39.67 Aligned_cols=384 Identities=18% Similarity=0.288 Sum_probs=208.9
Q ss_pred CChHHHHHHHHHHHhcccc-cchh-chHHHHHHHHHHHHhhcccccchhhhhHHHHHhhhccCcCcHHHHHHHHHHHHHH
Q 004280 21 GQKQDALQVLHDLITSKRH-RAWQ-KILEKIMFKYVELCVDMRRGKFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTE 98 (764)
Q Consensus 21 Gq~~~AL~~L~d~i~skr~-r~w~-~~lE~Im~~~ieLCVel~kg~~aKdgL~QYk~~~Q~~nv~SLe~Vir~fl~lae~ 98 (764)
..+.+||.+...|+.--.- --|. +.+.+.+.-+-.|| ++ ++.+--|+.+- .||..|-.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~------~~-~eMm~~Y~qlL-------------TYIkSAVT 100 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG------NY-KEMMERYKQLL-------------TYIKSAVT 100 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc------cH-HHHHHHHHHHH-------------HHHHHHHh
Confidence 3788999988888875432 3588 88877766665555 23 56666666542 23332222
Q ss_pred HHHHHHHHHHHHHhccCccccccCCChhHHHHHhhcCccccCcccccccchHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 004280 99 KAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMT 178 (764)
Q Consensus 99 K~~~a~~ka~~~~~~~~~dDLE~~~tPE~lLLsavs~e~~~drtdr~~vtPwlkFLWEsYR~vLdiLRnNskLE~lY~~t 178 (764)
+--..+. + +-+|-++|... -+-.|-+-|-|.||-|+ .+|=|.++..|
T Consensus 101 rNySEKs----I----------------N~IlDyiStS~------------~m~LLQ~FYeTTL~ALk-dAKNeRLWFKT 147 (440)
T KOG1464|consen 101 RNYSEKS----I----------------NSILDYISTSK------------NMDLLQEFYETTLDALK-DAKNERLWFKT 147 (440)
T ss_pred ccccHHH----H----------------HHHHHHHhhhh------------hhHHHHHHHHHHHHHHH-hhhcceeeeec
Confidence 2111110 1 11244555322 25578889999999998 56666666666
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCChhHHHHHHHHHHHhHHHHHhhhcHHHHH--HHHhH
Q 004280 179 AHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAF--YSVED 256 (764)
Q Consensus 179 a~~Af~FClkY~RktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~LeLWqEAF--rsvED 256 (764)
-. ..|.-|=-..||++|--+|++ |...++--++ -.|+.. -|+ .|+ -.|+++.+|.+-= +.+--
T Consensus 148 Nt---KLgkl~fd~~e~~kl~KIlkq-Lh~SCq~edG--edD~kK-GtQ--LLE------iYAlEIQmYT~qKnNKkLK~ 212 (440)
T KOG1464|consen 148 NT---KLGKLYFDRGEYTKLQKILKQ-LHQSCQTEDG--EDDQKK-GTQ--LLE------IYALEIQMYTEQKNNKKLKA 212 (440)
T ss_pred cc---hHhhhheeHHHHHHHHHHHHH-HHHHhccccC--chhhhc-cch--hhh------hHhhHhhhhhhhcccHHHHH
Confidence 54 357777778999999999997 5555443222 112211 111 111 1355555554421 11111
Q ss_pred HHHH-hhhhcCCCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCHHHHHHHHHHHHHHhhccCcCCC
Q 004280 257 IHGL-MCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPYDR 335 (764)
Q Consensus 257 I~~L-m~~skk~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~~~ 335 (764)
+|.= +.+----|.|-+|...-+-=.+.-+.-|-+ --|.-.||--+|+|.-+=|+--.+.+ --+|||-+-+...-+
T Consensus 213 lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~f---e~AhTDFFEAFKNYDEsGspRRttCL-KYLVLANMLmkS~iN 288 (440)
T KOG1464|consen 213 LYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEF---EKAHTDFFEAFKNYDESGSPRRTTCL-KYLVLANMLMKSGIN 288 (440)
T ss_pred HHHHHHHhhccCCchHHHhHHHHcCCccccccchH---HHHHhHHHHHHhcccccCCcchhHHH-HHHHHHHHHHHcCCC
Confidence 2211 111112378888775443222222222221 13455677777777655554443332 234455443332111
Q ss_pred CCcchhhhhhhhHhHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCCcccccHHHHHHHHHHhhcCChhhhHHhhH
Q 004280 336 SRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLEHEFLPLDLASKVQ 415 (764)
Q Consensus 336 ~~~~~~~~~d~~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~vl~~a~~~v~~Ly~lLE~~f~Pl~l~~k~~ 415 (764)
. .|++--| -+...| +|..-..|++. +-.-+|..+=.+|-..-+
T Consensus 289 -----P--FDsQEAK--------PyKNdP-----EIlAMTnlv~a--------YQ~NdI~eFE~Il~~~~~--------- 331 (440)
T KOG1464|consen 289 -----P--FDSQEAK--------PYKNDP-----EILAMTNLVAA--------YQNNDIIEFERILKSNRS--------- 331 (440)
T ss_pred -----C--CcccccC--------CCCCCH-----HHHHHHHHHHH--------HhcccHHHHHHHHHhhhc---------
Confidence 0 1110000 000000 00011111111 111233333333332111
Q ss_pred HHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCce
Q 004280 416 PLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFI 495 (764)
Q Consensus 416 p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l 495 (764)
.|. .||-.-.|+..|-+.|-+.+|..+-+-|+.|.|.++.+-+. .+..++|.+||.|+-.+.|
T Consensus 332 ----~IM------------~DpFIReh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Ln-v~~~dV~~LLV~~ILD~~i 394 (440)
T KOG1464|consen 332 ----NIM------------DDPFIREHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELN-VPEADVESLLVSCILDDTI 394 (440)
T ss_pred ----ccc------------ccHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHhhcC-CCHHHHHHHHHHHHhcccc
Confidence 112 36777888888888899999999999999999999887655 5789999999999999999
Q ss_pred eEEEeccCCeEEEecCCCCchhHhhHHHHHHHHHH
Q 004280 496 AMKIDHMRGVVVFCNLGLESDGLRDHLTIFAQSLN 530 (764)
Q Consensus 496 ~vrIDH~~~~I~F~~~~~~s~~ir~qL~~la~~L~ 530 (764)
.-+||..++.+..+...-+....-+.|..++..|.
T Consensus 395 ~g~Ide~n~~l~~~~~~~s~~k~~~al~kW~~ql~ 429 (440)
T KOG1464|consen 395 DGRIDEVNQYLELDKSKNSGSKLYKALDKWNNQLK 429 (440)
T ss_pred ccchHHhhhHhccCccCCcchHHHHHHHHHHHHHH
Confidence 99999999999998765443334455555554443
No 14
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=91.39 E-value=6.9 Score=43.55 Aligned_cols=261 Identities=16% Similarity=0.189 Sum_probs=142.2
Q ss_pred hHHHHHhhhcHHHHHHHHhHHHHHh-hhhcCCCch----hHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCC
Q 004280 237 QLKVATDLQLWQEAFYSVEDIHGLM-CMVKKTPKP----SLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNL 311 (764)
Q Consensus 237 QL~~Av~LeLWqEAFrsvEDI~~Lm-~~skk~pkp----~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~ 311 (764)
-..+..+..=|. +|+|++.+ ++.+-.| | .|.-.|-+|+++-|-. .--..++.-+++|+..+.++
T Consensus 51 ~c~v~~k~~ekd-----le~vlnsi~sLi~~~~-~e~~e~~v~a~~ekva~q~n~----~~~~l~L~vLsnLfn~~d~~- 119 (378)
T KOG2753|consen 51 ACDVLAKIPEKD-----LECVLNSIVSLIKNAP-PEKVEEMVKAICEKVAKQPND----KTASLRLQVLSNLFNGVDKP- 119 (378)
T ss_pred HhHHhhcCCcch-----HHHHHHHHHHHHHhCC-HHHhHHHHHHHHHHHhcCccC----CCcccHHHHHHHHHhccCCC-
Confidence 345555556665 99998764 4556656 5 5666788888875422 22336677777777655443
Q ss_pred CHHHHHHHHHHHHHHhhccCcCCCCCcchh-------------------------h-hhhhhHhHHHHHHHhhCCCCCCC
Q 004280 312 SLKDLQLIASSVVLAALLVVPYDRSRSASH-------------------------L-ELENEKDRNLRMANLIGFELDPK 365 (764)
Q Consensus 312 t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~-------------------------~-~~d~~~~k~~Rla~LLgl~~~pk 365 (764)
++.-.+=|.+.|=||+=|--...--+++.. + +.++..+-.+=|+.|||--+..-
T Consensus 120 ~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dn 199 (378)
T KOG2753|consen 120 TPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDN 199 (378)
T ss_pred chHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccc
Confidence 446677788888888755322111111100 0 00111222344788888443210
Q ss_pred ccccccccHHHHHHHHHHcCCcccc----cHHHHHH-----HHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCCCh
Q 004280 366 FDSREALSRSSLLSELVSKGVMSCA----TQEVKDL-----YNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPE 436 (764)
Q Consensus 366 ~~~~~iPtR~~Ll~~l~~~~vl~~a----~~~v~~L-----y~lLE~~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~ 436 (764)
-.-..--.+...+..+..-+++.+= -|.|+.| |.+|. .=+..++.....+..++
T Consensus 200 as~AredA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~i~qLL~-----IF~s~~L~aYveF~~~N------------ 262 (378)
T KOG2753|consen 200 ASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDLIHQLLK-----IFVSGKLDAYVEFVAAN------------ 262 (378)
T ss_pred hhHHHHHHHHHHHHHHcCCceeccchhccCchHHHhccchHHHHHH-----HHHhcchHHHHHHHHhC------------
Confidence 0000001122233333333443321 2455544 33333 12344555555555542
Q ss_pred hhhhhhHHHHHHHHH--HHHHH--HHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecC-
Q 004280 437 VQLSRYIPALEKLVT--LRVLQ--QVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL- 511 (764)
Q Consensus 437 ~~~~~Y~~~L~~vi~--~Rll~--qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~- 511 (764)
+.|-+-.....+..+ +|+|. +|+.--.+|+++.+.+=+. ...+++|.++++|++-+.|..+||..+.+|.-.+.
T Consensus 263 ~~Fvqs~gl~~E~~~~KMRLLTlm~LA~es~eisy~~l~k~Lq-I~edeVE~fVIdaI~aklV~~kidq~~~~viVs~~~ 341 (378)
T KOG2753|consen 263 SGFVQSQGLVHEQNMAKMRLLTLMSLAEESNEISYDTLAKELQ-INEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSSST 341 (378)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeehhh
Confidence 333333333333333 45553 4444455677777776544 46788999999999999999999999999987654
Q ss_pred --CCCch---hHhhHHHHHH
Q 004280 512 --GLESD---GLRDHLTIFA 526 (764)
Q Consensus 512 --~~~s~---~ir~qL~~la 526 (764)
.|... .+|+.|..++
T Consensus 342 hR~FG~~qW~~L~~kL~aw~ 361 (378)
T KOG2753|consen 342 HRTFGKQQWQQLRDKLAAWG 361 (378)
T ss_pred hhhcccHHHHHHHHHHHHHH
Confidence 23322 4677777775
No 15
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=46 Score=40.95 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHH
Q 004280 554 GEIVDKEHKRLLARKSIIE--KRKEEHERQLIEME 586 (764)
Q Consensus 554 ~~~~~~eh~~~l~R~~~ie--~rKE~~e~~~~~~e 586 (764)
+++.++=.-.+..|+.+++ .|||..+..+.+++
T Consensus 319 keNy~kGqaELerRRq~leeqqqreree~eqkEre 353 (1118)
T KOG1029|consen 319 KENYEKGQAELERRRQALEEQQQREREEVEQKERE 353 (1118)
T ss_pred HHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666663 34444444444444
No 16
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=90.92 E-value=23 Score=43.28 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=15.8
Q ss_pred hhHhhHHHHHHHHHHHHHhhcCCc
Q 004280 516 DGLRDHLTIFAQSLNKVRALIYPP 539 (764)
Q Consensus 516 ~~ir~qL~~la~~L~~~~~~i~p~ 539 (764)
+.+..+...+...|...+..|..+
T Consensus 864 ~e~~~~~~~~~~~id~lv~~IK~~ 887 (1259)
T KOG0163|consen 864 EEIISGANSTYRQIDDLVKKIKMP 887 (1259)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccc
Confidence 345666666677777777777654
No 17
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=90.81 E-value=2.1 Score=51.77 Aligned_cols=61 Identities=28% Similarity=0.402 Sum_probs=37.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 558 DKEHKRLLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQ 618 (764)
Q Consensus 558 ~~eh~~~l~R~~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~~ae~~Rl~eE~~~Re~e 618 (764)
-.+.+.+|+|++--++|++..++...++++++++++.++..+++++-+++-+.|..++++.
T Consensus 216 v~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~ 276 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERK 276 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888877777776666666666666666666555555555444444444444433
No 18
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.57 E-value=3 Score=52.75 Aligned_cols=9 Identities=33% Similarity=0.840 Sum_probs=4.8
Q ss_pred CChhHHHHH
Q 004280 123 KRPEDLMLS 131 (764)
Q Consensus 123 ~tPE~lLLs 131 (764)
..|++||++
T Consensus 151 LKPeNILL~ 159 (1021)
T PTZ00266 151 LKPQNIFLS 159 (1021)
T ss_pred CcHHHeEee
Confidence 455555553
No 19
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.22 E-value=1.5 Score=49.12 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCC
Q 004280 443 IPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGL 513 (764)
Q Consensus 443 ~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~~ 513 (764)
+...-.+.-.|-++.+.+-|.|++++.+.+++...+..++|+.|++.+.+|.+.++|| |-|.|..++.
T Consensus 296 ~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~n~e 363 (422)
T KOG2582|consen 296 AKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN---GMVFFTDNPE 363 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---ceEEEecCcc
Confidence 3333445667889999999999999999999988899999999999999999999999 9999998764
No 20
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=39 Score=38.07 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=140.5
Q ss_pred hhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCHHHHHHHHHH
Q 004280 243 DLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASS 322 (764)
Q Consensus 243 ~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~ 322 (764)
..+=-+++=+.++|.-..+.-.-.-| |.+=++||.-=++.|-.-||+.=--....+|..+.- -.++|..+.+..|-.
T Consensus 127 ~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d--~~~l~~se~~~lA~~ 203 (380)
T KOG2908|consen 127 EINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSD--IDDLSESEKQDLAFD 203 (380)
T ss_pred hcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccc--ccccCHHHHHHHHHH
Confidence 44455677778888887766433333 457888998888888777775422222234433332 467889999999999
Q ss_pred HHHHhhccCcCCCCCcchhhhhhhhHhHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCCcccccHHHHHHHHHHh
Q 004280 323 VVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLE 402 (764)
Q Consensus 323 vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~vl~~a~~~v~~Ly~lLE 402 (764)
+.+|||=--. =.+++.+-. +-=|-+|.|- .++-|..-++..|.-. +. .|+-|.
T Consensus 204 L~~aALLGe~---iyNfGELL~------HPilesL~gT------------~~eWL~dll~Afn~Gd-----l~-~f~~l~ 256 (380)
T KOG2908|consen 204 LSLAALLGEN---IYNFGELLA------HPILESLKGT------------NREWLKDLLIAFNSGD-----LK-RFESLK 256 (380)
T ss_pred HHHHHHhccc---cccHHHHHh------hHHHHHhcCC------------cHHHHHHHHHHhccCC-----HH-HHHHHH
Confidence 9999874321 112221100 0012224440 1333333333332211 11 111111
Q ss_pred hcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHH----HHHHHHHHHHHhheeehhhhhhccCCCC
Q 004280 403 HEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLV----TLRVLQQVSEVYQMMRIESLSQMIPFFD 478 (764)
Q Consensus 403 ~~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi----~~Rll~qlSqvY~ti~i~~L~~l~~f~~ 478 (764)
+. ..+ -|++.+|.+.|.+-| ++-+.-+-+.+-.+|+++.....+. .+
T Consensus 257 ~~----------------~~~------------~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tk-ip 307 (380)
T KOG2908|consen 257 GV----------------WGK------------QPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATK-IP 307 (380)
T ss_pred HH----------------hcc------------CchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhC-CC
Confidence 11 111 267777777666543 3333333344777899999888766 67
Q ss_pred hHHHHHHHHHHHhcCceeEEEeccCCeEEEecC---CCCchhHhhHHHHHHHHHHHHHhhc
Q 004280 479 FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL---GLESDGLRDHLTIFAQSLNKVRALI 536 (764)
Q Consensus 479 ~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~---~~~s~~ir~qL~~la~~L~~~~~~i 536 (764)
..++|-++|-|..-|.|.=.||-.+|+|+|+.- .++ ++|+..|+.+|..=.+-|
T Consensus 308 ~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~----~~qI~~Mk~rl~~W~~~v 364 (380)
T KOG2908|consen 308 NKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLD----RSQIVKMKDRLDEWNKDV 364 (380)
T ss_pred HHHHHHHHHHHHhccceeeeecccccEEEEecccccccC----HHHHHhHHHHHHHHHHHH
Confidence 899999999999999999999999999999963 234 788888888777655544
No 21
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=89.02 E-value=42 Score=37.68 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=53.0
Q ss_pred HHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCC
Q 004280 454 VLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLE 514 (764)
Q Consensus 454 ll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~~~ 514 (764)
+|.-.-++.++|+|+-|..=+. +++.++|+-||+.++...|..+||-..|.|..|+.+.+
T Consensus 339 ifEtfCRIHqcIti~mLA~kLn-m~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~s 398 (432)
T KOG2758|consen 339 IFETFCRIHQCITIDMLADKLN-MDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTVS 398 (432)
T ss_pred HHHHHHHHHHheeHHHHHHHhc-CCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCCC
Confidence 4566778889999999986555 78999999999999999999999999999999987665
No 22
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=88.67 E-value=1.1 Score=43.28 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=43.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHH
Q 004280 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVE 488 (764)
Q Consensus 436 ~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~ 488 (764)
.+.+..+++.+.+.|=.+++..+|..|++|+++.+.+++.+. ..++.+++..
T Consensus 69 ~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~-~~el~~~~~~ 120 (143)
T PF10075_consen 69 SPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLS-EEELEKFIKS 120 (143)
T ss_dssp --HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCC-HHHHHHHHHH
Confidence 468899999999999999999999999999999999999876 8899998853
No 23
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=88.34 E-value=5.3 Score=50.58 Aligned_cols=8 Identities=25% Similarity=0.945 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q 004280 181 RAFQFCKQ 188 (764)
Q Consensus 181 ~Af~FClk 188 (764)
.|+.||-.
T Consensus 129 ~ALaYLHs 136 (1021)
T PTZ00266 129 HALAYCHN 136 (1021)
T ss_pred HHHHHHHh
Confidence 35555543
No 24
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=87.45 E-value=23 Score=42.63 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhhhc
Q 004280 749 LREEEEARKREGIH 762 (764)
Q Consensus 749 ~~eeee~~~~ee~~ 762 (764)
..++|++.+|+++.
T Consensus 361 ~ea~E~rkkr~~ae 374 (811)
T KOG4364|consen 361 VEAQELRKKRHEAE 374 (811)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444454443
No 25
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=86.11 E-value=28 Score=42.59 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=10.6
Q ss_pred HHHHHHcCchHHHHH
Q 004280 281 TEIFWISSSHLYHAY 295 (764)
Q Consensus 281 a~IFw~s~n~LfHA~ 295 (764)
+.-|..-+|-++|+.
T Consensus 591 T~~FvEKNnD~LH~S 605 (1259)
T KOG0163|consen 591 TEQFVEKNNDALHNS 605 (1259)
T ss_pred hHHHHHhccHHHHHH
Confidence 566777777777764
No 26
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=82.94 E-value=1.3e+02 Score=37.07 Aligned_cols=256 Identities=17% Similarity=0.202 Sum_probs=145.9
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHhhCchhHHHHHHH-HHHHHHHHHhhccccCCCCCCCChhHHHHHHHHHHHhHHHH
Q 004280 163 EILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCE-IIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVA 241 (764)
Q Consensus 163 diLRnNskLE~lY~~ta~~Af~FClkY~RktEFrRLce-~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~A 241 (764)
+.+|.-+=|=.|||...+.=|. +--| +|.+||+.- |+=.||.|+-+|=-|=.+.==+|
T Consensus 482 ~r~rtRAmLchIYh~AL~d~f~------------~ARDlLLMSHlQdn---------I~h~D~stQIL~NRtmvQLGLCA 540 (843)
T KOG1076|consen 482 DRLRTRAMLCHIYHHALHDNFY------------TARDLLLMSHLQDN---------IQHADISTQILFNRTMVQLGLCA 540 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHH---------hhccChhHHHHHHHHHHHHHHHH
Confidence 6777778888999988876553 3345 588999874 34458899988888876666678
Q ss_pred HhhhcHHHHHHHHhHHHH------Hhhhh-------cCCC----------chhHHHHHHHHHHHHHHHcCchHHHHHHHH
Q 004280 242 TDLQLWQEAFYSVEDIHG------LMCMV-------KKTP----------KPSLLVVYYAKLTEIFWISSSHLYHAYAWF 298 (764)
Q Consensus 242 v~LeLWqEAFrsvEDI~~------Lm~~s-------kk~p----------kp~~ma~YYekLa~IFw~s~n~LfHA~A~~ 298 (764)
-..++-+||--.+-||+. |+.-. -++| -|--|-.=-+-|--||++|.--|
T Consensus 541 FR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELlEcVyLtcaMLl------- 613 (843)
T KOG1076|consen 541 FRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLL------- 613 (843)
T ss_pred HHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHHHHHHHHHHHHH-------
Confidence 889999999888888874 22100 0111 23334444555555555553211
Q ss_pred HHHhhhhhhCCCCCHHHHHHHHHHHHHHhhccCcCCCCCcchhhhhhhhHhHHHHHHHhhCCCCCCCccccccccHHHHH
Q 004280 299 KLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLL 378 (764)
Q Consensus 299 k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll 378 (764)
|+-.||+. -+--=.|.++. + ..++.+-.-=..|..||. -+|+-.+
T Consensus 614 ----------------EIP~MAA~--~~d~Rrr~iSk--~---------frr~Le~serqsf~gPPE------n~RehVv 658 (843)
T KOG1076|consen 614 ----------------EIPYMAAH--ESDARRRMISK--S---------FRRQLEHSERQSFTGPPE------NTREHVV 658 (843)
T ss_pred ----------------hhhHHhhh--hhhhhcccccH--H---------HHHHHHHHhhccccCCch------hHHHHHH
Confidence 11122222 00001111111 1 111222211122333432 3788887
Q ss_pred HHHH--HcCCcccccHHHHHHHHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHH
Q 004280 379 SELV--SKGVMSCATQEVKDLYNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQ 456 (764)
Q Consensus 379 ~~l~--~~~vl~~a~~~v~~Ly~lLE~~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~ 456 (764)
.... .+|=.+ +-++.+-++ -++-.+|+.- +.=+..-...++..-++-.|.
T Consensus 659 aAsKAm~~Gnw~-------~c~~fi~nn-------~KvW~Lfpn~--------------d~V~~Ml~~rIqEEsLRTYLf 710 (843)
T KOG1076|consen 659 AASKAMQKGNWQ-------KCFEFIVNN-------IKVWDLFPNA--------------DTVLDMLTERIQEESLRTYLF 710 (843)
T ss_pred HHHHHHhcCCHH-------HHHHHHHhh-------hhHHHhcccH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 6544 444443 333322111 1222222211 233445556677788888888
Q ss_pred HHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 004280 457 QVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (764)
Q Consensus 457 qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~ 510 (764)
--|.||+||++..|..+...+ ...+=-+|--.+-+..|.+..|..++||.|-.
T Consensus 711 tYss~Y~SvSl~~LA~mFdLp-~~~VhsIiSkmiineEl~AslDqpt~~iv~hr 763 (843)
T KOG1076|consen 711 TYSSVYDSVSLAKLADMFDLP-EPKVHSIISKMIINEELHASLDQPTQCIVMHR 763 (843)
T ss_pred HhhhhhhhccHHHHHHHhCCC-chhHHHHHHHHHHHHHhhhccCCCcceEEEee
Confidence 999999999999999997544 22222223333357789999999999999986
No 27
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=77.26 E-value=9.8 Score=46.43 Aligned_cols=62 Identities=27% Similarity=0.359 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 564 LLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQRILREIEERE 628 (764)
Q Consensus 564 ~l~R~~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~~ae~~Rl~eE~~~Re~er~~~E~e~~~ 628 (764)
+.+=+..+++++|.-|+..++ ++++.|.+.+..++.+|.+++++|++++.+++.+...++.+
T Consensus 216 v~~~qe~La~~qe~eE~qkre---eEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~K 277 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKRE---EEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKK 277 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445566666665554433 22333333334444455556666666655555555444433
No 28
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=74.86 E-value=36 Score=40.34 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 004280 552 GLGEIVDKEHKRLLARKSIIEKRK 575 (764)
Q Consensus 552 ~~~~~~~~eh~~~l~R~~~ie~rK 575 (764)
......++++.+++.+-++-|.|+
T Consensus 596 qdRks~srekr~~~sfdk~kE~Rr 619 (940)
T KOG4661|consen 596 QDRKSRSREKRRERSFDKRKEERR 619 (940)
T ss_pred hhhHHHHHHhhhhhhHHhhhhHHH
Confidence 345667777888888877776655
No 29
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=74.18 E-value=1.1e+02 Score=37.16 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 004280 554 GEIVDKEHKRLLAR 567 (764)
Q Consensus 554 ~~~~~~eh~~~l~R 567 (764)
+..++.|++.++.+
T Consensus 261 K~R~erEr~~leeK 274 (811)
T KOG4364|consen 261 KERKERERQVLEEK 274 (811)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444333333
No 30
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=73.89 E-value=53 Score=35.88 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=15.9
Q ss_pred ccccHHHHHHHHHHcCCcccccHHH
Q 004280 370 EALSRSSLLSELVSKGVMSCATQEV 394 (764)
Q Consensus 370 ~iPtR~~Ll~~l~~~~vl~~a~~~v 394 (764)
..||-.-|.+.+-.-|-+.-|+-+|
T Consensus 171 dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 171 DLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred cCChHHHHHHHHHHhccceecCCcc
Confidence 4577777777777666665555444
No 31
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.41 E-value=43 Score=36.02 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 598 KITEEAEQKRLAAEFEHRKNQRILREIEERELEEA 632 (764)
Q Consensus 598 ~~~~~ae~~Rl~eE~~~Re~er~~~E~e~~~~~e~ 632 (764)
..+++.++.|+.+|+++.+.++.+...++...++.
T Consensus 139 E~erKkdEeR~~eEae~k~ee~~RkakEE~arkeh 173 (299)
T KOG3054|consen 139 EAERKKDEERLAEEAELKEEEKERKAKEEEARKEH 173 (299)
T ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444455556666555555554444444444433
No 32
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=66.03 E-value=92 Score=37.05 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=13.9
Q ss_pred ccCCCCChhhhhhhHHHHHHHHHHHHH
Q 004280 429 ASASSVPEVQLSRYIPALEKLVTLRVL 455 (764)
Q Consensus 429 ~~~~~~~~~~~~~Y~~~L~~vi~~Rll 455 (764)
++.-+.+.++-++-++....++.-.|-
T Consensus 80 ~sq~~l~e~~~s~~~~a~t~m~~~qL~ 106 (591)
T KOG2412|consen 80 ESQDELEEEDHSQKCTAGTRMACAQLY 106 (591)
T ss_pred cccCcccCcchhHhhhccchhHHHHHH
Confidence 334444555555555555555555443
No 33
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=64.92 E-value=98 Score=36.84 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhheee
Q 004280 450 VTLRVLQQVSEVYQMMR 466 (764)
Q Consensus 450 i~~Rll~qlSqvY~ti~ 466 (764)
+-.|.+.+.|..|.-|.
T Consensus 133 ~~q~~~~~~~~~~~ki~ 149 (591)
T KOG2412|consen 133 INQRQTEIKSDIRAKIL 149 (591)
T ss_pred chhhhHhHHhhhhhhhh
Confidence 55677777777776554
No 34
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.57 E-value=35 Score=37.78 Aligned_cols=128 Identities=12% Similarity=0.191 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCcc-cccHHHHHHHHHHhh--cCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHH
Q 004280 374 RSSLLSELVSKGVMS-CATQEVKDLYNLLEH--EFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLV 450 (764)
Q Consensus 374 R~~Ll~~l~~~~vl~-~a~~~v~~Ly~lLE~--~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi 450 (764)
|+..-.-|..++-+. +.+..|+.+-.+-|. +-+-.+...-++..=+.|.+ |+-.-.....|-+++
T Consensus 262 ~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~------------D~~iRsHl~~LYD~L 329 (421)
T COG5159 262 REEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQ------------DSFIRSHLQYLYDVL 329 (421)
T ss_pred HHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhcc------------CHHHHHHHHHHHHHH
Confidence 445555555666665 777777777777662 22344444444444445543 566677788889999
Q ss_pred HHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCC
Q 004280 451 TLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLE 514 (764)
Q Consensus 451 ~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~~~ 514 (764)
+-+.+..+-.-|+.|+|+++..++. ++..+||.=|-+.+-+..+-=.+||.+||+.--..|-.
T Consensus 330 Le~Nl~kiiEPfs~VeishIa~viG-ldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ep~q 392 (421)
T COG5159 330 LEKNLVKIIEPFSVVEISHIADVIG-LDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPAQ 392 (421)
T ss_pred HHhhhhhhcCcceeeehhHHHHHhc-ccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCccc
Confidence 9999999999999999999999987 56677776554444444455567999999988766543
No 35
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.47 E-value=1.4e+02 Score=33.67 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=50.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 004280 437 VQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (764)
Q Consensus 437 ~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~ 510 (764)
|-|.-|+...+ +|+--|+=.-|.|++++...+-.. .|..-|++-|-.-+-.|.+.++||..+|+|-=+.
T Consensus 294 ~h~~yyvREMR----~rvY~QlLESYrsl~l~~MA~aFg-VSVefiDreL~rFI~~grL~ckIDrVnGVVEtNr 362 (393)
T KOG0687|consen 294 PHYRYYVREMR----RRVYAQLLESYRSLTLESMAKAFG-VSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNR 362 (393)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHhHHHHhhccCceeeeeecccceeecCC
Confidence 33444555544 455667778899999998887422 4777777777666789999999999999987664
No 36
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=60.00 E-value=53 Score=38.54 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=26.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 564 LLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRL 608 (764)
Q Consensus 564 ~l~R~~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~~ae~~Rl 608 (764)
...|...++++....|+...++.+.|++..+.+..+.+.+|+.|.
T Consensus 390 a~kraallekqqrraeear~rkqqleae~e~kreearrkaeeer~ 434 (708)
T KOG3654|consen 390 AQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEERA 434 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 445556666666666666666666666665555555555555543
No 37
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=59.71 E-value=73 Score=36.10 Aligned_cols=126 Identities=14% Similarity=0.185 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHhhcCChhhhH---HhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHH
Q 004280 374 RSSLLSELVSKGVMSCATQEVKDLYNLLEHEFLPLDLA---SKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLV 450 (764)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~~v~~Ly~lLE~~f~Pl~l~---~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi 450 (764)
++.+-.-+-.+..+.+++|+|..+=.+-| -|+--+|+ +-+...=..|.. ||-.......|.++.
T Consensus 265 ~ddv~~lls~K~~l~y~g~~i~AmkavAe-A~~nRSLkdF~~AL~~yk~eL~~------------D~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 265 PDDVAALLSAKLALKYAGRDIDAMKAVAE-AFGNRSLKDFEKALADYKKELAE------------DPIVRSHLQSLYDNL 331 (411)
T ss_pred HHHHHHHHhhHHHHhccCcchHHHHHHHH-HhcCCcHHHHHHHHHHhHHHHhc------------ChHHHHHHHHHHHHH
Confidence 34444444566677788888887777776 33332332 223333333333 566777788888888
Q ss_pred HHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCC
Q 004280 451 TLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGL 513 (764)
Q Consensus 451 ~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~~ 513 (764)
+-+-|-.+=.=|+.|+|+++..++. ++..+||+=|-+.+=+..+.=.+||..||+.--..+-
T Consensus 332 LEknl~riIEPyS~Vei~hIA~~IG-l~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e~~ 393 (411)
T KOG1463|consen 332 LEKNLCRIIEPYSRVEISHIAEVIG-LDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEEPP 393 (411)
T ss_pred HHHhHHHHcCchhhhhHHHHHHHHC-CCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeCCCC
Confidence 8888888888999999999999987 5777888888777777888888999999976544443
No 38
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.50 E-value=2.9e+02 Score=34.55 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004280 550 LAGLGEIVDKEHKRLLARKSIIEKRKEEHERQLIEME 586 (764)
Q Consensus 550 ~~~~~~~~~~eh~~~l~R~~~ie~rKE~~e~~~~~~e 586 (764)
+....+.++.++..+..++..+++.+++.++...+-+
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 554 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELE 554 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665555555544433
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=58.38 E-value=66 Score=40.60 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhcccccchhhhhHHHHH
Q 004280 49 IMFKYVELCVDMRRGKFAKDGLIQYRI 75 (764)
Q Consensus 49 Im~~~ieLCVel~kg~~aKdgL~QYk~ 75 (764)
|.+++-.-|+...||.+ +.+|.=|+.
T Consensus 164 il~LlGkA~i~ynkkdY-~~al~yyk~ 189 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDY-RGALKYYKK 189 (1018)
T ss_pred hHHHHHHHHHHhccccH-HHHHHHHHH
Confidence 44445555555555555 445544444
No 40
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=56.83 E-value=27 Score=32.27 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHcCch-HHHHHHHHHHHhhhhhhCCCCCHHHHHHHHHHHHHHhhccC
Q 004280 271 SLLVVYYAKLTEIFWISSSH-LYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVV 331 (764)
Q Consensus 271 ~~ma~YYekLa~IFw~s~n~-LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP 331 (764)
.++-.|-.-|+.||-+||-- -+.-++|.-.|.-..++...=+.||.+.+.|...||.-+|-
T Consensus 30 D~~pdYmn~lgmIfsmcGlM~r~KwCsWlAl~cs~iSfAn~R~seD~KQi~ssfMlsisavV 91 (105)
T KOG3462|consen 30 DPPPDYMNFLGMIFSMCGLMFRLKWCSWLALYCSCISFANSRNSEDAKQISSSFMLSISAVV 91 (105)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999954 46778888888777767666677899999999998877653
No 41
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=55.22 E-value=64 Score=35.80 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 695 FQERVLNRRRVEVDRRKVEREERISLIIKARKQ 727 (764)
Q Consensus 695 f~~~~~~~r~~e~~~~~~e~~~rl~~~~~~r~~ 727 (764)
-+.++...|.++.+++.++.++.-+++.++++.
T Consensus 256 ~~~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~ 288 (321)
T PF07946_consen 256 AKKKAKKNREEEEEKILKEAHQERQEEAQEKKE 288 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666555444433333333333
No 42
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.04 E-value=66 Score=34.66 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004280 743 EEKIKRLREEEEARKREG 760 (764)
Q Consensus 743 Eer~~r~~eeee~~~~ee 760 (764)
|++...++||++++.++|
T Consensus 158 ee~~RkakEE~arkeheE 175 (299)
T KOG3054|consen 158 EEKERKAKEEEARKEHEE 175 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334345666666555554
No 43
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=53.04 E-value=2.6e+02 Score=28.39 Aligned_cols=70 Identities=4% Similarity=-0.087 Sum_probs=36.3
Q ss_pred ceeEEEeccCC-eEEEecCCCCchhHhhHHHHHHHHHHHHHhhcCCchhh-hhhHHHHHHHHHHHHHHHHHHH
Q 004280 494 FIAMKIDHMRG-VVVFCNLGLESDGLRDHLTIFAQSLNKVRALIYPPANK-ASKLGEMLAGLGEIVDKEHKRL 564 (764)
Q Consensus 494 ~l~vrIDH~~~-~I~F~~~~~~s~~ir~qL~~la~~L~~~~~~i~p~~~~-~~~~~~~~~~~~~~~~~eh~~~ 564 (764)
.-+.-+||.+| ..-|+.+.|++..+- ++-.+.--+--...++-|+... -..|...+..-.+.++.-+..+
T Consensus 10 ~~~~~~~~~~~gmp~ld~~t~~~q~~~-~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA 81 (181)
T PRK13454 10 AAAAGHAASAPGMPQLDFSTFPNQIFW-LLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKA 81 (181)
T ss_pred ccccccccCCCCCCCCcHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44567888654 556666667765444 4444543333334455665443 3445555554444444444333
No 44
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=50.16 E-value=64 Score=35.79 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhheeehhhhhhccC
Q 004280 451 TLRVLQQVSEVYQMMRIESLSQMIP 475 (764)
Q Consensus 451 ~~Rll~qlSqvY~ti~i~~L~~l~~ 475 (764)
+..+|.+.......|-|++...--|
T Consensus 181 ~~~~l~~~~~~l~~i~~TDq~~~~p 205 (321)
T PF07946_consen 181 LIKALNKAGDYLEYIHFTDQPSGKP 205 (321)
T ss_pred HHHHHHhhhhheeEEEEECCCCCCC
Confidence 4555555566666666655554433
No 45
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=45.49 E-value=1.1e+02 Score=34.44 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=18.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 689 LDNKNTFQERVLNRRRVEVDRRKVEREERISL 720 (764)
Q Consensus 689 ~~d~~~f~~~~~~~r~~e~~~~~~e~~~rl~~ 720 (764)
..||..|......+-..++..|+.-+..|..+
T Consensus 85 l~ey~~~~~~~rer~E~eL~eLkekq~~r~~e 116 (361)
T KOG3634|consen 85 LGEYEDFDRIEREREEKELKELKEKQEKRKLE 116 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666555555544
No 46
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=44.95 E-value=1.3e+02 Score=35.90 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=5.6
Q ss_pred cHHHHHHHHHH
Q 004280 373 SRSSLLSELVS 383 (764)
Q Consensus 373 tR~~Ll~~l~~ 383 (764)
||++=|+.|.+
T Consensus 417 TRAtDLKnlFS 427 (940)
T KOG4661|consen 417 TRATDLKNLFS 427 (940)
T ss_pred hhhhHHHHHHH
Confidence 55555555443
No 47
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=42.91 E-value=3.2e+02 Score=30.14 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=65.3
Q ss_pred HHHHHHHHHHH-HHHcCchHHHHH-H----------------HHHHHhhhhhhCCCCCHHHHHHHHHHHHHHhhccCcCC
Q 004280 273 LVVYYAKLTEI-FWISSSHLYHAY-A----------------WFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPYD 334 (764)
Q Consensus 273 ma~YYekLa~I-Fw~s~n~LfHA~-A----------------~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~~ 334 (764)
+..+|+.|..- ||.|+ |++=|+ . =...|...|+.-|.+|..| .+...++||. +..+
T Consensus 81 ~~~~y~~L~~~gFk~~~-y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~--D~~~a~lLA~---~~~~ 154 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSE-YLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPE--DYPFAALLAM---TSED 154 (297)
T ss_pred HHHHHHHHHHhccCccC-hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCcc--chhHHHHHhc---cccc
Confidence 55566666666 44444 443332 2 2344666677788888655 3555566665 3322
Q ss_pred CCCcchhhhh------h--hhH-hHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCC-cccccHHHHHHHHHHhhc
Q 004280 335 RSRSASHLEL------E--NEK-DRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGV-MSCATQEVKDLYNLLEHE 404 (764)
Q Consensus 335 ~~~~~~~~~~------d--~~~-~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~v-l~~a~~~v~~Ly~lLE~~ 404 (764)
...-...++. + ..+ +=-+.|+..|-|.... .+.. ++-=..|.+.+...|+ +....=++-.|-.+++
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~-~~~~-v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~-- 230 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGD-DQEK-VARVIELYNALKKNGVKIKYMHYPTLGLLALLE-- 230 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcccc-chHH-HHHHHHHHHHHHHcCCccccccccHHHHHHhcC--
Confidence 1110000000 0 001 1124456666655321 1111 2223344455555554 3333333334444444
Q ss_pred CChh-hhHHhhHHHHHHHhh
Q 004280 405 FLPL-DLASKVQPLLAKISK 423 (764)
Q Consensus 405 f~Pl-~l~~k~~p~l~~l~~ 423 (764)
.|. .+...+..+.+.|..
T Consensus 231 -~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 231 -DPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred -CchHHHHHHHHHHHHHHhh
Confidence 444 666667777777765
No 48
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.48 E-value=6.3e+02 Score=31.66 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004280 550 LAGLGEIVDKEHKRLLARKSIIEKRKEEHERQL 582 (764)
Q Consensus 550 ~~~~~~~~~~eh~~~l~R~~~ie~rKE~~e~~~ 582 (764)
+....+.++.++..+...+..+++.+++.++..
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~ 545 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLK 545 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544444444444433
No 49
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=41.45 E-value=4.4e+02 Score=27.65 Aligned_cols=40 Identities=10% Similarity=0.166 Sum_probs=26.5
Q ss_pred hhHhhHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 004280 674 RHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVE 713 (764)
Q Consensus 674 ~h~~~~~~k~RL~r~~~d~~~f~~~~~~~r~~e~~~~~~e 713 (764)
.++.+-+.+.|+.|...|...+..=-+.-|..-|+.+...
T Consensus 158 ~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~emLqq 197 (225)
T KOG4848|consen 158 QEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEMLQQ 197 (225)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHHHHH
Confidence 3444555667777777777777766667777777765543
No 50
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.33 E-value=5.1e+02 Score=28.62 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhC
Q 004280 175 YAMTAHRAFQFCKQYK 190 (764)
Q Consensus 175 Y~~ta~~Af~FClkY~ 190 (764)
.+.+...|-.||.-|+
T Consensus 9 ld~lgseaedf~kaq~ 24 (445)
T KOG2891|consen 9 LDDLGSEAEDFCKAQG 24 (445)
T ss_pred HhhhhhHHHhhhhhcc
Confidence 3444455666665543
No 51
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=39.30 E-value=5.1e+02 Score=30.32 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=9.1
Q ss_pred cCCCChHHHHHHH
Q 004280 474 IPFFDFAVVEKIS 486 (764)
Q Consensus 474 ~~f~~~~~iEk~l 486 (764)
+.+++..++..++
T Consensus 141 ig~l~~~~v~sfl 153 (429)
T PRK00247 141 IGFLTSEEVESFL 153 (429)
T ss_pred cccCCHHHHHHHH
Confidence 3456778887776
No 52
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=39.09 E-value=3.2e+02 Score=31.90 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=12.0
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHh
Q 004280 649 KKPILEGEKVLHEREQQLEVELSRQR 674 (764)
Q Consensus 649 k~d~~era~~~~e~~~~~~~~~ak~~ 674 (764)
+..+.+.=.+.+........++-++.
T Consensus 276 ~~P~~~~~~~~~~~~~~~~~~~~~~~ 301 (429)
T PRK00247 276 KYPLTDEFKEHHAEQRAQYREKQKEK 301 (429)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 33443332355555555555544443
No 53
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.72 E-value=7.3e+02 Score=29.09 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=66.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC
Q 004280 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG 512 (764)
Q Consensus 436 ~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~ 512 (764)
|.+++.-|+.|-..|-.|-+.|.-+=|.|+++.....-.. .|...+|.-|++.+-.|.|+.|||--.++++-.+..
T Consensus 337 D~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~-~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~~ 412 (466)
T KOG0686|consen 337 DMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFN-TSVAILESELLELILEGKISGRIDSHNKILYARDAD 412 (466)
T ss_pred chhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhc-ccHHHHHHHHHHHHHccchheeeccccceeeecccc
Confidence 5788888999999999999999999999999987765322 589999999999999999999999999999987653
No 54
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.96 E-value=1e+02 Score=27.85 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=35.1
Q ss_pred hhhHHHhHHHHHhcCChHHHHHHHHHHHhcccccchh-chHHHHHHHHHHHH
Q 004280 7 PEAALNQAEALINVGQKQDALQVLHDLITSKRHRAWQ-KILEKIMFKYVELC 57 (764)
Q Consensus 7 PEnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~-~~lE~Im~~~ieLC 57 (764)
++.-+.-|.-++..|++++|++.|-+++.. .+.|. ..--.-|+.+.++|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~--dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRR--DRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccccccHHHHHHHHHHHHc
Confidence 456678899999999999999999999976 57885 44444444444444
No 55
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=34.87 E-value=8.5e+02 Score=29.03 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=23.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhh
Q 004280 437 VQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQ 472 (764)
Q Consensus 437 ~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~ 472 (764)
..++.|+ .+.+.+.+.-+.-++..|.++-+.+|..
T Consensus 104 ~~lA~fi-t~YNAv~R~~~~~~~~~Y~~~v~~~l~~ 138 (489)
T PF05262_consen 104 ETLATFI-TIYNAVYRGDLDYFKKKYKNVVIKNLTP 138 (489)
T ss_pred HHHHHHH-HHHHHHHcCCHHHHHHHhhHHHHhhcCh
Confidence 3455555 4556666777777788888777777653
No 56
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=34.70 E-value=76 Score=36.44 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHh---heeehhhhhhccCCCC-----hHHHHHHHHHHHhcCceeEEEeccCCeEEEecC-CCC
Q 004280 446 LEKLVTLRVLQQVSEVY---QMMRIESLSQMIPFFD-----FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL-GLE 514 (764)
Q Consensus 446 L~~vi~~Rll~qlSqvY---~ti~i~~L~~l~~f~~-----~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~-~~~ 514 (764)
+.-|+.+++|+.+.+.. ..++++.+..-.+|.+ ..++|=+|++++..|.|.-=|+|...++.|... +||
T Consensus 312 l~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~pfp 389 (394)
T KOG2688|consen 312 LPLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDPFP 389 (394)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCCCC
Confidence 77889999999999999 8899999887766664 999999999999999999999999999999875 565
No 57
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=34.25 E-value=1.7e+02 Score=33.73 Aligned_cols=121 Identities=25% Similarity=0.319 Sum_probs=78.1
Q ss_pred hHHHHHhhcCcccc--Ccc-cccccchHHHHHHHHHHHHHHHhc---------cc-hhhHHHHHHHHHHHHHHHHhhCch
Q 004280 126 EDLMLSYVSGEKGK--DRS-DRELVTPWFKFLWETYRTVLEILR---------NN-SKLEALYAMTAHRAFQFCKQYKRT 192 (764)
Q Consensus 126 E~lLLsavs~e~~~--drt-dr~~vtPwlkFLWEsYR~vLdiLR---------nN-skLE~lY~~ta~~Af~FClkY~Rk 192 (764)
-++++++++..+.. +|. .+.-+---+.-+|.+|..-.--|= .+ .=++..-+.|-..++-||-
T Consensus 264 anl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~f~~~f~~~w~~~~~~~~~~~~~~~~~~l~~i~~d~~gfag----- 338 (401)
T PRK09550 264 ANLLLNYCSQPGLLGPREAAFREWLLETIEETWSTFAEKFLKLWRKESVDAALAEEGYLEAYLQNILRDAVGFAG----- 338 (401)
T ss_pred HHHHHHHhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHhhh-----
Confidence 36789999876531 111 232334445789999987763331 12 2246666788888999985
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCCCCChhHHHHHHHHHHHhHHHHHhhhcHHHHHHHHhHHHHHhhhh
Q 004280 193 TEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMV 264 (764)
Q Consensus 193 tEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~s 264 (764)
||++|.=+.- .|..||..-+....=...--..|.++..|=+=.+.|+|++|+-.++..+
T Consensus 339 ------~e~~RR~vG~-------a~v~d~~~i~d~~~r~~~er~~l~~g~~li~~~~~~~~~~~~~~~~~~~ 397 (401)
T PRK09550 339 ------CELIRRTIGL-------AHVADLDTIEDPELRAEAERHALKLGRELILNRDKIASIEDLIALFRQI 397 (401)
T ss_pred ------HHHhhhhccc-------ccccccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 8888874433 2344553333333344445567889999989999999999998876644
No 58
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.17 E-value=65 Score=34.12 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=39.2
Q ss_pred HHHhHHHHHhcCChHHHHHHHHHHHhcccccchhchHHHHHHHHHHHHh
Q 004280 10 ALNQAEALINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCV 58 (764)
Q Consensus 10 ALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~~~lE~Im~~~ieLCV 58 (764)
.+.-|+|+...|+++.|+..|..+..+=|.=+|...++.|..+..+=..
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK 229 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999997775555788888888776555333
No 59
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.95 E-value=77 Score=31.80 Aligned_cols=46 Identities=9% Similarity=0.131 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHH
Q 004280 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISV 487 (764)
Q Consensus 441 ~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv 487 (764)
.-+..+++..-.|.|+-++|.|+||.++.|..++. ++..+.-+.|+
T Consensus 109 ~imaAf~D~~~kR~FaLl~qAYssI~~~D~A~FlG-l~~ddAtk~il 154 (197)
T KOG4414|consen 109 DIMAAFRDATRKRAFALLLQAYSSIIADDFAAFLG-LPEDDATKGIL 154 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHH
Confidence 34555667788999999999999999999998876 45566666665
No 60
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.50 E-value=9e+02 Score=30.41 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=5.4
Q ss_pred HHHHHHhHHHH
Q 004280 231 LDTRFEQLKVA 241 (764)
Q Consensus 231 LetRf~QL~~A 241 (764)
|+.++.+|..-
T Consensus 232 ln~~l~~l~~~ 242 (782)
T PRK00409 232 LNNEIRELRNK 242 (782)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 61
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=31.89 E-value=5.6e+02 Score=26.01 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=3.6
Q ss_pred hcCCch
Q 004280 535 LIYPPA 540 (764)
Q Consensus 535 ~i~p~~ 540 (764)
.+||+.
T Consensus 40 llDpa~ 45 (157)
T PF15236_consen 40 LLDPAQ 45 (157)
T ss_pred cCCHHH
Confidence 567754
No 62
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.65 E-value=9.9e+02 Score=29.99 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=8.9
Q ss_pred HHHHHHHhHHHHHh
Q 004280 230 YLDTRFEQLKVATD 243 (764)
Q Consensus 230 ~LetRf~QL~~Av~ 243 (764)
-|..++.+|...+.
T Consensus 226 ~ln~~l~~l~~~~~ 239 (771)
T TIGR01069 226 KLNNKLAQLKNEEE 239 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 46667777666555
No 63
>COG4857 Predicted kinase [General function prediction only]
Probab=31.64 E-value=3.2e+02 Score=30.72 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=66.7
Q ss_pred HHHHHhhcCcccc-Cccc----ccccchHH-----------HHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHHhh
Q 004280 127 DLMLSYVSGEKGK-DRSD----RELVTPWF-----------KFLWETYRTVLEILRN-NSKLEALYAMTAHRAFQFCKQY 189 (764)
Q Consensus 127 ~lLLsavs~e~~~-drtd----r~~vtPwl-----------kFLWEsYR~vLdiLRn-NskLE~lY~~ta~~Af~FClkY 189 (764)
++-||++|..+-- |--. |+.+--+. .-||++|| -.+++.| ..-|..+-+.|...++-|.-
T Consensus 270 Nl~~~~~s~~g~~~~~~krd~~r~~L~e~i~~iw~~F~e~fs~lW~k~~-~~~l~~n~e~~ld~~i~~I~~d~lgfAG-- 346 (408)
T COG4857 270 NLWMSLFSQKGFEEDSGKRDEMRAYLLECILDIWETFREEFSLLWRKER-QDKLFENAEQALDYVIENIWKDSLGFAG-- 346 (408)
T ss_pred HHHHHHHhhhchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhHHHHHHHHHHHHHHHHhhcch--
Confidence 7788888875432 2122 22222222 34666666 3455555 23344455666666666653
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccccCCCCCCCChhHHHHHHHHHHHhHHHHHhhhcHHHHHHHHhHHHHHhhhh
Q 004280 190 KRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMV 264 (764)
Q Consensus 190 ~RktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~s 264 (764)
||+.|.-+..+. .-||..-..-.+-+.--=..|..++.|-.=..-|.|+.||..|..+.
T Consensus 347 ---------~E~iRRtlGlAh-------vadl~ti~~~dkr~~~e~~al~~g~~~i~kr~~~~si~dv~~l~~ll 405 (408)
T COG4857 347 ---------IEMIRRTLGLAH-------VADLETIADSDKRAQCEKKALKKGRHMIVKRSEIHSITDVIELAKLL 405 (408)
T ss_pred ---------HHHHHHHhhhhh-------hccccccCCHHHHhhhHHHHHHHhHHHHhhhhhcccHHHHHHHHHHH
Confidence 788887665542 33332222122222223345677777777888899999999886543
No 64
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=31.58 E-value=4.1e+02 Score=26.87 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHhhc-------CChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHH
Q 004280 374 RSSLLSELVSKGVMSCATQEVKDLYNLLEHE-------FLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPAL 446 (764)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~~v~~Ly~lLE~~-------f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L 446 (764)
-.+|++-....|.+..+..++..+..+++.+ .+|.-=..+=..++..+-... -++.+..++.-|
T Consensus 13 A~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~~---------~~~~~~nfl~~L 83 (184)
T CHL00119 13 AEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGSQ---------INENTLKFLMVL 83 (184)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHhc---------cCHHHHHHHHHH
Confidence 3467777777788888888888888888653 244422222234444442200 023333333333
Q ss_pred HHHHHHHHHHHHHHHhheeehhhhhhc-----cCCC-ChHH---HHHHHHHHHh--cCceeEEEec--cCC-eEEEecCC
Q 004280 447 EKLVTLRVLQQVSEVYQMMRIESLSQM-----IPFF-DFAV---VEKISVEAVK--HNFIAMKIDH--MRG-VVVFCNLG 512 (764)
Q Consensus 447 ~~vi~~Rll~qlSqvY~ti~i~~L~~l-----~~f~-~~~~---iEk~lv~a~~--~~~l~vrIDH--~~~-~I~F~~~~ 512 (764)
-+-=-..++..+...|..+--+.-... .+++ +..+ |...|-.... ...+...||. ..| .|.+|+..
T Consensus 84 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~~~~v~l~~~vD~~ligGi~i~~g~~~ 163 (184)
T CHL00119 84 VDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKEIKLVITVDPSLIGGFLIKIGSKV 163 (184)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCCeEEEEeeeChHHhCcEEEEECCEE
Confidence 222112345555555544433321111 1232 4444 4444433221 2334777788 344 56677666
Q ss_pred CCchhHhhHHHHHHHHHHHHH
Q 004280 513 LESDGLRDHLTIFAQSLNKVR 533 (764)
Q Consensus 513 ~~s~~ir~qL~~la~~L~~~~ 533 (764)
+++. ++++|..+...|..++
T Consensus 164 ~D~S-i~~~L~~l~~~l~~~~ 183 (184)
T CHL00119 164 IDTS-IKGQLKQLASHLDTVL 183 (184)
T ss_pred EeHh-HHHHHHHHHHHHHHhc
Confidence 6543 7799999888887764
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=31.48 E-value=4.8e+02 Score=33.46 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 004280 158 YRTVLEIL 165 (764)
Q Consensus 158 YR~vLdiL 165 (764)
|-+.+|+|
T Consensus 436 ~~~A~d~L 443 (1018)
T KOG2002|consen 436 YGNALDIL 443 (1018)
T ss_pred HHHHHHHH
Confidence 33334333
No 66
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=31.31 E-value=72 Score=24.34 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=27.5
Q ss_pred hhhHHHhHHHHHhcCChHHHHHHHHHHHhc
Q 004280 7 PEAALNQAEALINVGQKQDALQVLHDLITS 36 (764)
Q Consensus 7 PEnALKRA~ELi~vGq~~~AL~~L~d~i~s 36 (764)
|+.-+..|.-+...|+++.|.+.+..++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888999999999999999999999875
No 67
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=31.30 E-value=1.6e+02 Score=27.57 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004280 658 VLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVEREERIS 719 (764)
Q Consensus 658 ~~~e~~~~~~~~~ak~~h~~~~~~k~RL~r~~~d~~~f~~~~~~~r~~e~~~~~~e~~~rl~ 719 (764)
-+|+..++.+.. -.++|+..++.|+-+..+=+|=-.|.+.|...+.++=.....+-.+.|.
T Consensus 39 sLye~LqenK~~-Kq~efeE~~K~kn~~r~LDedE~eFLd~v~~~~~~~E~~~~~ee~eeL~ 99 (102)
T PF10187_consen 39 SLYERLQENKAA-KQEEFEEKHKLKNQFRGLDEDEIEFLDEVEEKKRAEERQRKREEEEELE 99 (102)
T ss_pred CHHHHHHHHHHH-HHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999988754 6788999999999999999999999999988876655555554444443
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=31.14 E-value=61 Score=26.21 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=41.3
Q ss_pred HHhcCChHHHHHHHHHHHhcccccchhchHHHHHHHHHHHHhhcccccchhhhhHHHHHhhh
Q 004280 17 LINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDMRRGKFAKDGLIQYRIVCQ 78 (764)
Q Consensus 17 Li~vGq~~~AL~~L~d~i~skr~r~w~~~lE~Im~~~ieLCVel~kg~~aKdgL~QYk~~~Q 78 (764)
|+..|+++.|+..+..++..- |..-.+++.+..+|+...+-..|...|.++....+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 678899999999999987652 44667888899999988776666666655554443
No 69
>PF11728 DUF939_C: DUF939 C-terminal domain; InterPro: IPR021062 This entry represents a C-terminal domain found in a set of bacterial proteins. The proteins are about 160 amino acids in length and are predicted to be multi-pass membrane proteins. ; PDB: 3KMI_B.
Probab=29.70 E-value=5.9e+02 Score=25.61 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCChhHHHHHHHHHHHhHHHHHhhhcHHHHHHHHhHHHHHhhhhcC-CCchhHHHHHHHHHHHHHHHcCchHHHHHHHHH
Q 004280 221 LSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMVKK-TPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFK 299 (764)
Q Consensus 221 ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk-~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k 299 (764)
++++.....|++-|-.|+++ +++++..++-... +|-..++|.|.+.++.-+-..++...=-.-+..
T Consensus 62 ~~~~~yy~~Yf~MR~~Q~~i-------------L~~M~~~l~~i~~~~~q~~~ia~~~~~~a~~~~e~n~~~~ll~~L~~ 128 (167)
T PF11728_consen 62 LRNENYYYHYFEMREKQLEI-------------LKRMYPNLSKIYMSPKQAEIIADFLEELAESLHENNTAEELLEELEE 128 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHTT-SS--HHHHHHHHHHHHHHH----TTHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 57888888999999999887 6777777664444 344688999999999987777766555555566
Q ss_pred HHhhhhhhCCCCCHHHHHHHHHH
Q 004280 300 LFTLQKTYNKNLSLKDLQLIASS 322 (764)
Q Consensus 300 ~f~l~k~~~~~~t~ee~~~~AS~ 322 (764)
.+.-+++..=+-|.+|+..=|+.
T Consensus 129 l~~~fr~~~LP~TReEFE~RA~L 151 (167)
T PF11728_consen 129 LKEEFREMPLPKTREEFENRAAL 151 (167)
T ss_dssp HHHHHHTS---SSHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHH
Confidence 66667777667788888765543
No 70
>TIGR02838 spore_V_AC stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect.
Probab=28.19 E-value=1.1e+02 Score=30.44 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=37.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCHHHHH--HHHHHHHHHhhc
Q 004280 266 KTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQ--LIASSVVLAALL 329 (764)
Q Consensus 266 k~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~--~~AS~vlLAaLs 329 (764)
.+|||..+.|| ..-|++.|--..=+-.+..+|...- ++|++|.. .+...|+++++-
T Consensus 10 ~~Pk~~~~~n~----l~AFlvGG~IC~iGQ~l~d~~~~~~----~lt~~~a~~~~~~~lV~lgaiL 67 (141)
T TIGR02838 10 YEPKPPYLKNC----VMAFLVGGLICLIGQLISDFYLRYF----QFSEKTAGSPTSATLIFISALL 67 (141)
T ss_pred cCCCCcHHHHH----HHHHHhCcHHHHHHHHHHHHHHHhc----cCChhhcccchhhHHHHHHHHH
Confidence 46999988776 5789999998888888888883221 13333322 256667777664
No 71
>PF13076 DUF3940: Protein of unknown function (DUF3940)
Probab=28.05 E-value=60 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHH
Q 004280 374 RSSLLSELVSKGVMSCATQEVKDLYNL 400 (764)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~~v~~Ly~l 400 (764)
+..||..|+..||++..+ ++||++
T Consensus 3 K~~lI~~Li~~Giyk~~d---rqL~El 26 (38)
T PF13076_consen 3 KDFLIEKLIQSGIYKKED---RQLYEL 26 (38)
T ss_pred HHHHHHHHHHcCCcCccc---hHHHHc
Confidence 678999999999998877 788876
No 72
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=26.62 E-value=94 Score=29.19 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCchH-HHHHHHHHHHhhhhhhCCCCCHHHHHHHHHHHHHHhhcc
Q 004280 272 LLVVYYAKLTEIFWISSSHL-YHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLV 330 (764)
Q Consensus 272 ~ma~YYekLa~IFw~s~n~L-fHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsI 330 (764)
.-..|+.-|+.||-.+|-.+ ++-+||.-+|.....+...=+++|.+.+.+.+.+|++++
T Consensus 30 ~~~Dy~~~L~~~~~m~gl~mr~K~~aW~al~~s~~S~an~k~~~d~kq~~ss~m~sv~al 89 (103)
T PF03669_consen 30 PPPDYMSFLGMIFSMAGLMMRNKWCAWAALFFSCQSFANMKSSNDTKQISSSFMFSVMAL 89 (103)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 46789999999999998554 778888777766543322112677788888898888875
No 73
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=26.19 E-value=4.1e+02 Score=30.42 Aligned_cols=120 Identities=17% Similarity=0.315 Sum_probs=76.4
Q ss_pred HHHHHhhcCccccCcccccccchHH----HHHHHHHHHHHHHh-cc----------chhhHHHHHHHHHHHHHHHHhhCc
Q 004280 127 DLMLSYVSGEKGKDRSDRELVTPWF----KFLWETYRTVLEIL-RN----------NSKLEALYAMTAHRAFQFCKQYKR 191 (764)
Q Consensus 127 ~lLLsavs~e~~~drtdr~~vtPwl----kFLWEsYR~vLdiL-Rn----------NskLE~lY~~ta~~Af~FClkY~R 191 (764)
++++++++.++.....+|.--.-|+ .-+|.+|..-.--| +. ..=++..-..+-..++-||-
T Consensus 234 nL~l~~~~~~~~~~~~~~~~~~~~ll~~i~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~l~~i~~d~~Gfag---- 309 (370)
T TIGR01767 234 NLFLNALSRDGADQKGKRDAMREPLLEHVNQVWETFEETFSELWQKDSLDMVYANIDGYLTDTLSHIWEDAIGFAG---- 309 (370)
T ss_pred HHHHHHhCccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHhH----
Confidence 6899999887665444555556664 56676665444222 11 12235556677778888885
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccCCCCCCCChhHHHHHHHHHHHhHHHHHhhhcHHHHHHHHhHHHHHhhhh
Q 004280 192 TTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMV 264 (764)
Q Consensus 192 ktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~s 264 (764)
|+++|.=+.- .|..||..-+....=.......|..+..|=+=.+.|+|++|+..++.+.
T Consensus 310 -------~e~iRR~vG~-------Ahv~D~~~I~d~~~R~~~er~~l~~g~~li~~~~~~~~~~~~~~~~~~~ 368 (370)
T TIGR01767 310 -------CELIRRTIGL-------AHVADLDTIVDFAKRIGCKRLALETGRAFIVKRSEIKSIDEVIELFALL 368 (370)
T ss_pred -------HHHHHHhccc-------ccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 8888874433 3445553333333334444558899999889999999999998876643
No 74
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.31 E-value=7.5e+02 Score=25.00 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=26.3
Q ss_pred chhHhhHHHHHHHHHHHHHhhcCCchhh-hhhHHHHHHHHHHHHHHHHH
Q 004280 515 SDGLRDHLTIFAQSLNKVRALIYPPANK-ASKLGEMLAGLGEIVDKEHK 562 (764)
Q Consensus 515 s~~ir~qL~~la~~L~~~~~~i~p~~~~-~~~~~~~~~~~~~~~~~eh~ 562 (764)
.+.+-.|+-+|.-.|.-...+..+|... -..|...+..-...++.-+.
T Consensus 24 ~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~ 72 (184)
T CHL00019 24 TDILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERRE 72 (184)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777776666666666555433 33444444444444444443
No 75
>COG3124 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.98 E-value=2.5e+02 Score=28.74 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=45.5
Q ss_pred HHHHHHhHHHHHhhhcHHHHHHHHhHHHHHh-hhhcCCCchhHH-------HHHHHHHHHHHHH
Q 004280 231 LDTRFEQLKVATDLQLWQEAFYSVEDIHGLM-CMVKKTPKPSLL-------VVYYAKLTEIFWI 286 (764)
Q Consensus 231 LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm-~~skk~pkp~~m-------a~YYekLa~IFw~ 286 (764)
+--||.-||-..-=|-|-+.|+-..-|-+.+ .|+.+.|++..+ ..-|.-|..-||+
T Consensus 116 ~P~Rf~~ln~~lwse~WL~~Yre~~~ir~vL~gMa~R~prl~~L~~Sw~~l~~~Y~~Lea~F~~ 179 (193)
T COG3124 116 LPERFVRLNNYLWSEQWLVRYREMAFIRNVLNGMASRRPRLDALRDSWYDLDAHYDALEARFWQ 179 (193)
T ss_pred CcHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhchHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999998765 489999998554 4567777777775
No 76
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=2e+02 Score=32.14 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=54.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEe
Q 004280 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFC 509 (764)
Q Consensus 436 ~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~ 509 (764)
+..+..+++..=+-.=+|+.-|+=..|.+++++...+-.. .|..-|++=|-.-+-+|.+.+.||..+|+|.=+
T Consensus 303 d~fl~rh~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFg-VSV~yvdrDLg~FIp~~~LncvIDRvnGvVetn 375 (412)
T COG5187 303 DVFLGRHVDLFVREMRRRVYAQLLESYRLLSLESMAQTFG-VSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETN 375 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ccHHHHhhhHHhhCCCCceeeeeecccceEecc
Confidence 4555555555555556788889999999999998876322 366667766666668999999999999988554
No 77
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.36 E-value=8.6e+02 Score=25.90 Aligned_cols=82 Identities=22% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHhhhhhccccHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004280 680 REKYRLSRMLDNKNTFQERVLNRRRVEVDR----------RKVEREERISLIIKARKQEREAKRKKIFYVRTEEEKIKRL 749 (764)
Q Consensus 680 ~~k~RL~r~~~d~~~f~~~~~~~r~~e~~~----------~~~e~~~rl~~~~~~r~~er~~~Rr~~~~~~~eEer~~r~ 749 (764)
..++|+..++..-......+++.++..+.+ --.--+..+-...-+-=++.+..|+....+..+|.+++|+
T Consensus 111 ~~rkr~~~~y~~ak~~~~~~~~ekkkklkKegkpt~ieedDp~lfk~av~~~~mklfae~erkRk~~e~r~~~eRkr~re 190 (250)
T KOG1150|consen 111 KIRKRCLDVYTAAKNRLEKVMSEKKKKLKKEGKPTIIEEDDPELFKQAVYKQVMKLFAELERKRKELEARANEERKRQRE 190 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHH--HHhhhh
Q 004280 750 REEEEA--RKREGI 761 (764)
Q Consensus 750 ~eeee~--~~~ee~ 761 (764)
.|.+++ +|++++
T Consensus 191 ~eIeaeek~Kr~~E 204 (250)
T KOG1150|consen 191 EEIEAEEKRKRERE 204 (250)
T ss_pred HHHHHHHHHHHHHH
No 78
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.35 E-value=1.1e+02 Score=24.28 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=23.5
Q ss_pred HHhHHHHHhcCChHHHHHHHHHHHhc
Q 004280 11 LNQAEALINVGQKQDALQVLHDLITS 36 (764)
Q Consensus 11 LKRA~ELi~vGq~~~AL~~L~d~i~s 36 (764)
|--|..+|..|.++.|...|.+++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 55689999999999999999999965
No 79
>COG3556 Predicted membrane protein [Function unknown]
Probab=22.09 E-value=1e+02 Score=30.43 Aligned_cols=35 Identities=20% Similarity=0.559 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcC-------chHHHHHHHHHHHhhhhhhCCCCCHHHHHHHHHHHHHHhhccCcC
Q 004280 276 YYAKLTEIFWISS-------SHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPY 333 (764)
Q Consensus 276 YYekLa~IFw~s~-------n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~ 333 (764)
--.-+++|||-.. |++||| +|+-+|+.+-||||++
T Consensus 56 lisGi~rv~~~~KG~dfYv~n~~F~a-----------------------KmglFvlvgLlSi~PT 97 (150)
T COG3556 56 LISGIARVFWSGKGVDFYVHNWMFHA-----------------------KMGLFVLVGLLSIIPT 97 (150)
T ss_pred HHHHHHHHHHhccceeEEEechHHHH-----------------------HHHHHHHHHHHhccch
Confidence 3457899999874 555554 4688999999999986
No 80
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=22.05 E-value=8.3e+02 Score=24.66 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHcCCcccccHHHHHHHHHHhhc-------CChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHH
Q 004280 372 LSRSSLLSELVSKGVMSCATQEVKDLYNLLEHE-------FLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIP 444 (764)
Q Consensus 372 PtR~~Ll~~l~~~~vl~~a~~~v~~Ly~lLE~~-------f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~ 444 (764)
|--.+|+.-....|-+..+..++..+-.+++++ .+|.-=..+=..+|..+-..+. ++.+..++.
T Consensus 10 ~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~~~---------~~~~~nfl~ 80 (179)
T PRK13436 10 NYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSAKI---------DIYLVNFLK 80 (179)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhccC---------CHHHHHHHH
Confidence 445578888888888888888888888888643 2454222222344444432100 234444443
Q ss_pred HHHHHHHHHHHHHHHHHhheeehhhh-------hhccCCCChHHHHHHHHHHHhc----CceeEEEec---cCCeEEEec
Q 004280 445 ALEKLVTLRVLQQVSEVYQMMRIESL-------SQMIPFFDFAVVEKISVEAVKH----NFIAMKIDH---MRGVVVFCN 510 (764)
Q Consensus 445 ~L~~vi~~Rll~qlSqvY~ti~i~~L-------~~l~~f~~~~~iEk~lv~a~~~----~~l~vrIDH---~~~~I~F~~ 510 (764)
-|-+-==..+|..+...|..+--... .+-.| .|..+++++.-..-+. =.+...||- ..=+|.+|+
T Consensus 81 ll~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~-Ls~~~~~~i~~~l~~~~g~~v~l~~~vDpslIGGi~i~~gd 159 (179)
T PRK13436 81 ILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEP-LSEVQISRFESKLSKKLNKKVHLVNKIDPKLIAGIKIKVDN 159 (179)
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCC-CCHHHHHHHHHHHHHHHCCeEEEEeecCHHHcCceEEEECC
Confidence 33333223344555555544322222 22122 3666666665333222 234445666 333566676
Q ss_pred CCCCchhHhhHHHHHHHHHH
Q 004280 511 LGLESDGLRDHLTIFAQSLN 530 (764)
Q Consensus 511 ~~~~s~~ir~qL~~la~~L~ 530 (764)
..++. .|+++|..|...|.
T Consensus 160 ~viD~-Sik~~L~~l~~~l~ 178 (179)
T PRK13436 160 KVFEN-SIKSKLKELKKQVL 178 (179)
T ss_pred EEeeh-hHHHHHHHHHHHHh
Confidence 66664 38999999988764
No 81
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.67 E-value=1.7e+03 Score=28.07 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhHHHHhhhhhcc--ccHHHHHHHHHHHHHH
Q 004280 656 EKVLHEREQQLEVELSRQRHDGDLREKYRLSRML--DNKNTFQERVLNRRRV 705 (764)
Q Consensus 656 a~~~~e~~~~~~~~~ak~~h~~~~~~k~RL~r~~--~d~~~f~~~~~~~r~~ 705 (764)
..++.|..+.+.|+....+|+..+..-.+=.|+- -|+..|.+.++...++
T Consensus 842 EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe 893 (1187)
T KOG0579|consen 842 EMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKE 893 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3478888999999999999988777666555554 4678898888776654
No 82
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=21.36 E-value=1.4e+03 Score=27.21 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.6
Q ss_pred CcccccHHHH
Q 004280 386 VMSCATQEVK 395 (764)
Q Consensus 386 vl~~a~~~v~ 395 (764)
|+-.|||+..
T Consensus 53 ii~~vd~~~~ 62 (489)
T PF05262_consen 53 IIHAVDPEEK 62 (489)
T ss_pred EEEecCcccc
Confidence 3445555443
No 83
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.25 E-value=2.1e+03 Score=28.62 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH-hcCceeEEEeccCCeEEEecCCCCchhHhhHHHHHHHHHHHHHhh
Q 004280 480 AVVEKISVEAV-KHNFIAMKIDHMRGVVVFCNLGLESDGLRDHLTIFAQSLNKVRAL 535 (764)
Q Consensus 480 ~~iEk~lv~a~-~~~~l~vrIDH~~~~I~F~~~~~~s~~ir~qL~~la~~L~~~~~~ 535 (764)
.+++|.+++.. ..+...|.||-.+=.+. ....+-+.++.++..+...|..+...
T Consensus 568 ~dL~P~l~~~~~~dslyGl~LdL~~I~~p--d~~~~ee~L~~~l~~~~~~l~~~~~~ 622 (1201)
T PF12128_consen 568 TDLEPQLVEDSGSDSLYGLSLDLSAIDVP--DYAASEEELRERLEQAEDQLQSAEER 622 (1201)
T ss_pred CCCCCeecCCCcccccceeEeehhhcCCc--hhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 34444454443 34555666654332210 01123345677777666666666544
Done!