Query 004280
Match_columns 764
No_of_seqs 139 out of 193
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 20:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 99.1 8.2E-09 2.8E-13 115.2 26.9 407 8-538 18-428 (445)
2 4b4t_Q 26S proteasome regulato 99.0 5.9E-07 2E-11 95.1 33.7 392 6-514 3-405 (434)
3 3txn_A 26S proteasome regulato 99.0 3.6E-07 1.2E-11 100.9 29.6 291 154-512 57-363 (394)
4 4b4t_R RPN7, 26S proteasome re 98.5 6.4E-06 2.2E-10 91.2 20.8 223 230-511 167-393 (429)
5 4b4t_O 26S proteasome regulato 98.4 8.4E-06 2.9E-10 89.6 18.9 252 231-538 127-386 (393)
6 1ufm_A COP9 complex subunit 4; 97.7 3.6E-05 1.2E-09 67.5 6.1 65 445-510 11-75 (84)
7 4b4t_S RPN3, 26S proteasome re 97.5 0.00034 1.2E-08 79.6 11.5 71 441-511 378-448 (523)
8 3t5x_A PCI domain-containing p 95.9 0.013 4.5E-07 58.8 7.1 73 443-515 118-198 (203)
9 3t5v_B Nuclear mRNA export pro 90.7 0.23 7.9E-06 55.7 5.6 73 443-515 335-438 (455)
10 4b0z_A RPN12, 26S proteasome r 88.3 1 3.4E-05 45.9 7.7 67 436-510 162-228 (229)
11 1rz4_A Eukaryotic translation 87.7 10 0.00035 38.6 14.8 66 438-510 126-191 (226)
12 3chm_A COP9 signalosome comple 83.8 1.5 5.3E-05 42.8 6.1 50 461-510 106-156 (169)
13 4b4t_T 26S proteasome regulato 64.9 7.2 0.00025 40.7 5.6 70 435-512 170-239 (274)
14 3kmi_A Putative membrane prote 52.7 1.3E+02 0.0045 29.2 11.9 141 167-322 13-157 (177)
15 3vkg_A Dynein heavy chain, cyt 37.6 7E+02 0.024 34.7 18.7 22 666-687 2042-2063(3245)
16 3r2v_A PB2 C-terminal subunit; 22.5 34 0.0012 33.2 1.9 39 434-477 47-85 (216)
17 3oja_A Leucine-rich immune mol 22.1 5.4E+02 0.018 27.9 11.8 7 520-526 328-334 (487)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=8.2e-09 Score=115.16 Aligned_cols=407 Identities=16% Similarity=0.142 Sum_probs=218.4
Q ss_pred hhHHHhHHHHHhcCChHHHHHHHHHHHhcccccchhchHHHHHHHHHHHHhhcccccchhhhhHHHHHhhhccCcCcHHH
Q 004280 8 EAALNQAEALINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDMRRGKFAKDGLIQYRIVCQQVNVTSLEE 87 (764)
Q Consensus 8 EnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~~~lE~Im~~~ieLCVel~kg~~aKdgL~QYk~~~Q~~nv~SLe~ 87 (764)
++.+..|+.|.. |++++|++.|..+-..-|.-.=..+.-.+....+.||++.+.-. .-..++..++...|. +-.
T Consensus 18 ~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~---~l~e~i~~Lskkr~q--lk~ 91 (445)
T 4b4t_P 18 KEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWD---DLNEQLTLLSKKHGQ--LKL 91 (445)
T ss_dssp ----------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHH---HHHHHHHHHHTTTTT--SHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhhh--hHH
Confidence 567888888855 89999999998877654322111333445556678999887632 223344444543321 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCChhHHHHHhhcCccccCcccccccchHHHHHHHHHHHHHHHhcc
Q 004280 88 VIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRN 167 (764)
Q Consensus 88 Vir~fl~lae~K~~~a~~ka~~~~~~~~~dDLE~~~tPE~lLLsavs~e~~~drtdr~~vtPwlkFLWEsYR~vLdiLRn 167 (764)
.+.+.+..+..-+... .+++ -+++-.++++|+.
T Consensus 92 ai~~~V~~~~~~l~~~-------------------~~~d----------------------------~~~~~~~i~~l~~ 124 (445)
T 4b4t_P 92 SIQYMIQKVMEYLKSS-------------------KSLD----------------------------LNTRISVIETIRV 124 (445)
T ss_dssp HHHHHHHHHHHHHHHH-------------------CTTH----------------------------HHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHhcC-------------------Cchh----------------------------HHHHHHHHHHHHH
Confidence 3334443332222110 0000 0122233344431
Q ss_pred c--hh--hHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCChhHHHHHHHHHHHhHHHHHh
Q 004280 168 N--SK--LEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATD 243 (764)
Q Consensus 168 N--sk--LE~lY~~ta~~Af~FClkY~RktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~ 243 (764)
- .| ||... |+=...+|.=|....++...+++|..=.... + + ..+..+ =++.-+.|+.....
T Consensus 125 vte~kiflE~er---arl~~~La~i~e~~g~~~eA~~iL~~l~~Et--~--~----~~~~~~----kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 125 VTENKIFVEVER---ARVTKDLVEIKKEEGKIDEAADILCELQVET--Y--G----SMEMSE----KIQFILEQMELSIL 189 (445)
T ss_dssp SSSCCCCCCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--C--S----SSCHHH----HHHHHHHHHHHHHH
T ss_pred HhccchHHHHHH---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--H--h----cccHHH----HHHHHHHHHHHHHH
Confidence 1 11 22222 2223445666777788888888776522111 1 1 012223 45666679999999
Q ss_pred hhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCHHHHHHHHHHH
Q 004280 244 LQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSV 323 (764)
Q Consensus 244 LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~v 323 (764)
.+-|..|--.+.=|..-. ...+|.|.+++.||.-++.++..-++|+=-+-.|+-.|.... -.-.+......-..+
T Consensus 190 ~~d~~~a~~~~~ki~~~~--~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~---~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKT--FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA---IKSDEAKWKPVLSHI 264 (445)
T ss_dssp HTCHHHHHHHHHHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc---ccCCHHHHHHHHHHH
Confidence 999999987766654321 234566899999999999999999999865555444443322 112333444445555
Q ss_pred HHHhhccCcCCCCCcchhhhhhhhHhHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCCcccccHHHHHHHHHHhh
Q 004280 324 VLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLEH 403 (764)
Q Consensus 324 lLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~vl~~a~~~v~~Ly~lLE~ 403 (764)
|+.++--|.++.. ..-++.+..-. .++.+|.-..|++......+..+ |.+...|. .
T Consensus 265 v~~~iLa~~~~~~--------------~~ll~~~~~~~-----~~~~l~~~~~L~k~f~~~~L~~~--~~~~~~~~---~ 320 (445)
T 4b4t_P 265 VYFLVLSPYGNLQ--------------NDLIHKIQNDN-----NLKKLESQESLVKLFTTNELMRW--PIVQKTYE---P 320 (445)
T ss_dssp HHHHHHSSCSSTT--------------HHHHHSHHHHS-----SCHHHHHHHHHHHHHHHCCSSSH--HHHHHHTC---S
T ss_pred HHHHHhCCCCchH--------------HHHHHHHhhcc-----cccccHHHHHHHHHHHhchHhhh--HHHHHHHH---H
Confidence 5555555553321 01111111111 12356777788877777666543 22222221 1
Q ss_pred cCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHH
Q 004280 404 EFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVE 483 (764)
Q Consensus 404 ~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iE 483 (764)
.+.|. .....+.....++..|.+.++...|..+|+.|++|++++|.+++. .+..++|
T Consensus 321 ~L~~~----------------------~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~-l~~~evE 377 (445)
T 4b4t_P 321 VLNED----------------------DLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD-LTESQTE 377 (445)
T ss_dssp STTTC----------------------CSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT-SCHHHHH
T ss_pred Hhccc----------------------chhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC-cCHHHHH
Confidence 11110 000112233567889999999999999999999999999999987 5899999
Q ss_pred HHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHhhHHHHHHHHHHHHHhhcCC
Q 004280 484 KISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRDHLTIFAQSLNKVRALIYP 538 (764)
Q Consensus 484 k~lv~a~~~~~l~vrIDH~~~~I~F~~~~~~s~~ir~qL~~la~~L~~~~~~i~p 538 (764)
.+|.+++..|.|..+||..+|+|+|+...-++ ..|+.|+..+...++.|+.
T Consensus 378 ~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~----~~l~~W~~~i~~l~~~v~k 428 (445)
T 4b4t_P 378 TYISDLVNQGIIYAKVNRPAKIVNFEKPKNSS----QLLNEWSHNVDELLEHIET 428 (445)
T ss_dssp HHHHHHHHHTSSCCEEETTTTEEEC------------------------------
T ss_pred HHHHHHHHCCCEEEEEcCCCCEEEECCCCChH----HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999754333 4566666666666665543
No 2
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=5.9e-07 Score=95.15 Aligned_cols=392 Identities=13% Similarity=0.104 Sum_probs=215.5
Q ss_pred ChhhHHHhHHHHHhcCChHHHHHHHHHHHhcccccch-----------hchHHHHHHHHHHHHhhcccccchhhhhHHHH
Q 004280 6 KPEAALNQAEALINVGQKQDALQVLHDLITSKRHRAW-----------QKILEKIMFKYVELCVDMRRGKFAKDGLIQYR 74 (764)
Q Consensus 6 kPEnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w-----------~~~lE~Im~~~ieLCVel~kg~~aKdgL~QYk 74 (764)
-|..-|..|+.|++.|++..|++.+..++..-+.... ....|........+|.++.+-..|.+-+.+-.
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4889999999999999999999999999986433211 13456677778888887776444443333333
Q ss_pred HhhhccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCChhHHHHHhhcCccccCcccccccchHHHHH
Q 004280 75 IVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFL 154 (764)
Q Consensus 75 ~~~Q~~nv~SLe~Vir~fl~lae~K~~~a~~ka~~~~~~~~~dDLE~~~tPE~lLLsavs~e~~~drtdr~~vtPwlkFL 154 (764)
.+.++.+-...+..++..++ .+.... +.. .-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~-------------------------------------~~~~~~--~~~---------~~a 114 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIE-------------------------------------KFEQVP--DSL---------DDQ 114 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHH-------------------------------------HHCSCC--SCH---------HHH
T ss_pred HHHHHccchHHHHHHHHHHH-------------------------------------HHHhCC--CCH---------HHH
Confidence 33333322222222222221 111110 000 011
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHhhccccCCCCCCCChhHHHHHHHHH
Q 004280 155 WETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTR 234 (764)
Q Consensus 155 WEsYR~vLdiLRnNskLE~lY~~ta~~Af~FClkY~RktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetR 234 (764)
-+.|+.++++.+.+.. +.+++.+ -...|.-|--..+|....+.+..-+....+.. ..|. .++.-
T Consensus 115 ~~~~~~~~~~~~~~~~-~~~~~~~---~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--------~~~~----~~~~~ 178 (434)
T 4b4t_Q 115 IFVCEKSIEFAKREKR-VFLKHSL---SIKLATLHYQKKQYKDSLALINDLLREFKKLD--------DKPS----LVDVH 178 (434)
T ss_dssp HHHHHHHHHHHHHSSC-CSSHHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--------CSTH----HHHHH
T ss_pred HHHHHHHHHHHHHhCc-cHHHHHH---HHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--------cchh----HHHHH
Confidence 2234555555543321 1111111 12223333333344445544444332222211 1233 45666
Q ss_pred HHhHHHHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCHH
Q 004280 235 FEQLKVATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLK 314 (764)
Q Consensus 235 f~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~e 314 (764)
+.+..+-..++-|..|-....-+-.+.. .-+..|..++.+|..+..+++..++|.=-.-.+...|.............
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~ 256 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAAN--SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYE 256 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhh--cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 7788888999999998776665544422 12233588999999999999999998877777777776655433322222
Q ss_pred HHHHHHHHHHHHhhccCcCCCCCcchhhhhhhhHhHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCCcccccHHH
Q 004280 315 DLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEV 394 (764)
Q Consensus 315 e~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~vl~~a~~~v 394 (764)
.........+++....+... .....+. +....+......+|.-..|.......+ +
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~--------l 311 (434)
T 4b4t_Q 257 KACQVLKYMLLSKIMLNLID--------------DVKNILN---AKYTKETYQSRGIDAMKAVAEAYNNRS--------L 311 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHH--------------HHHHHHH---CSSSSTTCCCHHHHHHHHHHHHHHHTC--------H
T ss_pred HHHHHHHHHHHHHHhccchh--------------HHHhHHH---HHHHHHHhcchhhhHHHHHHHHHHhhh--------H
Confidence 22222222222222212100 0011111 111111111122233333332222211 1
Q ss_pred HHHHHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhcc
Q 004280 395 KDLYNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMI 474 (764)
Q Consensus 395 ~~Ly~lLE~~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~ 474 (764)
......++ .....+. .++.+..++..+...+..+.+.+++..|++|+++++.+.+
T Consensus 312 ~~~~~~~~-------------~~~~~~~------------~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l 366 (434)
T 4b4t_Q 312 LDFNTALK-------------QYEKELM------------GDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKII 366 (434)
T ss_dssp HHHHHHHH-------------HTHHHHT------------CSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHH
T ss_pred HHHHHHHH-------------HHHHHHc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 11111111 1111122 2567788899999999999999999999999999999887
Q ss_pred CCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCC
Q 004280 475 PFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLE 514 (764)
Q Consensus 475 ~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~~~ 514 (764)
. .+..++|+.|.+++..|.|..+||+..|+|.|...+-+
T Consensus 367 ~-~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~ 405 (434)
T 4b4t_Q 367 G-LDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQ 405 (434)
T ss_dssp T-CCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC-----
T ss_pred C-cCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcch
Confidence 6 58899999999999999999999999999999875544
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.96 E-value=3.6e-07 Score=100.88 Aligned_cols=291 Identities=12% Similarity=0.096 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhhCchhHHH-----HHHHHHH---------HHHHHHhhccccCCCC
Q 004280 154 LWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFR-----RLCEIIR---------NHLLNLNKYRDQRDRP 219 (764)
Q Consensus 154 LWEsYR~vLdiLRnNskLE~lY~~ta~~Af~FClkY~RktEFr-----RLce~LR---------~Hl~~~~K~~~~~~~~ 219 (764)
.=..-|+++|.+-+.+.-..+--.++..++++|. .+|++-+| |||+++- ..+..+.++-..
T Consensus 57 ~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~---- 131 (394)
T 3txn_A 57 AAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKK---- 131 (394)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----
Confidence 3455677888886654445666788999999998 45566667 7888654 223333333211
Q ss_pred CCCChhHHHHHHHHHHHhHHHHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHH-HcCchHHHHHHHH
Q 004280 220 DLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFW-ISSSHLYHAYAWF 298 (764)
Q Consensus 220 ~ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFw-~s~n~LfHA~A~~ 298 (764)
+.|+ ..-||.-+....+...++-+..+=.++.---+.-+- -+|.|.+++.+..--..++. ..++|-=-+-.++
T Consensus 132 -~dd~---~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a--i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 132 -LDDK---NLLVEVQLLESKTYHALSNLPKARAALTSARTTANA--IYCPPKVQGALDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp -SSCT---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -cccc---hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHH
Confidence 1222 567889999999999999988886666555444332 24779999999988888888 7777754333333
Q ss_pred HHHhhhhhhCCCCCHHHHHHHHHHHHHHhhccCcCCCCCcchhhhhhhhHhHHHHHHHhhCCCCCCCccccccccHHHHH
Q 004280 299 KLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLL 378 (764)
Q Consensus 299 k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll 378 (764)
. -.+.++..-+. .....+- -.=|++|++++. |....++
T Consensus 206 e---af~~f~~~~~~-~~~~~lk-----------------------------YlvL~aLl~~~r---------~el~~~l 243 (394)
T 3txn_A 206 E---AFEGFDSVDSV-KALTSLK-----------------------------YMLLCKIMLGQS---------DDVNQLV 243 (394)
T ss_dssp H---HHHHHTTTCHH-HHHHHHH-----------------------------HHHHHHHHTTCG---------GGHHHHH
T ss_pred H---HHhcccccccH-HHHHHHH-----------------------------HHHHHHHHcCCH---------HHHHHHh
Confidence 3 33333321111 1111112 222344444331 1111111
Q ss_pred HHHHHcCCcccccHHHHHHHHHHhh-cCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHH
Q 004280 379 SELVSKGVMSCATQEVKDLYNLLEH-EFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQ 457 (764)
Q Consensus 379 ~~l~~~~vl~~a~~~v~~Ly~lLE~-~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~q 457 (764)
. ......+.+|++..+.+++.. ....+. ....+|..... .-..|+.+..++..|.+-|..+.+.+
T Consensus 244 ~---~~~~~~~~~pei~~l~~L~~a~~~~dl~---~f~~iL~~~~~--------~l~~D~~l~~h~~~L~~~Ir~~~L~~ 309 (394)
T 3txn_A 244 S---GKLAITYSGRDIDAMKSVAEASHKRSLA---DFQAALKEYKK--------ELAEDVIVQAHLGTLYDTMLEQNLCR 309 (394)
T ss_dssp H---SHHHHTTCSHHHHHHHHHHHHHHTTCHH---HHHHHHHHSTT--------TTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---cccccccCCccHHHHHHHHHHHHhCCHH---HHHHHHHHHHH--------HHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 1 111122356777666666552 111111 11222222111 01137888999999999999999999
Q ss_pred HHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC
Q 004280 458 VSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG 512 (764)
Q Consensus 458 lSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~ 512 (764)
++.-|++|+|+++.+.+. .+..++|..|+.++..|.|..+||+.+|+|.|...+
T Consensus 310 i~~pYsrIsl~~iA~~l~-ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 310 IIEPYSRVQVAHVAESIQ-LPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEET 363 (394)
T ss_dssp HHTTCSEEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-
T ss_pred HhHhhceeeHHHHHHHHC-cCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCc
Confidence 999999999999999877 499999999999999999999999999999998654
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=6.4e-06 Score=91.24 Aligned_cols=223 Identities=15% Similarity=0.146 Sum_probs=143.2
Q ss_pred HHHHHHHhHHHHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCC
Q 004280 230 YLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNK 309 (764)
Q Consensus 230 ~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~ 309 (764)
-++.-|.++.+++..+-|..|=..+.-+..++. ..+.|..+..|....+.+.|..++|.=+|-.++. ....+.
T Consensus 167 kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~---~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e---~~~t~~- 239 (429)
T 4b4t_R 167 KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE---KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVD---SLATFT- 239 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHH---HHHHSC-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHH---HhccCC-
Confidence 578889999999999999999888888877754 3466788888888888899988887655443333 332211
Q ss_pred CCCHHHHHHHHHHHHHHhhccCcCCCCCcchhhhhhhhHhHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHc----C
Q 004280 310 NLSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSK----G 385 (764)
Q Consensus 310 ~~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~----~ 385 (764)
....-.....|-..+|+++..+. |..|...++.. +
T Consensus 240 ~~e~~~~~~~~~y~~l~al~~~~-----------------------------------------r~~l~~~v~~~~~~~~ 278 (429)
T 4b4t_R 240 SIELTSYESIATYASVTGLFTLE-----------------------------------------RTDLKSKVIDSPELLS 278 (429)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTC-----------------------------------------HHHHHHSSSSSHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhcCC-----------------------------------------HHHHHHHHhcCHHHHh
Confidence 11111222233333333333332 22221111110 0
Q ss_pred CcccccHHHHHHHHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhee
Q 004280 386 VMSCATQEVKDLYNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMM 465 (764)
Q Consensus 386 vl~~a~~~v~~Ly~lLE~~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti 465 (764)
++ .-.|.+..+.+++.. |.--....-...++..... ....|+.+..+++.|.+-|..+.+.|+++.|++|
T Consensus 279 ~l-~~~p~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~--------~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I 348 (429)
T 4b4t_R 279 LI-STTAALQSISSLTIS-LYASDYASYFPYLLETYAN--------VLIPCKYLNRHADFFVREMRRKVYAQLLESYKTL 348 (429)
T ss_dssp GG-GSHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHST--------TTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred hc-cCChhHHHHHHHHHH-HHhccHHHHHHHHHHHHHh--------hhccCHHHHHHHHHHHHHHHHHHHHHHhHHhcee
Confidence 11 112444444444331 1111111111112222211 1123678899999999999999999999999999
Q ss_pred ehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecC
Q 004280 466 RIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL 511 (764)
Q Consensus 466 ~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~ 511 (764)
+|+++.+.+. .|..++|+.|++.+..|.|..+||..+|+|.|+..
T Consensus 349 ~l~~mA~~l~-~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 349 SLKSMASAFG-VSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp EHHHHHHHHT-SCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred eHHHHHHHhC-cCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 9999999876 68999999999999999999999999999999853
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=8.4e-06 Score=89.60 Aligned_cols=252 Identities=14% Similarity=0.129 Sum_probs=134.2
Q ss_pred HHHHHHhHHHHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCC
Q 004280 231 LDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKN 310 (764)
Q Consensus 231 LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~ 310 (764)
+-.+..-...-..++--.+|=..++.+-++|.... .+-|.+.+.||+-.+..+-.-++|.=.......|+.... ...+
T Consensus 127 l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~-~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~-~~~~ 204 (393)
T 4b4t_O 127 LLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD-SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE-PSTS 204 (393)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSSS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC-CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc-cccc
Confidence 33333333333455666778788888888877543 356899999999999999888776322222222222111 2356
Q ss_pred CCHHHHHHHHHHHHHHhhccCcCCCCCcchhhhhhhhHhHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHcCCcccc
Q 004280 311 LSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCA 390 (764)
Q Consensus 311 ~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~pk~~~~~iPtR~~Ll~~l~~~~vl~~a 390 (764)
++.++...+|..++++||.-|.... + +.||..+... ..+ -
T Consensus 205 ~~~~~~~~~a~~l~~~all~~~i~~---f---------------~eLL~~p~i~--~L~--------------------~ 244 (393)
T 4b4t_O 205 ITLAERQQLAYDLSISALLGDKIYN---F---------------GELLHHPIME--TIV--------------------N 244 (393)
T ss_dssp CSHHHHHHHHHHHHHHHHHCCSSCS---T---------------HHHHHSCCTT--SSC--------------------S
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCC---h---------------HHHhCChHHH--Hhh--------------------c
Confidence 8899999999999999999886432 1 1244433210 000 1
Q ss_pred cHHHHHHHHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHHH--HHHhheeehh
Q 004280 391 TQEVKDLYNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQV--SEVYQMMRIE 468 (764)
Q Consensus 391 ~~~v~~Ly~lLE~~f~Pl~l~~k~~p~l~~l~~~~~~~~~~~~~~~~~~~~Y~~~L~~vi~~Rll~ql--SqvY~ti~i~ 468 (764)
+|+...+|++|+ -|...++.. +...+..+.+ ..|.+..+...+.+-+-...+.++ +..|.+|+++
T Consensus 245 ~~~~~~l~~Ll~-~f~~g~~~~----f~~~~~~~~~--------~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~ 311 (393)
T 4b4t_O 245 DSNYDWLFQLLN-ALTVGDFDK----FDSLIKVQIS--------KIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFE 311 (393)
T ss_dssp SSSTTHHHHHHH-HHHHTCHHH----HHHHCCHHHH--------HSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHH
T ss_pred CCchHHHHHHHH-HHhcCCHHH----HHHHHHHhhh--------hCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHH
Confidence 233333444443 122221111 0011100000 024445555554444433334343 3568899999
Q ss_pred hhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecC---CCCch---hHhhHHHHHHHHHHHHHhhcCC
Q 004280 469 SLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL---GLESD---GLRDHLTIFAQSLNKVRALIYP 538 (764)
Q Consensus 469 ~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~---~~~s~---~ir~qL~~la~~L~~~~~~i~p 538 (764)
.+.+.+. .+..++|.+|++++..|.|..+||+.+|+|.|... .++.+ .+++.|..+...+......|+.
T Consensus 312 ~ia~~l~-i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~ 386 (393)
T 4b4t_O 312 DISKATH-LPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEA 386 (393)
T ss_dssp HHHHHHT-CCHHHHHHHHHHHHHHSCSSSCEETTTTEECC------------------------------------
T ss_pred HHHHHhC-cCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 47899999999999999999999999999999752 33332 3567777777777777776654
No 6
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.75 E-value=3.6e-05 Score=67.46 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 004280 445 ALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (764)
Q Consensus 445 ~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~ 510 (764)
.|++-++-..|..+|+.|++|++++|.+++. .+..++|+.|.+.+.++.|..+||..+|+|.|..
T Consensus 11 ~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~-ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~ 75 (84)
T 1ufm_A 11 ILDRAVIEHNLLSASKLYNNITFEELGALLE-IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFET 75 (84)
T ss_dssp CCCHHHHHHHHHHHHHSCSEEEHHHHHHHTT-SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECC
T ss_pred HHHHHHHHHHHHHHHHhcCeeeHHHHHHHHC-cCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCC
Confidence 3455666667778999999999999999987 5799999999999999999999999999999975
No 7
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00034 Score=79.57 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecC
Q 004280 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL 511 (764)
Q Consensus 441 ~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~ 511 (764)
.-+..|+..++...|..+|..|.+|++..+...+.+.+..++|.++.+++.+|.|...|||..|.|.|...
T Consensus 378 ~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~ 448 (523)
T 4b4t_S 378 QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTEL 448 (523)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCcc
Confidence 35778889999999999999999999999998877767789999999999999999999999999999754
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=95.87 E-value=0.013 Score=58.81 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--hheeehhhhhhccC-----CCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec-CCCC
Q 004280 443 IPALEKLVTLRVLQQVSEV--YQMMRIESLSQMIP-----FFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN-LGLE 514 (764)
Q Consensus 443 ~~~L~~vi~~Rll~qlSqv--Y~ti~i~~L~~l~~-----f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~-~~~~ 514 (764)
+..|+.+++..++..++.. |+.|+++.+..-.. -.|..++|-++++++.+|.|.-.|||..|++.+.. +|||
T Consensus 118 l~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP 197 (203)
T 3t5x_A 118 LEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFP 197 (203)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCCCC
Confidence 5667778888888888864 99999999886443 24899999999999999999999999999999986 6887
Q ss_pred c
Q 004280 515 S 515 (764)
Q Consensus 515 s 515 (764)
.
T Consensus 198 ~ 198 (203)
T 3t5x_A 198 P 198 (203)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=90.67 E-value=0.23 Score=55.72 Aligned_cols=73 Identities=8% Similarity=0.113 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHH----HHHh--heeehhhhhhccCC--------------------CChHHHHHHHHHHHhcCcee
Q 004280 443 IPALEKLVTLRVLQQV----SEVY--QMMRIESLSQMIPF--------------------FDFAVVEKISVEAVKHNFIA 496 (764)
Q Consensus 443 ~~~L~~vi~~Rll~ql----SqvY--~ti~i~~L~~l~~f--------------------~~~~~iEk~lv~a~~~~~l~ 496 (764)
+..|+.++++.++..+ +-.| +.|+++.+..-+.+ .+..++|-++++++..|.|.
T Consensus 335 lerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~Ik 414 (455)
T 3t5v_B 335 LEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLR 414 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeE
Confidence 4456667777777766 6667 79999988754332 47889999999999999999
Q ss_pred EEEeccCCeEEEecC-----CCCc
Q 004280 497 MKIDHMRGVVVFCNL-----GLES 515 (764)
Q Consensus 497 vrIDH~~~~I~F~~~-----~~~s 515 (764)
-.|||..|+|.+... +||.
T Consensus 415 GyIsh~~~~lVlSK~~~~~~pFP~ 438 (455)
T 3t5v_B 415 ANCFPQLQLCVVKKTTMIQEIVPP 438 (455)
T ss_dssp EEEETTTTEEEECCCSCGGGTSCC
T ss_pred EEEecCCCEEEECCCCCCCCCCCC
Confidence 999999999999976 7874
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=88.31 E-value=1 Score=45.85 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=53.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 004280 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (764)
Q Consensus 436 ~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~ 510 (764)
.+.+.-.++.|-..+=..++..+++.|.+|+++.+.+++-|.|..+++.++- ++| .. |+ .|+|+|.+
T Consensus 162 ~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~---~~g-w~--i~--dg~i~F~~ 228 (229)
T 4b0z_A 162 FPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE---ERG-WD--IR--DGVIYFPK 228 (229)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH---HHT-CE--EE--TTEEECC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH---HcC-CE--Ee--CCEEecCC
Confidence 3455556677777777788899999999999999999999999999999984 444 33 33 88999964
No 11
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=87.71 E-value=10 Score=38.58 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=48.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 004280 438 QLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (764)
Q Consensus 438 ~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~ 510 (764)
++..-++.+.+.|=.+++..++..|++|+++.+.+++-+.+..+++.++.. .| -.+| .+|.|.|.+
T Consensus 126 ~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~---~G---W~vd-~~g~I~~~n 191 (226)
T 1rz4_A 126 DLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSK---YG---WSAD-ESGQIFICS 191 (226)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHH---HT---CEEC-C--CEECCC
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHH---CC---CEEC-CCccEEeCC
Confidence 444444555566666788899999999999999999988899999999964 23 3445 567886643
No 12
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=83.79 E-value=1.5 Score=42.77 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=46.2
Q ss_pred HhheeehhhhhhccCCCChHHHHHHHH-HHHhcCceeEEEeccCCeEEEec
Q 004280 461 VYQMMRIESLSQMIPFFDFAVVEKISV-EAVKHNFIAMKIDHMRGVVVFCN 510 (764)
Q Consensus 461 vY~ti~i~~L~~l~~f~~~~~iEk~lv-~a~~~~~l~vrIDH~~~~I~F~~ 510 (764)
...+|+++.+.+-+...+..++|.+|| +|+..|.|..+||..+++|+...
T Consensus 106 ~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~ 156 (169)
T 3chm_A 106 SNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPF 156 (169)
T ss_dssp HCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEE
T ss_pred hCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEe
Confidence 378999999999888777999999999 99999999999999999999874
No 13
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.87 E-value=7.2 Score=40.70 Aligned_cols=70 Identities=13% Similarity=0.263 Sum_probs=52.5
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC
Q 004280 435 PEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG 512 (764)
Q Consensus 435 ~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~I~F~~~~ 512 (764)
|.+.|+-+++-|-..+=..++.++.+.|.+|+++.+.+++-|.+..++..|+- .+| ..+ ..|.|+|....
T Consensus 170 p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~---~~g-W~~----~~~~v~F~~~~ 239 (274)
T 4b4t_T 170 NISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFAL---ERN-WPI----VNSKVYFNNQS 239 (274)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHH---HTT-CCC----CSSCCCC----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHH---HcC-CEE----eCCEeEECCcc
Confidence 34556666777777777788889999999999999999999999999999984 444 333 47888897643
No 14
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Probab=52.73 E-value=1.3e+02 Score=29.20 Aligned_cols=141 Identities=11% Similarity=0.083 Sum_probs=92.5
Q ss_pred cchhhHHHHHHHHHHHHHHH-HhhCchhHHHHHHHHHHHHHHHHhh--ccccCCCCCCCChhHHHHHHHHHHHhHHHHHh
Q 004280 167 NNSKLEALYAMTAHRAFQFC-KQYKRTTEFRRLCEIIRNHLLNLNK--YRDQRDRPDLSSPESLQLYLDTRFEQLKVATD 243 (764)
Q Consensus 167 nNskLE~lY~~ta~~Af~FC-lkY~RktEFrRLce~LR~Hl~~~~K--~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~ 243 (764)
.-.++|..+..|-..-=.+| ..-+-. -...++..|...+..+.+ +.+..|.. ++++..--.|++-|-.|+++
T Consensus 13 ~~~~IE~~~k~Il~~~a~~L~~~~~~~-~~~~~~~~l~~~i~~a~~~A~~~~~N~l-~~~~~yy~~Yf~MR~~Q~~i--- 87 (177)
T 3kmi_A 13 VQKKLQEEVSIVLIDIADIIVNPKKEN-GYSRDLYTLNSLIDSSISETYDNINNTL-LSDTRFFLEHMDIIKSQRDI--- 87 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCC-SHHHHHHHHHHHHHHHHHHHHHTGGGSC-HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccc-cHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccCchHHHHHHHHHHHHHHH---
Confidence 34677888888888877888 444322 234455555555555432 12222232 57889999999999999887
Q ss_pred hhcHHHHHHHHhHHHHHhhhhcC-CCchhHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhhhhhhCCCCCHHHHHHHHHH
Q 004280 244 LQLWQEAFYSVEDIHGLMCMVKK-TPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASS 322 (764)
Q Consensus 244 LeLWqEAFrsvEDI~~Lm~~skk-~pkp~~ma~YYekLa~IFw~s~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~ 322 (764)
+++++..++-... +|-..++|.|.++++.-+-..|+...=-.-+.....-++...=+-|.+|+..=|+.
T Consensus 88 ----------L~~m~~~i~~i~~~~~q~~~iA~~~~~~a~~~~e~n~a~~ll~~L~~l~~~fr~~~LP~TReEFE~RA~L 157 (177)
T 3kmi_A 88 ----------LENLYSYVSQLNSTPPQAHILSAFIHKIGYTEFEAETGNLLLEELKRLMISMKNQPLPVDRTEFENRAIL 157 (177)
T ss_dssp ----------HHHHHHHHTTCSCCCHHHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 7777777664444 45578899999999986665555444434444555556666667788887765543
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.62 E-value=7e+02 Score=34.73 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=12.8
Q ss_pred HHHHHHHHhhHhhHHHHhhhhh
Q 004280 666 LEVELSRQRHDGDLREKYRLSR 687 (764)
Q Consensus 666 ~~~~~ak~~h~~~~~~k~RL~r 687 (764)
++++..+++++..+.+|++|..
T Consensus 2042 ~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2042 KSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666543
No 16
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=22.52 E-value=34 Score=33.25 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=30.5
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHhheeehhhhhhccCCC
Q 004280 434 VPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFF 477 (764)
Q Consensus 434 ~~~~~~~~Y~~~L~~vi~~Rll~qlSqvY~ti~i~~L~~l~~f~ 477 (764)
+|...-.||.- .++-+|+|+.-|..|.+.+.+.+|+||.
T Consensus 47 vPka~r~qYSG-----FvRtlfqQMRDvlgtf~T~QiIKLlPFa 85 (216)
T 3r2v_A 47 VPKAIRSQYSG-----FVRTLFQQMRDVLGTFDTTQIIKLLPFA 85 (216)
T ss_dssp SCTTTHHHHHH-----HHHHHHHHHHHSTTCCCHHHHHHHGGGG
T ss_pred chHHHhhhhhH-----HHHHHHHHHHHHHccchhhhhhhhcccc
Confidence 44455566653 3456789999999999999999999985
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.08 E-value=5.4e+02 Score=27.95 Aligned_cols=7 Identities=0% Similarity=-0.558 Sum_probs=3.0
Q ss_pred hHHHHHH
Q 004280 520 DHLTIFA 526 (764)
Q Consensus 520 ~qL~~la 526 (764)
..+..|+
T Consensus 328 ~Eve~L~ 334 (487)
T 3oja_A 328 LECEREN 334 (487)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3444444
Done!