Your job contains 1 sequence.
>004281
MEDRRSELVVDEFEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKL
KNNGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWAN
CNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSN
MVNLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFA
DTQSSFPYLHSQHLNQPPISWRNIDQEQYHRMQQQYLYLQQLRNQRSESQHPIQQNGSIP
SKLMGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVLGKVGK
QSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQI
DGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDI
EKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQK
VIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVE
LATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATM
DILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYV
IQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004281
(764 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 1193 2.2e-131 3
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 917 4.3e-94 2
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 877 8.6e-88 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 805 5.1e-83 2
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 814 4.1e-81 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 755 7.3e-75 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 709 2.9e-72 2
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 713 2.1e-70 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 620 2.0e-63 2
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 553 6.9e-57 2
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 560 2.3e-56 2
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 553 1.9e-53 1
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 496 1.3e-44 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 485 4.9e-43 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 480 1.2e-42 1
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 480 1.2e-42 1
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 478 2.0e-42 1
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 478 2.0e-42 1
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 480 3.5e-42 2
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 449 7.9e-42 1
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 468 1.1e-41 2
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 478 1.2e-41 2
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 469 1.5e-41 1
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 468 1.5e-41 2
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 478 1.6e-41 2
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 478 1.7e-41 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 476 1.7e-41 2
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 464 1.8e-41 3
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 468 2.6e-41 2
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 469 2.8e-41 2
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 473 3.2e-41 2
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 468 3.7e-41 2
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 468 4.6e-41 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 468 4.6e-41 2
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 468 4.7e-41 2
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 468 5.3e-41 2
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 462 7.9e-41 2
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 473 1.1e-40 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 461 1.9e-40 2
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 456 2.2e-40 1
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 462 3.5e-40 2
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 431 7.5e-40 1
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 456 1.2e-39 1
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 452 1.3e-39 1
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 462 1.8e-39 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 462 2.1e-39 2
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 445 2.2e-39 2
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 455 2.5e-39 2
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 446 4.3e-39 1
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 456 4.4e-39 2
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 443 4.8e-39 1
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 418 2.0e-38 1
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 402 1.1e-36 1
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 414 1.6e-35 1
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 400 7.1e-34 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 371 9.2e-31 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 360 1.4e-28 2
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 282 1.0e-23 1
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 291 1.3e-22 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 291 1.3e-22 1
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 293 3.7e-22 2
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 300 7.2e-22 2
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 233 1.9e-18 1
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 228 2.3e-15 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 231 3.4e-15 2
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 230 3.5e-15 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 210 2.4e-14 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 209 3.1e-14 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 201 3.1e-13 1
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 210 5.1e-13 4
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 203 7.7e-13 1
WB|WBGene00004240 - symbol:puf-4 species:6239 "Caenorhabd... 138 3.3e-12 3
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 197 3.3e-12 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 197 3.3e-12 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 195 5.5e-12 1
SGD|S000003851 - symbol:JSN1 "Member of the Puf family of... 197 2.3e-11 2
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 183 1.5e-10 1
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 173 1.3e-09 1
SGD|S000006246 - symbol:PUF2 "Member of the PUF protein f... 168 1.1e-08 2
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 172 1.3e-08 2
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 157 7.4e-08 1
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 154 1.6e-07 1
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 149 6.9e-07 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 148 1.0e-06 1
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 148 1.0e-06 1
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 1193 (425.0 bits), Expect = 2.2e-131, Sum P(3) = 2.2e-131
Identities = 246/390 (63%), Positives = 295/390 (75%)
Query: 387 GHESLNHINQSGKLLSNGHLCLSLSTP---NAGCFQIDGLNSW---PLSSD-SMDLKIIR 439
G+ES+ + K+L + L+ + AG +G W L+ D +M L +
Sbjct: 208 GNESVRKMCYPEKILMRSQMDLNTAKVIKYGAGDESQNG-RLWLQNQLNEDLTMSLNNLS 266
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
QPQKYNS+ E G+IY +AKDQHGCRFLQR SE DIE IF EIID+I ELM DPF
Sbjct: 267 LQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPF 326
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLV 554
GNYLVQKLLEVCNEDQRMQI+ +ITRK G L++IS TRAVQK++ET K E+ S++
Sbjct: 327 GNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISII 386
Query: 555 VSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKC 614
+S+LK GIV LIKN+NGNHV QRCL YLLP KFLF+A +CVELATDRHGCCV+QKC
Sbjct: 387 ISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKC 446
Query: 615 LTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLS 674
L +SEGEQ+ LVS+I SNAL+LSQDPFGNYV+Q+VFEL+L WAT +IL+QLEGNY +LS
Sbjct: 447 LGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELS 506
Query: 675 MQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHS 734
MQK SSNVVEKCLK DD+ RA II+ELI+ LDQVMLDPYGNYVIQAAL+QSKG VH+
Sbjct: 507 MQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAALKQSKGNVHA 566
Query: 735 ALVDAIRPHVPVLRTSPYGKKVLSCNSLKK 764
LVDAI+ ++ LRT+PYGKKVLS S KK
Sbjct: 567 LLVDAIKLNISSLRTNPYGKKVLSALSSKK 596
Score = 174 (66.3 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 95/393 (24%), Positives = 160/393 (40%)
Query: 358 VGKQSFPEKILTRSQ-GLNTLKAVKFGTVGGHESLNHI----NQSGKLLSNGHLCLSLST 412
V K +PEKIL RSQ LNT K +K+G G ES N NQ + L+ LSL
Sbjct: 212 VRKMCYPEKILMRSQMDLNTAKVIKYGA--GDESQNGRLWLQNQLNEDLTMSLNNLSLQP 269
Query: 413 PNAGCFQIDGLNSWPLSSDSMDLKIIRP--QPQKYNSVEEVTGRI--YL--MAKDQHGCR 466
+ L+ D + ++ + N +E + I Y+ + D G
Sbjct: 270 QKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFG-N 328
Query: 467 FLQRKISEGTLEDIEKIFVEIIDH----IVELMTDPFGNYLVQKLLEVCNEDQRMQIL-Q 521
+L +K+ E ED V I ++++ D G VQK++E ++ + I+
Sbjct: 329 YLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIIS 388
Query: 522 AITRKAGDLVRI--STRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCL 579
A+ L++ VQ+ ++ L P + + V L + +G V Q+CL
Sbjct: 389 ALKHGIVHLIKNVNGNHVVQRCLQYLL-PYCGKFLFEAAITHCVELATDRHGCCVLQKCL 447
Query: 580 LYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQ 639
Y E + L +N + L+ D G V+Q ++ ++ N LS
Sbjct: 448 GYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSM 507
Query: 640 DPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLS---MQKYSSNVVEKCLKYGDDERRA 696
+ VV+ +L I+ +L NYG L + Y + V++ LK A
Sbjct: 508 QKCSSNVVEKCLKLADDKHRARIIRELI-NYGRLDQVMLDPYGNYVIQAALKQSKGNVHA 566
Query: 697 HIIQELISNAHLDQVMLDPYGNYVIQAALQQSK 729
++ + N + + +PYG V+ +AL K
Sbjct: 567 LLVDAIKLN--ISSLRTNPYGKKVL-SALSSKK 596
Score = 115 (45.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 93/417 (22%), Positives = 170/417 (40%)
Query: 248 YL-HSQHLN--QPPISWRNIDQEXXXXXXXXXXXXXXXXXXXSESQHPIQQNGSIPSKLM 304
YL HSQ L+ Q P++WR+I++E H +Q ++P
Sbjct: 133 YLPHSQPLSHYQSPMTWRDIEEENFQRLKLQEEQYLSIN---PHFLH-LQSMDTVP---- 184
Query: 305 GRTMRQPCFEMPNRLEQSNQEQFW---DAYAVPRGINHLNSAF--SSTDCNPMHVLGK-V 358
RQ F+ R EQSN+ FW D R + + S D N V+
Sbjct: 185 ----RQDHFDY-RRAEQSNRNLFWNGEDGNESVRKMCYPEKILMRSQMDLNTAKVIKYGA 239
Query: 359 GKQSFPEKILTRSQGLNTLKAVKFGTVGGH-ESLNHINQS-GK---LLSNGHLCLSLS-- 411
G +S ++ ++Q LN + + + N I ++ GK L + H C L
Sbjct: 240 GDESQNGRLWLQNQ-LNEDLTMSLNNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRI 298
Query: 412 -TPNAG-----CFQ--IDGLNSWPLS--SDSMDLKIIRP--QPQKYNSVEEVTGRIYLMA 459
+ G F ID ++ + + + K++ + Q+ V +T + L+
Sbjct: 299 FSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLI 358
Query: 460 K---DQHGCRFLQRKISEGTLEDIEKIFVEIIDH-IVELMTDPFGNYLVQKLLEVCNEDQ 515
K D HG R +Q+ + E+ I + + H IV L+ + GN++VQ+ L+
Sbjct: 359 KISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYC 418
Query: 516 RMQILQAITRKAGDLVRISTRA-VQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHV 574
+ +A +L V + EQ +VS + + L ++ GN+V
Sbjct: 419 GKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYV 478
Query: 575 AQRCLLYLLPEYSKF-LFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKI 630
Q + L +++ F + + N EL+ + V++KCL ++ + R R++ ++
Sbjct: 479 LQY-VFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIREL 534
Score = 87 (35.7 bits), Expect = 2.2e-131, Sum P(3) = 2.2e-131
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 1 MEDRRSELVVDEFEKLLGEIPNATSGNTHS 30
M+ RR +DEFEKLLGEIP TSGN ++
Sbjct: 1 MDQRRGN-ELDEFEKLLGEIPKVTSGNDYN 29
Score = 77 (32.2 bits), Expect = 2.4e-130, Sum P(3) = 2.4e-130
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 59 KLKNNGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIE-PVSP 117
K+ + + + I ++ S+ IK++ Q LPDD++ T++F+E + GIP P SP
Sbjct: 21 KVTSGNDYNHFPICLSSSRSQSIKKVDQY---LPDDRAFTTSFSEANLHFGIPNHTPESP 77
Score = 44 (20.5 bits), Expect = 2.2e-131, Sum P(3) = 2.2e-131
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 150 LMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKLQ-VGYRQPVENFSGALP 208
L + S+ S ++ P +D+FD K LD +KLQ VGY + +
Sbjct: 80 LFINPSYHSPSNSPCVYDKFDSRK----------LDPVMFRKLQQVGYLPNLSSGISPAQ 129
Query: 209 NAHSLQGFRFLSNVPVP 225
H L + LS+ P
Sbjct: 130 RQHYLPHSQPLSHYQSP 146
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 917 (327.9 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 177/320 (55%), Positives = 238/320 (74%)
Query: 450 EVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLE 509
++ G +YLMAKDQHGCRFLQR EGT D IF E+I H+VELM DPFGNYL+QKLL+
Sbjct: 333 DIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLD 392
Query: 510 VCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGIVT 564
VC E+QR QI+ T + G L+RIS TR VQ+++ET++S +Q SLV +L+PG +
Sbjct: 393 VCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLD 452
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
LIK++NGNHV QRCL L E +KF+F A T C E+AT RHGCCV+QKC+ +S +QR
Sbjct: 453 LIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQRE 512
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
+L+++I+ N+L+L+QDPFGNY VQFV ELR+P A +L QL+G+Y LSMQK+SS++VE
Sbjct: 513 KLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVE 572
Query: 685 KCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHV 744
+CL + E R I++EL+S H DQ++ DPY N+VIQAAL +KG +H++LV+ IRPH
Sbjct: 573 RCLMHCP-ESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH- 630
Query: 745 PVLRTSPYGKKVLSCNSLKK 764
+LR +PY K++ S N LKK
Sbjct: 631 SILRNNPYCKRIFSRNLLKK 650
Score = 39 (18.8 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 199 PVENFSGALPNAHSLQGFRFLSNVPVPGVEF 229
P E +LPN +QG+ +L G F
Sbjct: 320 PTEICHPSLPNMCDIQGYVYLMAKDQHGCRF 350
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 171/321 (53%), Positives = 235/321 (73%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
V E G +Y MAKDQHGCRFLQ +G+ D IF E+I H+VELM DPFGNYL+QKL
Sbjct: 196 VSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKL 255
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGI 562
L+VCNE+QR QI+ +T + G L+RIS TR VQ+++E++K+ +Q SLV S+L+PG
Sbjct: 256 LDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGF 315
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQ 622
+ LI+++NGNHV QRCL L E ++F+F+ T C+++AT RHGCCV+QKC+ +S G Q
Sbjct: 316 LNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQ 375
Query: 623 RHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNV 682
R +LV++I+ N+L L+QDP+GNY VQFV ELR A +L QL+G+Y +LSMQK+SS++
Sbjct: 376 REKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHM 435
Query: 683 VEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRP 742
VE+CL + E R I++ELIS H D ++ DPY N+VIQAAL +KG +H+ LV+ IRP
Sbjct: 436 VERCLTHCP-ESRPQIVRELISVPHFDILIQDPYANFVIQAALAVTKGSLHATLVEVIRP 494
Query: 743 HVPVLRTSPYGKKVLSCNSLK 763
H +LR +PY K++ S N LK
Sbjct: 495 H-SILRNNPYCKRIFSRNLLK 514
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 805 (288.4 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 157/337 (46%), Positives = 234/337 (69%)
Query: 427 PLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVE 486
P++SD + KI + Y S+++V G IY + +DQHGCRFLQ+K+ E L+ E IF E
Sbjct: 689 PITSD-ISKKIDLIANKTYTSIDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKE 747
Query: 487 IIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKV 541
+ D+++ELMTDPFGNYL QKLLE CN+ QR+ I++ + D+VRIS TRAVQK+
Sbjct: 748 VCDYMLELMTDPFGNYLCQKLLEHCNDRQRLTIIEKV---GTDIVRISMNMHGTRAVQKM 804
Query: 542 IETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNN--CV 599
IE L +PEQ L+ SLK +V LI+++NGNHV Q+CL L P+ ++F++ A +++ C+
Sbjct: 805 IEYLTTPEQIQLIKRSLKDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCI 864
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
+AT RHGCCV+Q+C+ H+ Q+ +L+ ++ +N+L+L QDP+GNYVVQ+V +L
Sbjct: 865 AVATHRHGCCVLQRCIDHASESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLA 924
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNY 719
++ + G+ L+ QK+SSNVVEKCL D R ++IQE+I +L ++ DPY NY
Sbjct: 925 TEMAKRFVGHVPILATQKFSSNVVEKCLHVADAITRGYLIQEVIDYDNLLHLLQDPYANY 984
Query: 720 VIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKV 756
VIQ +L S+ H+ LV+AIRPH+P+L+ +PYGK++
Sbjct: 985 VIQTSLTISEPHQHTKLVEAIRPHLPLLKNTPYGKRI 1021
Score = 202 (76.2 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 59/269 (21%), Positives = 134/269 (49%)
Query: 495 MTDPFGNYLVQKLLEVCNEDQRM--QILQAITRKAGDLVRISTRAVQKVIETLKSPEQFS 552
+TDP + + +K+ + N+ Q++ +I D + R +QK +E +S Q +
Sbjct: 686 ITDPITSDISKKIDLIANKTYTSIDQVMGSIYPLCRD--QHGCRFLQKKLE--ESDLQLT 741
Query: 553 -LVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVI 611
++ + ++ L+ + GN++ Q+ L + + + + V ++ + HG +
Sbjct: 742 EIIFKEVCDYMLELMTDPFGNYLCQKLLEHCNDRQRLTIIEKVGTDIVRISMNMHGTRAV 801
Query: 612 QKCLTHSEGEQRHRLVSKITSNALI-LSQDPFGNYVVQFVFELRLPWATMDILDQL--EG 668
QK + + ++ +L+ + ++++ L QD GN+V+Q P I D + +G
Sbjct: 802 QKMIEYLTTPEQIQLIKRSLKDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDG 861
Query: 669 NYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQS 728
+ ++ ++ V+++C+ + + ++ +IQE+I+N+ + ++ DPYGNYV+Q L
Sbjct: 862 SCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIANSLV--LVQDPYGNYVVQYVLDLP 919
Query: 729 KGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
G+ + + HVP+L T + V+
Sbjct: 920 FQGLATEMAKRFVGHVPILATQKFSSNVV 948
Score = 196 (74.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 62/258 (24%), Positives = 117/258 (45%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTL-EDIEKIFVEIIDHIVELMTDPFGN 501
Q+ +E+V I ++ + HG R +Q+ I T E I+ I + D +V L+ D GN
Sbjct: 776 QRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPLIQDLNGN 835
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTR-----AVQKVIETLKSPEQFSLVVS 556
+++QK L + I A++ G + ++T +Q+ I+ ++ L+
Sbjct: 836 HVIQKCLNKLSPQDNQFIYDAVSSD-GSCIAVATHRHGCCVLQRCIDHASESQKLQLIQE 894
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+ +V L+++ GN+V Q L + + + + LAT + V++KCL
Sbjct: 895 VIANSLV-LVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFSSNVVEKCLH 953
Query: 617 HSEGEQRHRLVSKITS--NALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLS 674
++ R L+ ++ N L L QDP+ NYV+Q + P +++ + + L
Sbjct: 954 VADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISEPHQHTKLVEAIRPHLPLLK 1013
Query: 675 MQKYSSNVVEKCLKYGDD 692
Y + K +K G D
Sbjct: 1014 NTPYGKRIQNKIIKEGRD 1031
Score = 46 (21.3 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 37 RVSSNYILPPITVNSSKGPLAEKLKNNGNLDEGKILVNKSQQSPIKRIPQE-EAN-LPDD 94
R +SN LP T NSS + E N N++ N S + K+ PQ ++N + +
Sbjct: 323 RSNSNS-LPRSTSNSSLNQIFEPQLRNSNINSNNNN-NNSNNNNNKQPPQPPQSNGVSGN 380
Query: 95 QSLTSAFAELRFNG-GIPIEPVSPWANCNSSPN 126
++ A++ N PI+ ++ ++N N + N
Sbjct: 381 GAIVRPIAKVGNNLLHSPID-LNQFSNFNGNMN 412
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 159/323 (49%), Positives = 230/323 (71%)
Query: 447 SVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQK 506
S+ + G +YLMAKDQ GCR LQ+ + EG D+ IF E+I++++EL TDPFGNYL+QK
Sbjct: 238 SMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQK 297
Query: 507 LLEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPG 561
L+EVCNE+QR QIL +T K G LV+IS TR VQK+IET+ + EQ SLV S+L PG
Sbjct: 298 LIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPG 357
Query: 562 IVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGE 621
++L + +NGNHV CL + P +KF+ +A T C+E+AT RHGCCV+Q+C+++S GE
Sbjct: 358 FLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGE 417
Query: 622 QRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
Q +LV +I+ N+L+L+QDPFGNY+VQ++ E ++ +++L +L GNY L+ QK+ S+
Sbjct: 418 QHEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKV--GGVNVLFELRGNYVKLATQKFGSH 475
Query: 682 VVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIR 741
VVEKCL+Y E R+ I+ EL+S + ++ DPY NYVIQ AL ++KG V ++LV+ +R
Sbjct: 476 VVEKCLRYYP-ESRSQIVNELVSVLNFGYLLQDPYANYVIQCALSKTKGFVRASLVEKVR 534
Query: 742 PHVPVLRTSPYGKKVLSCNSLKK 764
+ L+ +PY K++ S N KK
Sbjct: 535 RYEN-LKMTPYCKRIFSKNLWKK 556
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 155/324 (47%), Positives = 221/324 (68%)
Query: 447 SVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQK 506
S+ E+ G + LMAKDQ GCR LQ+ + EGT + + I + IIDH+VEL DPFGNY+VQK
Sbjct: 246 SMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQK 305
Query: 507 LLEVCNEDQRMQILQAITRKAGDLVRI-----STRAVQKVIETLKSPEQFSLVVSSLKPG 561
L +V +E+QR I+ +T +L+RI TR VQK+IET+K+ +Q +LV S LKPG
Sbjct: 306 LFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPG 365
Query: 562 IVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGE 621
+ L+K++NGNHV Q CL L P ++F+ +A T C E+A RHGCCV+Q C+++S G
Sbjct: 366 FLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGL 425
Query: 622 QRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
QR RLV++I+ N+L LSQDPFGNYVVQ++ + ++ + + +L Q +Y +L+ QK+SS+
Sbjct: 426 QRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQV--SAVKLLVQFRMHYAELATQKFSSH 483
Query: 682 VVEKCL-KYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
V+EKCL KY E RA I++EL+ + + ++ DPY NYVIQ AL +KG V + LV +
Sbjct: 484 VIEKCLRKY--PESRAEIVRELLCVPNFEYLLQDPYANYVIQTALSVTKGPVRAKLVAKV 541
Query: 741 RPHVPVLRTSPYGKKVLSCNSLKK 764
+ L +SPY KK+ S LKK
Sbjct: 542 YRYGK-LHSSPYCKKIFSKTILKK 564
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 709 (254.6 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 147/324 (45%), Positives = 224/324 (69%)
Query: 447 SVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQK 506
S+ E+ G + LMA+DQ GCR LQ+ + EGT+ D + IF+EIIDH+VEL DP GNY+VQK
Sbjct: 210 SMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQK 269
Query: 507 LLEVCNEDQRMQILQAITRKAGDLVRI-----STRAVQKVIETLKSPEQFSLVVSSLKPG 561
LL V +E+QR I+ +T K +L++I TR +QK+I+T+K+ +Q +LV S+L+PG
Sbjct: 270 LLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPG 329
Query: 562 IVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGE 621
+ L+ + NG HV Q CL +L+P +KF+ +A T C +LAT ++GC V+Q L ++ G
Sbjct: 330 FLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGL 389
Query: 622 QRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
Q RLV++I+ ++L LSQDPFGNYVVQ + + ++ +++++L + +L+ QK+SS+
Sbjct: 390 QHERLVAEISRDSLRLSQDPFGNYVVQCLIDQQV--SSVNLLLPFRTHCIELATQKFSSH 447
Query: 682 VVEKCL-KYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
V+EKCL KY E RA I++EL+S + +Q++ DPY NYVIQ AL +KG V + LV+ +
Sbjct: 448 VIEKCLRKY--PESRAEIVRELLSYPNFEQLLQDPYANYVIQTALSVTKGAVRARLVEKV 505
Query: 741 RPHVPVLRTSPYGKKVLSCNSLKK 764
+ L+++PY KK+ S LKK
Sbjct: 506 K-RFGKLQSNPYCKKIFSKTILKK 528
Score = 40 (19.1 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 103 ELRFNGGIPIEPVS 116
E + NGG+P++ VS
Sbjct: 197 EPKINGGLPLDLVS 210
Score = 37 (18.1 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 124 SPNYAVLLDCQHPNGLKEPVSNVD 147
SP L D +PNG +E ++ D
Sbjct: 121 SPGLLGLQDSFNPNGFEEMMAFKD 144
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 137/323 (42%), Positives = 207/323 (64%)
Query: 441 QPQKYNS--VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDP 498
Q ++N+ +E IY + KDQHGCR+LQRK+ E + ++ IF E H++ELMTDP
Sbjct: 225 QLSRFNNHPIEYYRNEIYGLCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDP 284
Query: 499 FGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSL 553
FGNYL QKLLE N++QR + + + A LV+I+ TRA+QK+IE + + EQ
Sbjct: 285 FGNYLCQKLLEYSNDEQRTVL---VNKAAPQLVKIALNQHGTRALQKMIEFISTEEQTQT 341
Query: 554 VVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQK 613
V+ +LK +V L++++NGNHV Q+CL L E S+F++ A CV + T RHGCCV+Q+
Sbjct: 342 VIDALKDHVVELVQDLNGNHVIQKCLNRLTAEKSQFIYDAVGAQCVTVGTHRHGCCVLQR 401
Query: 614 CLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDL 673
C+ H+ G QR RL+ +IT NA L QDPFGNYVVQ++ +L T + + L
Sbjct: 402 CIDHASGAQRARLIEQITENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKL 461
Query: 674 SMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVH 733
S K+SSNV+EKCL+ D+E R +I+E+++ L++++ D Y NYV+Q A+ +
Sbjct: 462 SKHKFSSNVIEKCLRTADEEMRRQMIEEMLAGDELEKMLRDSYANYVVQTAMDYADPATR 521
Query: 734 SALVDAIRPHVPVLRTSPYGKKV 756
+ +V I P +P LR +P+G+++
Sbjct: 522 ARIVKYIEPILPSLRGTPHGRRI 544
Score = 190 (71.9 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 49/223 (21%), Positives = 102/223 (45%)
Query: 536 RAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATT 595
R +Q+ +E ++ +Q ++ + ++ L+ + GN++ Q+ L Y E L
Sbjct: 252 RYLQRKLEE-RNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSNDEQRTVLVNKAA 310
Query: 596 NNCVELATDRHGCCVIQKCLTH-SEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELR 654
V++A ++HG +QK + S EQ ++ + + + L QD GN+V+Q
Sbjct: 311 PQLVKIALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLNRL 370
Query: 655 LPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLD 714
+ I D + + ++ V+++C+ + +RA +I+++ NA ++ D
Sbjct: 371 TAEKSQFIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQITENAFA--LVQD 428
Query: 715 PYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
P+GNYV+Q L ++ L +P L + V+
Sbjct: 429 PFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVI 471
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 620 (223.3 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 135/342 (39%), Positives = 196/342 (57%)
Query: 422 GLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIE 481
G N L SD D + S+ I KDQHGCR+LQR + + I+
Sbjct: 317 GFNVPSLISD--DPSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQRLLEKKNQSHID 374
Query: 482 KIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS-----TR 536
+F E ++ LM D FGNYL QKL E +E QR +Q I K LV IS TR
Sbjct: 375 AVFAETHPYLAVLMVDAFGNYLCQKLFEHASEAQRSTFIQIIAPK---LVPISFNMHGTR 431
Query: 537 AVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTN 596
A+QK+I+ + SP+Q S +V++L+P +V L K++NGNHV Q+CL E +F+F A
Sbjct: 432 ALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICE 491
Query: 597 NCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLP 656
+ ++++T RHGCCV+Q+C H+ Q +LV I +AL L QD FGNYV+Q+V EL P
Sbjct: 492 DPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNP 551
Query: 657 WATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPY 716
T I+ LS QK+SSNV+EKC+ + + +I EL+ HL +++ D +
Sbjct: 552 NHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSF 611
Query: 717 GNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLS 758
NYVIQ AL + + LV+ I+P +P ++ +P G+++LS
Sbjct: 612 ANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRILS 653
Score = 45 (20.9 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 41/156 (26%), Positives = 63/156 (40%)
Query: 20 IPNATSGNTHSEDTGPKRVSSNYILPPITV---NSSKGPLAEKLKNNGNLDEGKILVNKS 76
+P AT G + + P SS+ LP ++SK A L+ N LD+ IL+ +
Sbjct: 125 VPPATMGGGLNNLSSP---SSSLYLPGSASYQRSNSKNSSASILQMNTTLDDIPILLRRP 181
Query: 77 QQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANC-----NSSPNYAVLL 131
S P +S++S+ + L N G+ S N +SS N +
Sbjct: 182 GLSSYTPGPSTSR-----RSISSS-SNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTS 235
Query: 132 DCQHPNGLKEPVSNVDSQ---LMVASSFQSTNSVPS 164
NGL+ +S + L A+SF N PS
Sbjct: 236 SSSMANGLQS-ISKHSAAFPLLSNATSFFGENLTPS 270
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 553 (199.7 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 109/308 (35%), Positives = 183/308 (59%)
Query: 453 GRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCN 512
G + + KDQ+GCR+LQ+ + E + F EI +V+LM DPFGNY+ QKL +
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 513 EDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMN 570
+Q++ +L I D+ TR++Q +I+ L S EQ SL++ + P + TL + N
Sbjct: 525 REQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNN 584
Query: 571 GNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKI 630
G HV Q+C+ PE + LF + N + LAT+RHGCC++Q+CL + G+ + RLV+ I
Sbjct: 585 GTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSI 644
Query: 631 TSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYG 690
+ L+L Q+ +GNY+VQ V EL + T I+++ GN LS+QK+SSN +E+C++
Sbjct: 645 IKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTA 704
Query: 691 DDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTS 750
R ++QE +S +++Q++ D Y NYV+Q L + ++ +I +P ++ +
Sbjct: 705 SPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPKIQNT 764
Query: 751 PYGKKVLS 758
+G+ +L+
Sbjct: 765 RHGRHILA 772
Score = 151 (58.2 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 70/263 (26%), Positives = 119/263 (45%)
Query: 369 TRSQGLNTLKAVKFGTVG------GHESLNHINQSGKLLSNGHLCLSLST--PNAGCFQI 420
+R Q L+ L + G V G S+ +I KL SN + L L P+
Sbjct: 524 SREQKLSMLNGIGEGIVDICSNLYGTRSMQNIID--KLTSNEQISLLLKIIIPSLTTLAC 581
Query: 421 DGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDI 480
D + L + +P + S+EE + +A ++HGC LQR + T DI
Sbjct: 582 DNNGTHVLQKCIAKFPPEKLEPL-FLSMEE---NLITLATNRHGCCILQRCLDR-TNGDI 636
Query: 481 -EKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAG--DLVRISTRA 537
E++ II + L+ + +GNYLVQ +LE+ + +I++ L + S+ A
Sbjct: 637 QERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNA 696
Query: 538 VQKVIETLKSPEQFSLVVSSLK-PGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTN 596
+++ I T + ++ L P I L+ + N+V QR L + E KFL + +
Sbjct: 697 IEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQR-FLNVADESQKFLILRSIS 755
Query: 597 NCV-ELATDRHGCCVIQKCLTHS 618
+ + ++ RHG ++ K LT S
Sbjct: 756 HVIPKIQNTRHGRHILAK-LTSS 777
Score = 50 (22.7 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 48 TVNSSKGPLAEKLKNNGNLDEGKILVNKSQQ-SPIKRIP 85
T N SK PL+ KL + D +L NK ++ S +IP
Sbjct: 420 TSNYSKVPLSAKLTGEKSDDLSNLLKNKGKKKSQDNQIP 458
Score = 41 (19.5 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 201 ENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFADTQSSFP----YLHSQHLNQ 256
++F ++ + S + F S + E+P + +SS P + S ++
Sbjct: 101 KSFPSSVTYSPSEETFPLTSGMNKSVHEYPFTLSESAISSSHKSSIPERRNFDSSVSVSN 160
Query: 257 PPISWRNID 265
P + W N+D
Sbjct: 161 PLLHWNNVD 169
Score = 38 (18.4 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 341 NSAFSSTDCNPMHVLGKVGKQSFP 364
N++FS T P V +++FP
Sbjct: 94 NASFSKTKSFPSSVTYSPSEETFP 117
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 560 (202.2 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 131/326 (40%), Positives = 197/326 (60%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+++ G I+ + KDQHGCRFLQ+++ + + IF E D+ VELMTD FGNYL+QKL
Sbjct: 561 LDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKL 620
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGI 562
LE +QR+ +L I+ + V IS TRA+QK+IE +K+ E+ +VV SL+P
Sbjct: 621 LEEVTTEQRI-VLTKIS--SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYT 677
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQ 622
V L K++NGNHV Q+CL L PE +F+F A +++C+++AT RHGCCV+Q+CL H EQ
Sbjct: 678 VQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQ 737
Query: 623 RHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMD----ILDQLEGNYGDLSMQKY 678
L K+ + L+ DPFGNYVVQ++ D I+ L+ +LS+ K+
Sbjct: 738 CDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKF 797
Query: 679 SSNVVEKCLKYGDDERRAHIIQELISNAH---LDQVMLDPYGNYVIQAALQQS-KGG--V 732
SNV+EK LK +I E+++N + ++ D YGNYV+Q AL S K +
Sbjct: 798 GSNVIEKILKTAIVSEP--MILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYL 855
Query: 733 HSALVDAIRPH-VPVLRTSPYGKKVL 757
+ L + + P V +R +P+GK+++
Sbjct: 856 YKRLSEIVAPLLVGPIRNTPHGKRII 881
Score = 49 (22.3 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 73 VNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLD 132
+N + P+ + P A + + S + AF++++ +GG P N + PN V +D
Sbjct: 363 LNANSPIPLTQSPIHLAPVLNPSSNSVAFSDMKNDGGKPTTD-----NDKAGPN--VRMD 415
Query: 133 CQHPN 137
+PN
Sbjct: 416 LINPN 420
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 145/420 (34%), Positives = 227/420 (54%)
Query: 338 NHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQS 397
N+ N+ +S+++ + ++ K S + S GL L K T + SL +I S
Sbjct: 365 NNNNNNYSNSNISFSNI--KPNNGSLSSSANSISTGLPNLSGGKINT-NVYSSLGNIG-S 420
Query: 398 GKLLSNGHLCLSLS-TPNAGCFQIDGLNSWPLS-SDSMDLKIIRPQPQKYNSVEEVTGRI 455
G NG S +P D P++ S SM + Q K S+EE+TG+I
Sbjct: 421 GM---NGSSTKDDSVSPTKK--STDHQPRKPMTKSVSMSSIGLNNQDPKCTSLEEITGQI 475
Query: 456 YLMAKDQHGCRFLQRKISEGT-LEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNED 514
Y + K Q GCRFLQ+K+ E E + IF E+ DH+ ELM DP+G YL+ +L++ C+ +
Sbjct: 476 YHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLIPQLMKYCDNN 535
Query: 515 QRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGN 572
QR QI+ I +QK+++ L SP+Q +++S+K ++ L K+ GN
Sbjct: 536 QRRQIVDKIAPSVETFACHVYGIHGIQKLLQYL-SPDQVESIIASIKGKVIQLSKDNKGN 594
Query: 573 HVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITS 632
++ Q L PE ++F+ A N E+ T + GC V+ +C+ ++ EQ +LV KIT
Sbjct: 595 YLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKITE 654
Query: 633 NALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDD 692
++L L QD FGNYVVQ + +++ I+ L+ N +LS+QK+SSNV+EKCL+ D
Sbjct: 655 HSLKLVQDQFGNYVVQHLLSKNKAYSSKLIVS-LKDNIAELSIQKFSSNVIEKCLQLADT 713
Query: 693 ERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPY 752
II+ L + A + ++ D Y N+VIQ AL S H+ LV I P++ ++T PY
Sbjct: 714 PTYELIIKAL-TEADILSLLQDKYANFVIQTALDVSNDTQHAKLVKIIVPYIHQIKT-PY 771
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 496 (179.7 bits), Expect = 1.3e-44, P = 1.3e-44
Identities = 109/329 (33%), Positives = 182/329 (55%)
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
P +K + ++ GR+ + DQHG RF+Q+K+ + E+ +F E++ +LMTD F
Sbjct: 619 PNARKLE-LSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVF 677
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLV 554
GNY++QK +E QR ++++ + AG +V +S R +QK +E + ++ L+
Sbjct: 678 GNYVIQKFIEHGTPAQREELVKQL---AGQMVSLSLQMYGCRVIQKALEVIDVDQKTELI 734
Query: 555 VSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKC 614
L ++ +++ NGNHV Q+C+ + F+ A L+T +GC VIQ+
Sbjct: 735 -RELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRI 793
Query: 615 LTH-SEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDL 673
L H S+ E+ H ++ +I +A L+ D +GNYV Q V E P I+++L GN +
Sbjct: 794 LEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQM 853
Query: 674 SMQKYSSNVVEKCLKYGDDERRAHIIQELISNA----HLDQVMLDPYGNYVIQAALQQSK 729
S KY+SNVVEKCL++ D R +I+E++ + HL +M D + NYV+Q L+ SK
Sbjct: 854 SQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISK 913
Query: 730 GGVHSALVDAIRPHVPVLRTSPYGKKVLS 758
LV ++ H+ LR YGK +++
Sbjct: 914 DQQREILVQRMKIHLQSLRKYTYGKHIVA 942
Score = 219 (82.2 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 55/254 (21%), Positives = 124/254 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q+ V+++ G++ ++ +GCR +Q+ + ++ ++ E+ ++++ + D GN+
Sbjct: 693 QREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNH 752
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
++QK +E R+ + A R G + +ST R +Q+++E E+ ++
Sbjct: 753 VIQKCIESMPAG-RIGFVIAAFR--GQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDE 809
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
+ L + GN+V Q L P+ + + + T N V+++ ++ V++KCL H
Sbjct: 810 ILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEH 869
Query: 618 SEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
++ +R L+ +I + L + +D F NYVVQ V E+ ++ +++ +
Sbjct: 870 ADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQ 929
Query: 672 DLSMQKYSSNVVEK 685
L Y ++V +
Sbjct: 930 SLRKYTYGKHIVAR 943
Score = 156 (60.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 52/216 (24%), Positives = 90/216 (41%)
Query: 542 IETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVEL 601
++ LKSP L +S + +V + +G+ Q+ L + E +F +L
Sbjct: 613 LDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKL 672
Query: 602 ATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMD 661
TD G VIQK + H QR LV ++ + LS +G V+Q E+ +
Sbjct: 673 MTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTE 732
Query: 662 ILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVI 721
++ +L+GN + ++V++KC++ R +I + + PYG VI
Sbjct: 733 LIRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAF--RGQVATLSTHPYGCRVI 790
Query: 722 QAALQQSKGGVHS-ALVDAIRPHVPVLRTSPYGKKV 756
Q L+ + ++D I L YG V
Sbjct: 791 QRILEHCSDDEETHCIIDEILESAFALAHDQYGNYV 826
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 485 (175.8 bits), Expect = 4.9e-43, Sum P(2) = 4.9e-43
Identities = 106/324 (32%), Positives = 180/324 (55%)
Query: 444 KYNSVE--EVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
K S+E E+ G + + DQ+G RF+Q+K+ T E+ IF EI+ + LMTD FGN
Sbjct: 656 KTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGN 715
Query: 502 YLVQKLLEVCNEDQRMQILQAITRK--AGDLVRISTRAVQKVIETLKSPEQFSLVVSSLK 559
Y++QK E QR ++ + +T A L R +QK +E ++ EQ + +V L
Sbjct: 716 YVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVEL-EQQARMVKELD 774
Query: 560 PGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSE 619
++ + + NGNHV Q+C+ L ++ +F+ + + L+T +GC VIQ+ L H +
Sbjct: 775 GSVMKCVHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHID 834
Query: 620 GEQRHRLV-SKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKY 678
+ R++ +I + L+QD +GNYV+Q + + P +I+++L G +S QK+
Sbjct: 835 DIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKF 894
Query: 679 SSNVVEKCLKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHS 734
+SNVVEKCL +G E R ++ E++ N L +M DP+GNYV+Q L+ +
Sbjct: 895 ASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLA 954
Query: 735 ALVDAIRPHVPVLRTSPYGKKVLS 758
++ I+ H+ L+ YGK +++
Sbjct: 955 LILSRIKVHLNALKRYTYGKHIVA 978
Score = 246 (91.7 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 71/277 (25%), Positives = 136/277 (49%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q+ E+VTG + ++ +GCR +Q+ + LE ++ E+ +++ + D GN+
Sbjct: 729 QRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNH 788
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
++QK +E +D +Q + I+ G ++ +ST R +Q+V+E + E +++
Sbjct: 789 VIQKCIERLPQDW-IQFI--ISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEE 845
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
+ + TL ++ GN+V Q + + P + V+++ + V++KCLT
Sbjct: 846 IMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTF 905
Query: 618 SEGEQRHRLVSKITS----NALI--LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
E+R LV+++ N + + +DPFGNYVVQ V E + IL +++ +
Sbjct: 906 GGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLN 965
Query: 672 DLSMQKYSSNVV---EKCLKYGDDERRAHIIQELISN 705
L Y ++V EK + G ERR + L +N
Sbjct: 966 ALKRYTYGKHIVARVEKLITTG--ERRIGLSSSLAAN 1000
Score = 137 (53.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 56/230 (24%), Positives = 98/230 (42%)
Query: 531 VRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFL 590
V I + A ++E K+ + SL +S + ++ + G+ Q+ L E +
Sbjct: 638 VDIGSTAEASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAI 697
Query: 591 FQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFV 650
F L TD G VIQK H +QR L ++T + L LS +G V+Q
Sbjct: 698 FPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKA 757
Query: 651 FELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQ 710
E+ ++ +L+G+ + ++V++KC++ + IQ +IS+ +
Sbjct: 758 LEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDW----IQFIISSFYGKV 813
Query: 711 VMLD--PYGNYVIQAALQQSKG-GVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ L PYG VIQ L+ +++ I V L YG V+
Sbjct: 814 LALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVI 863
Score = 42 (19.8 bits), Expect = 4.9e-43, Sum P(2) = 4.9e-43
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 23 ATSGNTHSEDTGPKRVSSNYILPPITVNSSKGP--LAEKLKNNGNLD 67
A++ +H + PKR SS+ L + +S G L++ NGN++
Sbjct: 425 ASTVGSHGQVNIPKRTSSSASLYSTSDHSRLGSVGLSDVNIRNGNIN 471
Score = 41 (19.5 bits), Expect = 6.3e-43, Sum P(2) = 6.3e-43
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 333 VPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLN 392
+P+ + S +S++D + LG VG + R+ +N F T GG+ + N
Sbjct: 436 IPKRTSSSASLYSTSDHSR---LGSVGLSD----VNIRNGNIN---GTDFSTAGGYMAKN 485
Query: 393 HIN 395
+N
Sbjct: 486 KLN 488
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 480 (174.0 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 106/318 (33%), Positives = 171/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 721 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 780
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + DQ++ + I L R +QK +E++ SP+Q + +V L ++
Sbjct: 781 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESI-SPDQQNEMVKELDGHVLKC 839
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 840 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 899
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVEK
Sbjct: 900 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 959
Query: 686 CLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ H L +M D Y NYV+Q + ++ ++ I
Sbjct: 960 CVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1019
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1020 RPHITTLRKYTYGKHILA 1037
Score = 215 (80.7 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 61/259 (23%), Positives = 123/259 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK + G + +A +GCR +Q+ + + + ++ E+ H+++ + D GN+
Sbjct: 788 QKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNH 847
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
+VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 848 VVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEE 903
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
L L+++ GN+V Q L + PE + + L+ + V++KC+TH
Sbjct: 904 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH 963
Query: 618 SEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++ +
Sbjct: 964 ASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHI 1023
Query: 671 GDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1024 TTLRKYTYGKHILAKLEKY 1042
Score = 166 (63.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 51/222 (22%), Positives = 106/222 (47%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
L+ I P Q V+E+ G + KDQ+G +Q+ I + ++ I + L
Sbjct: 817 LESISPDQQN-EMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 875
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFS 552
T P+G ++Q++LE C +Q + IL+ + + LV+ +Q V+E + PE S
Sbjct: 876 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKS 934
Query: 553 LVVSSLKPGIVTLIKNMNGNHVAQRCLLYLL-PEYSKFLFQATTNN------CVELATDR 605
+VS ++ ++ L ++ ++V ++C+ + E + + + N + D+
Sbjct: 935 KIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQ 994
Query: 606 HGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+ V+QK + +E QR ++ KI + L + +G +++
Sbjct: 995 YANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHIL 1036
Score = 137 (53.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 48/218 (22%), Positives = 92/218 (42%)
Query: 540 KVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV 599
+++E ++ +L + L IV ++ +G+ Q+ L P + +F
Sbjct: 706 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 765
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
+L TD G VIQK +Q+ L ++I + L L+ +G V+Q E P
Sbjct: 766 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQ 825
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNY 719
+++ +L+G+ + ++VV+KC++ + II + + PYG
Sbjct: 826 NEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFV--LSTHPYGCR 883
Query: 720 VIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
VIQ L+ +++ + H L YG V+
Sbjct: 884 VIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 921
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 480 (174.0 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 106/318 (33%), Positives = 171/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 722 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 781
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + DQ++ + I L R +QK +E++ SP+Q + +V L ++
Sbjct: 782 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESI-SPDQQNEMVKELDGHVLKC 840
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 841 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 900
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVEK
Sbjct: 901 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 960
Query: 686 CLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ H L +M D Y NYV+Q + ++ ++ I
Sbjct: 961 CVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1020
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1021 RPHITTLRKYTYGKHILA 1038
Score = 215 (80.7 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 61/259 (23%), Positives = 123/259 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK + G + +A +GCR +Q+ + + + ++ E+ H+++ + D GN+
Sbjct: 789 QKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNH 848
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
+VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 849 VVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEE 904
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
L L+++ GN+V Q L + PE + + L+ + V++KC+TH
Sbjct: 905 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH 964
Query: 618 SEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++ +
Sbjct: 965 ASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHI 1024
Query: 671 GDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1025 TTLRKYTYGKHILAKLEKY 1043
Score = 166 (63.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 51/222 (22%), Positives = 106/222 (47%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
L+ I P Q V+E+ G + KDQ+G +Q+ I + ++ I + L
Sbjct: 818 LESISPDQQN-EMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 876
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFS 552
T P+G ++Q++LE C +Q + IL+ + + LV+ +Q V+E + PE S
Sbjct: 877 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKS 935
Query: 553 LVVSSLKPGIVTLIKNMNGNHVAQRCLLYLL-PEYSKFLFQATTNN------CVELATDR 605
+VS ++ ++ L ++ ++V ++C+ + E + + + N + D+
Sbjct: 936 KIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQ 995
Query: 606 HGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+ V+QK + +E QR ++ KI + L + +G +++
Sbjct: 996 YANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHIL 1037
Score = 137 (53.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 48/218 (22%), Positives = 92/218 (42%)
Query: 540 KVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV 599
+++E ++ +L + L IV ++ +G+ Q+ L P + +F
Sbjct: 707 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 766
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
+L TD G VIQK +Q+ L ++I + L L+ +G V+Q E P
Sbjct: 767 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQ 826
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNY 719
+++ +L+G+ + ++VV+KC++ + II + + PYG
Sbjct: 827 NEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFV--LSTHPYGCR 884
Query: 720 VIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
VIQ L+ +++ + H L YG V+
Sbjct: 885 VIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 922
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 478 (173.3 bits), Expect = 2.0e-42, P = 2.0e-42
Identities = 106/318 (33%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 723 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 782
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + DQ++ + I L R +QK +E++ S +Q S +V L ++
Sbjct: 783 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQ-SEMVKELDGHVLKC 841
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 842 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 901
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVEK
Sbjct: 902 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 961
Query: 686 CLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ H L +M D Y NYV+Q + ++ ++ I
Sbjct: 962 CVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1021
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1022 RPHITTLRKYTYGKHILA 1039
Score = 216 (81.1 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 61/259 (23%), Positives = 123/259 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK + G + +A +GCR +Q+ + + + ++ E+ H+++ + D GN+
Sbjct: 790 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 849
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
+VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 850 VVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEE 905
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
L L+++ GN+V Q L + PE + + L+ + V++KC+TH
Sbjct: 906 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH 965
Query: 618 SEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++ +
Sbjct: 966 ASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHI 1025
Query: 671 GDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1026 TTLRKYTYGKHILAKLEKY 1044
Score = 130 (50.8 bits), Expect = 0.00019, P = 0.00019
Identities = 47/218 (21%), Positives = 91/218 (41%)
Query: 540 KVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV 599
+++E ++ +L + L IV ++ +G+ Q+ L P + +F
Sbjct: 708 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 767
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
+L TD G VIQK +Q+ L ++I + L L+ +G V+Q E
Sbjct: 768 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQ 827
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNY 719
+++ +L+G+ + ++VV+KC++ + II + + PYG
Sbjct: 828 SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFV--LSTHPYGCR 885
Query: 720 VIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
VIQ L+ +++ + H L YG V+
Sbjct: 886 VIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 923
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 478 (173.3 bits), Expect = 2.0e-42, P = 2.0e-42
Identities = 106/318 (33%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + DQ++ + I L R +QK +E++ S +Q S +V L ++
Sbjct: 784 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQ-SEMVKELDGHVLKC 842
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 843 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 902
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVEK
Sbjct: 903 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 962
Query: 686 CLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ H L +M D Y NYV+Q + ++ ++ I
Sbjct: 963 CVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1022
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1023 RPHITTLRKYTYGKHILA 1040
Score = 216 (81.1 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 61/259 (23%), Positives = 123/259 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK + G + +A +GCR +Q+ + + + ++ E+ H+++ + D GN+
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 850
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
+VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 851 VVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEE 906
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
L L+++ GN+V Q L + PE + + L+ + V++KC+TH
Sbjct: 907 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH 966
Query: 618 SEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++ +
Sbjct: 967 ASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHI 1026
Query: 671 GDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1027 TTLRKYTYGKHILAKLEKY 1045
Score = 130 (50.8 bits), Expect = 0.00019, P = 0.00019
Identities = 47/218 (21%), Positives = 91/218 (41%)
Query: 540 KVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV 599
+++E ++ +L + L IV ++ +G+ Q+ L P + +F
Sbjct: 709 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 768
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
+L TD G VIQK +Q+ L ++I + L L+ +G V+Q E
Sbjct: 769 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQ 828
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNY 719
+++ +L+G+ + ++VV+KC++ + II + + PYG
Sbjct: 829 SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFV--LSTHPYGCR 886
Query: 720 VIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
VIQ L+ +++ + H L YG V+
Sbjct: 887 VIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 924
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 480 (174.0 bits), Expect = 3.5e-42, Sum P(2) = 3.5e-42
Identities = 106/319 (33%), Positives = 170/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 562 LRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQLMTDVFGNYVIQKF 621
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + DQ++ + I L R +QK +E++ S +Q S +V L ++
Sbjct: 622 FEFGSLDQKLALANRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLK 681
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 682 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTL 741
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVE
Sbjct: 742 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 801
Query: 685 KCLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ H L +M D Y NYV+Q + ++ ++
Sbjct: 802 KCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHK 861
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 862 IRPHITTLRKYTYGKHILA 880
Score = 213 (80.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 62/261 (23%), Positives = 124/261 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLED--IEKIFVEIIDHIVELMTDPFG 500
QK + G + +A +GCR +Q+ + + + I ++ E+ H+++ + D G
Sbjct: 629 QKLALANRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 688
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 689 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPIL 744
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + + L+ + V++KC+
Sbjct: 745 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCV 804
Query: 616 THSEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++
Sbjct: 805 THASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 864
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 865 HITTLRKYTYGKHILAKLEKY 885
Score = 37 (18.1 bits), Expect = 3.5e-42, Sum P(2) = 3.5e-42
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 387 GHESLNHINQSGKLLSNG 404
G SL + +QS L S+G
Sbjct: 363 GSSSLTNSSQSSSLFSHG 380
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 449 (163.1 bits), Expect = 7.9e-42, P = 7.9e-42
Identities = 106/345 (30%), Positives = 180/345 (52%)
Query: 427 PLSSDSMDLKI-IRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEK--I 483
P ++D + + P K + ++ G + AKDQ G RF+Q++++ + EK I
Sbjct: 170 PTTTDDLLTRYRANPAMMKNLKLSDIRGALLKFAKDQVGSRFIQQELASSK-DRFEKDSI 228
Query: 484 FVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKV 541
F E++ + EL+ D FGNY+VQK E E +++ AI + + + R +QK
Sbjct: 229 FDEVVSNADELVDDIFGNYVVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKA 288
Query: 542 IETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQA---TTNNC 598
+E + P Q ++S ++ I +K+ NGNHV Q+ + + P+Y +F+ ++N
Sbjct: 289 LEKINEPLQIK-ILSQIRHVIHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTI 347
Query: 599 VELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWA 658
E++ D +GC V+Q+CL H Q ++ +I ++ + +GNYVVQ V E
Sbjct: 348 YEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEED 407
Query: 659 TMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAH-----LDQVML 713
M I+ ++ N + + KYSSNV+EKCL+ G ++ I+ + + Q+M
Sbjct: 408 RMVIVTRVSNNLFEFATHKYSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSVPIVVQMMK 467
Query: 714 DPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLS 758
D Y NYV+Q Q L+ +RPH+PVLR P+GK +L+
Sbjct: 468 DQYANYVVQKMFDQVTSEQRRELILTVRPHIPVLRQFPHGKHILA 512
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 41/187 (21%), Positives = 88/187 (47%)
Query: 438 IRPQPQKY--NSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELM 495
+ PQ ++ +++ E + IY M+ D +GCR +QR + + + + +I E+
Sbjct: 328 VSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEIA 387
Query: 496 TDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSL 553
+ +GNY+VQ ++E +E+ RM I+ ++ + + S+ ++K +E + S+
Sbjct: 388 NNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHKYSSNVIEKCLEQ-GAVYHKSM 446
Query: 554 VVSSL-------KPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRH 606
+V + P +V ++K+ N+V Q+ + E + L + L H
Sbjct: 447 IVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQRRELILTVRPHIPVLRQFPH 506
Query: 607 GCCVIQK 613
G ++ K
Sbjct: 507 GKHILAK 513
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 468 (169.8 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 105/319 (32%), Positives = 171/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 558 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 617
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 618 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 677
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 678 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 737
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 738 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 797
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++
Sbjct: 798 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 857
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 858 IRPHIATLRKYTYGKHILA 876
Score = 228 (85.3 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 65/261 (24%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 625 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 684
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 685 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPIL 740
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 741 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 800
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 801 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 860
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 861 HIATLRKYTYGKHILAKLEKY 881
Score = 183 (69.5 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 553 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 612
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 613 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 670
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 671 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 724
Score = 46 (21.3 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 312 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 363
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 364 NSNSQSSSLFSQG 376
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 478 (173.3 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 106/318 (33%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 668 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 727
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + DQ++ + I L R +QK +E++ S +Q S +V L ++
Sbjct: 728 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQ-SEMVKELDGHVLKC 786
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 787 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 846
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVEK
Sbjct: 847 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 906
Query: 686 CLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ H L +M D Y NYV+Q + ++ ++ I
Sbjct: 907 CVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 966
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 967 RPHITTLRKYTYGKHILA 984
Score = 216 (81.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 61/259 (23%), Positives = 123/259 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK + G + +A +GCR +Q+ + + + ++ E+ H+++ + D GN+
Sbjct: 735 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 794
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
+VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 795 VVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEE 850
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
L L+++ GN+V Q L + PE + + L+ + V++KC+TH
Sbjct: 851 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH 910
Query: 618 SEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++ +
Sbjct: 911 ASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHI 970
Query: 671 GDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 971 TTLRKYTYGKHILAKLEKY 989
Score = 37 (18.1 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 387 GHESLNHINQSGKLLSNG 404
G SL + +QS L S+G
Sbjct: 469 GSSSLTNSSQSSSLFSHG 486
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 469 (170.2 bits), Expect = 1.5e-41, P = 1.5e-41
Identities = 117/299 (39%), Positives = 172/299 (57%)
Query: 450 EVTGRIYLMAKDQHGCRFLQRKISEGT-------LEDIEKIFVEIIDHIVELMTDPFGNY 502
++ I +AKDQ+GCRFLQ+KI E L + E IF +I H+ EL+ DPFGNY
Sbjct: 281 QLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFGNY 340
Query: 503 LVQKLLEVCNE---DQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLK 559
L+QKL+ CNE D M+ILQ + + + TRA+QK+I++L + Q L++ LK
Sbjct: 341 LIQKLIVYCNESNLDLLMEILQYNLFQIS-INQHGTRALQKIIDSLNNSHQLGLLIKGLK 399
Query: 560 PGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSE 619
P I+ LIK++NGNHV Q+ L P +F++ + ++ +AT +HGCCV+QKCL H
Sbjct: 400 PYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCLNHVT 459
Query: 620 GEQR---HRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG--DLS 674
+Q R + K N +L D FGNYV+Q++ + I N+G +L
Sbjct: 460 LQQLGEFSRAILKF-ENFKLLINDQFGNYVLQYLISINSLDINFQIFQNFV-NFGISNLC 517
Query: 675 MQKYSSNVVEKCLK--YGDDERR---AHIIQELISN---AHLDQVMLDPYGNYVIQAAL 725
K+SSNVVEK LK Y ++ +++ ELI + L+ ++ DPYGNYVIQ +
Sbjct: 518 NLKFSSNVVEKFLKNCYANESVNVSFSNLKFELIYIILVSDLNVLINDPYGNYVIQTMI 576
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 468 (169.8 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 105/318 (33%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + +Q++ + + I L R +QK +E + S +Q +V L ++
Sbjct: 664 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 722
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 723 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 782
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVEK
Sbjct: 783 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 842
Query: 686 CLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++ I
Sbjct: 843 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 902
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 903 RPHIATLRKYTYGKHILA 920
Score = 230 (86.0 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 67/260 (25%), Positives = 126/260 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIID-HIVELMTDPFGN 501
QK E + G + +A +GCR +Q+ + E D + V +D H+++ + D GN
Sbjct: 671 QKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKDQNGN 729
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 730 HVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILE 785
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L L+++ GN+V Q L + PE + N + L+ + V++KC+T
Sbjct: 786 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 845
Query: 617 HSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGN 669
H+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 846 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPH 905
Query: 670 YGDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 906 IATLRKYTYGKHILAKLEKY 925
Score = 190 (71.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 45/172 (26%), Positives = 88/172 (51%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 599 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 658
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +++EL +
Sbjct: 659 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL--D 716
Query: 706 AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 717 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 768
Score = 169 (64.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 50/217 (23%), Positives = 104/217 (47%)
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
P Q+ V E+ G + KDQ+G +Q+ I + ++ I + L T P+
Sbjct: 704 PSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPY 763
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSS 557
G ++Q++LE C DQ + IL+ + + LV+ +Q V+E + PE S +V+
Sbjct: 764 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAE 822
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLL-PEYSKFLFQATTNN------CVELATDRHGCCV 610
++ ++ L ++ ++V ++C+ + E + + + T N + D++ V
Sbjct: 823 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYV 882
Query: 611 IQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+QK + +E QR ++ KI + L + +G +++
Sbjct: 883 VQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 919
Score = 46 (21.3 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 358 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 409
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 410 NSNSQSSSLFSQG 422
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 478 (173.3 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 106/319 (33%), Positives = 170/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + DQ++ + I L R +QK +E++ S +Q S +V L ++
Sbjct: 784 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLK 843
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 844 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTL 903
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVE
Sbjct: 904 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963
Query: 685 KCLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ H L +M D Y NYV+Q + ++ ++
Sbjct: 964 KCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHK 1023
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1024 IRPHITTLRKYTYGKHILA 1042
Score = 212 (79.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 62/261 (23%), Positives = 124/261 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLED--IEKIFVEIIDHIVELMTDPFG 500
QK + G + +A +GCR +Q+ + + + I ++ E+ H+++ + D G
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 851 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPIL 906
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + + L+ + V++KC+
Sbjct: 907 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCV 966
Query: 616 THSEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++
Sbjct: 967 THASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 1026
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1027 HITTLRKYTYGKHILAKLEKY 1047
Score = 37 (18.1 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 387 GHESLNHINQSGKLLSNG 404
G SL + +QS L S+G
Sbjct: 525 GSSSLTNSSQSSSLFSHG 542
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 478 (173.3 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 106/318 (33%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 729 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 788
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + DQ++ + I L R +QK +E++ S +Q S +V L ++
Sbjct: 789 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQ-SEMVKELDGHVLKC 847
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 848 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 907
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVEK
Sbjct: 908 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 967
Query: 686 CLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ H L +M D Y NYV+Q + ++ ++ I
Sbjct: 968 CVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1027
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1028 RPHISTLRKYTYGKHILA 1045
Score = 218 (81.8 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 61/259 (23%), Positives = 123/259 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK + G + +A +GCR +Q+ + + + ++ E+ H+++ + D GN+
Sbjct: 796 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 855
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
+VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 856 VVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEE 911
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
L L+++ GN+V Q L + PE + + L+ + V++KC+TH
Sbjct: 912 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH 971
Query: 618 SEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++ +
Sbjct: 972 ASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHI 1031
Query: 671 GDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1032 STLRKYTYGKHILAKLEKY 1050
Score = 37 (18.1 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 358 VGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNG 404
+G Q P++ + N L++ F G SL + +QS L S+G
Sbjct: 505 IGTQPPPQQQQQQQPSTN-LQSNSFY---GSTSLTNSSQSSSLFSHG 547
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 476 (172.6 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 106/319 (33%), Positives = 170/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + DQ++ + I L R +QK +E++ S +Q S +V L ++
Sbjct: 784 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLK 843
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 844 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTL 903
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SNVVE
Sbjct: 904 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963
Query: 685 KCLKYGDDERRAHIIQELI---SNAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ H L +M D Y NYV+Q + ++ ++
Sbjct: 964 KCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHK 1023
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1024 IRPHITTLRKYTYGKHILA 1042
Score = 212 (79.7 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 62/261 (23%), Positives = 124/261 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLED--IEKIFVEIIDHIVELMTDPFG 500
QK + G + +A +GCR +Q+ + + + I ++ E+ H+++ + D G
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E + EQ ++
Sbjct: 851 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPIL 906
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + + L+ + V++KC+
Sbjct: 907 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCV 966
Query: 616 THSEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ +AL + +D + NYVVQ + ++ P I+ ++
Sbjct: 967 THASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 1026
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1027 HITTLRKYTYGKHILAKLEKY 1047
Score = 39 (18.8 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 358 VGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQSGKLLSNG 404
+G Q P++ + Q L++ F G SL + +QS L S+G
Sbjct: 500 IGTQP-PQQQQQQQQPSTNLQSNSFY---GSSSLTNSSQSSSLFSHG 542
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 464 (168.4 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 100/316 (31%), Positives = 169/316 (53%)
Query: 450 EVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLE 509
E+ G + + DQ+G RF+Q+K+ T ++ ++ EI+ H + LMTD FGNY++QK E
Sbjct: 634 EIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFE 693
Query: 510 VCNEDQRMQILQAITRKAG--DLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIK 567
QR ++ + L R +QK IE + ++ +V L ++ ++
Sbjct: 694 HGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHVMRCVR 752
Query: 568 NMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHS-EGEQRHRL 626
+ NGNHV Q+C+ + E +F+ N V L+T +GC VIQ+ L H + + + ++
Sbjct: 753 DQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKV 812
Query: 627 VSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKC 686
+ +I S +L+QD +GNYV+Q V E P I+ +L G +S QK++SNVVEKC
Sbjct: 813 MDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKC 872
Query: 687 LKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRP 742
L +G E R ++ E++ N L +M D + NYV+Q L+ ++ I+
Sbjct: 873 LTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKV 932
Query: 743 HVPVLRTSPYGKKVLS 758
H+ L+ YGK +++
Sbjct: 933 HLNALKKYTYGKHIVA 948
Score = 229 (85.7 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 67/266 (25%), Positives = 127/266 (47%)
Query: 442 PQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
PQ+ +++ + ++ +GCR +Q+ I L+ K+ E+ H++ + D GN
Sbjct: 698 PQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGN 757
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C ++ ++ + I+ G++V +ST R +Q+V+E P+ S V+
Sbjct: 758 HVVQKCIE-CVPEENIEFI--ISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMD 814
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+ I L ++ GN+V Q L + P+ + + V+++ + V++KCLT
Sbjct: 815 EIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLT 874
Query: 617 HSEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
E+R LV+++ + +D F NYVVQ V E IL +++ +
Sbjct: 875 FGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHL 934
Query: 671 GDLSMQKYSSNVVEKCLKY-GDDERR 695
L Y ++V + K ERR
Sbjct: 935 NALKKYTYGKHIVARVEKLVAAGERR 960
Score = 196 (74.1 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 64/282 (22%), Positives = 131/282 (46%)
Query: 449 EEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLL 508
EE+ + D G +Q+ G ++ ++ D+++ L +G ++QK +
Sbjct: 669 EEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAI 728
Query: 509 EVCNEDQRMQILQAITRKAGDLVRIST--RAVQKVIETLKSPEQFSLVVSSLKPGIVTLI 566
EV + DQ++++++ + VR VQK IE + E ++S+ +VTL
Sbjct: 729 EVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPE-ENIEFIISTFFGNVVTLS 787
Query: 567 KNMNGNHVAQRCLLYLL-PEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+ G V QR L + P+ + + LA D++G VIQ L H + ++R
Sbjct: 788 THPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTV 847
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGD----LSMQK--YS 679
++ ++ + +SQ F + VV+ P +++++ G + +M K ++
Sbjct: 848 IIKELAGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFA 907
Query: 680 SNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVI 721
+ VV+K L+ DD++R I+ + HL+ + YG +++
Sbjct: 908 NYVVQKVLETCDDQQRELILGRI--KVHLNALKKYTYGKHIV 947
Score = 46 (21.3 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 134 QHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFD-----EFDLTKVRQESSNMVNLDVQE 188
Q G + V + V S QS S+P GFD EF++ K SS +
Sbjct: 132 QRLKGSSNVLGGVGDRRKVNDS-QSLFSMPPGFDQRKQHEFEVEKTSASSSEWDANGLIG 190
Query: 189 LKKLQVGYRQ 198
L L +G +Q
Sbjct: 191 LPGLGIGGKQ 200
Score = 44 (20.5 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 372 QGLNTLKAVKFGTVGGHESLNHINQSG 398
Q + ++ FG GGH N +NQ G
Sbjct: 338 QDVEKVRNYMFGLQGGH---NEVNQHG 361
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 468 (169.8 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 105/319 (32%), Positives = 171/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 702 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 761
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 762 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 821
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 822 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 881
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 882 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 941
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++
Sbjct: 942 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1001
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1002 IRPHIATLRKYTYGKHILA 1020
Score = 228 (85.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 65/261 (24%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 769 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 828
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 829 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPIL 884
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 885 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 944
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 945 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 1004
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1005 HIATLRKYTYGKHILAKLEKY 1025
Score = 183 (69.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 697 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 756
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 757 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 814
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 815 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 868
Score = 46 (21.3 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 456 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 507
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 508 NSNSQSSSLFSQG 520
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 469 (170.2 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 122/393 (31%), Positives = 198/393 (50%)
Query: 382 FGTVGG--HESLNHINQS-GKLLS--NGHLCLSLSTPNAGCFQID----GLNSWPLSSDS 432
FGT GG + S +I+ + G + SL +P++ F G++ S S
Sbjct: 710 FGTAGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRS 769
Query: 433 MDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIV 492
L+ R + E+ G I ++DQHG RF+Q K+ T + + +F EI+
Sbjct: 770 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 829
Query: 493 ELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ 550
+LM D FGNY++QK E + +Q++ + + I L R +QK +E + S +Q
Sbjct: 830 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 889
Query: 551 FSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCV 610
+V L ++ +K+ NGNHV Q+C+ + P+ +F+ A L+T +GC V
Sbjct: 890 NEMV-RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 948
Query: 611 IQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
IQ+ L H +Q ++ ++ + L QD +GNYV+Q V E P I+ ++ GN
Sbjct: 949 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1008
Query: 671 GDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAAL 725
LS K++SNVVEKC+ + RA +I E+ + H L +M D Y NYV+Q +
Sbjct: 1009 LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMI 1068
Query: 726 QQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLS 758
++ G ++ IRPH+ LR YGK +L+
Sbjct: 1069 DVAEPGQRKIVMHKIRPHIATLRKYTYGKHILA 1101
Score = 230 (86.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 67/260 (25%), Positives = 126/260 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIID-HIVELMTDPFGN 501
QK E + G + +A +GCR +Q+ + E D + V +D H+++ + D GN
Sbjct: 852 QKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKDQNGN 910
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 911 HVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILE 966
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L L+++ GN+V Q L + PE + N + L+ + V++KC+T
Sbjct: 967 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1026
Query: 617 HSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGN 669
H+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 1027 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPH 1086
Query: 670 YGDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1087 IATLRKYTYGKHILAKLEKY 1106
Score = 46 (21.3 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 618 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 669
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 670 NSNSQSSSLFSQG 682
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 473 (171.6 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 105/318 (33%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + +Q++ + + I L R +QK +E + S +Q +V L ++
Sbjct: 664 FEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 722
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 723 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 782
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVEK
Sbjct: 783 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 842
Query: 686 CLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++ I
Sbjct: 843 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 902
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 903 RPHIATLRKYTYGKHILA 920
Score = 230 (86.0 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 67/260 (25%), Positives = 126/260 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIID-HIVELMTDPFGN 501
QK E + G + +A +GCR +Q+ + E D + V +D H+++ + D GN
Sbjct: 671 QKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKDQNGN 729
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 730 HVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILE 785
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L L+++ GN+V Q L + PE + N + L+ + V++KC+T
Sbjct: 786 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 845
Query: 617 HSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGN 669
H+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 846 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPH 905
Query: 670 YGDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 906 IATLRKYTYGKHILAKLEKY 925
Score = 193 (73.0 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 45/172 (26%), Positives = 88/172 (51%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 599 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNY 658
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +++EL +
Sbjct: 659 VIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL--D 716
Query: 706 AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 717 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 768
Score = 169 (64.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 50/217 (23%), Positives = 104/217 (47%)
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
P Q+ V E+ G + KDQ+G +Q+ I + ++ I + L T P+
Sbjct: 704 PSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPY 763
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSS 557
G ++Q++LE C DQ + IL+ + + LV+ +Q V+E + PE S +V+
Sbjct: 764 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAE 822
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLL-PEYSKFLFQATTNN------CVELATDRHGCCV 610
++ ++ L ++ ++V ++C+ + E + + + T N + D++ V
Sbjct: 823 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYV 882
Query: 611 IQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+QK + +E QR ++ KI + L + +G +++
Sbjct: 883 VQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 919
Score = 37 (18.1 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 18/85 (21%), Positives = 29/85 (34%)
Query: 136 PNGLKEPVSNVDSQL---MVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKL 192
P G ++P Q + +SSF NS+ S L +L L
Sbjct: 380 PLGTQQPQPQPQQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSL 439
Query: 193 QVGYRQPVENFSGALPNAHSLQGFR 217
+ F A+ N+++ G R
Sbjct: 440 GATLGSALGGFGTAVANSNTGSGSR 464
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 468 (169.8 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 105/318 (33%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 787 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 846
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + +Q++ + + I L R +QK +E + S +Q +V L ++
Sbjct: 847 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 905
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 906 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 965
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVEK
Sbjct: 966 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1025
Query: 686 CLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++ I
Sbjct: 1026 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1085
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1086 RPHIATLRKYTYGKHILA 1103
Score = 230 (86.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 67/260 (25%), Positives = 126/260 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIID-HIVELMTDPFGN 501
QK E + G + +A +GCR +Q+ + E D + V +D H+++ + D GN
Sbjct: 854 QKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKDQNGN 912
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 913 HVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILE 968
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L L+++ GN+V Q L + PE + N + L+ + V++KC+T
Sbjct: 969 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1028
Query: 617 HSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGN 669
H+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 1029 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPH 1088
Query: 670 YGDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1089 IATLRKYTYGKHILAKLEKY 1108
Score = 190 (71.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 45/172 (26%), Positives = 88/172 (51%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 782 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 841
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +++EL +
Sbjct: 842 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL--D 899
Query: 706 AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 900 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 951
Score = 169 (64.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 50/217 (23%), Positives = 104/217 (47%)
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
P Q+ V E+ G + KDQ+G +Q+ I + ++ I + L T P+
Sbjct: 887 PSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPY 946
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSS 557
G ++Q++LE C DQ + IL+ + + LV+ +Q V+E + PE S +V+
Sbjct: 947 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAE 1005
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLL-PEYSKFLFQATTNN------CVELATDRHGCCV 610
++ ++ L ++ ++V ++C+ + E + + + T N + D++ V
Sbjct: 1006 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYV 1065
Query: 611 IQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+QK + +E QR ++ KI + L + +G +++
Sbjct: 1066 VQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1102
Score = 46 (21.3 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 541 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 592
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 593 NSNSQSSSLFSQG 605
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 468 (169.8 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 105/318 (33%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + +Q++ + + I L R +QK +E + S +Q +V L ++
Sbjct: 906 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 964
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 965 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 1024
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVEK
Sbjct: 1025 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1084
Query: 686 CLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++ I
Sbjct: 1085 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1144
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1145 RPHIATLRKYTYGKHILA 1162
Score = 230 (86.0 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 67/260 (25%), Positives = 126/260 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIID-HIVELMTDPFGN 501
QK E + G + +A +GCR +Q+ + E D + V +D H+++ + D GN
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKDQNGN 971
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 972 HVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILE 1027
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L L+++ GN+V Q L + PE + N + L+ + V++KC+T
Sbjct: 1028 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087
Query: 617 HSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGN 669
H+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 1088 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPH 1147
Query: 670 YGDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1148 IATLRKYTYGKHILAKLEKY 1167
Score = 190 (71.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 45/172 (26%), Positives = 88/172 (51%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 841 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 900
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +++EL +
Sbjct: 901 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL--D 958
Query: 706 AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 959 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1010
Score = 169 (64.5 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 50/217 (23%), Positives = 104/217 (47%)
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
P Q+ V E+ G + KDQ+G +Q+ I + ++ I + L T P+
Sbjct: 946 PSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPY 1005
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSS 557
G ++Q++LE C DQ + IL+ + + LV+ +Q V+E + PE S +V+
Sbjct: 1006 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAE 1064
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLL-PEYSKFLFQATTNN------CVELATDRHGCCV 610
++ ++ L ++ ++V ++C+ + E + + + T N + D++ V
Sbjct: 1065 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYV 1124
Query: 611 IQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+QK + +E QR ++ KI + L + +G +++
Sbjct: 1125 VQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1161
Score = 46 (21.3 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 600 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 651
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 652 NSNSQSSSLFSQG 664
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 468 (169.8 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 105/319 (32%), Positives = 171/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 906 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 965
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 966 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 1025
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1026 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1085
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++
Sbjct: 1086 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1145
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1146 IRPHIATLRKYTYGKHILA 1164
Score = 228 (85.3 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 65/261 (24%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 972
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 973 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPIL 1028
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 1029 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1088
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 1089 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 1148
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1149 HIATLRKYTYGKHILAKLEKY 1169
Score = 183 (69.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 841 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 900
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 901 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 958
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 959 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1012
Score = 46 (21.3 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 600 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 651
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 652 NSNSQSSSLFSQG 664
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 468 (169.8 bits), Expect = 4.7e-41, Sum P(2) = 4.7e-41
Identities = 105/319 (32%), Positives = 171/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 907 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 966
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 967 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 1026
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++
Sbjct: 1087 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1146
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1147 IRPHIATLRKYTYGKHILA 1165
Score = 228 (85.3 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 65/261 (24%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 974 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPIL 1029
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 1030 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1089
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 1090 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 1149
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1150 HIATLRKYTYGKHILAKLEKY 1170
Score = 183 (69.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 842 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 901
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 902 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 959
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 960 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1013
Score = 46 (21.3 bits), Expect = 4.7e-41, Sum P(2) = 4.7e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 601 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 652
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 653 NSNSQSSSLFSQG 665
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 468 (169.8 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 105/319 (32%), Positives = 171/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 941
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 942 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 1001
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 1002 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 1061
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1062 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1121
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++
Sbjct: 1122 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1181
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1182 IRPHIATLRKYTYGKHILA 1200
Score = 228 (85.3 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 65/261 (24%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 949 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 1008
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 1009 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPIL 1064
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 1065 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1124
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 1125 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 1184
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1185 HIATLRKYTYGKHILAKLEKY 1205
Score = 183 (69.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 877 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 936
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 937 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 994
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 995 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1048
Score = 46 (21.3 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 21/73 (28%), Positives = 27/73 (36%)
Query: 332 AVPRGINHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESL 391
A N + T P LG Q P++ Q N L + F G+ SL
Sbjct: 636 AAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQ-----QPNNNLASSSFY---GNNSL 687
Query: 392 NHINQSGKLLSNG 404
N +QS L S G
Sbjct: 688 NSNSQSSSLFSQG 700
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 462 (167.7 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
Identities = 104/318 (32%), Positives = 169/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 395 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 454
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + +Q++ + + I L R +QK +E + S +Q +V L ++
Sbjct: 455 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 513
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 514 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 573
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVEK
Sbjct: 574 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 633
Query: 686 CLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ + H L +M D Y NYV+Q + ++ ++ I
Sbjct: 634 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKI 693
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 694 RPHIATLRKYTYGKHILA 711
Score = 229 (85.7 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 67/260 (25%), Positives = 126/260 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIID-HIVELMTDPFGN 501
QK E + G + +A +GCR +Q+ + E D + V +D H+++ + D GN
Sbjct: 462 QKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKDQNGN 520
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 521 HVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILE 576
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L L+++ GN+V Q L + PE + N + L+ + V++KC+T
Sbjct: 577 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 636
Query: 617 HSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGN 669
H+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 637 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPH 696
Query: 670 YGDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 697 IATLRKYTYGKHILAKLEKY 716
Score = 190 (71.9 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 45/172 (26%), Positives = 88/172 (51%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 390 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 449
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +++EL +
Sbjct: 450 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL--D 507
Query: 706 AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 508 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 559
Score = 170 (64.9 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 50/217 (23%), Positives = 104/217 (47%)
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
P Q+ V E+ G + KDQ+G +Q+ I + ++ I + L T P+
Sbjct: 495 PSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPY 554
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSS 557
G ++Q++LE C DQ + IL+ + + LV+ +Q V+E + PE S +V+
Sbjct: 555 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAE 613
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLL-PEYSKFLFQATTNN------CVELATDRHGCCV 610
++ ++ L ++ ++V ++C+ + E + + + T N + D++ V
Sbjct: 614 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYV 673
Query: 611 IQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+QK + +E QR ++ KI + L + +G +++
Sbjct: 674 VQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHIL 710
Score = 37 (18.1 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
Identities = 18/85 (21%), Positives = 29/85 (34%)
Query: 136 PNGLKEPVSNVDSQL---MVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKL 192
P G ++P Q + +SSF NS+ S L +L L
Sbjct: 171 PLGTQQPQPQPQQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSL 230
Query: 193 QVGYRQPVENFSGALPNAHSLQGFR 217
+ F A+ N+++ G R
Sbjct: 231 GATLGSALGGFGTAVANSNTGSGSR 255
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 473 (171.6 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 105/319 (32%), Positives = 171/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 907 FEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 966
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 967 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 1026
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ G ++
Sbjct: 1087 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1146
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1147 IRPHIATLRKYTYGKHILA 1165
Score = 228 (85.3 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 65/261 (24%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 974 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPIL 1029
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 1030 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1089
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 1090 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 1149
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1150 HIATLRKYTYGKHILAKLEKY 1170
Score = 186 (70.5 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 842 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNY 901
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 902 VIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 959
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 960 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1013
Score = 37 (18.1 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 18/85 (21%), Positives = 29/85 (34%)
Query: 136 PNGLKEPVSNVDSQL---MVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKL 192
P G ++P Q + +SSF NS+ S L +L L
Sbjct: 623 PLGTQQPQPQPQQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSL 682
Query: 193 QVGYRQPVENFSGALPNAHSLQGFR 217
+ F A+ N+++ G R
Sbjct: 683 GATLGSALGGFGTAVANSNTGSGSR 707
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 461 (167.3 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 104/319 (32%), Positives = 169/319 (52%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + +Q + +V L ++
Sbjct: 907 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLK 966
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 967 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTL 1026
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ ++
Sbjct: 1087 KCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHK 1146
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1147 IRPHIATLRKYTYGKHILA 1165
Score = 230 (86.0 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 66/261 (25%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E PEQ ++
Sbjct: 974 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PEQTLPIL 1029
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 1030 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1089
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 1090 THASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRP 1149
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1150 HIATLRKYTYGKHILAKLEKY 1170
Score = 182 (69.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 842 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 901
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 902 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQ--VINEMVRE 959
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 960 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1013
Score = 48 (22.0 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 29/124 (23%), Positives = 49/124 (39%)
Query: 61 KNNGNLDEGKILVNKSQQSPIKR---IPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSP 117
KN G D K+ K + + + +P + D + + + N ++ + P
Sbjct: 256 KNKGTFDGDKLGDLKEEGDVMDKTNGLPVQNGIDTDVKDFSRTPGNCQ-NSASEVDLLGP 314
Query: 118 WANCNSSPNYAVLLDCQHPNGLK--EPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVR 175
N N S A L NG K E SN++SQ + + P FD + T+V
Sbjct: 315 --NQNGSEGLAQLAST---NGAKPVEDFSNIESQSVPLDPMEHVGMEPLQFD-YSGTQVP 368
Query: 176 QESS 179
+S+
Sbjct: 369 VDSA 372
Score = 37 (18.1 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
Identities = 18/82 (21%), Positives = 29/82 (35%)
Query: 136 PNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKLQVG 195
P ++P +N+ S SSF NS+ S L +L L
Sbjct: 631 PQPQQQPTNNLAS-----SSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGAT 685
Query: 196 YRQPVENFSGALPNAHSLQGFR 217
+ F A+ N+++ G R
Sbjct: 686 LGSALGGFGTAVANSNTGSGSR 707
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 456 (165.6 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 104/320 (32%), Positives = 176/320 (55%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I +KDQ G R +Q+KI +LE+ + +F E++ + LMTD FGNY++QK
Sbjct: 457 LSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNYVLQKF 516
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E +Q+ + ++ L R +QK IE+++ +Q L++ L IV
Sbjct: 517 FEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDKQI-LLIGELNGHIVQC 575
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+ + NGNHV Q+C+ + +F+ + + +LAT +GC VIQ+ L H +Q
Sbjct: 576 VTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAP 635
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ A+ L QD +GNYV+Q V E P I+ +L+G +LS K++SNV+EK
Sbjct: 636 ILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEK 695
Query: 686 CLKYGDDERRAHIIQELISNAH-------LDQVMLDPYGNYVIQAALQQSKGGVHSALVD 738
C+++G R II E++ +A+ L +++ DPY NYVIQ L + +++
Sbjct: 696 CVQHGCTAERILIINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIVEPAQRDMIIN 755
Query: 739 AIRPHVPVLRTSPYGKKVLS 758
I+P VP L+ GK ++S
Sbjct: 756 RIQPFVPTLKKVTPGKHIIS 775
Score = 195 (73.7 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 63/263 (23%), Positives = 127/263 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK ++++G I + +GCR +Q+ I L+ + E+ HIV+ +TD GN+
Sbjct: 524 QKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDKQILLIGELNGHIVQCVTDQNGNH 583
Query: 503 LVQKLLEVCNEDQRMQILQAITRKA-GDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++QK C E ++Q I G + +++T R +Q+++E + +Q + ++
Sbjct: 584 VIQK----CIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHC-AEKQVAPILD 638
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L V+L+++ GN+V Q L P + L+ + VI+KC+
Sbjct: 639 ELMRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQ 698
Query: 617 HSEGEQRHRLVSKI--------TSNALI-LSQDPFGNYVVQFVFELRLPWATMD-ILDQL 666
H +R ++++I +SN L+ + +DP+ NYV+Q + ++ P A D I++++
Sbjct: 699 HGCTAERILIINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIVEP-AQRDMIINRI 757
Query: 667 EGNYGDLSMQKYSSNVVEKCLKY 689
+ L +++ + KY
Sbjct: 758 QPFVPTLKKVTPGKHIISRIEKY 780
Score = 150 (57.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 51/211 (24%), Positives = 94/211 (44%)
Query: 550 QFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCC 609
+ L +S +K I K+ G+ + Q+ + E + +F L TD G
Sbjct: 452 KMKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNY 511
Query: 610 VIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFE-LRLPWATMDILDQLEG 668
V+QK H EQ+ L K++ + L L+ +G V+Q E + L + ++ +L G
Sbjct: 512 VLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDKQIL-LIGELNG 570
Query: 669 NYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN--AHLDQVMLDPYGNYVIQAALQ 726
+ + ++V++KC+ ++ H+IQ +I + H+ Q+ PYG VIQ L+
Sbjct: 571 HIVQCVTDQNGNHVIQKCI----EKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILE 626
Query: 727 QSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ ++D + L YG V+
Sbjct: 627 HCAEKQVAPILDELMRCAVSLVQDQYGNYVI 657
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 462 (167.7 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 104/319 (32%), Positives = 170/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 820 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 879
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 880 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 939
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 940 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 999
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1000 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1059
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ ++
Sbjct: 1060 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHK 1119
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1120 IRPHIATLRKYTYGKHILA 1138
Score = 227 (85.0 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 65/261 (24%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 887 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 946
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 947 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPIL 1002
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 1003 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1062
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 1063 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRP 1122
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1123 HIATLRKYTYGKHILAKLEKY 1143
Score = 183 (69.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 815 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 874
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 875 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 932
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 933 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 986
Score = 44 (20.5 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 27/112 (24%), Positives = 39/112 (34%)
Query: 107 NG-GIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSG 165
NG G P+ V+P SS A Q P +P + L +SSF NS+ S
Sbjct: 574 NGLGAPVRLVAPAPVIISSS--AAQAGTQQPQ--PQPQQQPSNSL-ASSSFYGNNSLSSN 628
Query: 166 FDEFDLTKVRQESSNMVNLDVQELKKLQVGYRQPVENFSGALPNAHSLQGFR 217
L +L L + F A+ N+++ G R
Sbjct: 629 SQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 680
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 431 (156.8 bits), Expect = 7.5e-40, P = 7.5e-40
Identities = 121/394 (30%), Positives = 203/394 (51%)
Query: 378 KAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGL---NSWPLSSDSMD 434
++ ++ T+GG + +N S NG C S + + I G NSW S++
Sbjct: 143 QSYRYDTIGGGNGM--LNNS---FLNGVPCASRNNVSDYYTNIFGYGVNNSWR-SNEGCT 196
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
Q Q +S+E G + +A D+ + L++ I GT E I+ IF +I I EL
Sbjct: 197 YN----QDQAASSMENGRGSYFSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICEL 252
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRI-----STRAVQKVIETL--KS 547
M DPFGN +V+ L+ C+ +Q + I+ +TR V I T A+Q ++ ++ ++
Sbjct: 253 MVDPFGNDVVKLLIGKCSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERA 312
Query: 548 PEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHG 607
Q ++ ++ + L +N N +V C + L + + +C ++A D++G
Sbjct: 313 NNQIPRIMDAISSVALQLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNG 372
Query: 608 CCVIQKCLTHSE---GEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILD 664
CC++Q+C E R RL+S++ +AL L + GNYVVQ+V EL T +++
Sbjct: 373 CCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVN 432
Query: 665 QLEGNYGDLSMQKYSSNVVEKCLKY-GDDERRAHIIQELISNAHLDQVMLDPYGNYVIQA 723
+L NY L+ KY S+VV+K LK G D + I+ +L+ +D ++LDP+GNYVIQ
Sbjct: 433 KLLRNYAHLARNKYGSHVVQKLLKLRGIDSKL--IVVDLLRG--IDTLLLDPFGNYVIQT 488
Query: 724 ALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
A SK V L I ++ ++R + +G K+L
Sbjct: 489 AWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKIL 522
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 456 (165.6 bits), Expect = 1.2e-39, P = 1.2e-39
Identities = 111/341 (32%), Positives = 175/341 (51%)
Query: 422 GLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIE 481
G+ P S L+ R Q + ++ I ++DQHG RF+Q+K+ T + +
Sbjct: 1083 GVGGAPQPGRSRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQ 1142
Query: 482 KIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQR----MQILQAITRKAGDLVRISTRA 537
+F EI+ LMTD FGNY++QK E +Q+ MQ+ + + A L R
Sbjct: 1143 MVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLA--LQMYGCRV 1200
Query: 538 VQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNN 597
+QK +E++ SPEQ +V L ++ +K+ NGNHV Q+C+ + P +F+ A
Sbjct: 1201 IQKALESI-SPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQ 1259
Query: 598 CVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPW 657
L+T +GC VIQ+ L H EQ ++ ++ + L QD +GNYV+Q V E
Sbjct: 1260 VYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQE 1319
Query: 658 ATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS-NAHLDQVML-DP 715
+++ + G LS K++SNVVEKC+ + R +I E+ + N + VM+ D
Sbjct: 1320 DKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQ 1379
Query: 716 YGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKV 756
Y NYV+Q + S+ L+ IRPH+ LR YGK +
Sbjct: 1380 YANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHI 1420
Score = 258 (95.9 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 66/223 (29%), Positives = 113/223 (50%)
Query: 535 TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQAT 594
+R +Q+ +E + E+ +V S + +L+ ++ GN+V Q+ + PE L
Sbjct: 1126 SRFIQQKLERATAAEK-QMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQV 1184
Query: 595 TNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELR 654
+ ++LA +GC VIQK L EQ+ +V ++ + L +D GN+VVQ E
Sbjct: 1185 KGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECV 1244
Query: 655 LPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLD 714
P A I++ +G LS Y V+++ L++ E+ I+ EL + H +Q++ D
Sbjct: 1245 DPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDEL--HEHTEQLIQD 1302
Query: 715 PYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
YGNYVIQ L+ K S L++++R V VL + V+
Sbjct: 1303 QYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVV 1345
Score = 239 (89.2 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 64/258 (24%), Positives = 130/258 (50%)
Query: 442 PQKYNSVE-EVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFG 500
P++ N++ +V G + +A +GCR +Q+ + + E ++I E+ H+++ + D G
Sbjct: 1174 PEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNG 1233
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + +Q + I G + +ST R +Q+++E + EQ + ++
Sbjct: 1234 NHVVQKCIE-CVDPVALQFI--INAFKGQVYSLSTHPYGCRVIQRILEHCTA-EQTTPIL 1289
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L LI++ GN+V Q L + E L + + L+ + V++KC+
Sbjct: 1290 DELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCV 1349
Query: 616 THSEGEQRHRLVSKITS---NAL-ILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
TH+ +R L+ ++ + NAL ++ +D + NYVVQ + ++ P ++ ++ +
Sbjct: 1350 THATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMA 1409
Query: 672 DLSMQKYSSNVVEKCLKY 689
L Y ++ K KY
Sbjct: 1410 ALRKYTYGKHINAKLEKY 1427
Score = 151 (58.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 53/236 (22%), Positives = 96/236 (40%)
Query: 522 AITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLY 581
A+ AG + +++E ++ +L + L IV ++ +G+ Q+ L
Sbjct: 1076 AVAAAAGGVGGAPQPGRSRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLER 1135
Query: 582 LLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDP 641
+ +F L TD G VIQK EQ++ L ++ + L L+
Sbjct: 1136 ATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQM 1195
Query: 642 FGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQE 701
+G V+Q E P +I+ +L+G+ + ++VV+KC++ D II
Sbjct: 1196 YGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINA 1255
Query: 702 LISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ + PYG VIQ L+ + ++D + H L YG V+
Sbjct: 1256 FKGQVY--SLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVI 1309
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 452 (164.2 bits), Expect = 1.3e-39, P = 1.3e-39
Identities = 99/318 (31%), Positives = 169/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G + + DQ+G RF+Q+K+ T ++ ++ EI+ + LMTD FGNY++QK
Sbjct: 624 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKF 683
Query: 508 LEVCNEDQRMQILQAITRKAG--DLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E QR ++ + + L R +QK IE + ++ +V L ++
Sbjct: 684 FEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMV-KELDGHVMRC 742
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG-EQRH 624
+++ NGNHV Q+C+ + E +F+ + V L+T +GC VIQ+ L H + +
Sbjct: 743 VRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQS 802
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
+++ +I S +L+QD +GNYVVQ V E P I+ +L G +S QK++SNVVE
Sbjct: 803 KVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 862
Query: 685 KCLKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
KCL +G E R ++ E++ N L +M D + NYV+Q L+ ++ I
Sbjct: 863 KCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRI 922
Query: 741 RPHVPVLRTSPYGKKVLS 758
+ H+ L+ YGK +++
Sbjct: 923 KVHLNALKKYTYGKHIVA 940
Score = 225 (84.3 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 66/266 (24%), Positives = 127/266 (47%)
Query: 442 PQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
PQ+ E++ + ++ +GCR +Q+ I L+ ++ E+ H++ + D GN
Sbjct: 690 PQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGN 749
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C ++ ++ + I+ G +V +ST R +Q+V+E +P+ S V+
Sbjct: 750 HVVQKCIE-CVPEENIEFI--ISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVME 806
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+ + L ++ GN+V Q L + P+ + + V+++ + V++KCLT
Sbjct: 807 EILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLT 866
Query: 617 HSEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
E+R LV+++ + +D F NYVVQ V E IL +++ +
Sbjct: 867 FGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHL 926
Query: 671 GDLSMQKYSSNVVEKCLKY-GDDERR 695
L Y ++V + K ERR
Sbjct: 927 NALKKYTYGKHIVARVEKLVAAGERR 952
Score = 200 (75.5 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 48/169 (28%), Positives = 89/169 (52%)
Query: 589 FLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQ 648
F + VE ++D++G IQ+ L + ++++ + +I AL L D FGNYV+Q
Sbjct: 622 FELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQ 681
Query: 649 FVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHL 708
FE LP ++ ++L N LS+Q Y V++K ++ D +++ +++EL + H+
Sbjct: 682 KFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKEL--DGHV 739
Query: 709 DQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ + D GN+V+Q ++ ++ HV L T PYG +V+
Sbjct: 740 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVI 788
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 462 (167.7 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 104/319 (32%), Positives = 170/319 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 941
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 942 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 1001
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 1002 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 1061
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1062 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1121
Query: 685 KCLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + H L +M D Y NYV+Q + ++ ++
Sbjct: 1122 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHK 1181
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1182 IRPHIATLRKYTYGKHILA 1200
Score = 227 (85.0 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 65/261 (24%), Positives = 126/261 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 949 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 1008
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 1009 NHVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPIL 1064
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L L+++ GN+V Q L + PE + N + L+ + V++KC+
Sbjct: 1065 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1124
Query: 616 THSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEG 668
TH+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 1125 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRP 1184
Query: 669 NYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1185 HIATLRKYTYGKHILAKLEKY 1205
Score = 183 (69.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 45/174 (25%), Positives = 88/174 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 877 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 936
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 937 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 994
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 995 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1048
Score = 38 (18.4 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 18/85 (21%), Positives = 29/85 (34%)
Query: 136 PNGLKEPVSNVDSQ---LMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKL 192
P G ++P Q + +SSF NS+ S L +L L
Sbjct: 658 PLGTQQPQPQPQQQPSNSLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSL 717
Query: 193 QVGYRQPVENFSGALPNAHSLQGFR 217
+ F A+ N+++ G R
Sbjct: 718 GATLGSALGGFGTAVANSNTGSGSR 742
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 462 (167.7 bits), Expect = 2.1e-39, Sum P(2) = 2.1e-39
Identities = 104/318 (32%), Positives = 169/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + +Q++ + + I L R +QK +E + S +Q +V L ++
Sbjct: 906 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 964
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 965 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 1024
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVEK
Sbjct: 1025 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1084
Query: 686 CLKYGDDERRAHIIQELIS---NAH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ + H L +M D Y NYV+Q + ++ ++ I
Sbjct: 1085 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKI 1144
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1145 RPHIATLRKYTYGKHILA 1162
Score = 229 (85.7 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 67/260 (25%), Positives = 126/260 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIID-HIVELMTDPFGN 501
QK E + G + +A +GCR +Q+ + E D + V +D H+++ + D GN
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKDQNGN 971
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 972 HVVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILE 1027
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L L+++ GN+V Q L + PE + N + L+ + V++KC+T
Sbjct: 1028 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087
Query: 617 HSEGEQRHRLVSKI-TSN-----ALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGN 669
H+ +R L+ ++ T N AL + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 1088 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPH 1147
Query: 670 YGDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1148 IATLRKYTYGKHILAKLEKY 1167
Score = 190 (71.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 45/172 (26%), Positives = 88/172 (51%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 841 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 900
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +++EL +
Sbjct: 901 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL--D 958
Query: 706 AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 959 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1010
Score = 170 (64.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 50/217 (23%), Positives = 104/217 (47%)
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
P Q+ V E+ G + KDQ+G +Q+ I + ++ I + L T P+
Sbjct: 946 PSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPY 1005
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSS 557
G ++Q++LE C DQ + IL+ + + LV+ +Q V+E + PE S +V+
Sbjct: 1006 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAE 1064
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLL-PEYSKFLFQATTNN------CVELATDRHGCCV 610
++ ++ L ++ ++V ++C+ + E + + + T N + D++ V
Sbjct: 1065 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYV 1124
Query: 611 IQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+QK + +E QR ++ KI + L + +G +++
Sbjct: 1125 VQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHIL 1161
Score = 37 (18.1 bits), Expect = 2.1e-39, Sum P(2) = 2.1e-39
Identities = 18/85 (21%), Positives = 29/85 (34%)
Query: 136 PNGLKEPVSNVDSQL---MVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELKKL 192
P G ++P Q + +SSF NS+ S L +L L
Sbjct: 622 PLGTQQPQPQPQQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSL 681
Query: 193 QVGYRQPVENFSGALPNAHSLQGFR 217
+ F A+ N+++ G R
Sbjct: 682 GATLGSALGGFGTAVANSNTGSGSR 706
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 445 (161.7 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 103/330 (31%), Positives = 172/330 (52%)
Query: 440 PQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPF 499
P Q +++++ + AKDQHG RF+Q+K+ +L D IF ++++ ELMTD F
Sbjct: 332 PNGQTPKTLQDIKNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVF 391
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSS 557
GNY++QK E N +QR Q++ I L R +QK +E ++ Q ++
Sbjct: 392 GNYVIQKFFEFGNNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHE-ILGE 450
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATT----NNCVELATDRHGCCVIQK 613
++ ++ +K+ NGNHV Q+ + + PE +F+ A T +N L+ +GC VIQ+
Sbjct: 451 MEGQVLKCVKDQNGNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQR 510
Query: 614 CLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDIL-DQLEGNYGD 672
L + EQ+ ++ + + L D +GNYV+Q V E P I+ D + +
Sbjct: 511 VLEYCNEEQKQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLK 570
Query: 673 LSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAH-----LDQVMLDPYGNYVIQAALQQ 727
+ K++SNV+EKCL +G R II ++ + + L Q+M DP+ NYV+Q L
Sbjct: 571 FAQHKFASNVIEKCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDV 630
Query: 728 SKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ + I+PH+ LR +GK +L
Sbjct: 631 ADPQHRKKITLTIKPHIATLRKYNFGKHIL 660
Score = 205 (77.2 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 64/262 (24%), Positives = 128/262 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q+ V + G + +A +GCR +Q+ + + +I E+ +++ + D GN+
Sbjct: 407 QRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQNGNH 466
Query: 503 LVQKLLEVCNEDQRMQ-ILQAITRKAGDLV-RIST-----RAVQKVIETLKSPEQFSLVV 555
++QK++E E +R+Q I+ A T+ D V +S R +Q+V+E EQ V+
Sbjct: 467 VIQKVIERV-EPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNE-EQKQPVL 524
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQ-ATTNNCVELATDRHGCCVIQKC 614
+L+ + L+ + GN+V Q + + P + + Q +++ ++ A + VI+KC
Sbjct: 525 DALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIEKC 584
Query: 615 LTHSEGEQRHRLVSKITSNA-------LILSQDPFGNYVVQFVFELRLPWATMDILDQLE 667
LT +R+ ++ K+ + L + +DPF NYVVQ + ++ P I ++
Sbjct: 585 LTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKKITLTIK 644
Query: 668 GNYGDLSMQKYSSNVVEKCLKY 689
+ L + +++ K KY
Sbjct: 645 PHIATLRKYNFGKHILLKLEKY 666
Score = 41 (19.5 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 21/102 (20%), Positives = 40/102 (39%)
Query: 86 QEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSN 145
Q++ + P +S + FNG + SP ++ NY P + P
Sbjct: 33 QDQGHSPKSESFGQSVTTA-FNGMVDNLVGSPSSSVQQR-NY--FTTTPFPIS-RSPNDR 87
Query: 146 VDSQLMVASSFQ-----STNSVPSGFDEFDLTKVRQESSNMV 182
D ++M S+ + VP G +F +T Q+ +++
Sbjct: 88 NDDKIMGNGSYGVPIPIPQDGVPQGTPDFQMTPFLQQGGHLI 129
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 455 (165.2 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 100/318 (31%), Positives = 170/318 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G + + DQ+G RF+Q+K+ T ++ ++ EI+ + LMTD FGNY++QK
Sbjct: 628 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKF 687
Query: 508 LEVCNEDQRMQILQAITRKAG--DLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E QR ++ + + L R +QK IE + ++ +V L ++
Sbjct: 688 FEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHVMRC 746
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHS-EGEQRH 624
+++ NGNHV Q+C+ + E +F+ + V L+T +GC VIQ+ L H + + +
Sbjct: 747 VRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQS 806
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
+++ +I S +L+QD +GNYVVQ V E P I+ +L G +S QK++SNVVE
Sbjct: 807 KVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 866
Query: 685 KCLKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
KCL +G E R ++ E++ N L +M D + NYV+Q L+ ++ I
Sbjct: 867 KCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRI 926
Query: 741 RPHVPVLRTSPYGKKVLS 758
+ H+ L+ YGK V++
Sbjct: 927 KVHLTALKKYTYGKHVVA 944
Score = 229 (85.7 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 68/266 (25%), Positives = 126/266 (47%)
Query: 442 PQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
PQ+ E++ + ++ +GCR +Q+ I L+ K+ E+ H++ + D GN
Sbjct: 694 PQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGN 753
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C ++ ++ + I+ G +V +ST R +Q+V+E P+ S V+
Sbjct: 754 HVVQKCIE-CVPEENIEFI--ISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVME 810
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+ + L ++ GN+V Q L + P+ + + V+++ + V++KCLT
Sbjct: 811 EILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLT 870
Query: 617 HSEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
E+R LV+++ + +D F NYVVQ V E IL +++ +
Sbjct: 871 FGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHL 930
Query: 671 GDLSMQKYSSNVVEKCLKY-GDDERR 695
L Y +VV + K ERR
Sbjct: 931 TALKKYTYGKHVVARIEKLVAAGERR 956
Score = 201 (75.8 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 47/169 (27%), Positives = 90/169 (53%)
Query: 589 FLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQ 648
F + VE ++D++G IQ+ L + ++++ + +I AL+L D FGNYV+Q
Sbjct: 626 FELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQ 685
Query: 649 FVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHL 708
FE LP ++ ++L + LS+Q Y V++K ++ D +++ +++EL + H+
Sbjct: 686 KFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKEL--DGHV 743
Query: 709 DQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ + D GN+V+Q ++ ++ HV L T PYG +V+
Sbjct: 744 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVI 792
Score = 40 (19.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 370 RSQGLNTLKAVK---FGTVGGHESLN 392
RSQ ++ V+ FG GGH +N
Sbjct: 328 RSQAEQDVEKVRNYMFGLQGGHNEVN 353
Score = 38 (18.4 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 543 ETLKSPEQFSLVVSSLKPGIVTLIKNMNGNH 573
+ L SP + L +L P + +++ N GN+
Sbjct: 395 QQLDSPN-YCLNNYALNPAVASMMANQLGNN 424
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 446 (162.1 bits), Expect = 4.3e-39, P = 4.3e-39
Identities = 115/372 (30%), Positives = 189/372 (50%)
Query: 398 GKLLSNGHLCLSLSTPN-AGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIY 456
G LS GH+ + P ++G N L + +LK + ++++ + ++TG I
Sbjct: 482 GPPLSPGHVPYVEAYPGWQPQGSLEGANGPRLCNFLEELK--SGKGRRFD-LSDITGHIV 538
Query: 457 LMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQR 516
+ DQHG RF+Q+K+ E+ +F EI+ H +LMTD FGNY++QK E N QR
Sbjct: 539 EFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQR 598
Query: 517 MQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNG 571
++ + G +V +S R +QK ++ ++ P+Q + L ++ +++ NG
Sbjct: 599 KELADQLM---GQIVPLSLQMYGCRVIQKALDVIE-PDQRVRLARELDGQVMRCVRDQNG 654
Query: 572 NHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSK-I 630
NHV Q+C+ + + F+ A L+ +GC VIQ+ L + + R +++ I
Sbjct: 655 NHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEI 714
Query: 631 TSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYG 690
+ +LS+D +GNYV Q V E I +L G+ LS+ K++SNV+EKCL+YG
Sbjct: 715 LESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYG 774
Query: 691 DDERRAHIIQELI----SNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPV 746
R II+E+ S L +M D YGNYV+Q + L +R H
Sbjct: 775 GRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASA 834
Query: 747 LRTSPYGKKVLS 758
L+ YGK ++S
Sbjct: 835 LKKYTYGKHIVS 846
Score = 192 (72.6 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 53/251 (21%), Positives = 115/251 (45%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q+ +++ G+I ++ +GCR +Q+ + + ++ E+ ++ + D GN+
Sbjct: 597 QRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNH 656
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKP 560
++QK +E D+ +L A + L R +Q+++E Q + +
Sbjct: 657 VIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILE 716
Query: 561 GIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG 620
+ L K+ GN+V Q L E + + + + + V+L+ + VI+KCL +
Sbjct: 717 SVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGR 776
Query: 621 EQRHRLVSKITS-----NALILS-QDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLS 674
+R ++ +I N+L++ +D +GNYVVQ +FE + + ++ + L
Sbjct: 777 VERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALK 836
Query: 675 MQKYSSNVVEK 685
Y ++V +
Sbjct: 837 KYTYGKHIVSR 847
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 456 (165.6 bits), Expect = 4.4e-39, Sum P(2) = 4.4e-39
Identities = 107/320 (33%), Positives = 170/320 (53%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G + ++DQHG RF+Q K+ + + + +F EI+ +LM D FGNY++QK
Sbjct: 811 LREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 870
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + DQ++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 871 FEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 930
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV-ELATDRHGCCVIQKCLTHSEGEQR 623
+K+ NGNHV Q+C+ + P +F+ A V L+T +GC VIQ+ L H EQ
Sbjct: 931 CVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCLPEQT 990
Query: 624 HRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVV 683
++ +I + L QD +GNYV+Q V E I+ ++ GN LS K++SNVV
Sbjct: 991 LSILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVV 1050
Query: 684 EKCLKYGDDERRAHIIQELISNA---H--LDQVMLDPYGNYVIQAALQQSKGGVHSALVD 738
EKC+ + RA +I E+ S A H L +M D Y NYV+Q + ++ ++
Sbjct: 1051 EKCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMH 1110
Query: 739 AIRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1111 KIRPHIATLRKYTYGKHILA 1130
Score = 219 (82.2 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 64/262 (24%), Positives = 125/262 (47%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKIS--EGTLEDIEKIFVEIIDHIVELMTDPFG 500
QK E + G + +A +GCR +Q+ + + I ++ E+ H+++ + D G
Sbjct: 878 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 937
Query: 501 NYLVQKLLEVCNEDQRMQ-ILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLV 554
N++VQK +E C + +Q I+ A K + +ST R +Q+++E PEQ +
Sbjct: 938 NHVVQKCIE-CVQPHALQFIIDAF--KGQQVFALSTHPYGCRVIQRILEHCL-PEQTLSI 993
Query: 555 VSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKC 614
+ + L+++ GN+V Q L + E + N + L+ + V++KC
Sbjct: 994 LEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEKC 1053
Query: 615 LTHSEGEQRHRLVSKITS------NALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLE 667
+THS +R L+ ++ S +AL + +D + NYVVQ + ++ P ++ ++
Sbjct: 1054 VTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIR 1113
Query: 668 GNYGDLSMQKYSSNVVEKCLKY 689
+ L Y +++ K KY
Sbjct: 1114 PHIATLRKYTYGKHILAKLEKY 1135
Score = 177 (67.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 45/175 (25%), Positives = 88/175 (50%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 806 YPNLQLREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNY 865
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 866 VIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 923
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIR-PHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 924 LDGHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVI 978
Score = 40 (19.1 bits), Expect = 4.4e-39, Sum P(2) = 4.4e-39
Identities = 22/93 (23%), Positives = 36/93 (38%)
Query: 79 SPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVL-LDCQHPN 137
SP R+P + LP + SA G P P +P S + A++ Q +
Sbjct: 19 SPHLRLPPPDRPLPSMPVVLSAAGHTPQPGPSPQAP-APTQGAGRSQDDAMVDYFFQRQH 77
Query: 138 GLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFD 170
G + +N + + + N V S DE +
Sbjct: 78 GDQPGYNNCKHRWPTGDNIHADNQVRS-MDELN 109
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 443 (161.0 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 111/342 (32%), Positives = 173/342 (50%)
Query: 424 NSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKI 483
N S L + Q++ + ++ G + L + DQHG RF+Q+K++ T E+ E +
Sbjct: 370 NGQEFLQQSRVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAV 429
Query: 484 FVEIID-HIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQK 540
F EI ++LM D FGNY+VQK E NE Q+ +L I L R VQK
Sbjct: 430 FQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQK 489
Query: 541 VIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVE 600
IE + SPE ++ L ++ + + NGNHV Q+ + + + +F+ +A
Sbjct: 490 AIEYI-SPEHQVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHV 548
Query: 601 LATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATM 660
L+ +GC VIQ+ + H E R ++ ++ + L L+QD +GNYVVQ +
Sbjct: 549 LSAHPYGCRVIQRAIEHCHSE-RKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKK 607
Query: 661 DILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS----NAHLDQVML-DP 715
I D + + LS K++SNVVE+C+ Y D R I+ ++IS N + +M+ D
Sbjct: 608 YIFDLMIDHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDK 667
Query: 716 YGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
Y NYVIQ L S L+ I PH+ VL+ YGK ++
Sbjct: 668 YANYVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLI 709
Score = 260 (96.6 bits), Expect = 9.2e-19, P = 9.2e-19
Identities = 73/218 (33%), Positives = 113/218 (51%)
Query: 556 SSLKPGIVTLIKNMNGNHVAQRC-LLYLLPEYSKFLFQATT--NNCVELATDRHGCCVIQ 612
S+ P +LI N NG Q+ +LYL + F+ + N V +TD+HG IQ
Sbjct: 357 SAATPANPSLI-NQNGQEFLQQSRVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQ 415
Query: 613 KCLTHSEGEQRHRLVSKITSNALI-LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
+ L + E+R + +I S + + L D FGNYVVQ FE +L Q++G+
Sbjct: 416 QKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVF 475
Query: 672 DLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGG 731
LS+Q Y VV+K ++Y E + +IQEL + H+ + D GN+VIQ A++ G
Sbjct: 476 SLSLQMYGCRVVQKAIEYISPEHQVQLIQEL--DGHVLDCVCDQNGNHVIQKAIECIDTG 533
Query: 732 VHSALVDAIRPHVPVLRTSPYGKKVLS-----CNSLKK 764
++ A+RP + VL PYG +V+ C+S +K
Sbjct: 534 HLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERK 571
Score = 129 (50.5 bits), Expect = 0.00015, P = 0.00015
Identities = 51/233 (21%), Positives = 106/233 (45%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
++ I P+ Q ++E+ G + DQ+G +Q+ I ++ I + I L
Sbjct: 491 IEYISPEHQ-VQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVL 549
Query: 495 MTDPFGNYLVQKLLEVCNEDQRM---QILQAITRKAGDLVRISTRAVQKVIETLKSPEQ- 550
P+G ++Q+ +E C+ ++++ ++L I + D + VQ ++ T ++
Sbjct: 550 SAHPYGCRVIQRAIEHCHSERKLIIEELLPHILKLTQD--QYGNYVVQHILRTGSESDKK 607
Query: 551 --FSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLP-EYSKFL---FQATTNNC---VEL 601
F L++ L + L + ++V +RC+ Y+ + + L NC + +
Sbjct: 608 YIFDLMIDHL----LFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLM 663
Query: 602 ATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELR 654
D++ VIQK L S E+R L+S I + +L + +G +++ V R
Sbjct: 664 MKDKYANYVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVERFR 716
Score = 127 (49.8 bits), Expect = 0.00025, P = 0.00025
Identities = 49/192 (25%), Positives = 90/192 (46%)
Query: 392 NHINQSG-KLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEE 450
NH+ Q + + GHL L QI L++ P + I ++ +EE
Sbjct: 520 NHVIQKAIECIDTGHLQFILRALRP---QIHVLSAHPYGCRVIQRAIEHCHSERKLIIEE 576
Query: 451 VTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEV 510
+ I + +DQ+G +Q + G+ D + IF +IDH++ L F + +V++ +
Sbjct: 577 LLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISY 636
Query: 511 CNEDQRMQIL-QAITRKAGD----LVRISTRAVQKVIETL--KSPEQF-SLVVSSLKPGI 562
++ R +IL + I+ KA + ++ + + VI+ L SPE+ L++S + P I
Sbjct: 637 ISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHI 696
Query: 563 VTLIKNMNGNHV 574
L K G H+
Sbjct: 697 SVLKKFTYGKHL 708
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 418 (152.2 bits), Expect = 2.0e-38, P = 2.0e-38
Identities = 136/459 (29%), Positives = 220/459 (47%)
Query: 322 SNQEQFWDAYAVPRGINHLNSAFSST---DCNPMHVLGKVGKQSFPE-KILTRSQGLNTL 377
S+ Q D+ +PR N + + SS D N ++L +G E + L R LN L
Sbjct: 75 SSVGQNGDSIHLPRRTNQVFTGSSSGGAGDDNG-YLLPPMGSHHHRELEELQRHNYLNQL 133
Query: 378 KAVKFGTVGGHESL--NHINQSGKLLSNGHL----CLS---LSTPNAGCFQIDGLNSWPL 428
+ + + H+S N +L+NG L S +S F +G N W
Sbjct: 134 R-MSYQNDYAHQSYWYNTDGDGNGMLNNGFLNDVPSSSRDRVSDYYTNRFGYEGYNYWR- 191
Query: 429 SSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEII 488
++ D YN + AKD+ L I +GT E ++ I+ +I
Sbjct: 192 GNEGFD----------YNQCQ---ASFSAFAKDKEMSERLGMSIFQGTKETVDAIYNGLI 238
Query: 489 DHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRI-----STRAVQKVIE 543
I ELM DP+G+ +VQ L+ C+ +Q +Q++ +T++ V I T A+Q ++
Sbjct: 239 GDICELMVDPYGSDVVQLLMRRCSSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLT 298
Query: 544 TL--KSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVEL 601
+ ++ +Q +V ++ + L K+ + V C L P + + L + NC ++
Sbjct: 299 CINERAKDQIPRIVDVVRTVALQLSKSNHAIFVILACFR-LFPLHCRLLLELIVQNCHQI 357
Query: 602 ATDRHGCCVIQKCLTHSEG---EQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWA 658
A D+HGCC++Q C E R RL+ + +NAL L + +GNYVVQ++ EL +
Sbjct: 358 AIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYL 417
Query: 659 TMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGN 718
++ QL GNY L+ KY S+ V+K LK + R +I L +D ++LDP+GN
Sbjct: 418 IDALVRQLIGNYAHLARNKYGSHAVQKLLKLRWIDSRVIVIDLL---REIDTLLLDPFGN 474
Query: 719 YVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
YVIQ A SK V L I ++P++R + +G KVL
Sbjct: 475 YVIQTAWFVSKDDVRRMLRYHIERNIPMMRCNKFGNKVL 513
Score = 120 (47.3 bits), Expect = 0.00088, P = 0.00088
Identities = 41/171 (23%), Positives = 84/171 (49%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIE---KIFVEIIDHIVELMTDPFGNYLV 504
+E + + +A DQHGC LQ ++ + ++E ++ +E I + + L + +GNY+V
Sbjct: 347 LELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVV 406
Query: 505 QKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKPGI 562
Q ++E+ N +++ + L R + AVQK+++ L+ + +V+ L+ I
Sbjct: 407 QYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLK-LRWIDSRVIVIDLLRE-I 464
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQK 613
TL+ + GN+V Q + + L N + ++ G V++K
Sbjct: 465 DTLLLDPFGNYVIQTAWFVSKDDVRRMLRYHIERNIPMMRCNKFGNKVLEK 515
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 402 (146.6 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 97/295 (32%), Positives = 162/295 (54%)
Query: 445 YNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLV 504
Y + + + AKD LQ I++G E I+KIF +I H+ ELM D +G+ +
Sbjct: 145 YGYMYGIRNTLLSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVF 204
Query: 505 QKLLEVCNEDQRMQILQAITRKAGDLVRI-----STRAVQKVIETLKSPEQFSLVVSSLK 559
+KL+E C ++Q ++L + + + VR+ T A+Q ++ +L S EQ S + +L
Sbjct: 205 RKLMEKCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLC 264
Query: 560 PGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSE 619
+ L K++ + V C P ++++L + NC ++A D++GCC+++K + S
Sbjct: 265 YVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSS 324
Query: 620 GEQRHRLVSKITSNALILSQDPFG----------NYVVQFVFELRLPWATMDILDQLEGN 669
E R L+ +I S A+ L + +G NYVVQ++ L+ T + L+GN
Sbjct: 325 RELRDPLIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGN 384
Query: 670 YGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAA 724
Y LS KY S+VV+KCL+ + R II EL+S+ +D +++DPYG+YVIQ A
Sbjct: 385 YVQLSYDKYGSHVVQKCLESREFSSR-RIIAELLSD--IDSLLVDPYGDYVIQTA 436
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 414 (150.8 bits), Expect = 1.6e-35, P = 1.6e-35
Identities = 99/322 (30%), Positives = 176/322 (54%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
++++ G I + DQ+G RFLQ+KI ++ +++F EI+ + ++L D FGNY+ QKL
Sbjct: 457 LKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYVAQKL 516
Query: 508 LEVCNEDQRMQILQAITRKAG--DLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E N+ Q+ + + + K L R VQK +E + + +Q + +V ++P ++
Sbjct: 517 YEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQ-AWLVREIQPQVLEC 575
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+++ +GNHV Q+ Y+ +Y+K L + +T +GC VIQ+ L E R
Sbjct: 576 VESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVDRRF 635
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++++I + A L +D +GNYV+Q + + +++ ++ S K++SNVVEK
Sbjct: 636 ILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWYSKHKFASNVVEK 695
Query: 686 CLKYGDDERRAHIIQELISNA--H---LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
+++G++ +R II L + H L ++M D YGNYV Q L G +ALVD I
Sbjct: 696 SIEFGNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAALVDRI 755
Query: 741 RPHVPVLRTSPYGKKVLSCNSL 762
+P + L+ S GK++ + L
Sbjct: 756 KPLLVHLKKSNCGKQIAAIEKL 777
Score = 162 (62.1 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 43/170 (25%), Positives = 84/170 (49%)
Query: 588 KFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+F + + VE + D++G +Q+ + + +++ R+ +I N L L+QD FGNYV
Sbjct: 454 RFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYVA 513
Query: 648 QFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAH 707
Q ++E + + + LS+ Y VV+K L++ +++A +++E+
Sbjct: 514 QKLYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREI--QPQ 571
Query: 708 LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ + + +GN+VIQ + LVD+ R V T YG +V+
Sbjct: 572 VLECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVI 621
Score = 150 (57.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 50/223 (22%), Positives = 103/223 (46%)
Query: 441 QPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFV-EIIDHIVELMTDPF 499
Q QK E++ ++ ++ +GCR +Q+ + E L D + V EI ++E +
Sbjct: 522 QTQKKMMTEDMRSKVVKLSLSPYGCRVVQKAL-EHVLTDQQAWLVREIQPQVLECVESQH 580
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLV 554
GN+++QK+ E ++ + G + R ST R +Q+++E + ++ +
Sbjct: 581 GNHVIQKVFEYVPTQYTKGLVDSFR---GQVERQSTHSYGCRVIQRMLEFCEDVDR-RFI 636
Query: 555 VSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKC 614
++ ++ LI++ GN+V Q + E F+ + + + + V++K
Sbjct: 637 LAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWYSKHKFASNVVEKS 696
Query: 615 LTHSEGEQRHRLVSKITSNA------LI-LSQDPFGNYVVQFV 650
+ QR +++++T+ LI L D +GNYV Q V
Sbjct: 697 IEFGNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKV 739
Score = 146 (56.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 65/272 (23%), Positives = 118/272 (43%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEII-DHIVELMTDPFGN 501
+K E+ +A+D G ++ +K+ E + +K+ E + +V+L P+G
Sbjct: 488 EKDRVFREILPNFLQLAQDIFG-NYVAQKLYEHGNQTQKKMMTEDMRSKVVKLSLSPYGC 546
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS--TRAVQKVIETLKSPEQFSL-VVSSL 558
+VQK LE DQ+ +++ I + + V +QKV E + P Q++ +V S
Sbjct: 547 RVVQKALEHVLTDQQAWLVREIQPQVLECVESQHGNHVIQKVFEYV--PTQYTKGLVDSF 604
Query: 559 KPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV-ELATDRHGCCVIQKCLTH 617
+ + + G V QR L + +F+ A C L D++G VIQ +
Sbjct: 605 RGQVERQSTHSYGCRVIQRMLEFCEDVDRRFIL-AEIRACAPRLIEDQYGNYVIQHIIQS 663
Query: 618 SEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQL----EGNYG-- 671
E E R ++ + L S+ F + VV+ E DI+ +L EG+
Sbjct: 664 GEEEDRSFMIEMVKQKLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRLTAKTEGHETQL 723
Query: 672 -DLSMQKYSSNVVEKCLKYGDDERRAHIIQEL 702
+L +Y + V +K L + RA ++ +
Sbjct: 724 IELMADQYGNYVFQKVLGHLSGVERAALVDRI 755
Score = 37 (18.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 56 LAEKLKNNGNLDEGKILVNKSQQSPIK 82
+A+KL +GN + K++ + +K
Sbjct: 512 VAQKLYEHGNQTQKKMMTEDMRSKVVK 538
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 400 (145.9 bits), Expect = 7.1e-34, P = 7.1e-34
Identities = 89/272 (32%), Positives = 151/272 (55%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
L+ +R P+ Y ++++ G KDQHG RF+Q+K+ E T E+ E IF EI + EL
Sbjct: 570 LEEVRSNPKPYQ-LKDIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYEL 628
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFS 552
MTD FGNY++QK E Q+ +L+++ +L R VQ+ +E + + Q
Sbjct: 629 MTDVFGNYVIQKYFEYGTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLR 688
Query: 553 LVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLP-EYSKFLFQATTNNCVELATDRHGCCVI 611
++ LK I+ K+ NGNHV Q+ + + P +++ + N L+T +GC VI
Sbjct: 689 -IIEELKDHILICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVI 747
Query: 612 QKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
Q+ L +S+ + + ++S++ + L D +GNYV+Q + E IL+ + G+
Sbjct: 748 QRLLEYSDIDDQKLILSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVV 807
Query: 672 DLSMQKYSSNVVEKCLKYGDDERRAHIIQELI 703
S K++SNV+EKC+K+GD +R I+ E++
Sbjct: 808 QFSKHKFASNVIEKCIKFGDINQRKRILHEVM 839
Score = 201 (75.8 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 61/235 (25%), Positives = 116/235 (49%)
Query: 496 TDPFGNYLVQK-LLEVCNEDQRMQILQAITRKAGDLVRIS--TRAVQKVIETLKSPEQFS 552
T+ GN++ + LLE + + L+ I A + + +R +Q+ + E+
Sbjct: 557 TNGGGNHIYRSPLLEEVRSNPKPYQLKDIYGHAIEFTKDQHGSRFIQQKLPEATEEEK-E 615
Query: 553 LVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQ 612
+ + + L+ ++ GN+V Q+ Y + L ++ + EL+ +GC V+Q
Sbjct: 616 TIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQVLLESMIGHIHELSLQMYGCRVVQ 675
Query: 613 KCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMD-ILDQLEGNYG 671
+ L + E + R++ ++ + LI +D GN+V+Q E P++ + IL L+
Sbjct: 676 RALEAIDNEGQLRIIEELKDHILICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIY 735
Query: 672 DLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQ 726
LS Y V+++ L+Y D + + I+ +L N L ++LD YGNYVIQ L+
Sbjct: 736 HLSTHPYGCRVIQRLLEYSDIDDQKLILSQL--NNFLYYLILDQYGNYVIQHILE 788
Score = 125 (49.1 bits), Expect = 0.00055, P = 0.00055
Identities = 51/223 (22%), Positives = 96/223 (43%)
Query: 486 EIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIE 543
+I H +E D G+ +Q+ L E+++ I I + +L+ +QK E
Sbjct: 584 DIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFE 643
Query: 544 TLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELAT 603
+ Q +++ S+ I L M G V QR L + E + + ++ +
Sbjct: 644 -YGTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCK 702
Query: 604 DRHGCCVIQKCLTHSEGEQRHRLVSKITSNALI-LSQDPFGNYVVQFVFELRLPWATMDI 662
D++G VIQK + + + R + N + LS P+G V+Q + E I
Sbjct: 703 DQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLI 762
Query: 663 LDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
L QL L + +Y + V++ L+ G E + I++ ++ +
Sbjct: 763 LSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGS 805
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 371 (135.7 bits), Expect = 9.2e-31, P = 9.2e-31
Identities = 83/245 (33%), Positives = 140/245 (57%)
Query: 458 MAKDQHGCRFLQRKISEGTLEDIEK--IFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQ 515
+A DQ GCRFLQ+K+ + ++ + ++ +I ++L+ DPFGNYLVQKL + +Q
Sbjct: 218 LATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTAEQ 277
Query: 516 RMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPG------IVTLIK 567
+ ++Q I + + TR++QK+I+T+ + Q L++ +VTLI
Sbjct: 278 KTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTLIN 337
Query: 568 NMNGNHVAQRCLLYLLPEYSKFLFQATT--NNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
++NGNHV Q+C+ P F+ A NN + ++T +HGCCV+QK L+ +Q +
Sbjct: 338 DLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQIFK 397
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELR-LPWATM-DILDQLEGNYGDLSMQKYSSNVV 683
+ KI L D FGNY++QF+ +++ L + + ++ ++L LS K+SSNVV
Sbjct: 398 ISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCLKFSSNVV 457
Query: 684 EKCLK 688
EK +K
Sbjct: 458 EKFIK 462
Score = 139 (54.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 51/180 (28%), Positives = 92/180 (51%)
Query: 599 VELATDRHGCCVIQKCL-THSEGEQ-RHRLVSKITSNALILSQDPFGNYVVQFVFE-LRL 655
++LATD+ GC +QK L T SE R + +I L L DPFGNY+VQ + + L
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 656 PWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHII-----QELISNAHLDQ 710
T+ ++ + N +S+ +Y + ++K + D+E + +I QE S +
Sbjct: 276 EQKTL-LIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVT 334
Query: 711 VMLDPYGNYVIQAALQQSKGGVHSALVDAI--RPHVPVLRTSPYG----KKVLSCNSLKK 764
++ D GN+VIQ + + ++DAI + ++ + T +G +K+LS +L++
Sbjct: 335 LINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQ 394
Score = 134 (52.2 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 55/222 (24%), Positives = 103/222 (46%)
Query: 520 LQAITRKAGDLVRIST-----RAVQKVIETLKSPEQF-SLVVSSLKPGIVTLIKNMNGNH 573
+ A+ + D ++++T R +QK +ET L+ +KP + LI + GN+
Sbjct: 205 ISALPLRDLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNY 264
Query: 574 VAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSK---- 629
+ Q+ YL E L Q N +++ +++G +QK + + E + L+ K
Sbjct: 265 LVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQ 324
Query: 630 -ITS--NALILSQDPFGNYVVQ-FVFELRLPWATMDILDQL--EGNYGDLSMQKYSSNVV 683
TS + L D GN+V+Q +F+ P I+D + + N +S K+ V+
Sbjct: 325 EFTSIEQVVTLINDLNGNHVIQKCIFKFS-PSKFGFIIDAIVEQNNIITISTHKHGCCVL 383
Query: 684 EKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAAL 725
+K L ++ I +++ L ++ D +GNY+IQ L
Sbjct: 384 QKLLSVCTLQQIFKISVKIVQ--FLPGLINDQFGNYIIQFLL 423
Score = 127 (49.8 bits), Expect = 0.00030, P = 0.00030
Identities = 34/117 (29%), Positives = 62/117 (52%)
Query: 437 IIRPQPQKYNSVEEVT---GRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVE 493
I + P K+ + + I ++ +HGC LQ+ +S TL+ I KI V+I+ +
Sbjct: 349 IFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPG 408
Query: 494 LMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDL-----VRISTRAVQKVIETL 545
L+ D FGNY++Q LL++ D + + + R + +L ++ S+ V+K I+ L
Sbjct: 409 LINDQFGNYIIQFLLDIKELDFYL-LAELFNRLSNELCQLSCLKFSSNVVEKFIKKL 464
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 360 (131.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 81/265 (30%), Positives = 142/265 (53%)
Query: 447 SVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQK 506
S++++ G KDQHG RF+QR+++ + E IF EI D +EL D FGNY++QK
Sbjct: 535 SLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQK 594
Query: 507 LLEVCNEDQRMQILQAI--TRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVT 564
E ++ Q+ ++ K L + R +QK +E + S ++ LV+ L ++
Sbjct: 595 FFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLE-LSDSVLQ 653
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+IK+ NGNHV Q+ + + E F+ + T + L+T +GC VIQ+ L E +
Sbjct: 654 MIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQE 713
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFEL------RLPWATMDILDQLEGNYGDLSMQKY 678
+++++ L QD +GNYV+Q+V + + +I++ + N + S K+
Sbjct: 714 SILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKF 773
Query: 679 SSNVVEKCLKYGDDERRAHIIQELI 703
+SNVVEK + YG ++ II +++
Sbjct: 774 ASNVVEKSILYGSKNQKDLIISKIL 798
Score = 222 (83.2 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 53/159 (33%), Positives = 89/159 (55%)
Query: 599 VELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWA 658
+E D+HG IQ+ L S ++ + ++I +A+ LS D FGNYV+Q FE
Sbjct: 544 LEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQ 603
Query: 659 TMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGN 718
++DQ +GN LS+Q Y+ V++K L+Y D +R ++ EL S++ L Q++ D GN
Sbjct: 604 KNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLEL-SDSVL-QMIKDQNGN 661
Query: 719 YVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+VIQ A++ ++ ++ H+ L T YG +V+
Sbjct: 662 HVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVI 700
Score = 217 (81.4 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 61/233 (26%), Positives = 114/233 (48%)
Query: 535 TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQAT 594
+R +Q+ + T + E+ ++ + ++ + L ++ GN+V Q+ + L
Sbjct: 553 SRFIQRELATSPASEK-EVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQF 611
Query: 595 TNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELR 654
N +L+ + C VIQK L + + QR LV +++ + L + +D GN+V+Q E
Sbjct: 612 KGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIET- 670
Query: 655 LPWATMD-ILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVML 713
+P + IL L G+ LS Y V+++ L++G E + I+ EL + ++
Sbjct: 671 IPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNEL--KDFIPYLIQ 728
Query: 714 DPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTS--PYGKKVLSCNSLKK 764
D YGNYVIQ LQQ + + +VD + + + + Y K + N ++K
Sbjct: 729 DQYGNYVIQYVLQQDQF-TNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEK 780
Score = 166 (63.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 51/213 (23%), Positives = 106/213 (49%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK V++ G + ++ + CR +Q+ + ++ +E+ D +++++ D GN+
Sbjct: 603 QKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNH 662
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
++QK +E ++ IL ++T G + +ST R +Q+++E S +Q S +++
Sbjct: 663 VIQKAIETIPIEKLPFILSSLT---GHIYHLSTHSYGCRVIQRLLEFGSSEDQES-ILNE 718
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLY------LLPEYSKFLFQATTNNCVELATDRHGCCVI 611
LK I LI++ GN+V Q L + + + + + NN VE + + V+
Sbjct: 719 LKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVV 778
Query: 612 QKCLTHSEGEQRHRLVSKIT----SNALILSQD 640
+K + + Q+ ++SKI ++AL L D
Sbjct: 779 EKSILYGSKNQKDLIISKILPRDKNHALNLEDD 811
Score = 138 (53.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 47/184 (25%), Positives = 85/184 (46%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ +TG IY ++ +GCR +QR + G+ ED E I E+ D I L+ D +GNY++Q +
Sbjct: 680 LSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYV 739
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIK 567
L+ +DQ T K ++V I ++ V + + + ++ I+ K
Sbjct: 740 LQ---QDQ-------FTNK--EMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSK 787
Query: 568 NMNGNHVAQRCLLYLLPEYSKFLFQATTNN-CVELATDRHGCCVIQKCLTHSEGEQRHRL 626
N +++ +LP ++ + + D+ VIQK + SEGE + +
Sbjct: 788 NQKDLIISK-----ILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLI 842
Query: 627 VSKI 630
V I
Sbjct: 843 VIAI 846
Score = 39 (18.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 15/78 (19%), Positives = 31/78 (39%)
Query: 337 INHLNSAFSSTDCNPMHVLGKVGKQSFPEKILTRSQGLNTLKAVKFGTVGGHESLNHINQ 396
+NHL +S++ P++ G S E + G + + + + + + +N
Sbjct: 141 VNHLLGQYSASIAGPVYYNGNDNNNSGGEGFFEKF-GKSLIDGTR--ELESQDRPDAVNT 197
Query: 397 SGKLLSNGHLCLSLSTPN 414
+ +S SL T N
Sbjct: 198 QSQFISKSVSNASLDTQN 215
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 282 (104.3 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 64/199 (32%), Positives = 107/199 (53%)
Query: 453 GRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCN 512
G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK E +
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 513 EDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVTLIKNM 569
+Q++ + + I L R +QK +E + S +Q + +V L ++ +K+
Sbjct: 62 LEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQ 121
Query: 570 NGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSK 629
NGNHV Q+C+ + P+ +F+ A D++G VIQ L H E + ++V++
Sbjct: 122 NGNHVVQKCIECVQPQSLQFIIDAFKGQ------DQYGNYVIQHVLEHGRPEDKSKIVAE 175
Query: 630 ITSNALILSQDPFGNYVVQ 648
I N L+LSQ F + VV+
Sbjct: 176 IRGNVLVLSQHKFASNVVE 194
Score = 191 (72.3 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 57/217 (26%), Positives = 99/217 (45%)
Query: 490 HIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKS 547
HI+E D G+ +Q LE +R + I + A L+ +QK E S
Sbjct: 3 HIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE-FGS 61
Query: 548 PEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKF--LFQATTNNCVELATDR 605
EQ + ++ +++L M G V Q+ L ++ + + + + ++ D+
Sbjct: 62 LEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQ 121
Query: 606 HGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQ 665
+G V+QKC+ + + ++ QD +GNYV+Q V E P I+ +
Sbjct: 122 NGNHVVQKCIECVQPQSLQFIIDAFKG------QDQYGNYVIQHVLEHGRPEDKSKIVAE 175
Query: 666 LEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQEL 702
+ GN LS K++SNVVEKC+ + RA +I E+
Sbjct: 176 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 150 (57.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 37/145 (25%), Positives = 76/145 (52%)
Query: 599 VELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWA 658
+E + D+HG IQ L + +R + ++I A L D FGNYV+Q FE
Sbjct: 5 MEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQ 64
Query: 659 TMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS--NAHLDQVMLDPY 716
+ + +++ G+ L++Q Y V++K L++ +++ +I E++ + H+ + + D
Sbjct: 65 KLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRELDGHVLKCVKDQN 122
Query: 717 GNYVIQAALQQSKGGVHSALVDAIR 741
GN+V+Q ++ + ++DA +
Sbjct: 123 GNHVVQKCIECVQPQSLQFIIDAFK 147
Score = 150 (57.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 52/209 (24%), Positives = 95/209 (45%)
Query: 433 MDLKIIRPQPQKYNSV-EEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHI 491
+ LK+ R P + V E+ Y + D G +Q+ G+LE + I H+
Sbjct: 17 IQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHV 76
Query: 492 VELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKA-GDLVRI-----STRAVQKVIETL 545
+ L +G ++QK LE DQ Q++ + R+ G +++ VQK IE +
Sbjct: 77 LSLALQMYGCRVIQKALEFIPSDQ--QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECV 134
Query: 546 KSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDR 605
+ P+ ++ + K G ++ GN+V Q L + PE + N + L+ +
Sbjct: 135 Q-PQSLQFIIDAFK-G-----QDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHK 187
Query: 606 HGCCVIQKCLTHSEGEQRHRLVSKI-TSN 633
V++KC+TH+ +R L+ ++ T N
Sbjct: 188 FASNVVEKCVTHASRTERAVLIDEVCTMN 216
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 291 (107.5 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 79/330 (23%), Positives = 160/330 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q + + +V IY + ++GC ++ +K+ E E+ E I ++ + L D +G+Y
Sbjct: 187 QVHIDMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSY 246
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKP 560
+ Q + ++ +E + + + L R +QK +E+L S E + L+
Sbjct: 247 VAQSIFDLKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESL-SDEYKCKIFKELQE 305
Query: 561 GIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG 620
++ I + NGNHV Q+C+ L Y + L++ +GC ++Q+
Sbjct: 306 DLIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNE 365
Query: 621 EQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSS 680
+Q +RL +I + L ++ +GNYV+Q FE I D++ + LS KY+
Sbjct: 366 QQINRLNEQIIKK-IHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYAC 424
Query: 681 NVVEKCLKYGDDERRAHIIQELISNA-----HLDQVMLDPYGNYVIQAALQQSKGGVHSA 735
N++EK L + + + II++++++ ++ + D YGN+++Q L + +
Sbjct: 425 NIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNF 484
Query: 736 LVDAIRPHVPVLRTSPYGKKVL-SCNSLKK 764
++ I ++ L+ YGK +L + N+L+K
Sbjct: 485 IIKTIIENLDKLKDETYGKYILRAINNLEK 514
Score = 161 (61.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 49/221 (22%), Positives = 106/221 (47%)
Query: 438 IRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTD 497
++ + K +E + +GCR +Q+ + + E KIF E+ + +++ +
Sbjct: 254 LKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICH 313
Query: 498 PFGNYLVQKLLEV--CNE-DQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLV 554
GN+++QK +EV C+ D + I++ R VQ++ E + + +Q + +
Sbjct: 314 QNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHA-YGCRIVQRIYE-IGNEQQINRL 371
Query: 555 VSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKC 614
+ I LIKN GN+V Q+C + + N+ +L++ ++ C +I+K
Sbjct: 372 NEQIIKKI-HLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKI 430
Query: 615 LTHSEGEQRHRLVSKITS-------NALILSQDPFGNYVVQ 648
L E + + +++ KI + N + + +D +GN+++Q
Sbjct: 431 LLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQ 471
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 291 (107.5 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 79/330 (23%), Positives = 160/330 (48%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q + + +V IY + ++GC ++ +K+ E E+ E I ++ + L D +G+Y
Sbjct: 187 QVHIDMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSY 246
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKP 560
+ Q + ++ +E + + + L R +QK +E+L S E + L+
Sbjct: 247 VAQSIFDLKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESL-SDEYKCKIFKELQE 305
Query: 561 GIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG 620
++ I + NGNHV Q+C+ L Y + L++ +GC ++Q+
Sbjct: 306 DLIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNE 365
Query: 621 EQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSS 680
+Q +RL +I + L ++ +GNYV+Q FE I D++ + LS KY+
Sbjct: 366 QQINRLNEQIIKK-IHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYAC 424
Query: 681 NVVEKCLKYGDDERRAHIIQELISNA-----HLDQVMLDPYGNYVIQAALQQSKGGVHSA 735
N++EK L + + + II++++++ ++ + D YGN+++Q L + +
Sbjct: 425 NIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNF 484
Query: 736 LVDAIRPHVPVLRTSPYGKKVL-SCNSLKK 764
++ I ++ L+ YGK +L + N+L+K
Sbjct: 485 IIKTIIENLDKLKDETYGKYILRAINNLEK 514
Score = 161 (61.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 49/221 (22%), Positives = 106/221 (47%)
Query: 438 IRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTD 497
++ + K +E + +GCR +Q+ + + E KIF E+ + +++ +
Sbjct: 254 LKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICH 313
Query: 498 PFGNYLVQKLLEV--CNE-DQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLV 554
GN+++QK +EV C+ D + I++ R VQ++ E + + +Q + +
Sbjct: 314 QNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHA-YGCRIVQRIYE-IGNEQQINRL 371
Query: 555 VSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKC 614
+ I LIKN GN+V Q+C + + N+ +L++ ++ C +I+K
Sbjct: 372 NEQIIKKI-HLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKI 430
Query: 615 LTHSEGEQRHRLVSKITS-------NALILSQDPFGNYVVQ 648
L E + + +++ KI + N + + +D +GN+++Q
Sbjct: 431 LLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQ 471
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 293 (108.2 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 85/310 (27%), Positives = 151/310 (48%)
Query: 461 DQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQIL 520
D G +Q+ + LE + + + + + DP G +QKL++V ++ ++I
Sbjct: 488 DPFGNYLIQKLFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEI- 546
Query: 521 QAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLL 580
ITR + + +R + K +F+ + S N +G AQ
Sbjct: 547 --ITRNLYSNIVVLSRDLNGNHVVQKILTKFNTISSDSNSSD----SNRDG---AQH--- 594
Query: 581 YLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQD 640
++F+F N + +A RHGCCV+Q+CL + +Q +L +I + + LS D
Sbjct: 595 ---QNQNQFIFDIIQANLLYIACHRHGCCVLQRCLDYGNKQQCQQLSQEIAKHTIKLSLD 651
Query: 641 PFGNYVVQFVFEL--------RLPWATMDILDQ-LEGNYGDLSMQKYSSNVVEKCLKYGD 691
P+GNYVVQ+V +DI+ Q ++ N+ LS+ K+ SNV+EKCLK
Sbjct: 652 PYGNYVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSNFIQLSLHKFGSNVIEKCLKISS 711
Query: 692 DERRAHIIQELISNAH---LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLR 748
+ +I LI H +Q++ DP+GNYV+Q +L + L + P +P ++
Sbjct: 712 ISK--DLIDNLIVLDHGQAFNQLLNDPFGNYVLQTSLDVANLEQFEQLSKILLPLLPNIK 769
Query: 749 TSPYGKKVLS 758
++P+G+++L+
Sbjct: 770 STPHGRRILN 779
Score = 287 (106.1 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 103/335 (30%), Positives = 167/335 (49%)
Query: 444 KYNS--VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
KY+ +++ TG I + KDQHGCRFLQR++ T + IF EI VELM DPFGN
Sbjct: 435 KYSDAKLQDFTGSILTLCKDQHGCRFLQRELINETNATL--IFNEIYFKAVELMIDPFGN 492
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVS 556
YL+QKL + N +QR+ + I + + +L RI+ TR++QK+I+ +++ E+ ++
Sbjct: 493 YLIQKLFTMINLEQRLVL---INQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITR 549
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+L IV L +++NGNHV Q+ L +KF ++ +N + ++R G
Sbjct: 550 NLYSNIVVLSRDLNGNHVVQKIL-------TKFNTISSDSNSSD--SNRDGA-------Q 593
Query: 617 HSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQ 676
H Q + I +N L ++ G V+Q + + ++ + LS+
Sbjct: 594 HQN--QNQFIFDIIQANLLYIACHRHGCCVLQRCLDYGNKQQCQQLSQEIAKHTIKLSLD 651
Query: 677 KYSSNVVEKCL-KY---GDDERRAH-----IIQELISNAHLDQVMLDPYGNYVIQAALQQ 727
Y + VV+ L KY GD + + IIQE+ SN Q+ L +G+ VI+ L+
Sbjct: 652 PYGNYVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSN--FIQLSLHKFGSNVIEKCLKI 709
Query: 728 SKGGVHSALVD--AIRPHVPV---LRTSPYGKKVL 757
S + L+D + H L P+G VL
Sbjct: 710 SS--ISKDLIDNLIVLDHGQAFNQLLNDPFGNYVL 742
Score = 127 (49.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 69/300 (23%), Positives = 130/300 (43%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISE-GTLEDIEKIFVEIIDHIVELMTDPFGN 501
Q+ + + + ++ +A D HG R LQ+ I T E+IE I + +IV L D GN
Sbjct: 506 QRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDLNGN 565
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPG 561
++VQK+L N + D S R + + Q + ++
Sbjct: 566 HVVQKILTKFNTISS-------DSNSSD----SNR------DGAQHQNQNQFIFDIIQAN 608
Query: 562 IVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT-HSEG 620
++ + + +G V QRCL Y + + L Q + ++L+ D +G V+Q L +S G
Sbjct: 609 LLYIACHRHGCCVLQRCLDYGNKQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSVG 668
Query: 621 EQRHR--------LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQL----EG 668
++ +I SN + LS FG+ V++ L++ + D++D L G
Sbjct: 669 GDAQNTDNQVIDIIIQEIKSNFIQLSLHKFGSNVIEKC--LKISSISKDLIDNLIVLDHG 726
Query: 669 N-YGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQ 727
+ L + + V++ L + E+ + + L+ L + P+G ++ +QQ
Sbjct: 727 QAFNQLLNDPFGNYVLQTSLDVANLEQFEQLSKILLPL--LPNIKSTPHGRRILNK-IQQ 783
Score = 47 (21.6 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 81 IKRIPQEEANLPD-DQSLTSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNG- 138
+++I E D DQ+++S+ + ++G IP PV+ N + N + P G
Sbjct: 205 LEKILDSEGRTKDNDQNISSSKPQF-YDGAIPFVPVNQ--NVTGNGNSQI----PPPLGN 257
Query: 139 LKEPVSNVDSQL 150
+ P+SN+ L
Sbjct: 258 IPPPMSNMPPPL 269
Score = 42 (19.8 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 219 LSNVPVPGVEFPVMSDPQQYFADTQSSFPY--LHSQHLNQPP 258
L N+P P P P + S FP+ + ++ PP
Sbjct: 255 LGNIPPPMSNMPPPLPPHSMGLPSFSPFPHPSFYQGYIPSPP 296
Score = 40 (19.1 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 63 NGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSL 97
+GN + + PI+ E N P+DQ++
Sbjct: 143 SGNTKNTWNITQSAPPQPIRSNVSENGNHPNDQNV 177
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 300 (110.7 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 80/297 (26%), Positives = 149/297 (50%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G + ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 840 LRDLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKF 899
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + DQ++ + I L R +QK +E++ S +Q S +V L ++
Sbjct: 900 FEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLK 959
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 960 CVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTL 1019
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ ++ L Q N VQ L++ + + I ++ L +Y + V++
Sbjct: 1020 PILEELHQHSEQLGQK---NTSVQ----LKVTFKGLRIC-----SFDLLFKDQYGNYVIQ 1067
Query: 685 KCLKYGDDERRAHIIQELISNA-HLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
L++G E ++ I+ E+ L Q + + V++ + S + L+D +
Sbjct: 1068 HVLEHGRPEDKSKIVAEVRGKVLALSQ---HKFASNVVEKCVIHSSRAERALLIDEV 1121
Score = 255 (94.8 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 93/355 (26%), Positives = 158/355 (44%)
Query: 429 SSDSMDLKIIRPQPQKYNSVEE--VTGRI----YLMAKDQHGCRFLQRKISEGTLEDIEK 482
S D + I+ + ++ S E V G I Y + D G +Q+ G+ +
Sbjct: 851 SQDQHGSRFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSADQKLA 910
Query: 483 IFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKA-GDLVRI-----STR 536
+ I H++ L +G ++QK LE + DQ Q++ I R+ G +++
Sbjct: 911 LATRIRGHVLPLALQMYGCRVIQKALESISSDQ--QVISDIVRELDGHVLKCVKDQNGNH 968
Query: 537 AVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTN 596
VQK IE ++ P+ ++ + + + L + G V QR L
Sbjct: 969 VVQKCIECVQ-PQALQFIIDAFQGQVFVLSTHPYGCRVIQRIL----------------E 1011
Query: 597 NCVELATDRHGCCVIQKCLTHSE--GEQRHRLVSKITSNAL------ILSQDPFGNYVVQ 648
+C + T ++++ HSE G++ + K+T L +L +D +GNYV+Q
Sbjct: 1012 HCTQEQT----LPILEELHQHSEQLGQKNTSVQLKVTFKGLRICSFDLLFKDQYGNYVIQ 1067
Query: 649 FVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELI---SN 705
V E P I+ ++ G LS K++SNVVEKC+ + RA +I E+
Sbjct: 1068 HVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDG 1127
Query: 706 AH--LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLS 758
H L +M D Y NYV+Q + ++ ++ IRPH+ LR YGK +L+
Sbjct: 1128 PHSALYTMMKDQYANYVVQRMIDMAEPAQRKIIMHKIRPHIATLRKYTYGKHILA 1182
Score = 189 (71.6 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 73/293 (24%), Positives = 130/293 (44%)
Query: 404 GHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQH 463
GH+ L L+ GC I L S S D ++I + V E+ G + KDQ+
Sbjct: 917 GHV-LPLALQMYGCRVIQKA----LESISSDQQVIS------DIVRELDGHVLKCVKDQN 965
Query: 464 GCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAI 523
G +Q+ I + ++ I + L T P+G ++Q++LE C ++Q + IL+ +
Sbjct: 966 GNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEEL 1025
Query: 524 TRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLL 583
+ + L + +T KV T K L + S L K+ GN+V Q L +
Sbjct: 1026 HQHSEQLGQKNTSVQLKV--TFKG-----LRICSFD----LLFKDQYGNYVIQHVLEHGR 1074
Query: 584 PEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITS------NALI- 636
PE + + L+ + V++KC+ HS +R L+ ++ +AL
Sbjct: 1075 PEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGPHSALYT 1134
Query: 637 LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKY 689
+ +D + NYVVQ + ++ P I+ ++ + L Y +++ K KY
Sbjct: 1135 MMKDQYANYVVQRMIDMAEPAQRKIIMHKIRPHIATLRKYTYGKHILAKLEKY 1187
Score = 43 (20.2 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 31/126 (24%), Positives = 49/126 (38%)
Query: 74 NKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNG-GIPIEPVSPWANCN-SSPNYAVLL 131
+K + SP + E + D+ + A A NG + +P +SP AV
Sbjct: 250 SKEKSSPFEENKSPEMKVGDEGDTSKANARGLLNGMDRDCKDFNPTPGSRQASPTEAVER 309
Query: 132 DCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQE-LK 190
GL+ V + L + TN P ++F QE+ NM ++ Q L+
Sbjct: 310 LGPSQAGLEIMVQHHQHTLQAPNPV--TNKPPP--EDFQ----SQEAQNMGGMEQQAGLE 361
Query: 191 KLQVGY 196
LQ Y
Sbjct: 362 ALQFDY 367
Score = 39 (18.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 194 VGY---RQPVENFSGALPNAH 211
VGY RQP E G N H
Sbjct: 82 VGYFFQRQPGEQMGGCTGNKH 102
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 233 (87.1 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 58/192 (30%), Positives = 98/192 (51%)
Query: 459 AKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQ 518
++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK E + +Q++
Sbjct: 4 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 519 ILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQ 576
+ + I L R +QK +E + S +Q + L + G V Q
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ-----------VFALSTHPYGCRVIQ 112
Query: 577 RCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALI 636
R L + LP+ + + + + +L D++G VIQ L H E + ++V++I N L+
Sbjct: 113 RILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLV 172
Query: 637 LSQDPFGNYVVQ 648
LSQ F + VV+
Sbjct: 173 LSQHKFASNVVE 184
Score = 199 (75.1 bits), Expect = 8.6e-15, P = 8.6e-15
Identities = 61/212 (28%), Positives = 98/212 (46%)
Query: 493 ELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQ 550
E D G+ +Q LE +R + I + A L+ +QK E S EQ
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE-FGSLEQ 60
Query: 551 FSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCV 610
+ ++ +++L M G V Q+ L ++ + F L+T +GC V
Sbjct: 61 KLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVFA----------LSTHPYGCRV 110
Query: 611 IQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
IQ+ L H +Q ++ ++ + L QD +GNYV+Q V E P I+ ++ GN
Sbjct: 111 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 170
Query: 671 GDLSMQKYSSNVVEKCLKYGDDERRAHIIQEL 702
LS K++SNVVEKC+ + RA +I E+
Sbjct: 171 LVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 155 (59.6 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 51/203 (25%), Positives = 90/203 (44%)
Query: 433 MDLKIIRPQPQKYNSV-EEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHI 491
+ LK+ R P + V E+ Y + D G +Q+ G+LE + I H+
Sbjct: 13 IQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHV 72
Query: 492 VELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQF 551
+ L +G ++QK LE DQ Q+ T G R +Q+++E P+Q
Sbjct: 73 LSLALQMYGCRVIQKALEFIPSDQ--QVFALSTHPYG------CRVIQRILEHCL-PDQT 123
Query: 552 SLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVI 611
++ L L+++ GN+V Q L + PE + N + L+ + V+
Sbjct: 124 LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVV 183
Query: 612 QKCLTHSEGEQRHRLVSKI-TSN 633
+KC+TH+ +R L+ ++ T N
Sbjct: 184 EKCVTHASRTERAVLIDEVCTMN 206
Score = 150 (57.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 48/206 (23%), Positives = 95/206 (46%)
Query: 535 TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQAT 594
+R +Q +E +P + LV + + L+ ++ GN+V Q+ + E L +
Sbjct: 10 SRFIQLKLERA-TPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERI 68
Query: 595 TNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELR 654
+ + LA +GC VIQK L +Q+ LS P+G V+Q + E
Sbjct: 69 RGHVLSLALQMYGCRVIQKALEFIPSDQQ----------VFALSTHPYGCRVIQRILEHC 118
Query: 655 LPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLD 714
LP T+ IL++L + L +Y + V++ L++G E ++ I+ E+ N + +
Sbjct: 119 LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLV--LSQH 176
Query: 715 PYGNYVIQAALQQSKGGVHSALVDAI 740
+ + V++ + + + L+D +
Sbjct: 177 KFASNVVEKCVTHASRTERAVLIDEV 202
Score = 147 (56.8 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 52/191 (27%), Positives = 85/191 (44%)
Query: 567 KNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRL 626
++ +G+ Q L P + +F +L D G VIQK EQ+ L
Sbjct: 5 QDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL 64
Query: 627 VSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKC 686
+I + L L+ +G V+Q E +P DQ LS Y V+++
Sbjct: 65 AERIRGHVLSLALQMYGCRVIQKALEF-IP------SDQ---QVFALSTHPYGCRVIQRI 114
Query: 687 LKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPV 746
L++ ++ I++EL + H +Q++ D YGNYVIQ L+ + S +V IR +V V
Sbjct: 115 LEHCLPDQTLPILEEL--HQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLV 172
Query: 747 LRTSPYGKKVL 757
L + V+
Sbjct: 173 LSQHKFASNVV 183
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 228 (85.3 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 58/193 (30%), Positives = 102/193 (52%)
Query: 466 RFLQRKISEG--TLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAI 523
R +++ I G T E+IE I ++D + EL +D GN +VQK E C++ + +L+ I
Sbjct: 169 REIRKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERI 228
Query: 524 TR--KAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLY 581
A + + T A QK+I+ + +Q L+V L+P L + GN+VAQ CL +
Sbjct: 229 APYLAAIGIHKNGTWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLRF 288
Query: 582 LLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG--EQRHRLVSKITSNALILSQ 639
P+ + FLF+ +C E+ R G I+ CL + EQ+ +V+ I N+ +L+
Sbjct: 289 KYPK-NTFLFEVMARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINSHLLAT 347
Query: 640 DPFGNYVVQFVFE 652
+ G ++ ++ +
Sbjct: 348 NSNGMLLLTWLLD 360
Score = 124 (48.7 bits), Expect = 0.00045, P = 0.00045
Identities = 40/213 (18%), Positives = 94/213 (44%)
Query: 503 LVQKLLEVCNEDQRM--QILQAI-TRKAGDLVRISTRAVQKVIET-LKSPEQFSLVVSSL 558
+V ++ E+ ++ +IL + T ++ R ++K I++ + E+ ++ S+
Sbjct: 133 IVDSMIASAIENNKVATEILPPVETLRSRQFEASKLREIRKNIDSGFYTQEEIEVIARSM 192
Query: 559 KPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHS 618
+ L + GN V Q+ Y + + + + ++G QK + +
Sbjct: 193 LDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNGTWAAQKIIDVA 252
Query: 619 EGEQRHRLVSK-ITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQK 677
E++ L+ K + +L D FGNYV Q + P T + + + + ++ +
Sbjct: 253 STEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLRFKYPKNTF-LFEVMARHCCEIGQSR 311
Query: 678 YSSNVVEKCLKYGDD--ERRAHIIQELISNAHL 708
+ + + CL+ + E++A ++ +I N+HL
Sbjct: 312 FGARAIRACLENENATFEQQALVVASIIINSHL 344
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 231 (86.4 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 79/317 (24%), Positives = 150/317 (47%)
Query: 457 LMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQR 516
+++ DQ FLQ+K+ + + + I II I LM + FGN+LVQ+ E
Sbjct: 368 IVSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFE---HGTA 424
Query: 517 MQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNG 571
QI Q + G++++++T VQK I+ + + +++ VT++ +
Sbjct: 425 PQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMHHY-A 483
Query: 572 NHVAQRCLLYLLPEYSKFLFQATTNNCV-----ELATDRHGCCVIQKCLTHSEGEQRHRL 626
HV Q+ EY + NN + E+A +G V+Q + + +
Sbjct: 484 CHVWQKLFETQWYEYPVNVMNRV-NNALRGKWHEVAVGENGSLVVQNMFENCVEKDKREC 542
Query: 627 VSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKC 686
+ +I + +++ +GN+VVQ + E ++D L + S+ +++S V+EK
Sbjct: 543 IEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKA 602
Query: 687 LKYGDDERRAHIIQELISNAHLDQ-------VMLDPYGNYVIQAALQQSKGGVHSALVDA 739
+K G + +++ I+NA +D+ + D YGNY+IQ +Q + + ++
Sbjct: 603 IKSGPKNFISLYLKQ-ITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITH 661
Query: 740 IRPHVPVLRTSPYGKKV 756
I+ H+ LR S YG+KV
Sbjct: 662 IKKHMVSLRGSKYGQKV 678
Score = 153 (58.9 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 47/208 (22%), Positives = 98/208 (47%)
Query: 554 VVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQK 613
+V S+ I L+ N GN + QRC + + + A N ++LATD GC V+QK
Sbjct: 394 IVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQK 453
Query: 614 CLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELR---LPWATMD-ILDQLEGN 669
+ + + + ++ ++ + + +V Q +FE + P M+ + + L G
Sbjct: 454 AIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGK 513
Query: 670 YGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSK 729
+ ++++ + S VV+ + ++ + I+E+I HLD + +GN+V+Q ++ +
Sbjct: 514 WHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIF--HLDGIARGQWGNWVVQHMVENGQ 571
Query: 730 GGVHSALVDAIRPHVPVLRTSPYGKKVL 757
G ++DA+ + KV+
Sbjct: 572 GEDLKRVIDALLNRAVEFSIDQFASKVI 599
Score = 148 (57.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 61/306 (19%), Positives = 135/306 (44%)
Query: 429 SSDSMDLKI-IRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEI 487
SS + K+ I K N V+ + +I+ + ++ G +QR GT I ++ +
Sbjct: 375 SSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQMGSAM 434
Query: 488 IDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAI--TRKAGDLVRISTRAVQKVIET- 544
+ ++++L TDPFG ++VQK ++ ED ++ ++ + T + + QK+ ET
Sbjct: 435 LGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLFETQ 494
Query: 545 -LKSPEQ-FSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELA 602
+ P + V ++L+ + NG+ V Q + + + + + +A
Sbjct: 495 WYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIA 554
Query: 603 TDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFE--------LR 654
+ G V+Q + + +GE R++ + + A+ S D F + V++ + L
Sbjct: 555 RGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLY 614
Query: 655 LPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLD 714
L T +D+ D++ +Y + ++++ ++ G + +I + H+ +
Sbjct: 615 LKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHI--KKHMVSLRGS 672
Query: 715 PYGNYV 720
YG V
Sbjct: 673 KYGQKV 678
Score = 44 (20.5 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 98 TSAFAELRFNGGIPIEPVSPWANCNSSPNYAVLLDCQHPNGLKEPV-----SNVDSQ--L 150
TSA + + + + A+ +SS NY+ L PV NV + L
Sbjct: 126 TSAPKSMSLQDSLSVPSATALADVSSSLNYSRKLSSNSIKSTNAPVFGTAVKNVTGENIL 185
Query: 151 MVASSFQSTNSVPSGFDEF 169
+SS ++ NS +G +F
Sbjct: 186 SASSSEENLNSNRNGDPKF 204
Score = 43 (20.2 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 78 QSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSP 117
++ + + L SL S +R++ P P+SP
Sbjct: 221 EASLANFQSDNCKLKSHNSLPSIRTNVRYSNSKPSTPLSP 260
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 230 (86.0 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 66/254 (25%), Positives = 129/254 (50%)
Query: 466 RFLQRKISEG--TLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAI 523
R ++++I G ++++IE+ + ++ I EL +D GN +VQKL E +E + +IL I
Sbjct: 658 RDIRKRIDNGNCSIQEIEETAIAMLPEIAELASDYLGNTVVQKLFEYSSEPIKERILVPI 717
Query: 524 TRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLY 581
G++ + T A QK+I+ K+P Q ++V +L+P V L + GN+V Q CL +
Sbjct: 718 APHLGEIGVHKNGTWAAQKIIDVAKTPAQMRMIVDALRPYTVPLFLDQYGNYVLQCCLRF 777
Query: 582 LLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT--HSEGEQRHRLVSKITSNALILSQ 639
P Y+ F+F+ + E+A R G ++ CL H+ +Q+ L + I +++ L+
Sbjct: 778 GSP-YNDFVFETMLSRMWEIAQGRFGARAMRACLESHHATKDQQRMLAAAIALHSVQLAT 836
Query: 640 DPFGNYVVQ-FVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHI 698
+ G ++ F+ P + +L + L K + V K + ++ +I
Sbjct: 837 NANGALLLTWFLDTCTFPHRRTVLAPRLVPHLVHLCTHKVAYLTVLKVINQRNEPEARNI 896
Query: 699 IQELISNAHLDQVM 712
+ + + + D+V+
Sbjct: 897 VLKALFFSPGDEVL 910
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 210 (79.0 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 70/277 (25%), Positives = 134/277 (48%)
Query: 491 IVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETL 545
+ LMTD G ++++ ++ + ++ +T + + I T R VQK++
Sbjct: 45 LFNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLG-- 102
Query: 546 KSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDR 605
KS + + +++ + + + ++V R ++ K L++ + ++LA D+
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 606 HGCCVIQKCLTHSEGEQ-RHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILD 664
HGC + +T ++ R +L+ + SNAL LS D GN+VVQ V L +I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 665 QLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS--NAHLDQVMLDPYGNYVIQ 722
L G +LS +KY S +VEK L+ +E ++ EL+ L ++ + +GN+V+
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEV--EESMVVVVVELLGCDGDRLMRLARNEFGNFVVV 280
Query: 723 AALQ---QSKGGVHSALVDAIRPHVPVLRTSPYGKKV 756
AL+ S+ + LV + P + +LR S +G +
Sbjct: 281 KALRFTKMSRMDLFWGLVQKLMPFIRLLRRS-HGSNI 316
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 209 (78.6 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 70/277 (25%), Positives = 134/277 (48%)
Query: 491 IVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETL 545
+ LMTD G ++++ ++ + ++ +T + + I T R VQK++
Sbjct: 45 LFNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLG-- 102
Query: 546 KSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDR 605
KS + + +++ + + + ++V R ++ K L++ + ++LA D+
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 606 HGCCVIQKCLTHSEGEQ-RHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILD 664
HGC + +T ++ R +L+ + SNAL LS D GN+VVQ V L +I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 665 QLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS--NAHLDQVMLDPYGNYVIQ 722
L G +LS +KY S +VEK L+ +E ++ EL+ L ++ + +GN+V+
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEV--EESMVVVVVELLGCDGDRLMRLARNEFGNFVVV 280
Query: 723 AALQQSKG---GVHSALVDAIRPHVPVLRTSPYGKKV 756
AL+ +K + LV + P + +LR S +G +
Sbjct: 281 KALRFTKEMRMDLFWGLVQKLMPFIHLLRRS-HGNNI 316
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 201 (75.8 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 53/161 (32%), Positives = 90/161 (55%)
Query: 601 LATDRHGCCVIQKCLTHSEGEQ-RHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
LA D++GC + + +T + R +L+ + +NAL+LS D +GN+VVQ V +LR T
Sbjct: 161 LAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCT 220
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS--NAHLDQVMLDPYG 717
+I D+L G +LS +KY S +VE+ L+ GD A ++ +L++ L ++ YG
Sbjct: 221 RNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPM-ATVVLDLLACKTEMLIRLARSEYG 279
Query: 718 NYVIQAALQQSK----GGVHSALVDAIRPHVPVLRTSPYGK 754
N+V+ AL+ + + LV+ + P+ +L SP K
Sbjct: 280 NFVVCKALELTNEILTADLFYGLVNRLMPYRHLLHRSPRSK 320
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 210 (79.0 bits), Expect = 5.1e-13, Sum P(4) = 5.1e-13
Identities = 53/193 (27%), Positives = 100/193 (51%)
Query: 466 RFLQRKISEG--TLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAI 523
R ++++I G T E++E I + +D + +L +D GN +VQKL + C++ + +L+ I
Sbjct: 751 RQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDYCSDPVKEMMLERI 810
Query: 524 TRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLY 581
+ + T A QK+++ + Q L+ L+P I L + GN+V Q CL +
Sbjct: 811 APHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQTCLKF 870
Query: 582 LLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSE--GEQRHRLVSKITSNALILSQ 639
P + F+F+A N +A R+G ++ CL + EQR + + IT ++ L+
Sbjct: 871 GAP-MNDFVFEAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYSVHLAM 929
Query: 640 DPFGNYVVQFVFE 652
+ G ++ ++ E
Sbjct: 930 NGNGTLLLTYLVE 942
Score = 121 (47.7 bits), Expect = 0.00098, Sum P(4) = 0.00098
Identities = 52/236 (22%), Positives = 104/236 (44%)
Query: 486 EIIDHIVELMTDPFGNYLVQKLLEVCNE-----DQRMQILQAITRKAGDLVRIST---RA 537
E+ D ++ ++ FG + K+ ++ N D QI +I+ KA R++ R
Sbjct: 696 EVYDDLINVVQS-FGFKDLSKIYQILNAACELTDFAAQI-PSIS-KAFSSRRLNAPKLRQ 752
Query: 538 VQKVIET-LKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTN 596
V+K I+ L + E+ + + + L + GN V Q+ Y + + +
Sbjct: 753 VRKRIDNGLCTQEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDYCSDPVKEMMLERIAP 812
Query: 597 NCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNAL-ILSQDPFGNYVVQFVFELRL 655
+ ++ ++G QK + + E + RL++K + +L D FGNYVVQ +
Sbjct: 813 HLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQTCLKFGA 872
Query: 656 PWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGD--DERRAHIIQEL-ISNAHL 708
P + + + + ++ +Y S V CL+ D +E+R + + + + HL
Sbjct: 873 PMNDF-VFEAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYSVHL 927
Score = 50 (22.7 bits), Expect = 5.1e-13, Sum P(4) = 5.1e-13
Identities = 49/223 (21%), Positives = 85/223 (38%)
Query: 5 RSELVVDEFEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNS--SKG--PLAEKL 60
RSE+ + LL N T +T + + N+ P ++S SK + KL
Sbjct: 77 RSEMEMSN--NLLKNTQNDTWTSTVGLSVPENQEAMNFNEGPTGISSIASKNNSSITSKL 134
Query: 61 KNNGNL------DEGKIL-VNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFN--GGIP 111
+NN NL + G+ V+ S P+ + Q L+S FN
Sbjct: 135 QNNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSSVSSGKQHLSSLSLHTHFNPSSSST 194
Query: 112 IEPVSPWANCNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDL 171
+ S ++ +P+ + + E +SN D +V + ++N+ SG +
Sbjct: 195 VSSDSLESSQQKAPSSSST--ATPASAASEIISNKDP--VVEPTHSASNAANSGSNTIRA 250
Query: 172 TKVRQESSNMVNLDVQELKKLQVGYRQPVENF----SGALPNA 210
+ + SN + + +GY P + S ALPNA
Sbjct: 251 RQTTRTRSNTLPWSPRVFGPT-LGYNTPPFGYPPTTSSALPNA 292
Score = 45 (20.9 bits), Expect = 5.1e-13, Sum P(4) = 5.1e-13
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 291 HPIQQNGSIPSKLM----GRTMRQPCFEMPNRL 319
HP Q + + L G +++ P FE+ NRL
Sbjct: 427 HPRPQGHGLNTSLFNTSSGGSLKSPTFEVSNRL 459
Score = 42 (19.8 bits), Expect = 5.1e-13, Sum P(4) = 5.1e-13
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 390 SLNHINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQP 442
SLN N +G S + ++ST ++ + + NSWP D+ + + +P
Sbjct: 542 SLN-TNNNGLRASTPEMA-NISTRSSS--ESNNTNSWPTVGDATIENLTQHEP 590
Score = 37 (18.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 137 NGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQ 176
+GL + SNV + + +V F DL+K+ Q
Sbjct: 679 DGLNKAFSNVSFVPSLREVYDDLINVVQSFGFKDLSKIYQ 718
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 203 (76.5 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 54/159 (33%), Positives = 84/159 (52%)
Query: 590 LFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQF 649
L++ T + LA GC + L G R + + +NA LS DP+G +VVQ
Sbjct: 326 LYKLTYEYTLHLARLETGCLALNNVLQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQN 385
Query: 650 VFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNA-HL 708
+ L+ P AT I ++L G++ L+M++ S VVEKCLK D R +++E NA
Sbjct: 386 ILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLK--SDFARDQVLEEFRGNAKEW 443
Query: 709 DQVMLDPYGNYVIQAALQQSKGGVHSAL----VDAIRPH 743
++ D +GN+V+Q+AL+ K L V+ +RPH
Sbjct: 444 VRMTTDKFGNFVVQSALRVMKEKEMRPLLREFVEKLRPH 482
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 48/211 (22%), Positives = 93/211 (44%)
Query: 444 KYNSVEEVTGRIYL-MAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
K S T RI+L +A +Q+G + L+ D +F + + LM+D +G
Sbjct: 251 KIGSALTTTKRIFLHLATNQYGSQALRILFRRSPSLD-HLLFCAVDTNFFLLMSDKYGRG 309
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRISTR--AVQKVIETLKSPEQFSLVVSSLKP 560
L+ + ++ ++ + + L R+ T A+ V++ ++ + L+ +
Sbjct: 310 LIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYR-DLIFECVAN 368
Query: 561 GIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG 620
L + G HV Q L+ P + + + + LA +R G V++KCL
Sbjct: 369 NADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLKSDFA 428
Query: 621 EQRHRLVSKITSNA---LILSQDPFGNYVVQ 648
R +++ + NA + ++ D FGN+VVQ
Sbjct: 429 --RDQVLEEFRGNAKEWVRMTTDKFGNFVVQ 457
>WB|WBGene00004240 [details] [associations]
symbol:puf-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000016078 EMBL:FO081656 PIR:T33752 RefSeq:NP_500301.1
UniGene:Cel.28747 ProteinModelPortal:Q8I723 SMR:Q8I723
EnsemblMetazoa:M4.2 GeneID:191754 KEGG:cel:CELE_M4.2 UCSC:M4.2
CTD:191754 WormBase:M4.2 InParanoid:Q8I723 NextBio:950224
Uniprot:Q8I723
Length = 420
Score = 138 (53.6 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 48/149 (32%), Positives = 76/149 (51%)
Query: 568 NMNGNHVAQRCLLYLLPEYSKFL--FQATTNNCVELATDRHGCCVIQKCL-THSEGEQR- 623
+ NGNHV Q+ L L P +FL F + N VE+ D++ C VIQ L T S+ EQ
Sbjct: 254 DQNGNHVIQQLLKTLPPSSWQFLVEFFSRDTNFVEVCEDKYVCRVIQSTLETLSKREQLV 313
Query: 624 --HRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATM--DILDQ--LEGNYGDLSMQK 677
RLV I N L+ + F NYVV+ V + T+ D++ + L N +S +K
Sbjct: 314 ALRRLVGVIIRNCGQLASNEFANYVVRHVIKCDDAEMTIYRDVIIEKCLLQNLLSMSQEK 373
Query: 678 YSSNVVEKCLKYGDDERRAHIIQELISNA 706
Y+S+++ + + + I + ++ NA
Sbjct: 374 YASHMIHVAGQSTEQKWLERIRERVVRNA 402
Score = 109 (43.4 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 460 KDQHGCRFLQRKISEGT-LEDIEKIFVEII-DHIVEL--MTDPFGNYLVQKLLEVCNEDQ 515
KD++GCRFLQ + SE +E +KIF +++ D ++ L FGN+ VQ++LE C++ +
Sbjct: 164 KDKNGCRFLQDQYSEDCHVESHQKIFEQLVADRVIFLDQCKHMFGNFFVQRVLE-CSDAE 222
Query: 516 RMQIL 520
+I+
Sbjct: 223 EQKII 227
Score = 38 (18.4 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 121 CNSSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVP 163
C + Y + QHP G K P + S A+S+ P
Sbjct: 41 CFNGLQYTPHRNAQHPLGSKCP-NAPKSNKATATSYHQRPDTP 82
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 197 (74.4 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 62/214 (28%), Positives = 108/214 (50%)
Query: 459 AKDQHGCRFLQRKISEGTLEDI-EKIFVEIIDH---IVELMTDPFGNYLVQKLLEVCNED 514
A D++GCRFLQ D+ +K+F ++++ + L ++ FGN+ VQ++LE N +
Sbjct: 150 ATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECSNTE 209
Query: 515 QRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGN 572
++ + + + +L + + R +Q I+ L L + +V L + NGN
Sbjct: 210 EQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHLVRLSIDQNGN 269
Query: 573 HVAQRCLLYLLPEYS-KFL--FQATTNNCVELATDRHGCCVIQKCLTHSEGEQ-----RH 624
HV Q+ ++ LP S FL F A +N + + D++GC VIQ + +Q +H
Sbjct: 270 HVIQK-IVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVETLSTDQYAQCYQH 328
Query: 625 R------LVSKITSNALILSQDPFGNYVVQFVFE 652
R L++ +T N L+ + F NYVVQ V +
Sbjct: 329 RVILLRSLMAGVTRNCTQLASNEFANYVVQHVIK 362
Score = 121 (47.7 bits), Expect = 0.00065, P = 0.00065
Identities = 39/144 (27%), Positives = 71/144 (49%)
Query: 599 VELATDRHGCCVIQKCL-THSEGEQRHRLVSKITSN-ALILS--QDPFGNYVVQFVFELR 654
VE ATD++GC +Q+ T ++ + +L K+ + A+ LS + FGN+ VQ V E
Sbjct: 147 VEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECS 206
Query: 655 LPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLD 714
+ + L + +L + K + V++ ++ D + EL + HL ++ +D
Sbjct: 207 NTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLEL-RDTHLVRLSID 265
Query: 715 PYGNYVIQAALQQSKGGVHSALVD 738
GN+VIQ ++ + LVD
Sbjct: 266 QNGNHVIQKIVKTLPVSSWTFLVD 289
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 197 (74.4 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 62/214 (28%), Positives = 108/214 (50%)
Query: 459 AKDQHGCRFLQRKISEGTLEDI-EKIFVEIIDH---IVELMTDPFGNYLVQKLLEVCNED 514
A D++GCRFLQ D+ +K+F ++++ + L ++ FGN+ VQ++LE N +
Sbjct: 150 ATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECSNTE 209
Query: 515 QRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGN 572
++ + + + +L + + R +Q I+ L L + +V L + NGN
Sbjct: 210 EQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHLVRLSIDQNGN 269
Query: 573 HVAQRCLLYLLPEYS-KFL--FQATTNNCVELATDRHGCCVIQKCLTHSEGEQ-----RH 624
HV Q+ ++ LP S FL F A +N + + D++GC VIQ + +Q +H
Sbjct: 270 HVIQK-IVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVETLSTDQYAQCYQH 328
Query: 625 R------LVSKITSNALILSQDPFGNYVVQFVFE 652
R L++ +T N L+ + F NYVVQ V +
Sbjct: 329 RVILLRSLMAGVTRNCTQLASNEFANYVVQHVIK 362
Score = 121 (47.7 bits), Expect = 0.00065, P = 0.00065
Identities = 39/144 (27%), Positives = 71/144 (49%)
Query: 599 VELATDRHGCCVIQKCL-THSEGEQRHRLVSKITSN-ALILS--QDPFGNYVVQFVFELR 654
VE ATD++GC +Q+ T ++ + +L K+ + A+ LS + FGN+ VQ V E
Sbjct: 147 VEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECS 206
Query: 655 LPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLD 714
+ + L + +L + K + V++ ++ D + EL + HL ++ +D
Sbjct: 207 NTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLEL-RDTHLVRLSID 265
Query: 715 PYGNYVIQAALQQSKGGVHSALVD 738
GN+VIQ ++ + LVD
Sbjct: 266 QNGNHVIQKIVKTLPVSSWTFLVD 289
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 195 (73.7 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 66/216 (30%), Positives = 107/216 (49%)
Query: 459 AKDQHGCRFLQRKISEGTLEDI-EKIFVEIIDH---IVELMTDPFGNYLVQKLLEVCNED 514
A D++GCRFLQ + DI +K+F ++++ + L + FGN+ VQ++LE C+
Sbjct: 153 ATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLE-CSNT 211
Query: 515 QRMQILQAITRKAGDLVRI-----STRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
+ +IL A DL + + R +Q I+ L L + +V L +
Sbjct: 212 EEQEILTE--HLASDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTYLVRLSIDQ 269
Query: 570 NGNHVAQRCLLYLLPEYSKFL--FQATTNNCVELATDRHGCCVIQKCL------THSEG- 620
NGNHV Q+ + L F+ F A +N + + D++GC VIQ + T++E
Sbjct: 270 NGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQSTVETLSSDTYAECY 329
Query: 621 EQR----HRLVSKITSNALILSQDPFGNYVVQFVFE 652
+QR L+S +T N L+ + F NYVVQ V +
Sbjct: 330 QQRVVLLRSLMSGVTRNCSQLASNEFANYVVQHVIK 365
>SGD|S000003851 [details] [associations]
symbol:JSN1 "Member of the Puf family of RNA-binding
proteins" species:4932 "Saccharomyces cerevisiae" [GO:0051654
"establishment of mitochondrion localization" evidence=IMP]
[GO:0034629 "cellular protein complex localization" evidence=IMP]
[GO:0032473 "external side of mitochondrial outer membrane"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000003851
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006943
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:L47993
GO:GO:0051654 GO:GO:0000288 EMBL:Z49591 eggNOG:COG5099
GO:GO:0034629 EMBL:L43493 PIR:S57112 RefSeq:NP_012624.1
ProteinModelPortal:P47135 SMR:P47135 DIP:DIP-1281N IntAct:P47135
MINT:MINT-405099 STRING:P47135 PaxDb:P47135 PeptideAtlas:P47135
EnsemblFungi:YJR091C GeneID:853553 KEGG:sce:YJR091C CYGD:YJR091c
GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136 OMA:CLEAHDI
OrthoDB:EOG4MWCFG NextBio:974290 Genevestigator:P47135
GermOnline:YJR091C GO:GO:0032473 Uniprot:P47135
Length = 1091
Score = 197 (74.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 83/325 (25%), Positives = 146/325 (44%)
Query: 393 HINQSGKLLSNGHLCLSLSTPNAGCFQIDGLNSWPLS-SDSMDLKIIRPQPQKYNSVEEV 451
++N+ LL + L N+ +QI+ L L+ + D + P P E +
Sbjct: 534 NVNEKEDLLRE---IIELFEANSDEYQINSLIKKSLNHKGTSDTQNFGPLP------EPL 584
Query: 452 TGRIYLMAKDQHGCRFLQRKISEGTLED--IEKIFVEIIDHIVELMTDPFGNYLVQKLLE 509
+GR + D R L++ I D IE++ + ++D + EL +D GN +VQKL E
Sbjct: 585 SGREF----DPPKLRELRKSIDSNAFSDLEIEQLAIAMLDELPELSSDYLGNTIVQKLFE 640
Query: 510 VCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIK 567
++ + +L+ ++ + + T A QK+I +P Q V +K LI
Sbjct: 641 HSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQGVKDYCTPLIN 700
Query: 568 NMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL-THS--EGEQRH 624
+ GN+V Q L + P +++F+F++ N + +R+G ++ CL H EQ
Sbjct: 701 DQFGNYVIQCVLKFGFP-WNQFIFESIIANFWVIVQNRYGARAVRACLEAHDIVTPEQSI 759
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELR-LPWATMDILDQLEGNYGDLSMQKYSSNVV 683
L + I + A LS + G +V + + LP + +L +L + +S +
Sbjct: 760 VLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTKRIVELCGHRLASLTI 819
Query: 684 EKCLKY-GDDERRAHIIQELISNAH 707
K L Y GDD R I+ L N +
Sbjct: 820 LKVLNYRGDDNARKIILDSLFGNVN 844
Score = 48 (22.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 13 FEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKLKN-NGNLDEGKI 71
F +L N S + ++ ++ ++ + LPP VN + L E ++ N DE +I
Sbjct: 499 FSNVLHGYNNNNSMHGNNNNSANEKEQCPFPLPPPNVNEKEDLLREIIELFEANSDEYQI 558
Query: 72 --LVNKS 76
L+ KS
Sbjct: 559 NSLIKKS 565
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 183 (69.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 65/313 (20%), Positives = 132/313 (42%)
Query: 457 LMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQR 516
+ DQ LQ+++ +ED + I+ V LM + FGN+L+QK E E Q
Sbjct: 262 IFQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQL 321
Query: 517 MQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSL-VVSSLKPGIVTLIKNMNGNH 573
+ + +L + +QK +E PE+F+ ++ L + + + H
Sbjct: 322 QSFSYFLKKHVKELSIDAFGSHVLQKSLEIY--PERFTNNLIEELIECLPATLMQRHSCH 379
Query: 574 VAQRCLLYLLPEYSKFLF----QATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSK 629
V Q+ +F + ++++ G V+Q + + + + + +
Sbjct: 380 VWQKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDE 439
Query: 630 ITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKY 689
I +N + +GN+V+Q + E IL+ L S +Y+S VVE+ L+
Sbjct: 440 IINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRV 499
Query: 690 GDDERRAHIIQEL------ISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPH 743
++E+ + L ++ + YGNY++Q LQ + + + + ++ H
Sbjct: 500 CHVTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKH 559
Query: 744 VPVLRTSPYGKKV 756
+ LR YG+++
Sbjct: 560 MVSLRGHKYGQRI 572
Score = 146 (56.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 51/212 (24%), Positives = 97/212 (45%)
Query: 554 VVSSLKPGIVTLIKNMNGNHVAQRCLLYL----LPEYSKFLFQATTNNCVELATDRHGCC 609
+++++ P VTL+KN GN + Q+C Y L +S FL + EL+ D G
Sbjct: 288 LINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFL----KKHVKELSIDAFGSH 343
Query: 610 VIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILD----Q 665
V+QK L + L+ ++ +V Q FE R I D +
Sbjct: 344 VLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRKSLVDGIFDHFNKK 403
Query: 666 LEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAAL 725
++G + +S+ + S VV+ + ++ + + E+I+N +DQ++ +GN+VIQ +
Sbjct: 404 MQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINN--MDQIICGQWGNWVIQHII 461
Query: 726 QQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ +++++ V T+ Y KV+
Sbjct: 462 EHGSEPDKQRILNSLLKEVESYSTNRYASKVV 493
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 173 (66.0 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 69/303 (22%), Positives = 139/303 (45%)
Query: 479 DIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQ-RMQILQAITRKAGDLV--RIST 535
++E++ + ++D + EL D GN +VQKL + ++ +++ + L + T
Sbjct: 5 ELEELCLAMLDELPELSYDYLGNTIVQKLFTLVESSLVKLMMVKEVAPYLTQLGIHKNGT 64
Query: 536 RAVQKVIETLKSP-EQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQAT 594
A+QK+I S +Q L+ +SLKP V L + GN+V Q C+ + P ++ F+F+A
Sbjct: 65 WAIQKIINLCHSDYQQMYLIGASLKPYAVKLFNDQFGNYVIQGCIKFGSP-FNDFVFEAM 123
Query: 595 TNNCVELATDRHGC-CV---IQKCLTHSE-----GEQRHRLVSKITSNALILSQDPFGNY 645
+N +E++ R G C+ ++ C S EQ + I A L+ + G+
Sbjct: 124 LDNFLEISVGRFGARCIRTILESCHDSSSTSPVTNEQVLLVAGLIIEFANELAVNSNGSL 183
Query: 646 VVQFVFELRLPW-ATMDIL-DQLEGNYGDLSMQKYSSNVVEKCLKYG-DDERRAHIIQEL 702
++ + + + +++L + N L + K ++ V K L DD+ R + +
Sbjct: 184 LITWYLDTFKDCDSKIELLMSKFLPNIRALCVHKLANLTVLKILNNRIDDKSRVATMDAI 243
Query: 703 ISNAH-LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNS 761
+N L+ ++ + + L K + L D + H+P +R +++ +
Sbjct: 244 FNNKETLEYILQESDNSNTTAGPLFIYKILSNPTLADLVNQHIPTIRKILMELNIVNFQN 303
Query: 762 LKK 764
KK
Sbjct: 304 YKK 306
>SGD|S000006246 [details] [associations]
symbol:PUF2 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000006246
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:Z71255
EMBL:BK006949 EMBL:Z49219 GO:GO:0000288 EMBL:Z68111 eggNOG:COG5099
EMBL:Z73616 GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136
OrthoDB:EOG4MWCFG PIR:S54067 RefSeq:NP_015367.1
ProteinModelPortal:Q12221 SMR:Q12221 IntAct:Q12221
MINT:MINT-4505998 STRING:Q12221 PaxDb:Q12221 EnsemblFungi:YPR042C
GeneID:856155 KEGG:sce:YPR042C CYGD:YPR042c NextBio:981289
Genevestigator:Q12221 GermOnline:YPR042C Uniprot:Q12221
Length = 1075
Score = 168 (64.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 70/273 (25%), Positives = 131/273 (47%)
Query: 466 RFLQRKISEGTLEDIE--KIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAI 523
R L+++ +L IE ++ + ++D + EL +D GN ++QKL E + R +L+
Sbjct: 554 RELRKQFDSNSLSTIEMEQLAIVMLDQLPELSSDYLGNTVIQKLFENSSNIIRDIMLRKC 613
Query: 524 TRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLY 581
+ + + T QK+I+ +P Q +LV S + L + GN+V Q L +
Sbjct: 614 NKYLTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKF 673
Query: 582 LLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQ-- 639
P ++ F+F++ ++ + +R+G ++ CL + +L++ ITS ++LS
Sbjct: 674 GFP-WNSFIFESVLSHFWTIVQNRYGSRAVRACLEADSIITQCQLLT-ITSLIIVLSPYL 731
Query: 640 --DPFGNYVVQFVFEL-RLPWATMDILDQLEG-NYGDLSMQKYSSNVVEKCLKY--GDDE 693
D G ++ ++ + LP + + D+L N L K S V K L G++E
Sbjct: 732 ATDTNGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLRGGEEE 791
Query: 694 RRA-----HIIQE--LISNAHLDQVMLDPYGNY 719
+ H I + + S++ L Q+ LD GNY
Sbjct: 792 ALSKNKIIHAIFDGPISSDSILFQI-LDE-GNY 822
Score = 52 (23.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 44/182 (24%), Positives = 72/182 (39%)
Query: 17 LGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKLKNNGNLDEGKILVNKS 76
L + P ATS + E + + NY LP L L+ NGN + N +
Sbjct: 180 LFDYPLATS---YFEPLTRFKSTDNYTLP------QTAQLNSFLEKNGNPNIWSSAGNSN 230
Query: 77 QQ---SPIKRIPQEEANLPDDQSLTSA--FAELRFNGGIPIEPVSPWANCNSSPNYAVLL 131
+PI + ++ ++ T A + + N + + P P + + SP V+L
Sbjct: 231 TDHLNTPIVNRQRSQSQSTTNRVYTDAPYYQQPAQNYQVQVPPRVP-KSTSISP---VIL 286
Query: 132 DCQHPNGLKEPVSNVDSQLM-VASSFQSTNSVPSGFDEFDLTKVRQESSNMVNLDVQELK 190
D P + +N L+ S+ TN++ S + F L +Q N VNL L
Sbjct: 287 DDVDPASINWITANQKVPLVNQISALLPTNTI-SISNVFPLQPTQQHQQNAVNLTSTSLA 345
Query: 191 KL 192
L
Sbjct: 346 TL 347
Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 157 QSTNSVPSGFDEFDLTKVRQ-----ESSNMVNLDVQEL 189
+ + VP D FD K+R+ +S+++ +++++L
Sbjct: 536 EHNSKVPKRKDTFDAPKLRELRKQFDSNSLSTIEMEQL 573
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 172 (65.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 67/294 (22%), Positives = 142/294 (48%)
Query: 447 SVEEV--TGRIYLMAKDQHGCRFLQRKISEGTLEDIEK--IFVEII---DHIVELMTDPF 499
S+ EV +G + A D+ GC+FL++ + +G+L +K +F ++I D ++L T+ F
Sbjct: 184 SLSEVLDSGDLMKFAVDKTGCQFLEKAV-KGSLTSYQKFQLFEQVIGRKDDFLKLSTNIF 242
Query: 500 GNYLVQKLLEVC---NED---QRMQILQA-ITRKAGDLV--RISTRAVQKVIETLKSPEQ 550
GNYLVQ ++ + N+D +R + L+ I+ + D+ + + R +Q ++ +
Sbjct: 243 GNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLA 302
Query: 551 FSLVVSSLKPG-IVTLIKNMNGNHVAQRCLLYLLPEYSKFL--FQATTNNCVELATDRHG 607
LV + + ++ + + N NHV Q+ + + + +F+ F AT + ++ +D++G
Sbjct: 303 CKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYG 362
Query: 608 CCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLE 667
C V+Q + + + ++ N + V EL I+ +
Sbjct: 363 CRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 422
Query: 668 GNYGDLSMQKYSSNVVEKCL-----KYGDDERRAHIIQELISNAHLDQV--MLD 714
N DL++ Y ++EKCL ++ +H++++ +A L+ + M+D
Sbjct: 423 SN-DDLAV--YRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMD 473
Score = 41 (19.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 78 QSPIKRIPQEEANLPDDQSLTSAFAELRFNGGI 110
QSP+ Q E + D SL F+ L N GI
Sbjct: 32 QSPMA---QHETPMWDFNSLNPYFSMLNMNDGI 61
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 157 (60.3 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 66/270 (24%), Positives = 120/270 (44%)
Query: 481 EKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQIL-QAITRKAGDLVR--ISTRA 537
EK F E V L GN++VQKL+E+ ++ ++L Q I + + + R
Sbjct: 124 EK-FTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRV 182
Query: 538 VQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFL--FQATT 595
VQ ++ F L+ + + + HV QR + L + F F ++
Sbjct: 183 VQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSG 242
Query: 596 NNCVELATDRHGCCVIQKCLTH-SEGEQR----------HRLVSKITSNALILSQDPFGN 644
++ + + D++GC ++Q+ + +E + H L++ I N LS + F N
Sbjct: 243 DSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFAN 302
Query: 645 YVVQFVFELR--LPWATMDILDQ-LEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQE 701
YV+Q+V + + I+D+ L N +S KY+S+V+E + +++E
Sbjct: 303 YVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEE 362
Query: 702 LIS--------NAH-LDQVMLDPYGNYVIQ 722
+ S N LD ++ YGNYV+Q
Sbjct: 363 IFSGYVKDVESNRDALDILLFHQYGNYVVQ 392
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 154 (59.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 58/251 (23%), Positives = 116/251 (46%)
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKAGDLV---RISTRAVQKVIETLKSPEQFSLVVS 556
GN++VQKL+E+ ++ ++L+ + ++ + + R VQ ++ F L+
Sbjct: 142 GNFIVQKLVELATPAEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHSNVFQLIQE 201
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFL--FQATTNNCVELATDRHGCCVIQKC 614
+ + + HV QR + L + F F ++ ++ + + D++GC ++Q+
Sbjct: 202 LSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQV 261
Query: 615 LTH-SEGEQR----------HRLVSKITSNALILSQDPFGNYVVQFVFELR--LPWATMD 661
+ +E + H L++ I N LS + F NYV+Q+V + +
Sbjct: 262 IDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDT 321
Query: 662 ILDQ-LEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS----NAHLDQVMLD-- 714
I+D+ L N +S KY+S+V+E + +++E+ S + L++ LD
Sbjct: 322 IIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVELNRDALDIL 381
Query: 715 ---PYGNYVIQ 722
YGNYV+Q
Sbjct: 382 LFHQYGNYVVQ 392
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 149 (57.5 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 63/254 (24%), Positives = 117/254 (46%)
Query: 500 GNYLVQKLLEVCNEDQRMQILQAITRKA---GDLVRISTRAVQKVIETLKSPEQFSLV-- 554
GN+++QK +E D++ ++++ + L + + R VQ I+ LV
Sbjct: 202 GNFIIQKFVEHATLDEQERLVRKMCDNGLIEMCLDKFACRVVQMSIQKFDVSIAMKLVEK 261
Query: 555 VSSLKPGIVTLIKNMNGNHVAQRCLLYLLP--EYSKFL-FQATTNNCVELATDRHGCCVI 611
+SSL + L + HV Q+ ++ LLP +S F+ F +N + + D++GC ++
Sbjct: 262 ISSLD--FLPLCTDQCAIHVLQK-VVKLLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLV 318
Query: 612 QKCLTHSEGEQR-----------HRLVSKITSNALILSQDPFGNYVVQFVFELR--LPWA 658
Q+ + + H L++ + N LS + F NYVVQ+V + +
Sbjct: 319 QQTIDKLSDNPKLHCFNTRLQLLHGLMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMY 378
Query: 659 TMDILDQ-LEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELI--------SNAH-L 708
I+++ L N +S KY+S+VVE + + ++ E+ +N L
Sbjct: 379 RDTIIEKCLLRNILSMSQDKYASHVVEGAFLFAPPLLLSEMMDEIFDGYVKDQETNRDAL 438
Query: 709 DQVMLDPYGNYVIQ 722
D ++ YGNYV+Q
Sbjct: 439 DILLFHQYGNYVVQ 452
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 148 (57.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 60/260 (23%), Positives = 124/260 (47%)
Query: 447 SVEEV--TGRIYLMAKDQHGCRFLQRKISEGTLEDIEK--IFVEII---DHIVELMTDPF 499
S+ EV +G + A D+ GC+FL++ + +G+L +K +F ++I D ++L T+ F
Sbjct: 182 SLSEVLDSGDLMKFAVDKTGCQFLEKAV-KGSLTSYQKFQLFEQVIGRKDDFLKLSTNIF 240
Query: 500 GNYLVQKL----LEVCNED--QRMQILQA-ITRKAGDLV--RISTRAVQKVIETLKSPEQ 550
GNY VQ++ L ++D +R + L+ I+ + D+ + + R +Q ++ +
Sbjct: 241 GNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLA 300
Query: 551 FSLVVSSLKPG-IVTLIKNMNGNHVAQRCLLYLLPEYSKFL--FQATTNNCVELATDRHG 607
LV + + ++ + + N NHV Q+ + + + +F+ F AT + ++ D++G
Sbjct: 301 CKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYG 360
Query: 608 CCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLE 667
C V+Q + + + ++ + + V EL I+ +
Sbjct: 361 CRVVQTIIEKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 420
Query: 668 GNYGDLSMQKYSSNVVEKCL 687
N DL++ Y ++EKCL
Sbjct: 421 SN-DDLAV--YRECIIEKCL 437
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 148 (57.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 60/260 (23%), Positives = 124/260 (47%)
Query: 447 SVEEV--TGRIYLMAKDQHGCRFLQRKISEGTLEDIEK--IFVEII---DHIVELMTDPF 499
S+ EV +G + A D+ GC+FL++ + +G+L +K +F ++I D ++L T+ F
Sbjct: 182 SLSEVLDSGDLMKFAVDKTGCQFLEKAV-KGSLTSYQKFQLFEQVIGRKDDFLKLSTNIF 240
Query: 500 GNYLVQKL----LEVCNED--QRMQILQA-ITRKAGDLV--RISTRAVQKVIETLKSPEQ 550
GNY VQ++ L ++D +R + L+ I+ + D+ + + R +Q ++ +
Sbjct: 241 GNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLA 300
Query: 551 FSLVVSSLKPG-IVTLIKNMNGNHVAQRCLLYLLPEYSKFL--FQATTNNCVELATDRHG 607
LV + + ++ + + N NHV Q+ + + + +F+ F AT + ++ D++G
Sbjct: 301 CKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYG 360
Query: 608 CCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLE 667
C V+Q + + + ++ + + V EL I+ +
Sbjct: 361 CRVVQTIIEKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 420
Query: 668 GNYGDLSMQKYSSNVVEKCL 687
N DL++ Y ++EKCL
Sbjct: 421 SN-DDLAV--YRECIIEKCL 437
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 764 745 0.00089 121 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 85
No. of states in DFA: 619 (66 KB)
Total size of DFA: 376 KB (2184 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.74u 0.17s 67.91t Elapsed: 00:00:04
Total cpu time: 67.79u 0.17s 67.96t Elapsed: 00:00:04
Start: Mon May 20 21:56:33 2013 End: Mon May 20 21:56:37 2013